Citrus Sinensis ID: 013228

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------
Protein Sequence
MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWCGRVAGPQPGNEGEDALGSNVITDGKVY
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHcccccHHHHHHHHHHHHHHHccccccHHHHHHcHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
HHHHHHcccHHHHHHHHHHHHHHccccccccHHHHHHcccHHHHHHHHccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHcHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccHccccccccccccc
Coil and Loop (DISEMBL)
mvagvwsddnnmqLEATTHIRKLLSnarsapteevipfgvvpRFVEFLMREDYPQLQFEAAWALKNivsgtsedtkvvidhGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTlsnfcagkpkpifdqvrpalPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRlvellghpspsvLTRALQTVVNiaagddfqtqciincgaLPYLLGLLIHnhkksiktdacwtisnitagnsEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGcikplcdlllcadpEIVTVFLKGLEKILKVGeaeknmdiaIGDVNQYAQLVEEAEGLEKIEnlrshdndeiHEKSVKILETYwcgrvagpqpgnegedalgsnvitdgkvy
Flexible Loop (DISEMBL)
mvagvwsddnnmqLEATTHIRKLLSnarsapteevipfgVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIEnlrshdndeiHEKSVKILETYWCGRVAgpqpgnegedalgsnvitdgkvy
Low Complexity Region (SEG)
MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWCGRVAGPQPGNEGEDALGSNVITDGKVY
Disordered region (IsUnstruct)
*******************I**L********TEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKI**********IHEKSVKILETYWCGRVA***********************
Disordered Region (DISOPRED)
MVAGV**DDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWCGRVA***********************
Disordered Region (DISEMBL)
MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWCGRVAGPQPGNEGEDALGSNVITDGKVY
Disordered Region (DISPRO)
MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWCG**************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWCGRVAGPQPGNEGEDALGSNVITDGKVY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	447	2.2.26 [Sep-21-2011]
Q71VM4	526	Importin subunit alpha-1a	yes	no	0.961	0.817	0.725	0.0
Q96321	532	Importin subunit alpha-1	yes	no	0.935	0.785	0.744	1e-180
Q9SLX0	534	Importin subunit alpha-1b	no	no	0.932	0.780	0.730	1e-175
O22478	527	Importin subunit alpha OS	N/A	no	0.986	0.836	0.683	1e-171
O04294	531	Importin subunit alpha-2	no	no	0.935	0.787	0.658	1e-160
Q76P29	516	Importin subunit alpha-B	yes	no	0.923	0.800	0.554	1e-126
O35345	536	Importin subunit alpha-7	yes	no	0.930	0.776	0.562	1e-122
Q0V7M0	536	Importin subunit alpha-7	yes	no	0.930	0.776	0.562	1e-122
Q5RBV0	536	Importin subunit alpha-7	yes	no	0.930	0.776	0.560	1e-121
O60684	536	Importin subunit alpha-7	yes	no	0.930	0.776	0.560	1e-121

>sp|Q71VM4|IMA1A_ORYSJ Importin subunit alpha-1a OS=Oryza sativa subsp. japonica GN=Os01g0253300 PE=1 SV=2

 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/441 (72%), Positives = 365/441 (82%), Gaps = 11/441 (2%)

Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
           M+ GV+SDDNN+QLEATT  RKLLS  RS P EEVI  GVVPRFV+FL RED+PQLQFEA
Sbjct: 77  MIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEA 136

Query: 61  AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
           AWAL NI SGTSE+TKVVIDHGAVPIFVKLL S SDD+REQAV ALGNVA DS +CRDLV
Sbjct: 137 AWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLV 196

Query: 121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDK 180
           L+  AL+PLL QLN+H KLSMLR ATWTLSNFC GKP+P F+Q RPALPALA+L+HSND+
Sbjct: 197 LANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDE 256

Query: 181 EVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD 240
           EV+TDAC AL YLS+GTND+IQAVIEAGVCPRLVELL HPSPSVL  AL+TV NI  GDD
Sbjct: 257 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDD 316

Query: 241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVN 300
            QTQCII+  ALP LL LL  N KKSIK +ACWTISNITAGN + IQAVI+AG+IGPLVN
Sbjct: 317 AQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVN 376

Query: 301 LLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGL 360
           LLQ AEFDIK  AA AISNAT GG+H+QIKYLV EGCIKPLCDLL+C D  IVTV L+GL
Sbjct: 377 LLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGL 436

Query: 361 EKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWC 420
           E ILKVGE +K +  A GDVN ++Q+++EAEGLEKIENL+SHDN+EI+EK+VKILE YW 
Sbjct: 437 ENILKVGETDKTL--AAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWM 494

Query: 421 GRVAGPQPGNEGEDALGSNVI 441
                    +E +D +G+  +
Sbjct: 495 ---------DEEDDTMGATTV 506

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q96321|IMA1_ARATH Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=1 SV=2

 Score =  630 bits (1624), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 312/419 (74%), Positives = 354/419 (84%), Gaps = 1/419 (0%)

Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
           MVAGVWSDD  +QLE+TT  RKLLS  RS P EEVI  GVVPRFVEFL +EDYP +QFEA
Sbjct: 77  MVAGVWSDDPALQLESTTQFRKLLSIERSPPIEEVISAGVVPRFVEFLKKEDYPAIQFEA 136

Query: 61  AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
           AWAL NI SGTS+ TKVVIDH AVPIFV+LLASPSDD+REQAV ALGNVA DS RCRDLV
Sbjct: 137 AWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQAVWALGNVAGDSPRCRDLV 196

Query: 121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDK 180
           L   AL+PLL QLN+HAKLSMLR ATWTLSNFC GKP+P FDQV+PALPAL +L+HS+D+
Sbjct: 197 LGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQPHFDQVKPALPALERLIHSDDE 256

Query: 181 EVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD 240
           EV+TDAC AL YLS+GTND+IQ VI+AGV P+LVELL H SPSVL  AL+TV NI  GDD
Sbjct: 257 EVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLVELLLHHSPSVLIPALRTVGNIVTGDD 316

Query: 241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVN 300
            QTQC+IN GALP L  LL  NHKKSIK +ACWTISNITAGN + IQ V++A LI PLV+
Sbjct: 317 IQTQCVINSGALPCLANLLTQNHKKSIKKEACWTISNITAGNKDQIQTVVEANLISPLVS 376

Query: 301 LLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGL 360
           LLQNAEFDIK  AA AISNAT GG+H+QIKYLV +GCIKPLCDLL+C DP I+TV L+GL
Sbjct: 377 LLQNAEFDIKKEAAWAISNATSGGSHDQIKYLVEQGCIKPLCDLLVCPDPRIITVCLEGL 436

Query: 361 EKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYW 419
           E ILKVGEAEKN+    GD+N YAQL+++AEGLEKIENL+SHDN+EI+EK+VKILETYW
Sbjct: 437 ENILKVGEAEKNLG-HTGDMNYYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKILETYW 494

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs (By similarity). Cellular receptor for the nuclear import of the virD2 protein of Agrobacterium.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SLX0|IMA1B_ORYSJ Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2

 Score =  615 bits (1585), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 306/419 (73%), Positives = 351/419 (83%), Gaps = 2/419 (0%)

Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
           MV  V SDD+ +QLEATT  RKLLS  RS P EEVI  GVVPRF+ FL REDYPQLQFEA
Sbjct: 83  MVQAVQSDDSAVQLEATTQFRKLLSIERSPPIEEVINTGVVPRFIAFLQREDYPQLQFEA 142

Query: 61  AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
           AWAL NI SGTS++TKVV++ GAVPIFVKLL+SPS+D+REQAV ALGNVA DS +CRDLV
Sbjct: 143 AWALTNIASGTSDNTKVVVESGAVPIFVKLLSSPSEDVREQAVWALGNVAGDSPKCRDLV 202

Query: 121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDK 180
           L+   L PLL QLN+HAKLSMLR ATWTLSNFC GKP+P F+QV+PAL AL +L+HS D+
Sbjct: 203 LASGGLYPLLQQLNEHAKLSMLRNATWTLSNFCRGKPQPNFEQVKPALSALQRLIHSQDE 262

Query: 181 EVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD 240
           EV+TDAC AL YLS+GTND+IQAVIE+GV PRLVELL HPS SVL  AL+TV NI  GDD
Sbjct: 263 EVLTDACWALSYLSDGTNDKIQAVIESGVFPRLVELLMHPSASVLIPALRTVGNIVTGDD 322

Query: 241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVN 300
            QTQC+I+  ALP LL LL +NHKKSIK +ACWTISNITAGN E IQAVI+A +I PLV+
Sbjct: 323 MQTQCVIDHQALPCLLNLLTNNHKKSIKKEACWTISNITAGNREQIQAVINANIIAPLVH 382

Query: 301 LLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGL 360
           LLQ AEFDIK  AA AISNAT GGTH+QIKYLV +GCIKPLCDLL+C DP IVTV L+GL
Sbjct: 383 LLQTAEFDIKKEAAWAISNATSGGTHDQIKYLVAQGCIKPLCDLLVCPDPRIVTVCLEGL 442

Query: 361 EKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYW 419
           E ILKVGEAEKN+    GDVN YAQ++++AEGLEKIENL+SHDN EI+EK+VK+LE+YW
Sbjct: 443 ENILKVGEAEKNL--GAGDVNSYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKMLESYW 499

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. In conjunction with importin beta-1, mediates the nuclear envelope docking, and the subsequent translocation into the nucleus of the constitutive morphogenetic 1 (COP1) protein containing bipartite NLS motif.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O22478|IMA_SOLLC Importin subunit alpha OS=Solanum lycopersicum PE=2 SV=2

 Score =  602 bits (1552), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 302/442 (68%), Positives = 355/442 (80%), Gaps = 1/442 (0%)

Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
           ++AGVWSDD+++QLE TT  RKLLS  R+ P EEVI  GVVPRFVEFL R+DYPQLQFEA
Sbjct: 78  LIAGVWSDDSSLQLECTTQFRKLLSIERNPPIEEVIQSGVVPRFVEFLARDDYPQLQFEA 137

Query: 61  AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
           AWAL NI SGTSE+TKVVID+G+VPIF++LL+SPSDD+REQAV ALGN+A DS + RDLV
Sbjct: 138 AWALTNIASGTSENTKVVIDYGSVPIFIRLLSSPSDDVREQAVWALGNIAGDSPKYRDLV 197

Query: 121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDK 180
           L   AL+ LL Q N+ AKLSMLR ATWTLSNFC GKP+P+F+Q + ALP L +L+HSND+
Sbjct: 198 LGHGALVALLAQFNEQAKLSMLRNATWTLSNFCRGKPQPLFEQTKAALPTLGRLIHSNDE 257

Query: 181 EVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD 240
           EV+TDAC AL YLS+GTND+IQAVIEAGVC RLVELL H SPSVL  AL+TV NI  GDD
Sbjct: 258 EVLTDACWALSYLSDGTNDKIQAVIEAGVCSRLVELLLHSSPSVLIPALRTVGNIVTGDD 317

Query: 241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVN 300
            QTQ +I+  ALP L+ LL  N+KKSIK +ACWTISNITAGN   IQ VI+AG+I PLV 
Sbjct: 318 IQTQVMIDHHALPCLVNLLTQNYKKSIKKEACWTISNITAGNRNQIQIVIEAGIIAPLVY 377

Query: 301 LLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGL 360
           LLQNAEF+IK  AA AISNAT GG H+QIK+LV +GCIKPLCDLL+C DP IVTV L+GL
Sbjct: 378 LLQNAEFEIKKEAAWAISNATSGGNHDQIKFLVSQGCIKPLCDLLVCPDPRIVTVCLEGL 437

Query: 361 EKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWC 420
           E ILK+GEA+K++    G VN YAQL++EAEGLEKIENL+SHDN EI+EK+VKILETYW 
Sbjct: 438 ENILKIGEADKDLGNTEG-VNVYAQLIDEAEGLEKIENLQSHDNTEIYEKAVKILETYWL 496

Query: 421 GRVAGPQPGNEGEDALGSNVIT 442
                P   NE +   G   I+
Sbjct: 497 EEEDVPVSLNEDQFEFGGADIS 518

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Solanum lycopersicum (taxid: 4081)

>sp|O04294|IMA2_ARATH Importin subunit alpha-2 OS=Arabidopsis thaliana GN=KAP2 PE=1 SV=2

 Score =  564 bits (1454), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 276/419 (65%), Positives = 344/419 (82%), Gaps = 1/419 (0%)

Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
           MVAG+WS+D+N QLEAT  +RKLLS  ++ P  EV+  GVVPR V+FL R+D+P+LQFEA
Sbjct: 80  MVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINEVVQSGVVPRVVKFLSRDDFPKLQFEA 139

Query: 61  AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
           AWAL NI SGTSE+T V+I+ GAVPIF++LL+S S+D+REQAV ALGNVA DS +CRDLV
Sbjct: 140 AWALTNIASGTSENTNVIIESGAVPIFIQLLSSASEDVREQAVWALGNVAGDSPKCRDLV 199

Query: 121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDK 180
           LS  A+ PLL+Q N++ KLSMLR ATWTLSNFC GKP P F+Q +PALP L +LV S D+
Sbjct: 200 LSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCRGKPPPAFEQTQPALPVLERLVQSMDE 259

Query: 181 EVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD 240
           EV+TDAC AL YLS+ +ND+IQAVIEAGV PRL++LLGH SPSVL  AL+T+ NI  GDD
Sbjct: 260 EVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLIQLLGHSSPSVLIPALRTIGNIVTGDD 319

Query: 241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVN 300
            QTQ +++  ALP LL LL +N+KKSIK +ACWTISNITAGN++ IQAVIDAG+I  LV 
Sbjct: 320 LQTQMVLDQQALPCLLNLLKNNYKKSIKKEACWTISNITAGNADQIQAVIDAGIIQSLVW 379

Query: 301 LLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGL 360
           +LQ+AEF++K  AA  ISNAT GGTH+QIK++V +GCIKPLCDLL C D ++VTV L+ L
Sbjct: 380 VLQSAEFEVKKEAAWGISNATSGGTHDQIKFMVSQGCIKPLCDLLTCPDLKVVTVCLEAL 439

Query: 361 EKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYW 419
           E IL VGEAEKN+    G+ N YAQ+++EAEGLEKIENL+SHDN++I++K+VKILET+W
Sbjct: 440 ENILVVGEAEKNLG-HTGEDNLYAQMIDEAEGLEKIENLQSHDNNDIYDKAVKILETFW 497

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q76P29|IMAB_DICDI Importin subunit alpha-B OS=Dictyostelium discoideum GN=DDB_G0272318 PE=3 SV=1

 Score =  452 bits (1162), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 233/420 (55%), Positives = 308/420 (73%), Gaps = 7/420 (1%)

Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
           +VA + S++ ++ L++TT  RKLLS  +S P EEVI  G+VPR V+FL  +D+PQLQFEA
Sbjct: 72  LVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKFLYMQDFPQLQFEA 131

Query: 61  AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
           AWAL NI SGT E T+VVI++GA+ +FV LL+SP DD+REQAV ALGN+A DS  CRDLV
Sbjct: 132 AWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALGNIAGDSHYCRDLV 191

Query: 121 LSEEALIPLLTQLNKHA--KLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSN 178
           LS  AL PLL+ L   A  K+SM+R ATWTLSNFC GKP+P F+ VR +LP LA+L++  
Sbjct: 192 LSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVRASLPVLAKLIYYQ 251

Query: 179 DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG 238
           D+EV+ DAC AL YLS+G+N+ IQ VI+A VC ++VELLGHP+ +V T AL+T+ NI  G
Sbjct: 252 DEEVLIDACWALSYLSDGSNERIQEVIDAKVCRKMVELLGHPTIAVQTPALRTIGNIVTG 311

Query: 239 DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPL 298
           DD QTQ +++  AL +LL LL  + K++I+ +ACWTISNITAG+   IQ VIDA +I  L
Sbjct: 312 DDNQTQIVLSVQALSHLLNLL-QSPKRAIRKEACWTISNITAGDKNQIQQVIDANIIPSL 370

Query: 299 VNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLK 358
           V LL NAEF+I+  AA AISNAT  GT +QI +LV +GC+KPLCDLL  +DP I+ V L+
Sbjct: 371 VYLLANAEFEIQKEAAWAISNATSCGTPQQIHFLVSQGCVKPLCDLLKVSDPRIINVALE 430

Query: 359 GLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETY 418
           G+E IL  G+ E      +  VN Y +++E+A+GL KI +L+ H N +  EK  +I+ TY
Sbjct: 431 GIENILVAGKKEAQ----VTGVNPYKKIIEDADGLGKIYDLQHHMNKDTFEKVSRIISTY 486

Functions in nuclear protein import via a substrate-importin alpha-beta transport complex that passes though the nuclear pore complexes (NPC). Binds specifically and directly to substrates containing either a simple or bipartite NLS motif.

Dictyostelium discoideum (taxid: 44689)

>sp|O35345|IMA7_MOUSE Importin subunit alpha-7 OS=Mus musculus GN=Kpna6 PE=1 SV=2

 Score =  439 bits (1129), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 237/421 (56%), Positives = 297/421 (70%), Gaps = 5/421 (1%)

Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPF-GVVPRFVEFLMREDYPQLQFE 59
           MV  ++SDD+++QL  T   RKLLS   S P +EVI   GVV RFVEFL R +   LQFE
Sbjct: 85  MVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFE 144

Query: 60  AAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDL 119
           AAWAL NI SGTS+ TK+VI+ GAVPIF++LL S  +D++EQAV ALGN+A DS+ CRD 
Sbjct: 145 AAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSLCRDY 204

Query: 120 VLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLVHSN 178
           VL+   L PLLT L K  +L+M R A W LSN C GK P P F +V P LP L++L+ S+
Sbjct: 205 VLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSS 264

Query: 179 DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG 238
           D +++ DAC AL YLS+G N++IQAVI++GVC RLVELL H    V + AL+ V NI  G
Sbjct: 265 DSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTG 324

Query: 239 DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPL 298
           DD QTQ I+NC ALP LL LL  + K+SI+ +ACWTISNITAGN   IQAVIDA +   L
Sbjct: 325 DDIQTQVILNCSALPCLLHLL-SSSKESIRKEACWTISNITAGNRAQIQAVIDANIFPVL 383

Query: 299 VNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLK 358
           + +LQ AEF  +  AA AI+NAT GGT EQI+YLV  GCIKPLCDLL   D +IV V L 
Sbjct: 384 IEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALN 443

Query: 359 GLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETY 418
           GLE IL++GE E     +   VN Y  L+EEA GL+KIE L+SH+N EI++K+  ++E Y
Sbjct: 444 GLENILRLGEQESKR--SGSGVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHY 501

Query: 419 W 419
           +
Sbjct: 502 F 502

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Mus musculus (taxid: 10090)

>sp|Q0V7M0|IMA7_BOVIN Importin subunit alpha-7 OS=Bos taurus GN=KPNA6 PE=2 SV=1

 Score =  437 bits (1125), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 237/421 (56%), Positives = 296/421 (70%), Gaps = 5/421 (1%)

Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPF-GVVPRFVEFLMREDYPQLQFE 59
           MV  ++SDD ++QL  T   RKLLS   S P +EVI   GVV RFVEFL R +   LQFE
Sbjct: 85  MVEMLFSDDPDLQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFE 144

Query: 60  AAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDL 119
           AAWAL NI SGTS+ TK+VI+ GAVPIF++LL S  +D++EQAV ALGN+A DS+ CRD 
Sbjct: 145 AAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDY 204

Query: 120 VLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLVHSN 178
           VL+   L PLLT L K  +L+M R A W LSN C GK P P F +V P LP L++L+ S+
Sbjct: 205 VLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSS 264

Query: 179 DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG 238
           D +++ DAC AL YLS+G N++IQAVI++GVC RLVELL H    V + AL+ V NI  G
Sbjct: 265 DSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDNKVASPALRAVGNIVTG 324

Query: 239 DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPL 298
           DD QTQ I+NC ALP LL LL  + K+SI+ +ACWTISNITAGN   IQAVIDA +   L
Sbjct: 325 DDIQTQVILNCSALPCLLHLL-SSSKESIRKEACWTISNITAGNRAQIQAVIDANIFPVL 383

Query: 299 VNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLK 358
           + +LQ AEF  +  AA AI+NAT GGT EQI+YLV  GCIKPLCDLL   D +IV V L 
Sbjct: 384 IEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALN 443

Query: 359 GLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETY 418
           GLE IL++GE E     +   VN Y  L+EEA GL+KIE L+SH+N EI++K+  ++E Y
Sbjct: 444 GLENILRLGEQEGKR--SGSGVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHY 501

Query: 419 W 419
           +
Sbjct: 502 F 502

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Bos taurus (taxid: 9913)

>sp|Q5RBV0|IMA7_PONAB Importin subunit alpha-7 OS=Pongo abelii GN=KPNA6 PE=2 SV=1

 Score =  435 bits (1118), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 236/421 (56%), Positives = 296/421 (70%), Gaps = 5/421 (1%)

Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPF-GVVPRFVEFLMREDYPQLQFE 59
           MV  ++SDD+++QL  T   RKLLS   S P +EVI    VV RFVEFL R +   LQFE
Sbjct: 85  MVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPRVVDRFVEFLKRNENCTLQFE 144

Query: 60  AAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDL 119
           AAWAL NI SGTS+ TK+VI+ GAVPIF++LL S  +D++EQAV ALGN+A DS+ CRD 
Sbjct: 145 AAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDY 204

Query: 120 VLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLVHSN 178
           VL+   L PLLT L K  +L+M R A W LSN C GK P P F +V P LP L++L+ S+
Sbjct: 205 VLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSS 264

Query: 179 DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG 238
           D +++ DAC AL YLS+G N++IQAVI++GVC RLVELL H    V + AL+ V NI  G
Sbjct: 265 DSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTG 324

Query: 239 DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPL 298
           DD QTQ I+NC ALP LL LL  + K+SI+ +ACWTISNITAGN   IQAVIDA +   L
Sbjct: 325 DDIQTQVILNCSALPCLLHLL-SSPKESIRKEACWTISNITAGNRAQIQAVIDANIFPVL 383

Query: 299 VNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLK 358
           + +LQ AEF  +  AA AI+NAT GGT EQI+YLV  GCIKPLCDLL   D +IV V L 
Sbjct: 384 IEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALN 443

Query: 359 GLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETY 418
           GLE IL++GE E     +   VN Y  L+EEA GL+KIE L+SH+N EI++K+  ++E Y
Sbjct: 444 GLENILRLGEQEGKR--SGSGVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHY 501

Query: 419 W 419
           +
Sbjct: 502 F 502

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Pongo abelii (taxid: 9601)

>sp|O60684|IMA7_HUMAN Importin subunit alpha-7 OS=Homo sapiens GN=KPNA6 PE=1 SV=1

 Score =  435 bits (1118), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 236/421 (56%), Positives = 296/421 (70%), Gaps = 5/421 (1%)

Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPF-GVVPRFVEFLMREDYPQLQFE 59
           MV  ++SDD+++QL  T   RKLLS   S P +EVI    VV RFVEFL R +   LQFE
Sbjct: 85  MVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPRVVDRFVEFLKRNENCTLQFE 144

Query: 60  AAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDL 119
           AAWAL NI SGTS+ TK+VI+ GAVPIF++LL S  +D++EQAV ALGN+A DS+ CRD 
Sbjct: 145 AAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDY 204

Query: 120 VLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLVHSN 178
           VL+   L PLLT L K  +L+M R A W LSN C GK P P F +V P LP L++L+ S+
Sbjct: 205 VLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSS 264

Query: 179 DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG 238
           D +++ DAC AL YLS+G N++IQAVI++GVC RLVELL H    V + AL+ V NI  G
Sbjct: 265 DSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTG 324

Query: 239 DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPL 298
           DD QTQ I+NC ALP LL LL  + K+SI+ +ACWTISNITAGN   IQAVIDA +   L
Sbjct: 325 DDIQTQVILNCSALPCLLHLL-SSPKESIRKEACWTISNITAGNRAQIQAVIDANIFPVL 383

Query: 299 VNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLK 358
           + +LQ AEF  +  AA AI+NAT GGT EQI+YLV  GCIKPLCDLL   D +IV V L 
Sbjct: 384 IEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALN 443

Query: 359 GLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETY 418
           GLE IL++GE E     +   VN Y  L+EEA GL+KIE L+SH+N EI++K+  ++E Y
Sbjct: 444 GLENILRLGEQEGKR--SGSGVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHY 501

Query: 419 W 419
           +
Sbjct: 502 F 502

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	447
224130302	529	predicted protein [Populus trichocarpa]	0.935	0.790	0.792	0.0
356529274	531	PREDICTED: importin subunit alpha-1-like	0.935	0.787	0.792	0.0
356556046	531	PREDICTED: importin subunit alpha-1-like	0.935	0.787	0.794	0.0
356564581	530	PREDICTED: importin subunit alpha-1-like	0.935	0.788	0.785	0.0
225431871	529	PREDICTED: importin subunit alpha-1 [Vit	0.935	0.790	0.787	0.0
224110258	529	predicted protein [Populus trichocarpa]	0.935	0.790	0.780	0.0
356535026	532	PREDICTED: importin subunit alpha-1-like	0.935	0.785	0.785	0.0
255542844	531	importin alpha, putative [Ricinus commun	0.937	0.789	0.778	0.0
356576835	532	PREDICTED: importin subunit alpha-1-like	0.935	0.785	0.785	0.0
356521809	530	PREDICTED: LOW QUALITY PROTEIN: importin	0.935	0.788	0.778	0.0

>gi|224130302|ref|XP_002328576.1| predicted protein [Populus trichocarpa] gi|222838558|gb|EEE76923.1| predicted protein [Populus trichocarpa]

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/419 (79%), Positives = 368/419 (87%), Gaps = 1/419 (0%)

Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
           MV+GVWSDD+N+QLEATT  RKLLS  RS P EEVI  GVVPRFVE L+RED+PQLQFEA
Sbjct: 78  MVSGVWSDDSNLQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVELLVREDFPQLQFEA 137

Query: 61  AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
           AWAL NI SGTSE+TKVVIDHGAVPIFVKLL SPSDD+REQAV ALGNVA DS +CRDLV
Sbjct: 138 AWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQAVWALGNVAGDSPKCRDLV 197

Query: 121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDK 180
           LS  ALIPLL QLN+HAKLSMLR ATWTLSNFC GKP+P+F++VRPALPAL +LVHS D+
Sbjct: 198 LSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPLFEKVRPALPALERLVHSTDE 257

Query: 181 EVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD 240
           EV+TDAC AL YLS+GTND+IQAVIEAGVCPRLVELL HPSPSVL  AL+TV NI  GDD
Sbjct: 258 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLVPALRTVGNIVTGDD 317

Query: 241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVN 300
            QTQCIIN GALP LL LL HNHKKSIK +ACWTISNITAGN E IQAVI+AGLIGPLVN
Sbjct: 318 MQTQCIINTGALPCLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQAVIEAGLIGPLVN 377

Query: 301 LLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGL 360
           LLQNAEFDIK  AA A+SNAT GGTHEQIK+LV +GCIKPLCDLL+C DP IVTV L+GL
Sbjct: 378 LLQNAEFDIKKEAAWAVSNATSGGTHEQIKFLVSQGCIKPLCDLLVCPDPRIVTVCLEGL 437

Query: 361 EKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYW 419
           E ILKVGEAEKN+  + GDVN YAQ++++AEGLEKIENL+SHDN+EI+EK+VKILETYW
Sbjct: 438 ENILKVGEAEKNLGNS-GDVNFYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYW 495

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529274|ref|XP_003533220.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/419 (79%), Positives = 365/419 (87%), Gaps = 1/419 (0%)

Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
           MVAGVWSDDN+ QLEATT  RKLLS  RS P EEVI  GVVPRFVEFL+RED+PQLQFEA
Sbjct: 79  MVAGVWSDDNSQQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEA 138

Query: 61  AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
           AWAL NI SGTSE+TKVVIDHGAVPIFVKLL+SPSDD+REQAV ALGNVA DS +CRDLV
Sbjct: 139 AWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPKCRDLV 198

Query: 121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDK 180
           LS  ALIPLL QLN+HAKLSMLR ATWTLSNFC GKP+P F+QVR ALPAL +LV SND+
Sbjct: 199 LSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRAALPALERLVFSNDE 258

Query: 181 EVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD 240
           EV+TDAC AL YLS+GTND+IQAVIEAGVCPRLV+LL HPSPSVL  AL+TV NI  GDD
Sbjct: 259 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVQLLLHPSPSVLIPALRTVGNIVTGDD 318

Query: 241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVN 300
            QTQ IIN GALP LL LL HNHKKSIK +ACWTISNITAGN + IQAV++AGLI PLVN
Sbjct: 319 MQTQTIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNRDQIQAVVEAGLIAPLVN 378

Query: 301 LLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGL 360
           LLQNAEFDIK  AA AISNAT GGTHEQIKYLV +GCIKPLCDLL+C DP IVTV L+GL
Sbjct: 379 LLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGL 438

Query: 361 EKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYW 419
           E ILKVGEAEK+M  + GDVN YAQ+++EAEGLEKIENL+SHDN+EI+EK+VKILETYW
Sbjct: 439 ENILKVGEAEKSMGNS-GDVNLYAQMIDEAEGLEKIENLQSHDNNEIYEKAVKILETYW 496

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556046|ref|XP_003546338.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/419 (79%), Positives = 364/419 (86%), Gaps = 1/419 (0%)

Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
           MVAGVWSDDN+ QLEATT  RKLLS  RS P EEVI  GVVPRFVEFL+RED+PQLQFEA
Sbjct: 79  MVAGVWSDDNSQQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEA 138

Query: 61  AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
           AWAL NI SGTSE+TKVVIDHGAVPIFVKLL+SPSDD+REQAV ALGNVA DS RCRDLV
Sbjct: 139 AWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV 198

Query: 121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDK 180
           LS  ALIPLL QLN+HAKLSMLR ATWTLSNFC GKP+P F+QVR ALPAL +LV SND+
Sbjct: 199 LSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRAALPALERLVFSNDE 258

Query: 181 EVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD 240
           EV+TDAC AL YLS+GTND+IQAVIEAGVCPRLV+LL HPSPSVL  AL+TV NI  GDD
Sbjct: 259 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVQLLLHPSPSVLIPALRTVGNIVTGDD 318

Query: 241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVN 300
            QTQ IIN GALP LL LL HNHKKSIK +ACWTISNITAGN + IQAVI+AGLI PLVN
Sbjct: 319 MQTQTIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNRDQIQAVIEAGLIAPLVN 378

Query: 301 LLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGL 360
           LLQNAEFDIK  AA AISNAT GGTHEQIKYLV +GCIKPLCDLL+C DP IVTV L+GL
Sbjct: 379 LLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGL 438

Query: 361 EKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYW 419
           E ILKVGEAEK++    GDVN YAQ+++EAEGLEKIENL+SHDN+EI+EK+VKILETYW
Sbjct: 439 ENILKVGEAEKSLG-NTGDVNLYAQMIDEAEGLEKIENLQSHDNNEIYEKAVKILETYW 496

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564581|ref|XP_003550530.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/419 (78%), Positives = 366/419 (87%), Gaps = 1/419 (0%)

Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
           MVAGVWSDDN++QLEATT  RKLLS  RS P EEVI  GVVPRFVEFL+RED+PQLQFEA
Sbjct: 78  MVAGVWSDDNSIQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEA 137

Query: 61  AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
           AWAL NI SGTSE+TKVVIDHGAVPIFVKLL+SPSDD+REQAV ALGNVA DS RCRDLV
Sbjct: 138 AWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV 197

Query: 121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDK 180
           LS+ AL+PLL QLN+HAKLSMLR ATWTLSNFC GKP+P F+QVRPALPAL +LV SND+
Sbjct: 198 LSQGALVPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRPALPALERLVFSNDE 257

Query: 181 EVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD 240
           EV+TDAC AL YLS+GTND+IQAVIEAGVC RLV+LL HPSPSVL  AL+TV NI  GDD
Sbjct: 258 EVLTDACWALSYLSDGTNDKIQAVIEAGVCARLVQLLIHPSPSVLIPALRTVGNIVTGDD 317

Query: 241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVN 300
            QTQCIIN GALP LL LL +NHKKSIK +ACWTISNITAGN E IQ VI+AGL+ PLVN
Sbjct: 318 MQTQCIINHGALPCLLNLLTNNHKKSIKKEACWTISNITAGNKEQIQTVIEAGLVAPLVN 377

Query: 301 LLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGL 360
           LLQNAEFDIK  AA AISNAT GG HEQIKYLV +GCIKPLCDLL+C DP IVTV L+GL
Sbjct: 378 LLQNAEFDIKKEAAWAISNATSGGIHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGL 437

Query: 361 EKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYW 419
           E ILKVGEAEK++    GDVN+YAQ++++AEGLEKIENL+SHDN+EI+EK+VKILETYW
Sbjct: 438 ENILKVGEAEKSLG-NTGDVNEYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYW 495

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431871|ref|XP_002275593.1| PREDICTED: importin subunit alpha-1 [Vitis vinifera] gi|296083287|emb|CBI22923.3| unnamed protein product [Vitis vinifera]

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/419 (78%), Positives = 364/419 (86%), Gaps = 1/419 (0%)

Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
           MVAGVWSD++++QLEATT  RKLLS  RS P EEVI  GVVPRFVEFL+RED+PQLQFEA
Sbjct: 77  MVAGVWSDNSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLVREDFPQLQFEA 136

Query: 61  AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
           AWAL NI SGTSE+TKVVIDHGAVPIFVKLL SPSDD+REQAV ALGNVA DS RCRDLV
Sbjct: 137 AWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLV 196

Query: 121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDK 180
           L   ALIPLL QLN+HAKLSMLR ATWTLSNFC GKP+P FDQV+PALPAL +LVHS+D+
Sbjct: 197 LGHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALERLVHSSDE 256

Query: 181 EVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD 240
           EV+TDAC AL YLS+GTND+IQAVIEAGVCPRLVELL HPSPSVL  AL+TV NI  GDD
Sbjct: 257 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDD 316

Query: 241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVN 300
            QTQ IIN GALP LL LL HNHKKSIK +ACWTISNITAGN E IQAVI+AG+I PLV+
Sbjct: 317 IQTQSIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQAVIEAGVIAPLVH 376

Query: 301 LLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGL 360
           LLQ AEFDIK  AA AISNAT GGTHEQIKYLV +GCIKPLCDLL+C DP IVTV L+GL
Sbjct: 377 LLQTAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGL 436

Query: 361 EKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYW 419
           E ILKVGEAEK +  + GDVN YAQL+++AEGLEKIENL+SHDN+EI+EK+VKILETYW
Sbjct: 437 ENILKVGEAEKTLGNS-GDVNYYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKILETYW 494

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110258|ref|XP_002315463.1| predicted protein [Populus trichocarpa] gi|222864503|gb|EEF01634.1| predicted protein [Populus trichocarpa]

 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/419 (78%), Positives = 363/419 (86%), Gaps = 1/419 (0%)

Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
           MVAGVWS+D N+QLE+TT  RKLLS  RS P EEVI  GVVPRFVEFL+RED+PQLQFEA
Sbjct: 78  MVAGVWSEDGNLQLESTTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEA 137

Query: 61  AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
           AWAL NI SGTSE+TKVVIDHGAVPIFVKLL SPSDD+REQAV ALGNVA DS +CRDLV
Sbjct: 138 AWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQAVWALGNVAGDSPKCRDLV 197

Query: 121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDK 180
           LS  ALIPLL QLN+HAKLSMLR ATWTLSNFC GKP+P F+QVRPALPAL +LVHS D+
Sbjct: 198 LSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRPALPALERLVHSTDE 257

Query: 181 EVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD 240
           EV+TD+C AL YLS+GT+D+IQAVIEAGVCPRLVELL HPSPSVL  AL+TV NI  GDD
Sbjct: 258 EVLTDSCWALSYLSDGTDDKIQAVIEAGVCPRLVELLLHPSPSVLVPALRTVGNIVTGDD 317

Query: 241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVN 300
            QTQCII  GALP LL LL HNHKKSIK +ACWTISNITAGN E IQAVI+ GLIGPLVN
Sbjct: 318 MQTQCIITTGALPCLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQAVIENGLIGPLVN 377

Query: 301 LLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGL 360
           LLQNAEFDIK  AA A+SNAT GGTHEQIK+LV +GCIKPLCDLL+  DP IVTV L+GL
Sbjct: 378 LLQNAEFDIKKEAAWAVSNATSGGTHEQIKFLVSQGCIKPLCDLLVSPDPRIVTVSLEGL 437

Query: 361 EKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYW 419
           E ILKVGEAEKN+  + GD N YAQ++++AEGLEKIENL+SHDN+EI+EK+VKILETYW
Sbjct: 438 ENILKVGEAEKNLGNS-GDANFYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYW 495

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535026|ref|XP_003536050.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/419 (78%), Positives = 363/419 (86%), Gaps = 1/419 (0%)

Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
           MV GVW+DDNN+QLEATT  RKLLS  RS P EEVI  GVV RFVEFLMRED+PQLQFEA
Sbjct: 79  MVTGVWTDDNNLQLEATTQFRKLLSIERSPPIEEVIQTGVVSRFVEFLMREDFPQLQFEA 138

Query: 61  AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
           AWAL NI SGTSE+TKVVIDHGAVPIFVKLLASPSDD+REQAV ALGNVA DS RCRDLV
Sbjct: 139 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 198

Query: 121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDK 180
           LS  AL+PLL QLN+HAKLSMLR ATWTLSNFC GKP+P FDQV+PALPALA+L+HSND+
Sbjct: 199 LSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALARLIHSNDE 258

Query: 181 EVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD 240
           EV+TDAC AL YLS+GTND+IQAVIEAGVCPRLVELL HPSPSVL  AL+TV NI  GDD
Sbjct: 259 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDD 318

Query: 241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVN 300
            QTQ IIN  ALP LL LL +N+KKSIK +ACWTISNITAGN + IQAVI+A LI PLVN
Sbjct: 319 MQTQVIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAGNKQQIQAVIEANLIAPLVN 378

Query: 301 LLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGL 360
           LLQNAEFDIK  AA AISNAT GG+HEQIK+LV +GCIKPLCDLL+C DP IVTV L+GL
Sbjct: 379 LLQNAEFDIKKEAAWAISNATSGGSHEQIKFLVSQGCIKPLCDLLICPDPRIVTVCLEGL 438

Query: 361 EKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYW 419
           E ILKVGEA+KN+    GDVN YAQ+++EAEGLEKIENL+SHDN EI+EK+VKILETYW
Sbjct: 439 ENILKVGEADKNIG-NTGDVNLYAQMIDEAEGLEKIENLQSHDNTEIYEKAVKILETYW 496

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542844|ref|XP_002512485.1| importin alpha, putative [Ricinus communis] gi|223548446|gb|EEF49937.1| importin alpha, putative [Ricinus communis]

 Score =  660 bits (1702), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/419 (77%), Positives = 365/419 (87%)

Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
           MVAGVWSDD+N+QLEATT  RKLLS  RS P EEVI  GVVPRFVEFLMRED+PQLQFEA
Sbjct: 77  MVAGVWSDDSNLQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLMREDFPQLQFEA 136

Query: 61  AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
           AWAL NI SGTSE+T+VVIDHGAVPIFVKLLASPSDD+REQAV ALGNVA DS +CRDLV
Sbjct: 137 AWALTNIASGTSENTRVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPKCRDLV 196

Query: 121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDK 180
           L   AL+PLL QLN+HAKLSMLR ATWTLSNFC GKP+P F+QV+PALPALA+L+HSND+
Sbjct: 197 LGNGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPFFEQVKPALPALARLIHSNDE 256

Query: 181 EVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD 240
           EV+TDAC AL YLS+GTND+IQAVIEAGVCPRLVELL HPSPSVL  AL+TV NI  GDD
Sbjct: 257 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDD 316

Query: 241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVN 300
            QTQCIIN  ALP LL LL +N+KKSIK +ACWTISNITAGN E IQAVI+A +IGPLV+
Sbjct: 317 MQTQCIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAGNKEQIQAVIEANIIGPLVH 376

Query: 301 LLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGL 360
           LL+NAEFDIK  AA AISNAT GGTH+QIKYLV +GCIKPLCDLL+C DP IVTV L+GL
Sbjct: 377 LLENAEFDIKKEAAWAISNATSGGTHDQIKYLVSQGCIKPLCDLLICPDPRIVTVCLEGL 436

Query: 361 EKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYW 419
           E ILKVGEA+KN+    G VN YAQ++++AEGLEKIENL+SHDN EI+EK+VKILETYW
Sbjct: 437 ENILKVGEADKNLGNNDGGVNLYAQMIDDAEGLEKIENLQSHDNIEIYEKAVKILETYW 495

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576835|ref|XP_003556535.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/419 (78%), Positives = 363/419 (86%), Gaps = 1/419 (0%)

Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
           MV GVW+DDNN+QLEATT  RKLLS  RS P EEVI  GVV RFVEFLMRED+PQLQFEA
Sbjct: 79  MVTGVWTDDNNLQLEATTQFRKLLSIERSPPIEEVIQTGVVSRFVEFLMREDFPQLQFEA 138

Query: 61  AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
           AWAL NI SGTSE+TKVVIDHGAVPIFVKLLASPSDD+REQAV ALGNVA DS RCRDLV
Sbjct: 139 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLV 198

Query: 121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDK 180
           LS  AL+PLL QLN+HAKLSMLR ATWTLSNFC GKP+P FDQV+PALPALA+L+HSND+
Sbjct: 199 LSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALARLIHSNDE 258

Query: 181 EVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD 240
           EV+TDAC AL YLS+GTND+IQAVIEAGVCPRLVELL HPSPSVL  AL+TV NI  GDD
Sbjct: 259 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDD 318

Query: 241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVN 300
            QTQ IIN  ALP LL LL +N+KKSIK +ACWTISNITAGN + IQAVI+A LI PLVN
Sbjct: 319 MQTQVIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAGNKQQIQAVIEANLIAPLVN 378

Query: 301 LLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGL 360
           LLQNAEFDIK  AA AISNAT GG+HEQIK+LV +GCIKPLCDLL+C DP IVTV L+GL
Sbjct: 379 LLQNAEFDIKKEAAWAISNATSGGSHEQIKFLVSQGCIKPLCDLLICPDPRIVTVCLEGL 438

Query: 361 EKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYW 419
           E ILKVGEA+KN+    GDVN YAQ+++EAEGLEKIENL+SHDN EI+EK+VKILETYW
Sbjct: 439 ENILKVGEADKNIG-NTGDVNLYAQMIDEAEGLEKIENLQSHDNTEIYEKAVKILETYW 496

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521809|ref|XP_003529543.1| PREDICTED: LOW QUALITY PROTEIN: importin subunit alpha-1-like [Glycine max]

 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/419 (77%), Positives = 365/419 (87%), Gaps = 1/419 (0%)

Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
           MVAGVWS+DN++QLEATT  RKLLS  RS P EEVI  GVVPRFVEFL+RED+PQLQFEA
Sbjct: 78  MVAGVWSNDNSLQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEA 137

Query: 61  AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
           AWAL NI SGTSE+TKVVIDHGAVPIFVKLL+SPSDD+REQAV ALGNVA DS RCRDLV
Sbjct: 138 AWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLV 197

Query: 121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDK 180
           LS  AL+PLL QLN+HAKLSMLR ATWTLSNFC GKP+P F+QVRPALPAL +LV SND+
Sbjct: 198 LSHGALVPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRPALPALERLVFSNDE 257

Query: 181 EVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD 240
           EV+TDAC AL YLS+GTND+IQAVIEAGVCPRL++LL HPSPSVL  AL+TV NI  GDD
Sbjct: 258 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLMQLLMHPSPSVLIPALRTVGNIVTGDD 317

Query: 241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVN 300
            QTQCIIN GALP LL LL +NHKKSIK +ACWTISNITAGN E IQ VI+AGL+ PLVN
Sbjct: 318 MQTQCIINHGALPCLLNLLTNNHKKSIKKEACWTISNITAGNKEQIQTVIEAGLVAPLVN 377

Query: 301 LLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGL 360
           LLQ+AEFDIK  A+ AISNAT GGTH+QIKYLV +GC+KPLCDLL+C DP IVTV L+GL
Sbjct: 378 LLQSAEFDIKKEASWAISNATSGGTHDQIKYLVSQGCVKPLCDLLVCPDPRIVTVCLEGL 437

Query: 361 EKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYW 419
           E ILKVGEAEK++    GDVN YAQ+++EAEGLEKIENL+SHDN+EI+EK VKILETYW
Sbjct: 438 ENILKVGEAEKSLG-NTGDVNVYAQMIDEAEGLEKIENLQSHDNNEIYEKVVKILETYW 495

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	447
TAIR|locus:2083313	532	IMPA-1 "importin alpha isoform	0.935	0.785	0.744	1.5e-163
TAIR|locus:505006475	535	IMPA-2 "importin alpha isoform	0.935	0.781	0.754	1.9e-163
TAIR|locus:2195351	538	IMPA-4 "AT1G09270" [Arabidopsi	0.935	0.776	0.706	1.2e-152
TAIR|locus:2132238	531	MOS6 "MODIFIER OF SNC1, 6" [Ar	0.935	0.787	0.658	3.2e-145
TAIR|locus:2196140	539	IMPA-6 "importin alpha isoform	0.935	0.775	0.647	3.7e-142
TAIR|locus:2155929	519	IMPA-5 "importin alpha isoform	0.926	0.797	0.624	3.4e-132
TAIR|locus:2078122	528	IMPA-7 "importin alpha isoform	0.937	0.793	0.589	5.7e-123
ASPGD|ASPL0000045550	553	kapA [Emericella nidulans (tax	0.932	0.754	0.587	2.5e-120
UNIPROTKB|G4MZS0	551	MGG_15072 "Importin subunit al	0.932	0.756	0.583	2.3e-117
DICTYBASE|DDB_G0272318	516	DDB_G0272318 "putative importi	0.923	0.800	0.554	8.2e-115

TAIR|locus:2083313 IMPA-1 "importin alpha isoform 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1592 (565.5 bits), Expect = 1.5e-163, P = 1.5e-163
 Identities = 312/419 (74%), Positives = 354/419 (84%)

Query:     1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
             MVAGVWSDD  +QLE+TT  RKLLS  RS P EEVI  GVVPRFVEFL +EDYP +QFEA
Sbjct:    77 MVAGVWSDDPALQLESTTQFRKLLSIERSPPIEEVISAGVVPRFVEFLKKEDYPAIQFEA 136

Query:    61 AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
             AWAL NI SGTS+ TKVVIDH AVPIFV+LLASPSDD+REQAV ALGNVA DS RCRDLV
Sbjct:   137 AWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQAVWALGNVAGDSPRCRDLV 196

Query:   121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDK 180
             L   AL+PLL QLN+HAKLSMLR ATWTLSNFC GKP+P FDQV+PALPAL +L+HS+D+
Sbjct:   197 LGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQPHFDQVKPALPALERLIHSDDE 256

Query:   181 EVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD 240
             EV+TDAC AL YLS+GTND+IQ VI+AGV P+LVELL H SPSVL  AL+TV NI  GDD
Sbjct:   257 EVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLVELLLHHSPSVLIPALRTVGNIVTGDD 316

Query:   241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVN 300
              QTQC+IN GALP L  LL  NHKKSIK +ACWTISNITAGN + IQ V++A LI PLV+
Sbjct:   317 IQTQCVINSGALPCLANLLTQNHKKSIKKEACWTISNITAGNKDQIQTVVEANLISPLVS 376

Query:   301 LLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGL 360
             LLQNAEFDIK  AA AISNAT GG+H+QIKYLV +GCIKPLCDLL+C DP I+TV L+GL
Sbjct:   377 LLQNAEFDIKKEAAWAISNATSGGSHDQIKYLVEQGCIKPLCDLLVCPDPRIITVCLEGL 436

Query:   361 EKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYW 419
             E ILKVGEAEKN+    GD+N YAQL+++AEGLEKIENL+SHDN+EI+EK+VKILETYW
Sbjct:   437 ENILKVGEAEKNLGHT-GDMNYYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKILETYW 494

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:505006475 IMPA-2 "importin alpha isoform 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1591 (565.1 bits), Expect = 1.9e-163, P = 1.9e-163
 Identities = 316/419 (75%), Positives = 356/419 (84%)

Query:     1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
             MV GVWSDD ++QLEATT  RKLLS  RS P EEVI  GVVPRFVEFL REDYPQLQFEA
Sbjct:    82 MVGGVWSDDRSLQLEATTQFRKLLSIERSPPIEEVIDAGVVPRFVEFLTREDYPQLQFEA 141

Query:    61 AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
             AWAL NI SGTSE+TKVVI+HGAVPIFV+LLAS SDD+REQAV ALGNVA DS RCRDLV
Sbjct:   142 AWALTNIASGTSENTKVVIEHGAVPIFVQLLASQSDDVREQAVWALGNVAGDSPRCRDLV 201

Query:   121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDK 180
             L + ALIPLL+QLN+HAKLSMLR ATWTLSNFC GKP+P FDQVRPALPAL +L+HS D+
Sbjct:   202 LGQGALIPLLSQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALERLIHSTDE 261

Query:   181 EVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD 240
             EV+TDAC AL YLS+GTND+IQ+VIEAGV PRLVELL H SPSVL  AL+++ NI  GDD
Sbjct:   262 EVLTDACWALSYLSDGTNDKIQSVIEAGVVPRLVELLQHQSPSVLIPALRSIGNIVTGDD 321

Query:   241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVN 300
              QTQC+I+ GAL  LL LL HNHKKSIK +ACWTISNITAGN + IQAV +AGLI PLVN
Sbjct:   322 LQTQCVISHGALLSLLSLLTHNHKKSIKKEACWTISNITAGNRDQIQAVCEAGLICPLVN 381

Query:   301 LLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGL 360
             LLQNAEFDIK  AA AISNAT GG+ +QIKY+V +G +KPLCDLL+C DP I+TV L+GL
Sbjct:   382 LLQNAEFDIKKEAAWAISNATSGGSPDQIKYMVEQGVVKPLCDLLVCPDPRIITVCLEGL 441

Query:   361 EKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYW 419
             E ILKVGEAEK +    GDVN YAQL+++AEGLEKIENL+SHDN EI+EK+VKILETYW
Sbjct:   442 ENILKVGEAEK-VTGNTGDVNFYAQLIDDAEGLEKIENLQSHDNSEIYEKAVKILETYW 499

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA;ISS

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2195351 IMPA-4 "AT1G09270" [Arabidopsis thaliana (taxid:3702)]

 Score = 1489 (529.2 bits), Expect = 1.2e-152, P = 1.2e-152
 Identities = 296/419 (70%), Positives = 343/419 (81%)

Query:     1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
             MV GV+SDD   QLEATT  RKLLS  RS P +EVI  GV+PRFVEFL R D+PQLQFEA
Sbjct:    84 MVQGVYSDDPQAQLEATTQFRKLLSIERSPPIDEVIKAGVIPRFVEFLGRHDHPQLQFEA 143

Query:    61 AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
             AWAL N+ SGTS+ T+VVI+ GAVPIFVKLL S SDD+REQAV ALGNVA DS  CR+LV
Sbjct:   144 AWALTNVASGTSDHTRVVIEQGAVPIFVKLLTSASDDVREQAVWALGNVAGDSPNCRNLV 203

Query:   121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDK 180
             L+  AL PLL QLN+++KLSMLR ATWTLSNFC GKP   F+QV+PALP L QL++ ND+
Sbjct:   204 LNYGALEPLLAQLNENSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILRQLIYLNDE 263

Query:   181 EVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD 240
             EV+TDAC AL YLS+G ND+IQAVIEAGVCPRLVELLGH SP+VL  AL+TV NI  GDD
Sbjct:   264 EVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLGHQSPTVLIPALRTVGNIVTGDD 323

Query:   241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVN 300
              QTQ II  G LP+L  LL  NHKKSIK +ACWTISNITAGN   I+AV+ AG+I PLV+
Sbjct:   324 SQTQFIIESGVLPHLYNLLTQNHKKSIKKEACWTISNITAGNKLQIEAVVGAGIILPLVH 383

Query:   301 LLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGL 360
             LLQNAEFDIK  AA AISNAT GG+HEQI+YLV +GCIKPLCDLL+C DP IVTV L+GL
Sbjct:   384 LLQNAEFDIKKEAAWAISNATSGGSHEQIQYLVTQGCIKPLCDLLICPDPRIVTVCLEGL 443

Query:   361 EKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYW 419
             E ILKVGEA+K M +  G VN YAQ++EE++GL+K+ENL+SHDN+EI+EK+VKILE YW
Sbjct:   444 ENILKVGEADKEMGLNSG-VNLYAQIIEESDGLDKVENLQSHDNNEIYEKAVKILERYW 501

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS;RCA

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0030581 "symbiont intracellular protein transport in host" evidence=IPI

GO:0080034 "host response to induction by symbiont of tumor, nodule or growth in host" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2132238 MOS6 "MODIFIER OF SNC1, 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1419 (504.6 bits), Expect = 3.2e-145, P = 3.2e-145
 Identities = 276/419 (65%), Positives = 344/419 (82%)

Query:     1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
             MVAG+WS+D+N QLEAT  +RKLLS  ++ P  EV+  GVVPR V+FL R+D+P+LQFEA
Sbjct:    80 MVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINEVVQSGVVPRVVKFLSRDDFPKLQFEA 139

Query:    61 AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
             AWAL NI SGTSE+T V+I+ GAVPIF++LL+S S+D+REQAV ALGNVA DS +CRDLV
Sbjct:   140 AWALTNIASGTSENTNVIIESGAVPIFIQLLSSASEDVREQAVWALGNVAGDSPKCRDLV 199

Query:   121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDK 180
             LS  A+ PLL+Q N++ KLSMLR ATWTLSNFC GKP P F+Q +PALP L +LV S D+
Sbjct:   200 LSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCRGKPPPAFEQTQPALPVLERLVQSMDE 259

Query:   181 EVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD 240
             EV+TDAC AL YLS+ +ND+IQAVIEAGV PRL++LLGH SPSVL  AL+T+ NI  GDD
Sbjct:   260 EVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLIQLLGHSSPSVLIPALRTIGNIVTGDD 319

Query:   241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVN 300
              QTQ +++  ALP LL LL +N+KKSIK +ACWTISNITAGN++ IQAVIDAG+I  LV 
Sbjct:   320 LQTQMVLDQQALPCLLNLLKNNYKKSIKKEACWTISNITAGNADQIQAVIDAGIIQSLVW 379

Query:   301 LLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGL 360
             +LQ+AEF++K  AA  ISNAT GGTH+QIK++V +GCIKPLCDLL C D ++VTV L+ L
Sbjct:   380 VLQSAEFEVKKEAAWGISNATSGGTHDQIKFMVSQGCIKPLCDLLTCPDLKVVTVCLEAL 439

Query:   361 EKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYW 419
             E IL VGEAEKN+    G+ N YAQ+++EAEGLEKIENL+SHDN++I++K+VKILET+W
Sbjct:   440 ENILVVGEAEKNLGHT-GEDNLYAQMIDEAEGLEKIENLQSHDNNDIYDKAVKILETFW 497

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0006952 "defense response" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2196140 IMPA-6 "importin alpha isoform 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1390 (494.4 bits), Expect = 3.7e-142, P = 3.7e-142
 Identities = 272/420 (64%), Positives = 338/420 (80%)

Query:     1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
             M+AGV S+D ++QLEAT   R+LLS  R+ P  EV+  GVVP  V+FL R+D+ QLQFEA
Sbjct:    81 MIAGVMSEDRDLQLEATASFRRLLSIERNPPINEVVQSGVVPHIVQFLSRDDFTQLQFEA 140

Query:    61 AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
             AWAL NI SGTSE+T+V+ID GAVP+FVKLL+S S+++REQAV ALGNVA DS +CRD V
Sbjct:   141 AWALTNIASGTSENTRVIIDSGAVPLFVKLLSSASEEVREQAVWALGNVAGDSPKCRDHV 200

Query:   121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQ-VRPALPALAQLVHSND 179
             LS EA++ LL Q ++H+KLSMLR ATWTLSNFC GKP+P F+Q  + ALPAL +L+HS D
Sbjct:   201 LSCEAMMSLLAQFHEHSKLSMLRNATWTLSNFCRGKPQPAFEQQTKAALPALERLLHSTD 260

Query:   180 KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGD 239
             +EV+TDA  AL YLS+GTN++IQ VI+AGV PRLV+LL HPSPSVL  AL+T+ NI  GD
Sbjct:   261 EEVLTDASWALSYLSDGTNEKIQTVIDAGVIPRLVQLLAHPSPSVLIPALRTIGNIVTGD 320

Query:   240 DFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLV 299
             D QTQ +I+  ALP LL LL + +KKSIK +ACWTISNITAGN+  IQ V  AG+I PL+
Sbjct:   321 DIQTQAVISSQALPGLLNLLKNTYKKSIKKEACWTISNITAGNTSQIQEVFQAGIIRPLI 380

Query:   300 NLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKG 359
             NLL+  EF+IK  A  AISNAT GG H+QIK+LV +GCI+PLCDLL C DP +VTV L+G
Sbjct:   381 NLLEIGEFEIKKEAVWAISNATSGGNHDQIKFLVSQGCIRPLCDLLPCPDPRVVTVTLEG 440

Query:   360 LEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYW 419
             LE ILKVGEAEKN+    G+ N YAQ++E+A+GL+KIENL+SHDN+EI+EK+VKILE+YW
Sbjct:   441 LENILKVGEAEKNLGNT-GNDNLYAQMIEDADGLDKIENLQSHDNNEIYEKAVKILESYW 499

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0007067 "mitosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2155929 IMPA-5 "importin alpha isoform 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1296 (461.3 bits), Expect = 3.4e-132, P = 3.4e-132
 Identities = 261/418 (62%), Positives = 315/418 (75%)

Query:     1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
             M+ GV+SDD ++QLE TT  R +LS  RS PT+ VI  GVVPRFVEFL ++D P+LQFEA
Sbjct:    75 MITGVFSDDPSLQLEYTTRFRVVLSFDRSPPTDNVIKSGVVPRFVEFLKKDDNPKLQFEA 134

Query:    61 AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
             AWAL NI SG SE TKVVIDHG VP+FV+LLASP DD+REQA+  LGNVA DS +CRD V
Sbjct:   135 AWALTNIASGASEHTKVVIDHGVVPLFVQLLASPDDDVREQAIWGLGNVAGDSIQCRDFV 194

Query:   121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDK 180
             L+  A IPLL QLN HA LS+LR ATWTLSNF  GKP P FD V+  LP L +LV+S+D+
Sbjct:   195 LNSGAFIPLLHQLNNHATLSILRNATWTLSNFFRGKPSPPFDLVKHVLPVLKRLVYSDDE 254

Query:   181 EVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD 240
             +V+ DAC AL  LS+ +N+ IQ+VIEAGV PRLVELL H SP VL  AL+ + NI +G+ 
Sbjct:   255 QVLIDACWALSNLSDASNENIQSVIEAGVVPRLVELLQHASPVVLVPALRCIGNIVSGNS 314

Query:   241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVN 300
              QT C+INCG LP L  LL  NH + I+ +ACWTISNITAG  E IQ+VIDA LI  LVN
Sbjct:   315 QQTHCVINCGVLPVLADLLTQNHMRGIRREACWTISNITAGLEEQIQSVIDANLIPSLVN 374

Query:   301 LLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGL 360
             L Q+AEFDIK  A  AISNA+ GG+  QIKYLV + CIK LCD+L+C D  I+ V L GL
Sbjct:   375 LAQHAEFDIKKEAIWAISNASVGGSPNQIKYLVEQNCIKALCDILVCPDLRIILVSLGGL 434

Query:   361 EKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETY 418
             E IL  GE +KN+     DVN Y+Q++E+AEGLEKIENL+ H N+EI+EK+VKIL+TY
Sbjct:   435 EMILIAGEVDKNLR----DVNCYSQMIEDAEGLEKIENLQHHGNNEIYEKAVKILQTY 488

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2078122 IMPA-7 "importin alpha isoform 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 1209 (430.6 bits), Expect = 5.7e-123, P = 5.7e-123
 Identities = 251/426 (58%), Positives = 314/426 (73%)

Query:     1 MVAGVWSDDNNMQLEATTHIRKLLSNAR-SAPTEEVIPFGVVPRFVEFLMREDYPQLQFE 59
             +++ +WSD+ ++ +EATT IR LL     +   EEVI  G+VPRFVEFL  +D PQLQFE
Sbjct:    64 LISCIWSDERDLLIEATTQIRTLLCGEMFNVRVEEVIQAGLVPRFVEFLTWDDSPQLQFE 123

Query:    60 AAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDL 119
             AAWAL NI SGTSE+T+VVIDHGAV I V+LL SP D +REQ V ALGN++ DS RCRD+
Sbjct:   124 AAWALTNIASGTSENTEVVIDHGAVAILVRLLNSPYDVVREQVVWALGNISGDSPRCRDI 183

Query:   120 VLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSND 179
             VL   AL  LL QLN  AKLSML  A WTLSN C GKP+P FDQV  ALPALAQL+  +D
Sbjct:   184 VLGHAALPSLLLQLNHGAKLSMLVNAAWTLSNLCRGKPQPPFDQVSAALPALAQLIRLDD 243

Query:   180 KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGD 239
             KE++   C AL YLS+G+N++IQAVIEA VC RL+ L  H SPSV+T AL+T+ NI  G+
Sbjct:   244 KELLAYTCWALVYLSDGSNEKIQAVIEANVCARLIGLSIHRSPSVITPALRTIGNIVTGN 303

Query:   240 DFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLV 299
             D QTQ II+  ALP L+ LL  ++ K+I+ +ACWT+SNITAG    IQAV DA +   LV
Sbjct:   304 DSQTQHIIDLQALPCLVNLLRGSYNKTIRKEACWTVSNITAGCQSQIQAVFDADICPALV 363

Query:   300 NLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKG 359
             NLLQN+E D+K  AA AI NA  GG+++QI +LV++ CIKPLCDLL C+D ++V V L+ 
Sbjct:   364 NLLQNSEGDVKKEAAWAICNAIAGGSYKQIMFLVKQECIKPLCDLLTCSDTQLVMVCLEA 423

Query:   360 LEKILKVGE------AEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVK 413
             L+KILKVGE      AE        +VN +AQL+EEAEGLEKIE L+SH+N++I+E +VK
Sbjct:   424 LKKILKVGEVFSSRHAEGIYQCPQTNVNPHAQLIEEAEGLEKIEGLQSHENNDIYETAVK 483

Query:   414 ILETYW 419
             ILETYW
Sbjct:   484 ILETYW 489

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

ASPGD|ASPL0000045550 kapA [Emericella nidulans (taxid:162425)]

 Score = 1184 (421.8 bits), Expect = 2.5e-120, P = 2.5e-120
 Identities = 248/422 (58%), Positives = 308/422 (72%)

Query:     1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
             MV GV+SD    Q++ATT  RKLLS  R+ P E VI  GVV RFVEFL R  +  +QFEA
Sbjct:    87 MVKGVFSDQIEAQIQATTKFRKLLSKERNPPIERVIETGVVSRFVEFL-RSPHTLVQFEA 145

Query:    61 AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
             AWAL NI SG+++ T+VVI+ GAVPIFV+LL+SP  D+REQAV ALGN+A DS +CRD V
Sbjct:   146 AWALTNIASGSAQQTQVVIEAGAVPIFVELLSSPEPDVREQAVWALGNIAGDSPQCRDFV 205

Query:   121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLVHSND 179
             L+  AL PLLT +N   K+SMLR ATWTLSNFC GK P+P ++ + PALP LA+L++  D
Sbjct:   206 LNAGALRPLLTLINDGRKISMLRNATWTLSNFCRGKTPQPDWNTIAPALPVLAKLIYMLD 265

Query:   180 KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGD 239
              EV+ DAC A+ YLS+G N++IQAVIEAG+  RLVELL H S SV T AL++V NI  GD
Sbjct:   266 DEVLIDACWAISYLSDGPNEKIQAVIEAGIPRRLVELLMHASTSVQTPALRSVGNIVTGD 325

Query:   240 DFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLV 299
             D QTQ IINCGALP LL LL  + K  I+ +ACWTISNITAGNS  IQ+VIDAG+I PLV
Sbjct:   326 DVQTQVIINCGALPALLSLL-SSTKDGIRKEACWTISNITAGNSSQIQSVIDAGIIPPLV 384

Query:   300 NLLQNAEFDIKNWAARAISNATFGGTH--EQIKYLVREGCIKPLCDLLLCADPEIVTVFL 357
             +LL N +F  +  A  AISNAT GG    +QI+YLV +GCIKPLCDLL C D +I+ V L
Sbjct:   385 HLLANGDFKTRKEACWAISNATSGGLQKPDQIRYLVTQGCIKPLCDLLACPDNKIIQVAL 444

Query:   358 KGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILET 417
              GLE ILKVGE +K        VN+YA  +EEA G+EKI + +++ N+EI+ K+  I+E 
Sbjct:   445 DGLENILKVGEMDKEAGQGDAHVNRYALFIEEAGGMEKIHDCQNNANEEIYMKAYNIIEK 504

Query:   418 YW 419
             Y+
Sbjct:   505 YF 506

GO:0006606 "protein import into nucleus" evidence=IMP

GO:0005635 "nuclear envelope" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0033554 "cellular response to stress" evidence=IEA

GO:0000087 "M phase of mitotic cell cycle" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

UNIPROTKB|G4MZS0 MGG_15072 "Importin subunit alpha" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 1156 (412.0 bits), Expect = 2.3e-117, P = 2.3e-117
 Identities = 247/423 (58%), Positives = 304/423 (71%)

Query:     1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
             MV GV+S+  + Q++ATT  RKLLS  R+ P EEVI  GVV RFVEFL R  +  +QFEA
Sbjct:    86 MVQGVFSESIDAQIQATTKFRKLLSKERNPPIEEVIKTGVVSRFVEFL-RSPHTLVQFEA 144

Query:    61 AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
             AWAL NI SG++  T+VVI+ GAVPIFV+LL SP  D+REQAV ALGN+A DS +CRD V
Sbjct:   145 AWALTNIASGSATQTQVVIEAGAVPIFVELLGSPEPDVREQAVWALGNIAGDSPQCRDYV 204

Query:   121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLVHSND 179
             LS  AL PLL  L    KLSMLR ATWTLSNFC GK P+P +  + PALP LA+LV+S D
Sbjct:   205 LSCGALKPLLNLLGDSRKLSMLRNATWTLSNFCRGKTPQPDWTTIAPALPVLAKLVYSLD 264

Query:   180 KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGD 239
              EV+ DAC A+ YLS+G+ND+IQAVIEAG+  RLVELL H S SV T AL++V NI  GD
Sbjct:   265 DEVLIDACWAISYLSDGSNDKIQAVIEAGIPRRLVELLMHASTSVQTPALRSVGNIVTGD 324

Query:   240 DFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLV 299
             D QTQ IINCGALP LL LL  N K  I+ +ACWTISNITAGNS  IQ+V+DA +I PL+
Sbjct:   325 DVQTQVIINCGALPCLLSLLGSN-KDGIRKEACWTISNITAGNSAQIQSVVDANIIPPLI 383

Query:   300 NLLQNAEFDIKNWAARAISNATFGGTH--EQIKYLVREGCIKPLCDLLLCADPEIVTVFL 357
             +LL N +   +  A  AISNAT GG    +QI+YLV +GCIKPLCDLL C D +I+ V L
Sbjct:   384 HLLSNGDLKTRKEACWAISNATSGGLQKPDQIRYLVAQGCIKPLCDLLSCPDNKIIQVAL 443

Query:   358 KGLEKILKVGEAEKNMDIAIGD-VNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILE 416
              GLE ILKVG+ +K       D +N+YA  +EE  G+EKI   +++ N+EI+ K+  I+E
Sbjct:   444 DGLENILKVGDLDKQAAGEGQDSINRYALFIEECGGMEKIHECQTNANEEIYMKAFNIIE 503

Query:   417 TYW 419
              Y+
Sbjct:   504 KYF 506

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0272318 DDB_G0272318 "putative importin subunit alpha B" [Dictyostelium discoideum (taxid:44689)]

 Score = 1132 (403.5 bits), Expect = 8.2e-115, P = 8.2e-115
 Identities = 233/420 (55%), Positives = 308/420 (73%)

Query:     1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
             +VA + S++ ++ L++TT  RKLLS  +S P EEVI  G+VPR V+FL  +D+PQLQFEA
Sbjct:    72 LVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKFLYMQDFPQLQFEA 131

Query:    61 AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
             AWAL NI SGT E T+VVI++GA+ +FV LL+SP DD+REQAV ALGN+A DS  CRDLV
Sbjct:   132 AWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALGNIAGDSHYCRDLV 191

Query:   121 LSEEALIPLLTQLNKHA--KLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSN 178
             LS  AL PLL+ L   A  K+SM+R ATWTLSNFC GKP+P F+ VR +LP LA+L++  
Sbjct:   192 LSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVRASLPVLAKLIYYQ 251

Query:   179 DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG 238
             D+EV+ DAC AL YLS+G+N+ IQ VI+A VC ++VELLGHP+ +V T AL+T+ NI  G
Sbjct:   252 DEEVLIDACWALSYLSDGSNERIQEVIDAKVCRKMVELLGHPTIAVQTPALRTIGNIVTG 311

Query:   239 DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPL 298
             DD QTQ +++  AL +LL LL  + K++I+ +ACWTISNITAG+   IQ VIDA +I  L
Sbjct:   312 DDNQTQIVLSVQALSHLLNLL-QSPKRAIRKEACWTISNITAGDKNQIQQVIDANIIPSL 370

Query:   299 VNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLK 358
             V LL NAEF+I+  AA AISNAT  GT +QI +LV +GC+KPLCDLL  +DP I+ V L+
Sbjct:   371 VYLLANAEFEIQKEAAWAISNATSCGTPQQIHFLVSQGCVKPLCDLLKVSDPRIINVALE 430

Query:   359 GLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETY 418
             G+E IL  G+ E      +  VN Y +++E+A+GL KI +L+ H N +  EK  +I+ TY
Sbjct:   431 GIENILVAGKKEAQ----VTGVNPYKKIIEDADGLGKIYDLQHHMNKDTFEKVSRIISTY 486

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O35345	IMA7_MOUSE	No assigned EC number	0.5629	0.9306	0.7761	yes	no
Q19969	IMA3_CAEEL	No assigned EC number	0.4136	0.9418	0.8190	yes	no
Q5RBV0	IMA7_PONAB	No assigned EC number	0.5605	0.9306	0.7761	yes	no
Q02821	IMA1_YEAST	No assigned EC number	0.5353	0.9239	0.7619	yes	no
Q96321	IMA1_ARATH	No assigned EC number	0.7446	0.9351	0.7857	yes	no
O94374	IMA2_SCHPO	No assigned EC number	0.5177	0.9284	0.7699	yes	no
Q76P29	IMAB_DICDI	No assigned EC number	0.5547	0.9239	0.8003	yes	no
O22478	IMA_SOLLC	No assigned EC number	0.6832	0.9865	0.8368	N/A	no
O60684	IMA7_HUMAN	No assigned EC number	0.5605	0.9306	0.7761	yes	no
Q0V7M0	IMA7_BOVIN	No assigned EC number	0.5629	0.9306	0.7761	yes	no
Q71VM4	IMA1A_ORYSJ	No assigned EC number	0.7256	0.9619	0.8174	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	447
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	1e-160
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-28
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-25
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	3e-23
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	8e-19
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-17
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	4e-17
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	3e-14
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	2e-08
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-08
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	9e-07
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	3e-06
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	5e-06
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	6e-06
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	3e-05
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	8e-05
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	9e-05
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	4e-04
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	5e-04
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	0.002
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	0.002

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score =  462 bits (1191), Expect = e-160
 Identities = 224/423 (52%), Positives = 287/423 (67%), Gaps = 7/423 (1%)

Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
           +   ++SDD   QL+A    RKLLS   S P + VI  GVVPRFVEF+       LQFEA
Sbjct: 76  LTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEA 135

Query: 61  AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
           AWAL NI SGT++ TKVV+D GAVP+F++LL+S  DD+REQAV ALGN+A DS  CRD V
Sbjct: 136 AWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYV 195

Query: 121 LSEEALIPLLTQLNKHA-KLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLVHSN 178
           L   AL PLL  L   A  +SMLR ATWTLSN C GK P P +  +  ALP LA+L++S 
Sbjct: 196 LQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSR 255

Query: 179 DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG 238
           D EV+ DAC A+ YLS+G N++IQAV++ G+  RLVELL H S  + T AL++V NI  G
Sbjct: 256 DPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTG 315

Query: 239 DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPL 298
            D QTQ IINCGAL     LL  + K++I+ +ACWTISNITAGN+E IQAVIDA LI PL
Sbjct: 316 SDDQTQVIINCGALKAFRSLL-SSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPL 374

Query: 299 VNLLQNAEFDIKNWAARAISNATFGGTH--EQIKYLVREGCIKPLCDLLLCADPEIVTVF 356
           ++LL +AE+ IK  A  AISNAT GG +  + I+YLV +G IKPLCDLL   D +I+ V 
Sbjct: 375 IHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVA 434

Query: 357 LKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILE 416
           L  +E ILKVGE ++       ++N YA  VE+A G++ I  L+   N  I++K+  I+E
Sbjct: 435 LDAIENILKVGEQDRLRYGK--NINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIE 492

Query: 417 TYW 419
            ++
Sbjct: 493 KFF 495

Length = 526

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score =  108 bits (272), Expect = 2e-28
 Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 2/122 (1%)

Query: 33  EEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLA 92
           E VI  G +P  V  L   D   +Q EAAWAL N+ +G +++ + V++ G +P  V+LL 
Sbjct: 1   EAVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK 59

Query: 93  SPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNF 152
           S  +++ + A+ AL N+AA     + +VL     +P L  L   +   + + AT  LSN 
Sbjct: 60  SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGG-VPKLVNLLDSSNEDIQKNATGALSNL 118

Query: 153 CA 154
            +
Sbjct: 119 AS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score =  100 bits (251), Expect = 1e-25
 Identities = 44/114 (38%), Positives = 65/114 (57%), Gaps = 1/114 (0%)

Query: 167 ALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLT 226
            LPAL  L+ S+D+ V  +A  AL  LS G ND IQAV+EAG  P LV+LL      V+ 
Sbjct: 8   GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVK 67

Query: 227 RALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA 280
            AL  + N+AAG +     ++  G +P L+ LL  +  + I+ +A   +SN+ +
Sbjct: 68  AALWALRNLAAGPEDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 93.9 bits (234), Expect = 3e-23
 Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 1/118 (0%)

Query: 202 QAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIH 261
           +AVI+AG  P LV LL     +V   A   + N++AG++   Q ++  G LP L+ LL  
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60

Query: 262 NHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISN 319
             ++ +   A W + N+ AG  ++   V++AG +  LVNLL ++  DI+  A  A+SN
Sbjct: 61  EDEE-VVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSN 117

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 81.6 bits (202), Expect = 8e-19
 Identities = 34/116 (29%), Positives = 65/116 (56%), Gaps = 2/116 (1%)

Query: 246 IINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNA 305
           +I  G LP L+ LL  + + +++ +A W +SN++AGN+++IQAV++AG +  LV LL++ 
Sbjct: 3   VIQAGGLPALVSLLSSSDE-NVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 306 EFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLE 361
           + ++   A  A+ N   G   +    ++  G +  L +LL  ++ +I       L 
Sbjct: 62  DEEVVKAALWALRNLAAGPE-DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALS 116

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 78.5 bits (194), Expect = 1e-17
 Identities = 35/105 (33%), Positives = 59/105 (56%), Gaps = 2/105 (1%)

Query: 7   SDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKN 66
           S D N+Q EA   +  L +   +   + V+  G +P  V+ L  ED  ++   A WAL+N
Sbjct: 18  SSDENVQREAAWALSNLSAGN-NDNIQAVVEAGGLPALVQLLKSED-EEVVKAALWALRN 75

Query: 67  IVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAA 111
           + +G  ++  +V++ G VP  V LL S ++DI++ A  AL N+A+
Sbjct: 76  LAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 77.0 bits (190), Expect = 4e-17
 Identities = 42/114 (36%), Positives = 57/114 (50%), Gaps = 3/114 (2%)

Query: 126 LIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPA--LPALAQLVHSNDKEVM 183
            +P L  L   +  ++ R A W LSN  AG    I   V  A  LPAL QL+ S D+EV+
Sbjct: 8   GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNI-QAVVEAGGLPALVQLLKSEDEEVV 66

Query: 184 TDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAA 237
             A  AL  L+ G  D    V+EAG  P+LV LL   +  +   A   + N+A+
Sbjct: 67  KAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 68.9 bits (169), Expect = 3e-14
 Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 14/133 (10%)

Query: 287 QAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLL 346
           +AVI AG +  LV+LL +++ +++  AA A+SN + G  ++ I+ +V  G +  L  LL 
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAG-NNDNIQAVVEAGGLPALVQLLK 59

Query: 347 CADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDE 406
             D E+V   L  L  +    E  K              +V EA G+ K+ NL    N++
Sbjct: 60  SEDEEVVKAALWALRNLAAGPEDNK-------------LIVLEAGGVPKLVNLLDSSNED 106

Query: 407 IHEKSVKILETYW 419
           I + +   L    
Sbjct: 107 IQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 49.7 bits (120), Expect = 2e-08
 Identities = 13/41 (31%), Positives = 26/41 (63%)

Query: 71  TSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAA 111
             E+ + V+D G +P  V+LL S  +++ ++A  AL N+++
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 49.4 bits (119), Expect = 2e-08
 Identities = 19/41 (46%), Positives = 31/41 (75%)

Query: 71  TSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAA 111
           + E+ + VI+ GAVP  V+LL+SP ++++E+A  AL N+AA
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 45.1 bits (108), Expect = 9e-07
 Identities = 18/41 (43%), Positives = 23/41 (56%)

Query: 197 TNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAA 237
           + +  QAVIEAG  P LV+LL  P   V   A   + N+AA
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 43.6 bits (104), Expect = 3e-06
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 242 QTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA 280
             Q +I  GA+P L+ LL  +  + ++ +A W +SN+ A
Sbjct: 4   NKQAVIEAGAVPPLVQLL-SSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 43.2 bits (102), Expect = 5e-06
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 54  PQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNV 109
            +++  AA AL  +  G  E  +  +    +P  + LL    D++RE A  ALG +
Sbjct: 1   WEVREAAALALGALAGGGPELLRPAVPE-LLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 42.8 bits (102), Expect = 6e-06
 Identities = 17/38 (44%), Positives = 27/38 (71%)

Query: 282 NSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISN 319
           + E+ QAVI+AG + PLV LL + + +++  AA A+SN
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSN 38

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 40.5 bits (96), Expect = 3e-05
 Identities = 14/37 (37%), Positives = 21/37 (56%)

Query: 201 IQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAA 237
            QAV++AG  P LVELL      V+  A   + N+++
Sbjct: 5   KQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 39.3 bits (93), Expect = 8e-05
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 282 NSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATF 322
           + E+ QAV+DAG +  LV LL++ + ++   AA A+SN + 
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 39.3 bits (93), Expect = 9e-05
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 239 DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA 280
           DD   Q +++ G LP L+ LL    ++ +  +A W +SN+++
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEE-VVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 37.4 bits (88), Expect = 4e-04
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 28 RSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVS 69
               + V+  G +P  VE L  ED  ++  EAAWAL N+ S
Sbjct: 1  DDENKQAVVDAGGLPALVELLKSED-EEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 37.0 bits (87), Expect = 5e-04
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 29 SAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVS 69
              + VI  G VP  V+ L   D  ++Q EAAWAL N+ +
Sbjct: 2  PENKQAVIEAGAVPPLVQLLSSPD-EEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 11/74 (14%)

Query: 41  VPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIRE 100
           +   +E L+ +  P+++  AA AL  +            D  A+P  ++LL  P  ++R 
Sbjct: 1   LEALLEALLSDPDPEVRAAAARALGEL-----------GDPEALPALLELLKDPDPEVRR 49

Query: 101 QAVCALGNVAADSA 114
            A  ALG +    A
Sbjct: 50  AAAEALGKLGDPEA 63

This family includes multiple HEAT repeats. Length = 88

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 62/249 (24%), Positives = 100/249 (40%), Gaps = 18/249 (7%)

Query: 64  LKNIVSGTSEDTKVVIDHG-AVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLS 122
           L  +     E  K +  H  A+P+ V LL S +   +  A   LG        C++  L 
Sbjct: 39  LLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLG------VLCKEEDLR 92

Query: 123 EEAL----IPLLTQLNKHAKLSMLRIATWTLSNFCAGKPK-----PIF--DQVRPALPAL 171
            + L    IP L  L K       + A   +    +G         IF  + V P+L   
Sbjct: 93  VKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQ 152

Query: 172 AQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQT 231
            Q  +  DK V      AL  L   T+    A +EAG    LV+LL   +      A   
Sbjct: 153 LQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASL 212

Query: 232 VVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVID 291
           +  +    +     +++ GA+  LL LL   ++ S++ +A   +  +++ + E  QA+ D
Sbjct: 213 LARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIAD 272

Query: 292 AGLIGPLVN 300
           AG I  L+N
Sbjct: 273 AGGIPALIN 281

Length = 2102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	447
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	100.0
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.96
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.95
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.88
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.84
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.84
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.82
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.81
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.81
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.8
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.79
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.75
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.75
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.72
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.72
PRK09687	280	putative lyase; Provisional	99.71
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.7
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.69
PRK09687	280	putative lyase; Provisional	99.67
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.65
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.64
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.63
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.63
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.63
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.6
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.6
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.6
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.55
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.53
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.53
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.53
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.51
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.5
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.48
PTZ00429	746	beta-adaptin; Provisional	99.45
PTZ00429	746	beta-adaptin; Provisional	99.41
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.41
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.38
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.33
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.26
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.25
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.25
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.24
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.2
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	99.16
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	99.16
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.14
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.11
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.1
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	99.08
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	99.08
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	99.05
KOG0212	675	consensus Uncharacterized conserved protein [Funct	99.02
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.97
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.92
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.89
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.88
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.88
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.88
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	98.86
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.86
COG5369	743	Uncharacterized conserved protein [Function unknow	98.85
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.81
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.81
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.8
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.79
COG5369	743	Uncharacterized conserved protein [Function unknow	98.75
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.75
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.73
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	98.72
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.7
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.7
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.7
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.69
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.68
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.68
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.68
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.66
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.65
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.59
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.58
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.57
PF05536	543	Neurochondrin: Neurochondrin	98.55
TIGR02270	410	conserved hypothetical protein. Members are found	98.54
TIGR02270	410	conserved hypothetical protein. Members are found	98.5
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	98.48
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	98.46
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.46
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	98.45
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.42
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.4
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.39
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.34
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.33
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.32
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.31
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	98.3
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.3
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.3
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	98.28
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.28
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	98.27
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.25
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.25
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	98.2
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	98.19
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.18
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.18
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	98.12
PF05536	543	Neurochondrin: Neurochondrin	98.12
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	98.07
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.07
KOG2734	536	consensus Uncharacterized conserved protein [Funct	98.06
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	98.06
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	98.02
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	98.0
KOG2734	536	consensus Uncharacterized conserved protein [Funct	98.0
KOG2062	929	consensus 26S proteasome regulatory complex, subun	97.99
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.98
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.96
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	97.94
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.87
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	97.87
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	97.85
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.82
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.82
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.81
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.73
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	97.67
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.66
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	97.65
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.65
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	97.65
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	97.64
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.63
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.62
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.62
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	97.6
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.57
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.53
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.52
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.52
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.5
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.47
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.47
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.46
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.44
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.35
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	97.32
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	97.31
KOG0414	1251	consensus Chromosome condensation complex Condensi	97.29
KOG3036	293	consensus Protein involved in cell differentiation	97.27
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	97.2
KOG2025	892	consensus Chromosome condensation complex Condensi	97.19
KOG0567	289	consensus HEAT repeat-containing protein [General	97.19
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.18
PF05004	309	IFRD: Interferon-related developmental regulator (	97.15
KOG4653	982	consensus Uncharacterized conserved protein [Funct	97.15
PRK14707	2710	hypothetical protein; Provisional	97.14
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	97.11
COG5116	926	RPN2 26S proteasome regulatory complex component [	97.1
KOG2032	533	consensus Uncharacterized conserved protein [Funct	97.09
PRK14707	2710	hypothetical protein; Provisional	97.06
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	97.06
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	97.05
PF05004	309	IFRD: Interferon-related developmental regulator (	96.99
KOG2032	533	consensus Uncharacterized conserved protein [Funct	96.96
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	96.95
KOG2956	516	consensus CLIP-associating protein [General functi	96.95
KOG2062	929	consensus 26S proteasome regulatory complex, subun	96.95
KOG4653	982	consensus Uncharacterized conserved protein [Funct	96.9
KOG3036	293	consensus Protein involved in cell differentiation	96.88
KOG0567	289	consensus HEAT repeat-containing protein [General	96.84
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.79
KOG0414	1251	consensus Chromosome condensation complex Condensi	96.79
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.78
COG5656	970	SXM1 Importin, protein involved in nuclear import	96.77
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	96.67
KOG1243	690	consensus Protein kinase [General function predict	96.62
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	96.6
PF08045	257	CDC14: Cell division control protein 14, SIN compo	96.59
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	96.49
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	96.44
KOG2956	516	consensus CLIP-associating protein [General functi	96.39
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	96.38
PF08045	257	CDC14: Cell division control protein 14, SIN compo	96.33
KOG1243	690	consensus Protein kinase [General function predict	96.32
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	96.3
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.29
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.27
PF07814	361	WAPL: Wings apart-like protein regulation of heter	96.24
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.11
PF07814	361	WAPL: Wings apart-like protein regulation of heter	96.07
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.06
COG5098	1128	Chromosome condensation complex Condensin, subunit	96.02
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	95.91
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.91
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	95.89
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	95.75
KOG0413	1529	consensus Uncharacterized conserved protein relate	95.68
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	95.65
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	95.62
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	95.51
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	95.39
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	95.38
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	95.36
COG5116	926	RPN2 26S proteasome regulatory complex component [	95.33
COG5098	1128	Chromosome condensation complex Condensin, subunit	95.33
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	95.22
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	95.15
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	95.15
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	95.1
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	95.06
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	95.03
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	94.99
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	94.94
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	94.89
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	94.87
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	94.86
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	94.78
KOG0413	1529	consensus Uncharacterized conserved protein relate	94.7
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	94.68
KOG2933	334	consensus Uncharacterized conserved protein [Funct	94.6
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	94.49
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	94.27
KOG2025	892	consensus Chromosome condensation complex Condensi	94.26
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	94.2
KOG2137	700	consensus Protein kinase [Signal transduction mech	94.18
KOG2933	334	consensus Uncharacterized conserved protein [Funct	94.06
COG5656	970	SXM1 Importin, protein involved in nuclear import	94.03
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	94.0
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	93.89
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	93.88
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	93.86
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	93.78
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	93.69
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	93.57
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	93.54
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	93.5
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	93.48
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	93.34
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	93.16
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	93.14
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	92.92
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	92.91
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	92.86
KOG2229	616	consensus Protein required for actin cytoskeleton	92.84
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	92.81
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	92.63
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	92.6
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	92.57
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	92.43
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	91.93
KOG2137	700	consensus Protein kinase [Signal transduction mech	91.78
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	91.71
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	91.28
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	91.19
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	91.02
cd03561	133	VHS VHS domain family; The VHS domain is present i	90.95
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	90.79
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	90.75
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	90.71
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	90.6
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	90.36
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	90.28
KOG1988	970	consensus Uncharacterized conserved protein [Funct	90.15
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	89.69
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	89.65
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	89.45
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	89.12
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	89.09
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	88.96
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	88.73
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	88.59
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	88.55
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	88.44
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	88.24
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	87.84
cd03561	133	VHS VHS domain family; The VHS domain is present i	87.79
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	87.76
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	87.33
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	87.31
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	87.28
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	87.24
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	86.92
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	86.4
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	86.16
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	86.12
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	86.0
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	85.92
KOG0889	3550	consensus Histone acetyltransferase SAGA, TRRAP/TR	85.61
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	84.51
PF06685	249	DUF1186: Protein of unknown function (DUF1186); In	84.4
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	84.2
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	83.95
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	83.75
COG5110	881	RPN1 26S proteasome regulatory complex component [	83.5
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	83.42
KOG0392	1549	consensus SNF2 family DNA-dependent ATPase domain-	82.96
cd00197	115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	82.87
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	82.87
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	82.74
PF04388	668	Hamartin: Hamartin protein; InterPro: IPR007483 Th	82.33
PF06685	249	DUF1186: Protein of unknown function (DUF1186); In	81.93
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	81.79
PF04821	266	TIMELESS: Timeless protein; InterPro: IPR006906 Th	81.38
PF12726	727	SEN1_N: SEN1 N terminal; InterPro: IPR024481 The y	80.69
KOG0301	745	consensus Phospholipase A2-activating protein (con	80.51
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	80.4
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	80.16

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.1e-64  Score=449.13  Aligned_cols=440  Identities=61%  Similarity=0.900  Sum_probs=411.1

Q ss_pred             cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228            2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH   81 (447)
Q Consensus         2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (447)
                      +..+.|+++..+..+...++++.+....++...++..|++|.++++|...+++.++..|+|+|.|+++++.+....++++
T Consensus        72 ~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~a  151 (514)
T KOG0166|consen   72 LAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDA  151 (514)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccC
Confidence            45678999999999999999999998788899999999999999999877669999999999999999999999999999


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCC-CCCC
Q 013228           82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK-PKPI  160 (447)
Q Consensus        82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~  160 (447)
                      |+++.++.++.+++..++++|+|+|+|++.+++.+|+.+...|++++|+.++..+....+.+++.|+|+|+|++. |.+.
T Consensus       152 gavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~  231 (514)
T KOG0166|consen  152 GAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPP  231 (514)
T ss_pred             CchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCc
Confidence            999999999999999999999999999999999999999999999999999966555689999999999999998 8888


Q ss_pred             hhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCCh
Q 013228          161 FDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD  240 (447)
Q Consensus       161 ~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~  240 (447)
                      ...+..++|.|..++.+.|+++...++|++++++.++.+.++.+++.|+++.|+.+|.+.+..++..|+++++|++.+++
T Consensus       232 ~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d  311 (514)
T KOG0166|consen  232 FDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSD  311 (514)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccH
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHh
Q 013228          241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNA  320 (447)
Q Consensus       241 ~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l  320 (447)
                      .+++.+++.|+++.|..++...+...+|++|||+++|++.++.++++.+++.|++|.|++++++.+.++|++|+|+++|+
T Consensus       312 ~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~  391 (514)
T KOG0166|consen  312 EQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNL  391 (514)
T ss_pred             HHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhh
Confidence            99999999999999999999553777999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHh
Q 013228          321 TFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLR  400 (447)
Q Consensus       321 ~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~  400 (447)
                      +..+++++..+|++.|++++++.+|.-.|.++...++.++.++++.++......    . ++++..+++.||++.++.|+
T Consensus       392 ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~----~-n~~~~~IEe~ggldkiE~LQ  466 (514)
T KOG0166|consen  392 TSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRG----T-NPLAIMIEEAGGLDKIENLQ  466 (514)
T ss_pred             cccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhcccc----c-cHHHHHHHHccChhHHHHhh
Confidence            999999999999999999999999999999999999999999999999876431    1 78999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHhcCCCCCCCCCCCC-CCcccCCCCCCCCcc
Q 013228          401 SHDNDEIHEKSVKILETYWCGRVAGPQPGNE-GEDALGSNVITDGKV  446 (447)
Q Consensus       401 ~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  446 (447)
                      +|.+++++++|..++++||..+++++..+-+ ..|.++++.++.||-
T Consensus       467 ~hen~~Iy~~A~~II~~yf~~e~~~~~~~~~~~~~~~~~~~~~~~f~  513 (514)
T KOG0166|consen  467 SHENEEIYKKAYKIIDTYFSEEDDEDDQQPTTSQFTFQVQAPDGGFN  513 (514)
T ss_pred             ccccHHHHHHHHHHHHHhcCCCcccccccccccccccCCCCCCCCCC
Confidence            9999999999999999999998766644322 678888885555553

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=6.1e-62  Score=405.54  Aligned_cols=439  Identities=52%  Similarity=0.781  Sum_probs=409.0

Q ss_pred             cccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCC
Q 013228            4 GVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGA   83 (447)
Q Consensus         4 ~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~   83 (447)
                      -|.|+|-+.+..|..-++++++.+..++++.+++.|++|.++++|.+....-.+.+|+|+|.|+++++......++++|+
T Consensus        79 ~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~A  158 (526)
T COG5064          79 QLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGA  158 (526)
T ss_pred             HHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCc
Confidence            46789999999999999999999989999999999999999999955443688999999999999999999999999999


Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcccc-chhHHHHHHHHHHHhcCCC-CCCCh
Q 013228           84 VPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHA-KLSMLRIATWTLSNFCAGK-PKPIF  161 (447)
Q Consensus        84 i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~-~~~~~~~a~~~L~~l~~~~-~~~~~  161 (447)
                      +|.++++|.+++.+++++++|+|+|++.+++.+|+.+++.|++.+++.++..+. +..+.+++.|.|+|||+.. |.+..
T Consensus       159 VPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w  238 (526)
T COG5064         159 VPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDW  238 (526)
T ss_pred             hHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCch
Confidence            999999999999999999999999999999999999999999999999995433 4689999999999999998 78888


Q ss_pred             hhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChh
Q 013228          162 DQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDF  241 (447)
Q Consensus       162 ~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~  241 (447)
                      ..+...+|.|.+++.+.|+++...|+|+++.++..+.+..+.+++.|+.+.|+.+|.+++..++..+++.++|+..+++.
T Consensus       239 ~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~  318 (526)
T COG5064         239 SNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDD  318 (526)
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCcc
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhc
Q 013228          242 QTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNAT  321 (447)
Q Consensus       242 ~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~  321 (447)
                      +.+.+++.|+++.+..+|.++ ...+|+++||+++|+..++.++++.+++.+++|.|+.+|.+.+..++++|||++.|..
T Consensus       319 QTqviI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNat  397 (526)
T COG5064         319 QTQVIINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNAT  397 (526)
T ss_pred             ceehheecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999999 8899999999999999999999999999999999999999999999999999999998


Q ss_pred             CCC--CHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHH
Q 013228          322 FGG--THEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENL  399 (447)
Q Consensus       322 ~~~--~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l  399 (447)
                      ..+  .|+..+++.++|++++|+.+|.-.+..+.+.++.++.++++.++..+....  -+.|.|...+++.||++.+..+
T Consensus       398 sgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~--~nin~ya~~vE~Aggmd~I~~~  475 (526)
T COG5064         398 SGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYG--KNINIYAVYVEKAGGMDAIHGL  475 (526)
T ss_pred             ccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhcc--CCccHHHHHHHhcccHHHHHHh
Confidence            865  578899999999999999999999999999999999999999987765433  3566789999999999999999


Q ss_pred             hcCCCHHHHHHHHHHHHHhcCCCC--CCCCCCCC-CCcccCCCCCCCCc
Q 013228          400 RSHDNDEIHEKSVKILETYWCGRV--AGPQPGNE-GEDALGSNVITDGK  445 (447)
Q Consensus       400 ~~~~~~~v~~~a~~~l~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~  445 (447)
                      +++.+.+++.+|-.++++||.+++  ++=+|++. +-|-|++.+.+-|.
T Consensus       476 Q~s~n~~iy~KAYsIIe~fFgeeD~vd~lapet~g~tftfg~~~~~qg~  524 (526)
T COG5064         476 QDSVNRTIYDKAYSIIEKFFGEEDAVDELAPETAGNTFTFGSNVNQQGN  524 (526)
T ss_pred             hhccccHHHHHHHHHHHHHcccchhhhhcCccccCCeeecCCCccccCC
Confidence            999999999999999999997766  33399999 99999999988774

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.5e-45  Score=331.79  Aligned_cols=362  Identities=26%  Similarity=0.396  Sum_probs=324.2

Q ss_pred             ccccc-CCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228            2 VAGVW-SDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID   80 (447)
Q Consensus         2 v~~l~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (447)
                      |.+|. ++++.++++|+|+|.+++++. +++.+.+++.|++|.+++++.+++ .+++++|+|+|+|++.+++.+|+.+++
T Consensus       115 V~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~-~~v~eQavWALgNIagds~~~Rd~vl~  192 (514)
T KOG0166|consen  115 VEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPS-ADVREQAVWALGNIAGDSPDCRDYVLS  192 (514)
T ss_pred             HHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCc-HHHHHHHHHHHhccccCChHHHHHHHh
Confidence            55665 456999999999999999997 888899999999999999999999 899999999999999999999999999


Q ss_pred             CCChHHHHHhhCCCCH-HHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCC
Q 013228           81 HGAVPIFVKLLASPSD-DIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKP  159 (447)
Q Consensus        81 ~~~i~~L~~ll~~~~~-~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~  159 (447)
                      .|++++|+.++..++. .+.++++|+|+|||++..+....-.-..+++.|..++ .+.|+++...++|++++|+.+.+..
T Consensus       193 ~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyLsdg~ne~  271 (514)
T KOG0166|consen  193 CGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLL-HSTDEEVLTDACWALSYLTDGSNEK  271 (514)
T ss_pred             hcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHhcCChHH
Confidence            9999999999988665 7889999999999976522222222334688888888 8999999999999999999887443


Q ss_pred             -ChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcC-CCCchhHhHHHHHHHHhhc
Q 013228          160 -IFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLG-HPSPSVLTRALQTVVNIAA  237 (447)
Q Consensus       160 -~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~v~~~a~~~l~~l~~  237 (447)
                       ......+++|.|+.+|.+..+.++..|+++++|++.+++.+.+.+++.|+++.|..++. ++...+++.|+|+++|++.
T Consensus       272 iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA  351 (514)
T KOG0166|consen  272 IQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA  351 (514)
T ss_pred             HHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc
Confidence             33445899999999999999999999999999999999999999999999999999998 5677799999999999999


Q ss_pred             CChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHH
Q 013228          238 GDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA-GNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARA  316 (447)
Q Consensus       238 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~a  316 (447)
                      ++..+.+.+++.|++|.|+.+|.+. +.++|++|+|+++|++. ++++++.++++.|+++.++.+|...|.++...+..+
T Consensus       352 G~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~  430 (514)
T KOG0166|consen  352 GNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDG  430 (514)
T ss_pred             CCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHH
Confidence            9999999999999999999999999 89999999999999998 688999999999999999999998999999999999


Q ss_pred             HHHhcCCCC-------HHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 013228          317 ISNATFGGT-------HEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVG  367 (447)
Q Consensus       317 L~~l~~~~~-------~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~  367 (447)
                      |.++...+.       ......+.+.|+++.+..+-.+++.++...|..++.+.+..+
T Consensus       431 l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e  488 (514)
T KOG0166|consen  431 LENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEE  488 (514)
T ss_pred             HHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCC
Confidence            999987442       233456677899999999999999999999999999998765

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=4.8e-45  Score=304.64  Aligned_cols=360  Identities=26%  Similarity=0.349  Sum_probs=315.7

Q ss_pred             cccc-cCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228            2 VAGV-WSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID   80 (447)
Q Consensus         2 v~~l-~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (447)
                      |+++ .++....+++|+|+|.+++++. ..+.+.+++.|++|.++++|.+++ .+|+++++|+|+|++.+++.+|+.+.+
T Consensus       120 vefm~~~q~~mlqfEAaWalTNiaSGt-t~QTkvVvd~~AVPlfiqlL~s~~-~~V~eQavWALGNiAGDS~~~RD~vL~  197 (526)
T COG5064         120 VEFMDEIQRDMLQFEAAWALTNIASGT-TQQTKVVVDAGAVPLFIQLLSSTE-DDVREQAVWALGNIAGDSEGCRDYVLQ  197 (526)
T ss_pred             HHHHHhcchhHHHHHHHHHHhhhccCc-ccceEEEEeCCchHHHHHHHcCch-HHHHHHHHHHhccccCCchhHHHHHHh
Confidence            4556 5566789999999999999997 778888999999999999999999 899999999999999999999999999


Q ss_pred             CCChHHHHHhhCCC--CHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCC
Q 013228           81 HGAVPIFVKLLASP--SDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPK  158 (447)
Q Consensus        81 ~~~i~~L~~ll~~~--~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~  158 (447)
                      .|++++++.++.+.  +-.+.+++.|+|+|||+...+..+.-.-...++.|..++ ...|+++...|+|++++++..+.+
T Consensus       198 ~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLi-ys~D~evlvDA~WAiSYlsDg~~E  276 (526)
T COG5064         198 CGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLI-YSRDPEVLVDACWAISYLSDGPNE  276 (526)
T ss_pred             cCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHhccCcHH
Confidence            99999999999874  458889999999999964322111111223577777777 888999999999999999988733


Q ss_pred             CCh-hhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhc
Q 013228          159 PIF-DQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAA  237 (447)
Q Consensus       159 ~~~-~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~  237 (447)
                      ... ....++.+.|+.+|.+++..++..+++.++|+...++.+.+.++++|+++.+..+|+++...+|+.+||+++|++.
T Consensus       277 ~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITA  356 (526)
T COG5064         277 KIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITA  356 (526)
T ss_pred             HHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeeccccc
Confidence            333 3347888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcC---CHHHHHHHHHcCChHHHHHHHhcCchhHHHHHH
Q 013228          238 GDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAG---NSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAA  314 (447)
Q Consensus       238 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~---~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~  314 (447)
                      ++.++.+.+++.+++|.|+.+|.+. +..++++|||+++|..++   .|+.++++++.|+++.|+++|...+..+.+.++
T Consensus       357 Gnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~L  435 (526)
T COG5064         357 GNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVAL  435 (526)
T ss_pred             CCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhH
Confidence            9999999999999999999999999 999999999999999873   678999999999999999999988888888899


Q ss_pred             HHHHHhcCCCCH----------HHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 013228          315 RAISNATFGGTH----------EQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILK  365 (447)
Q Consensus       315 ~aL~~l~~~~~~----------~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~  365 (447)
                      .++.|+...+..          .+..++-+.|+++.+..+..+.+..+...|..++..++.
T Consensus       436 D~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFg  496 (526)
T COG5064         436 DAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFG  496 (526)
T ss_pred             HHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHcc
Confidence            999999876532          233444458999999999999999999999988888874

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=2.1e-39  Score=333.72  Aligned_cols=408  Identities=20%  Similarity=0.248  Sum_probs=329.1

Q ss_pred             CcccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228            1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID   80 (447)
Q Consensus         1 lv~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (447)
                      ++.+|.++++..|..|+++|.+++.+. .+.+..+++.|++|.|+++|.+++++.+|+.|+|+|++++.++++++..+++
T Consensus       194 LV~LLsS~d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~  272 (2102)
T PLN03200        194 LVKLLSSGNSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIAD  272 (2102)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            356788999999999999999888764 5578889999999999999987654799999999999999999999999999


Q ss_pred             CCChHHHHHhhCCCC---------HHHHHHHHHHHHHhhcCChh-----------HHHHH--------------------
Q 013228           81 HGAVPIFVKLLASPS---------DDIREQAVCALGNVAADSAR-----------CRDLV--------------------  120 (447)
Q Consensus        81 ~~~i~~L~~ll~~~~---------~~i~~~a~~~L~~l~~~~~~-----------~~~~~--------------------  120 (447)
                      .|+++.|+.++.+++         ..++++++|+|+|+|.+.+.           .++..                    
T Consensus       273 aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~  352 (2102)
T PLN03200        273 AGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSA  352 (2102)
T ss_pred             CCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCch
Confidence            999999999998654         34699999999999985322           10000                    


Q ss_pred             -----Hh-cCCHHHHHHHhc-----------------------------------------cccchhHHHHHHHHHHHhc
Q 013228          121 -----LS-EEALIPLLTQLN-----------------------------------------KHAKLSMLRIATWTLSNFC  153 (447)
Q Consensus       121 -----~~-~~~l~~l~~~l~-----------------------------------------~~~~~~~~~~a~~~L~~l~  153 (447)
                           .. ..+.+.|++++.                                         ...+.+++..++|+|++++
T Consensus       353 ~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~  432 (2102)
T PLN03200        353 ESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLC  432 (2102)
T ss_pred             hhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHh
Confidence                 00 111123333331                                         2344678999999999999


Q ss_pred             CCCCCC-ChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHH
Q 013228          154 AGKPKP-IFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTV  232 (447)
Q Consensus       154 ~~~~~~-~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l  232 (447)
                      .+.... ......+++|.|+++|.+++..++..+++++++++..++++...+.+.|+++.|+++|.+++..+++.|+|+|
T Consensus       433 ~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL  512 (2102)
T PLN03200        433 CGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVL  512 (2102)
T ss_pred             CCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence            876333 3334478999999999999999999999999999988877778899999999999999999999999999999


Q ss_pred             HHhhcCChhhHHHHHhcCChHHHHHhhccCC-------------------------------------------------
Q 013228          233 VNIAAGDDFQTQCIINCGALPYLLGLLIHNH-------------------------------------------------  263 (447)
Q Consensus       233 ~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~-------------------------------------------------  263 (447)
                      +|++...+..+..+.+.|+++.|+++|+++.                                                 
T Consensus       513 ~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIl  592 (2102)
T PLN03200        513 WNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVL  592 (2102)
T ss_pred             HHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHH
Confidence            9999765444333334455555555554440                                                 


Q ss_pred             -----------------------------chhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHH
Q 013228          264 -----------------------------KKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAA  314 (447)
Q Consensus       264 -----------------------------~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~  314 (447)
                                                   +..+++.|+|+|.+++.+++++++.++..|++|.++.++.+++.+++++++
T Consensus       593 sl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA  672 (2102)
T PLN03200        593 SVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSA  672 (2102)
T ss_pred             hhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHH
Confidence                                         444555555555555555556666777888999999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHH
Q 013228          315 RAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLE  394 (447)
Q Consensus       315 ~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  394 (447)
                      |+|.+++...+.++...+++.|++++|++++++.+.+++..++.+|.+++..++.              ...+.+.|+++
T Consensus       673 ~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~--------------~~ei~~~~~I~  738 (2102)
T PLN03200        673 RALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEV--------------AAEALAEDIIL  738 (2102)
T ss_pred             HHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchH--------------HHHHHhcCcHH
Confidence            9999999877888888889999999999999999999999999999999998764              45566789999


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhcCCCC
Q 013228          395 KIENLRSHDNDEIHEKSVKILETYWCGRV  423 (447)
Q Consensus       395 ~l~~l~~~~~~~v~~~a~~~l~~~~~~~~  423 (447)
                      .|.+++.+++++.++.|.++|.+++....
T Consensus       739 ~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~  767 (2102)
T PLN03200        739 PLTRVLREGTLEGKRNAARALAQLLKHFP  767 (2102)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999988876544

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=4.7e-39  Score=331.20  Aligned_cols=411  Identities=19%  Similarity=0.189  Sum_probs=364.0

Q ss_pred             CcccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228            1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID   80 (447)
Q Consensus         1 lv~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (447)
                      ||++|...+.+.|..++++|..++.++ .+..+.+.+.|++|.|+++|.+++ +.+|..|+++|++++.++++.+..+++
T Consensus       409 LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr~aIie  486 (2102)
T PLN03200        409 LVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESKWAITA  486 (2102)
T ss_pred             hhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            467888899999999999999999875 677889999999999999999998 899999999999999988999999999


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCC
Q 013228           81 HGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPI  160 (447)
Q Consensus        81 ~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~  160 (447)
                      .|+++.|+++|.+++..+++.|+|+|+|++.+++..+..+.+.|++++++++| .+.+.+.++.++|+|.+++.......
T Consensus       487 aGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~~d~~~  565 (2102)
T PLN03200        487 AGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRTADAAT  565 (2102)
T ss_pred             CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhccchhH
Confidence            99999999999999999999999999999998888888888899999999999 55688999999999999974331110


Q ss_pred             ------------------------------------h--hhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHH
Q 013228          161 ------------------------------------F--DQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQ  202 (447)
Q Consensus       161 ------------------------------------~--~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~  202 (447)
                                                          .  ....++++.|+.+++++++.+++.|+|+|.+++....+..+
T Consensus       566 I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~  645 (2102)
T PLN03200        566 ISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCE  645 (2102)
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHH
Confidence                                                0  00246899999999999999999999999999998888888


Q ss_pred             HHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCCh-hhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcC
Q 013228          203 AVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD-FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAG  281 (447)
Q Consensus       203 ~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~  281 (447)
                      .++..|+++.++.+|.+.+.++++.++++|++++.+.. .+...+++.|+++.|+++|+++ +.+++..++.+|.|++..
T Consensus       646 avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ALanLl~~  724 (2102)
T PLN03200        646 SLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCALANLLSD  724 (2102)
T ss_pred             HHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHHHHHHcC
Confidence            89999999999999999999999999999999996543 4456678999999999999998 999999999999999886


Q ss_pred             CHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHH--HHHHHHcCChHHHHhhccCCCHHHHHH--HH
Q 013228          282 NSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQ--IKYLVREGCIKPLCDLLLCADPEIVTV--FL  357 (447)
Q Consensus       282 ~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~--~~~l~~~~~l~~L~~ll~~~~~~~~~~--a~  357 (447)
                      . +....+.+.|+++.|++++.+++++.|+.|+++|.+++.....+.  ...+...|.+.+|+.+|...|.+....  ++
T Consensus       725 ~-e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al  803 (2102)
T PLN03200        725 P-EVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEAL  803 (2102)
T ss_pred             c-hHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHH
Confidence            5 567778889999999999999999999999999999998876544  366678899999999999988876665  99


Q ss_pred             HHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 013228          358 KGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWCGR  422 (447)
Q Consensus       358 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~  422 (447)
                      .+|..+.+..+...      ...+++...++..++++.|.....+.+|.++++|.++|+++|.++
T Consensus       804 ~~l~~l~~~~~~~~------~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~  862 (2102)
T PLN03200        804 EALALLARTKGGAN------FSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQ  862 (2102)
T ss_pred             HHHHHHHhhcccCC------CCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccC
Confidence            99999998655543      345678999999999999988779999999999999999999764

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.6e-32  Score=231.83  Aligned_cols=398  Identities=19%  Similarity=0.242  Sum_probs=334.7

Q ss_pred             ccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCCh
Q 013228            5 VWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAV   84 (447)
Q Consensus         5 l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i   84 (447)
                      +.++..++|..++.++.+++..  +.....+...|++.++.++-++.+ ..+|..+..+|.++.. +.++|+.++.+|++
T Consensus       135 mmtd~vevqcnaVgCitnLaT~--d~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmTh-s~EnRr~LV~aG~l  210 (550)
T KOG4224|consen  135 MMTDGVEVQCNAVGCITNLATF--DSNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTH-SRENRRVLVHAGGL  210 (550)
T ss_pred             hcCCCcEEEeeehhhhhhhhcc--ccchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhh-hhhhhhhhhccCCc
Confidence            4567778999999999999987  667778889999999999888888 8999999999999998 88999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcC--CHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChh
Q 013228           85 PIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEE--ALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFD  162 (447)
Q Consensus        85 ~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~--~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  162 (447)
                      |.|+.++.+.++.++..|+.++++++-+.. .|+.+.+.+  .++.+++++ .+.+..++..|..+|.+++.+.......
T Consensus       211 pvLVsll~s~d~dvqyycttaisnIaVd~~-~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALrnlasdt~Yq~ei  288 (550)
T KOG4224|consen  211 PVLVSLLKSGDLDVQYYCTTAISNIAVDRR-ARKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALRNLASDTEYQREI  288 (550)
T ss_pred             hhhhhhhccCChhHHHHHHHHhhhhhhhHH-HHHHHHhcccchHHHHHHHH-hCCChHHHHHHHHHHhhhcccchhhhHH
Confidence            999999999999999999999999997765 577777777  899999999 7778899999999999999987666666


Q ss_pred             hHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCC-chhHhHHHHHHHHhhcCChh
Q 013228          163 QVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPS-PSVLTRALQTVVNIAAGDDF  241 (447)
Q Consensus       163 ~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~-~~v~~~a~~~l~~l~~~~~~  241 (447)
                      ...+.+|.++++++++-.+.......|+.|++.++-+. ..+.+.|++..|+.+|+..+ ++++-.|..+|++++..++.
T Consensus       289 v~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe-~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~  367 (550)
T KOG4224|consen  289 VEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNE-VLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEH  367 (550)
T ss_pred             HhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcc-cceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhh
Confidence            67999999999999998888888999999999876553 45788999999999998755 56999999999999998888


Q ss_pred             hHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhc
Q 013228          242 QTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNAT  321 (447)
Q Consensus       242 ~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~  321 (447)
                      ....+.+.|.++.+..++.++ .-.++.+...+++.++... .....+.+.|++|.|+.++.+.+.+++.+|+.+|.|++
T Consensus       368 n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~d-~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nls  445 (550)
T KOG4224|consen  368 NVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALND-NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLS  445 (550)
T ss_pred             hhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhcc-ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhh
Confidence            889999999999999999999 8999999999999987653 45778999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHH------cCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHH
Q 013228          322 FGGTHEQIKYLVR------EGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEK  395 (447)
Q Consensus       322 ~~~~~~~~~~l~~------~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  395 (447)
                      ..  .+....+.+      .|.-..|.+++.+.+.-++..+.|.+..++.....                         +
T Consensus       446 s~--v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~~-------------------------~  498 (550)
T KOG4224|consen  446 SD--VEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDHDL-------------------------P  498 (550)
T ss_pred             hh--hHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCCc-------------------------c
Confidence            84  344444443      35556788888888888888999999888864322                         1


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcccCCC
Q 013228          396 IENLRSHDNDEIHEKSVKILETYWCGRVAGPQPGNEGEDALGSN  439 (447)
Q Consensus       396 l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~  439 (447)
                      +..+.. .+.++-+.+..+.++.-...+.++-|+.+.-.++...
T Consensus       499 ~~~~i~-~~ddii~~~~~~~~r~~~~g~~~~~~g~~~~~s~~~~  541 (550)
T KOG4224|consen  499 LTAFIQ-SSDDIIELLNDIVARDANNGEYEDGEGDVILLSGRAL  541 (550)
T ss_pred             HHHHHh-CchhHHHHHHHHHHHhccCCcccCCCCcccccCcchh
Confidence            222322 3355667888888888777777776666533444333

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2e-32  Score=231.28  Aligned_cols=396  Identities=19%  Similarity=0.229  Sum_probs=340.1

Q ss_pred             ccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCC
Q 013228            3 AGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHG   82 (447)
Q Consensus         3 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~   82 (447)
                      .++++.++.++..|..++.+++-.  .+..-.+++.+++..|+.-+..+. .++|..++.|+++++. .++++..+...|
T Consensus        92 ~llqs~d~~Iq~aa~~alGnlAVn--~enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT-~d~nk~kiA~sG  167 (550)
T KOG4224|consen   92 ALLQSCDKCIQCAAGEALGNLAVN--MENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLAT-FDSNKVKIARSG  167 (550)
T ss_pred             HHHhCcchhhhhhhhhhhccceec--cCCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhc-cccchhhhhhcc
Confidence            357889999999999999999876  566667778888888887777777 6999999999999998 578899999999


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChh
Q 013228           83 AVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFD  162 (447)
Q Consensus        83 ~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  162 (447)
                      ++.++.++-++.+..+++++..+|.|+....+ .|+.+...|+++.++.++ ++.|..++.+++.++++++.+...++..
T Consensus       168 aL~pltrLakskdirvqrnatgaLlnmThs~E-nRr~LV~aG~lpvLVsll-~s~d~dvqyycttaisnIaVd~~~Rk~L  245 (550)
T KOG4224|consen  168 ALEPLTRLAKSKDIRVQRNATGALLNMTHSRE-NRRVLVHAGGLPVLVSLL-KSGDLDVQYYCTTAISNIAVDRRARKIL  245 (550)
T ss_pred             chhhhHhhcccchhhHHHHHHHHHHHhhhhhh-hhhhhhccCCchhhhhhh-ccCChhHHHHHHHHhhhhhhhHHHHHHH
Confidence            99999998888999999999999999986654 678888999999999999 8889999999999999999876444443


Q ss_pred             hH--hhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCCh
Q 013228          163 QV--RPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD  240 (447)
Q Consensus       163 ~~--~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~  240 (447)
                      ..  ..++|.|+.++++++++++-.|..+|+|++.....+ ..+.+.|.+|.++++++++..........|+.|++-+.-
T Consensus       246 aqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq-~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihpl  324 (550)
T KOG4224|consen  246 AQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQ-REIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPL  324 (550)
T ss_pred             HhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhh-hHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccC
Confidence            33  349999999999999999999999999999766554 568899999999999999998888999999999987543


Q ss_pred             hhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHh
Q 013228          241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNA  320 (447)
Q Consensus       241 ~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l  320 (447)
                       ....+.+.|++..|+.+|+.+++.+++-.|..+|.|++..+..+...+.+.|.+|.+..++-++...++.+...++..+
T Consensus       325 -Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~L  403 (550)
T KOG4224|consen  325 -NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQL  403 (550)
T ss_pred             -cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHH
Confidence             3345788999999999999886778999999999999988888899999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHH-----hchHHH
Q 013228          321 TFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEE-----AEGLEK  395 (447)
Q Consensus       321 ~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~-----~~~~~~  395 (447)
                      +.+.  ..+..+.+.|.++.|+.++.+.+.+++..+..+|.|+....+.             |.+.++.     .|.--+
T Consensus       404 al~d--~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~-------------YarviEawd~P~~gi~g~  468 (550)
T KOG4224|consen  404 ALND--NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEH-------------YARVIEAWDHPVQGIQGR  468 (550)
T ss_pred             Hhcc--ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHH-------------HHHHHHHhcCcchhHHHH
Confidence            8853  5678899999999999999999999999999999999876444             4444442     234456


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhcCC
Q 013228          396 IENLRSHDNDEIHEKSVKILETYWCG  421 (447)
Q Consensus       396 l~~l~~~~~~~v~~~a~~~l~~~~~~  421 (447)
                      |..+..++.-.+...|.|-+..+.++
T Consensus       469 L~Rfl~S~~~tf~hia~wTI~qLle~  494 (550)
T KOG4224|consen  469 LARFLASHELTFRHIARWTIQQLLED  494 (550)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence            77778888888888888888877653

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.96  E-value=2.9e-26  Score=219.20  Aligned_cols=378  Identities=20%  Similarity=0.205  Sum_probs=314.1

Q ss_pred             HHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHh
Q 013228           11 NMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKL   90 (447)
Q Consensus        11 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l   90 (447)
                      .+.+.+...|.+++..  ......+.+.|+++.|+++|++++ .++...++.+|.+++. ..+++..+.+.|+++.|.++
T Consensus       264 qLlrv~~~lLlNLAed--~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~kL  339 (708)
T PF05804_consen  264 QLLRVAFYLLLNLAED--PRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSI-FKENKDEMAESGIVEKLLKL  339 (708)
T ss_pred             HHHHHHHHHHHHHhcC--hHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHH
Confidence            4555677788899876  567778899999999999999998 8999999999999999 78899999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHH
Q 013228           91 LASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPA  170 (447)
Q Consensus        91 l~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~  170 (447)
                      +.+++..++..++++|.||+.+.. .|..+.+.|++|.++.+|. +  +..+..++.+|++++.+..........+++|.
T Consensus       340 l~s~~~~l~~~aLrlL~NLSfd~~-~R~~mV~~GlIPkLv~LL~-d--~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~  415 (708)
T PF05804_consen  340 LPSENEDLVNVALRLLFNLSFDPE-LRSQMVSLGLIPKLVELLK-D--PNFREVALKILYNLSMDDEARSMFAYTDCIPQ  415 (708)
T ss_pred             hcCCCHHHHHHHHHHHHHhCcCHH-HHHHHHHCCCcHHHHHHhC-C--CchHHHHHHHHHHhccCHhhHHHHhhcchHHH
Confidence            999999999999999999998866 6889999999999999994 3  34567799999999998765555566789999


Q ss_pred             HHHhh-ccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhc
Q 013228          171 LAQLV-HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINC  249 (447)
Q Consensus       171 l~~ll-~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~  249 (447)
                      +++++ ..+++.+...++..+.|++.+... .+.+.+.++++.|+...-.....   ..+..+.|++.+.+.....+.  
T Consensus       416 L~~~Ll~~~~~~v~~eliaL~iNLa~~~rn-aqlm~~g~gL~~L~~ra~~~~D~---lLlKlIRNiS~h~~~~k~~f~--  489 (708)
T PF05804_consen  416 LMQMLLENSEEEVQLELIALLINLALNKRN-AQLMCEGNGLQSLMKRALKTRDP---LLLKLIRNISQHDGPLKELFV--  489 (708)
T ss_pred             HHHHHHhCCCccccHHHHHHHHHHhcCHHH-HHHHHhcCcHHHHHHHHHhcccH---HHHHHHHHHHhcCchHHHHHH--
Confidence            99875 456777888889999999976644 57788889999999887543332   245688899987754444443  


Q ss_pred             CChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--chhHHHHHHHHHHHhcCCCCHH
Q 013228          250 GALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNA--EFDIKNWAARAISNATFGGTHE  327 (447)
Q Consensus       250 ~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~--~~~v~~~a~~aL~~l~~~~~~~  327 (447)
                      +++..|+.++..+.+.+..-++.++|+|+...+.+..+.+.+.+++|.+.+.|..+  ++++..+++..++.++.  +++
T Consensus       490 ~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~--d~~  567 (708)
T PF05804_consen  490 DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS--DPE  567 (708)
T ss_pred             HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC--CHH
Confidence            47778888888776889999999999999876545444455689999999999854  56899999999999997  678


Q ss_pred             HHHHHHHcCChHHHHhhccC--CCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCH
Q 013228          328 QIKYLVREGCIKPLCDLLLC--ADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDND  405 (447)
Q Consensus       328 ~~~~l~~~~~l~~L~~ll~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~  405 (447)
                      ....+.+.|+++.|++++..  .|.+++.+.+.++++++...+..             ...+.+.++...+..++++.|+
T Consensus       568 ~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr-------------~~ll~~~~~~~ylidL~~d~N~  634 (708)
T PF05804_consen  568 CAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETR-------------EVLLKETEIPAYLIDLMHDKNA  634 (708)
T ss_pred             HHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHH-------------HHHHhccchHHHHHHHhcCCCH
Confidence            88888999999999999976  46789999999999999886653             4566778999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 013228          406 EIHEKSVKILET  417 (447)
Q Consensus       406 ~v~~~a~~~l~~  417 (447)
                      +|++.|..+|.-
T Consensus       635 ~ir~~~d~~Ldi  646 (708)
T PF05804_consen  635 EIRKVCDNALDI  646 (708)
T ss_pred             HHHHHHHHHHHH
Confidence            999888777655

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.95  E-value=4.5e-25  Score=211.10  Aligned_cols=355  Identities=19%  Similarity=0.213  Sum_probs=295.7

Q ss_pred             CcccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228            1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID   80 (447)
Q Consensus         1 lv~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (447)
                      |++.|.+++.++...++..|.+++..  .++...|.+.|+++.|++++.+++ .+++..++++|.|++. +++.|..+++
T Consensus       295 Lv~~Ldr~n~ellil~v~fLkkLSi~--~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSf-d~~~R~~mV~  370 (708)
T PF05804_consen  295 LVKCLDRENEELLILAVTFLKKLSIF--KENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSF-DPELRSQMVS  370 (708)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCc-CHHHHHHHHH
Confidence            45678899999999999999999987  678999999999999999999998 8999999999999999 7899999999


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCC
Q 013228           81 HGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPI  160 (447)
Q Consensus        81 ~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~  160 (447)
                      .|++|.|+.++.+  +..+..++.+|.++|.++. .+..+...++++.+++++..++++.+...+.+.+.|++.+.....
T Consensus       371 ~GlIPkLv~LL~d--~~~~~val~iLy~LS~dd~-~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaq  447 (708)
T PF05804_consen  371 LGLIPKLVELLKD--PNFREVALKILYNLSMDDE-ARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQ  447 (708)
T ss_pred             CCCcHHHHHHhCC--CchHHHHHHHHHHhccCHh-hHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHH
Confidence            9999999999975  4566789999999998765 788888899999999998777778888889999999999875554


Q ss_pred             hhhHhhhHHHHHHhh-ccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-CCchhHhHHHHHHHHhhcC
Q 013228          161 FDQVRPALPALAQLV-HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH-PSPSVLTRALQTVVNIAAG  238 (447)
Q Consensus       161 ~~~~~~~l~~l~~ll-~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~~~v~~~a~~~l~~l~~~  238 (447)
                      .....++++.|+... +..|+-    .+..++|++.+++.....+.  +.+..|+..+.. ++++....++.+|+|+...
T Consensus       448 lm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~  521 (708)
T PF05804_consen  448 LMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIP  521 (708)
T ss_pred             HHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccC
Confidence            444467888888764 444433    45689999988754333333  467777777755 5678999999999999987


Q ss_pred             ChhhHHHHHhcCChHHHHHhhccCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc--CchhHHHHHHH
Q 013228          239 DDFQTQCIINCGALPYLLGLLIHNH-KKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQN--AEFDIKNWAAR  315 (447)
Q Consensus       239 ~~~~~~~~~~~~~l~~l~~~l~~~~-~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~--~~~~v~~~a~~  315 (447)
                      +......+.+.+++|.+.+.|..+. ..++.-+++..++.++. ++.....+.+.|+++.|++++..  +|.++....++
T Consensus       522 ~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~  600 (708)
T PF05804_consen  522 DLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILY  600 (708)
T ss_pred             CcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHH
Confidence            6666666667899999999997542 45788999999999876 45777888899999999999984  57899999999


Q ss_pred             HHHHhcCCCCHHHHHHHH-HcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhh
Q 013228          316 AISNATFGGTHEQIKYLV-REGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEK  371 (447)
Q Consensus       316 aL~~l~~~~~~~~~~~l~-~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~  371 (447)
                      ++..+..+.  +.+..+. +.+++..|+.++++.+++++..|-.+|.-+...++...
T Consensus       601 ~f~~ll~h~--~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~  655 (708)
T PF05804_consen  601 VFYQLLFHE--ETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWA  655 (708)
T ss_pred             HHHHHHcCh--HHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence            999999964  4455554 47899999999999999999999999999999887654

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.88  E-value=2.2e-20  Score=174.89  Aligned_cols=366  Identities=20%  Similarity=0.227  Sum_probs=285.8

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChh--HH
Q 013228           40 VVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSAR--CR  117 (447)
Q Consensus        40 ~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~--~~  117 (447)
                      -+|..+.+|.+++ +.+|..|+.-+..++.++.+.+..+.+.|+|+.|+.++.++..+++.+++++|.||......  .+
T Consensus       234 ~lpe~i~mL~~q~-~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK  312 (717)
T KOG1048|consen  234 TLPEVISMLMSQD-PSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK  312 (717)
T ss_pred             ccHHHHHHHhccC-hhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence            4788899999999 89999999999999999999999999999999999999999999999999999999966654  67


Q ss_pred             HHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhcc----------C----ChhHH
Q 013228          118 DLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHS----------N----DKEVM  183 (447)
Q Consensus       118 ~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~----------~----~~~v~  183 (447)
                      -.+.+.++++.++++|+...|.++++.+..+||||++++ ..........++.|..-+-.          +    +..+.
T Consensus       313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf  391 (717)
T KOG1048|consen  313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF  391 (717)
T ss_pred             hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence            778899999999999987789999999999999999984 55555666777766654321          1    25677


Q ss_pred             HHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHhcC------CCCchhHhHHHHHHHHhhcCCh-----h----------
Q 013228          184 TDACRALFYLSEGTNDEIQAVIEA-GVCPRLVELLG------HPSPSVLTRALQTVVNIAAGDD-----F----------  241 (447)
Q Consensus       184 ~~al~~l~~l~~~~~~~~~~~~~~-~~~~~L~~lL~------~~~~~v~~~a~~~l~~l~~~~~-----~----------  241 (447)
                      ..+..+|+|++....+..+.+.+. |++..|+..++      +.+..-.+.++.++.|+...-.     .          
T Consensus       392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~  471 (717)
T KOG1048|consen  392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR  471 (717)
T ss_pred             ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence            889999999998777766777665 88899888875      2455566777777888763211     0          


Q ss_pred             ----------------hHHH----------------------HHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCC-
Q 013228          242 ----------------QTQC----------------------IINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGN-  282 (447)
Q Consensus       242 ----------------~~~~----------------------~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~-  282 (447)
                                      ..+.                      +....++..-..++....+..+.+.++++|-|++.+. 
T Consensus       472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~  551 (717)
T KOG1048|consen  472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW  551 (717)
T ss_pred             cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence                            0000                      0111223333444443336778899999999999842 


Q ss_pred             ---HHHHHHH-HHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCC------HHH
Q 013228          283 ---SEHIQAV-IDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCAD------PEI  352 (447)
Q Consensus       283 ---~~~~~~l-~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~------~~~  352 (447)
                         ......+ .+..++|.|++++..++..+...++.+|.||+.+  +..... +..++++.|++.|....      .++
T Consensus       552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d--~rnk~l-igk~a~~~lv~~Lp~~~~~~~~sedt  628 (717)
T KOG1048|consen  552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD--IRNKEL-IGKYAIPDLVRCLPGSGPSTSLSEDT  628 (717)
T ss_pred             cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC--chhhhh-hhcchHHHHHHhCcCCCCCcCchHHH
Confidence               2233334 4678999999999999999999999999999984  444444 45789999999997643      588


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhc-CCCHHHHHHHHHHHHHhcCCCC
Q 013228          353 VTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRS-HDNDEIHEKSVKILETYWCGRV  423 (447)
Q Consensus       353 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~-~~~~~v~~~a~~~l~~~~~~~~  423 (447)
                      ...++..|.+++.....             .++.+.+.++++.|..+.. ..++++.++|..++..+|...|
T Consensus       629 v~~vc~tl~niv~~~~~-------------nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~e  687 (717)
T KOG1048|consen  629 VRAVCHTLNNIVRKNVL-------------NAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKE  687 (717)
T ss_pred             HHHHHHhHHHHHHHhHH-------------HHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999965443             2566777999999998854 4577999999999999998665

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=1.5e-18  Score=162.17  Aligned_cols=383  Identities=19%  Similarity=0.252  Sum_probs=302.9

Q ss_pred             cccccCC-CHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228            2 VAGVWSD-DNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID   80 (447)
Q Consensus         2 v~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (447)
                      +++|+.. |+..|++|+..|+.+++..+.+...-+--..++|.|+.+|+++.+.++...|+++|.+++.--|.....+++
T Consensus       173 L~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~  252 (1051)
T KOG0168|consen  173 LQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVD  252 (1051)
T ss_pred             HHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeec
Confidence            4566665 999999999999999887656665555455689999999999988999999999999999988999999999


Q ss_pred             CCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCC
Q 013228           81 HGAVPIFVKLLAS-PSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKP  159 (447)
Q Consensus        81 ~~~i~~L~~ll~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~  159 (447)
                      .++||.|+.-|.. ...++.++++.+|-.|++..+   ..+++.|++...+..+ ......+++.|+.+..|+|..-+..
T Consensus       253 ~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Cksi~sd  328 (1051)
T KOG0168|consen  253 EHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCKSIRSD  328 (1051)
T ss_pred             ccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            9999999986654 789999999999999998765   4678999999999999 6777889999999999999988777


Q ss_pred             ChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhcc---CCcHHHHHHHHhCcHHHHHHhcCCCC----chhHhHHHHHH
Q 013228          160 IFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSE---GTNDEIQAVIEAGVCPRLVELLGHPS----PSVLTRALQTV  232 (447)
Q Consensus       160 ~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~---~~~~~~~~~~~~~~~~~L~~lL~~~~----~~v~~~a~~~l  232 (447)
                      ....+...+|.|..+|+..|.+..+.++-++..++.   +.++..+.+...|++....+++.-..    ..+....++.+
T Consensus       329 ~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrml  408 (1051)
T KOG0168|consen  329 EFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRML  408 (1051)
T ss_pred             cchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHH
Confidence            777888999999999999999999999999999884   45567777888899999999985432    34566678888


Q ss_pred             HHhhcCChhhHHHHHhcCChHHHHHhhccCC-------------chhHHHHHHH--------------------------
Q 013228          233 VNIAAGDDFQTQCIINCGALPYLLGLLIHNH-------------KKSIKTDACW--------------------------  273 (447)
Q Consensus       233 ~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~-------------~~~v~~~a~~--------------------------  273 (447)
                      ..++.+++-....+.+.++...+..+|.+..             .+.-..+...                          
T Consensus       409 s~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~  488 (1051)
T KOG0168|consen  409 SLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIV  488 (1051)
T ss_pred             HHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccc
Confidence            8888888877777888888888877774320             0000000000                          


Q ss_pred             ----------------------HHHHHh--------------------------cCCHHHHHHHHHcCChHHHHHHHhcC
Q 013228          274 ----------------------TISNIT--------------------------AGNSEHIQAVIDAGLIGPLVNLLQNA  305 (447)
Q Consensus       274 ----------------------~l~nl~--------------------------~~~~~~~~~l~~~~~~~~L~~~l~~~  305 (447)
                                            +.+.+.                          ...|+..+.+.+. ++|.|++++.+.
T Consensus       489 n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~~-llpVLveVYsSs  567 (1051)
T KOG0168|consen  489 NLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGKD-LLPVLVEVYSSS  567 (1051)
T ss_pred             cccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHHH-HHHHHHHHHhcc
Confidence                                  000010                          0112223333332 789999998865


Q ss_pred             -chhHHHHHHHHHHHhcCCCCHHHHHHHHHc-CChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHH
Q 013228          306 -EFDIKNWAARAISNATFGGTHEQIKYLVRE-GCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQY  383 (447)
Q Consensus       306 -~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~-~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~  383 (447)
                       ++.||..++.+|..+....+.+.+..++.+ .+-..+-.+|.++|..+..-|+....-|++.-++            .|
T Consensus       568 A~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd------------~F  635 (1051)
T KOG0168|consen  568 ANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPD------------TF  635 (1051)
T ss_pred             CCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHH------------Hh
Confidence             899999999999999998888887776654 5556778899999999998899888888876444            37


Q ss_pred             HHHHHHhchHHHHHHHhc
Q 013228          384 AQLVEEAEGLEKIENLRS  401 (447)
Q Consensus       384 ~~~i~~~~~~~~l~~l~~  401 (447)
                      ...|.++|.+..+..|..
T Consensus       636 ~~~F~REGV~~~v~~L~~  653 (1051)
T KOG0168|consen  636 SPSFRREGVFHAVKQLSV  653 (1051)
T ss_pred             hhhHhhhhHHHHHHHHhc
Confidence            888999999999999976

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.84  E-value=8.5e-19  Score=164.36  Aligned_cols=357  Identities=20%  Similarity=0.230  Sum_probs=272.9

Q ss_pred             cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChh--hHHHHH
Q 013228            2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSE--DTKVVI   79 (447)
Q Consensus         2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~   79 (447)
                      |..|.+.++.+|..|+.++..++-+. +.-...+.+.|+++.|+.+|.++. .+|+.+|+++|.|++.++..  ++..+.
T Consensus       239 i~mL~~q~~~~qsnaaaylQHlcfgd-~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~~NKlai~  316 (717)
T KOG1048|consen  239 ISMLMSQDPSVQSNAAAYLQHLCFGD-NKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTDSNKLAIK  316 (717)
T ss_pred             HHHHhccChhhhHHHHHHHHHHHhhh-HHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCcccchhhh
Confidence            45688999999999999999998775 555667778899999999999999 89999999999999987666  888899


Q ss_pred             hCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhc-cc------------cchhHHHHH
Q 013228           80 DHGAVPIFVKLLAS-PSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLN-KH------------AKLSMLRIA  145 (447)
Q Consensus        80 ~~~~i~~L~~ll~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~-~~------------~~~~~~~~a  145 (447)
                      +.++++.++++|+. .|.++++.+..+|+||++.+. ++..+.. ..+..|..... ..            .+.++..++
T Consensus       317 ~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~-lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~  394 (717)
T KOG1048|consen  317 ELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDA-LKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNV  394 (717)
T ss_pred             hcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhH-HHHHHHH-HHHHHHHHhhcccccccCCCCcccccccceeeehh
Confidence            99999999999987 799999999999999998744 4444433 34555555442 11            136789999


Q ss_pred             HHHHHHhcCCCC--CCChhhHhhhHHHHHHhhc------cCChhHHHHHHHHHHHhccCCc-----H-------------
Q 013228          146 TWTLSNFCAGKP--KPIFDQVRPALPALAQLVH------SNDKEVMTDACRALFYLSEGTN-----D-------------  199 (447)
Q Consensus       146 ~~~L~~l~~~~~--~~~~~~~~~~l~~l~~ll~------~~~~~v~~~al~~l~~l~~~~~-----~-------------  199 (447)
                      ..||.|++....  ...+....|++..|+..++      ..|.+-.++++..++|++..-.     .             
T Consensus       395 tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~  474 (717)
T KOG1048|consen  395 TGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPG  474 (717)
T ss_pred             hhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccccccc
Confidence            999999998652  2233334788888888776      3467778889999999984321     0             


Q ss_pred             -------------HHHH----------------------HHHhCcHHHHHHhc-CCCCchhHhHHHHHHHHhhcCCh---
Q 013228          200 -------------EIQA----------------------VIEAGVCPRLVELL-GHPSPSVLTRALQTVVNIAAGDD---  240 (447)
Q Consensus       200 -------------~~~~----------------------~~~~~~~~~L~~lL-~~~~~~v~~~a~~~l~~l~~~~~---  240 (447)
                                   +.+.                      +....++..-+.+| .+.+..+.+.++.+|.|++.+..   
T Consensus       475 ~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~  554 (717)
T KOG1048|consen  475 VGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWS  554 (717)
T ss_pred             CCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcch
Confidence                         0000                      01111233323333 33566788999999999987654   


Q ss_pred             -hhHHHH-HhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC------chhHHHH
Q 013228          241 -FQTQCI-INCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNA------EFDIKNW  312 (447)
Q Consensus       241 -~~~~~~-~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~------~~~v~~~  312 (447)
                       ..+..+ .+..+++.++++|+.+ +..+...++.+|.|++.+. . .+.++..++++.|++.|...      +.++...
T Consensus       555 ~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d~-r-nk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~  631 (717)
T KOG1048|consen  555 EYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRDI-R-NKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRA  631 (717)
T ss_pred             hHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccCc-h-hhhhhhcchHHHHHHhCcCCCCCcCchHHHHHH
Confidence             223333 6778999999999999 9999999999999998763 3 34566688999999999843      3688889


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCC-CHHHHHHHHHHHHHHHHh
Q 013228          313 AARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCA-DPEIVTVFLKGLEKILKV  366 (447)
Q Consensus       313 a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~~~~~a~~~l~~l~~~  366 (447)
                      ++.+|.++... +....+.+.+.+.++.|+.+..+. ++...+++...|..|=.+
T Consensus       632 vc~tl~niv~~-~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y  685 (717)
T KOG1048|consen  632 VCHTLNNIVRK-NVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQY  685 (717)
T ss_pred             HHHhHHHHHHH-hHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence            99999999876 678888899999999999998874 457777777777776544

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.82  E-value=1.3e-16  Score=151.76  Aligned_cols=368  Identities=18%  Similarity=0.212  Sum_probs=279.0

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 013228           41 VPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV  120 (447)
Q Consensus        41 v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~  120 (447)
                      .+.+..+|++.+ .+....++.+|..+.... .....  ..+..+.|...|.++++.+|+.+++.++++..++......+
T Consensus        40 ~~~lf~~L~~~~-~e~v~~~~~iL~~~l~~~-~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~  115 (503)
T PF10508_consen   40 EPVLFDCLNTSN-REQVELICDILKRLLSAL-SPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLL  115 (503)
T ss_pred             HHHHHHHHhhcC-hHHHHHHHHHHHHHHhcc-CHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHh
Confidence            344778888877 677788889999888732 22222  44677899999999999999999999999998888777788


Q ss_pred             HhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHH
Q 013228          121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDE  200 (447)
Q Consensus       121 ~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~  200 (447)
                      .+.+.++.++..+ .+++.++...|..+|..++...+........+.++.|..++..+++.++..++.++.+++..+++.
T Consensus       116 ~~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~  194 (503)
T PF10508_consen  116 VDNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEA  194 (503)
T ss_pred             cCccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHH
Confidence            8889999999999 888999999999999999987644433334666888999998888899999999999999999988


Q ss_pred             HHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchh-----HHHHHHHHH
Q 013228          201 IQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKS-----IKTDACWTI  275 (447)
Q Consensus       201 ~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~-----v~~~a~~~l  275 (447)
                      ...+.+.|+++.++..+.+++.-++..++.++..++. .+...+.+.+.|+++.|..++.+.....     +-.......
T Consensus       195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~  273 (503)
T PF10508_consen  195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFF  273 (503)
T ss_pred             HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHH
Confidence            8888999999999999999888899999999999999 6667788999999999999997652222     112233556


Q ss_pred             HHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHH-HHcC-----ChHHHHhhccCCC
Q 013228          276 SNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYL-VREG-----CIKPLCDLLLCAD  349 (447)
Q Consensus       276 ~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l-~~~~-----~l~~L~~ll~~~~  349 (447)
                      ++++...+..+.... ..++..+.+++.+.|+..+..|..+++.++.  +.+....+ ...+     ++..+.....+..
T Consensus       274 g~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs--t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~  350 (503)
T PF10508_consen  274 GNLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVAFDTLGQIGS--TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGS  350 (503)
T ss_pred             HHHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHhC--CHHHHHHHHhhcchHHHHHHHHHHHHhcCCc
Confidence            677664444332222 2366677777888999999999999999986  55666666 3322     3555555566777


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHH--hchHH-HHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 013228          350 PEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEE--AEGLE-KIENLRSHDNDEIHEKSVKILETYWCG  421 (447)
Q Consensus       350 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~-~l~~l~~~~~~~v~~~a~~~l~~~~~~  421 (447)
                      .+++..++.++.+++...+.......    .+.....+..  .+... .+..+..+|=+|++-.+.+++..++..
T Consensus       351 ~~lk~r~l~al~~il~~~~~~~~~~i----~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~  421 (503)
T PF10508_consen  351 TELKLRALHALASILTSGTDRQDNDI----LSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ  421 (503)
T ss_pred             hHHHHHHHHHHHHHHhcCCCCchHHH----HHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence            89999999999999876654211100    0111122222  22233 677888888899999999999887653

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.81  E-value=3.5e-16  Score=148.93  Aligned_cols=394  Identities=16%  Similarity=0.173  Sum_probs=292.6

Q ss_pred             cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228            2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH   81 (447)
Q Consensus         2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (447)
                      +..|++.+.+....++..|.++....  .. ..+ ..+..+.|...|.+++ +.||..+++.+++++.++......+.+.
T Consensus        44 f~~L~~~~~e~v~~~~~iL~~~l~~~--~~-~~l-~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~~~~  118 (503)
T PF10508_consen   44 FDCLNTSNREQVELICDILKRLLSAL--SP-DSL-LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLLVDN  118 (503)
T ss_pred             HHHHhhcChHHHHHHHHHHHHHHhcc--CH-HHH-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence            34567777778888888898888753  22 222 4567899999999999 9999999999999999888878888899


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCCh
Q 013228           82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIF  161 (447)
Q Consensus        82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~  161 (447)
                      ++++.++..+.+++..+...|+.+|.+++...+.. +.+...+.+..+..++ ...+..++..+..++.+++..++....
T Consensus       119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~~~~  196 (503)
T PF10508_consen  119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPEAAE  196 (503)
T ss_pred             cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHHHHH
Confidence            99999999999999999999999999999887754 4566777788888888 444667888899999999987643333


Q ss_pred             hh-HhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCch-----hH-hHHHHHHHH
Q 013228          162 DQ-VRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPS-----VL-TRALQTVVN  234 (447)
Q Consensus       162 ~~-~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~-----v~-~~a~~~l~~  234 (447)
                      .. ..|+++.++..+.++|.-++..++.++..++. .+...+.+.+.|+++.|...+.+.+.+     +. ...+...++
T Consensus       197 ~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~  275 (503)
T PF10508_consen  197 AVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGN  275 (503)
T ss_pred             HHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHH
Confidence            33 36899999999999999999999999999998 445567889999999999999653222     22 223467777


Q ss_pred             hhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHH-HHcC-----ChHHHHHHHhcCchh
Q 013228          235 IAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAV-IDAG-----LIGPLVNLLQNAEFD  308 (447)
Q Consensus       235 l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l-~~~~-----~~~~L~~~l~~~~~~  308 (447)
                      ++...+....... ..++..+..++.+. +...+..|.-+++.+++. .+....+ ...+     ++..+.....++..+
T Consensus       276 la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~  352 (503)
T PF10508_consen  276 LARVSPQEVLELY-PAFLERLFSMLESQ-DPTIREVAFDTLGQIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTE  352 (503)
T ss_pred             HHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhcCCchH
Confidence            7775443322111 23556667777788 999999999999999864 4556666 3332     344444455567789


Q ss_pred             HHHHHHHHHHHhcCCCCH---HH----HHHH---HHcCChH-HHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhc
Q 013228          309 IKNWAARAISNATFGGTH---EQ----IKYL---VREGCIK-PLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAI  377 (447)
Q Consensus       309 v~~~a~~aL~~l~~~~~~---~~----~~~l---~~~~~l~-~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~  377 (447)
                      +|..+..++.++......   +.    .+..   ...+... .+..+++.+=++++.+++..|..++...-.        
T Consensus       353 lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg--------  424 (503)
T PF10508_consen  353 LKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWG--------  424 (503)
T ss_pred             HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHH--------
Confidence            999999999999654332   11    1111   1234455 777888777799999999999999976432        


Q ss_pred             ccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 013228          378 GDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYW  419 (447)
Q Consensus       378 ~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  419 (447)
                           ........|+++.+.+=....+++.+++=-.++.++.
T Consensus       425 -----~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~  461 (503)
T PF10508_consen  425 -----QREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALA  461 (503)
T ss_pred             -----HHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHH
Confidence                 2455666777888876666667776666566666655

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.81  E-value=6.9e-17  Score=136.23  Aligned_cols=311  Identities=12%  Similarity=0.129  Sum_probs=256.6

Q ss_pred             cCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCC-CCHHHHHHHHHHHHHHcCCChhhHHHHHhCCCh
Q 013228            6 WSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMRE-DYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAV   84 (447)
Q Consensus         6 ~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i   84 (447)
                      .+++..+...++.+|..+..+.     ..+.+..++..++++|... ++.++-...+.++..-+..++.+|+.+++.+++
T Consensus       117 ~~~~~~~l~ksL~al~~lt~~q-----pdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il  191 (461)
T KOG4199|consen  117 ESPNESVLKKSLEAINSLTHKQ-----PDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKIL  191 (461)
T ss_pred             hCCchhHHHHHHHHHHHhhcCC-----cchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH
Confidence            5677888889999988887663     2356677889999988543 237888889999999998899999999999999


Q ss_pred             HHHHHhhCC-CCHHHHHHHHHHHHHhhcCCh---------hHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcC
Q 013228           85 PIFVKLLAS-PSDDIREQAVCALGNVAADSA---------RCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCA  154 (447)
Q Consensus        85 ~~L~~ll~~-~~~~i~~~a~~~L~~l~~~~~---------~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~  154 (447)
                      +.+.+.+.. ....+.+...|++.-+..+++         .....+...+++..|++.+...-++.+...++.+|..++-
T Consensus       192 ~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAV  271 (461)
T KOG4199|consen  192 ELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAV  271 (461)
T ss_pred             HHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHH
Confidence            999976654 455688899999999886553         3456677788899999999878889999999999999998


Q ss_pred             CCCCCChhhHhhhHHHHHHhhccC-Chh---HHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhc--CCCCchhHhHH
Q 013228          155 GKPKPIFDQVRPALPALAQLVHSN-DKE---VMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELL--GHPSPSVLTRA  228 (447)
Q Consensus       155 ~~~~~~~~~~~~~l~~l~~ll~~~-~~~---v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL--~~~~~~v~~~a  228 (447)
                      ..+........|++..+++++.+. +..   ....++..|+.++.+++. ...+++.|+.+.++.++  ..++|.+...+
T Consensus       272 r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~Dsv-Ks~IV~~gg~~~ii~l~~~h~~~p~Vi~~~  350 (461)
T KOG4199|consen  272 RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSV-KSTIVEKGGLDKIITLALRHSDDPLVIQEV  350 (461)
T ss_pred             HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCch-HHHHHHhcChHHHHHHHHHcCCChHHHHHH
Confidence            765555555689999999999874 333   456788889999866554 46799999999999988  34778999999


Q ss_pred             HHHHHHhhcCChhhHHHHHhcCChHHHHHhhc-cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCch
Q 013228          229 LQTVVNIAAGDDFQTQCIINCGALPYLLGLLI-HNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEF  307 (447)
Q Consensus       229 ~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~-~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~  307 (447)
                      +.+++-++-..++....+++.|+-...++.++ ++....+++.+||++.|++..+.+++..++.. +++.|+......++
T Consensus       351 ~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li~~A~~~h~  429 (461)
T KOG4199|consen  351 MAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN-GIEKLIRTAKANHE  429 (461)
T ss_pred             HHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc-cHHHHHHHHHhcCc
Confidence            99999999888888889999999999999887 55567899999999999999888877777766 67888888888999


Q ss_pred             hHHHHHHHHHHHhcCC
Q 013228          308 DIKNWAARAISNATFG  323 (447)
Q Consensus       308 ~v~~~a~~aL~~l~~~  323 (447)
                      ..+..|..+|..+-..
T Consensus       430 tce~~akaALRDLGc~  445 (461)
T KOG4199|consen  430 TCEAAAKAALRDLGCD  445 (461)
T ss_pred             cHHHHHHHHHHhcCcc
Confidence            9999999999998763

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.80  E-value=2.6e-17  Score=161.43  Aligned_cols=350  Identities=19%  Similarity=0.206  Sum_probs=269.8

Q ss_pred             HHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCC--CHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHH---
Q 013228           14 LEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMRED--YPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFV---   88 (447)
Q Consensus        14 ~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~---   88 (447)
                      .+-++.|..+.+.  .+....+...|+++.|+++|.-++  +.+.+..|-.+|.|+....++....-.+..++..|-   
T Consensus       212 ee~ar~fLemSss--~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIr  289 (2195)
T KOG2122|consen  212 EEMARTFLEMSSS--PESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIR  289 (2195)
T ss_pred             HHHHHHHHHhccC--chhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHH
Confidence            4555666666654  566778889999999999997654  267889999999999986665443322222222221   


Q ss_pred             -------HhhCC------C-CHHHH-HHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcc-----------ccchhHH
Q 013228           89 -------KLLAS------P-SDDIR-EQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNK-----------HAKLSML  142 (447)
Q Consensus        89 -------~ll~~------~-~~~i~-~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~-----------~~~~~~~  142 (447)
                             ..+..      + ..+-+ ..|+.+|..++.+. ++|..+.+.|++..+-+++.-           .....++
T Consensus       290 aYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDE-EhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLR  368 (2195)
T KOG2122|consen  290 AYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDE-EHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALR  368 (2195)
T ss_pred             HHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccH-HHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Confidence                   12221      1 12222 36777788877664 588999999999999997731           2245799


Q ss_pred             HHHHHHHHHhcCCCCCCChhh--HhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHH-HHHHHhCcHHHHHHhc-C
Q 013228          143 RIATWTLSNFCAGKPKPIFDQ--VRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEI-QAVIEAGVCPRLVELL-G  218 (447)
Q Consensus       143 ~~a~~~L~~l~~~~~~~~~~~--~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~-~~~~~~~~~~~L~~lL-~  218 (447)
                      +++..+|.||+..+.......  ..+++..++..|.+..+++..-...+|+||+-..+... +.+.+.|-+..|.... .
T Consensus       369 rYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~  448 (2195)
T KOG2122|consen  369 RYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALR  448 (2195)
T ss_pred             HHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHH
Confidence            999999999999883332222  37999999999999888999999999999996655444 4455568888887764 5


Q ss_pred             CCCchhHhHHHHHHHHhhcCChhhHHHHHh-cCChHHHHHhhccCC---chhHHHHHHHHHHHHhc---CCHHHHHHHHH
Q 013228          219 HPSPSVLTRALQTVVNIAAGDDFQTQCIIN-CGALPYLLGLLIHNH---KKSIKTDACWTISNITA---GNSEHIQAVID  291 (447)
Q Consensus       219 ~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~l~~l~~~l~~~~---~~~v~~~a~~~l~nl~~---~~~~~~~~l~~  291 (447)
                      ..++...+..+.+||||+.++.+....|.. .|.+.+|+.+|....   ...+...+.++|.|+..   ..+++++.+.+
T Consensus       449 ~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~  528 (2195)
T KOG2122|consen  449 NKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRR  528 (2195)
T ss_pred             hcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHH
Confidence            567788899999999999877666555544 588999999997431   45677888889988876   46678888899


Q ss_pred             cCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 013228          292 AGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVG  367 (447)
Q Consensus       292 ~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~  367 (447)
                      ++.+..|+..|++....+..++|.+|+||+.. +++..+.|++.|.+..|..++++.+..+.+-+..+|.|++...
T Consensus       529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR-~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-SPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             hhHHHHHHHHhhhcceEEeecchhhhhhhhcC-CHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence            99999999999999999999999999999987 6777899999999999999999999999999999999999765

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.79  E-value=2.6e-17  Score=143.21  Aligned_cols=358  Identities=15%  Similarity=0.134  Sum_probs=261.8

Q ss_pred             ccCCCHHHHHHHHHHHHHHHccC--CCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCC
Q 013228            5 VWSDDNNMQLEATTHIRKLLSNA--RSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHG   82 (447)
Q Consensus         5 l~s~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~   82 (447)
                      +...+..+...+..++...+..+  ++...+..+.++.++.|.+..++++ .++-.+++++|+|+|.++.+.|..+.+.|
T Consensus        51 i~~~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lg  129 (604)
T KOG4500|consen   51 IMTASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLG  129 (604)
T ss_pred             eeeccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcC
Confidence            33445567777788888877542  0112334466788899999999997 89999999999999999999999999999


Q ss_pred             ChHHHHHhhCC----C---CHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhc-cccchhHHHHHHHHHHHhcC
Q 013228           83 AVPIFVKLLAS----P---SDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLN-KHAKLSMLRIATWTLSNFCA  154 (447)
Q Consensus        83 ~i~~L~~ll~~----~---~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~-~~~~~~~~~~a~~~L~~l~~  154 (447)
                      +-..++..|+.    +   +.+....+...|.|...++.+.+..+.+.|+++.+...+- ...+...-+.......++.+
T Consensus       130 Gaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls  209 (604)
T KOG4500|consen  130 GAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLS  209 (604)
T ss_pred             CceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHH
Confidence            97777777764    2   3467778888999999999999999999999998888773 23343444444444333332


Q ss_pred             CCCC--CChhhHhhhHHHHHHhhccC-ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-CCch-------
Q 013228          155 GKPK--PIFDQVRPALPALAQLVHSN-DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH-PSPS-------  223 (447)
Q Consensus       155 ~~~~--~~~~~~~~~l~~l~~ll~~~-~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~~~-------  223 (447)
                      -...  ........+.-.+++++.+. .+.+.+-+...+...++++.-. -.+.+.|.+..++.+++. +...       
T Consensus       210 ~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vk-l~la~~gl~e~~~~lv~~~k~~t~k~d~~~  288 (604)
T KOG4500|consen  210 FVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVK-LSLAQNGLLEDSIDLVRNMKDFTKKTDMLN  288 (604)
T ss_pred             HHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCccee-eehhhcchHHHHHHHHHhcccccchHHHHH
Confidence            2101  11122244455566666543 5667777788888888765543 347788999999888865 2221       


Q ss_pred             hHhHHHHHHHHhhcCChhhHHHHHhcC-ChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH
Q 013228          224 VLTRALQTVVNIAAGDDFQTQCIINCG-ALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLL  302 (447)
Q Consensus       224 v~~~a~~~l~~l~~~~~~~~~~~~~~~-~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l  302 (447)
                      ....++....-+..+++.- +.+...+ +++.+..++.+. +......+..+++|+++.+ +.+.++++.+++..|++++
T Consensus       289 l~k~~~el~vllltGDeSM-q~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D-~~ci~~v~~~~~nkL~~~l  365 (604)
T KOG4500|consen  289 LFKRIAELDVLLLTGDESM-QKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRD-DICIQLVQKDFLNKLISCL  365 (604)
T ss_pred             HHHhhhhHhhhhhcCchHH-HHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHH
Confidence            2233444444445555543 4455544 889999999999 9999999999999998875 6677899999999999998


Q ss_pred             hc-----CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 013228          303 QN-----AEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEA  369 (447)
Q Consensus       303 ~~-----~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~  369 (447)
                      ..     ++.+++..++.+|+|+....  .+...+...|+.+.+..+++...|.+...-++.++-+....+.
T Consensus       366 ~~~~~vdgnV~~qhA~lsALRnl~IPv--~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~  435 (604)
T KOG4500|consen  366 MQEKDVDGNVERQHACLSALRNLMIPV--SNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEY  435 (604)
T ss_pred             HHhcCCCccchhHHHHHHHHHhccccC--CchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHH
Confidence            74     46778889999999999853  4567788999999999999999999998888888887765543

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.75  E-value=5.4e-15  Score=124.92  Aligned_cols=319  Identities=17%  Similarity=0.211  Sum_probs=251.7

Q ss_pred             ccCCHHHHHHhh---cCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhc
Q 013228           37 PFGVVPRFVEFL---MREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLAS--PSDDIREQAVCALGNVAA  111 (447)
Q Consensus        37 ~~~~v~~L~~ll---~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~i~~~a~~~L~~l~~  111 (447)
                      ..|..+.++.++   .+++ ..+...++.+|..+..+.|+    +.+..++..++.+|..  .+.++-...+..+..-|.
T Consensus       102 ~~ga~~~~it~~~la~~~~-~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~  176 (461)
T KOG4199|consen  102 KNGAHDALITLLELAESPN-ESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACI  176 (461)
T ss_pred             cCCCcchhhhHHHHhhCCc-hhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence            456666666554   3455 67888999999998886665    5567889999998865  577888888888988888


Q ss_pred             CChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCC-Chh---------hHhhhHHHHHHhhccC-Ch
Q 013228          112 DSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKP-IFD---------QVRPALPALAQLVHSN-DK  180 (447)
Q Consensus       112 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~---------~~~~~l~~l~~ll~~~-~~  180 (447)
                      ..+..|+.+++.++++.+.+.|.......+.+.++|++..+..++..+ .+.         .-.+++..|+..++-. +|
T Consensus       177 ~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp  256 (461)
T KOG4199|consen  177 MHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDP  256 (461)
T ss_pred             HhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCc
Confidence            888899999999999999988865555579999999999998776211 111         1145677788887744 78


Q ss_pred             hHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-CCch---hHhHHHHHHHHhhcCChhhHHHHHhcCChHHHH
Q 013228          181 EVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH-PSPS---VLTRALQTVVNIAAGDDFQTQCIINCGALPYLL  256 (447)
Q Consensus       181 ~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~~~---v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~  256 (447)
                      .+...++.+|..++..+ +..+.+.+.|++..+++++.+ ++..   ..+.++..|..++. ++.....+++.|+.+.++
T Consensus       257 ~~L~~l~~tl~~lAVr~-E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii  334 (461)
T KOG4199|consen  257 DSLVSLSTTLKALAVRD-EICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKII  334 (461)
T ss_pred             cHHHHHHHHHHHHHHHH-HHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHH
Confidence            89999999999999654 456789999999999999977 3333   34667788877775 555778899999999999


Q ss_pred             Hhhc-cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc-C-chhHHHHHHHHHHHhcCCCCHHHHHHHH
Q 013228          257 GLLI-HNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQN-A-EFDIKNWAARAISNATFGGTHEQIKYLV  333 (447)
Q Consensus       257 ~~l~-~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~-~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~  333 (447)
                      .++. +..++.+..+++.+++-++...|++...+++.|+-...+..++. + ...++++|++++.|+... +.+++..++
T Consensus       335 ~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r-s~~~~~~~l  413 (461)
T KOG4199|consen  335 TLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR-SAENRTILL  413 (461)
T ss_pred             HHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh-hhhccchHH
Confidence            8774 44489999999999999999999999999999999999998883 2 578999999999999987 456667766


Q ss_pred             HcCChHHHHhhccCCCHHHHHHHHHHHHHHH
Q 013228          334 REGCIKPLCDLLLCADPEIVTVFLKGLEKIL  364 (447)
Q Consensus       334 ~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~  364 (447)
                      ..| ++.|+..-...++.....+-.+|..|-
T Consensus       414 ~~G-iE~Li~~A~~~h~tce~~akaALRDLG  443 (461)
T KOG4199|consen  414 ANG-IEKLIRTAKANHETCEAAAKAALRDLG  443 (461)
T ss_pred             hcc-HHHHHHHHHhcCccHHHHHHHHHHhcC
Confidence            655 888888888888877777777777663

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=2.5e-15  Score=132.78  Aligned_cols=375  Identities=18%  Similarity=0.151  Sum_probs=283.8

Q ss_pred             HHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHh
Q 013228           11 NMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKL   90 (447)
Q Consensus        11 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l   90 (447)
                      .+...|+..|.+++..  -..-..+.+.+++..|++.|..++ .++.......|..++- ..+++..+.+.|+++.|+++
T Consensus       278 qLLrva~ylLlNlAed--~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~kl  353 (791)
T KOG1222|consen  278 QLLRVAVYLLLNLAED--ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLLKL  353 (791)
T ss_pred             HHHHHHHHHHHHHhhh--hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHHHh
Confidence            4455677778888865  445566788899999999999999 7999999999999988 67889999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHH
Q 013228           91 LASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPA  170 (447)
Q Consensus        91 l~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~  170 (447)
                      ....+++++...+..+.|++.++. .+..+...|.+|.+..++.++.   -..-|+..++.++.++..........+++.
T Consensus       354 fp~~h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d~---~~~iA~~~lYh~S~dD~~K~MfayTdci~~  429 (791)
T KOG1222|consen  354 FPIQHPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSDT---KHGIALNMLYHLSCDDDAKAMFAYTDCIKL  429 (791)
T ss_pred             cCCCCHHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCcc---cchhhhhhhhhhccCcHHHHHHHHHHHHHH
Confidence            999999999999999999998876 5667778899999999994332   234467788888887655555556889998


Q ss_pred             HHHhh-ccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhc-CCCCchhHhHHHHHHHHhhcCChhhHHHHHh
Q 013228          171 LAQLV-HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELL-GHPSPSVLTRALQTVVNIAAGDDFQTQCIIN  248 (447)
Q Consensus       171 l~~ll-~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~  248 (447)
                      +++.+ ...+.++-...+....|++-+..+ .+.+.+..++..|+..- +..+. .   ....+.|++.+.......+++
T Consensus       430 lmk~v~~~~~~~vdl~lia~ciNl~lnkRN-aQlvceGqgL~~LM~ra~k~~D~-l---LmK~vRniSqHeg~tqn~Fid  504 (791)
T KOG1222|consen  430 LMKDVLSGTGSEVDLALIALCINLCLNKRN-AQLVCEGQGLDLLMERAIKSRDL-L---LMKVVRNISQHEGATQNMFID  504 (791)
T ss_pred             HHHHHHhcCCceecHHHHHHHHHHHhcccc-ceEEecCcchHHHHHHHhcccch-H---HHHHHHHhhhccchHHHHHHH
Confidence            88764 455667766666666677754432 34566677777777664 33333 2   345666777766555555665


Q ss_pred             cCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--chhHHHHHHHHHHHhcCCCCH
Q 013228          249 CGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNA--EFDIKNWAARAISNATFGGTH  326 (447)
Q Consensus       249 ~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~--~~~v~~~a~~aL~~l~~~~~~  326 (447)
                        .+.-|..+++...+.....++.++++|+...+-+-.+.+.+...+|.+-..|..+  ..++......+++.++.  +.
T Consensus       505 --yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~--d~  580 (791)
T KOG1222|consen  505 --YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR--DL  580 (791)
T ss_pred             --HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh--hh
Confidence              6677777777665777888899999999876555555566788999999999854  46788888889999988  44


Q ss_pred             HHHHHHHHcCChHHHHhhccC--CCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCC
Q 013228          327 EQIKYLVREGCIKPLCDLLLC--ADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDN  404 (447)
Q Consensus       327 ~~~~~l~~~~~l~~L~~ll~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~  404 (447)
                      .....+...|+++.++++|..  .|.+++...+..+..+++.....             .-.+++...-..+..|+++.|
T Consensus       581 ~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr-------------~~miket~~~AylIDLMHDkN  647 (791)
T KOG1222|consen  581 DCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTR-------------RLMIKETALGAYLIDLMHDKN  647 (791)
T ss_pred             HHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHH-------------HHHHhhccchHHHHHHHhccc
Confidence            667777889999999999986  46678888888888888763321             445667777788999999999


Q ss_pred             HHHHHHHHHHH
Q 013228          405 DEIHEKSVKIL  415 (447)
Q Consensus       405 ~~v~~~a~~~l  415 (447)
                      .++++.+...+
T Consensus       648 ~eiRkVCDn~L  658 (791)
T KOG1222|consen  648 AEIRKVCDNAL  658 (791)
T ss_pred             HHHHHHHHHHH
Confidence            98876555444

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.72  E-value=9.7e-15  Score=127.38  Aligned_cols=399  Identities=12%  Similarity=0.060  Sum_probs=285.7

Q ss_pred             cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCC---C---CHHHHHHHHHHHHHHcCCChhhH
Q 013228            2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMRE---D---YPQLQFEAAWALKNIVSGTSEDT   75 (447)
Q Consensus         2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~---~---~~~v~~~a~~~L~~l~~~~~~~~   75 (447)
                      .+..+|++.++..+..++|.+++..+ .+.+..+.+.|+-..++..|+.-   +   +.+....++..|.|..-++.+.+
T Consensus        93 rq~psS~d~ev~~Q~~RaLgNiCydn-~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~  171 (604)
T KOG4500|consen   93 RQTPSSPDTEVHEQCFRALGNICYDN-NENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELR  171 (604)
T ss_pred             HhCCCCCcccHHHHHHHHHhhhhccC-chhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHH
Confidence            34567888999999999999999876 88899999999977777777542   2   24666777889999999999999


Q ss_pred             HHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCC-hhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHh
Q 013228           76 KVVIDHGAVPIFVKLLAS--PSDDIREQAVCALGNVAADS-ARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNF  152 (447)
Q Consensus        76 ~~~~~~~~i~~L~~ll~~--~~~~i~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l  152 (447)
                      ..+.+.|+++.|...+.-  .+....+.......|+.+-- +...+...+......+++++.....++..+.+...+...
T Consensus       172 aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~  251 (604)
T KOG4500|consen  172 AQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKA  251 (604)
T ss_pred             HHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHH
Confidence            999999999999988754  56667677766666665322 223445556667778888887777788888899999999


Q ss_pred             cCCCCCCChhhHhhhHHHHHHhhcc-CCh-------hHHHHHHHHHHHhccCCcHHHHHHHHhC-cHHHHHHhcCCCCch
Q 013228          153 CAGKPKPIFDQVRPALPALAQLVHS-NDK-------EVMTDACRALFYLSEGTNDEIQAVIEAG-VCPRLVELLGHPSPS  223 (447)
Q Consensus       153 ~~~~~~~~~~~~~~~l~~l~~ll~~-~~~-------~v~~~al~~l~~l~~~~~~~~~~~~~~~-~~~~L~~lL~~~~~~  223 (447)
                      +.++.-.-.....|.+..++.+++. .+.       .....++....-+..+++ ..+.+...+ +++.+...+.+++..
T Consensus       252 aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDe-SMq~L~~~p~~l~~~~sw~~S~d~~  330 (604)
T KOG4500|consen  252 AENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDE-SMQKLHADPQFLDFLESWFRSDDSN  330 (604)
T ss_pred             hcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCch-HHHHHhcCcHHHHHHHHHhcCCchh
Confidence            9887444334446777778887775 222       222333333333444443 345566665 899999999999999


Q ss_pred             hHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccC----CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHH
Q 013228          224 VLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHN----HKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLV  299 (447)
Q Consensus       224 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~----~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~  299 (447)
                      ....+..+++|+++.+. .+..+++.+++..|+.++...    .+-+++..++.+|.|+.-.- .+...++..|+.+.++
T Consensus       331 l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv-~nka~~~~aGvteaIL  408 (604)
T KOG4500|consen  331 LITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV-SNKAHFAPAGVTEAIL  408 (604)
T ss_pred             HHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC-CchhhccccchHHHHH
Confidence            99999999999999766 445688889999999998541    15677888999999997743 4466888999999999


Q ss_pred             HHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHH-HcCChHHHHhhccCCCH-HHHHHHHHHHHHHHHhhhhhhhhhhhc
Q 013228          300 NLLQNAEFDIKNWAARAISNATFGGTHEQIKYLV-REGCIKPLCDLLLCADP-EIVTVFLKGLEKILKVGEAEKNMDIAI  377 (447)
Q Consensus       300 ~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~-~~~~l~~L~~ll~~~~~-~~~~~a~~~l~~l~~~~~~~~~~~~~~  377 (447)
                      .+++...|++...-...++-+.... +.....+. +...++.|+.--+++|- .+.-.....+.-+++..-..+      
T Consensus       409 ~~lk~~~ppv~fkllgTlrM~~d~q-e~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kd------  481 (604)
T KOG4500|consen  409 LQLKLASPPVTFKLLGTLRMIRDSQ-EYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKD------  481 (604)
T ss_pred             HHHHhcCCcchHHHHHHHHHHHhch-HHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhh------
Confidence            9999999999998888887665432 21222222 23446666666666654 355555566666666532211      


Q ss_pred             ccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHH
Q 013228          378 GDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILE  416 (447)
Q Consensus       378 ~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~  416 (447)
                           ..-.+-+.||++....+....+-..+..|.-.+.
T Consensus       482 -----v~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~  515 (604)
T KOG4500|consen  482 -----VILTVPKSGGIKEKVSMFTKNHINMQNEALVALL  515 (604)
T ss_pred             -----hHhhccccccHHHHHHHHHHhhHHHhHHHHHHHH
Confidence                 3455566888888888877776666666655443

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=2.6e-14  Score=126.47  Aligned_cols=384  Identities=15%  Similarity=0.123  Sum_probs=285.5

Q ss_pred             CcccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228            1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID   80 (447)
Q Consensus         1 lv~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (447)
                      +|+.|.-++.++.......|.+++..  .++...+.+.|++..|++++.... ++++..++..+.|++. +...+..++.
T Consensus       309 LVKaLdr~n~~Ll~lv~~FLkKLSIf--~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSF-D~glr~KMv~  384 (791)
T KOG1222|consen  309 LVKALDRSNSSLLTLVIKFLKKLSIF--DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSF-DSGLRPKMVN  384 (791)
T ss_pred             HHHHHcccchHHHHHHHHHHHHhhhh--ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhccc-cccccHHHhh
Confidence            35667777788888888888888776  677888999999999999999999 9999999999999999 6789999999


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCC
Q 013228           81 HGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPI  160 (447)
Q Consensus        81 ~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~  160 (447)
                      .|.+|.+..++.+.  .-...|+..+..++.++. .+..+....+++.++..+....+.++-........|+|.+..+.+
T Consensus       385 ~GllP~l~~ll~~d--~~~~iA~~~lYh~S~dD~-~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQ  461 (791)
T KOG1222|consen  385 GGLLPHLASLLDSD--TKHGIALNMLYHLSCDDD-AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQ  461 (791)
T ss_pred             ccchHHHHHHhCCc--ccchhhhhhhhhhccCcH-HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccce
Confidence            99999999999763  334456777777876655 677888888999999988788888887777777788888765555


Q ss_pred             hhhHhhhHHHHHHh-hccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcC-CCCchhHhHHHHHHHHhhcC
Q 013228          161 FDQVRPALPALAQL-VHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLG-HPSPSVLTRALQTVVNIAAG  238 (447)
Q Consensus       161 ~~~~~~~l~~l~~l-l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~v~~~a~~~l~~l~~~  238 (447)
                      .......+..|+.. ++..|+-+    ...++|++.+.......+++.  +..|...++ +.++.....++.+++|+...
T Consensus       462 lvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fidy--vgdLa~i~~nd~~E~F~~EClGtlanL~v~  535 (791)
T KOG1222|consen  462 LVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFIDY--VGDLAGIAKNDNSESFGLECLGTLANLKVT  535 (791)
T ss_pred             EEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHHHH--HHHHHHHhhcCchHHHHHHHHHHHhhcccC
Confidence            54445566666654 56656543    457788888776544445543  555666664 45677888899999999876


Q ss_pred             ChhhHHHHHhcCChHHHHHhhccCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc--CchhHHHHHHH
Q 013228          239 DDFQTQCIINCGALPYLLGLLIHNH-KKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQN--AEFDIKNWAAR  315 (447)
Q Consensus       239 ~~~~~~~~~~~~~l~~l~~~l~~~~-~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~--~~~~v~~~a~~  315 (447)
                      .-.....+-..+.+|.+-..|..+. ..++.-..+-+++.++.. ......+...++++.++++|+.  .|.+.......
T Consensus       536 dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~Qiiy  614 (791)
T KOG1222|consen  536 DLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIY  614 (791)
T ss_pred             CCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHHHhCccccHHHHHHHHHhhcccchHHHHHHH
Confidence            6667777777899999999887542 345666777777777654 3555566688999999999994  47777778888


Q ss_pred             HHHHhcCCCCHHHHHHHH-HcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHH
Q 013228          316 AISNATFGGTHEQIKYLV-REGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLE  394 (447)
Q Consensus       316 aL~~l~~~~~~~~~~~l~-~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  394 (447)
                      ++..+...  ...+..++ +...-..++.++++.+.+++..|-.+|.-+...+....+...    .  -......+.+++
T Consensus       615 VF~Q~l~H--e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWAKrI~----~--EkFrwHNsQWLe  686 (791)
T KOG1222|consen  615 VFLQFLKH--ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWAKRIA----G--EKFRWHNSQWLE  686 (791)
T ss_pred             HHHHHHHH--HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHHHHHh----h--hhcccchhHHHH
Confidence            88888775  23344444 345566799999999999999999999999888776543311    0  012233566777


Q ss_pred             HHHHHhcCCCHH
Q 013228          395 KIENLRSHDNDE  406 (447)
Q Consensus       395 ~l~~l~~~~~~~  406 (447)
                      .++.-+.++++.
T Consensus       687 MVEs~q~ddsEq  698 (791)
T KOG1222|consen  687 MVESQQRDDSEQ  698 (791)
T ss_pred             HHHHhhccchhh
Confidence            777666555544

>PRK09687 putative lyase; Provisional

Probab=99.71  E-value=2.6e-15  Score=131.27  Aligned_cols=256  Identities=13%  Similarity=0.118  Sum_probs=203.0

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHH
Q 013228           39 GVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRD  118 (447)
Q Consensus        39 ~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~  118 (447)
                      --++.|..+|.+++ ..++..++++|..+-.           ..+++.+..++.++++.+|..++++|+.+......   
T Consensus        23 ~~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---   87 (280)
T PRK09687         23 LNDDELFRLLDDHN-SLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---   87 (280)
T ss_pred             ccHHHHHHHHhCCC-HHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---
Confidence            35788999999999 8999999999998764           23567888889999999999999999998643211   


Q ss_pred             HHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCc
Q 013228          119 LVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTN  198 (447)
Q Consensus       119 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~  198 (447)
                         ....++.|..++.++++..++..++.+|.+++......    ...+++.+...+.++++.|+..++++|+.+..   
T Consensus        88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~---  157 (280)
T PRK09687         88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND---  157 (280)
T ss_pred             ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC---
Confidence               11246677777668889999999999999997544222    23456667788888999999999999976641   


Q ss_pred             HHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHH
Q 013228          199 DEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNI  278 (447)
Q Consensus       199 ~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl  278 (447)
                      .        ..++.|+.+|.++++.+|..|+.+|+.+...++         ..++.|+..+.+. +..||..|+++|+.+
T Consensus       158 ~--------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~  219 (280)
T PRK09687        158 E--------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLALR  219 (280)
T ss_pred             H--------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHcc
Confidence            1        257899999999999999999999999843333         3456789999988 999999999999996


Q ss_pred             hcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcc-CCCHHHHHHHH
Q 013228          279 TAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLL-CADPEIVTVFL  357 (447)
Q Consensus       279 ~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~~~~~a~  357 (447)
                      -  ++.         .+|.|++.+.+++  ++..++.+|+++...            ..++.|.++++ +.|+.++..+.
T Consensus       220 ~--~~~---------av~~Li~~L~~~~--~~~~a~~ALg~ig~~------------~a~p~L~~l~~~~~d~~v~~~a~  274 (280)
T PRK09687        220 K--DKR---------VLSVLIKELKKGT--VGDLIIEAAGELGDK------------TLLPVLDTLLYKFDDNEIITKAI  274 (280)
T ss_pred             C--Chh---------HHHHHHHHHcCCc--hHHHHHHHHHhcCCH------------hHHHHHHHHHhhCCChhHHHHHH
Confidence            2  232         7888999998755  778899999998652            15888888886 78899999998


Q ss_pred             HHHHH
Q 013228          358 KGLEK  362 (447)
Q Consensus       358 ~~l~~  362 (447)
                      ++|..
T Consensus       275 ~a~~~  279 (280)
T PRK09687        275 DKLKR  279 (280)
T ss_pred             HHHhc
Confidence            88764

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=7.2e-14  Score=136.41  Aligned_cols=356  Identities=16%  Similarity=0.124  Sum_probs=252.4

Q ss_pred             cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh---hhHHHH
Q 013228            2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTS---EDTKVV   78 (447)
Q Consensus         2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~---~~~~~~   78 (447)
                      ++..+|+++..|..|+..|..+...-+......+-  .+.+.+.+.+.+++. .||..|+++++.++...+   ..+..+
T Consensus       124 ~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~--~l~~lf~q~~~d~s~-~vr~~a~rA~~a~~~~~~~~~~~~~~~  200 (1075)
T KOG2171|consen  124 FQSTKSPNPSLRESALLILSSLPETFGNTLQPHLD--DLLRLFSQTMTDPSS-PVRVAAVRALGAFAEYLENNKSEVDKF  200 (1075)
T ss_pred             HHHhcCCCcchhHHHHHHHHhhhhhhccccchhHH--HHHHHHHHhccCCcc-hHHHHHHHHHHHHHHHhccchHHHHHH
Confidence            45678999999999999999987653222222111  256777788888884 499999999999887443   333333


Q ss_pred             HhCCChHHHHHhh----CCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhc-cccchhHHHHHHHHHHHhc
Q 013228           79 IDHGAVPIFVKLL----ASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLN-KHAKLSMLRIATWTLSNFC  153 (447)
Q Consensus        79 ~~~~~i~~L~~ll----~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~-~~~~~~~~~~a~~~L~~l~  153 (447)
                      .  ..+|.++..+    ..++......++.+|..+....+.+-..... .++...+.... +.-+..+|..|+.++..++
T Consensus       201 ~--~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~  277 (1075)
T KOG2171|consen  201 R--DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLALEFLVSLS  277 (1075)
T ss_pred             H--HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHHHHHHHHH
Confidence            3  2455555544    4467777889999999998776654332221 13444444443 2347789999999999999


Q ss_pred             CCCCCCCh---hhHhhhHHHHHHhhccC--C--------------hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHH
Q 013228          154 AGKPKPIF---DQVRPALPALAQLVHSN--D--------------KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLV  214 (447)
Q Consensus       154 ~~~~~~~~---~~~~~~l~~l~~ll~~~--~--------------~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~  214 (447)
                      +..|....   .....+++.++.++...  |              ..--..|..++-.++.+-+...   +-.-+++.+-
T Consensus       278 e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~---v~p~~~~~l~  354 (1075)
T KOG2171|consen  278 EYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQ---VLPPLFEALE  354 (1075)
T ss_pred             HhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhh---ehHHHHHHHH
Confidence            87532221   23356777777766521  1              1123446677777775544321   1123567777


Q ss_pred             HhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 013228          215 ELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGL  294 (447)
Q Consensus       215 ~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~  294 (447)
                      .++.+.++.-|..++.+|+.++.+........++ .+++.++..|.++ ++.||..|+.+++.++.+-...++.-...-+
T Consensus       355 ~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~iqk~~~e~l  432 (1075)
T KOG2171|consen  355 AMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDP-HPRVRYAALNAIGQMSTDLQPEIQKKHHERL  432 (1075)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCC-CHHHHHHHHHHHHhhhhhhcHHHHHHHHHhc
Confidence            8889999999999999999999999877665544 6889999999999 9999999999999998865555666666668


Q ss_pred             hHHHHHHHhcC-chhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChH-HHHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 013228          295 IGPLVNLLQNA-EFDIKNWAARAISNATFGGTHEQIKYLVREGCIK-PLCDLLLCADPEIVTVFLKGLEKILKVGEA  369 (447)
Q Consensus       295 ~~~L~~~l~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~-~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~  369 (447)
                      .+.|+..+.+. ++.++..|+.++.|++....++......+ ++++ .+..++.++.+.+++.++.+|.......+.
T Consensus       433 ~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd-~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~  508 (1075)
T KOG2171|consen  433 PPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD-GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQE  508 (1075)
T ss_pred             cHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Confidence            88999998864 78999999999999999877666554333 4555 455566778889999999999999876554

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.69  E-value=5.2e-14  Score=129.34  Aligned_cols=402  Identities=16%  Similarity=0.108  Sum_probs=274.3

Q ss_pred             cccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHcCCChhhHHHHHhCC
Q 013228            4 GVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMRED-YPQLQFEAAWALKNIVSGTSEDTKVVIDHG   82 (447)
Q Consensus         4 ~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~   82 (447)
                      .+.+.+++....|.....+.+.+. +++...+++.|.++.|+.+++..+ .++.+.+.+-++.....+.......+.+.+
T Consensus        17 ~L~~~dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~   95 (678)
T KOG1293|consen   17 RLLHLDPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRII   95 (678)
T ss_pred             hhhcCCHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHh
Confidence            456778888999999999999886 555567999999999999997665 267777888888888888888899999999


Q ss_pred             ChHHHHHhhCCCC-HHHHHHHHHHHHHhhcCChhHHH--HHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCC
Q 013228           83 AVPIFVKLLASPS-DDIREQAVCALGNVAADSARCRD--LVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKP  159 (447)
Q Consensus        83 ~i~~L~~ll~~~~-~~i~~~a~~~L~~l~~~~~~~~~--~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~  159 (447)
                      .++.|++++.+++ ..++..+++++.++-..++....  ......+++.+..++ ..+.....+.-+....+++......
T Consensus        96 ~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~-s~~lk~~~~l~~~~~a~~s~~~~hq  174 (678)
T KOG1293|consen   96 ELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLY-SIELKYISRLDVSRAAHLSSTKDHQ  174 (678)
T ss_pred             hHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH-hhhhhhhhhhhhhhhccccccchhh
Confidence            9999999999988 89999999999999866542211  111222333333333 3344445555555566666554333


Q ss_pred             ChhhHhhhHHHHHHhhccCChhHHHHHHHHHH---HhccCCcHHHHH----HHHhCcHH--HHHHhcCCCCchhHhHHHH
Q 013228          160 IFDQVRPALPALAQLVHSNDKEVMTDACRALF---YLSEGTNDEIQA----VIEAGVCP--RLVELLGHPSPSVLTRALQ  230 (447)
Q Consensus       160 ~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~---~l~~~~~~~~~~----~~~~~~~~--~L~~lL~~~~~~v~~~a~~  230 (447)
                      ......++.+.+.-++.......+..++.+++   ++..+++.....    ..+.|+.+  .+.+++.+++...+..++.
T Consensus       175 ~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~  254 (678)
T KOG1293|consen  175 LILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLE  254 (678)
T ss_pred             heeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHH
Confidence            33344677777777777778899999999999   777666543322    33446655  4666677777777777777


Q ss_pred             HHHHhhcCChhh-------------HHH--------------------------------------HHhcCChHHHHHhh
Q 013228          231 TVVNIAAGDDFQ-------------TQC--------------------------------------IINCGALPYLLGLL  259 (447)
Q Consensus       231 ~l~~l~~~~~~~-------------~~~--------------------------------------~~~~~~l~~l~~~l  259 (447)
                      ++..+...+...             ...                                      ..+....+...+++
T Consensus       255 cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ell  334 (678)
T KOG1293|consen  255 CLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELL  334 (678)
T ss_pred             HHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHH
Confidence            777665443000             000                                      00011111111111


Q ss_pred             ----------------------------------------------------ccCCchhHHHHHHHHHHHHhcCCHHHHH
Q 013228          260 ----------------------------------------------------IHNHKKSIKTDACWTISNITAGNSEHIQ  287 (447)
Q Consensus       260 ----------------------------------------------------~~~~~~~v~~~a~~~l~nl~~~~~~~~~  287 (447)
                                                                          ... +...+..|+.++.++++.-.....
T Consensus       335 f~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~k-d~~~~aaa~l~~~s~srsV~aL~t  413 (678)
T KOG1293|consen  335 FICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIK-DHDFVAAALLCLKSFSRSVSALRT  413 (678)
T ss_pred             HHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccc-cHHHHHHHHHHHHHHHHHHHHHHc
Confidence                                                                011 333344444444444332111111


Q ss_pred             HHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 013228          288 AVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVG  367 (447)
Q Consensus       288 ~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~  367 (447)
                      .+-...+...|+.++..++..++..+..+|+|+...-+ +....+++.|+++.+.+++.+.++.++..++|+|++++-.+
T Consensus       414 g~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs-~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~  492 (678)
T KOG1293|consen  414 GLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS-NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNC  492 (678)
T ss_pred             CCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc-cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcc
Confidence            12245678899999999999999999999999987533 45677899999999999999999999999999999998765


Q ss_pred             hhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 013228          368 EAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWCG  421 (447)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  421 (447)
                      ....            ...+..-=+...+..+.++++..|++.+-.+++++..+
T Consensus       493 de~~------------k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~  534 (678)
T KOG1293|consen  493 DEEE------------KFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN  534 (678)
T ss_pred             hHHH------------HHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence            5432            22222222346677889999999999999999998765

>PRK09687 putative lyase; Provisional

Probab=99.67  E-value=3e-14  Score=124.58  Aligned_cols=255  Identities=15%  Similarity=0.094  Sum_probs=197.0

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCCh
Q 013228           82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIF  161 (447)
Q Consensus        82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~  161 (447)
                      --++.|..+|.+++..+|..++++|..+...           .+++.+..++ .+.++.++..++++|+.+-.....   
T Consensus        23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~-----------~~~~~l~~ll-~~~d~~vR~~A~~aLg~lg~~~~~---   87 (280)
T PRK09687         23 LNDDELFRLLDDHNSLKRISSIRVLQLRGGQ-----------DVFRLAIELC-SSKNPIERDIGADILSQLGMAKRC---   87 (280)
T ss_pred             ccHHHHHHHHhCCCHHHHHHHHHHHHhcCcc-----------hHHHHHHHHH-hCCCHHHHHHHHHHHHhcCCCccc---
Confidence            4578899999999999999999999987421           2356666766 788999999999999998653211   


Q ss_pred             hhHhhhHHHHHHh-hccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCCh
Q 013228          162 DQVRPALPALAQL-VHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD  240 (447)
Q Consensus       162 ~~~~~~l~~l~~l-l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~  240 (447)
                        ....++.|..+ ++++++.|+..++.+|+++.......     ....++.+...+.++++.||..++++|+.+..  +
T Consensus        88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--~  158 (280)
T PRK09687         88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--E  158 (280)
T ss_pred             --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--H
Confidence              34567888876 67889999999999999986433211     11245667788888999999999999976531  1


Q ss_pred             hhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHh
Q 013228          241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNA  320 (447)
Q Consensus       241 ~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l  320 (447)
                               ..++.|+.++.++ ++.+|..|+++|+.+...++.         .++.|+..+.+.++.||..|+++|+.+
T Consensus       159 ---------~ai~~L~~~L~d~-~~~VR~~A~~aLg~~~~~~~~---------~~~~L~~~L~D~~~~VR~~A~~aLg~~  219 (280)
T PRK09687        159 ---------AAIPLLINLLKDP-NGDVRNWAAFALNSNKYDNPD---------IREAFVAMLQDKNEEIRIEAIIGLALR  219 (280)
T ss_pred             ---------HHHHHHHHHhcCC-CHHHHHHHHHHHhcCCCCCHH---------HHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence                     3677899999998 999999999999999544543         677789999999999999999999986


Q ss_pred             cCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHh
Q 013228          321 TFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLR  400 (447)
Q Consensus       321 ~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~  400 (447)
                      -.   +         .+++.|+..+.+++  ++..++.+|..+-.                        ...++.|.+++
T Consensus       220 ~~---~---------~av~~Li~~L~~~~--~~~~a~~ALg~ig~------------------------~~a~p~L~~l~  261 (280)
T PRK09687        220 KD---K---------RVLSVLIKELKKGT--VGDLIIEAAGELGD------------------------KTLLPVLDTLL  261 (280)
T ss_pred             CC---h---------hHHHHHHHHHcCCc--hHHHHHHHHHhcCC------------------------HhHHHHHHHHH
Confidence            43   2         26888899998876  45566666666532                        23467777887


Q ss_pred             c-CCCHHHHHHHHHHHHH
Q 013228          401 S-HDNDEIHEKSVKILET  417 (447)
Q Consensus       401 ~-~~~~~v~~~a~~~l~~  417 (447)
                      + ++++.+..+|.+.+++
T Consensus       262 ~~~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        262 YKFDDNEIITKAIDKLKR  279 (280)
T ss_pred             hhCCChhHHHHHHHHHhc
Confidence            5 8899999999998864

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.65  E-value=4.6e-14  Score=120.41  Aligned_cols=197  Identities=19%  Similarity=0.263  Sum_probs=164.9

Q ss_pred             hhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh
Q 013228           35 VIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSA  114 (447)
Q Consensus        35 ~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~  114 (447)
                      ..+.+-++.|+.+|+...+|.+++.++.++++.+. .+.+++.+.+.|+++.+..++.++++.++..|+++|.|++...+
T Consensus         8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e   86 (254)
T PF04826_consen    8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE   86 (254)
T ss_pred             CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh
Confidence            35667789999999976559999999999999988 88999999999999999999999999999999999999997766


Q ss_pred             hHHHHHHhcCCHHHHHHHhccc-cchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHh
Q 013228          115 RCRDLVLSEEALIPLLTQLNKH-AKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYL  193 (447)
Q Consensus       115 ~~~~~~~~~~~l~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l  193 (447)
                      . +..+..  .++.+++....+ -+..++..++.+|.+++.....  .......+|.+++++.+++..++..++++|.|+
T Consensus        87 n-~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nL  161 (254)
T PF04826_consen   87 N-QEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNL  161 (254)
T ss_pred             h-HHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence            4 444432  477777765443 3788999999999999876522  233466899999999999999999999999999


Q ss_pred             ccCCcHHHHHHHHhCcHHHHHHhcCCC-CchhHhHHHHHHHHhhcC
Q 013228          194 SEGTNDEIQAVIEAGVCPRLVELLGHP-SPSVLTRALQTVVNIAAG  238 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~L~~lL~~~-~~~v~~~a~~~l~~l~~~  238 (447)
                      +.++.. .+.++..+++..++.++... +.++...++..+.|+..+
T Consensus       162 S~np~~-~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  162 SENPDM-TRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN  206 (254)
T ss_pred             ccCHHH-HHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence            976654 56788889999999999774 678899999999999643

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.64  E-value=1.6e-13  Score=117.12  Aligned_cols=238  Identities=19%  Similarity=0.188  Sum_probs=185.8

Q ss_pred             hhhHHHHHHhhcc-CChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhH
Q 013228          165 RPALPALAQLVHS-NDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQT  243 (447)
Q Consensus       165 ~~~l~~l~~ll~~-~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~  243 (447)
                      .+-++.++.+|+. .|+.+++.++.++++.+..+.. ...+.+.|+++.+..++.++++.++..|+.++.|++...+...
T Consensus        11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~n-q~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~   89 (254)
T PF04826_consen   11 AQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFN-QDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQE   89 (254)
T ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhH-HHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHH
Confidence            5677889999985 5899999999999998866544 4678888999999999999999999999999999998665443


Q ss_pred             HHHHhcCChHHHHHhh-ccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcC
Q 013228          244 QCIINCGALPYLLGLL-IHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATF  322 (447)
Q Consensus       244 ~~~~~~~~l~~l~~~l-~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~  322 (447)
                       .+ +. .++.+.+.+ .++.+..++..+..+|.|++..+ +. +.++. +.++.++.++.+++..++..+..+|.|++.
T Consensus        90 -~I-k~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-~~-~~~l~-~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~  163 (254)
T PF04826_consen   90 -QI-KM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-DY-HHMLA-NYIPDLLSLLSSGSEKTKVQVLKVLVNLSE  163 (254)
T ss_pred             -HH-HH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-ch-hhhHH-hhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence             23 32 455555543 44447789999999999997653 22 33332 379999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHcCChHHHHhhccCC-CHHHHHHHHHHHHHHHHhhhhhhhh-hhhcccccHHHHHHHHhc-hHHHHHHH
Q 013228          323 GGTHEQIKYLVREGCIKPLCDLLLCA-DPEIVTVFLKGLEKILKVGEAEKNM-DIAIGDVNQYAQLVEEAE-GLEKIENL  399 (447)
Q Consensus       323 ~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~~~~~a~~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~i~~~~-~~~~l~~l  399 (447)
                        ++...+.++..+++..++.+++.. +.++...++..+.|+-+.-.+.... .......+.+...|.+.+ .-++|..+
T Consensus       164 --np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l  241 (254)
T PF04826_consen  164 --NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQAL  241 (254)
T ss_pred             --CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHH
Confidence              678889999999999999999886 5688888999999996654433111 111234444557777766 67889999


Q ss_pred             hcCCCHHHHHHH
Q 013228          400 RSHDNDEIHEKS  411 (447)
Q Consensus       400 ~~~~~~~v~~~a  411 (447)
                      ..|++++|+.++
T Consensus       242 ~~h~d~ev~~~v  253 (254)
T PF04826_consen  242 ANHPDPEVKEQV  253 (254)
T ss_pred             HcCCCHHHhhhc
Confidence            999999998764

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.63  E-value=2.3e-13  Score=139.14  Aligned_cols=269  Identities=18%  Similarity=0.194  Sum_probs=207.2

Q ss_pred             cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228            2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH   81 (447)
Q Consensus         2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (447)
                      ++.|.++++.+|..|+..|..+..            .+.++.|+.+|++++ +.||..|+.+|..+....+         
T Consensus       627 ~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~~---------  684 (897)
T PRK13800        627 APYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGA-AAVRRAAAEGLRELVEVLP---------  684 (897)
T ss_pred             HHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhccC---------
Confidence            456788899999999988887643            236888899998888 8999999999988753111         


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCCh
Q 013228           82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIF  161 (447)
Q Consensus        82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~  161 (447)
                       ..+.|...|.++++.+|..++.+|..+....            ...++..| .+++..++..++.+|..+-.       
T Consensus       685 -~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L-~D~d~~VR~~Av~aL~~~~~-------  743 (897)
T PRK13800        685 -PAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAAL-GDPDHRVRIEAVRALVSVDD-------  743 (897)
T ss_pred             -chHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHh-cCCCHHHHHHHHHHHhcccC-------
Confidence             2356777888889999999999888875322            23456666 78888999999999887521       


Q ss_pred             hhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChh
Q 013228          162 DQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDF  241 (447)
Q Consensus       162 ~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~  241 (447)
                            .+.+..++.++++.|+..++.+|..+.....         ..++.|..++.++++.+|..|+..|+.+..... 
T Consensus       744 ------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~-  807 (897)
T PRK13800        744 ------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAELGCPPD-  807 (897)
T ss_pred             ------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcch-
Confidence                  1346678899999999999999988864321         236778899999999999999999998754211 


Q ss_pred             hHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhc
Q 013228          242 QTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNAT  321 (447)
Q Consensus       242 ~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~  321 (447)
                               ....+...+.++ ++.+|..|+++|+.+..  ++         .++.|+.++.+++..||..|+++|..+.
T Consensus       808 ---------~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~~--~~---------a~~~L~~~L~D~~~~VR~~A~~aL~~~~  866 (897)
T PRK13800        808 ---------DVAAATAALRAS-AWQVRQGAARALAGAAA--DV---------AVPALVEALTDPHLDVRKAAVLALTRWP  866 (897)
T ss_pred             ---------hHHHHHHHhcCC-ChHHHHHHHHHHHhccc--cc---------hHHHHHHHhcCCCHHHHHHHHHHHhccC
Confidence                     224578888888 89999999999988732  12         5688999999999999999999999972


Q ss_pred             CCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHH
Q 013228          322 FGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLE  361 (447)
Q Consensus       322 ~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~  361 (447)
                      .  ++.         ..+.|...+++.+++++..+..+|.
T Consensus       867 ~--~~~---------a~~~L~~al~D~d~~Vr~~A~~aL~  895 (897)
T PRK13800        867 G--DPA---------ARDALTTALTDSDADVRAYARRALA  895 (897)
T ss_pred             C--CHH---------HHHHHHHHHhCCCHHHHHHHHHHHh
Confidence            2  332         3666778999999999999988875

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.63  E-value=4.1e-13  Score=137.28  Aligned_cols=277  Identities=15%  Similarity=0.172  Sum_probs=218.6

Q ss_pred             cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHH
Q 013228           38 FGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCR  117 (447)
Q Consensus        38 ~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~  117 (447)
                      ...++.|+..|++++ +.+|..|+..|+.+..           .+.++.|...|.++++.+|..++.+|..+....+   
T Consensus       620 ~~~~~~L~~~L~D~d-~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~---  684 (897)
T PRK13800        620 APSVAELAPYLADPD-PGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP---  684 (897)
T ss_pred             chhHHHHHHHhcCCC-HHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC---
Confidence            457889999999999 9999999999998753           2467899999999999999999999988853221   


Q ss_pred             HHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 013228          118 DLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGT  197 (447)
Q Consensus       118 ~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~  197 (447)
                             ..+.+...| .++++.++..++.+|..+....           ...++..|.++++.++..++.+|..+..  
T Consensus       685 -------~~~~L~~~L-~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~--  743 (897)
T PRK13800        685 -------PAPALRDHL-GSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDD--  743 (897)
T ss_pred             -------chHHHHHHh-cCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccC--
Confidence                   134666777 6788899999999998875321           2356788999999999999999987521  


Q ss_pred             cHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHH
Q 013228          198 NDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISN  277 (447)
Q Consensus       198 ~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~n  277 (447)
                                  .+.|..++.++++.+|..++.+|+.+.....         ..++.|..++.++ ++.+|..|+.+|+.
T Consensus       744 ------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~-d~~VR~aA~~aLg~  801 (897)
T PRK13800        744 ------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDP-DPLVRAAALAALAE  801 (897)
T ss_pred             ------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCC-CHHHHHHHHHHHHh
Confidence                        2346678999999999999999998865322         2367788999998 99999999999999


Q ss_pred             HhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHH
Q 013228          278 ITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFL  357 (447)
Q Consensus       278 l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~  357 (447)
                      +... +.         ..+.+...+.++++.+|..|+++|..+...            ..++.|..+|.++++.++..++
T Consensus       802 ~g~~-~~---------~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~------------~a~~~L~~~L~D~~~~VR~~A~  859 (897)
T PRK13800        802 LGCP-PD---------DVAAATAALRASAWQVRQGAARALAGAAAD------------VAVPALVEALTDPHLDVRKAAV  859 (897)
T ss_pred             cCCc-ch---------hHHHHHHHhcCCChHHHHHHHHHHHhcccc------------chHHHHHHHhcCCCHHHHHHHH
Confidence            8442 11         235577888889999999999999887431            2468899999999999999999


Q ss_pred             HHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 013228          358 KGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILET  417 (447)
Q Consensus       358 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~  417 (447)
                      .+|..+ ...                      ....+.|...+++++++|+..|...|+.
T Consensus       860 ~aL~~~-~~~----------------------~~a~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        860 LALTRW-PGD----------------------PAARDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             HHHhcc-CCC----------------------HHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            999886 111                      1124566678889999999999998863

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.63  E-value=5.9e-14  Score=138.51  Aligned_cols=362  Identities=18%  Similarity=0.184  Sum_probs=270.8

Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCC---CHHHHHHHHHHHHHhhcCChhHHHH
Q 013228           43 RFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASP---SDDIREQAVCALGNVAADSARCRDL  119 (447)
Q Consensus        43 ~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~---~~~i~~~a~~~L~~l~~~~~~~~~~  119 (447)
                      .|..++...+    ++...+.+..++. +++....+...|.++.|++++..+   +.+.+..+-.+|.||....+..+..
T Consensus       201 sllsml~t~D----~ee~ar~fLemSs-s~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~  275 (2195)
T KOG2122|consen  201 SLLSMLGTDD----EEEMARTFLEMSS-SPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRG  275 (2195)
T ss_pred             HHhhhcccCC----HHHHHHHHHHhcc-CchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhh
Confidence            4444444444    5677778888888 788888999999999999999763   5688899999999999666543222


Q ss_pred             HHhcCCHHH---HHHHhc--------c------ccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhcc-----
Q 013228          120 VLSEEALIP---LLTQLN--------K------HAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHS-----  177 (447)
Q Consensus       120 ~~~~~~l~~---l~~~l~--------~------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~-----  177 (447)
                      =.+..++..   +.....        .      .++..-...|+.+|..++.+.+.+.....-|++..+..|+.-     
T Consensus       276 RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mh  355 (2195)
T KOG2122|consen  276 RREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMH  355 (2195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence            111122222   211111        1      112223445677777888777666666667888887777651     


Q ss_pred             -------CChhHHHHHHHHHHHhccCCcHHHHHHHH-hCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhh-HHHHHh
Q 013228          178 -------NDKEVMTDACRALFYLSEGTNDEIQAVIE-AGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQ-TQCIIN  248 (447)
Q Consensus       178 -------~~~~v~~~al~~l~~l~~~~~~~~~~~~~-~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~-~~~~~~  248 (447)
                             ....++.++..+|.||...+......+.. .|++..++..|.+..+++..-...+|.||+=..+.. .+.+-+
T Consensus       356 gp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE  435 (2195)
T KOG2122|consen  356 GPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRE  435 (2195)
T ss_pred             CCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHh
Confidence                   12578999999999999877665555543 499999999999988888888899999997444433 445556


Q ss_pred             cCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHHHhcC----chhHHHHHHHHHHHhcCC
Q 013228          249 CGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVID-AGLIGPLVNLLQNA----EFDIKNWAARAISNATFG  323 (447)
Q Consensus       249 ~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-~~~~~~L~~~l~~~----~~~v~~~a~~aL~~l~~~  323 (447)
                      .|-+..|...--........+..+.+|+||+.+..++...+.. .|.+..|+.+|..+    ...+.+.|...|.|.+..
T Consensus       436 ~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~  515 (2195)
T KOG2122|consen  436 TGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSL  515 (2195)
T ss_pred             hhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhH
Confidence            7777777776544436677788899999999887777777775 78999999999853    457788899999887652


Q ss_pred             --CCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhc
Q 013228          324 --GTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRS  401 (447)
Q Consensus       324 --~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~  401 (447)
                        ...++++.+.+..++..|++.|++..-.++..+++.|.||.-.+...             .+.+-+.|++..|.+|.+
T Consensus       516 IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~D-------------Qq~LwD~gAv~mLrnLIh  582 (2195)
T KOG2122|consen  516 IATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPED-------------QQMLWDDGAVPMLRNLIH  582 (2195)
T ss_pred             hhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHH-------------HHHHHhcccHHHHHHHHh
Confidence              24567888889999999999999999999999999999998776654             467788999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhcCCC
Q 013228          402 HDNDEIHEKSVKILETYWCGR  422 (447)
Q Consensus       402 ~~~~~v~~~a~~~l~~~~~~~  422 (447)
                      +.+.++-+-+...|.+++...
T Consensus       583 SKhkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  583 SKHKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             hhhhhhhhhHHHHHHHHhcCC
Confidence            999999999999888876543

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=1.6e-13  Score=125.94  Aligned_cols=316  Identities=15%  Similarity=0.155  Sum_probs=224.7

Q ss_pred             cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC----CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 013228           38 FGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH----GAVPIFVKLLASPSDDIREQAVCALGNVAADS  113 (447)
Q Consensus        38 ~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~----~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~  113 (447)
                      ..++|.|+++|.+++ ...++-|..+|.+++.++++.-+.-...    -.+|.++++.+++++.+|..|+.++..+....
T Consensus       127 pelLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~  205 (885)
T KOG2023|consen  127 PELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ  205 (885)
T ss_pred             hhHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecC
Confidence            357899999999999 7899999999999999877655442222    25788889999999999999999999887544


Q ss_pred             hhHHHHHHhc-CCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHH
Q 013228          114 ARCRDLVLSE-EALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFY  192 (447)
Q Consensus       114 ~~~~~~~~~~-~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~  192 (447)
                      +.  ...... .+++.+..+- ++.+++++.+.|.++..|....+........+++..+++..++.|++|...||.....
T Consensus       206 ~q--al~~~iD~Fle~lFala-nD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla  282 (885)
T KOG2023|consen  206 TQ--ALYVHIDKFLEILFALA-NDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLA  282 (885)
T ss_pred             cH--HHHHHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHH
Confidence            32  122221 1344444444 7889999999999999999887777777779999999999999999999999999999


Q ss_pred             hccCCcHHHHHHHH--hCcHHHHHHhcCCC--------------------------------------------------
Q 013228          193 LSEGTNDEIQAVIE--AGVCPRLVELLGHP--------------------------------------------------  220 (447)
Q Consensus       193 l~~~~~~~~~~~~~--~~~~~~L~~lL~~~--------------------------------------------------  220 (447)
                      +++.+... ..+..  ..++|.|+.-+...                                                  
T Consensus       283 ~aeqpi~~-~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~D  361 (885)
T KOG2023|consen  283 LAEQPICK-EVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDD  361 (885)
T ss_pred             HhcCcCcH-HHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccc
Confidence            99766321 21211  14566665544211                                                  


Q ss_pred             ------CchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHc--
Q 013228          221 ------SPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDA--  292 (447)
Q Consensus       221 ------~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~--  292 (447)
                            ++.+|+.++.+|.-++..-.   +.++. -++|.|-+.|.+. +..+|+.++.+++.++.+.-+   -++..  
T Consensus       362 DdD~~~dWNLRkCSAAaLDVLanvf~---~elL~-~l~PlLk~~L~~~-~W~vrEagvLAlGAIAEGcM~---g~~p~Lp  433 (885)
T KOG2023|consen  362 DDDAFSDWNLRKCSAAALDVLANVFG---DELLP-ILLPLLKEHLSSE-EWKVREAGVLALGAIAEGCMQ---GFVPHLP  433 (885)
T ss_pred             cccccccccHhhccHHHHHHHHHhhH---HHHHH-HHHHHHHHHcCcc-hhhhhhhhHHHHHHHHHHHhh---hcccchH
Confidence                  03456555555555443222   11222 2456666667777 999999999999999875432   22221  


Q ss_pred             CChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHH-HHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhh
Q 013228          293 GLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQI-KYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGE  368 (447)
Q Consensus       293 ~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~-~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~  368 (447)
                      .++|.|+++|.+..+-||..++|+|+..+..--.+.. +++..  ++..|...+-+++..++++|+.++..+-+...
T Consensus       434 eLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~p--vL~~ll~~llD~NK~VQEAAcsAfAtleE~A~  508 (885)
T KOG2023|consen  434 ELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKP--VLEGLLRRLLDSNKKVQEAACSAFATLEEEAG  508 (885)
T ss_pred             HHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHH--HHHHHHHHHhcccHHHHHHHHHHHHHHHHhcc
Confidence            2789999999999999999999999998764211112 22222  46666666678889999999999998876543

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=5.4e-12  Score=123.59  Aligned_cols=357  Identities=16%  Similarity=0.185  Sum_probs=251.5

Q ss_pred             ccccCCCHHHHHHHHHHHHHHHccCC--CCchhhhhccCCHHHHHH----hhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 013228            3 AGVWSDDNNMQLEATTHIRKLLSNAR--SAPTEEVIPFGVVPRFVE----FLMREDYPQLQFEAAWALKNIVSGTSEDTK   76 (447)
Q Consensus         3 ~~l~s~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~~~~v~~L~~----ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~   76 (447)
                      +.+++++..++..|++++..++....  ....+.+.  ..+|.++.    .++.++ .+....++.+|..++...+....
T Consensus       166 q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~--~llP~~l~vl~~~i~~~d-~~~a~~~l~~l~El~e~~pk~l~  242 (1075)
T KOG2171|consen  166 QTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFR--DLLPSLLNVLQEVIQDGD-DDAAKSALEALIELLESEPKLLR  242 (1075)
T ss_pred             HhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHH--HHhHHHHHHhHhhhhccc-hHHHHHHHHHHHHHHhhchHHHH
Confidence            45666666699999999998876541  22223332  25555554    445566 67788999999999987777655


Q ss_pred             HHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCChhHHHHHHh--cCCHHHHHHHhcc---c-----------cc
Q 013228           77 VVIDHGAVPIFVKLLAS--PSDDIREQAVCALGNVAADSARCRDLVLS--EEALIPLLTQLNK---H-----------AK  138 (447)
Q Consensus        77 ~~~~~~~i~~L~~ll~~--~~~~i~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~l~~~l~~---~-----------~~  138 (447)
                      ..+. .++..-+....+  -++.+|..|+.+|..++...|...+....  ...++.++.++..   +           .+
T Consensus       243 ~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~  321 (1075)
T KOG2171|consen  243 PHLS-QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDD  321 (1075)
T ss_pred             HHHH-HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccccccccc
Confidence            5543 356666666665  37899999999999999775544333222  1234444444421   0           01


Q ss_pred             -hhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhc
Q 013228          139 -LSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELL  217 (447)
Q Consensus       139 -~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL  217 (447)
                       ..-...|..++-.++.+-  ........+++.+-.++++++..-|..++.+|+-++++..+.....+ ..+++..+..|
T Consensus       322 ~~~~~~~A~~~lDrlA~~L--~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l  398 (1075)
T KOG2171|consen  322 EETPYRAAEQALDRLALHL--GGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGL  398 (1075)
T ss_pred             ccCcHHHHHHHHHHHHhcC--ChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhc
Confidence             124455667777777653  22334466778888899999999999999999999998877665433 35888899999


Q ss_pred             CCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChH
Q 013228          218 GHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAG-NSEHIQAVIDAGLIG  296 (447)
Q Consensus       218 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~~~  296 (447)
                      .++++.||..|+.+++.++..-....+.-....+++.|+..+.+..+.+++..|+.++-|++.. ..+.+...++. ++.
T Consensus       399 ~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~-lm~  477 (1075)
T KOG2171|consen  399 NDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDG-LME  477 (1075)
T ss_pred             CCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH-HHH
Confidence            9999999999999999999765555555556678889999999887889999999999999873 44444444443 555


Q ss_pred             -HHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCC----HHHHHHHHHHHHHHHHhhhh
Q 013228          297 -PLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCAD----PEIVTVFLKGLEKILKVGEA  369 (447)
Q Consensus       297 -~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~----~~~~~~a~~~l~~l~~~~~~  369 (447)
                       .+..+++++.+.+++.++.+|+..+........+++-.  .++.|...|...+    ..++..+++++.-+.....+
T Consensus       478 ~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~--~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGk  553 (1075)
T KOG2171|consen  478 KKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDR--LMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGK  553 (1075)
T ss_pred             HHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHH--HHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhh
Confidence             45555667889999999999999998665555565544  6888888887654    25666777777776654443

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.60  E-value=6.1e-13  Score=122.41  Aligned_cols=356  Identities=13%  Similarity=0.070  Sum_probs=240.9

Q ss_pred             HHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHH--HhCCChHHH
Q 013228           10 NNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVV--IDHGAVPIF   87 (447)
Q Consensus        10 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~--~~~~~i~~L   87 (447)
                      .+.+.+.+..+.....++ ......+.+.+.++.|.+++++++...+++..++++..+...++..-...  ....++..+
T Consensus        67 ~~~k~~~~~llns~f~~e-qd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~  145 (678)
T KOG1293|consen   67 TELKNGFAVLLNSLFLGE-QDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKF  145 (678)
T ss_pred             hhhhhhHHHHHHhHHhhc-cchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHH
Confidence            555555666666677765 66778889999999999999888856899999999999988554332222  222344555


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHH---HhcCCCCCCChhhH
Q 013228           88 VKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLS---NFCAGKPKPIFDQV  164 (447)
Q Consensus        88 ~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~---~l~~~~~~~~~~~~  164 (447)
                      .-++..+...+.+.-+...+++|... ..+..+...++.+.+.-++ .......+..+..+++   .+..+++.......
T Consensus       146 s~l~s~~lk~~~~l~~~~~a~~s~~~-~hq~Il~Na~i~ekI~~l~-~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l  223 (678)
T KOG1293|consen  146 SLLYSIELKYISRLDVSRAAHLSSTK-DHQLILCNAGILEKINILL-MYLSSKLRLAALLCLSRGDRILRNNPLGSMFLL  223 (678)
T ss_pred             HHHHhhhhhhhhhhhhhhhccccccc-hhhheeccccchhhHHHHH-HhhhHHHHHHHHHHhhccceeeecCchhHHHHH
Confidence            55544344455555555556666544 3555666666666655555 5666788888998888   66666544444332


Q ss_pred             -----hhhHH--HHHHhhccCChhHHHHHHHHHHHhccCCc-------------H---H-HH------------------
Q 013228          165 -----RPALP--ALAQLVHSNDKEVMTDACRALFYLSEGTN-------------D---E-IQ------------------  202 (447)
Q Consensus       165 -----~~~l~--~l~~ll~~~~~~v~~~al~~l~~l~~~~~-------------~---~-~~------------------  202 (447)
                           .++.+  .+.+++++++.+.+..++.++.++...+-             .   . .+                  
T Consensus       224 ~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~  303 (678)
T KOG1293|consen  224 GLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHT  303 (678)
T ss_pred             HHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhh
Confidence                 34444  34556666666666666666655543220             0   0 00                  


Q ss_pred             ----------------HHHHhCcHHHHHHhc-------------------------------------------------
Q 013228          203 ----------------AVIEAGVCPRLVELL-------------------------------------------------  217 (447)
Q Consensus       203 ----------------~~~~~~~~~~L~~lL-------------------------------------------------  217 (447)
                                      ...+....+.+.+++                                                 
T Consensus       304 ~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~  383 (678)
T KOG1293|consen  304 NVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLM  383 (678)
T ss_pred             hhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHc
Confidence                            000001111111111                                                 


Q ss_pred             ---CCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 013228          218 ---GHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGL  294 (447)
Q Consensus       218 ---~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~  294 (447)
                         ...+..++.+++.++-++++........+-...+...+++++..+ +..++..+.++++|+...-......++..|+
T Consensus       384 ~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp-~~~i~~~~lgai~NlVmefs~~kskfl~~ng  462 (678)
T KOG1293|consen  384 CLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDP-EIMIMGITLGAICNLVMEFSNLKSKFLRNNG  462 (678)
T ss_pred             cccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCc-chhHHHHHHHHHHHHHhhcccHHHHHHHcCc
Confidence               112335666677777776654443333344557889999999888 9999999999999999866677789999999


Q ss_pred             hHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 013228          295 IGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEA  369 (447)
Q Consensus       295 ~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~  369 (447)
                      ++.+.+++.+.++.+|..+.|+|.++..+++......+...-....+..+.+++++.+++.++..++|+....++
T Consensus       463 Id~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~  537 (678)
T KOG1293|consen  463 IDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRK  537 (678)
T ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHH
Confidence            999999999999999999999999999987666555555555566778888999999999999999999987544

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.55  E-value=8.4e-13  Score=129.13  Aligned_cols=352  Identities=16%  Similarity=0.209  Sum_probs=226.8

Q ss_pred             cccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCC
Q 013228            4 GVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGA   83 (447)
Q Consensus         4 ~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~   83 (447)
                      -|.++++.++..|++++.++...+       +. ..+++.+.+++.+++ +.||..|+.++..+....++...   .. .
T Consensus        87 dl~~~n~~~~~lAL~~l~~i~~~~-------~~-~~l~~~v~~ll~~~~-~~VRk~A~~~l~~i~~~~p~~~~---~~-~  153 (526)
T PF01602_consen   87 DLNSPNPYIRGLALRTLSNIRTPE-------MA-EPLIPDVIKLLSDPS-PYVRKKAALALLKIYRKDPDLVE---DE-L  153 (526)
T ss_dssp             HHCSSSHHHHHHHHHHHHHH-SHH-------HH-HHHHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHCHCCHH---GG-H
T ss_pred             hhcCCCHHHHHHHHhhhhhhcccc-------hh-hHHHHHHHHHhcCCc-hHHHHHHHHHHHHHhccCHHHHH---HH-H
Confidence            456777888888888887776331       12 225777788888888 78888888888888765554322   22 5


Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhc---cccchhHHHHHHHHHHHhcCCCCCCC
Q 013228           84 VPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLN---KHAKLSMLRIATWTLSNFCAGKPKPI  160 (447)
Q Consensus        84 i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~---~~~~~~~~~~a~~~L~~l~~~~~~~~  160 (447)
                      ++.+.+++.++++.++..|+.++..+ ..++....     ..++.++..|.   ...++-.+..++.++..++...    
T Consensus       154 ~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-----~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~----  223 (526)
T PF01602_consen  154 IPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-----SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPME----  223 (526)
T ss_dssp             HHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-----THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSS----
T ss_pred             HHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-----hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCC----
Confidence            77888888878888888888888888 22221100     23344444432   5566667777777777766443    


Q ss_pred             hhhH--hhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcC
Q 013228          161 FDQV--RPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG  238 (447)
Q Consensus       161 ~~~~--~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~  238 (447)
                      ....  ..+++.+..++++.++.+...++.++..+.....      .-..+++.|..++.++++.++..++..+..++..
T Consensus       224 ~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~  297 (526)
T PF01602_consen  224 PEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQS  297 (526)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCH
T ss_pred             hhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcc
Confidence            2222  5677888888888888888888888888775433      2235678888999988888999999999998876


Q ss_pred             ChhhHHHHHhcCChHHHHHhhc-cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCchhHHHHHHHH
Q 013228          239 DDFQTQCIINCGALPYLLGLLI-HNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQ-NAEFDIKNWAARA  316 (447)
Q Consensus       239 ~~~~~~~~~~~~~l~~l~~~l~-~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~-~~~~~v~~~a~~a  316 (447)
                      .+.    .+.  .....+..+. ++ +..+|..++..+..++.  +.+...     +++.|...+. ..+++++..++..
T Consensus       298 ~~~----~v~--~~~~~~~~l~~~~-d~~Ir~~~l~lL~~l~~--~~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~  363 (526)
T PF01602_consen  298 NPP----AVF--NQSLILFFLLYDD-DPSIRKKALDLLYKLAN--ESNVKE-----ILDELLKYLSELSDPDFRRELIKA  363 (526)
T ss_dssp             CHH----HHG--THHHHHHHHHCSS-SHHHHHHHHHHHHHH----HHHHHH-----HHHHHHHHHHHC--HHHHHHHHHH
T ss_pred             cch----hhh--hhhhhhheecCCC-ChhHHHHHHHHHhhccc--ccchhh-----HHHHHHHHHHhccchhhhhhHHHH
Confidence            621    122  2233344555 55 88899999999888865  344444     4666777774 4477888888888


Q ss_pred             HHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHH
Q 013228          317 ISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKI  396 (447)
Q Consensus       317 L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l  396 (447)
                      ++.++....+ ....     .++.+++++...++.+...+...+.+++...+..+            ...      ++.+
T Consensus       364 I~~la~~~~~-~~~~-----~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~------------~~~------l~~L  419 (526)
T PF01602_consen  364 IGDLAEKFPP-DAEW-----YVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELR------------EKI------LKKL  419 (526)
T ss_dssp             HHHHHHHHGS-SHHH-----HHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTH------------HHH------HHHH
T ss_pred             HHHHHhccCc-hHHH-----HHHHHHHhhhhccccccchHHHHHHHHhhcChhhh------------HHH------HHHH
Confidence            8888763211 1111     36677777777666666667777777765543321            111      2233


Q ss_pred             HHH-hcCCCHHHHHHHHHHHHHhcCCC
Q 013228          397 ENL-RSHDNDEIHEKSVKILETYWCGR  422 (447)
Q Consensus       397 ~~l-~~~~~~~v~~~a~~~l~~~~~~~  422 (447)
                      .++ ..-.++++...+.|++.+|.+..
T Consensus       420 ~~~l~~~~~~~~~~~~~wilGEy~~~~  446 (526)
T PF01602_consen  420 IELLEDISSPEALAAAIWILGEYGELI  446 (526)
T ss_dssp             HHHHTSSSSHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHhhHHHHHHHHHhhhcccCCcc
Confidence            332 33566777788888888776543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.53  E-value=4.4e-11  Score=108.92  Aligned_cols=321  Identities=14%  Similarity=0.175  Sum_probs=230.4

Q ss_pred             CChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCChhHHHHHHhc-----CCHHHHHHHhccccchhHHHHHHHHHHHhcCC
Q 013228           82 GAVPIFVKLLAS-PSDDIREQAVCALGNVAADSARCRDLVLSE-----EALIPLLTQLNKHAKLSMLRIATWTLSNFCAG  155 (447)
Q Consensus        82 ~~i~~L~~ll~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~-----~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  155 (447)
                      ..+..++.++.. ..+++.+.++..+.-+....+.....+.+.     ....+++.+| ...|.-+...++.+++.+...
T Consensus        53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL-~~~d~~i~~~a~~iLt~l~~~  131 (429)
T cd00256          53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLL-NRQDQFIVHMSFSILAKLACF  131 (429)
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHH-cCCchhHHHHHHHHHHHHHhc
Confidence            456777777765 678999999999999998877655555543     4677888888 567888999999999999876


Q ss_pred             CCCCChh-hHhhhHHHHHHhhccC-ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC--CchhHhHHHHH
Q 013228          156 KPKPIFD-QVRPALPALAQLVHSN-DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHP--SPSVLTRALQT  231 (447)
Q Consensus       156 ~~~~~~~-~~~~~l~~l~~ll~~~-~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~--~~~v~~~a~~~  231 (447)
                      .+..... .....++.+...++++ +...+.-++.++..+...+..+ ..+.+.++++.|..+|+..  ....+..++.|
T Consensus       132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R-~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~  210 (429)
T cd00256         132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYR-FAFVLADGVPTLVKLLSNATLGFQLQYQSIFC  210 (429)
T ss_pred             CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHH-HHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence            5332221 1223444556666654 4667777889999999777665 5677888999999999763  45788899999


Q ss_pred             HHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCC------HHHHHHHHHcCChHHHHHHHhc-
Q 013228          232 VVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGN------SEHIQAVIDAGLIGPLVNLLQN-  304 (447)
Q Consensus       232 l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~------~~~~~~l~~~~~~~~L~~~l~~-  304 (447)
                      ++-++...+ ........+.++.++++++....+++.+-++.++.|+...+      ......+++.|+.+ ++..|.. 
T Consensus       211 lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~r  288 (429)
T cd00256         211 IWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQR  288 (429)
T ss_pred             HHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhcC
Confidence            999987555 44556677999999999987768889999999999998742      12334556666655 4444442 


Q ss_pred             --CchhHHHHHHH-------HHHHhcC--------------CC--------CHHHHHHHHHcC--ChHHHHhhcc-CCCH
Q 013228          305 --AEFDIKNWAAR-------AISNATF--------------GG--------THEQIKYLVREG--CIKPLCDLLL-CADP  350 (447)
Q Consensus       305 --~~~~v~~~a~~-------aL~~l~~--------------~~--------~~~~~~~l~~~~--~l~~L~~ll~-~~~~  350 (447)
                        .|+++......       -+..++.              .+        -.++...|.+.+  ++..|+++|+ +.|+
T Consensus       289 k~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~  368 (429)
T cd00256         289 KYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDP  368 (429)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCc
Confidence              35554322211       1112221              00        123455555544  3678888884 5678


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 013228          351 EIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYW  419 (447)
Q Consensus       351 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  419 (447)
                      .+...|+.=++.+++.-+..             +..+...|+-+.+.+|++|++++|+..|..+++++.
T Consensus       369 ~~laVAc~Dige~vr~~P~g-------------r~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm  424 (429)
T cd00256         369 IILAVACHDIGEYVRHYPRG-------------KDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM  424 (429)
T ss_pred             ceeehhhhhHHHHHHHCccH-------------HHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            88888888899999876543             677889999999999999999999999999998764

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.53  E-value=8.6e-13  Score=121.28  Aligned_cols=321  Identities=19%  Similarity=0.223  Sum_probs=218.5

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcC----CHHHHHHHhccccchhHHHHHHHHHHHhcCCCC
Q 013228           82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEE----ALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKP  157 (447)
Q Consensus        82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~----~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~  157 (447)
                      .+++.|.++|.+++....+.|..+|..+|.+++..-+.-....    .++.+++.. +++++.++..|..++..+.-..+
T Consensus       128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~-~h~spkiRs~A~~cvNq~i~~~~  206 (885)
T KOG2023|consen  128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFF-KHPSPKIRSHAVGCVNQFIIIQT  206 (885)
T ss_pred             hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHH-hCCChhHHHHHHhhhhheeecCc
Confidence            4678999999999999999999999999998876433311122    366777777 77789999999999988776554


Q ss_pred             CCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhc
Q 013228          158 KPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAA  237 (447)
Q Consensus       158 ~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~  237 (447)
                      ..-.......+..+..+-.+.+++||+..|.++..+.+...++.... -.++++.++...++.++.|...||.....++.
T Consensus       207 qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~ph-l~~IveyML~~tqd~dE~VALEACEFwla~ae  285 (885)
T KOG2023|consen  207 QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPH-LDNIVEYMLQRTQDVDENVALEACEFWLALAE  285 (885)
T ss_pred             HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccc-hHHHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence            44444457788888888899999999999999999987655543211 23788888888899999999999999999987


Q ss_pred             CChhhHHHHHh---cCChHHHHHhhccCCc------------------hhHHH---------------------------
Q 013228          238 GDDFQTQCIIN---CGALPYLLGLLIHNHK------------------KSIKT---------------------------  269 (447)
Q Consensus       238 ~~~~~~~~~~~---~~~l~~l~~~l~~~~~------------------~~v~~---------------------------  269 (447)
                      ... . +.++.   ..++|.|+.-+..++.                  .++|.                           
T Consensus       286 qpi-~-~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDd  363 (885)
T KOG2023|consen  286 QPI-C-KEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDD  363 (885)
T ss_pred             CcC-c-HHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccc
Confidence            552 2 22221   2455666554432100                  00000                           


Q ss_pred             --HHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH----hcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHh
Q 013228          270 --DACWTISNITAGNSEHIQAVIDAGLIGPLVNLL----QNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCD  343 (447)
Q Consensus       270 --~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l----~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~  343 (447)
                        ..-|-|..++...-+....++...+++.++.++    .+++..+|+.+..+++.++.++-......+-+  .++.|++
T Consensus       364 D~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~Lpe--Lip~l~~  441 (885)
T KOG2023|consen  364 DAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPE--LIPFLLS  441 (885)
T ss_pred             cccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHH--HHHHHHH
Confidence              011333333333233333344444555555554    46789999999999999998764433344332  6899999


Q ss_pred             hccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 013228          344 LLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWCG  421 (447)
Q Consensus       344 ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  421 (447)
                      +|.++.+-+|...+|.|.++....-....           .+.|.  ..++-|.+-.-+.|.+|+++|.....++-+.
T Consensus       442 ~L~DKkplVRsITCWTLsRys~wv~~~~~-----------~~~f~--pvL~~ll~~llD~NK~VQEAAcsAfAtleE~  506 (885)
T KOG2023|consen  442 LLDDKKPLVRSITCWTLSRYSKWVVQDSR-----------DEYFK--PVLEGLLRRLLDSNKKVQEAACSAFATLEEE  506 (885)
T ss_pred             HhccCccceeeeeeeeHhhhhhhHhcCCh-----------HhhhH--HHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999876543321           11121  1122223334467899999999999988443

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.53  E-value=4.5e-13  Score=103.14  Aligned_cols=119  Identities=32%  Similarity=0.507  Sum_probs=110.2

Q ss_pred             hhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 013228           34 EVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADS  113 (447)
Q Consensus        34 ~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~  113 (447)
                      .+++.|+++.+++++.+++ +.++..++++|.+++..+++....+.+.|+++.++.++.++++.++..++++|++++...
T Consensus         2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence            4678899999999999998 899999999999999988999999999999999999999999999999999999999988


Q ss_pred             hhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcC
Q 013228          114 ARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCA  154 (447)
Q Consensus       114 ~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~  154 (447)
                      +..+..+...|+++.++..+ .+.+..+++.++|++.+++.
T Consensus        81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence            87788888899999999999 66688999999999999873

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.51  E-value=3.9e-12  Score=124.47  Aligned_cols=324  Identities=18%  Similarity=0.190  Sum_probs=237.6

Q ss_pred             cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228            2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH   81 (447)
Q Consensus         2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (447)
                      ++++.+.+...+.-+.-++..+.... ++ .-.+    +++.+.+-|++++ +.++..|+++++++..  ++....    
T Consensus        48 i~l~~s~~~~~Krl~yl~l~~~~~~~-~~-~~~l----~~n~l~kdl~~~n-~~~~~lAL~~l~~i~~--~~~~~~----  114 (526)
T PF01602_consen   48 IKLISSKDLELKRLGYLYLSLYLHED-PE-LLIL----IINSLQKDLNSPN-PYIRGLALRTLSNIRT--PEMAEP----  114 (526)
T ss_dssp             HCTCSSSSHHHHHHHHHHHHHHTTTS-HH-HHHH----HHHHHHHHHCSSS-HHHHHHHHHHHHHH-S--HHHHHH----
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHhhcc-hh-HHHH----HHHHHHHhhcCCC-HHHHHHHHhhhhhhcc--cchhhH----
Confidence            46677888888888888888877653 22 1111    5677788888988 8999999999999984  555443    


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCCh
Q 013228           82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIF  161 (447)
Q Consensus        82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~  161 (447)
                       +++.+.+++.++++.+|+.|+.++..+....|..   +... .++.+.+++ .+.++.++..|+.++..+ ...+....
T Consensus       115 -l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~~~~~~~  187 (526)
T PF01602_consen  115 -LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLL-SDKDPSVVSAALSLLSEI-KCNDDSYK  187 (526)
T ss_dssp             -HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHT-THSSHHHHHHHHHHHHHH-HCTHHHHT
T ss_pred             -HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhc-cCCcchhHHHHHHHHHHH-ccCcchhh
Confidence             3677888999999999999999999998665542   2222 477788888 788899999999999999 22111111


Q ss_pred             hhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChh
Q 013228          162 DQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDF  241 (447)
Q Consensus       162 ~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~  241 (447)
                      ......++.+.+++...++-.+..+++.+..++.........   ..+++.+..++.+.++.+...++.++..+....+ 
T Consensus       188 ~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-  263 (526)
T PF01602_consen  188 SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-  263 (526)
T ss_dssp             THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-
T ss_pred             hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-
Confidence            344666777777778889999999999999988665543311   4567888888888889999999999998776443 


Q ss_pred             hHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCchhHHHHHHHHHHHh
Q 013228          242 QTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQ-NAEFDIKNWAARAISNA  320 (447)
Q Consensus       242 ~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~-~~~~~v~~~a~~aL~~l  320 (447)
                           .-..+++.+..++.++ ++.++..++.++..++...+...    .  .....+..+. +++..+|..++..|..+
T Consensus       264 -----~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~~~~v----~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l  331 (526)
T PF01602_consen  264 -----LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSNPPAV----F--NQSLILFFLLYDDDPSIRKKALDLLYKL  331 (526)
T ss_dssp             -----HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHCHHHH----G--THHHHHHHHHCSSSHHHHHHHHHHHHHH
T ss_pred             -----HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhcccchhh----h--hhhhhhheecCCCChhHHHHHHHHHhhc
Confidence                 2224677899999988 99999999999999988653322    2  2222334455 78999999999999999


Q ss_pred             cCCCCHHHHHHHHHcCChHHHHhhc-cCCCHHHHHHHHHHHHHHHHhhhh
Q 013228          321 TFGGTHEQIKYLVREGCIKPLCDLL-LCADPEIVTVFLKGLEKILKVGEA  369 (447)
Q Consensus       321 ~~~~~~~~~~~l~~~~~l~~L~~ll-~~~~~~~~~~a~~~l~~l~~~~~~  369 (447)
                      +.   +.+...     +++.|...+ +..+++++..++..+..++.....
T Consensus       332 ~~---~~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~  373 (526)
T PF01602_consen  332 AN---ESNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP  373 (526)
T ss_dssp             -----HHHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS
T ss_pred             cc---ccchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc
Confidence            85   344444     477788888 455888999999999988876544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.50  E-value=1e-12  Score=101.17  Aligned_cols=117  Identities=34%  Similarity=0.526  Sum_probs=109.7

Q ss_pred             HHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCH
Q 013228          204 VIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNS  283 (447)
Q Consensus       204 ~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~  283 (447)
                      +.+.|+++.++.++.++++.++..+++++++++...+.....+.+.++++.+++++.++ ++.++..++|+|+|++...+
T Consensus         3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence            56789999999999999999999999999999998888888889999999999999998 99999999999999999877


Q ss_pred             HHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhc
Q 013228          284 EHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNAT  321 (447)
Q Consensus       284 ~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~  321 (447)
                      .....+.+.|+++.+++++..++..++..++++|.+++
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            77888889999999999999999999999999999986

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.48  E-value=2.8e-11  Score=110.18  Aligned_cols=312  Identities=12%  Similarity=0.057  Sum_probs=217.1

Q ss_pred             CCHHHHHHHHHHHHHHHccCCCCchhhhhc-----cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCC
Q 013228            8 DDNNMQLEATTHIRKLLSNARSAPTEEVIP-----FGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHG   82 (447)
Q Consensus         8 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-----~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~   82 (447)
                      .+.++....+..+..++... +.....+.+     ......++.+|..++ .-++..++.+|+.+....+.........-
T Consensus        66 ~~~d~vqyvL~Li~dll~~~-~~~~~~f~~~~~~~~~~~~~fl~lL~~~d-~~i~~~a~~iLt~l~~~~~~~~~~~~l~~  143 (429)
T cd00256          66 DKDDTVRYVLTLIDDMLQED-DTRVKLFHDDALLKKKTWEPFFNLLNRQD-QFIVHMSFSILAKLACFGLAKMEGSDLDY  143 (429)
T ss_pred             CcHHHHHHHHHHHHHHHHhc-hHHHHHHHHHhhccccchHHHHHHHcCCc-hhHHHHHHHHHHHHHhcCccccchhHHHH
Confidence            45677777777777777763 444444444     356778888998888 79999999999999864443211111111


Q ss_pred             ChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcccc-chhHHHHHHHHHHHhcCCCCCCC
Q 013228           83 AVPIFVKLLASP-SDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHA-KLSMLRIATWTLSNFCAGKPKPI  160 (447)
Q Consensus        83 ~i~~L~~ll~~~-~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~-~~~~~~~a~~~L~~l~~~~~~~~  160 (447)
                      .++.+...+.++ +...+..++.+|..+....+ +|..+.+.++++.++..|.... +.+++.+++.++|-++...+...
T Consensus       144 ~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~-~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~  222 (429)
T cd00256         144 YFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE-YRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAE  222 (429)
T ss_pred             HHHHHHHHhhccCCcchHHHHHHHHHHHhCCch-HHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHH
Confidence            334555566553 57888888999999987765 7888888889999999996555 67899999999999998864333


Q ss_pred             hhhHhhhHHHHHHhhccC-ChhHHHHHHHHHHHhccCCc------HHHHHHHHhCcHHHHHHhcCC--CCchhHhHHHH-
Q 013228          161 FDQVRPALPALAQLVHSN-DKEVMTDACRALFYLSEGTN------DEIQAVIEAGVCPRLVELLGH--PSPSVLTRALQ-  230 (447)
Q Consensus       161 ~~~~~~~l~~l~~ll~~~-~~~v~~~al~~l~~l~~~~~------~~~~~~~~~~~~~~L~~lL~~--~~~~v~~~a~~-  230 (447)
                      .....++++.++.+++.. .+++..-++.++.|+...+.      .....+++.|+.+.+-.+...  .++++....-. 
T Consensus       223 ~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L  302 (429)
T cd00256         223 VLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFL  302 (429)
T ss_pred             hhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHH
Confidence            333478999999999854 68899999999999997431      222345666665554444432  34433222111 


Q ss_pred             ------HHHHhhcC--------------Ch---------hhHHHHHhc--CChHHHHHhhccCCchhHHHHHHHHHHHHh
Q 013228          231 ------TVVNIAAG--------------DD---------FQTQCIINC--GALPYLLGLLIHNHKKSIKTDACWTISNIT  279 (447)
Q Consensus       231 ------~l~~l~~~--------------~~---------~~~~~~~~~--~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~  279 (447)
                            .+..++..              +|         +....+-+.  .++..|+++|..+.++.+..-||.=++.++
T Consensus       303 ~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~v  382 (429)
T cd00256         303 TEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYV  382 (429)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHH
Confidence                  11111111              11         112222222  357889999965548888899999999999


Q ss_pred             cCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcC
Q 013228          280 AGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATF  322 (447)
Q Consensus       280 ~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~  322 (447)
                      ...|..+..+-+.|+=..+++++.++|++||.+|+.++..+..
T Consensus       383 r~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  425 (429)
T cd00256         383 RHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV  425 (429)
T ss_pred             HHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            9878878777789999999999999999999999999987753

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PTZ00429 beta-adaptin; Provisional

Probab=99.45  E-value=9.7e-10  Score=108.01  Aligned_cols=366  Identities=13%  Similarity=0.090  Sum_probs=217.3

Q ss_pred             cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228            2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH   81 (447)
Q Consensus         2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (447)
                      ++++.++|..++.-..-++.+.+... ++..  +   -+++.+.+-+++++ +.+|..|+++|+++-.  ++....    
T Consensus        74 vk~~~S~d~elKKLvYLYL~~ya~~~-pela--l---LaINtl~KDl~d~N-p~IRaLALRtLs~Ir~--~~i~e~----  140 (746)
T PTZ00429         74 VKLAPSTDLELKKLVYLYVLSTARLQ-PEKA--L---LAVNTFLQDTTNSS-PVVRALAVRTMMCIRV--SSVLEY----  140 (746)
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHcccC-hHHH--H---HHHHHHHHHcCCCC-HHHHHHHHHHHHcCCc--HHHHHH----
Confidence            34556666666666666666665432 1111  1   14666777777777 8888888888888765  333322    


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCCh
Q 013228           82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIF  161 (447)
Q Consensus        82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~  161 (447)
                       ++..+.+.+.+.++.||+.|+.++.++...++.   .+...+.++.+..+| .+.|+.+..+|+.+|..+....+. ..
T Consensus       141 -l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~~~~-~l  214 (746)
T PTZ00429        141 -TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDYGSE-KI  214 (746)
T ss_pred             -HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHhCch-hh
Confidence             346677778888999999999999998765553   334556777888877 788889999999999999866543 23


Q ss_pred             hhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCC-h
Q 013228          162 DQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGD-D  240 (447)
Q Consensus       162 ~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~-~  240 (447)
                      ......+..++..+..-++-.+...+.+|......++...     ..++..+...|.+.++.|...|++++.++.... +
T Consensus       215 ~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~  289 (746)
T PTZ00429        215 ESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQ  289 (746)
T ss_pred             HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCH
Confidence            3445666667777766677677777777765432222211     256788888899999999999999999887543 2


Q ss_pred             hhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--------------------------c--
Q 013228          241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVID--------------------------A--  292 (447)
Q Consensus       241 ~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~--------------------------~--  292 (447)
                      .....+.. .+-..++.++ ++ +++++..+...+.-+....+.....-++                          .  
T Consensus       290 ~~~~~~~~-rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv  366 (746)
T PTZ00429        290 ELIERCTV-RVNTALLTLS-RR-DAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVA  366 (746)
T ss_pred             HHHHHHHH-HHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccH
Confidence            22222211 1223444443 44 5677777766665554433322111000                          0  


Q ss_pred             -CChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhh
Q 013228          293 -GLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEK  371 (447)
Q Consensus       293 -~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~  371 (447)
                       .++..|.+...+.+.++++.++.+++.++..- +....     .++..|++++..... +...++..+.++++..++  
T Consensus       367 ~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~-~~~a~-----~cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~--  437 (746)
T PTZ00429        367 PEILKELAEYASGVDMVFVVEVVRAIASLAIKV-DSVAP-----DCANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPE--  437 (746)
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC-hHHHH-----HHHHHHHHHhcCCch-hHHHHHHHHHHHHHHCcc--
Confidence             02333444444455666666666666666532 22222     246666666654333 333455555555543211  


Q ss_pred             hhhhhcccccHHHHHHHHhchHHHHHHH---hcCCCHHHHHHHHHHHHHhcCC
Q 013228          372 NMDIAIGDVNQYAQLVEEAEGLEKIENL---RSHDNDEIHEKSVKILETYWCG  421 (447)
Q Consensus       372 ~~~~~~~~~~~~~~~i~~~~~~~~l~~l---~~~~~~~v~~~a~~~l~~~~~~  421 (447)
                                  ..      .+..|...   ..-.+++.+....|++..|.+.
T Consensus       438 ------------~~------il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~  472 (746)
T PTZ00429        438 ------------LL------MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDF  472 (746)
T ss_pred             ------------HH------HHHHHHHhhcccccccHHHHHHHHHHHHhhHhh
Confidence                        00      12333221   2335677777778999988764

>PTZ00429 beta-adaptin; Provisional

Probab=99.41  E-value=1.9e-09  Score=105.97  Aligned_cols=362  Identities=11%  Similarity=0.049  Sum_probs=227.1

Q ss_pred             cccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCC
Q 013228            4 GVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGA   83 (447)
Q Consensus         4 ~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~   83 (447)
                      -++++|+.+|-.|++.+.++-...       +++ -+++.+.+.+.+.+ +-||..|+.++.++...+++   .+.+.|.
T Consensus       113 Dl~d~Np~IRaLALRtLs~Ir~~~-------i~e-~l~~~lkk~L~D~~-pYVRKtAalai~Kly~~~pe---lv~~~~~  180 (746)
T PTZ00429        113 DTTNSSPVVRALAVRTMMCIRVSS-------VLE-YTLEPLRRAVADPD-PYVRKTAAMGLGKLFHDDMQ---LFYQQDF  180 (746)
T ss_pred             HcCCCCHHHHHHHHHHHHcCCcHH-------HHH-HHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhhCcc---cccccch
Confidence            456777888888877776654321       111 25666778888888 99999999999999875553   3445678


Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhh
Q 013228           84 VPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQ  163 (447)
Q Consensus        84 i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  163 (447)
                      ++.|..++.+.++.+..+|+.+|..+....+..  .-...+.+..++..+ ...++=.+...+.+|   +...|... ..
T Consensus       181 ~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~--l~l~~~~~~~Ll~~L-~e~~EW~Qi~IL~lL---~~y~P~~~-~e  253 (746)
T PTZ00429        181 KKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK--IESSNEWVNRLVYHL-PECNEWGQLYILELL---AAQRPSDK-ES  253 (746)
T ss_pred             HHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh--hHHHHHHHHHHHHHh-hcCChHHHHHHHHHH---HhcCCCCc-HH
Confidence            899999999999999999999999998665432  112233456667766 333443444444444   33333222 22


Q ss_pred             HhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCc-HHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhh
Q 013228          164 VRPALPALAQLVHSNDKEVMTDACRALFYLSEGTN-DEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQ  242 (447)
Q Consensus       164 ~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~-~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~  242 (447)
                      ...++..+...|++.++.|...+++++.++....+ ....... ..+...++.+ .+.++.++..+++.+.-+....+..
T Consensus       254 ~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~-~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P~l  331 (746)
T PTZ00429        254 AETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCT-VRVNTALLTL-SRRDAETQYIVCKNIHALLVIFPNL  331 (746)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHH-HHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCHHH
Confidence            36778888889999999999999999999985532 2222111 1223445555 3456778888877776665544321


Q ss_pred             HHHHHh--------------------------c---CChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 013228          243 TQCIIN--------------------------C---GALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAG  293 (447)
Q Consensus       243 ~~~~~~--------------------------~---~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~  293 (447)
                      ...-++                          .   .++.-|.+...+. +.++++.++.+++.++...+....     .
T Consensus       332 f~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~-D~ef~r~aIrAIg~lA~k~~~~a~-----~  405 (746)
T PTZ00429        332 LRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYASGV-DMVFVVEVVRAIASLAIKVDSVAP-----D  405 (746)
T ss_pred             HHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHhChHHHH-----H
Confidence            111000                          0   1223333344444 677888888888888765444222     3


Q ss_pred             ChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhc---cCCCHHHHHHHHHHHHHHHHhhhhh
Q 013228          294 LIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLL---LCADPEIVTVFLKGLEKILKVGEAE  370 (447)
Q Consensus       294 ~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll---~~~~~~~~~~a~~~l~~l~~~~~~~  370 (447)
                      ++..|++++..+.. +..+++.++.++.... ++.       ..+..|+..+   .-.+++.+...+|+|+.+...-++ 
T Consensus       406 cV~~Ll~ll~~~~~-~v~e~i~vik~Ilrky-P~~-------~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~-  475 (746)
T PTZ00429        406 CANLLLQIVDRRPE-LLPQVVTAAKDIVRKY-PEL-------LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN-  475 (746)
T ss_pred             HHHHHHHHhcCCch-hHHHHHHHHHHHHHHC-ccH-------HHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh-
Confidence            56678888875433 4557788888887643 221       1355555543   235678888889999987653211 


Q ss_pred             hhhhhhcccccHHHHHHHHhchHHHHHHHh---cCCCHHHHHHHHHHHHHhcCCCC
Q 013228          371 KNMDIAIGDVNQYAQLVEEAEGLEKIENLR---SHDNDEIHEKSVKILETYWCGRV  423 (447)
Q Consensus       371 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~---~~~~~~v~~~a~~~l~~~~~~~~  423 (447)
                                           +...|..+.   ...+++|+.......-++|-...
T Consensus       476 ---------------------a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p  510 (746)
T PTZ00429        476 ---------------------GKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDP  510 (746)
T ss_pred             ---------------------HHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCc
Confidence                                 123333333   34568888887777777775443

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=1.2e-10  Score=110.31  Aligned_cols=337  Identities=17%  Similarity=0.153  Sum_probs=238.7

Q ss_pred             cccccCC-CHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228            2 VAGVWSD-DNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID   80 (447)
Q Consensus         2 v~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (447)
                      |.+|+.+ +.+++..|+++|..++.-- +.....+++.++||.|+.-|..-..-++.++++.+|-.++...   -..+.+
T Consensus       217 v~LL~~E~n~DIMl~AcRaltyl~evl-P~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H---~~AiL~  292 (1051)
T KOG0168|consen  217 VALLSHEHNFDIMLLACRALTYLCEVL-PRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH---PKAILQ  292 (1051)
T ss_pred             HHHHhccccHHHHHHHHHHHHHHHhhc-cchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc---cHHHHh
Confidence            4556654 4899999999999998765 6677888999999999987766555899999999999999843   456889


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh-hHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCC
Q 013228           81 HGAVPIFVKLLASPSDDIREQAVCALGNVAADSA-RCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKP  159 (447)
Q Consensus        81 ~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~  159 (447)
                      +|++...+.+++--+..+++.|+.+..|+|..-+ .-...++  ..+|.|..+| +..|....+.++.++..++......
T Consensus       293 AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~--ealPlL~~lL-s~~D~k~ies~~ic~~ri~d~f~h~  369 (1051)
T KOG0168|consen  293 AGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVM--EALPLLTPLL-SYQDKKPIESVCICLTRIADGFQHG  369 (1051)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHH--HHHHHHHHHH-hhccchhHHHHHHHHHHHHHhcccC
Confidence            9999999999988889999999999999994322 1223333  3688888888 7778889999999999998776222


Q ss_pred             Chhh----HhhhHHHHHHhhccCC----hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCc---------
Q 013228          160 IFDQ----VRPALPALAQLVHSND----KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSP---------  222 (447)
Q Consensus       160 ~~~~----~~~~l~~l~~ll~~~~----~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~---------  222 (447)
                      ....    ..+++..+.+++.-.+    ..+-.-.++.+.-++..++.....+.+.++...|..+|...+.         
T Consensus       370 ~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~  449 (1051)
T KOG0168|consen  370 PDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHEL  449 (1051)
T ss_pred             hHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccc
Confidence            2221    2677777777776442    3444556777888887777666777788888888877743110         


Q ss_pred             -----hhHhHHH----------------------------------------------------HHHHHh----------
Q 013228          223 -----SVLTRAL----------------------------------------------------QTVVNI----------  235 (447)
Q Consensus       223 -----~v~~~a~----------------------------------------------------~~l~~l----------  235 (447)
                           .-.....                                                    +.+..+          
T Consensus       450 l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~  529 (1051)
T KOG0168|consen  450 LSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQ  529 (1051)
T ss_pred             cccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhh
Confidence                 0000000                                                    001100          


Q ss_pred             ------------hcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHc-CChHHHHHH
Q 013228          236 ------------AAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA-GNSEHIQAVIDA-GLIGPLVNL  301 (447)
Q Consensus       236 ------------~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~-~~~~~L~~~  301 (447)
                                  ....++..+.++. ..++.|+++..+..++.||..+..+|..+.. .+.+.++.++.. .+-..+-.+
T Consensus       530 ~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~  608 (1051)
T KOG0168|consen  530 QDKLNGSAREGLLKNQPELLQSFGK-DLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGM  608 (1051)
T ss_pred             hhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhh
Confidence                        0001111121222 4688888888887799999999999998876 566777777764 455567778


Q ss_pred             HhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcc
Q 013228          302 LQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLL  346 (447)
Q Consensus       302 l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~  346 (447)
                      +.++|..+..-|+...--+...-..-....|.+.|++..+-++..
T Consensus       609 lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~~  653 (1051)
T KOG0168|consen  609 LSSKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLSV  653 (1051)
T ss_pred             hhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHhc
Confidence            888898887777776666665534445577788898888888776

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.38  E-value=3.5e-10  Score=106.13  Aligned_cols=355  Identities=18%  Similarity=0.184  Sum_probs=238.6

Q ss_pred             CCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHH
Q 013228            8 DDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIF   87 (447)
Q Consensus         8 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L   87 (447)
                      ++..+|+.|+.+|.+-+...+...-+..-+.-++...++.-++++ .+++..|..||..+..-..++....+....+..-
T Consensus       186 ~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d-~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfait  264 (859)
T KOG1241|consen  186 TSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPD-EEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAIT  264 (859)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457899999999998776532223334444456777788888888 8999999999999998777777777777777777


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhhcCChhH----HH-----------HH---HhcCCHHHHHHHhcc-c-----cchhHHH
Q 013228           88 VKLLASPSDDIREQAVCALGNVAADSARC----RD-----------LV---LSEEALIPLLTQLNK-H-----AKLSMLR  143 (447)
Q Consensus        88 ~~ll~~~~~~i~~~a~~~L~~l~~~~~~~----~~-----------~~---~~~~~l~~l~~~l~~-~-----~~~~~~~  143 (447)
                      +..+.++++++.-+++...+++|...-..    .+           .+   .-.+++|.|+++|.+ +     .+...-.
T Consensus       265 l~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~k  344 (859)
T KOG1241|consen  265 LAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAK  344 (859)
T ss_pred             HHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHH
Confidence            88888999999999999999998532110    00           00   112457778888854 1     2345566


Q ss_pred             HHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCch
Q 013228          144 IATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPS  223 (447)
Q Consensus       144 ~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~  223 (447)
                      .|..||.-++....+   ..+..++|.+-.-++++|..-++.+..+++.+...++...-.-+-.++++.++.++.+++--
T Consensus       345 AAg~CL~l~A~~~~D---~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~  421 (859)
T KOG1241|consen  345 AAGVCLMLFAQCVGD---DIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLW  421 (859)
T ss_pred             HHHHHHHHHHHHhcc---cchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhh
Confidence            666666655543211   23357788888888899999999999999999987765544444568899999999998888


Q ss_pred             hHhHHHHHHHHhhcCChhhHH-HHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHH---------HHHHHcC
Q 013228          224 VLTRALQTVVNIAAGDDFQTQ-CIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHI---------QAVIDAG  293 (447)
Q Consensus       224 v~~~a~~~l~~l~~~~~~~~~-~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~---------~~l~~~~  293 (447)
                      ++..+.|+++.++.+.++.+. .......++.++..|.+  .+.+...+||++.+++.+-.+..         ..+.+. 
T Consensus       422 VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D--ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~-  498 (859)
T KOG1241|consen  422 VKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND--EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEA-  498 (859)
T ss_pred             hcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh--CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHH-
Confidence            999999999999987764322 22233556667777754  58899999999999984211110         011111 


Q ss_pred             ChHHHHHHHhc---CchhHHHHHHHHHHHhcCCCCHHHHHHHHHc--CChHHHHh-----hccCCC----HHHHHHHHHH
Q 013228          294 LIGPLVNLLQN---AEFDIKNWAARAISNATFGGTHEQIKYLVRE--GCIKPLCD-----LLLCAD----PEIVTVFLKG  359 (447)
Q Consensus       294 ~~~~L~~~l~~---~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~--~~l~~L~~-----ll~~~~----~~~~~~a~~~  359 (447)
                      ++..|+.....   .+..+|..|..+|..+..+...+....+...  -.+..|-+     .+...+    .+++...+..
T Consensus       499 ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~  578 (859)
T KOG1241|consen  499 IIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNT  578 (859)
T ss_pred             HHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHH
Confidence            34444444443   3578999999999999998765554433220  11222222     222222    2566666677


Q ss_pred             HHHHHHhhhh
Q 013228          360 LEKILKVGEA  369 (447)
Q Consensus       360 l~~l~~~~~~  369 (447)
                      |..+++....
T Consensus       579 Lq~i~rk~~~  588 (859)
T KOG1241|consen  579 LQSIIRKVGS  588 (859)
T ss_pred             HHHHHHHccc
Confidence            7777765443

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.33  E-value=5.5e-10  Score=104.83  Aligned_cols=358  Identities=13%  Similarity=0.061  Sum_probs=227.9

Q ss_pred             cccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCC
Q 013228            4 GVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGA   83 (447)
Q Consensus         4 ~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~   83 (447)
                      .|.+..|...-.|+.++..++.-+ -++ ..  =.++++.|+.....+....+++.++.+++.+|.+-..-...-....+
T Consensus        98 tL~~~ep~~~s~Aaq~va~IA~~E-lP~-n~--wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~i  173 (859)
T KOG1241|consen   98 TLGSPEPRRPSSAAQCVAAIACIE-LPQ-NQ--WPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDI  173 (859)
T ss_pred             HcCCCCCCccchHHHHHHHHHHhh-Cch-hh--CHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHH
Confidence            355566666666666666666553 111 00  02356666666666653469999999999999843322222223357


Q ss_pred             hHHHHHhhCC--CCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCCh
Q 013228           84 VPIFVKLLAS--PSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIF  161 (447)
Q Consensus        84 i~~L~~ll~~--~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~  161 (447)
                      +..++.-++.  ++..+|-.++.+|.|--......-..=.+.+.+-..+--..+++|.+++..|..||..+..-......
T Consensus       174 LtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~  253 (859)
T KOG1241|consen  174 LTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFME  253 (859)
T ss_pred             HHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7778877665  68899999999999865322211111112233332222233788999999999999988754322222


Q ss_pred             hhH-hhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcH---------------HHHHHHH---hCcHHHHHHhcCC---
Q 013228          162 DQV-RPALPALAQLVHSNDKEVMTDACRALFYLSEGTND---------------EIQAVIE---AGVCPRLVELLGH---  219 (447)
Q Consensus       162 ~~~-~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~---------------~~~~~~~---~~~~~~L~~lL~~---  219 (447)
                      ..+ ...++.-+..+++++++|...++..-++++...-+               ....+..   .+++|.|+++|..   
T Consensus       254 ~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde  333 (859)
T KOG1241|consen  254 PYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDE  333 (859)
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCC
Confidence            222 34556666677899999999999988888853221               0011111   2567888888843   


Q ss_pred             ----CCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCh
Q 013228          220 ----PSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLI  295 (447)
Q Consensus       220 ----~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~  295 (447)
                          +++..-..|..||.-++....+   .++. .+++.+-+-++++ +..-|..|+.+++.+..+.....-.-+..+.+
T Consensus       334 ~~d~DdWnp~kAAg~CL~l~A~~~~D---~Iv~-~Vl~Fiee~i~~p-dwr~reaavmAFGSIl~gp~~~~Lt~iV~qal  408 (859)
T KOG1241|consen  334 DDDDDDWNPAKAAGVCLMLFAQCVGD---DIVP-HVLPFIEENIQNP-DWRNREAAVMAFGSILEGPEPDKLTPIVIQAL  408 (859)
T ss_pred             CcccccCcHHHHHHHHHHHHHHHhcc---cchh-hhHHHHHHhcCCc-chhhhhHHHHHHHhhhcCCchhhhhHHHhhhh
Confidence                3467778887787776643332   1222 5667777778888 99999999999999988654444444455699


Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhh
Q 013228          296 GPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEK  371 (447)
Q Consensus       296 ~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~  371 (447)
                      |.++.++.++...++..+.|+++.++..............+.+..+..-|. ..|.+...++|++.+|.+...+..
T Consensus       409 p~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~  483 (859)
T KOG1241|consen  409 PSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAA  483 (859)
T ss_pred             HHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhc
Confidence            999999998888999999999999987532111111112233444444443 456788899999999997655443

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.26  E-value=3.6e-09  Score=91.91  Aligned_cols=188  Identities=20%  Similarity=0.181  Sum_probs=157.8

Q ss_pred             CChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHH
Q 013228          178 NDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLG  257 (447)
Q Consensus       178 ~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~  257 (447)
                      .+.+-+..++.-|..++..-+ ....++..|++..++..+.+.+..+|..|+++|+..+..+|.....+++.|+++.|+.
T Consensus        95 ~~le~ke~ald~Le~lve~iD-nAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~  173 (342)
T KOG2160|consen   95 VDLEDKEDALDNLEELVEDID-NANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK  173 (342)
T ss_pred             CCHHHHHHHHHHHHHHHHhhh-hHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence            356667777777777775443 3456888899999999999999999999999999999999999999999999999999


Q ss_pred             hhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc--CchhHHHHHHHHHHHhcCCCCHHHHHHHHHc
Q 013228          258 LLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQN--AEFDIKNWAARAISNATFGGTHEQIKYLVRE  335 (447)
Q Consensus       258 ~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~  335 (447)
                      ++.++.+..+|..|.++++.+.+..+.....+...++...|.+.+++  .+..++..++..+..++... +.....+...
T Consensus       174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~-~s~~d~~~~~  252 (342)
T KOG2160|consen  174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQED-KSDEDIASSL  252 (342)
T ss_pred             HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh-hhhhhHHHHh
Confidence            99987678889999999999999888888889998889999999998  57788899999999998753 3334455566


Q ss_pred             CChHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 013228          336 GCIKPLCDLLLCADPEIVTVFLKGLEKILKVG  367 (447)
Q Consensus       336 ~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~  367 (447)
                      +....+..+....+.++...++.++..++..-
T Consensus       253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~  284 (342)
T KOG2160|consen  253 GFQRVLENLISSLDFEVNEAALTALLSLLSEL  284 (342)
T ss_pred             hhhHHHHHHhhccchhhhHHHHHHHHHHHHHH
Confidence            77777888888888888888888877776543

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.25  E-value=5.5e-08  Score=92.05  Aligned_cols=327  Identities=14%  Similarity=0.147  Sum_probs=239.2

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCCh--
Q 013228           39 GVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLAS--PSDDIREQAVCALGNVAADSA--  114 (447)
Q Consensus        39 ~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~i~~~a~~~L~~l~~~~~--  114 (447)
                      .-++.|+.-+.+..-.+-|+.|++.|..++.   ++|..+... ++++|+..|+.  .++++...++.++.++....+  
T Consensus        22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~   97 (970)
T KOG0946|consen   22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP   97 (970)
T ss_pred             hHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence            3688888888776557889999999999987   677766655 58999999876  589999999999999985442  


Q ss_pred             ------h--------HHHH-HHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhh---HhhhHHHHHHhhc
Q 013228          115 ------R--------CRDL-VLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQ---VRPALPALAQLVH  176 (447)
Q Consensus       115 ------~--------~~~~-~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~---~~~~l~~l~~ll~  176 (447)
                            .        +.+. +...+.+..++..+ ...|-.++.++...+.++.+..|......   ...++..++.+|+
T Consensus        98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~  176 (970)
T KOG0946|consen   98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSL-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR  176 (970)
T ss_pred             hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHH-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh
Confidence                  1        1122 33456788888888 77788999999999999988764333222   2678999999999


Q ss_pred             cCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC----CchhHhHHHHHHHHhhcCChhhHHHHHhcCCh
Q 013228          177 SNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHP----SPSVLTRALQTVVNIAAGDDFQTQCIINCGAL  252 (447)
Q Consensus       177 ~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~----~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l  252 (447)
                      +..+.+|-.++..|..++..++...+.+.=.+++..|..++...    ..-|...|+..+.|+...+......+.+.+.+
T Consensus       177 DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i  256 (970)
T KOG0946|consen  177 DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYI  256 (970)
T ss_pred             hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccH
Confidence            99999999999999999987776655555568999999999652    23577889999999999998888889999999


Q ss_pred             HHHHHhhccCC--ch--------hH--HHHHHHHHHHHhc-CC-H----HHHHHHHHcCChHHHHHHHhcC--chhHHHH
Q 013228          253 PYLLGLLIHNH--KK--------SI--KTDACWTISNITA-GN-S----EHIQAVIDAGLIGPLVNLLQNA--EFDIKNW  312 (447)
Q Consensus       253 ~~l~~~l~~~~--~~--------~v--~~~a~~~l~nl~~-~~-~----~~~~~l~~~~~~~~L~~~l~~~--~~~v~~~  312 (447)
                      +.|.++|....  +.        ++  ...+..++..+.. ++ +    .+.+.+...+++..|+.++.++  ..+++..
T Consensus       257 ~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlte  336 (970)
T KOG0946|consen  257 PRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTE  336 (970)
T ss_pred             HHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHH
Confidence            99998875321  21        11  1345555555554 21 1    2224556788999999998876  4688889


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHcC------ChH----HHHhhccC-CCHHHHHHHHHHHHHHHHhhhhhh
Q 013228          313 AARAISNATFGGTHEQIKYLVREG------CIK----PLCDLLLC-ADPEIVTVFLKGLEKILKVGEAEK  371 (447)
Q Consensus       313 a~~aL~~l~~~~~~~~~~~l~~~~------~l~----~L~~ll~~-~~~~~~~~a~~~l~~l~~~~~~~~  371 (447)
                      +..++.++.+.. ......|.+..      ..+    .++.+..+ ....+|.+++.++..++......+
T Consensus       337 siitvAevVRgn-~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq  405 (970)
T KOG0946|consen  337 SIITVAEVVRGN-ARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQ  405 (970)
T ss_pred             HHHHHHHHHHhc-hHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhH
Confidence            999999988763 34444444321      112    23334444 345889999999999887665543

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.25  E-value=2e-09  Score=94.69  Aligned_cols=309  Identities=14%  Similarity=0.087  Sum_probs=212.8

Q ss_pred             HHHHHHHHHHHHHHHccCCCCchhhhh-------ccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCC
Q 013228           10 NNMQLEATTHIRKLLSNARSAPTEEVI-------PFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHG   82 (447)
Q Consensus        10 ~~~~~~a~~~l~~l~~~~~~~~~~~~~-------~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~   82 (447)
                      ++.....+..+..+++.+  ..+..++       ..-.-+..+.+|..++ .-+...+.+++..++..........-..=
T Consensus        80 dd~v~yvL~li~DmLs~d--~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d-~~iv~~~~~Ils~la~~g~~~~~~~e~~~  156 (442)
T KOG2759|consen   80 DDTVQYVLTLIDDMLSED--RSRVDLFHDYAHKLKRTEWLSFLNLLNRQD-TFIVEMSFRILSKLACFGNCKMELSELDV  156 (442)
T ss_pred             HHHHHHHHHHHHHHHhhC--chHHHHHHHHHHhhhccchHHHHHHHhcCC-hHHHHHHHHHHHHHHHhccccccchHHHH
Confidence            556666666666666653  2221111       1233567788888888 78888899999998873332211100000


Q ss_pred             ChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHh-ccccchhHHHHHHHHHHHhcCCCCCCC
Q 013228           83 AVPIFVKLLAS-PSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQL-NKHAKLSMLRIATWTLSNFCAGKPKPI  160 (447)
Q Consensus        83 ~i~~L~~ll~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l-~~~~~~~~~~~a~~~L~~l~~~~~~~~  160 (447)
                      ....|...+.+ .++.....++++|..+...++ +|..+...+++..++..+ .+..+-.++.+.+.+++.|+.+++...
T Consensus       157 ~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~e-yR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae  235 (442)
T KOG2759|consen  157 YKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDE-YRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAE  235 (442)
T ss_pred             HHHHHHHHHhccCCCchHHHHHHHHHHHhcCcc-hhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHH
Confidence            12334445554 677888899999999987765 788888888888888888 455577899999999999998875444


Q ss_pred             hhhHhhhHHHHHHhhccC-ChhHHHHHHHHHHHhccCCc------HHHHHHHHhCcHHHHHHhcCC--CCchhHhHHHHH
Q 013228          161 FDQVRPALPALAQLVHSN-DKEVMTDACRALFYLSEGTN------DEIQAVIEAGVCPRLVELLGH--PSPSVLTRALQT  231 (447)
Q Consensus       161 ~~~~~~~l~~l~~ll~~~-~~~v~~~al~~l~~l~~~~~------~~~~~~~~~~~~~~L~~lL~~--~~~~v~~~a~~~  231 (447)
                      .....+.++.|...+++. .++|..-++.++.|+....+      .....++..++.+.+-.+...  .++++....-..
T Consensus       236 ~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L  315 (442)
T KOG2759|consen  236 KLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFL  315 (442)
T ss_pred             HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHH
Confidence            444578899999999865 68888999999999997764      222345555655555444432  444433222111


Q ss_pred             HH-------HhhcCCh-----------------------hhHHHHHh--cCChHHHHHhhccCCchhHHHHHHHHHHHHh
Q 013228          232 VV-------NIAAGDD-----------------------FQTQCIIN--CGALPYLLGLLIHNHKKSIKTDACWTISNIT  279 (447)
Q Consensus       232 l~-------~l~~~~~-----------------------~~~~~~~~--~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~  279 (447)
                      -.       .++..++                       +....+.+  ..++..|+++|.++.++.+-.-||.-++...
T Consensus       316 ~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~V  395 (442)
T KOG2759|consen  316 TEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYV  395 (442)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHH
Confidence            11       1222111                       11122222  2468899999998867888999999999999


Q ss_pred             cCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcC
Q 013228          280 AGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATF  322 (447)
Q Consensus       280 ~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~  322 (447)
                      +..|+....+.+.|+=+.++++++++|++||..|+.|+..+..
T Consensus       396 r~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  396 RHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV  438 (442)
T ss_pred             HhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence            9989999889999999999999999999999999999887754

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.24  E-value=3e-08  Score=87.48  Aligned_cols=322  Identities=15%  Similarity=0.153  Sum_probs=218.4

Q ss_pred             ChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCChhHHHHH------HhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCC
Q 013228           83 AVPIFVKLLAS-PSDDIREQAVCALGNVAADSARCRDLV------LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAG  155 (447)
Q Consensus        83 ~i~~L~~ll~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~------~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  155 (447)
                      .+.+++.+++. ..++..+.++..+.-+-..++.....+      .....-.+.+.+| ...+.-+...+.++++.++..
T Consensus        66 ~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll-~r~d~~iv~~~~~Ils~la~~  144 (442)
T KOG2759|consen   66 YVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLL-NRQDTFIVEMSFRILSKLACF  144 (442)
T ss_pred             HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHH-hcCChHHHHHHHHHHHHHHHh
Confidence            45667777765 345666666666665554443222221      1223356777888 566667777799999999887


Q ss_pred             CCCCChhhH-hhhHHHHHHhhcc-CChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC--CCchhHhHHHHH
Q 013228          156 KPKPIFDQV-RPALPALAQLVHS-NDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH--PSPSVLTRALQT  231 (447)
Q Consensus       156 ~~~~~~~~~-~~~l~~l~~ll~~-~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~--~~~~v~~~a~~~  231 (447)
                      .+....... .-....+...+++ .+..-..-+.+||..+...++.+. .++...++..++..+.+  .+..++...+.|
T Consensus       145 g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~-~~v~adg~~~l~~~l~s~~~~~QlQYqsifc  223 (442)
T KOG2759|consen  145 GNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRY-AFVIADGVSLLIRILASTKCGFQLQYQSIFC  223 (442)
T ss_pred             ccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhh-eeeecCcchhhHHHHhccCcchhHHHHHHHH
Confidence            644333322 2233445555655 567777788889999988777664 46667777888888733  456788889999


Q ss_pred             HHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCH------HHHHHHHHcCChHHHHHHHhc-
Q 013228          232 VVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNS------EHIQAVIDAGLIGPLVNLLQN-  304 (447)
Q Consensus       232 l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~------~~~~~l~~~~~~~~L~~~l~~-  304 (447)
                      ++-|+... ...+.+...+.++.|.+++++....+|-+-.+.++.|++...+      +....++..++.+.+-.+-+. 
T Consensus       224 iWlLtFn~-~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rk  302 (442)
T KOG2759|consen  224 IWLLTFNP-HAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERK  302 (442)
T ss_pred             HHHhhcCH-HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcC
Confidence            99888744 4556667778999999999877678899999999999998653      344455666666655555443 


Q ss_pred             -CchhHHHHHHHH-------HHHhcCC--------------C--------CHHHHHHHHHc--CChHHHHhhccCC-CHH
Q 013228          305 -AEFDIKNWAARA-------ISNATFG--------------G--------THEQIKYLVRE--GCIKPLCDLLLCA-DPE  351 (447)
Q Consensus       305 -~~~~v~~~a~~a-------L~~l~~~--------------~--------~~~~~~~l~~~--~~l~~L~~ll~~~-~~~  351 (447)
                       +|+++....-..       ...++..              +        -.++...|.++  .++..|+.+|+.. ||.
T Consensus       303 ysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~  382 (442)
T KOG2759|consen  303 YSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPI  382 (442)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCc
Confidence             355543322211       1112211              0        12344555544  3588889999875 578


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 013228          352 IVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWC  420 (447)
Q Consensus       352 ~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  420 (447)
                      +...|+.=+..+++.-+..             ...+...||-+.+.+|++|++++|+..|..++.++..
T Consensus       383 iL~VAc~DIge~Vr~yP~g-------------k~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  383 ILCVACHDIGEYVRHYPEG-------------KAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV  438 (442)
T ss_pred             eeehhhhhHHHHHHhCchH-------------hHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence            8888888899998876553             6889999999999999999999999999999888653

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=6.2e-09  Score=90.51  Aligned_cols=184  Identities=16%  Similarity=0.180  Sum_probs=154.1

Q ss_pred             CHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHH
Q 013228           53 YPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQ  132 (447)
Q Consensus        53 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~  132 (447)
                      +.+-++.|+.-|..++. +-++...++..|+...++.++.+++..+|..|+|+++..+..+|..++.+++.++++.|+..
T Consensus        96 ~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~  174 (342)
T KOG2160|consen   96 DLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI  174 (342)
T ss_pred             CHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence            37788999999999998 67888899999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccchhHHHHHHHHHHHhcCCCCCCChhhH-hhhHHHHHHhhcc--CChhHHHHHHHHHHHhccCCcHHHHHHHHhCc
Q 013228          133 LNKHAKLSMLRIATWTLSNFCAGKPKPIFDQV-RPALPALAQLVHS--NDKEVMTDACRALFYLSEGTNDEIQAVIEAGV  209 (447)
Q Consensus       133 l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~l~~l~~ll~~--~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~  209 (447)
                      +..+.+..++..|+.+++.+.++.+....... .++...|...+++  .+...+..++..+..+..........+...++
T Consensus       175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f  254 (342)
T KOG2160|consen  175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF  254 (342)
T ss_pred             HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence            98777788899999999999999854444433 5668899999998  56788888999999999665444444445566


Q ss_pred             HHHHHHhcCCCCchhHhHHHHHHHHhhc
Q 013228          210 CPRLVELLGHPSPSVLTRALQTVVNIAA  237 (447)
Q Consensus       210 ~~~L~~lL~~~~~~v~~~a~~~l~~l~~  237 (447)
                      ...+..+....+..+...++.++..+..
T Consensus       255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  255 QRVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             hHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            6667777777888888888777766553

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.16  E-value=1.5e-07  Score=88.37  Aligned_cols=214  Identities=15%  Similarity=0.163  Sum_probs=155.0

Q ss_pred             cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228            2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH   81 (447)
Q Consensus         2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (447)
                      +.+|++.-+-++..|...+.++.-.- ++..     ...+|.|+.-|.+++ |.|+..|+.+++.++..+|++.-.    
T Consensus       150 ~tLL~sskpYvRKkAIl~lykvFLkY-PeAl-----r~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPknyL~----  218 (877)
T KOG1059|consen  150 FTLLNSSKPYVRKKAILLLYKVFLKY-PEAL-----RPCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNYLQ----  218 (877)
T ss_pred             HHHHhcCchHHHHHHHHHHHHHHHhh-hHhH-----hhhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCccccc----
Confidence            45677888888888888888877552 2111     137899999999999 899999999999999988776443    


Q ss_pred             CChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHh--cCCCCC
Q 013228           82 GAVPIFVKLLAS-PSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNF--CAGKPK  158 (447)
Q Consensus        82 ~~i~~L~~ll~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l--~~~~~~  158 (447)
                       .-|.+.++|.. .+.=+....+..+++|+--.|.....     .++++.+++.+..-..+...+..++...  +.+. .
T Consensus       219 -LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s~g~-~  291 (877)
T KOG1059|consen  219 -LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSMSSGM-S  291 (877)
T ss_pred             -ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhccCC-C
Confidence             33677777754 34444556778888888766654433     5889999994443445555555554433  2221 2


Q ss_pred             CChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcC
Q 013228          159 PIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG  238 (447)
Q Consensus       159 ~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~  238 (447)
                      .......-++..|-.++.++|+.++.-++.+++.+....+...+.     .-+.++++|.+.++.+|..|+..+.-++..
T Consensus       292 d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~DkD~SIRlrALdLl~gmVsk  366 (877)
T KOG1059|consen  292 DHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDKDESIRLRALDLLYGMVSK  366 (877)
T ss_pred             CcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccCCchhHHHHHHHHHHHhhh
Confidence            344455678888888999999999999999999999666554332     247789999999999999999999888753

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=99.16  E-value=1.7e-08  Score=94.83  Aligned_cols=382  Identities=14%  Similarity=0.163  Sum_probs=229.0

Q ss_pred             ccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCC-HHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228            3 AGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDY-PQLQFEAAWALKNIVSGTSEDTKVVIDH   81 (447)
Q Consensus         3 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (447)
                      .-+.++.+..+...+....++.+.-+......-.+...+..++..++.++. ..+......++.+-...  ..+..  -.
T Consensus       723 ~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~--r~kpy--lp  798 (1172)
T KOG0213|consen  723 LDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGG--RVKPY--LP  798 (1172)
T ss_pred             hhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhh--ccccc--hH
Confidence            345666676777777777776655323333333344455556666655542 23333333333332221  00111  11


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHH--HHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCC-CC
Q 013228           82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRD--LVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK-PK  158 (447)
Q Consensus        82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~--~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~  158 (447)
                      -++..++..|.++++.+|++++..++.++.--..+.+  .+...|.  .|.+.| ....+++.-..+.++..++..- -.
T Consensus       799 qi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl-geeypEvLgsILgAikaI~nvigm~  875 (1172)
T KOG0213|consen  799 QICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL-GEEYPEVLGSILGAIKAIVNVIGMT  875 (1172)
T ss_pred             HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc-CcccHHHHHHHHHHHHHHHHhcccc
Confidence            2456778889999999999999999999743332322  2222222  244555 5667788777777666665432 11


Q ss_pred             CChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcC
Q 013228          159 PIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG  238 (447)
Q Consensus       159 ~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~  238 (447)
                      ....-..+++|.|...|++...+++.+++..++.++...++....--=..+-=-|+.+|...+..+|+.|..+++.++..
T Consensus       876 km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iaka  955 (1172)
T KOG0213|consen  876 KMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKA  955 (1172)
T ss_pred             ccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Confidence            22223478999999999999999999999999999977665322100012233466677778889999999988888753


Q ss_pred             C--hhhHHHHHh-----------------------c---CChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 013228          239 D--DFQTQCIIN-----------------------C---GALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVI  290 (447)
Q Consensus       239 ~--~~~~~~~~~-----------------------~---~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~  290 (447)
                      -  .+....+++                       +   .++|.|+.=...+ +..|+.-...+++.+.....+.....+
T Consensus       956 IGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtP-e~nVQnGVLkalsf~FeyigemskdYi 1034 (1172)
T KOG0213|consen  956 IGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTP-EANVQNGVLKALSFMFEYIGEMSKDYI 1034 (1172)
T ss_pred             cCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCc-hhHHHHhHHHHHHHHHHHHHHHhhhHH
Confidence            2  222222221                       1   2344454444556 677777777777776542222111111


Q ss_pred             HcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhc-------cCCCHHHHHHHHHHHHHH
Q 013228          291 DAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLL-------LCADPEIVTVFLKGLEKI  363 (447)
Q Consensus       291 ~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll-------~~~~~~~~~~a~~~l~~l  363 (447)
                       .-+.|.|-+.|.+.|..-|+.|+.++..++.+..        -.|..+.++.+|       -+..|.++....+++..+
T Consensus      1035 -yav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~--------g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~ 1105 (1172)
T KOG0213|consen 1035 -YAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP--------GTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGL 1105 (1172)
T ss_pred             -HHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC--------CcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHH
Confidence             2267777788888899999999999999988631        123344444444       345667776666665554


Q ss_pred             HHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 013228          364 LKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWCG  421 (447)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  421 (447)
                      -.                    .+-..-.++.+.+-+-|+...|++..-.+++.++..
T Consensus      1106 r~--------------------~Lg~~~~~~Y~~QGLFHParkVR~~yw~vyn~my~~ 1143 (1172)
T KOG0213|consen 1106 RV--------------------ALGPQAMLKYCLQGLFHPARKVRKRYWTVYNSMYHG 1143 (1172)
T ss_pred             HH--------------------HhchHHHHHHHHHhccCcHHHHHHHHHHHHHhHhhc
Confidence            32                    222223346666667788899998888888876643

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.14  E-value=2.4e-09  Score=96.46  Aligned_cols=227  Identities=20%  Similarity=0.250  Sum_probs=158.3

Q ss_pred             hHHHHHhhC--CCCHHHHHHHHHHHHHhhcCChhHHHHHHh------cCCHHHHHHHhccccchhHHHHHHHHHHHhcCC
Q 013228           84 VPIFVKLLA--SPSDDIREQAVCALGNVAADSARCRDLVLS------EEALIPLLTQLNKHAKLSMLRIATWTLSNFCAG  155 (447)
Q Consensus        84 i~~L~~ll~--~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~------~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  155 (447)
                      ...++.+|+  ++++++.+.++..+..+..+.+...+.+..      .....+++.++ ..+|..+...++..+..+...
T Consensus        57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~~  135 (312)
T PF03224_consen   57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLL-DRNDSFIQLKAAFILTSLLSQ  135 (312)
T ss_dssp             -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH--S-SSHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHc
Confidence            445555554  368999999999999999888766665554      23678888877 677999999999999999988


Q ss_pred             CCCCChhhHhhhHHHHHHhhcc----CChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhc-----CC--CCchh
Q 013228          156 KPKPIFDQVRPALPALAQLVHS----NDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELL-----GH--PSPSV  224 (447)
Q Consensus       156 ~~~~~~~~~~~~l~~l~~ll~~----~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL-----~~--~~~~v  224 (447)
                      .+........+.++.++.++.+    ++.+++..++.++.++...... ...+.+.++++.+..++     .+  ....+
T Consensus       136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~-R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql  214 (312)
T PF03224_consen  136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEY-RQVFWKSNGVSPLFDILRKQATNSNSSGIQL  214 (312)
T ss_dssp             TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHH-HHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred             CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchh-HHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence            7666655445666777766654    5667788999999999965554 46688899999999999     22  34567


Q ss_pred             HhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHH-HHHHHHHcCChHHHHHHHh
Q 013228          225 LTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSE-HIQAVIDAGLIGPLVNLLQ  303 (447)
Q Consensus       225 ~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~-~~~~l~~~~~~~~L~~~l~  303 (447)
                      +..++.++|-++. ++.....+.+.++++.+.++++....+++.+-+..++.|++...++ ....++..|+++.+-.+..
T Consensus       215 ~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~  293 (312)
T PF03224_consen  215 QYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE  293 (312)
T ss_dssp             HHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred             HHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence            8889999998887 4456677888889999999998776889999999999999985543 6777778777776555554


Q ss_pred             c--CchhHHHHH
Q 013228          304 N--AEFDIKNWA  313 (447)
Q Consensus       304 ~--~~~~v~~~a  313 (447)
                      .  +|+++....
T Consensus       294 rk~~Dedl~edl  305 (312)
T PF03224_consen  294 RKWSDEDLTEDL  305 (312)
T ss_dssp             S--SSHHHHHHH
T ss_pred             CCCCCHHHHHHH
Confidence            3  466665543

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.11  E-value=8.4e-09  Score=92.92  Aligned_cols=227  Identities=15%  Similarity=0.160  Sum_probs=161.8

Q ss_pred             HHHHHHHhccc-cchhHHHHHHHHHHHhcCCCCCCChhhHh-------hhHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 013228          126 LIPLLTQLNKH-AKLSMLRIATWTLSNFCAGKPKPIFDQVR-------PALPALAQLVHSNDKEVMTDACRALFYLSEGT  197 (447)
Q Consensus       126 l~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-------~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~  197 (447)
                      ...++.+|..- ++.++.++.+..+..+....+........       .....+++++..+|..+...++..+..+....
T Consensus        57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~  136 (312)
T PF03224_consen   57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG  136 (312)
T ss_dssp             -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence            45556666555 78899999999999999888644444332       24566778889999999999999999999766


Q ss_pred             cHHHHHHHHhCcHHHHHHhcCC----CCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhh------ccCCchhH
Q 013228          198 NDEIQAVIEAGVCPRLVELLGH----PSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLL------IHNHKKSI  267 (447)
Q Consensus       198 ~~~~~~~~~~~~~~~L~~lL~~----~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l------~~~~~~~v  267 (447)
                      +....... .+.++.++..+.+    ++..++..++.++.++.. .+..+..+.+.++++.+..++      .++....+
T Consensus       137 ~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql  214 (312)
T PF03224_consen  137 PKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL  214 (312)
T ss_dssp             TT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred             CccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence            55433211 3556667666644    445677889999999986 555778889999999999999      44447788


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc-CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcc
Q 013228          268 KTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQN-AEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLL  346 (447)
Q Consensus       268 ~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~  346 (447)
                      ..+++.+++.++.. ++....+.+.++++.|+++++. ..+++.+-+..++.|+...........++..|+++.+..+..
T Consensus       215 ~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~  293 (312)
T PF03224_consen  215 QYQALLCLWLLSFE-PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE  293 (312)
T ss_dssp             HHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred             HHHHHHHHHHHhcC-HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence            89999999999664 6778888888899999999994 578999999999999999876557888888887777777665


Q ss_pred             C--CCHHHHHH
Q 013228          347 C--ADPEIVTV  355 (447)
Q Consensus       347 ~--~~~~~~~~  355 (447)
                      .  .|+++.+.
T Consensus       294 rk~~Dedl~ed  304 (312)
T PF03224_consen  294 RKWSDEDLTED  304 (312)
T ss_dssp             S--SSHHHHHH
T ss_pred             CCCCCHHHHHH
Confidence            4  68887765

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.10  E-value=4.4e-07  Score=86.14  Aligned_cols=309  Identities=17%  Similarity=0.190  Sum_probs=225.0

Q ss_pred             HHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCC-CCHHHHHHHHHHHHHHcCCCh------hh--------
Q 013228           10 NNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMRE-DYPQLQFEAAWALKNIVSGTS------ED--------   74 (447)
Q Consensus        10 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~-~~~~v~~~a~~~L~~l~~~~~------~~--------   74 (447)
                      .+-|+.|++.|..++..    ++..+.. .+++.|++.|+.+ .++++...++.++.++..+.+      +.        
T Consensus        37 ~eDRR~A~rgLKa~srk----YR~~Vga-~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~  111 (970)
T KOG0946|consen   37 LEDRRDAVRGLKAFSRK----YREEVGA-QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGL  111 (970)
T ss_pred             hhhHHHHHHHHHHHHHH----HHHHHHH-cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHH
Confidence            56788888888887753    3444444 4688888888654 348999999999999887442      11        


Q ss_pred             --HHH-HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-hhHHHHHHhc-CCHHHHHHHhccccchhHHHHHHHHH
Q 013228           75 --TKV-VIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADS-ARCRDLVLSE-EALIPLLTQLNKHAKLSMLRIATWTL  149 (447)
Q Consensus        75 --~~~-~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~-~~~~~~~~~~-~~l~~l~~~l~~~~~~~~~~~a~~~L  149 (447)
                        .+. +...+.|..++..+...+..+|..++..+.++.... .+.++.+... -++..++.+| .+..+.++-.+...|
T Consensus       112 ~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL-~DsrE~IRNe~iLlL  190 (970)
T KOG0946|consen  112 WIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL-RDSREPIRNEAILLL  190 (970)
T ss_pred             HHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH-hhhhhhhchhHHHHH
Confidence              122 334588999999999999999999999999987544 4556665543 5799999999 677777888899999


Q ss_pred             HHhcCCCCCCChhhH-hhhHHHHHHhhccC---C-hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC---CC
Q 013228          150 SNFCAGKPKPIFDQV-RPALPALAQLVHSN---D-KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH---PS  221 (447)
Q Consensus       150 ~~l~~~~~~~~~~~~-~~~l~~l~~ll~~~---~-~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~---~~  221 (447)
                      ..++++.+..+.... .+++..|+.++...   | .-|...|+..+.|+..+...+...+.+.+.+|.|.++|..   .+
T Consensus       191 ~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d  270 (970)
T KOG0946|consen  191 SELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGD  270 (970)
T ss_pred             HHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccC
Confidence            999999866655544 88999999999743   3 3578899999999998877777888899999999988843   22


Q ss_pred             -----chh-----HhHHHHHHHHhhcCCh------hhHHHHHhcCChHHHHHhhccC-CchhHHHHHHHHHHHHhcCCHH
Q 013228          222 -----PSV-----LTRALQTVVNIAAGDD------FQTQCIINCGALPYLLGLLIHN-HKKSIKTDACWTISNITAGNSE  284 (447)
Q Consensus       222 -----~~v-----~~~a~~~l~~l~~~~~------~~~~~~~~~~~l~~l~~~l~~~-~~~~v~~~a~~~l~nl~~~~~~  284 (447)
                           |..     ...++.++..++.-..      ...+.+..++++..|..++.++ -..+++.++.-+++++.+++..
T Consensus       271 ~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~  350 (970)
T KOG0946|consen  271 GEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNAR  350 (970)
T ss_pred             cccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchH
Confidence                 221     2335566666653211      2234566788999999998876 3578999999999999998877


Q ss_pred             HHHHHHHcC------ChH----HHHHHHhc-CchhHHHHHHHHHHHhcCCC
Q 013228          285 HIQAVIDAG------LIG----PLVNLLQN-AEFDIKNWAARAISNATFGG  324 (447)
Q Consensus       285 ~~~~l~~~~------~~~----~L~~~l~~-~~~~v~~~a~~aL~~l~~~~  324 (447)
                      +...+.+..      -.|    .++.+..+ ..+..|..+.+++..+....
T Consensus       351 nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN  401 (970)
T KOG0946|consen  351 NQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDN  401 (970)
T ss_pred             HHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcc
Confidence            766666421      122    23333333 36788888888888887754

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.08  E-value=2.9e-07  Score=86.46  Aligned_cols=275  Identities=12%  Similarity=0.145  Sum_probs=192.0

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHH
Q 013228           39 GVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRD  118 (447)
Q Consensus        39 ~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~  118 (447)
                      ++-+-++.+|++.. +-+|..|+..+..+.-..|+..+     ..++.|..-|+++|+.++.+|+.+++.|++.+|... 
T Consensus       144 DLa~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny-  216 (877)
T KOG1059|consen  144 DLADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY-  216 (877)
T ss_pred             HHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc-
Confidence            34567788999999 89999999999999876666443     357999999999999999999999999998877531 


Q ss_pred             HHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCC-hhHHHHHHHHHH--Hhcc
Q 013228          119 LVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSND-KEVMTDACRALF--YLSE  195 (447)
Q Consensus       119 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~-~~v~~~al~~l~--~l~~  195 (447)
                       +   ...|.+..+|.++++.=+.-..+..+++|+--.|.    ....+++.+..++++.. .++...++.++.  +++.
T Consensus       217 -L---~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPR----LgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~  288 (877)
T KOG1059|consen  217 -L---QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR----LGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSS  288 (877)
T ss_pred             -c---cccHHHHHHHhccCCCeehHHHHHHHhhccccCch----hhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence             1   23566677776666665666677777777754433    34667888888888664 566777776653  3443


Q ss_pred             CCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHH
Q 013228          196 GTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTI  275 (447)
Q Consensus       196 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l  275 (447)
                      +.++....+.  -.++.|-.++.+.++..+.-++.+++.+...++.....     --+.++++|.+. +..+|..|.-.+
T Consensus       289 g~~d~~asiq--LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~Dk-D~SIRlrALdLl  360 (877)
T KOG1059|consen  289 GMSDHSASIQ--LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDK-DESIRLRALDLL  360 (877)
T ss_pred             CCCCcHHHHH--HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccC-CchhHHHHHHHH
Confidence            3222222111  24788888899999999999999999999888755443     345789999998 999999999988


Q ss_pred             HHHhcCCHHHHHHHHHcCChHHHHHHHhc-CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhc
Q 013228          276 SNITAGNSEHIQAVIDAGLIGPLVNLLQN-AEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLL  345 (447)
Q Consensus       276 ~nl~~~~~~~~~~l~~~~~~~~L~~~l~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll  345 (447)
                      .-+...  +++..     ++..|+..+.. +....|.+.+.-+..+|...+..+..-|-.  .+..|+++.
T Consensus       361 ~gmVsk--kNl~e-----IVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEW--YlsVlveLa  422 (877)
T KOG1059|consen  361 YGMVSK--KNLME-----IVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEW--YLSVLVELA  422 (877)
T ss_pred             HHHhhh--hhHHH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHH--HHHHHHHHH
Confidence            877553  44444     34445555543 344777777777777776554444433332  344455544

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.08  E-value=8.3e-08  Score=91.17  Aligned_cols=188  Identities=18%  Similarity=0.241  Sum_probs=117.0

Q ss_pred             hhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHH
Q 013228          166 PALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQC  245 (447)
Q Consensus       166 ~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~  245 (447)
                      -++..|-++|.+.|..++.-++..|......++...+..     =..++.+|++++..+++.|+..+..+...+.  ...
T Consensus       313 lainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrH-----r~tIleCL~DpD~SIkrralELs~~lvn~~N--v~~  385 (866)
T KOG1062|consen  313 LAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRH-----RSTILECLKDPDVSIKRRALELSYALVNESN--VRV  385 (866)
T ss_pred             HHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHH-----HHHHHHHhcCCcHHHHHHHHHHHHHHhcccc--HHH
Confidence            345567777777788888888888887776665543322     2567889999999999999999888886443  222


Q ss_pred             HHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc-CCHHHHHHH-------------HHcCChHHHHHHHhcC------
Q 013228          246 IINCGALPYLLGLLIHNHKKSIKTDACWTISNITA-GNSEHIQAV-------------IDAGLIGPLVNLLQNA------  305 (447)
Q Consensus       246 ~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l-------------~~~~~~~~L~~~l~~~------  305 (447)
                           .+..++.+|.+. +++.+...+.-+..++. ..|+.+..+             +...++..++.++.+.      
T Consensus       386 -----mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~  459 (866)
T KOG1062|consen  386 -----MVKELLEFLESS-DEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHE  459 (866)
T ss_pred             -----HHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhh
Confidence                 345688888887 88888887777777665 233322221             1233455566655543      


Q ss_pred             -------------------chhHHHHHHHHHHHhc---CCC-CHHHHHHHHHcCChHHHHhhccC--CCHHHHHHHHHHH
Q 013228          306 -------------------EFDIKNWAARAISNAT---FGG-THEQIKYLVREGCIKPLCDLLLC--ADPEIVTVFLKGL  360 (447)
Q Consensus       306 -------------------~~~v~~~a~~aL~~l~---~~~-~~~~~~~l~~~~~l~~L~~ll~~--~~~~~~~~a~~~l  360 (447)
                                         .+.+.+.|.|+|+.-.   .++ ..+......+..++..|...+.+  .+..++.+++.++
T Consensus       460 y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al  539 (866)
T KOG1062|consen  460 YAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTAL  539 (866)
T ss_pred             HHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence                               2334555666665432   111 11111122234567777777755  4567888888888


Q ss_pred             HHHHHh
Q 013228          361 EKILKV  366 (447)
Q Consensus       361 ~~l~~~  366 (447)
                      .+|...
T Consensus       540 ~KLSsr  545 (866)
T KOG1062|consen  540 LKLSSR  545 (866)
T ss_pred             HHHHhh
Confidence            888653

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.05  E-value=3.2e-07  Score=87.28  Aligned_cols=361  Identities=14%  Similarity=0.118  Sum_probs=195.7

Q ss_pred             ccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCCh
Q 013228            5 VWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAV   84 (447)
Q Consensus         5 l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i   84 (447)
                      |++++.-++--|+.+|.++++.+       ++ ..+.|.+.+++++++ +-+|..|+.|...+....|+....+     +
T Consensus       116 L~s~nq~vVglAL~alg~i~s~E-------ma-rdlapeVe~Ll~~~~-~~irKKA~Lca~r~irK~P~l~e~f-----~  181 (866)
T KOG1062|consen  116 LNSSNQYVVGLALCALGNICSPE-------MA-RDLAPEVERLLQHRD-PYIRKKAALCAVRFIRKVPDLVEHF-----V  181 (866)
T ss_pred             ccCCCeeehHHHHHHhhccCCHH-------Hh-HHhhHHHHHHHhCCC-HHHHHHHHHHHHHHHHcCchHHHHh-----h
Confidence            44555555555555555554431       11 124555566666666 6666666666666665555544333     3


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcc--------------ccchhHHHHHHHHHH
Q 013228           85 PIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNK--------------HAKLSMLRIATWTLS  150 (447)
Q Consensus        85 ~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~--------------~~~~~~~~~a~~~L~  150 (447)
                      +...++|.+.+..+...++..+..+|..++..-..+.+  .++.++..|++              -+|+-++...+..|.
T Consensus       182 ~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLr  259 (866)
T KOG1062|consen  182 IAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLR  259 (866)
T ss_pred             HHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHH
Confidence            44555555555555555566666666544432222221  34444444421              124445555666666


Q ss_pred             HhcCCCCCCChhhHhhhHHHHHHhhccC---ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhH
Q 013228          151 NFCAGKPKPIFDQVRPALPALAQLVHSN---DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTR  227 (447)
Q Consensus       151 ~l~~~~~~~~~~~~~~~l~~l~~ll~~~---~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~  227 (447)
                      -+-++.+ .....+..++..+..-..++   -..+...+..++..+-..+.-+.      -++..|-++|.+++..+|.-
T Consensus       260 iLGq~d~-daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~Lrv------lainiLgkFL~n~d~NirYv  332 (866)
T KOG1062|consen  260 ILGQNDA-DASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRV------LAINILGKFLLNRDNNIRYV  332 (866)
T ss_pred             HhcCCCc-cHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHH------HHHHHHHHHhcCCccceeee
Confidence            5555542 11222222222222211111   13455556666655544333221      13566777788888888888


Q ss_pred             HHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCch
Q 013228          228 ALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEF  307 (447)
Q Consensus       228 a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~  307 (447)
                      |+..|......++...+.     -=..++++|+++ |..+|+.|...+-.+...  .++..     ++..|+.+|.+.++
T Consensus       333 aLn~L~r~V~~d~~avqr-----Hr~tIleCL~Dp-D~SIkrralELs~~lvn~--~Nv~~-----mv~eLl~fL~~~d~  399 (866)
T KOG1062|consen  333 ALNMLLRVVQQDPTAVQR-----HRSTILECLKDP-DVSIKRRALELSYALVNE--SNVRV-----MVKELLEFLESSDE  399 (866)
T ss_pred             ehhhHHhhhcCCcHHHHH-----HHHHHHHHhcCC-cHHHHHHHHHHHHHHhcc--ccHHH-----HHHHHHHHHHhccH
Confidence            888888877766643321     223588899999 999999999888777553  33333     45668999998899


Q ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhh-hhhhhhhhhcccccHHHHH
Q 013228          308 DIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVG-EAEKNMDIAIGDVNQYAQL  386 (447)
Q Consensus       308 ~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~~~~~~~~  386 (447)
                      +.+...+.-+..++..-.|+.+ +     .++.+...+.....-+...+...+..++..+ .....     +....+...
T Consensus       400 ~~k~~~as~I~~laEkfaP~k~-W-----~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~-----y~~~rLy~a  468 (866)
T KOG1062|consen  400 DFKADIASKIAELAEKFAPDKR-W-----HIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHE-----YAVLRLYLA  468 (866)
T ss_pred             HHHHHHHHHHHHHHHhcCCcch-h-----HHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhh-----HHHHHHHHH
Confidence            9999998888888875544332 2     2555666666554444444444455555443 11110     001111111


Q ss_pred             HHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 013228          387 VEEAEGLEKIENLRSHDNDEIHEKSVKILETYW  419 (447)
Q Consensus       387 i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  419 (447)
                      +.+.       .++.-+.+.+...|.|+|..|=
T Consensus       469 ~~~~-------~~~~is~e~l~qVa~W~IGEYG  494 (866)
T KOG1062|consen  469 LSED-------TLLDISQEPLLQVASWCIGEYG  494 (866)
T ss_pred             Hhhh-------hhhhhhhhhHHHHHHHHhhhhh
Confidence            1111       1233344566788899998875

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.02  E-value=1.5e-08  Score=92.30  Aligned_cols=315  Identities=17%  Similarity=0.135  Sum_probs=204.2

Q ss_pred             ccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhH
Q 013228           37 PFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARC  116 (447)
Q Consensus        37 ~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~  116 (447)
                      -++++++.+.++..++ ..++.-|++.+.|++.. .+......-..+...+.++..+.+..++ .++..+-.+..     
T Consensus        82 ~~~iv~Pv~~cf~D~d-~~vRyyACEsLYNiaKv-~k~~v~~~Fn~iFdvL~klsaDsd~~V~-~~aeLLdRLik-----  153 (675)
T KOG0212|consen   82 LEKIVPPVLNCFSDQD-SQVRYYACESLYNIAKV-AKGEVLVYFNEIFDVLCKLSADSDQNVR-GGAELLDRLIK-----  153 (675)
T ss_pred             HHHhhHHHHHhccCcc-ceeeeHhHHHHHHHHHH-hccCcccchHHHHHHHHHHhcCCccccc-cHHHHHHHHHH-----
Confidence            3568899999999999 79999999999999872 2222222233456677777776666666 34444544432     


Q ss_pred             HHHHHhcC---CHHHHHHHhc---cccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHH
Q 013228          117 RDLVLSEE---ALIPLLTQLN---KHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRAL  190 (447)
Q Consensus       117 ~~~~~~~~---~l~~l~~~l~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l  190 (447)
                       +.+.+..   -++.++.+|+   ...++..+...+.-+..+-..++.........+++.|+.+|.++.++++..+=.++
T Consensus       154 -dIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l  232 (675)
T KOG0212|consen  154 -DIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLL  232 (675)
T ss_pred             -HhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence             2222211   2444454443   44577788887777776665544444445588999999999999999986665555


Q ss_pred             HHhcc---CCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCch-h
Q 013228          191 FYLSE---GTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKK-S  266 (447)
Q Consensus       191 ~~l~~---~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~-~  266 (447)
                      ++...   .++..   +--...++.++..+.++++.++..|+..+..+..-.+.. -...-+|++..++.++.+. +. .
T Consensus       233 ~~fL~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~-~l~~~s~il~~iLpc~s~~-e~~~  307 (675)
T KOG0212|consen  233 SEFLAEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD-LLLYLSGILTAILPCLSDT-EEMS  307 (675)
T ss_pred             HHHHHHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc-hhhhhhhhhhhcccCCCCC-cccc
Confidence            54431   12111   112356788899999999999999988888887655433 2234457778888888776 44 3


Q ss_pred             HHHHHHHH---HHHHhcCCHHHHHHHHH-cCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHH
Q 013228          267 IKTDACWT---ISNITAGNSEHIQAVID-AGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLC  342 (447)
Q Consensus       267 v~~~a~~~---l~nl~~~~~~~~~~l~~-~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~  342 (447)
                      ++..+...   +..++. .+...+. ++ ..+++.+...+.++..+.|..+..-+..+-... +.+.-. -.......|.
T Consensus       308 i~~~a~~~n~~l~~l~s-~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~-p~ql~~-h~~~if~tLL  383 (675)
T KOG0212|consen  308 IKEYAQMVNGLLLKLVS-SERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKA-PGQLLV-HNDSIFLTLL  383 (675)
T ss_pred             HHHHHHHHHHHHHHHHh-hhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhC-cchhhh-hccHHHHHHH
Confidence            44444322   222222 1111112 33 236778888888888999988888887776653 222221 2345678888


Q ss_pred             hhccCCCHHHHHHHHHHHHHHHHhhhh
Q 013228          343 DLLLCADPEIVTVFLKGLEKILKVGEA  369 (447)
Q Consensus       343 ~ll~~~~~~~~~~a~~~l~~l~~~~~~  369 (447)
                      .-|.+.+.+++..++..+.+++.....
T Consensus       384 ~tLsd~sd~vvl~~L~lla~i~~s~~~  410 (675)
T KOG0212|consen  384 KTLSDRSDEVVLLALSLLASICSSSNS  410 (675)
T ss_pred             HhhcCchhHHHHHHHHHHHHHhcCccc
Confidence            899999999999999999999876443

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.97  E-value=2.6e-06  Score=79.38  Aligned_cols=343  Identities=15%  Similarity=0.093  Sum_probs=226.3

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 013228           40 VVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDL  119 (447)
Q Consensus        40 ~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~  119 (447)
                      ++..+..-+..+. +.+|.....++..+........    ...+.+.+.+++....-.-+..+.+.++.+..+..  -..
T Consensus        97 ~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~~~~~~----~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--i~~  169 (569)
T KOG1242|consen   97 IIEILLEELDTPS-KSVQRAVSTCLPPLVVLSKGLS----GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG--IES  169 (569)
T ss_pred             HHHHHHHhcCCCc-HHHHHHHHHHhhhHHHHhhccC----HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--Hhh
Confidence            5667777778888 8999988888877765222111    11245677788888888888899999999887653  345


Q ss_pred             HHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcH
Q 013228          120 VLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTND  199 (447)
Q Consensus       120 ~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~  199 (447)
                      +.+.+++..+...+....+..-++.+..+....+..-........-..+|.++.-+.+....++..+..+...+...-+.
T Consensus       170 ~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~  249 (569)
T KOG1242|consen  170 LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA  249 (569)
T ss_pred             hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc
Confidence            55667788888877433333333334444444444332333334456677777777788889998887777665543322


Q ss_pred             H-HHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHH
Q 013228          200 E-IQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNI  278 (447)
Q Consensus       200 ~-~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl  278 (447)
                      . .+     -+++.++.-+....|..+..++..++.++...+.+.. ..-..++|.+.+.|.+. .+++|+.+..++..+
T Consensus       250 ~aVK-----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT-~~evr~a~~~~l~~~  322 (569)
T KOG1242|consen  250 YAVK-----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDT-KPEVRKAGIETLLKF  322 (569)
T ss_pred             chhh-----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence            2 11     2344444444445889999999999999988876655 44458999999999999 999999999999999


Q ss_pred             hc--CCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCC--CCHHHHHHHHHcCChHHHHhhccCCCHHHHH
Q 013228          279 TA--GNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFG--GTHEQIKYLVREGCIKPLCDLLLCADPEIVT  354 (447)
Q Consensus       279 ~~--~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~--~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~  354 (447)
                      +.  .+++ ++.     ++|.|++.+..+...+ ..+...|+.=...  -++.....     .++.|.+-+...+..+..
T Consensus       323 ~svidN~d-I~~-----~ip~Lld~l~dp~~~~-~e~~~~L~~ttFV~~V~~psLal-----mvpiL~R~l~eRst~~kr  390 (569)
T KOG1242|consen  323 GSVIDNPD-IQK-----IIPTLLDALADPSCYT-PECLDSLGATTFVAEVDAPSLAL-----MVPILKRGLAERSTSIKR  390 (569)
T ss_pred             HHhhccHH-HHH-----HHHHHHHHhcCcccch-HHHHHhhcceeeeeeecchhHHH-----HHHHHHHHHhhccchhhh
Confidence            87  3434 221     6888888888655333 3344444322221  12222222     356666677777888889


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 013228          355 VFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWC  420 (447)
Q Consensus       355 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  420 (447)
                      .+..++.|++..-++.+.          ....+.  ..++.|........|+++..+.+++.....
T Consensus       391 ~t~~IidNm~~LveDp~~----------lapfl~--~Llp~lk~~~~d~~PEvR~vaarAL~~l~e  444 (569)
T KOG1242|consen  391 KTAIIIDNMCKLVEDPKD----------LAPFLP--SLLPGLKENLDDAVPEVRAVAARALGALLE  444 (569)
T ss_pred             hHHHHHHHHHHhhcCHHH----------HhhhHH--HHhhHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence            999999999987654332          122222  235777777777899999999999966554

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.92  E-value=9e-07  Score=81.18  Aligned_cols=351  Identities=17%  Similarity=0.142  Sum_probs=214.9

Q ss_pred             CCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHH
Q 013228            8 DDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIF   87 (447)
Q Consensus         8 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L   87 (447)
                      .+..+|+.|+.+|..-+-.-......+--..-++...++.-+.++ .+++..|..||..+..-..++...+.+.-.....
T Consensus       190 t~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d-~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt  268 (858)
T COG5215         190 TTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGND-EELQHAAFGCLNKIMMLYYKFMQSYMENALAALT  268 (858)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            446788888888877322110000000011124455566667778 8999999999999988677777777776666667


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHH----------------HhcCCHHHHHHHhcc------ccchhHHHHH
Q 013228           88 VKLLASPSDDIREQAVCALGNVAADSARCRDLV----------------LSEEALIPLLTQLNK------HAKLSMLRIA  145 (447)
Q Consensus        88 ~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~----------------~~~~~l~~l~~~l~~------~~~~~~~~~a  145 (447)
                      .+.+.++++++..+++...+.+|...-...-..                ...+++|.++.+|.+      +.+..+-..|
T Consensus       269 ~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA  348 (858)
T COG5215         269 GRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAA  348 (858)
T ss_pred             HHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhH
Confidence            778899999999999999999985332111110                112468888888854      2245566666


Q ss_pred             HHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhH
Q 013228          146 TWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVL  225 (447)
Q Consensus       146 ~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~  225 (447)
                      ..||.-++...   .......++..+-+-+++++..-++.+..+++.+...+......-+-...+|.+...+.++.--++
T Consensus       349 ~sCLqlfaq~~---gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk  425 (858)
T COG5215         349 SSCLQLFAQLK---GDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVK  425 (858)
T ss_pred             HHHHHHHHHHh---hhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehh
Confidence            66666665432   112334466666677788899999999999999997776543333334678888888888888899


Q ss_pred             hHHHHHHHHhhcCChhhHHHHHhcCChHHHHH-hhc--cCCchhHHHHHHHHHHHHhcCCHHHHH---HHHHcCChHHHH
Q 013228          226 TRALQTVVNIAAGDDFQTQCIINCGALPYLLG-LLI--HNHKKSIKTDACWTISNITAGNSEHIQ---AVIDAGLIGPLV  299 (447)
Q Consensus       226 ~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~-~l~--~~~~~~v~~~a~~~l~nl~~~~~~~~~---~l~~~~~~~~L~  299 (447)
                      ..++||++.++.+-+..   +-..+-++..+. .+.  .. .+.+....+|...|++.+-++...   .++ ..+.+.++
T Consensus       426 ~ttAwc~g~iad~va~~---i~p~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l-~~fY~ai~  500 (858)
T COG5215         426 STTAWCFGAIADHVAMI---ISPCGHLVLEVSASLIGLMD-CPFRSINCSWRKENLVDHIAKAVREVESFL-AKFYLAIL  500 (858)
T ss_pred             hHHHHHHHHHHHHHHHh---cCccccccHHHHHHHhhhhc-cchHHhhhHHHHHhHHHhhhhhhccccchh-HHHHHHHH
Confidence            99999999998654422   222232222221 111  12 467888999999999875333221   111 12333333


Q ss_pred             HHH----h--cCchhHHHHHHHHHHHhcCCCCHHHHHHHHH---------cCChHHHHhhccCCC----HHHHHHHHHHH
Q 013228          300 NLL----Q--NAEFDIKNWAARAISNATFGGTHEQIKYLVR---------EGCIKPLCDLLLCAD----PEIVTVFLKGL  360 (447)
Q Consensus       300 ~~l----~--~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~---------~~~l~~L~~ll~~~~----~~~~~~a~~~l  360 (447)
                      .-|    +  ..+...|..+..+|+.+...+.......+..         ...+..+-+.+..+|    .+++...++.|
T Consensus       501 ~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl  580 (858)
T COG5215         501 NALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVL  580 (858)
T ss_pred             HHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            322    2  2467788888999998887654333332221         011222233333333    25556666666


Q ss_pred             HHHHHhh
Q 013228          361 EKILKVG  367 (447)
Q Consensus       361 ~~l~~~~  367 (447)
                      ..+++..
T Consensus       581 ~aiir~~  587 (858)
T COG5215         581 EAIIRTR  587 (858)
T ss_pred             HHHHHhc
Confidence            6666543

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.89  E-value=1.2e-06  Score=80.47  Aligned_cols=343  Identities=14%  Similarity=0.100  Sum_probs=210.8

Q ss_pred             CCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHH
Q 013228            8 DDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIF   87 (447)
Q Consensus         8 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L   87 (447)
                      +++..-+.|..+|.-.+...+    +.+.+. ++..+-+-+.+++ ..-++.|+.+++.+..+..+....-+-..++|.+
T Consensus       340 DdWn~smaA~sCLqlfaq~~g----d~i~~p-Vl~FvEqni~~~~-w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i  413 (858)
T COG5215         340 DDWNPSMAASSCLQLFAQLKG----DKIMRP-VLGFVEQNIRSES-WANREAAVMAFGSVMHGPCEDCLTKIVPQALPGI  413 (858)
T ss_pred             cccchhhhHHHHHHHHHHHhh----hHhHHH-HHHHHHHhccCch-hhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHH
Confidence            445566666666665554321    111111 3333334566777 5788999999999988655555444445678888


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcc--ccchhHHHHHHHHHHHhcCCCCCCC---hh
Q 013228           88 VKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNK--HAKLSMLRIATWTLSNFCAGKPKPI---FD  162 (447)
Q Consensus        88 ~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~--~~~~~~~~~a~~~L~~l~~~~~~~~---~~  162 (447)
                      ...+.++.--++..++|+++.++.+-   ...+...+-++..++.+..  ...+....+++|...++..+-+...   ..
T Consensus       414 ~n~m~D~~l~vk~ttAwc~g~iad~v---a~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S  490 (858)
T COG5215         414 ENEMSDSCLWVKSTTAWCFGAIADHV---AMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVES  490 (858)
T ss_pred             HHhcccceeehhhHHHHHHHHHHHHH---HHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccc
Confidence            88888888889999999999998653   3444444545544443321  2345677889999999987652222   22


Q ss_pred             hHh----hhHHHHHHhhc--cCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHh-----------cCCCC----
Q 013228          163 QVR----PALPALAQLVH--SNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVEL-----------LGHPS----  221 (447)
Q Consensus       163 ~~~----~~l~~l~~ll~--~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~l-----------L~~~~----  221 (447)
                      ...    .++..|++...  .++...|..+..+|+.+....++....+. .|+.....+.           +...+    
T Consensus       491 ~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~-a~~~~~~~~kl~~~isv~~q~l~~eD~~~~  569 (858)
T COG5215         491 FLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDIL-AGFYDYTSKKLDECISVLGQILATEDQLLV  569 (858)
T ss_pred             hhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHH-HHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence            223    33333443322  34567788888888888765554332221 1232222222           22211    


Q ss_pred             chhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHH
Q 013228          222 PSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNL  301 (447)
Q Consensus       222 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~  301 (447)
                      .+++..-+..|..+.+..+...+. .+..++..++++|.+.+...+-.....++++++..-.+....... .++|.|.+.
T Consensus       570 ~elqSN~~~vl~aiir~~~~~ie~-v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~-~fiPyl~~a  647 (858)
T COG5215         570 EELQSNYIGVLEAIIRTRRRDIED-VEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYAS-KFIPYLTRA  647 (858)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCccc-HHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHH
Confidence            345666666666666544332221 122467788888988745566678888999997754454444444 499999999


Q ss_pred             HhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCC--HHHHHHHHHHHHHHH
Q 013228          302 LQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCAD--PEIVTVFLKGLEKIL  364 (447)
Q Consensus       302 l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~--~~~~~~a~~~l~~l~  364 (447)
                      ++..+..+...|...++.++..-+.+...+  .......|++++.++.  .++.-..+.++..+.
T Consensus       648 ln~~d~~v~~~avglvgdlantl~~df~~y--~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIA  710 (858)
T COG5215         648 LNCTDRFVLNSAVGLVGDLANTLGTDFNIY--ADVLMSSLVQCLSSEATHRDLKPAILSVFGDIA  710 (858)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhcChhhccccchHHHHHHHHHH
Confidence            988899999999999999987544433332  2346788999998753  355555555555554

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.88  E-value=7.3e-07  Score=84.91  Aligned_cols=336  Identities=16%  Similarity=0.158  Sum_probs=216.8

Q ss_pred             cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228            2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH   81 (447)
Q Consensus         2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (447)
                      ++.+...|-+.+.-.--++.+.+...  +.    ...++++.+++=..+++ +.+|..|++.++.+-.  +....     
T Consensus        55 vk~~~T~dlelKKlvyLYl~nYa~~~--P~----~a~~avnt~~kD~~d~n-p~iR~lAlrtm~~l~v--~~i~e-----  120 (734)
T KOG1061|consen   55 VKCMQTRDLELKKLVYLYLMNYAKGK--PD----LAILAVNTFLKDCEDPN-PLIRALALRTMGCLRV--DKITE-----  120 (734)
T ss_pred             HhhcccCCchHHHHHHHHHHHhhccC--ch----HHHhhhhhhhccCCCCC-HHHHHHHhhceeeEee--hHHHH-----
Confidence            45566667777777777777777653  11    11246777777777788 8999998888877655  22222     


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCC-CC
Q 013228           82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPK-PI  160 (447)
Q Consensus        82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~  160 (447)
                      .+..++.+.+++.++.+|..++.+..++-..++   +.+...|.+..|-.++ .++++.+..+|+.+|..+....+. ..
T Consensus       121 y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll-~D~~p~VVAnAlaaL~eI~e~~~~~~~  196 (734)
T KOG1061|consen  121 YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLL-SDSNPMVVANALAALSEIHESHPSVNL  196 (734)
T ss_pred             HHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHh-cCCCchHHHHHHHHHHHHHHhCCCCCc
Confidence            246789999999999999999999999976654   4566778888888888 688899999999999999987653 22


Q ss_pred             hhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCCh
Q 013228          161 FDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD  240 (447)
Q Consensus       161 ~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~  240 (447)
                      .......+..++..+..-++=-+...+.++.+-...++....     .++..+...|.+.+..+...+...+..+....+
T Consensus       197 ~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~  271 (734)
T KOG1061|consen  197 LELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE-----DICERLTPRLQHANSAVVLSAVKVILQLVKYLK  271 (734)
T ss_pred             ccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH-----HHHHHhhhhhccCCcceEeehHHHHHHHHHHHH
Confidence            233344555555555544444455555555555544432222     456788888888888888888888888776555


Q ss_pred             hhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHH-------------------------HHH-cC-
Q 013228          241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQA-------------------------VID-AG-  293 (447)
Q Consensus       241 ~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~-------------------------l~~-~~-  293 (447)
                      .....+. ...-+.++.++.+. . +++.-+..-+.-+....++....                         +.. .+ 
T Consensus       272 ~~~~~~~-~K~~~pl~tlls~~-~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl  348 (734)
T KOG1061|consen  272 QVNELLF-KKVAPPLVTLLSSE-S-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANL  348 (734)
T ss_pred             HHHHHHH-HHhcccceeeeccc-c-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHH
Confidence            4323222 24556666666655 3 44444333332222222221110                         000 11 


Q ss_pred             --ChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhh
Q 013228          294 --LIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAE  370 (447)
Q Consensus       294 --~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~  370 (447)
                        ++..+...-..-|.+..+++.+++++++......       .+.+..|.++++-....++..++..+..+++..++.
T Consensus       349 ~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-------~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~  420 (734)
T KOG1061|consen  349 AQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-------NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNK  420 (734)
T ss_pred             HHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-------hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCc
Confidence              2333333333457888999999999998854221       567888888888776666667777788888766554

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.88  E-value=2.8e-07  Score=87.66  Aligned_cols=293  Identities=16%  Similarity=0.136  Sum_probs=183.3

Q ss_pred             ccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCCh
Q 013228            5 VWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAV   84 (447)
Q Consensus         5 l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i   84 (447)
                      ..++++.++..|.+.+..+--.       .+. ..+...+.+.+++.+ +-+|..++-+..++-..+   .+.....|.+
T Consensus        95 ~~d~np~iR~lAlrtm~~l~v~-------~i~-ey~~~Pl~~~l~d~~-~yvRktaa~~vakl~~~~---~~~~~~~gl~  162 (734)
T KOG1061|consen   95 CEDPNPLIRALALRTMGCLRVD-------KIT-EYLCDPLLKCLKDDD-PYVRKTAAVCVAKLFDID---PDLVEDSGLV  162 (734)
T ss_pred             CCCCCHHHHHHHhhceeeEeeh-------HHH-HHHHHHHHHhccCCC-hhHHHHHHHHHHHhhcCC---hhhccccchh
Confidence            3456666666666555433221       111 225678888899999 899999999999887643   4567788999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhH
Q 013228           85 PIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQV  164 (447)
Q Consensus        85 ~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  164 (447)
                      +.|..++.+.++.+..+|+.+|..+....+...    .......++..+...-+.-....-+.++-.++.+.|... ...
T Consensus       163 ~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~----~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~-~ea  237 (734)
T KOG1061|consen  163 DALKDLLSDSNPMVVANALAALSEIHESHPSVN----LLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS-REA  237 (734)
T ss_pred             HHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCC----cccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc-hhH
Confidence            999999999999999999999999986654311    111233333333233333334445556667777665555 445


Q ss_pred             hhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHH
Q 013228          165 RPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQ  244 (447)
Q Consensus       165 ~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~  244 (447)
                      ..++..+...+.+.++.+...+...+.+........ ....-...-+.++.++.... .++.-+++-+.-+....+....
T Consensus       238 ~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~-~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~  315 (734)
T KOG1061|consen  238 EDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQV-NELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILK  315 (734)
T ss_pred             HHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHH-HHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHH
Confidence            677888888899999988888888888877544332 22333345666777776665 6666665555544433322111


Q ss_pred             HHH-------------hcCChHHHHHh----------------hccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCh
Q 013228          245 CII-------------NCGALPYLLGL----------------LIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLI  295 (447)
Q Consensus       245 ~~~-------------~~~~l~~l~~~----------------l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~  295 (447)
                      .-+             +..-++.+..+                -..- +.+..+.+++++++++..-++.      .+.+
T Consensus       316 ~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatev-D~~fvrkaIraig~~aik~e~~------~~cv  388 (734)
T KOG1061|consen  316 VEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEV-DVDFVRKAVRAIGRLAIKAEQS------NDCV  388 (734)
T ss_pred             hHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhh-CHHHHHHHHHHhhhhhhhhhhh------hhhH
Confidence            000             00111222221                1222 6677788999999998743331      5577


Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHHhcCC
Q 013228          296 GPLVNLLQNAEFDIKNWAARAISNATFG  323 (447)
Q Consensus       296 ~~L~~~l~~~~~~v~~~a~~aL~~l~~~  323 (447)
                      ..|+++++..-..+.+++...+..+...
T Consensus       389 ~~lLell~~~~~yvvqE~~vvi~dilRk  416 (734)
T KOG1061|consen  389 SILLELLETKVDYVVQEAIVVIRDILRK  416 (734)
T ss_pred             HHHHHHHhhcccceeeehhHHHHhhhhc
Confidence            7788888766556666677777777664

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=1.5e-05  Score=78.40  Aligned_cols=330  Identities=15%  Similarity=0.183  Sum_probs=220.3

Q ss_pred             HHHHHHHHHHHHHHccCCCCchhhh----hccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHH
Q 013228           11 NMQLEATTHIRKLLSNARSAPTEEV----IPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPI   86 (447)
Q Consensus        11 ~~~~~a~~~l~~l~~~~~~~~~~~~----~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~   86 (447)
                      .-...++.+|.++.+.+ ++....+    .--|.++.+..++.....+.++..|+.++.-+.. +.++...+...|.+..
T Consensus      1740 ~~v~m~LtAL~Nli~~n-PdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSAN-PDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTT 1817 (2235)
T ss_pred             HHHHHHHHHHHHHHhhC-cchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHH
Confidence            45667888999999874 3222221    2236788888888766558999999999988887 8899999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCC---CCCChhh
Q 013228           87 FVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK---PKPIFDQ  163 (447)
Q Consensus        87 L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~  163 (447)
                      |+.+|.+ -|..|+.++.+|..|++... ....-.+.|++..+..++-.......+..++..+..+..+.   |......
T Consensus      1818 LL~lLHS-~PS~R~~vL~vLYAL~S~~~-i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL 1895 (2235)
T KOG1789|consen 1818 LLTLLHS-QPSMRARVLDVLYALSSNGQ-IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITL 1895 (2235)
T ss_pred             HHHHHhc-ChHHHHHHHHHHHHHhcCcH-HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeeh
Confidence            9999976 57889999999999997766 44455577888899888877777888999999999998776   4433333


Q ss_pred             HhhhHH-----------HHHHhhcc--CChhH------HHHHHHHHHHhcc--------CC------cHHH---------
Q 013228          164 VRPALP-----------ALAQLVHS--NDKEV------MTDACRALFYLSE--------GT------NDEI---------  201 (447)
Q Consensus       164 ~~~~l~-----------~l~~ll~~--~~~~v------~~~al~~l~~l~~--------~~------~~~~---------  201 (447)
                      +...-.           ..++++..  .++++      +...-..+..+..        ++      +++.         
T Consensus      1896 ~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E 1975 (2235)
T KOG1789|consen 1896 IKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKE 1975 (2235)
T ss_pred             HHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccC
Confidence            322222           33334332  12221      2222222222221        00      0000         


Q ss_pred             --------HHHH-------------HhCcHHHHHHhcCCCCch--hHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHh
Q 013228          202 --------QAVI-------------EAGVCPRLVELLGHPSPS--VLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGL  258 (447)
Q Consensus       202 --------~~~~-------------~~~~~~~L~~lL~~~~~~--v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~  258 (447)
                              +.++             -.++++.++.++..+.+.  ....-..++..+.+..+...+.+-..|.+|.++..
T Consensus      1976 ~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~A 2055 (2235)
T KOG1789|consen 1976 CAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTA 2055 (2235)
T ss_pred             cccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHH
Confidence                    0011             113455556666544332  22223334445566677777777778999999999


Q ss_pred             hccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCh
Q 013228          259 LIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCI  338 (447)
Q Consensus       259 l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l  338 (447)
                      +... +..+-..+..+|..++.. .-....+.....+..++..+.. .+...--|+.+|..+......+.....+..|.+
T Consensus      2056 m~~~-n~s~P~SaiRVlH~Lsen-~~C~~AMA~l~~i~~~m~~mkK-~~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLv 2132 (2235)
T KOG1789|consen 2056 MCLQ-NTSAPRSAIRVLHELSEN-QFCCDAMAQLPCIDGIMKSMKK-QPSLMGLAAEALKRLMKRNTGELVAQMLKCGLV 2132 (2235)
T ss_pred             HHhc-CCcCcHHHHHHHHHHhhc-cHHHHHHhccccchhhHHHHHh-cchHHHHHHHHHHHHHHHhHHHHHHHHhccCcH
Confidence            9876 666668888899988664 3555566665566667776663 345556899999999886656666777788999


Q ss_pred             HHHHhhccC
Q 013228          339 KPLCDLLLC  347 (447)
Q Consensus       339 ~~L~~ll~~  347 (447)
                      +.|..+|++
T Consensus      2133 pyLL~LLd~ 2141 (2235)
T KOG1789|consen 2133 PYLLQLLDS 2141 (2235)
T ss_pred             HHHHHHhcc
Confidence            999999976

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=98.86  E-value=9e-07  Score=86.65  Aligned_cols=377  Identities=14%  Similarity=0.104  Sum_probs=243.7

Q ss_pred             cccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCC
Q 013228            4 GVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGA   83 (447)
Q Consensus         4 ~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~   83 (447)
                      +.+++++.++..++.-+.+++...    .......++++.+.++..... ..|++.|...+.++..-.....  =....+
T Consensus       245 lc~d~~~~Vr~~~a~~l~~~a~~~----~~~~~~s~v~~~~~~L~~Ddq-dsVr~~a~~~~~~l~~l~~~~~--d~~~~~  317 (759)
T KOG0211|consen  245 LCQDDTPMVRRAVASNLGNIAKVL----ESEIVKSEVLPTLIQLLRDDQ-DSVREAAVESLVSLLDLLDDDD--DVVKSL  317 (759)
T ss_pred             hccccchhhHHHHHhhhHHHHHHH----HHHHHHhhccHHHhhhhhcch-hhHHHHHHHHHHHHHHhcCCch--hhhhhh
Confidence            345667888888888888887653    225667789999999999888 7999999998888765221111  122245


Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhcC--------------------Chh-HHH-------------------HHHhc
Q 013228           84 VPIFVKLLASPSDDIREQAVCALGNVAAD--------------------SAR-CRD-------------------LVLSE  123 (447)
Q Consensus        84 i~~L~~ll~~~~~~i~~~a~~~L~~l~~~--------------------~~~-~~~-------------------~~~~~  123 (447)
                      .+.++...++++..++.........++..                    ... .+.                   .+...
T Consensus       318 ~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~  397 (759)
T KOG0211|consen  318 TESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDS  397 (759)
T ss_pred             hHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchh
Confidence            67777777777777776666555554421                    000 000                   00011


Q ss_pred             CCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHH
Q 013228          124 EALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQA  203 (447)
Q Consensus       124 ~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~  203 (447)
                      ..++.+-.+. .+.+..++...+..+..+.--.+  .........|.....+++.++.|+.+..+.+..+-...+..-..
T Consensus       398 ~ilp~~~~lv-~d~~~~vr~a~a~~~~~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~  474 (759)
T KOG0211|consen  398 SILPEVQVLV-LDNALHVRSALASVITGLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGIS  474 (759)
T ss_pred             hhhHHHHHHH-hcccchHHHHHhccccccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccch
Confidence            1112222222 34444444444444444332221  22234667788888899999999999887776555433332233


Q ss_pred             HHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCH
Q 013228          204 VIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNS  283 (447)
Q Consensus       204 ~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~  283 (447)
                      ......++.+..+-.+..++++....+.+..++....   ..+.+...-+.+...+.+. ...++..|+..+..++....
T Consensus       475 ~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l~~l~~~~G  550 (759)
T KOG0211|consen  475 TVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDH-VYSIREAAARNLPALVETFG  550 (759)
T ss_pred             hhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhh-HHHHHHHHHHHhHHHHHHhC
Confidence            4556678888888888889999999999988875333   2344444555566666666 77899999888888876321


Q ss_pred             HHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHH
Q 013228          284 EHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKI  363 (447)
Q Consensus       284 ~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l  363 (447)
                      .   .......++.++.+...++...|...+.++..++.....+.    .....++.+..+..+..++++..+++.|..+
T Consensus       551 ~---~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei----~~~~Llp~~~~l~~D~vanVR~nvak~L~~i  623 (759)
T KOG0211|consen  551 S---EWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI----TCEDLLPVFLDLVKDPVANVRINVAKHLPKI  623 (759)
T ss_pred             c---chhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH----HHHHHhHHHHHhccCCchhhhhhHHHHHHHH
Confidence            1   22233467778877777778899988888887776443333    2334689999999999999999999999999


Q ss_pred             HHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 013228          364 LKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILET  417 (447)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~  417 (447)
                      ...-...                ..+....+.++.|..+++.+++.+|..+...
T Consensus       624 ~~~L~~~----------------~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~  661 (759)
T KOG0211|consen  624 LKLLDES----------------VRDEEVLPLLETLSSDQELDVRYRAILAFGS  661 (759)
T ss_pred             HhhcchH----------------HHHHHHHHHHHHhccCcccchhHHHHHHHHH
Confidence            8764332                2234445777777778888887777665544

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.86  E-value=1.2e-06  Score=80.97  Aligned_cols=338  Identities=13%  Similarity=0.125  Sum_probs=212.0

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh--HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHH
Q 013228           40 VVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSED--TKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCR  117 (447)
Q Consensus        40 ~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~--~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~  117 (447)
                      ++...+++|+++. +.+|.+|+...+.++.--..+  ...+...|  ..|.+.+...++++.-..+.++..+..... ++
T Consensus       605 ivStiL~~L~~k~-p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~-~~  680 (975)
T COG5181         605 IVSTILKLLRSKP-PDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHR-FR  680 (975)
T ss_pred             HHHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhc-cc
Confidence            5566778889999 899999999888876521111  12233333  345666777889988887777777753221 11


Q ss_pred             HH-HHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhH-hhhHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 013228          118 DL-VLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQV-RPALPALAQLVHSNDKEVMTDACRALFYLSE  195 (447)
Q Consensus       118 ~~-~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~  195 (447)
                      .. -.-.+++|.+...| .+....+..+....+..+|...|....... -.+-=.|+.+|.+.+.+++..|...++.++.
T Consensus       681 ~mqpPi~~ilP~ltPIL-rnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~  759 (975)
T COG5181         681 SMQPPISGILPSLTPIL-RNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR  759 (975)
T ss_pred             ccCCchhhccccccHhh-hhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence            00 01246788888888 677788999999999999988755333222 2233347778888999999999999998885


Q ss_pred             CCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHH
Q 013228          196 GTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTI  275 (447)
Q Consensus       196 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l  275 (447)
                      .-..+       .++..|+.-|+..+-..|....-+++-.+..+.       -..++|.|+.=...+ +..++.-...++
T Consensus       760 aiGPq-------dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg-------pfsVlP~lm~dY~TP-e~nVQnGvLkam  824 (975)
T COG5181         760 AIGPQ-------DVLDILLNNLKVQERQQRVCTSVAISIVAEYCG-------PFSVLPTLMSDYETP-EANVQNGVLKAM  824 (975)
T ss_pred             hcCHH-------HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC-------chhhHHHHHhcccCc-hhHHHHhHHHHH
Confidence            43322       345566666655444444333333433332221       123566666666677 778888877777


Q ss_pred             HHHhcCCHH-HHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHH-HHHHHHcCChHHHHhhccCCCHHHH
Q 013228          276 SNITAGNSE-HIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQ-IKYLVREGCIKPLCDLLLCADPEIV  353 (447)
Q Consensus       276 ~nl~~~~~~-~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~-~~~l~~~~~l~~L~~ll~~~~~~~~  353 (447)
                      +.+.....+ ...++  ..+.|.|-+.+.+.|+.-|+.|...+..++.++..-. ...++.  .+..|..-+-++.|.++
T Consensus       825 ~fmFeyig~~s~dYv--y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IH--LlNllwpNIle~sPhvi  900 (975)
T COG5181         825 CFMFEYIGQASLDYV--YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIH--LLNLLWPNILEPSPHVI  900 (975)
T ss_pred             HHHHHHHHHHHHHHH--HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHH--HHHHhhhhccCCCcHHH
Confidence            776552212 22222  2367778888888899999999999999988642110 111111  23333333345667777


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 013228          354 TVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWCG  421 (447)
Q Consensus       354 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  421 (447)
                      ....+++..+...                    +-.--.+..+.+-+-|++..|+++.-...+.++-.
T Consensus       901 ~~~~Eg~e~~~~~--------------------lg~g~~m~Yv~qGLFHPs~~VRk~ywtvyn~myv~  948 (975)
T COG5181         901 QSFDEGMESFATV--------------------LGSGAMMKYVQQGLFHPSSTVRKRYWTVYNIMYVF  948 (975)
T ss_pred             HHHHHHHHHHHHH--------------------hccHHHHHHHHHhccCchHHHHHHHHHHHhhhhhc
Confidence            7766666555432                    22122246677778899999999888888876543

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.85  E-value=3e-08  Score=89.89  Aligned_cols=308  Identities=13%  Similarity=0.063  Sum_probs=195.2

Q ss_pred             HHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCC-CCCChhhHhhhHHHHHHhhccCC
Q 013228          101 QAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLVHSND  179 (447)
Q Consensus       101 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~l~~ll~~~~  179 (447)
                      +++.+|..+++.-...|.-+....+.+.|++.| +.++..+.--+...+.|+.... +-.......+++..++.++.+.|
T Consensus       408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD  486 (743)
T COG5369         408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD  486 (743)
T ss_pred             HHHHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch
Confidence            344455555555555566777888899999999 5566555666777777776555 33334445889999999999999


Q ss_pred             hhHHHHHHHHHHHhccCCcHHHH-HHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChh---hHHHHHhc----CC
Q 013228          180 KEVMTDACRALFYLSEGTNDEIQ-AVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDF---QTQCIINC----GA  251 (447)
Q Consensus       180 ~~v~~~al~~l~~l~~~~~~~~~-~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~---~~~~~~~~----~~  251 (447)
                      ..++....|.++++..+.++..+ .++..-++..++.+..++...++..++..+.|+.+....   ..+.+++.    -.
T Consensus       487 daLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~yl  566 (743)
T COG5369         487 DALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYL  566 (743)
T ss_pred             hhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHH
Confidence            99999999999999976654322 355667789999999999999999999999999874332   22222221    13


Q ss_pred             hHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHHHhcC-----------chhHHHHHHHHHHH
Q 013228          252 LPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVID-AGLIGPLVNLLQNA-----------EFDIKNWAARAISN  319 (447)
Q Consensus       252 l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-~~~~~~L~~~l~~~-----------~~~v~~~a~~aL~~  319 (447)
                      .+.+++.+... ++-.-.+.++.+.+++..+.+..+.+.+ ..++..+.+++...           ..++-..-.....+
T Consensus       567 fk~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~  645 (743)
T COG5369         567 FKRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVN  645 (743)
T ss_pred             HHHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeec
Confidence            45677777777 7767777799999988865443333332 34555555554321           11111111222223


Q ss_pred             hcCCCCHHHHHHHHHcCChHHHHhhcc---CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHH
Q 013228          320 ATFGGTHEQIKYLVREGCIKPLCDLLL---CADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKI  396 (447)
Q Consensus       320 l~~~~~~~~~~~l~~~~~l~~L~~ll~---~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l  396 (447)
                      +..+.+.-.+.....    +.+-.+=+   .++.++..+..|.+.++.+.....+..    ...-.-++.+.+.|.-+.+
T Consensus       646 l~e~~d~f~r~~~~~----p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vt----ratveR~~iL~~~G~~e~l  717 (743)
T COG5369         646 LSENSDKFKRLVLTT----PHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVT----RATVERIQILCANGIREWL  717 (743)
T ss_pred             ccccccccccceecC----CCccccccccCCCchhhhhccceEEEecccCccCCccc----hhhHHHHHHHHHccHHHHH
Confidence            332211100000000    11111111   133467778888888865543222210    0111236788889999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHh
Q 013228          397 ENLRSHDNDEIHEKSVKILETY  418 (447)
Q Consensus       397 ~~l~~~~~~~v~~~a~~~l~~~  418 (447)
                      +.+++++++.|++++..+|..+
T Consensus       718 ~k~q~~~Sl~vrek~~taL~~l  739 (743)
T COG5369         718 VKIQAKDSLIVREKIGTALENL  739 (743)
T ss_pred             HHHhccCcHHHHHHHHHHHHhh
Confidence            9999999999999999998764

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.81  E-value=4.2e-07  Score=88.80  Aligned_cols=234  Identities=15%  Similarity=0.167  Sum_probs=184.9

Q ss_pred             HHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhh
Q 013228           12 MQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLL   91 (447)
Q Consensus        12 ~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll   91 (447)
                      -++.|+..|.+++... +.....-..-|+.|.++++|+++. .+++..-+.+-..+..-++.++..+++.++-..+++.|
T Consensus       486 HRlRAL~LL~RFLDlG-pWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL  563 (1387)
T KOG1517|consen  486 HRLRALVLLARFLDLG-PWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVL  563 (1387)
T ss_pred             HHHHHHHHHHHHhccc-hhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEe
Confidence            4677888888888764 677777788899999999999999 89999999999998887899999999999999999988


Q ss_pred             CC-C--CHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChh-hHhhh
Q 013228           92 AS-P--SDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFD-QVRPA  167 (447)
Q Consensus        92 ~~-~--~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~  167 (447)
                      .. +  +++-|..|+.+|+.++.+-+..++...+.+.+..-+.+|..++.+-++.-++-+|..|-.+.+..+.. ...+.
T Consensus       564 ~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~A  643 (1387)
T KOG1517|consen  564 DPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNA  643 (1387)
T ss_pred             cCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccH
Confidence            76 2  56899999999999998877778888888888888888844445667777999999999887444443 44778


Q ss_pred             HHHHHHhhccCChhHHHHHHHHHHHhccC----CcHHHHHH------------HHhCcH---HHHHHhcCCCCchhHhHH
Q 013228          168 LPALAQLVHSNDKEVMTDACRALFYLSEG----TNDEIQAV------------IEAGVC---PRLVELLGHPSPSVLTRA  228 (447)
Q Consensus       168 l~~l~~ll~~~~~~v~~~al~~l~~l~~~----~~~~~~~~------------~~~~~~---~~L~~lL~~~~~~v~~~a  228 (447)
                      ...|..+|.++-++|+..|+.+|+.+..+    .+++...+            .+.-+.   -.++.++++.++-++...
T Consensus       644 hekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev  723 (1387)
T KOG1517|consen  644 HEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEV  723 (1387)
T ss_pred             HHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHH
Confidence            89999999999999999999999988865    23222221            111112   256667788889999999


Q ss_pred             HHHHHHhhcCChhhHHHHH
Q 013228          229 LQTVVNIAAGDDFQTQCII  247 (447)
Q Consensus       229 ~~~l~~l~~~~~~~~~~~~  247 (447)
                      .-+++.++.++......+.
T Consensus       724 ~v~ls~~~~g~~~~~~~va  742 (1387)
T KOG1517|consen  724 VVALSHFVVGYVSHLKVVA  742 (1387)
T ss_pred             HHHHHHHHHhhHHHhHHHh
Confidence            8999988887765544433

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.81  E-value=2.4e-06  Score=80.83  Aligned_cols=345  Identities=14%  Similarity=0.138  Sum_probs=203.8

Q ss_pred             ccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcC-------CCCHHHHHHHHHHHHHHcCCChhhH
Q 013228            3 AGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMR-------EDYPQLQFEAAWALKNIVSGTSEDT   75 (447)
Q Consensus         3 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~-------~~~~~v~~~a~~~L~~l~~~~~~~~   75 (447)
                      +..+|+|++.+.-.+..+.+++...  ......+...++|.+......       .+...+...+..+-..         
T Consensus       643 rEf~sPDeemkkivLKVv~qcc~t~--Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~K---------  711 (1172)
T KOG0213|consen  643 REFGSPDEEMKKIVLKVVKQCCATD--GVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAK---------  711 (1172)
T ss_pred             HhhCCChHHHHHHHHHHHHHHhccc--CCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHH---------
Confidence            3457888888888888888888763  444455666677777665432       1212222222222222         


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh--hHHHHHHhcCCHHHHHHHhcccc-chhHHHHHHHHHHHh
Q 013228           76 KVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSA--RCRDLVLSEEALIPLLTQLNKHA-KLSMLRIATWTLSNF  152 (447)
Q Consensus        76 ~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~--~~~~~~~~~~~l~~l~~~l~~~~-~~~~~~~a~~~L~~l  152 (447)
                        +.....+..++.-+.+.++..|..++.++.++...-.  ...+.+ +...+..++..+...+ ...+.-....++.+-
T Consensus       712 --vG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderl-eE~lidgil~Afqeqtt~d~vml~gfg~V~~~  788 (1172)
T KOG0213|consen  712 --VGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERL-EERLIDGILYAFQEQTTEDSVMLLGFGTVVNA  788 (1172)
T ss_pred             --hCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHH-HHHHHHHHHHHHHhcccchhhhhhhHHHHHHH
Confidence              2222345556666677777777777766666542211  111111 2223445555553222 223333444444333


Q ss_pred             cCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccC---CcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHH
Q 013228          153 CAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEG---TNDEIQAVIEAGVCPRLVELLGHPSPSVLTRAL  229 (447)
Q Consensus       153 ~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~---~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~  229 (447)
                      ..   .........++..++..|++..+.++..++..++.++.-   ..+ .+.+...|  -.|...|....+++.-..+
T Consensus       789 lg---~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~e-e~~m~~lG--vvLyEylgeeypEvLgsIL  862 (1172)
T KOG0213|consen  789 LG---GRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGE-EKLMGHLG--VVLYEYLGEEYPEVLGSIL  862 (1172)
T ss_pred             Hh---hccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccH-HHHHHHhh--HHHHHhcCcccHHHHHHHH
Confidence            22   222334466777888899999999999999999888731   111 12222233  2466778888888877777


Q ss_pred             HHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHH--HHHHHcCChHHHHHHHhcCch
Q 013228          230 QTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHI--QAVIDAGLIGPLVNLLQNAEF  307 (447)
Q Consensus       230 ~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~--~~l~~~~~~~~L~~~l~~~~~  307 (447)
                      .++..++....-....---.+++|.|..+|++. ..+++..+...++.+|..+++..  ...+.  +.-.|+++|++-..
T Consensus       863 gAikaI~nvigm~km~pPi~dllPrltPILknr-heKVqen~IdLvg~IadrgpE~v~aREWMR--IcfeLlelLkahkK  939 (1172)
T KOG0213|consen  863 GAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNR-HEKVQENCIDLVGTIADRGPEYVSAREWMR--ICFELLELLKAHKK  939 (1172)
T ss_pred             HHHHHHHHhccccccCCChhhhcccchHhhhhh-HHHHHHHHHHHHHHHHhcCcccCCHHHHHH--HHHHHHHHHHHHHH
Confidence            766666532210000001137899999999999 99999999999999998655521  11222  33447778888889


Q ss_pred             hHHHHHHHHHHHhcCCCCHHH-HHHHH----------------------H-cC---ChHHHHhhccCCCHHHHHHHHHHH
Q 013228          308 DIKNWAARAISNATFGGTHEQ-IKYLV----------------------R-EG---CIKPLCDLLLCADPEIVTVFLKGL  360 (447)
Q Consensus       308 ~v~~~a~~aL~~l~~~~~~~~-~~~l~----------------------~-~~---~l~~L~~ll~~~~~~~~~~a~~~l  360 (447)
                      .+|+.|...++.++..-.|.. ...|.                      + .|   +++.|++-...++..++.-+++++
T Consensus       940 ~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkal 1019 (1172)
T KOG0213|consen  940 EIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKAL 1019 (1172)
T ss_pred             HHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHH
Confidence            999999999999887543321 11111                      1 12   244444444456667888889999


Q ss_pred             HHHHHhhhhh
Q 013228          361 EKILKVGEAE  370 (447)
Q Consensus       361 ~~l~~~~~~~  370 (447)
                      .-++++-...
T Consensus      1020 sf~Feyigem 1029 (1172)
T KOG0213|consen 1020 SFMFEYIGEM 1029 (1172)
T ss_pred             HHHHHHHHHH
Confidence            8888865443

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.80  E-value=4e-07  Score=88.91  Aligned_cols=252  Identities=17%  Similarity=0.194  Sum_probs=187.8

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 013228           41 VPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV  120 (447)
Q Consensus        41 v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~  120 (447)
                      +|.+++.|-++-   -|..|+..|+....-.+-....-..-|+.|..+++|+++-.++|-..+.+...+-.-++.|+..+
T Consensus       474 LPiVLQVLLSQv---HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dL  550 (1387)
T KOG1517|consen  474 LPIVLQVLLSQV---HRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADL  550 (1387)
T ss_pred             cchHHHHHHHHH---HHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHH
Confidence            455555554443   26678888888887777777778888999999999999999999999999999887778898888


Q ss_pred             HhcCCHHHHHHHhcccc--chhHHHHHHHHHHHhcCCCCCCChhhH-hhhHHHHHHhhccC-ChhHHHHHHHHHHHhccC
Q 013228          121 LSEEALIPLLTQLNKHA--KLSMLRIATWTLSNFCAGKPKPIFDQV-RPALPALAQLVHSN-DKEVMTDACRALFYLSEG  196 (447)
Q Consensus       121 ~~~~~l~~l~~~l~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~l~~l~~ll~~~-~~~v~~~al~~l~~l~~~  196 (447)
                      .+.++-...++.|..+.  +.+-+..++.+|..++.+.+..+.... .+++...+..+.++ .+-++..++-+|+.|.++
T Consensus       551 vKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d  630 (1387)
T KOG1517|consen  551 VKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWED  630 (1387)
T ss_pred             HhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhh
Confidence            88888777777774422  456777899999999998755555444 56777888888885 688899999999999977


Q ss_pred             CcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcC----ChhhHHHH------------HhcCCh---HHHHH
Q 013228          197 TNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG----DDFQTQCI------------INCGAL---PYLLG  257 (447)
Q Consensus       197 ~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~----~~~~~~~~------------~~~~~l---~~l~~  257 (447)
                      .+...=.-.+.+..+.|..+|.++-++||..|+.+|+.+...    .++....+            ++..+.   -.++.
T Consensus       631 ~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~  710 (1387)
T KOG1517|consen  631 YDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLA  710 (1387)
T ss_pred             cchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHH
Confidence            655432334567889999999999999999999999999874    22222211            121122   25666


Q ss_pred             hhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChH
Q 013228          258 LLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIG  296 (447)
Q Consensus       258 ~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~  296 (447)
                      .++.+ .+-++.+.+-+++.+..+.........-....+
T Consensus       711 ~vsdg-splvr~ev~v~ls~~~~g~~~~~~~va~n~~~~  748 (1387)
T KOG1517|consen  711 LVSDG-SPLVRTEVVVALSHFVVGYVSHLKVVAGNYLLP  748 (1387)
T ss_pred             HHhcc-chHHHHHHHHHHHHHHHhhHHHhHHHhhhhccc
Confidence            77777 899999999999998886655554444333333

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.79  E-value=5.5e-07  Score=80.60  Aligned_cols=274  Identities=17%  Similarity=0.196  Sum_probs=188.2

Q ss_pred             hhhhhccCCHHHHHHhhcCCCC-HHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHh
Q 013228           32 TEEVIPFGVVPRFVEFLMREDY-PQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLAS-PSDDIREQAVCALGNV  109 (447)
Q Consensus        32 ~~~~~~~~~v~~L~~ll~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~i~~~a~~~L~~l  109 (447)
                      .+.+...|++..|++++..++. ..++.+|.+.|-.+..  .++++.+...| +..++.+-+. ..++..+..+.+|.++
T Consensus       173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m  249 (832)
T KOG3678|consen  173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM  249 (832)
T ss_pred             hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence            3556667899999999999873 4579999999999876  67888888877 6666665543 5789999999999999


Q ss_pred             hcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCC-CCCChhhH-hhhHHHHHHhhccCChhHHHHHH
Q 013228          110 AADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK-PKPIFDQV-RPALPALAQLVHSNDKEVMTDAC  187 (447)
Q Consensus       110 ~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~-~~~l~~l~~ll~~~~~~v~~~al  187 (447)
                      -.++.+....+...|++..++--. ...++.+.++++.+|.|++.+. ...+..++ ..+-.-|+.+-.+.|+-.+.++|
T Consensus       250 FKHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC  328 (832)
T KOG3678|consen  250 FKHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC  328 (832)
T ss_pred             hhhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence            988888778888999999988877 6677999999999999998776 22222222 44444566666677888999999


Q ss_pred             HHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhH
Q 013228          188 RALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSI  267 (447)
Q Consensus       188 ~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v  267 (447)
                      -+++-++.+.+.. ..+.++|.+...-.++.+-++.....   --...+.+.        -...++.|+.+|.+. ..+.
T Consensus       329 lAV~vlat~KE~E-~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG~--------~~d~LqRLvPlLdS~-R~EA  395 (832)
T KOG3678|consen  329 LAVAVLATNKEVE-REVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQGR--------GPDDLQRLVPLLDSN-RLEA  395 (832)
T ss_pred             HHHhhhhhhhhhh-HHHhhccchhhhhhhhhccCcchhhh---hhhhhhccC--------ChHHHHHhhhhhhcc-hhhh
Confidence            9999998665432 34556677666666665544432111   000111111        123567888999877 5555


Q ss_pred             HHHHHHHHHHHhc-CCHH-HHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcC
Q 013228          268 KTDACWTISNITA-GNSE-HIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATF  322 (447)
Q Consensus       268 ~~~a~~~l~nl~~-~~~~-~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~  322 (447)
                      +..+++-++.=+. .+.. ..+.+.+-|.++.|-++.++.+..-...|..+|.-+-.
T Consensus       396 q~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE  452 (832)
T KOG3678|consen  396 QCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE  452 (832)
T ss_pred             hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence            5555544443222 1111 12345577899999999887776655666666665543

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.75  E-value=1e-07  Score=86.54  Aligned_cols=286  Identities=16%  Similarity=0.211  Sum_probs=189.6

Q ss_pred             hhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 013228           32 TEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAA  111 (447)
Q Consensus        32 ~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~  111 (447)
                      +.-+.+..+++.|+++|+.|+ ..+..-+...++|..-..+..+..+...|++..|+.++.+.+..+|....|++..+..
T Consensus       424 RTgL~d~~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmy  502 (743)
T COG5369         424 RTGLLDYPIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMY  502 (743)
T ss_pred             HhhccccchHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhh
Confidence            445567788999999999988 6888888889999888788889999999999999999999999999999999999985


Q ss_pred             CChhH-HHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCC--CChhhH------hhhHHHHHHhhccCChhH
Q 013228          112 DSARC-RDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPK--PIFDQV------RPALPALAQLVHSNDKEV  182 (447)
Q Consensus       112 ~~~~~-~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~------~~~l~~l~~ll~~~~~~v  182 (447)
                      +..+. +-.....-++..++... ++++..++..++..+.|++.+...  ......      .-....++..++..+|-.
T Consensus       503 ncq~~ekf~~Lakig~~kvl~~~-NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~  581 (743)
T COG5369         503 NCQKNEKFKFLAKIGVEKVLSYT-NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPME  581 (743)
T ss_pred             cCcchhhhhhHHhcCHHHHHHHh-cCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchh
Confidence            54432 22445566788999998 888999999999999999875422  111111      235667777888888877


Q ss_pred             HHHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHhc----CC-------CCchhHhHHHHHHHHhhcCChhhHHHHHhcC
Q 013228          183 MTDACRALFYLSEGTNDEIQAVIEA-GVCPRLVELL----GH-------PSPSVLTRALQTVVNIAAGDDFQTQCIINCG  250 (447)
Q Consensus       183 ~~~al~~l~~l~~~~~~~~~~~~~~-~~~~~L~~lL----~~-------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~  250 (447)
                      ....+..|.+++..++.....+.+. ..+..+...|    .+       ....+..+-.....++....+.......-..
T Consensus       582 i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~p  661 (743)
T COG5369         582 ILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTTP  661 (743)
T ss_pred             hhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecCC
Confidence            7778888888887666554444333 3444433333    21       1112222222222233322221111111000


Q ss_pred             ChHHHHHhhccCCchhHHHHHHHHHHHHhc---CC------HHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHh
Q 013228          251 ALPYLLGLLIHNHKKSIKTDACWTISNITA---GN------SEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNA  320 (447)
Q Consensus       251 ~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~---~~------~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l  320 (447)
                      -.+.. +--....+.+.-.+..|.+.|+..   ++      .+.++.+.+.|+-+.+..+...+++.+|+.+-.+|.++
T Consensus       662 ~~D~~-~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l  739 (743)
T COG5369         662 HLDNM-KKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENL  739 (743)
T ss_pred             Ccccc-ccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence            01100 001111245677778888888654   12      25566677787777777777777889999999999886

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.75  E-value=4e-06  Score=81.40  Aligned_cols=352  Identities=14%  Similarity=0.111  Sum_probs=217.2

Q ss_pred             cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228            2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH   81 (447)
Q Consensus         2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (447)
                      ++.+.+.|-+.|+.|+.-|.+=+... .-..+.=-+..++..++++|.+.+ .+||..|++|++-++..-++.+-.    
T Consensus        11 lekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~le----   84 (1233)
T KOG1824|consen   11 LEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQLE----   84 (1233)
T ss_pred             HHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHHHH----
Confidence            45678889999999998888766653 222222233457889999999999 899999999999998644443321    


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhc----c-ccchhHHHHHHHHHHHhcCCC
Q 013228           82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLN----K-HAKLSMLRIATWTLSNFCAGK  156 (447)
Q Consensus        82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~----~-~~~~~~~~~a~~~L~~l~~~~  156 (447)
                      ..++.|+.-+-++....|..+.-.|......-++.........+.+.+...+.    . .....++..++..+..+....
T Consensus        85 ~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~  164 (1233)
T KOG1824|consen   85 TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRF  164 (1233)
T ss_pred             HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhh
Confidence            23455666554555555554444443333222222222223334444444442    2 223346777777776665544


Q ss_pred             CCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-CCchhHhHHHHHHHHh
Q 013228          157 PKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH-PSPSVLTRALQTVVNI  235 (447)
Q Consensus       157 ~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~~~v~~~a~~~l~~l  235 (447)
                      ...-......++..++.-+.++...+++.++.+|+.++...+..    .-.++++.|.+-|.. ..+...+.-..+|+.+
T Consensus       165 g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~----ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i  240 (1233)
T KOG1824|consen  165 GTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD----LYVELIEHLLKGLSNRTQMSATRTYIQCLAAI  240 (1233)
T ss_pred             cccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHhccCCCCchHHHHHHHHHHHHH
Confidence            23333345667777777888889999999999999999654432    112456666666644 4455556667788888


Q ss_pred             hcCChhhHHHHHhcCChHHHHHhh---ccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc--------
Q 013228          236 AAGDDFQTQCIINCGALPYLLGLL---IHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQN--------  304 (447)
Q Consensus       236 ~~~~~~~~~~~~~~~~l~~l~~~l---~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~--------  304 (447)
                      ++........- -...++.+.+..   ... +.++|+....++..+....|..+-..+.. ++..+++.+..        
T Consensus       241 ~r~ag~r~~~h-~~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~rcp~ei~p~~pe-i~~l~l~yisYDPNy~yd~  317 (1233)
T KOG1824|consen  241 CRQAGHRFGSH-LDKIVPLVADYCNKIEED-DDELREYCLQALESFLRRCPKEILPHVPE-IINLCLSYISYDPNYNYDT  317 (1233)
T ss_pred             HHHhcchhhcc-cchhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHhChhhhcccchH-HHHHHHHHhccCCCCCCCC
Confidence            76544332211 124677777777   555 78999999888887776544433222211 22223322210        


Q ss_pred             --------------------------CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHH
Q 013228          305 --------------------------AEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLK  358 (447)
Q Consensus       305 --------------------------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~  358 (447)
                                                -++.||+.|+.++..+... ..+....+.+ .+-+.++.-+++..+.++...+.
T Consensus       318 ~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS-R~E~L~~~~q-~l~p~lI~RfkEREEnVk~dvf~  395 (1233)
T KOG1824|consen  318 EEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS-RLEMLPDFYQ-TLGPALISRFKEREENVKADVFH  395 (1233)
T ss_pred             ccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc-cHHHHHHHHH-HhCHHHHHHHHHHhhhHHHHHHH
Confidence                                      0246899999999888764 3444444433 34567777788888888888888


Q ss_pred             HHHHHHHhhh
Q 013228          359 GLEKILKVGE  368 (447)
Q Consensus       359 ~l~~l~~~~~  368 (447)
                      ++..+++.-+
T Consensus       396 ~yi~ll~qt~  405 (1233)
T KOG1824|consen  396 AYIALLKQTR  405 (1233)
T ss_pred             HHHHHHHcCC
Confidence            8877776543

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.73  E-value=2.8e-06  Score=76.22  Aligned_cols=240  Identities=11%  Similarity=0.114  Sum_probs=168.6

Q ss_pred             HhhhHHHHHHhhccCCh--hHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-CCchhHhHHHHHHHHhhcCCh
Q 013228          164 VRPALPALAQLVHSNDK--EVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH-PSPSVLTRALQTVVNIAAGDD  240 (447)
Q Consensus       164 ~~~~l~~l~~ll~~~~~--~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~~~v~~~a~~~l~~l~~~~~  240 (447)
                      ..+.+..|++++..++.  .++..+.+.|-.+...  ++.+.+...| +..++.+.+. ...+.....+.+|.++..+++
T Consensus       178 ~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a--eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSe  254 (832)
T KOG3678|consen  178 LDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA--ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSE  254 (832)
T ss_pred             ccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh--hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhH
Confidence            36788999999998864  5688899888877632  2234455555 4555555543 446778889999999999999


Q ss_pred             hhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHH
Q 013228          241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA-GNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISN  319 (447)
Q Consensus       241 ~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~  319 (447)
                      +....++..|+++.++-..+.. ++.+.+.++.+|+|++. +..+..+.+++..+-+.|..+..+.|.-+|..|+.+.+.
T Consensus       255 et~~~Lvaa~~lD~vl~~~rRt-~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~v  333 (832)
T KOG3678|consen  255 ETCQRLVAAGGLDAVLYWCRRT-DPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAV  333 (832)
T ss_pred             HHHHHHHhhcccchheeecccC-CHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhh
Confidence            9999999999999999999988 89999999999999987 455667778888888888888888899999999999999


Q ss_pred             hcCCCCHHHHHHHHHcCC---hHHHHhhccCC--------------------------CHHHHHHHHHHHHHHHHhhhhh
Q 013228          320 ATFGGTHEQIKYLVREGC---IKPLCDLLLCA--------------------------DPEIVTVFLKGLEKILKVGEAE  370 (447)
Q Consensus       320 l~~~~~~~~~~~l~~~~~---l~~L~~ll~~~--------------------------~~~~~~~a~~~l~~l~~~~~~~  370 (447)
                      ++.+.  +.-..+-..|.   +++++.-++-.                          ....-..++.+++-..+..-+.
T Consensus       334 lat~K--E~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs  411 (832)
T KOG3678|consen  334 LATNK--EVEREVRKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKS  411 (832)
T ss_pred             hhhhh--hhhHHHhhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHH
Confidence            98853  33333333343   33333333210                          0011123344443333322111


Q ss_pred             hhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013228          371 KNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETY  418 (447)
Q Consensus       371 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~  418 (447)
                              .++ -...|.+.|.++.|.++..++++--.+.|.+.|.-+
T Consensus       412 --------~Q~-K~kVFseIGAIQaLKevaSS~d~vaakfAseALtvi  450 (832)
T KOG3678|consen  412 --------LQG-KTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVI  450 (832)
T ss_pred             --------hcc-chhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence                    112 267899999999999999988777666676666543

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.72  E-value=6.5e-06  Score=78.08  Aligned_cols=320  Identities=14%  Similarity=0.106  Sum_probs=159.6

Q ss_pred             hcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHH
Q 013228           48 LMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALI  127 (447)
Q Consensus        48 l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~  127 (447)
                      |++|+ +-+|-..++.|+.+=.  ++...     ..+|.+...|++.+..+|++|..++..+-....   ..+  .++-.
T Consensus       108 LQHPN-EyiRG~TLRFLckLkE--~ELle-----pl~p~IracleHrhsYVRrNAilaifsIyk~~~---~L~--pDape  174 (948)
T KOG1058|consen  108 LQHPN-EYIRGSTLRFLCKLKE--PELLE-----PLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE---HLI--PDAPE  174 (948)
T ss_pred             ccCch-HhhcchhhhhhhhcCc--HHHhh-----hhHHHHHHHHhCcchhhhhhhheeehhHHhhhh---hhc--CChHH
Confidence            45566 5666666666666543  33222     356777778888999999999999988864321   111  12333


Q ss_pred             HHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHH---hhccCChhHHHHHHHHHHHhccCCcHHHHHH
Q 013228          128 PLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQ---LVHSNDKEVMTDACRALFYLSEGTNDEIQAV  204 (447)
Q Consensus       128 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~---ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~  204 (447)
                      .+-..|....|+..+++|...|...-..   .       .+..+..   -+.+-++.++...+..+...+...+...   
T Consensus       175 Li~~fL~~e~DpsCkRNAFi~L~~~D~E---r-------Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~---  241 (948)
T KOG1058|consen  175 LIESFLLTEQDPSCKRNAFLMLFTTDPE---R-------ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEK---  241 (948)
T ss_pred             HHHHHHHhccCchhHHHHHHHHHhcCHH---H-------HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHh---
Confidence            3444555677788888877665543211   0       1111111   1111223333333333333332222211   


Q ss_pred             HHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCCh------------------hhHH---------------HHHhcCC
Q 013228          205 IEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD------------------FQTQ---------------CIINCGA  251 (447)
Q Consensus       205 ~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~------------------~~~~---------------~~~~~~~  251 (447)
                        ...+..+..+|.+.++.++..|..++.+++....                  ...+               .+++ |.
T Consensus       242 --~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~-~l  318 (948)
T KOG1058|consen  242 --ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQ-GL  318 (948)
T ss_pred             --hHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHH-HH
Confidence              1223344444443333333333333332222111                  0000               0111 33


Q ss_pred             hHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc---CchhHHHHHHHHHHHhcCCCCHHH
Q 013228          252 LPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQN---AEFDIKNWAARAISNATFGGTHEQ  328 (447)
Q Consensus       252 l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~---~~~~v~~~a~~aL~~l~~~~~~~~  328 (447)
                      +--++..|.++ +-++|+.+......++...  +...+++. +-..+..--..   ++...|+.-..++..++.. -++.
T Consensus       319 ~mDvLrvLss~-dldvr~Ktldi~ldLvssr--Nvediv~~-Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~-Fp~~  393 (948)
T KOG1058|consen  319 IMDVLRVLSSP-DLDVRSKTLDIALDLVSSR--NVEDIVQF-LKKEVMKTHNEESDDNGKYRQLLIKTIHACAVK-FPEV  393 (948)
T ss_pred             HHHHHHHcCcc-cccHHHHHHHHHHhhhhhc--cHHHHHHH-HHHHHHhccccccccchHHHHHHHHHHHHHhhc-ChHH
Confidence            44445555566 6667766666655554421  11111110 00011111111   1234566777777777664 2333


Q ss_pred             HHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHH
Q 013228          329 IKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIH  408 (447)
Q Consensus       329 ~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~  408 (447)
                      ..     .+++.|++.+.+.++.....++..+...++..++.+             ..+. .   ..++.+-.-.+.+++
T Consensus       394 aa-----tvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr-------------~~ii-~---~l~~~~~~irS~ki~  451 (948)
T KOG1058|consen  394 AA-----TVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLR-------------ASII-E---KLLETFPQIRSSKIC  451 (948)
T ss_pred             HH-----HHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHH-------------HHHH-H---HHHHhhhhhcccccc
Confidence            33     258888899999888777777777777777655432             2222 1   223333333567788


Q ss_pred             HHHHHHHHHhcCCCC
Q 013228          409 EKSVKILETYWCGRV  423 (447)
Q Consensus       409 ~~a~~~l~~~~~~~~  423 (447)
                      +-|.|++..|+..+.
T Consensus       452 rgalwi~GeYce~~~  466 (948)
T KOG1058|consen  452 RGALWILGEYCEGLS  466 (948)
T ss_pred             hhHHHHHHHHHhhhH
Confidence            888999998887655

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.70  E-value=3.8e-07  Score=84.30  Aligned_cols=267  Identities=16%  Similarity=0.125  Sum_probs=170.8

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHH--HHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCC-C
Q 013228           82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCR--DLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKP-K  158 (447)
Q Consensus        82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~--~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~-~  158 (447)
                      -++..++.+|+++.+.+|..++...+.|+.--..|.  +.+...|.  .|.+.| ....+++.-..+.++..+..... .
T Consensus       604 ~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~l-ge~ypEvLgsil~Ai~~I~sv~~~~  680 (975)
T COG5181         604 MIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENL-GEDYPEVLGSILKAICSIYSVHRFR  680 (975)
T ss_pred             HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhc-CcccHHHHHHHHHHHHHHhhhhccc
Confidence            356778889999999999999999998863222121  12222221  234444 45567777776666666654331 1


Q ss_pred             CChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcC
Q 013228          159 PIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG  238 (447)
Q Consensus       159 ~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~  238 (447)
                      ....-..+++|.+...|++...++..+.+..++.++...++....--=..+-=-|+..|.+.+.++|+.|..+++.++..
T Consensus       681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~a  760 (975)
T COG5181         681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRA  760 (975)
T ss_pred             ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence            11123478999999999999999999999999999987765432100012233466777788899999999999887753


Q ss_pred             ChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHH
Q 013228          239 DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAIS  318 (447)
Q Consensus       239 ~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~  318 (447)
                      -..       ..++..|+.-|+.. +...|.-...+++-.+...       --..++|.|+.=...++..++.-.+.+++
T Consensus       761 iGP-------qdvL~~LlnnLkvq-eRq~RvctsvaI~iVae~c-------gpfsVlP~lm~dY~TPe~nVQnGvLkam~  825 (975)
T COG5181         761 IGP-------QDVLDILLNNLKVQ-ERQQRVCTSVAISIVAEYC-------GPFSVLPTLMSDYETPEANVQNGVLKAMC  825 (975)
T ss_pred             cCH-------HHHHHHHHhcchHH-HHHhhhhhhhhhhhhHhhc-------CchhhHHHHHhcccCchhHHHHhHHHHHH
Confidence            321       13455566666555 4444433333333333211       11236777777677788889998888988


Q ss_pred             HhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhh
Q 013228          319 NATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGE  368 (447)
Q Consensus       319 ~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~  368 (447)
                      .+..........++..  ..+.|...+.+.|+--+..+...+..+.-.+.
T Consensus       826 fmFeyig~~s~dYvy~--itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~  873 (975)
T COG5181         826 FMFEYIGQASLDYVYS--ITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP  873 (975)
T ss_pred             HHHHHHHHHHHHHHHH--hhHHHHhhhcccchHHHHHHHHHHHHHhcCCC
Confidence            8876543333444333  46667778888888778888888887765543

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.70  E-value=4.7e-06  Score=76.49  Aligned_cols=344  Identities=11%  Similarity=0.078  Sum_probs=209.6

Q ss_pred             ccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHH----HHHcCCChhhHHHH
Q 013228            3 AGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWAL----KNIVSGTSEDTKVV   78 (447)
Q Consensus         3 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L----~~l~~~~~~~~~~~   78 (447)
                      ..+++.|..++..|+..+.+++.-...+.  ...-..+...+.++....+ ..++..| +.+    ..+...+..   .+
T Consensus        91 ~cf~D~d~~vRyyACEsLYNiaKv~k~~v--~~~Fn~iFdvL~klsaDsd-~~V~~~a-eLLdRLikdIVte~~~---tF  163 (675)
T KOG0212|consen   91 NCFSDQDSQVRYYACESLYNIAKVAKGEV--LVYFNEIFDVLCKLSADSD-QNVRGGA-ELLDRLIKDIVTESAS---TF  163 (675)
T ss_pred             HhccCccceeeeHhHHHHHHHHHHhccCc--ccchHHHHHHHHHHhcCCc-cccccHH-HHHHHHHHHhcccccc---cc
Confidence            45677888999999999998876531211  1222346677777776666 4555433 333    333332111   22


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHH-hcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCC-
Q 013228           79 IDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVL-SEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK-  156 (447)
Q Consensus        79 ~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-  156 (447)
                      -=.+++|.|-.-+...++..|...+.-|..|-.-++  .+.+. -...++-+.++| .+++.+++..+-.++..+...- 
T Consensus       164 sL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~--~~m~~yl~~~ldGLf~~L-sD~s~eVr~~~~t~l~~fL~eI~  240 (675)
T KOG0212|consen  164 SLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPD--LEMISYLPSLLDGLFNML-SDSSDEVRTLTDTLLSEFLAEIR  240 (675)
T ss_pred             CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCc--HHHHhcchHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHHh
Confidence            222344555444555789999888888877754332  23332 123466677777 6777788877766666654332 


Q ss_pred             CCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCch-hHhHHHHHH---
Q 013228          157 PKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPS-VLTRALQTV---  232 (447)
Q Consensus       157 ~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~-v~~~a~~~l---  232 (447)
                      ..+........++.++.-+.++++.++..|+.-+.....-.+.. -...-.|++..+++++.++.+. ++..+...-   
T Consensus       241 s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~-~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l  319 (675)
T KOG0212|consen  241 SSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD-LLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLL  319 (675)
T ss_pred             cCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc-hhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHH
Confidence            12222234667888889999999999998887777766544432 2344568888889999876663 544443322   


Q ss_pred             HHhhcCChhhHHHHHhc-CChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHH
Q 013228          233 VNIAAGDDFQTQCIINC-GALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKN  311 (447)
Q Consensus       233 ~~l~~~~~~~~~~~~~~-~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~  311 (447)
                      ..++.... .... ++. .+++.+.+.+.++ ..+.|..+..-+..+-...+.+. ......+++.|+.-+.+.+.++..
T Consensus       320 ~~l~s~~~-~~~~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~ql-~~h~~~if~tLL~tLsd~sd~vvl  395 (675)
T KOG0212|consen  320 LKLVSSER-LKEE-IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQL-LVHNDSIFLTLLKTLSDRSDEVVL  395 (675)
T ss_pred             HHHHhhhh-hccc-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcchh-hhhccHHHHHHHHhhcCchhHHHH
Confidence            22222111 1111 332 3567888888888 88888888777776655444422 223456899999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 013228          312 WAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKV  366 (447)
Q Consensus       312 ~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~  366 (447)
                      .+...+.+++...+..+...     ++..|.++...+..-+...+--++.+++-.
T Consensus       396 ~~L~lla~i~~s~~~~~~~~-----fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~l  445 (675)
T KOG0212|consen  396 LALSLLASICSSSNSPNLRK-----FLLSLLEMFKEDTKLLEVRGNLIIRQLCLL  445 (675)
T ss_pred             HHHHHHHHHhcCcccccHHH-----HHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Confidence            99999999998654332222     244455555555444455555555555543

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.70  E-value=1.7e-05  Score=74.07  Aligned_cols=342  Identities=16%  Similarity=0.131  Sum_probs=216.1

Q ss_pred             ccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCC
Q 013228            3 AGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHG   82 (447)
Q Consensus         3 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~   82 (447)
                      +-+..+.+.+|.....++..+.........     ..+.+.+.++++... ..-+..+.+.+..+..+.  ....+.+.+
T Consensus       103 ~~~~tps~~~q~~~~~~l~~~~~~~~~~~~-----~~~l~~l~~ll~~~~-~~~~~~aa~~~ag~v~g~--~i~~~~~~~  174 (569)
T KOG1242|consen  103 EELDTPSKSVQRAVSTCLPPLVVLSKGLSG-----EYVLELLLELLTSTK-IAERAGAAYGLAGLVNGL--GIESLKEFG  174 (569)
T ss_pred             HhcCCCcHHHHHHHHHHhhhHHHHhhccCH-----HHHHHHHHHHhcccc-HHHHhhhhHHHHHHHcCc--HHhhhhhhh
Confidence            345566778888888888776554311111     225677888888777 688888999999888743  344566678


Q ss_pred             ChHHHHHhhCCCCHHHHH-HHHHHHHHhhcCC-hhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCC
Q 013228           83 AVPIFVKLLASPSDDIRE-QAVCALGNVAADS-ARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPI  160 (447)
Q Consensus        83 ~i~~L~~ll~~~~~~i~~-~a~~~L~~l~~~~-~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~  160 (447)
                      ++..+.....+.....++ .+..+.-..+..- +.....+  ...++.++... .+....++..+..+...+.+.-+.  
T Consensus       175 ~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyi--v~~lp~il~~~-~d~~~~Vr~Aa~~a~kai~~~~~~--  249 (569)
T KOG1242|consen  175 FLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYI--VPILPSILTNF-GDKINKVREAAVEAAKAIMRCLSA--  249 (569)
T ss_pred             HHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchH--HhhHHHHHHHh-hccchhhhHHHHHHHHHHHHhcCc--
Confidence            888899988875444433 3333333332111 1110111  11344455544 455678888877777766654311  


Q ss_pred             hhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCCh
Q 013228          161 FDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD  240 (447)
Q Consensus       161 ~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~  240 (447)
                       ..+..++|.++.-+..........++..++.++...+.+.. ..-..++|.+.+.|.+..++++..+..++..++...+
T Consensus       250 -~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svid  327 (569)
T KOG1242|consen  250 -YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVID  327 (569)
T ss_pred             -chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhc
Confidence             12344566666555555777888899999999887776654 5556899999999999999999999999999886433


Q ss_pred             hhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHH
Q 013228          241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA---GNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAI  317 (447)
Q Consensus       241 ~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~---~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL  317 (447)
                      .- .  ++ ..++.|++.+.++ ...+. ++...|+.=..   -.+...     .-++|.|.+-+...+..+++.++..+
T Consensus       328 N~-d--I~-~~ip~Lld~l~dp-~~~~~-e~~~~L~~ttFV~~V~~psL-----almvpiL~R~l~eRst~~kr~t~~Ii  396 (569)
T KOG1242|consen  328 NP-D--IQ-KIIPTLLDALADP-SCYTP-ECLDSLGATTFVAEVDAPSL-----ALMVPILKRGLAERSTSIKRKTAIII  396 (569)
T ss_pred             cH-H--HH-HHHHHHHHHhcCc-ccchH-HHHHhhcceeeeeeecchhH-----HHHHHHHHHHHhhccchhhhhHHHHH
Confidence            11 1  11 3678888888877 43222 22222221111   011100     11455566666666788889999999


Q ss_pred             HHhcCCC-CHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhh
Q 013228          318 SNATFGG-THEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEK  371 (447)
Q Consensus       318 ~~l~~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~  371 (447)
                      .|++.-- ++.....++. .+++-+-..+....|++|..+..+|..+.+..+..+
T Consensus       397 dNm~~LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~  450 (569)
T KOG1242|consen  397 DNMCKLVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAVAARALGALLERLGEVS  450 (569)
T ss_pred             HHHHHhhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhc
Confidence            9998754 3433333222 256666677777889999999999988887655443

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.69  E-value=1.4e-05  Score=72.91  Aligned_cols=330  Identities=15%  Similarity=0.063  Sum_probs=202.2

Q ss_pred             CCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcccc-chhHHHHHHH
Q 013228           69 SGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHA-KLSMLRIATW  147 (447)
Q Consensus        69 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~-~~~~~~~a~~  147 (447)
                      ...+..+..+.-....+.+..++-+++.++|..+.+++..+..+.... ..+.+.+.-..++.-|..+. +..-+++|+.
T Consensus        12 ~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l-~~~~~l~id~~ii~SL~~~~~~~~ER~QALk   90 (371)
T PF14664_consen   12 KRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESL-QILLKLHIDIFIIRSLDRDNKNDVEREQALK   90 (371)
T ss_pred             HhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHH-HHHHHcCCchhhHhhhcccCCChHHHHHHHH
Confidence            334433333333334455554454555999999999999999887654 44555565555555554433 3445778888


Q ss_pred             HHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhH
Q 013228          148 TLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTR  227 (447)
Q Consensus       148 ~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~  227 (447)
                      .+..+.... ......-.+++..++....+.++..+..|+.+++.++-.+++   .+...|++..+.+.+.++...+...
T Consensus        91 liR~~l~~~-~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~  166 (371)
T PF14664_consen   91 LIRAFLEIK-KGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISES  166 (371)
T ss_pred             HHHHHHHhc-CCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHH
Confidence            888887663 222334578899999999999999999999999999977664   4678899999999998766667777


Q ss_pred             HHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccC------Cch--hHHHHHHHHHHHHhcCCHHHHHHHHHc-CChHHH
Q 013228          228 ALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHN------HKK--SIKTDACWTISNITAGNSEHIQAVIDA-GLIGPL  298 (447)
Q Consensus       228 a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~------~~~--~v~~~a~~~l~nl~~~~~~~~~~l~~~-~~~~~L  298 (447)
                      .+.++-.+..... .++.+...--++.++.-+.+.      .+.  +.-..+..++..+...-+.......+. ..+..|
T Consensus       167 l~~~lL~lLd~p~-tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksL  245 (371)
T PF14664_consen  167 LLDTLLYLLDSPR-TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSL  245 (371)
T ss_pred             HHHHHHHHhCCcc-hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHH
Confidence            8888888876443 334343323344444444322      122  233445555555554332222122222 478889


Q ss_pred             HHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHH------cCCh---HHHHhhccCCC---HHHHHHHHHHHHHHHHh
Q 013228          299 VNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVR------EGCI---KPLCDLLLCAD---PEIVTVFLKGLEKILKV  366 (447)
Q Consensus       299 ~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~------~~~l---~~L~~ll~~~~---~~~~~~a~~~l~~l~~~  366 (447)
                      +..+..+.+++|......+..+..-..+.....+..      .|..   ..+..-.....   +.....-...+.+..  
T Consensus       246 v~~L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~--  323 (371)
T PF14664_consen  246 VDSLRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYL--  323 (371)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHH--
Confidence            999999999999999999999987654432222111      1111   00000000000   000000011111111  


Q ss_pred             hhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCC-CHHHHHHHHHHHHHhcC
Q 013228          367 GEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHD-NDEIHEKSVKILETYWC  420 (447)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~-~~~v~~~a~~~l~~~~~  420 (447)
                                    .-....|.+.|.++.|.++.... ++.+..+|.-+|..++.
T Consensus       324 --------------aLll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL~  364 (371)
T PF14664_consen  324 --------------ALLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELLH  364 (371)
T ss_pred             --------------HHHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence                          11345677899999999997665 88999999999987753

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.68  E-value=1.9e-05  Score=75.45  Aligned_cols=62  Identities=21%  Similarity=0.223  Sum_probs=38.2

Q ss_pred             HHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcC
Q 013228          211 PRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAG  281 (447)
Q Consensus       211 ~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~  281 (447)
                      +..-.++.+.++.+...++++.+.++-...  ..     ++++.|+.+|+++  ..++......+..++..
T Consensus       290 ~stkpLl~S~n~sVVmA~aql~y~lAP~~~--~~-----~i~kaLvrLLrs~--~~vqyvvL~nIa~~s~~  351 (968)
T KOG1060|consen  290 QSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ--VT-----KIAKALVRLLRSN--REVQYVVLQNIATISIK  351 (968)
T ss_pred             HhccHHHhcCCcHHHHHHHhHHHhhCCHHH--HH-----HHHHHHHHHHhcC--CcchhhhHHHHHHHHhc
Confidence            334455666778888888888888874332  11     3466788888764  44555555555555443

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.68  E-value=1.6e-05  Score=67.70  Aligned_cols=272  Identities=16%  Similarity=0.150  Sum_probs=175.8

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHH-hcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChh
Q 013228           84 VPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVL-SEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFD  162 (447)
Q Consensus        84 i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  162 (447)
                      ...++.++.+.+|.++..|+..+..+...  ..+.... +...++.+.+++ ...++  .+.|+.++.|++... .....
T Consensus         5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~-~~~~~--~~~a~~alVnlsq~~-~l~~~   78 (353)
T KOG2973|consen    5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLL-KDLDP--AEPAATALVNLSQKE-ELRKK   78 (353)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHc-cCccc--ccHHHHHHHHHHhhH-HHHHH
Confidence            34678899999999999999999999876  2332222 223466677777 44444  677899999999875 34444


Q ss_pred             hHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHH------hCcHHHHHHhcCCCCc--hhHhHHHHHHHH
Q 013228          163 QVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIE------AGVCPRLVELLGHPSP--SVLTRALQTVVN  234 (447)
Q Consensus       163 ~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~------~~~~~~L~~lL~~~~~--~v~~~a~~~l~~  234 (447)
                      ....++..++.++.++....-...+..+.|++...+.....+..      .|++.....+...+-.  .-....+.++.|
T Consensus        79 ll~~~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n  158 (353)
T KOG2973|consen   79 LLQDLLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN  158 (353)
T ss_pred             HHHHHHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence            44557777888888887888888999999999876654332221      3455555555543222  223445667777


Q ss_pred             hhcCChhhHHHHHhcCCh--HHHHHhhccCCchhHHH-HHHHHHHHHhcCCHHHHHHHH-HcCChHHHH-----------
Q 013228          235 IAAGDDFQTQCIINCGAL--PYLLGLLIHNHKKSIKT-DACWTISNITAGNSEHIQAVI-DAGLIGPLV-----------  299 (447)
Q Consensus       235 l~~~~~~~~~~~~~~~~l--~~l~~~l~~~~~~~v~~-~a~~~l~nl~~~~~~~~~~l~-~~~~~~~L~-----------  299 (447)
                      ++.... .+..+.+...+  ..+..+- +. +..+|+ ..+++|.|+|...+.+-..+- ...++|.++           
T Consensus       159 ls~~~~-gR~l~~~~k~~p~~kll~ft-~~-~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sE  235 (353)
T KOG2973|consen  159 LSQFEA-GRKLLLEPKRFPDQKLLPFT-SE-DSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSE  235 (353)
T ss_pred             Hhhhhh-hhhHhcchhhhhHhhhhccc-cc-chhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCH
Confidence            776544 34445554422  2233333 34 556665 467889998876543322221 112233222           


Q ss_pred             ----------HHHh-----cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccC-CCHHHHHHHHHHHHHH
Q 013228          300 ----------NLLQ-----NAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC-ADPEIVTVFLKGLEKI  363 (447)
Q Consensus       300 ----------~~l~-----~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~~~~~a~~~l~~l  363 (447)
                                .++.     .+++.+|..-..+|.-++.  +...++.+.+.|+.+.+-.+-+. .+++++.++......+
T Consensus       236 Edm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca--T~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~L  313 (353)
T KOG2973|consen  236 EDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA--TRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQML  313 (353)
T ss_pred             HHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh--hhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence                      2332     2478899999999999988  66788999899988888777665 5678888877776666


Q ss_pred             HHh
Q 013228          364 LKV  366 (447)
Q Consensus       364 ~~~  366 (447)
                      ++.
T Consensus       314 v~~  316 (353)
T KOG2973|consen  314 VRL  316 (353)
T ss_pred             Hhc
Confidence            654

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.68  E-value=5.7e-06  Score=70.36  Aligned_cols=270  Identities=15%  Similarity=0.209  Sum_probs=171.7

Q ss_pred             CcccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228            1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID   80 (447)
Q Consensus         1 lv~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (447)
                      +|.++.+.+|.++..|+..+..+....  ...-.--+...++.+.++++... +  ...|+.++.|++. ..+.++.+++
T Consensus         8 lv~ll~~~sP~v~~~AV~~l~~lt~~~--~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq-~~~l~~~ll~   81 (353)
T KOG2973|consen    8 LVELLHSLSPPVRKAAVEHLLGLTGRG--LQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQ-KEELRKKLLQ   81 (353)
T ss_pred             HHHHhccCChHHHHHHHHHHhhccccc--hhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHh-hHHHHHHHHH
Confidence            467889999999999999988887651  11111112346888999998887 4  6789999999999 7888888887


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcC-----CHHHHHHHh-ccccch-hHHHHHHHHHHHhc
Q 013228           81 HGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEE-----ALIPLLTQL-NKHAKL-SMLRIATWTLSNFC  153 (447)
Q Consensus        81 ~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~-----~l~~l~~~l-~~~~~~-~~~~~a~~~L~~l~  153 (447)
                      . .+..++..+.++...+.+..+..|+|++.+...+........     ++..++... ..+.+. .-..+.+.++.+++
T Consensus        82 ~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls  160 (353)
T KOG2973|consen   82 D-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLS  160 (353)
T ss_pred             H-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHh
Confidence            7 788888888887778888999999999998877665544322     333333333 222221 23455777888888


Q ss_pred             CCCCCCChhhHhhhHH--HHHHhhccCChhHHHH-HHHHHHHhccCCcHHHHHHHHh--CcHHHHH--------------
Q 013228          154 AGKPKPIFDQVRPALP--ALAQLVHSNDKEVMTD-ACRALFYLSEGTNDEIQAVIEA--GVCPRLV--------------  214 (447)
Q Consensus       154 ~~~~~~~~~~~~~~l~--~l~~ll~~~~~~v~~~-al~~l~~l~~~~~~~~~~~~~~--~~~~~L~--------------  214 (447)
                      +....+........+|  .+..+-. .+..+|.. .+..|.|.+...... ..+++.  .+++.++              
T Consensus       161 ~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h-~~lL~e~~~lLp~iLlPlagpee~sEEdm  238 (353)
T KOG2973|consen  161 QFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLH-EVLLDESINLLPAILLPLAGPEELSEEDM  238 (353)
T ss_pred             hhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhH-HHHhcchHHHHHHHHhhcCCccccCHHHH
Confidence            7753333333322222  3334433 56666544 567788877543332 222221  2333322              


Q ss_pred             -------HhcC-----CCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc
Q 013228          215 -------ELLG-----HPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA  280 (447)
Q Consensus       215 -------~lL~-----~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~  280 (447)
                             +.|.     .+++.+|..-+.+|.-+|.... .++.+...|+.+.+-.+-+...+++++..+-.....+..
T Consensus       239 ~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~-GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~  315 (353)
T KOG2973|consen  239 AKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA-GREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR  315 (353)
T ss_pred             hcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH-hHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence                   2221     2567899999999998887444 557777777777777766665466666554444444433

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.66  E-value=5.8e-06  Score=80.35  Aligned_cols=336  Identities=15%  Similarity=0.148  Sum_probs=180.5

Q ss_pred             HHHHHHHHHHHHHHHccCCCCchh-hhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh-HHHHHhCCChHHH
Q 013228           10 NNMQLEATTHIRKLLSNARSAPTE-EVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSED-TKVVIDHGAVPIF   87 (447)
Q Consensus        10 ~~~~~~a~~~l~~l~~~~~~~~~~-~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~L   87 (447)
                      +-.+..|++++..++...  -... .-+-..+++.+...+.... ...+...+.++-.+....... .....+ -++..+
T Consensus       623 EiTRl~AvkAlt~Ia~S~--l~i~l~~~l~~il~~l~~flrK~~-r~lr~~~l~a~~~L~~~~~~~~~~~~~e-~vL~el  698 (1233)
T KOG1824|consen  623 EITRLTAVKALTLIAMSP--LDIDLSPVLTEILPELASFLRKNQ-RALRLATLTALDKLVKNYSDSIPAELLE-AVLVEL  698 (1233)
T ss_pred             hhHHHHHHHHHHHHHhcc--ceeehhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccccHHHHH-HHHHHh
Confidence            445555555555555431  1111 1112234555555555554 455555555555444321111 111111 233444


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccch----------------------------
Q 013228           88 VKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKL----------------------------  139 (447)
Q Consensus        88 ~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~----------------------------  139 (447)
                      ..++...+..+-+.++.++..+....+..- .-....+++.++.++++..=.                            
T Consensus       699 ~~Lisesdlhvt~~a~~~L~tl~~~~ps~l-~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~  777 (1233)
T KOG1824|consen  699 PPLISESDLHVTQLAVAFLTTLAIIQPSSL-LKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLL  777 (1233)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhcccHHH-HHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHH
Confidence            455556677888888888888887666432 222344667777776321100                            


Q ss_pred             -----------------hHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhc--cCChhHHHHHHHHHHHhccCCcHH
Q 013228          140 -----------------SMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVH--SNDKEVMTDACRALFYLSEGTNDE  200 (447)
Q Consensus       140 -----------------~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~--~~~~~v~~~al~~l~~l~~~~~~~  200 (447)
                                       ......+.+...++...+...    ......+..-++  ..+..++.-++-.++.+..+.+..
T Consensus       778 s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s----~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s  853 (1233)
T KOG1824|consen  778 SLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKS----KSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLS  853 (1233)
T ss_pred             HHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccc----hhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCC
Confidence                             000001111111111111000    111112222222  224556666666666666543321


Q ss_pred             HHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChh-hHHHHHh---c-------------------------CC
Q 013228          201 IQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDF-QTQCIIN---C-------------------------GA  251 (447)
Q Consensus       201 ~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~-~~~~~~~---~-------------------------~~  251 (447)
                          -..++...+++.+++++++++.+|..+||+++.++-. +...+.+   .                         ..
T Consensus       854 ----~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~  929 (1233)
T KOG1824|consen  854 ----PQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPY  929 (1233)
T ss_pred             ----cchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhh
Confidence                1235566888999999999999999999999986532 2221111   0                         01


Q ss_pred             hHHHHHhh----ccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHH
Q 013228          252 LPYLLGLL----IHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHE  327 (447)
Q Consensus       252 l~~l~~~l----~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~  327 (447)
                      ++.+..+|    ... ....|.-.+.||+.++...|+        ..+|.|-..+.++.+..|..+..++...... .++
T Consensus       930 v~~IW~lL~k~cE~~-eegtR~vvAECLGkL~l~epe--------sLlpkL~~~~~S~a~~~rs~vvsavKfsisd-~p~  999 (1233)
T KOG1824|consen  930 VEKIWALLFKHCECA-EEGTRNVVAECLGKLVLIEPE--------SLLPKLKLLLRSEASNTRSSVVSAVKFSISD-QPQ  999 (1233)
T ss_pred             HHHHHHHHHHhcccc-hhhhHHHHHHHhhhHHhCChH--------HHHHHHHHHhcCCCcchhhhhhheeeeeecC-CCC
Confidence            11111111    222 334455555566666554444        2688898899999999999998888766554 333


Q ss_pred             HHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 013228          328 QIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEA  369 (447)
Q Consensus       328 ~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~  369 (447)
                      ....+. ...+..+..+++++|.+++..|+.++...+.+-+.
T Consensus      1000 ~id~~l-k~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKps 1040 (1233)
T KOG1824|consen 1000 PIDPLL-KQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPS 1040 (1233)
T ss_pred             ccCHHH-HHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHh
Confidence            333322 23577888899999999999999999998876544

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.65  E-value=2.5e-05  Score=74.66  Aligned_cols=291  Identities=17%  Similarity=0.166  Sum_probs=158.0

Q ss_pred             cccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCC
Q 013228            4 GVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGA   83 (447)
Q Consensus         4 ~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~   83 (447)
                      .|+++|+.+|..|++.|..+=-.        ++..=++-.+-++..++. +-||..|+.++-++-.-.++....+     
T Consensus       116 ~L~DpN~LiRasALRvlSsIRvp--------~IaPI~llAIk~~~~D~s-~yVRk~AA~AIpKLYsLd~e~k~qL-----  181 (968)
T KOG1060|consen  116 ALKDPNQLIRASALRVLSSIRVP--------MIAPIMLLAIKKAVTDPS-PYVRKTAAHAIPKLYSLDPEQKDQL-----  181 (968)
T ss_pred             hhcCCcHHHHHHHHHHHHhcchh--------hHHHHHHHHHHHHhcCCc-HHHHHHHHHhhHHHhcCChhhHHHH-----
Confidence            45666666666666665443111        010001122223445566 7888888888888776566655533     


Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCC-CCC---
Q 013228           84 VPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK-PKP---  159 (447)
Q Consensus        84 i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~---  159 (447)
                      ++.+-.+|.+.++.+.-.|+.++-.+|-+.   -+.+.  +-...+.+++.+-.++ -+......|...++.. +.+   
T Consensus       182 ~e~I~~LLaD~splVvgsAv~AF~evCPer---ldLIH--knyrklC~ll~dvdeW-gQvvlI~mL~RYAR~~l~~P~~~  255 (968)
T KOG1060|consen  182 EEVIKKLLADRSPLVVGSAVMAFEEVCPER---LDLIH--KNYRKLCRLLPDVDEW-GQVVLINMLTRYARHQLPDPTVV  255 (968)
T ss_pred             HHHHHHHhcCCCCcchhHHHHHHHHhchhH---HHHhh--HHHHHHHhhccchhhh-hHHHHHHHHHHHHHhcCCCcccc
Confidence            345666777788888888888888887432   12221  2345566666322221 1222333333333332 111   


Q ss_pred             ---------------------Ch----hhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHH
Q 013228          160 ---------------------IF----DQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLV  214 (447)
Q Consensus       160 ---------------------~~----~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~  214 (447)
                                           ..    .-..-+++..-.++.+.++.+...++.+++.++...  ...     .++..|+
T Consensus       256 ~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~--~~~-----~i~kaLv  328 (968)
T KOG1060|consen  256 DSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN--QVT-----KIAKALV  328 (968)
T ss_pred             ccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH--HHH-----HHHHHHH
Confidence                                 00    011334555666788899999999999999998433  222     4577888


Q ss_pred             HhcCCCCchhHhHHHHHHHHhhcCChhhHHHHH-------------------------hc----CChHHHHHhhccCCch
Q 013228          215 ELLGHPSPSVLTRALQTVVNIAAGDDFQTQCII-------------------------NC----GALPYLLGLLIHNHKK  265 (447)
Q Consensus       215 ~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-------------------------~~----~~l~~l~~~l~~~~~~  265 (447)
                      .+|+++ ..++...+..+..++...+......+                         +.    .+++-+...+++. +.
T Consensus       329 rLLrs~-~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~-d~  406 (968)
T KOG1060|consen  329 RLLRSN-REVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSS-DR  406 (968)
T ss_pred             HHHhcC-CcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcC-ch
Confidence            887653 45666666667666644332111111                         11    1122233333444 44


Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHH
Q 013228          266 SIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQ  328 (447)
Q Consensus       266 ~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~  328 (447)
                      .+...++.+|+.++.....     +....+..|+.++.+.+..|..+++..|..+......+.
T Consensus       407 ~faa~aV~AiGrCA~~~~s-----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h  464 (968)
T KOG1060|consen  407 SFAAAAVKAIGRCASRIGS-----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEH  464 (968)
T ss_pred             hHHHHHHHHHHHHHHhhCc-----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHH
Confidence            5566666666666543211     122245667777777777777777777777766543333

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=0.0003  Score=60.70  Aligned_cols=334  Identities=14%  Similarity=0.135  Sum_probs=216.5

Q ss_pred             cccCCCHHHHHHHHHHHHHHHccCCCCc---hhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228            4 GVWSDDNNMQLEATTHIRKLLSNARSAP---TEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID   80 (447)
Q Consensus         4 ~l~s~~~~~~~~a~~~l~~l~~~~~~~~---~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (447)
                      +|..++..++.-++..+..++.......   +..++..++++.++.++-.++ .++...|...+..++. .+.....+.+
T Consensus        90 GLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrial-fpaaleaiFe  167 (524)
T KOG4413|consen   90 GLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIAL-FPAALEAIFE  167 (524)
T ss_pred             cccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHh-cHHHHHHhcc
Confidence            5778888999999999999987642212   455668899999999999888 8999999999999998 7777777877


Q ss_pred             CCChHHHH--HhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCC
Q 013228           81 HGAVPIFV--KLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPK  158 (447)
Q Consensus        81 ~~~i~~L~--~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~  158 (447)
                      ++....+-  .+-...+.-.|..+...+-.+.+-++.....+...|.+..+..-++...|.-++.++......++.....
T Consensus       168 SellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHg  247 (524)
T KOG4413|consen  168 SELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHG  247 (524)
T ss_pred             cccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhh
Confidence            77665543  2333356677778888888898888888888888899999998885557777888888888888876544


Q ss_pred             CChhhHhhhHHHHHHhhcc--CChhHHHHHHHHHHHhccCCcHH---HHHHHHh--CcHHHHHHhcCCCCchhHhHHHHH
Q 013228          159 PIFDQVRPALPALAQLVHS--NDKEVMTDACRALFYLSEGTNDE---IQAVIEA--GVCPRLVELLGHPSPSVLTRALQT  231 (447)
Q Consensus       159 ~~~~~~~~~l~~l~~ll~~--~~~~v~~~al~~l~~l~~~~~~~---~~~~~~~--~~~~~L~~lL~~~~~~v~~~a~~~  231 (447)
                      .......+++..+...+..  ++|--.-.++...+.+.....-.   -+.+.+.  -.++.-...+..+++..+..|..+
T Consensus       248 reflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDa  327 (524)
T KOG4413|consen  248 REFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDA  327 (524)
T ss_pred             hhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHH
Confidence            4444457778877777753  33333333444333333211000   0111111  123344455667889999999999


Q ss_pred             HHHhhcCChhhHHHHHhcCC--hHHHH-HhhccCCchhHHHHHHHHHHHHhc---CCHHHH---------HH-HHH----
Q 013228          232 VVNIAAGDDFQTQCIINCGA--LPYLL-GLLIHNHKKSIKTDACWTISNITA---GNSEHI---------QA-VID----  291 (447)
Q Consensus       232 l~~l~~~~~~~~~~~~~~~~--l~~l~-~~l~~~~~~~v~~~a~~~l~nl~~---~~~~~~---------~~-l~~----  291 (447)
                      ++.+....+ ..+.+...|-  .+.++ .....+ ...-+..+..+|.+++.   -.++++         .. +.+    
T Consensus       328 lGilGSnte-GadlllkTgppaaehllarafdqn-ahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaq  405 (524)
T KOG4413|consen  328 LGILGSNTE-GADLLLKTGPPAAEHLLARAFDQN-AHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQ  405 (524)
T ss_pred             HHhccCCcc-hhHHHhccCChHHHHHHHHHhccc-ccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhh
Confidence            998876444 4444444433  22332 233222 23334566677777764   122211         11 111    


Q ss_pred             ---cCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHH-HHHcCChHHHHh
Q 013228          292 ---AGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKY-LVREGCIKPLCD  343 (447)
Q Consensus       292 ---~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~-l~~~~~l~~L~~  343 (447)
                         ..-+..+..+++.+.++++..+...+..++..  |...+. +...++++...+
T Consensus       406 stkldPleLFlgilqQpfpEihcAalktfTAiaaq--PWalkeifakeefieiVtD  459 (524)
T KOG4413|consen  406 STKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQ--PWALKEIFAKEEFIEIVTD  459 (524)
T ss_pred             ccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcC--cHHHHHHhcCccceeeecc
Confidence               13355666777788999999999999988873  344433 334455554443

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.58  E-value=1.3e-06  Score=64.64  Aligned_cols=154  Identities=8%  Similarity=0.041  Sum_probs=127.9

Q ss_pred             ChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHH
Q 013228          251 ALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIK  330 (447)
Q Consensus       251 ~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~  330 (447)
                      .+..|+.-.....+.+.+.....-|.|++.+ |-+...+.+.++++..+..+..++..+...++..|+|++.  ++...+
T Consensus        17 Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~--d~~n~~   93 (173)
T KOG4646|consen   17 YLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL--DKTNAK   93 (173)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc--ChHHHH
Confidence            4455666565555888899888888888654 6778889999999999999999999999999999999998  667788


Q ss_pred             HHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHH
Q 013228          331 YLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEK  410 (447)
Q Consensus       331 ~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~  410 (447)
                      .+.+.+.++.++..+.++...++..++..+..+...+..             .+..+.....++.++....+.+.+.+..
T Consensus        94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt-------------~r~ell~p~Vv~~v~r~~~s~s~~~rnL  160 (173)
T KOG4646|consen   94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERT-------------ERDELLSPAVVRTVQRWRESKSHDERNL  160 (173)
T ss_pred             HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccc-------------hhHHhccHHHHHHHHHHHHHhhHHHHHH
Confidence            889999999999999999999999999888887655443             3566777788888888888888888888


Q ss_pred             HHHHHHHhcC
Q 013228          411 SVKILETYWC  420 (447)
Q Consensus       411 a~~~l~~~~~  420 (447)
                      |...++++..
T Consensus       161 a~~fl~~~~~  170 (173)
T KOG4646|consen  161 ASAFLDKHVH  170 (173)
T ss_pred             HHHHHHhhcc
Confidence            8888887754

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.57  E-value=0.00011  Score=69.60  Aligned_cols=348  Identities=17%  Similarity=0.149  Sum_probs=203.2

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCChhHHH
Q 013228           41 VPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLAS--PSDDIREQAVCALGNVAADSARCRD  118 (447)
Q Consensus        41 v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~i~~~a~~~L~~l~~~~~~~~~  118 (447)
                      +..+.+=|.+.+ +.....|+.+++|+..  .+++..+..     -+-++|.+  ..+-+++.++.+|..|-+.+|.   
T Consensus       113 in~iknDL~srn-~~fv~LAL~~I~niG~--re~~ea~~~-----DI~KlLvS~~~~~~vkqkaALclL~L~r~spD---  181 (938)
T KOG1077|consen  113 INSIKNDLSSRN-PTFVCLALHCIANIGS--REMAEAFAD-----DIPKLLVSGSSMDYVKQKAALCLLRLFRKSPD---  181 (938)
T ss_pred             HHHHHhhhhcCC-cHHHHHHHHHHHhhcc--HhHHHHhhh-----hhHHHHhCCcchHHHHHHHHHHHHHHHhcCcc---
Confidence            334445556667 7888899999999875  455554442     23355554  3467888888888888876653   


Q ss_pred             HHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhcc-------------CChhHHHH
Q 013228          119 LVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHS-------------NDKEVMTD  185 (447)
Q Consensus       119 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~-------------~~~~v~~~  185 (447)
                      .+-..+....++.+| .+.+-.+...+...+..++...+..........+..|.+....             +.|=++..
T Consensus       182 l~~~~~W~~riv~LL-~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vK  260 (938)
T KOG1077|consen  182 LVNPGEWAQRIVHLL-DDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVK  260 (938)
T ss_pred             ccChhhHHHHHHHHh-CccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHH
Confidence            333334577888888 6666777777777888888766444433334444444443331             33556677


Q ss_pred             HHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC--Cc-----hhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHh
Q 013228          186 ACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHP--SP-----SVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGL  258 (447)
Q Consensus       186 al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~--~~-----~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~  258 (447)
                      +++.|.+.-...+.... ..-..+++.++...+.+  +.     ..+...+.-.-+++.+.+...+.+.  ..+..|-++
T Consensus       261 l~rlLq~~p~~~D~~~r-~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~f  337 (938)
T KOG1077|consen  261 LLRLLQIYPTPEDPSTR-ARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQF  337 (938)
T ss_pred             HHHHHHhCCCCCCchHH-HHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHH
Confidence            77777776432222111 11113344444444421  11     1222333333344433332223222  367788888


Q ss_pred             hccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCC
Q 013228          259 LIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQ-NAEFDIKNWAARAISNATFGGTHEQIKYLVREGC  337 (447)
Q Consensus       259 l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~  337 (447)
                      +.+. ...+|.-|...++.++... . ....++.. .+.++..|+ ..|..+|+.|+..|..|+..++.   +.     +
T Consensus       338 ls~r-E~NiRYLaLEsm~~L~ss~-~-s~davK~h-~d~Ii~sLkterDvSirrravDLLY~mcD~~Na---k~-----I  405 (938)
T KOG1077|consen  338 LSHR-ETNIRYLALESMCKLASSE-F-SIDAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNA---KQ-----I  405 (938)
T ss_pred             hhcc-cccchhhhHHHHHHHHhcc-c-hHHHHHHH-HHHHHHHhccccchHHHHHHHHHHHHHhchhhH---HH-----H
Confidence            9888 8899999999999888752 2 22333332 667788888 67999999999999999976443   33     4


Q ss_pred             hHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHH------HhchHHHHHHHhcCCCHHHHHHH
Q 013228          338 IKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVE------EAEGLEKIENLRSHDNDEIHEKS  411 (447)
Q Consensus       338 l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~~~l~~l~~~~~~~v~~~a  411 (447)
                      ++-|.++|.+.+..+++...--+.-+.+.-....     .+........+.      ..+.+.++.++. -.+++++..|
T Consensus       406 V~elLqYL~tAd~sireeivlKvAILaEKyAtDy-----~WyVdviLqLiriagd~vsdeVW~RvvQiV-vNnedlq~ya  479 (938)
T KOG1077|consen  406 VAELLQYLETADYSIREEIVLKVAILAEKYATDY-----SWYVDVILQLIRIAGDYVSDEVWYRVVQIV-VNNEDLQGYA  479 (938)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCc-----chhHHHHHHHHHHhcccccHHHHHHhheeE-ecchhhhHHH
Confidence            6778888888888777654333333333221111     122222223332      223344444432 2468888888


Q ss_pred             HHHHHHhcCC
Q 013228          412 VKILETYWCG  421 (447)
Q Consensus       412 ~~~l~~~~~~  421 (447)
                      ..-+..|++.
T Consensus       480 ak~~fe~Lq~  489 (938)
T KOG1077|consen  480 AKRLFEYLQK  489 (938)
T ss_pred             HHHHHHHHhh
Confidence            8877777653

>PF05536 Neurochondrin: Neurochondrin

Probab=98.55  E-value=0.0002  Score=69.17  Aligned_cols=378  Identities=15%  Similarity=0.105  Sum_probs=224.6

Q ss_pred             cccccCCCHHHHHHHHHHHHHHHccCCC--CchhhhhccCCHHHHHHhhcCCC------CHHHHHHHHHHHHHHcCCChh
Q 013228            2 VAGVWSDDNNMQLEATTHIRKLLSNARS--APTEEVIPFGVVPRFVEFLMRED------YPQLQFEAAWALKNIVSGTSE   73 (447)
Q Consensus         2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~--~~~~~~~~~~~v~~L~~ll~~~~------~~~v~~~a~~~L~~l~~~~~~   73 (447)
                      +++|++.+.+.++.++..+.+++.....  ...+.+.+.=+.+.+-++|.++.      ....+.-|+.+|..++. .++
T Consensus        11 ~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~-~~~   89 (543)
T PF05536_consen   11 LSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR-DPE   89 (543)
T ss_pred             HHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC-Chh
Confidence            3567888888888888888898876421  12345777777888889998732      25678888999999998 566


Q ss_pred             hHHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHh
Q 013228           74 DTKVVIDHGAVPIFVKLLASPSD-DIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNF  152 (447)
Q Consensus        74 ~~~~~~~~~~i~~L~~ll~~~~~-~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l  152 (447)
                      ....---.+-||.|+..+.+.+. .+...|..+|..++.. +..++.+.+.|.++.+.+.+.+  .+...+.++.++.++
T Consensus        90 ~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~Al~lL~~L  166 (543)
T PF05536_consen   90 LASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS-PEGAKALLESGAVPALCEIIPN--QSFQMEIALNLLLNL  166 (543)
T ss_pred             hhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHhHHHHHhcCCHHHHHHHHHh--CcchHHHHHHHHHHH
Confidence            54322222568999999988766 9999999999999955 4568888899999999999954  455677888888887


Q ss_pred             cCCCCCC----ChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHH-HHHHHH----hCcHHHHHHhcCC-CCc
Q 013228          153 CAGKPKP----IFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDE-IQAVIE----AGVCPRLVELLGH-PSP  222 (447)
Q Consensus       153 ~~~~~~~----~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~-~~~~~~----~~~~~~L~~lL~~-~~~  222 (447)
                      +......    .......+++.+...+.......+-..+..|..+....+.. ......    ..+...+..++++ ..+
T Consensus       167 ls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~  246 (543)
T PF05536_consen  167 LSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTP  246 (543)
T ss_pred             HHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCH
Confidence            7654221    22223456667777777666777777888888887655311 111111    2334445555544 445


Q ss_pred             hhHhHHHHHHHHhhcCCh-------------hhHHHHHhcCC------hHHHHHhhccCCchhHH--HHHHHH-----HH
Q 013228          223 SVLTRALQTVVNIAAGDD-------------FQTQCIINCGA------LPYLLGLLIHNHKKSIK--TDACWT-----IS  276 (447)
Q Consensus       223 ~v~~~a~~~l~~l~~~~~-------------~~~~~~~~~~~------l~~l~~~l~~~~~~~v~--~~a~~~-----l~  276 (447)
                      .-|..++...+.+.....             .....+++.-.      ++.+......+......  -.+|+.     +.
T Consensus       247 ~~R~~al~Laa~Ll~~~G~~wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~cf~ilE~~I~  326 (543)
T PF05536_consen  247 SQRDPALNLAASLLDLLGPEWLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQRLLASCFSILEHFIG  326 (543)
T ss_pred             HHHHHHHHHHHHHHHHhChHhhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHHHHHHHHHHHH
Confidence            667777766666653211             01111111111      11111111111011111  112221     12


Q ss_pred             HHhc--------CCHHHHHHHHH--cCChHHHHHHHhc------CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHH
Q 013228          277 NITA--------GNSEHIQAVID--AGLIGPLVNLLQN------AEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKP  340 (447)
Q Consensus       277 nl~~--------~~~~~~~~l~~--~~~~~~L~~~l~~------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~  340 (447)
                      .++.        -.++....+..  .+.+...+++|..      .++.....+.++|+......+...++.+  .|.++.
T Consensus       327 ~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe~~~lr~~v--~~Ll~~  404 (543)
T PF05536_consen  327 YLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEETSALRKEV--YGLLPF  404 (543)
T ss_pred             HHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhChHHHHHHH--HHHHHH
Confidence            2222        12333333332  2345556666652      2333667788888877665444444444  368899


Q ss_pred             HHhhccCCCH----------HHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHH
Q 013228          341 LCDLLLCADP----------EIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENL  399 (447)
Q Consensus       341 L~~ll~~~~~----------~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l  399 (447)
                      ++.+.+....          +.+...+=+|..+.....              .++.+...|+.+.+.+.
T Consensus       405 ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e~~--------------gr~~l~~~~g~~~l~~~  459 (543)
T PF05536_consen  405 LLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAEEE--------------GRKILLSNGGWKLLCDD  459 (543)
T ss_pred             HHHHHhhhhhhcccccccchhHHHHHHHHHhhhhccHH--------------HHHHHHhCCcHHHHHHH
Confidence            9988865432          344455555555543222              47778888887776653

>TIGR02270 conserved hypothetical protein

Probab=98.54  E-value=2.1e-05  Score=72.76  Aligned_cols=188  Identities=19%  Similarity=0.095  Sum_probs=101.2

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhh
Q 013228           84 VPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQ  163 (447)
Q Consensus        84 i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  163 (447)
                      +..|+..|.+.++.++..+..+|+.+-..           ...+.|+..+ .+.++.++..++.++....          
T Consensus        88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~~-----------~a~~~L~~~L-~~~~p~vR~aal~al~~r~----------  145 (410)
T TIGR02270        88 LRSVLAVLQAGPEGLCAGIQAALGWLGGR-----------QAEPWLEPLL-AASEPPGRAIGLAALGAHR----------  145 (410)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhcCCch-----------HHHHHHHHHh-cCCChHHHHHHHHHHHhhc----------
Confidence            45555666555555666666665544211           1234445555 4445555555554444311          


Q ss_pred             HhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhH
Q 013228          164 VRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQT  243 (447)
Q Consensus       164 ~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~  243 (447)
                       ....+.+..+|++.++.++..++.+++.+-..           ..++.|...+.+.++.||..|+..++.+-.  +...
T Consensus       146 -~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~A~  211 (410)
T TIGR02270       146 -HDPGPALEAALTHEDALVRAAALRALGELPRR-----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--RLAW  211 (410)
T ss_pred             -cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--HhHH
Confidence             11233455555555666666666665554321           123334444555555666555555544421  1000


Q ss_pred             HH------------------HH----hcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHH
Q 013228          244 QC------------------II----NCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNL  301 (447)
Q Consensus       244 ~~------------------~~----~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~  301 (447)
                      ..                  ++    ....++.|..+++++   .++..++++++.+-.  +.         .++.|+..
T Consensus       212 ~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d~---~vr~~a~~AlG~lg~--p~---------av~~L~~~  277 (410)
T TIGR02270       212 GVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQAA---ATRREALRAVGLVGD--VE---------AAPWCLEA  277 (410)
T ss_pred             HHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcCh---hhHHHHHHHHHHcCC--cc---------hHHHHHHH
Confidence            00                  00    013455666666655   388888888887633  22         67778887


Q ss_pred             HhcCchhHHHHHHHHHHHhcCC
Q 013228          302 LQNAEFDIKNWAARAISNATFG  323 (447)
Q Consensus       302 l~~~~~~v~~~a~~aL~~l~~~  323 (447)
                      +.  ++.++..|.+++..++.-
T Consensus       278 l~--d~~~aR~A~eA~~~ItG~  297 (410)
T TIGR02270       278 MR--EPPWARLAGEAFSLITGM  297 (410)
T ss_pred             hc--CcHHHHHHHHHHHHhhCC
Confidence            76  344999999999999874

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>TIGR02270 conserved hypothetical protein

Probab=98.50  E-value=8.9e-05  Score=68.61  Aligned_cols=221  Identities=17%  Similarity=0.013  Sum_probs=152.0

Q ss_pred             CChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCC
Q 013228           82 GAVPIFVKLLA-SPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPI  160 (447)
Q Consensus        82 ~~i~~L~~ll~-~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~  160 (447)
                      .+++.++..+. +++.+++..+++++...  +.+.         .+..++..| .+.++.++..+..+|..+-.      
T Consensus        54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~--~~~~---------~~~~L~~~L-~d~~~~vr~aaa~ALg~i~~------  115 (410)
T TIGR02270        54 AATELLVSALAEADEPGRVACAALALLAQ--EDAL---------DLRSVLAVL-QAGPEGLCAGIQAALGWLGG------  115 (410)
T ss_pred             hHHHHHHHHHhhCCChhHHHHHHHHHhcc--CChH---------HHHHHHHHh-cCCCHHHHHHHHHHHhcCCc------
Confidence            35788888884 56788887766666432  2221         278888888 67788899999999975432      


Q ss_pred             hhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCCh
Q 013228          161 FDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD  240 (447)
Q Consensus       161 ~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~  240 (447)
                          ....+.|..++.+.++.++..++.++....            ....+.+..+|++.++.++..|+++++.+...  
T Consensus       116 ----~~a~~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~--  177 (410)
T TIGR02270       116 ----RQAEPWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAALTHEDALVRAAALRALGELPRR--  177 (410)
T ss_pred             ----hHHHHHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc--
Confidence                456788999999999999998887776522            12346788889999999999999999976632  


Q ss_pred             hhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH----c------------------CChHHH
Q 013228          241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVID----A------------------GLIGPL  298 (447)
Q Consensus       241 ~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~----~------------------~~~~~L  298 (447)
                               ..++.|...+.+. ++.||..|+++++.+..  ++....+..    .                  ..++.|
T Consensus       178 ---------~a~~~L~~al~d~-~~~VR~aA~~al~~lG~--~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L  245 (410)
T TIGR02270       178 ---------LSESTLRLYLRDS-DPEVRFAALEAGLLAGS--RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWL  245 (410)
T ss_pred             ---------cchHHHHHHHcCC-CHHHHHHHHHHHHHcCC--HhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHH
Confidence                     3455677778888 99999999999977632  222211111    1                  123344


Q ss_pred             HHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 013228          299 VNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKV  366 (447)
Q Consensus       299 ~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~  366 (447)
                      ..+++.  +.++..++++++.+-..            ..++.|+..+.+..  +...|-+++..+.-.
T Consensus       246 ~~ll~d--~~vr~~a~~AlG~lg~p------------~av~~L~~~l~d~~--~aR~A~eA~~~ItG~  297 (410)
T TIGR02270       246 RELLQA--AATRREALRAVGLVGDV------------EAAPWCLEAMREPP--WARLAGEAFSLITGM  297 (410)
T ss_pred             HHHhcC--hhhHHHHHHHHHHcCCc------------chHHHHHHHhcCcH--HHHHHHHHHHHhhCC
Confidence            444443  34777777777766542            24666666666544  777777777777653

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.48  E-value=2.9e-05  Score=66.39  Aligned_cols=240  Identities=16%  Similarity=0.147  Sum_probs=149.8

Q ss_pred             HHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC--CCchhHhHHHHHHHHhhcCChhhHHH
Q 013228          168 LPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH--PSPSVLTRALQTVVNIAAGDDFQTQC  245 (447)
Q Consensus       168 l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~--~~~~v~~~a~~~l~~l~~~~~~~~~~  245 (447)
                      ...|-++++.-++-.+.-|+.++.++......+.....+...-..++.+++.  ....++..++.+++-++.... ..+.
T Consensus       151 leyLgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~-~aqd  229 (432)
T COG5231         151 LEYLGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKE-CAQD  229 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHH-HHHH
Confidence            3444455565566678888899999887665554444444555667777765  456788899999998886443 3322


Q ss_pred             HHh-cCChHHHHHhhccCCchhHHHHHHHHHHHHhcCC-HHHHHHHHH-cCChHHHHHHHhc--CchhHHHHHHHHHHHh
Q 013228          246 IIN-CGALPYLLGLLIHNHKKSIKTDACWTISNITAGN-SEHIQAVID-AGLIGPLVNLLQN--AEFDIKNWAARAISNA  320 (447)
Q Consensus       246 ~~~-~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~-~~~~~~l~~-~~~~~~L~~~l~~--~~~~v~~~a~~aL~~l  320 (447)
                      +-+ ...+..++.+.+..-...+-+-++.++.|++... ...+....- .++.+..-.+.+.  .|.+++...-..=..+
T Consensus       230 i~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l  309 (432)
T COG5231         230 IDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRL  309 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence            211 1355667777765546778888999999998843 344444443 3355544444442  3555443222211111


Q ss_pred             cC---------------------CC--------CHHHHHHHHHc--CChHHHHhhccCCCHH-HHHHHHHHHHHHHHhhh
Q 013228          321 TF---------------------GG--------THEQIKYLVRE--GCIKPLCDLLLCADPE-IVTVFLKGLEKILKVGE  368 (447)
Q Consensus       321 ~~---------------------~~--------~~~~~~~l~~~--~~l~~L~~ll~~~~~~-~~~~a~~~l~~l~~~~~  368 (447)
                      -.                     ..        -..+...+...  .++..|..++...++. ....|+.-+..+++..+
T Consensus       310 ~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~P  389 (432)
T COG5231         310 VQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASP  389 (432)
T ss_pred             HhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCc
Confidence            11                     00        01123333332  3467777777776665 45556666777776544


Q ss_pred             hhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 013228          369 AEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWCG  421 (447)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  421 (447)
                      .             ....+...|+-+.+.+|++|++++|+-.|...+..+...
T Consensus       390 E-------------~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~  429 (432)
T COG5231         390 E-------------INAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISS  429 (432)
T ss_pred             h-------------HHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhh
Confidence            4             367888899999999999999999999999999887543

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.46  E-value=4.3e-05  Score=78.19  Aligned_cols=333  Identities=13%  Similarity=0.133  Sum_probs=198.7

Q ss_pred             ccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcC-CChhhHHHHHhC
Q 013228            3 AGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVS-GTSEDTKVVIDH   81 (447)
Q Consensus         3 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~   81 (447)
                      ..+.|++++.|..++--|..+...-............+...+..+|.+.+ +-+|..|.+-|+-+-. ++...++.+   
T Consensus       825 ~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~d-Ef~QDvAsrGlglVYelgd~~~k~~L---  900 (1702)
T KOG0915|consen  825 TLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDND-EFSQDVASRGLGLVYELGDSSLKKSL---  900 (1702)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccH-HHHHHHHhcCceEEEecCCchhHHHH---
Confidence            46788888888777655555554432222222223346688888998888 7888888877765432 223333333   


Q ss_pred             CChHHHHHhhCC---------CCHHHH-------------HHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccch
Q 013228           82 GAVPIFVKLLAS---------PSDDIR-------------EQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKL  139 (447)
Q Consensus        82 ~~i~~L~~ll~~---------~~~~i~-------------~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~  139 (447)
                        ++.|+.-|..         .+.++.             -..-.=|++|+.+-.       +-+.+-..+++-+++...
T Consensus       901 --V~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~-------qPdLVYKFM~LAnh~A~w  971 (1702)
T KOG0915|consen  901 --VDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLG-------QPDLVYKFMQLANHNATW  971 (1702)
T ss_pred             --HHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcC-------ChHHHHHHHHHhhhhchh
Confidence              3334443321         111221             122234455553221       112244556666555566


Q ss_pred             hHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC
Q 013228          140 SMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH  219 (447)
Q Consensus       140 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~  219 (447)
                      .-+.-|++.+..++.............++|.|.+.=-+++..|+......-..+...+..... -.-..+++-|+.-+.+
T Consensus       972 nSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd-~y~neIl~eLL~~lt~ 1050 (1702)
T KOG0915|consen  972 NSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVD-EYLNEILDELLVNLTS 1050 (1702)
T ss_pred             hcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHH-HHHHHHHHHHHHhccc
Confidence            677778888888887764444445577888888888888998887655444444443333222 2334678888888999


Q ss_pred             CCchhHhHHHHHHHHhhcCChhh--HHHHHhcCChHHHHHhhccCCchhHHHHH---HHHHHHHhcC-----CHHHHHHH
Q 013228          220 PSPSVLTRALQTVVNIAAGDDFQ--TQCIINCGALPYLLGLLIHNHKKSIKTDA---CWTISNITAG-----NSEHIQAV  289 (447)
Q Consensus       220 ~~~~v~~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~l~~~l~~~~~~~v~~~a---~~~l~nl~~~-----~~~~~~~l  289 (447)
                      ..+++|+.+|.++..|..+.+..  .+.+-  .+...+.+.+++- ...+|..|   +.+++.+|..     ++..-+.+
T Consensus      1051 kewRVReasclAL~dLl~g~~~~~~~e~lp--elw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~ 1127 (1702)
T KOG0915|consen 1051 KEWRVREASCLALADLLQGRPFDQVKEKLP--ELWEAAFRVMDDI-KESVREAADKAARALSKLCVRICDVTNGAKGKEA 1127 (1702)
T ss_pred             hhHHHHHHHHHHHHHHHcCCChHHHHHHHH--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHH
Confidence            99999999999999999887632  22222  3555666666665 66677654   5556666541     11112222


Q ss_pred             HHcCChHHHHHH-HhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHH
Q 013228          290 IDAGLIGPLVNL-LQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTV  355 (447)
Q Consensus       290 ~~~~~~~~L~~~-l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~  355 (447)
                      ++. ++|.|++- +.+.-+++|+.++..+..++..........+.  ..++.|.+....-.+.+..+
T Consensus      1128 l~~-iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~--~LIp~ll~~~s~lE~~vLnY 1191 (1702)
T KOG0915|consen 1128 LDI-ILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFP--KLIPLLLNAYSELEPQVLNY 1191 (1702)
T ss_pred             HHH-HHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhh--HHHHHHHHHccccchHHHHH
Confidence            222 55555442 11567899999999999999875544333332  36778888887766655544

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.46  E-value=1.6e-05  Score=74.45  Aligned_cols=220  Identities=11%  Similarity=0.064  Sum_probs=146.4

Q ss_pred             HHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCC---c--HHHHH
Q 013228          129 LLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGT---N--DEIQA  203 (447)
Q Consensus       129 l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~---~--~~~~~  203 (447)
                      +..+. .+.|..++..|+.++..|....     .....+....++.+.+.+..|+..|+..++-.....   .  ...+.
T Consensus       203 l~~~~-~~~D~~Vrt~A~eglL~L~eg~-----kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~  276 (823)
T KOG2259|consen  203 LIYLE-HDQDFRVRTHAVEGLLALSEGF-----KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE  276 (823)
T ss_pred             HHHHh-cCCCcchHHHHHHHHHhhcccc-----cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence            44444 6777788888888887777532     222445677888999999999999877665444221   1  11111


Q ss_pred             HHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHH--hc-
Q 013228          204 VIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNI--TA-  280 (447)
Q Consensus       204 ~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl--~~-  280 (447)
                      -....++..+...+.+.+..+|..|...|+.+-.-+++.....++..++..+-..=...      +......++-  ++ 
T Consensus       277 kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ah------krpk~l~s~GewSsG  350 (823)
T KOG2259|consen  277 KLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAH------KRPKALYSSGEWSSG  350 (823)
T ss_pred             hhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcc------cchHHHHhcCCcccC
Confidence            12234678889999999999999999999988776665555444433333221111000      0011111111  00 


Q ss_pred             ----------CCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCH
Q 013228          281 ----------GNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADP  350 (447)
Q Consensus       281 ----------~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~  350 (447)
                                ...+.-..++..|..-.++.-++++-.+||..|...++.++... |.....     .++.|+.++.++..
T Consensus       351 k~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss-P~FA~~-----aldfLvDMfNDE~~  424 (823)
T KOG2259|consen  351 KEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS-PGFAVR-----ALDFLVDMFNDEIE  424 (823)
T ss_pred             ccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC-CCcHHH-----HHHHHHHHhccHHH
Confidence                      01122345677888888888888888999999999999999863 333333     58999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 013228          351 EIVTVFLKGLEKILKV  366 (447)
Q Consensus       351 ~~~~~a~~~l~~l~~~  366 (447)
                      .++..|+.+|..+...
T Consensus       425 ~VRL~ai~aL~~Is~~  440 (823)
T KOG2259|consen  425 VVRLKAIFALTMISVH  440 (823)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998865

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.45  E-value=8.5e-05  Score=76.16  Aligned_cols=344  Identities=16%  Similarity=0.172  Sum_probs=207.8

Q ss_pred             HHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhC
Q 013228           13 QLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLA   92 (447)
Q Consensus        13 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~   92 (447)
                      .+....-|+++++.-++        .+.|-.++++-++.-...-+..|+.-++.++....+..+.... ..||.|.++=-
T Consensus       938 ~isTYKELc~LASdl~q--------PdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~-kLIPrLyRY~y 1008 (1702)
T KOG0915|consen  938 KISTYKELCNLASDLGQ--------PDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLK-KLIPRLYRYQY 1008 (1702)
T ss_pred             cchHHHHHHHHHhhcCC--------hHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHH-HhhHHHhhhcc
Confidence            34455667777776322        2356677787777654577888999999998743332222222 46788888877


Q ss_pred             CCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhh-HhhhHHHH
Q 013228           93 SPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQ-VRPALPAL  171 (447)
Q Consensus        93 ~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~l~~l  171 (447)
                      +++..++.....+...|..++...-+... ..++..|+..+ .+....+++.+|.+|..|.+..+...... ...+-..+
T Consensus      1009 DP~~~Vq~aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~~l-t~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~ 1086 (1702)
T KOG0915|consen 1009 DPDKKVQDAMTSIWNALITDSKKVVDEYL-NEILDELLVNL-TSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAA 1086 (1702)
T ss_pred             CCcHHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHHHhc-cchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence            89999998888888888888665544433 24667777777 67788999999999999998864333221 23333344


Q ss_pred             HHhhccCChhHHHH---HHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcC-----CCCchhHhHHHHHHHHhhcCChhhH
Q 013228          172 AQLVHSNDKEVMTD---ACRALFYLSEGTNDEIQAVIEAGVCPRLVELLG-----HPSPSVLTRALQTVVNIAAGDDFQT  243 (447)
Q Consensus       172 ~~ll~~~~~~v~~~---al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~-----~~~~~v~~~a~~~l~~l~~~~~~~~  243 (447)
                      ++.+.+-.+.||..   ++.+++.++....+.....-...++..++.+|-     ++-+++|.-++.++..++.+.+...
T Consensus      1087 fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~l 1166 (1702)
T KOG0915|consen 1087 FRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKEL 1166 (1702)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhh
Confidence            44444445666665   455666555321111111111234455555542     4557899999999999998776433


Q ss_pred             HHHHhcCChHHHHHhhccCCchhHH-----------HHHHHHHH-HHhcCCH--HHHHHHHH-------cCChHHHHHHH
Q 013228          244 QCIINCGALPYLLGLLIHNHKKSIK-----------TDACWTIS-NITAGNS--EHIQAVID-------AGLIGPLVNLL  302 (447)
Q Consensus       244 ~~~~~~~~l~~l~~~l~~~~~~~v~-----------~~a~~~l~-nl~~~~~--~~~~~l~~-------~~~~~~L~~~l  302 (447)
                      ... -...++.|+.....- .+.+-           .+|.-.+. +.+.++|  +.+..+++       ..++|.+.+++
T Consensus      1167 kP~-~~~LIp~ll~~~s~l-E~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~ 1244 (1702)
T KOG0915|consen 1167 KPH-FPKLIPLLLNAYSEL-EPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELV 1244 (1702)
T ss_pred             cch-hhHHHHHHHHHcccc-chHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            321 124566666666554 33332           22222222 2222222  22222221       23677777777


Q ss_pred             hcC-chhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhh
Q 013228          303 QNA-EFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEK  371 (447)
Q Consensus       303 ~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~  371 (447)
                      ..+ ....|.-++..+.-++.....+...+  ....+..+...+++.++.++.+...+...+++.....+
T Consensus      1245 R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~--sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq 1312 (1702)
T KOG0915|consen 1245 RGSVGLGTKVGCASFISLLVQRLGSEMTPY--SGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQ 1312 (1702)
T ss_pred             hccCCCCcchhHHHHHHHHHHHhccccCcc--hhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHH
Confidence            754 45666667777766665322222221  12357778888899999999999999999998765543

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.42  E-value=0.00015  Score=66.59  Aligned_cols=244  Identities=27%  Similarity=0.275  Sum_probs=159.1

Q ss_pred             ccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCC
Q 013228            3 AGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHG   82 (447)
Q Consensus         3 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~   82 (447)
                      +.+.+.++.++..|++.+..+-..            ..++.+..++.+.+ +.+|..|+.+|+.+-.  +         .
T Consensus        50 ~~l~~~~~~vr~~aa~~l~~~~~~------------~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~--~---------~  105 (335)
T COG1413          50 KLLEDEDLLVRLSAAVALGELGSE------------EAVPLLRELLSDED-PRVRDAAADALGELGD--P---------E  105 (335)
T ss_pred             HHHcCCCHHHHHHHHHHHhhhchH------------HHHHHHHHHhcCCC-HHHHHHHHHHHHccCC--h---------h
Confidence            456667778888888876655443            27899999999999 8999999998888764  2         3


Q ss_pred             ChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccc-----------hhHHHHHHHHHH
Q 013228           83 AVPIFVKLLA-SPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAK-----------LSMLRIATWTLS  150 (447)
Q Consensus        83 ~i~~L~~ll~-~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~-----------~~~~~~a~~~L~  150 (447)
                      .++.++.++. +.+..+|..+.++|+.+-..           ..+.+++..+.....           ..++..+...+.
T Consensus       106 a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~  174 (335)
T COG1413         106 AVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALG  174 (335)
T ss_pred             HHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHH
Confidence            5788999888 58999999999999998532           126677777733221           123444444444


Q ss_pred             HhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHH
Q 013228          151 NFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQ  230 (447)
Q Consensus       151 ~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~  230 (447)
                      .+-.          ....+.+..++.+.+..++..+..+++.+....         ..+.+.+...+.+++..++..++.
T Consensus       175 ~~~~----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~~  235 (335)
T COG1413         175 ELGD----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAALL  235 (335)
T ss_pred             HcCC----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHHH
Confidence            4332          335667777888888888888888888777543         234567777788888888888888


Q ss_pred             HHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHH
Q 013228          231 TVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIK  310 (447)
Q Consensus       231 ~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~  310 (447)
                      .++.+-..           .....+...+... +..++..+...+...  ...         .....+...+......++
T Consensus       236 ~l~~~~~~-----------~~~~~l~~~l~~~-~~~~~~~~~~~~~~~--~~~---------~~~~~l~~~~~~~~~~~~  292 (335)
T COG1413         236 ALGEIGDE-----------EAVDALAKALEDE-DVILALLAAAALGAL--DLA---------EAALPLLLLLIDEANAVR  292 (335)
T ss_pred             HhcccCcc-----------hhHHHHHHHHhcc-chHHHHHHHHHhccc--Cch---------hhHHHHHHHhhcchhhHH
Confidence            77754421           2344566666666 555555554444311  110         123334444455566666


Q ss_pred             HHHHHHHHHhcCC
Q 013228          311 NWAARAISNATFG  323 (447)
Q Consensus       311 ~~a~~aL~~l~~~  323 (447)
                      ..+..++..+...
T Consensus       293 ~~~~~~l~~~~~~  305 (335)
T COG1413         293 LEAALALGQIGQE  305 (335)
T ss_pred             HHHHHHHHhhccc
Confidence            7777666666553

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.40  E-value=4.1e-06  Score=62.02  Aligned_cols=115  Identities=13%  Similarity=0.107  Sum_probs=100.1

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHH
Q 013228           39 GVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRD  118 (447)
Q Consensus        39 ~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~  118 (447)
                      +.+..|+.-.+...+.+.+++...-|.|.+. +|-+...+.+.++++.++.-+..++..+.+.++..|+|+|.+.. ..+
T Consensus        16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~-n~~   93 (173)
T KOG4646|consen   16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKT-NAK   93 (173)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChH-HHH
Confidence            4566677666655558999999999999999 78999999999999999999999999999999999999998866 577


Q ss_pred             HHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCC
Q 013228          119 LVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK  156 (447)
Q Consensus       119 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  156 (447)
                      .+.+.++++.++..+ +++...+...++.++..++...
T Consensus        94 ~I~ea~g~plii~~l-ssp~e~tv~sa~~~l~~l~~~~  130 (173)
T KOG4646|consen   94 FIREALGLPLIIFVL-SSPPEITVHSAALFLQLLEFGE  130 (173)
T ss_pred             HHHHhcCCceEEeec-CCChHHHHHHHHHHHHHhcCcc
Confidence            888999999999998 7777888888999999998765

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.39  E-value=1.5e-05  Score=74.67  Aligned_cols=252  Identities=15%  Similarity=0.114  Sum_probs=162.9

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCC------CCC
Q 013228           86 IFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK------PKP  159 (447)
Q Consensus        86 ~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~------~~~  159 (447)
                      -+..+..+.++.+|.+|+.+|..|..... ....     .....+.++ .+.+..++..|...++-.....      ...
T Consensus       202 ~l~~~~~~~D~~Vrt~A~eglL~L~eg~k-L~~~-----~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~  274 (823)
T KOG2259|consen  202 GLIYLEHDQDFRVRTHAVEGLLALSEGFK-LSKA-----CYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERESE  274 (823)
T ss_pred             HHHHHhcCCCcchHHHHHHHHHhhccccc-ccHH-----HHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccchhh
Confidence            36677777888888888888888875332 2122     245667777 6777888888755554444322      122


Q ss_pred             ChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcC-
Q 013228          160 IFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG-  238 (447)
Q Consensus       160 ~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~-  238 (447)
                      .......++..+.+.+++....|+..|..+|+.+-.-+++.....++..++..+-..-..   .-+...+..=+..+.+ 
T Consensus       275 e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~a---hkrpk~l~s~GewSsGk  351 (823)
T KOG2259|consen  275 EEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTA---HKRPKALYSSGEWSSGK  351 (823)
T ss_pred             hhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhc---ccchHHHHhcCCcccCc
Confidence            222346778888999999999999999999998876666555555544444422211100   0011111111111111 


Q ss_pred             ----------ChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchh
Q 013228          239 ----------DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFD  308 (447)
Q Consensus       239 ----------~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~  308 (447)
                                .+.....++.+|.-..++.-+.+. -.+||..|+..++.|+..+|.....     .+..|+++++++...
T Consensus       352 ~~~advpsee~d~~~~siI~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~  425 (823)
T KOG2259|consen  352 EWNADVPSEEDDEEEESIIPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEV  425 (823)
T ss_pred             cccccCchhhccccccccccccccceeeeechHH-HHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHH
Confidence                      123345578889999999999888 8999999999999999876654332     567799999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHH
Q 013228          309 IKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGL  360 (447)
Q Consensus       309 v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l  360 (447)
                      ||..|+.+|..++....       ++...++.+...|.+..+++++..-..|
T Consensus       426 VRL~ai~aL~~Is~~l~-------i~eeql~~il~~L~D~s~dvRe~l~elL  470 (823)
T KOG2259|consen  426 VRLKAIFALTMISVHLA-------IREEQLRQILESLEDRSVDVREALRELL  470 (823)
T ss_pred             HHHHHHHHHHHHHHHhe-------ecHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            99999999998876421       2223466666667777766666544333

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.34  E-value=8.5e-05  Score=67.94  Aligned_cols=339  Identities=13%  Similarity=0.100  Sum_probs=205.0

Q ss_pred             HHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC--CC
Q 013228           18 THIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLAS--PS   95 (447)
Q Consensus        18 ~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~   95 (447)
                      ..|..+.... +.....+.-....+.+..++-+++ .+++..+.+++..+.. +++....+.+.++--.++.-|..  .+
T Consensus         5 N~Lv~l~~~~-p~l~~~~~~~~~~~~i~~~lL~~~-~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~   81 (371)
T PF14664_consen    5 NDLVDLLKRH-PTLKYDLVLSFFGERIQCMLLSDS-KEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKN   81 (371)
T ss_pred             HHHHHHHHhC-chhhhhhhHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCC
Confidence            3455555542 322333333335566665666666 7999999999999998 67888888888877777776665  35


Q ss_pred             HHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhh
Q 013228           96 DDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLV  175 (447)
Q Consensus        96 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll  175 (447)
                      ..=|++|++.+..+..-....+.  ...+++..++... .+.+...+..|+.++..++...  +......|+++.+.+.+
T Consensus        82 ~~ER~QALkliR~~l~~~~~~~~--~~~~vvralvaia-e~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l  156 (371)
T PF14664_consen   82 DVEREQALKLIRAFLEIKKGPKE--IPRGVVRALVAIA-EHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRAL  156 (371)
T ss_pred             hHHHHHHHHHHHHHHHhcCCccc--CCHHHHHHHHHHH-hCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHH
Confidence            66788999999988754222111  2456788888888 5677789999999999999763  44455688999999988


Q ss_pred             ccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC-------Cc--hhHhHHHHHHHHhhcCChhhHHHH
Q 013228          176 HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHP-------SP--SVLTRALQTVVNIAAGDDFQTQCI  246 (447)
Q Consensus       176 ~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~-------~~--~v~~~a~~~l~~l~~~~~~~~~~~  246 (447)
                      -++..++....+.++..+...+..+ +.+...--++.++.-..+.       +.  .....+..++..+.+.=+......
T Consensus       157 ~d~~~~~~~~l~~~lL~lLd~p~tR-~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~  235 (371)
T PF14664_consen  157 IDGSFSISESLLDTLLYLLDSPRTR-KYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLS  235 (371)
T ss_pred             HhccHhHHHHHHHHHHHHhCCcchh-hhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeee
Confidence            8776668888999999999776554 3333222234443333221       12  233445555555544332221111


Q ss_pred             Hh-cCChHHHHHhhccCCchhHHHHHHHHHHHHhcC-CHHHHHH------HHHcCChHHHHHHH---hcCchhHHHHHHH
Q 013228          247 IN-CGALPYLLGLLIHNHKKSIKTDACWTISNITAG-NSEHIQA------VIDAGLIGPLVNLL---QNAEFDIKNWAAR  315 (447)
Q Consensus       247 ~~-~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~------l~~~~~~~~L~~~l---~~~~~~v~~~a~~  315 (447)
                      .+ ..++..++..|..+ ..++|....-.+..+..- .+.-...      ....|-+..-.++-   ...........- 
T Consensus       236 ~~~~~~lksLv~~L~~p-~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~-  313 (371)
T PF14664_consen  236 MNDFRGLKSLVDSLRLP-NPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSS-  313 (371)
T ss_pred             cCCchHHHHHHHHHcCC-CHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCcccc-
Confidence            12 25678899999998 888999988888887752 2211111      11111110000110   000000000000 


Q ss_pred             HHHHhcCCCCHHHHHHHHHcCChHHHHhhccCC-CHHHHHHHHHHHHHHHHhh
Q 013228          316 AISNATFGGTHEQIKYLVREGCIKPLCDLLLCA-DPEIVTVFLKGLEKILKVG  367 (447)
Q Consensus       316 aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~~~~~a~~~l~~l~~~~  367 (447)
                      -=.++..+.-.-....+.+.|.++.|+++..+. ++.+...|.-.|..++...
T Consensus       314 ~~~~l~~~y~aLll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL~la  366 (371)
T PF14664_consen  314 KRPNLVNHYLALLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELLHLA  366 (371)
T ss_pred             ccccHHHHHHHHHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence            000111100111234567899999999999887 7888888888888887643

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.33  E-value=1.3e-06  Score=52.02  Aligned_cols=41  Identities=39%  Similarity=0.767  Sum_probs=38.2

Q ss_pred             ChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 013228           71 TSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAA  111 (447)
Q Consensus        71 ~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~  111 (447)
                      +++++..+++.|+++.|+.+|.++++++++.|+|+|+||+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            46788999999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.32  E-value=0.0002  Score=65.77  Aligned_cols=249  Identities=23%  Similarity=0.292  Sum_probs=174.3

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHH
Q 013228           39 GVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRD  118 (447)
Q Consensus        39 ~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~  118 (447)
                      ..++.+.+++.+++ ..++..+++.++.+..           ...++.+..++.+.++.+|..++.+|+.+-..      
T Consensus        43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~------  104 (335)
T COG1413          43 EAADELLKLLEDED-LLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELGDP------  104 (335)
T ss_pred             hhHHHHHHHHcCCC-HHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCh------
Confidence            47889999999997 8999999999777654           14689999999999999999999988887321      


Q ss_pred             HHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCCh------------hHHHHH
Q 013228          119 LVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDK------------EVMTDA  186 (447)
Q Consensus       119 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~------------~v~~~a  186 (447)
                           ..++.++..+..+.+..++..+.++|..+-...          .+..++..+.+...            .++..+
T Consensus       105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a  169 (335)
T COG1413         105 -----EAVPPLVELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAA  169 (335)
T ss_pred             -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence                 247889999955788999999999999886542          35566777766552            234444


Q ss_pred             HHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchh
Q 013228          187 CRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKS  266 (447)
Q Consensus       187 l~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~  266 (447)
                      ...+..+-           +....+.+...+.+....+|..+...++.+....         ..+.+.+...+.+. +..
T Consensus       170 ~~~l~~~~-----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~  228 (335)
T COG1413         170 AEALGELG-----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLE  228 (335)
T ss_pred             HHHHHHcC-----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHH
Confidence            44444332           1234677888888888899999999998887655         23456788888888 899


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcc
Q 013228          267 IKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLL  346 (447)
Q Consensus       267 v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~  346 (447)
                      +|..++..++.+-..  +         ..+.+...+...+..++..+..++...-.   .         .....+...+.
T Consensus       229 vr~~~~~~l~~~~~~--~---------~~~~l~~~l~~~~~~~~~~~~~~~~~~~~---~---------~~~~~l~~~~~  285 (335)
T COG1413         229 VRKAALLALGEIGDE--E---------AVDALAKALEDEDVILALLAAAALGALDL---A---------EAALPLLLLLI  285 (335)
T ss_pred             HHHHHHHHhcccCcc--h---------hHHHHHHHHhccchHHHHHHHHHhcccCc---h---------hhHHHHHHHhh
Confidence            999998888887332  2         45566777777777777666665551111   0         12334445555


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q 013228          347 CADPEIVTVFLKGLEKIL  364 (447)
Q Consensus       347 ~~~~~~~~~a~~~l~~l~  364 (447)
                      +....++..+...+..+.
T Consensus       286 ~~~~~~~~~~~~~l~~~~  303 (335)
T COG1413         286 DEANAVRLEAALALGQIG  303 (335)
T ss_pred             cchhhHHHHHHHHHHhhc
Confidence            555666666555555544

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=0.0018  Score=56.11  Aligned_cols=319  Identities=14%  Similarity=0.145  Sum_probs=198.3

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChh--h--HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh
Q 013228           39 GVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSE--D--TKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSA  114 (447)
Q Consensus        39 ~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~--~--~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~  114 (447)
                      +..|.|-.-|..++ ..++..++..++.+..+.+.  .  ...+++.|+++.++..+...+.++...+...+..++....
T Consensus        82 nlmpdLQrGLiadd-asVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpa  160 (524)
T KOG4413|consen   82 NLMPDLQRGLIADD-ASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPA  160 (524)
T ss_pred             hhhHHHHhcccCCc-chhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHH
Confidence            35566666667777 79999999999988875442  2  2345688999999999999999999999999999997765


Q ss_pred             hHHHHHHhcCCHHHH--HHHhccccchhHHHHHHHHHHHhcCCCCCCChh-hHhhhHHHHHHhhcc-CChhHHHHHHHHH
Q 013228          115 RCRDLVLSEEALIPL--LTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFD-QVRPALPALAQLVHS-NDKEVMTDACRAL  190 (447)
Q Consensus       115 ~~~~~~~~~~~l~~l--~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~l~~l~~ll~~-~~~~v~~~al~~l  190 (447)
                      .. +.+.+.+....+  .++-.+. +.-++......+..+.+-++..... ..+|.+..|..=++. .|.-++..++...
T Consensus       161 al-eaiFeSellDdlhlrnlaakc-ndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElv  238 (524)
T KOG4413|consen  161 AL-EAIFESELLDDLHLRNLAAKC-NDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELV  238 (524)
T ss_pred             HH-HHhcccccCChHHHhHHHhhh-hhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHH
Confidence            43 344444443332  2222122 2234455666666666555333322 236777776666654 6788888899988


Q ss_pred             HHhccCCcHHHHHHHHhCcHHHHHHhcCC--CCchhHhHHHHHHHHhhcC------Chh-hHHHHHhcCChHHHHHhhcc
Q 013228          191 FYLSEGTNDEIQAVIEAGVCPRLVELLGH--PSPSVLTRALQTVVNIAAG------DDF-QTQCIINCGALPYLLGLLIH  261 (447)
Q Consensus       191 ~~l~~~~~~~~~~~~~~~~~~~L~~lL~~--~~~~v~~~a~~~l~~l~~~------~~~-~~~~~~~~~~l~~l~~~l~~  261 (447)
                      ..++..... .+.+.+.|+++.+..++..  .++.-+..++...+.+...      .++ .++.++  -+++...+++..
T Consensus       239 teLaeteHg-reflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaiceali--iaidgsfEmiEm  315 (524)
T KOG4413|consen  239 TELAETEHG-REFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALI--IAIDGSFEMIEM  315 (524)
T ss_pred             HHHHHHhhh-hhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHH--HHHHhhHHhhhc
Confidence            888854333 3567788999999999854  3344444455444444321      111 111111  234555667777


Q ss_pred             CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCC--hHHHH-HHHhcCchhHHHHHHHHHHHhcCCC--CHH---------
Q 013228          262 NHKKSIKTDACWTISNITAGNSEHIQAVIDAGL--IGPLV-NLLQNAEFDIKNWAARAISNATFGG--THE---------  327 (447)
Q Consensus       262 ~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~--~~~L~-~~l~~~~~~v~~~a~~aL~~l~~~~--~~~---------  327 (447)
                      . ++.....|.-+++-+.+.. +..+.+...|-  ...++ +........-+..+..+|.+++..-  .++         
T Consensus       316 n-DpdaieaAiDalGilGSnt-eGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaee  393 (524)
T KOG4413|consen  316 N-DPDAIEAAIDALGILGSNT-EGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEE  393 (524)
T ss_pred             C-CchHHHHHHHHHHhccCCc-chhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHH
Confidence            7 8999999999999997754 44555655543  23332 2333233334456677777776421  111         


Q ss_pred             HHHHHH-----H---cCChHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 013228          328 QIKYLV-----R---EGCIKPLCDLLLCADPEIVTVFLKGLEKILK  365 (447)
Q Consensus       328 ~~~~l~-----~---~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~  365 (447)
                      ....++     +   ...++.+...+..+-+++..++++.+..+..
T Consensus       394 rlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaa  439 (524)
T KOG4413|consen  394 RLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAA  439 (524)
T ss_pred             HHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHc
Confidence            111111     1   1345666777788889999999988888764

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=98.30  E-value=0.00034  Score=66.15  Aligned_cols=255  Identities=15%  Similarity=0.110  Sum_probs=170.3

Q ss_pred             CCchhhhhccCCHHHHHHhh---------cCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCC-----
Q 013228           29 SAPTEEVIPFGVVPRFVEFL---------MREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASP-----   94 (447)
Q Consensus        29 ~~~~~~~~~~~~v~~L~~ll---------~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-----   94 (447)
                      +.....+.....+..|.++-         ....++.+..+|++||+|+...++..|..+.+.|..+.++..|+..     
T Consensus        12 ~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~   91 (446)
T PF10165_consen   12 PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQ   91 (446)
T ss_pred             cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCC
Confidence            44556666666677777665         2233489999999999999999999999999999999999999875     


Q ss_pred             CHHHHHHHHHHHHHhhcCChhHHHHHHh-cCCHHHHHHHhcc---------c-------cchhHHHHHHHHHHHhcCCCC
Q 013228           95 SDDIREQAVCALGNVAADSARCRDLVLS-EEALIPLLTQLNK---------H-------AKLSMLRIATWTLSNFCAGKP  157 (447)
Q Consensus        95 ~~~i~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~l~~~l~~---------~-------~~~~~~~~a~~~L~~l~~~~~  157 (447)
                      +.++.-...+.|.-++...+..+..+.+ .+++..++..+..         .       .+......++..+.|++...+
T Consensus        92 ~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~  171 (446)
T PF10165_consen   92 PSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYP  171 (446)
T ss_pred             ChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccC
Confidence            7888889999998888777767655554 4677777766631         0       134456668889999987774


Q ss_pred             CCChhhH----hhhHHHHHHhh---c--cCChhHHHHHHHHHHHhccCCcHH-------HH----HHHHhCcHHHHHHhc
Q 013228          158 KPIFDQV----RPALPALAQLV---H--SNDKEVMTDACRALFYLSEGTNDE-------IQ----AVIEAGVCPRLVELL  217 (447)
Q Consensus       158 ~~~~~~~----~~~l~~l~~ll---~--~~~~~v~~~al~~l~~l~~~~~~~-------~~----~~~~~~~~~~L~~lL  217 (447)
                      .......    ..+++.+..++   .  .+......+++.+|.|+--.....       ..    .......+..|+.+|
T Consensus       172 ~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~L  251 (446)
T PF10165_consen  172 KSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFL  251 (446)
T ss_pred             cccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHH
Confidence            4433222    44444444442   1  123566777888888773211111       00    001123455666665


Q ss_pred             CC-----C---CchhHhHHHHHHHHhhcCChhhHHHHHh----------------cCChHHHHHhhccCCchhHHHHHHH
Q 013228          218 GH-----P---SPSVLTRALQTVVNIAAGDDFQTQCIIN----------------CGALPYLLGLLIHNHKKSIKTDACW  273 (447)
Q Consensus       218 ~~-----~---~~~v~~~a~~~l~~l~~~~~~~~~~~~~----------------~~~l~~l~~~l~~~~~~~v~~~a~~  273 (447)
                      ..     .   -.......+.+|.+++..+...++.+..                ..+-..|++++.++ .+.+|..++.
T Consensus       252 d~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~-~~~~k~~vae  330 (446)
T PF10165_consen  252 DKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP-DPQLKDAVAE  330 (446)
T ss_pred             HHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC-CchHHHHHHH
Confidence            32     1   1356677788888888876555444432                24567889999998 6999999999


Q ss_pred             HHHHHhcCCHH
Q 013228          274 TISNITAGNSE  284 (447)
Q Consensus       274 ~l~nl~~~~~~  284 (447)
                      .+..+|..+..
T Consensus       331 llf~Lc~~d~~  341 (446)
T PF10165_consen  331 LLFVLCKEDAS  341 (446)
T ss_pred             HHHHHHhhhHH
Confidence            99888765443

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.30  E-value=2.1e-05  Score=78.65  Aligned_cols=258  Identities=16%  Similarity=0.144  Sum_probs=169.6

Q ss_pred             HHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcC---CChhhHHHHHhCCChHH
Q 013228           10 NNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVS---GTSEDTKVVIDHGAVPI   86 (447)
Q Consensus        10 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~i~~   86 (447)
                      .+.++.|+..|..++.....    ...-..++|.++.++.++. .+||..|+.+|..+..   .-+..-..+...-++|-
T Consensus       437 ~~tK~~ALeLl~~lS~~i~d----e~~LDRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~  511 (1431)
T KOG1240|consen  437 IQTKLAALELLQELSTYIDD----EVKLDRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDIPPSDANIFPEYLFPH  511 (1431)
T ss_pred             chhHHHHHHHHHHHhhhcch----HHHHhhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhh
Confidence            56778888888888765322    1222348999999999999 8999999999888754   22222333444456677


Q ss_pred             HHHhhCC-CCHHHHHHHHHHHHHhhcCChhHHHHH---Hh------------------------cCCHHHHHHHhccccc
Q 013228           87 FVKLLAS-PSDDIREQAVCALGNVAADSARCRDLV---LS------------------------EEALIPLLTQLNKHAK  138 (447)
Q Consensus        87 L~~ll~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~---~~------------------------~~~l~~l~~~l~~~~~  138 (447)
                      |-.++.+ ....+|..-+..|+.|+...-.+.+..   ..                        ...+...+.-|..+++
T Consensus       512 L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~  591 (1431)
T KOG1240|consen  512 LNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSP  591 (1431)
T ss_pred             hHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCc
Confidence            7777777 445566555666666652111000000   00                        0012223333325556


Q ss_pred             hhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcC
Q 013228          139 LSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLG  218 (447)
Q Consensus       139 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~  218 (447)
                      +-+++..+..+.-||...  .+.....-+++.|+.+|++.|+.+|..-...|..++..-..+   -++..++|.|.+-|.
T Consensus       592 ~~Vkr~Lle~i~~LC~FF--Gk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r---s~seyllPLl~Q~lt  666 (1431)
T KOG1240|consen  592 PIVKRALLESIIPLCVFF--GKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR---SVSEYLLPLLQQGLT  666 (1431)
T ss_pred             hHHHHHHHHHHHHHHHHh--hhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee---eHHHHHHHHHHHhcc
Confidence            667777777777777543  111122457888999999999998887777776665432221   235577899999999


Q ss_pred             CCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc
Q 013228          219 HPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA  280 (447)
Q Consensus       219 ~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~  280 (447)
                      +.++.|...|+.++..|+...--....+.  .+++....+|.++ +..+|..++..+...+.
T Consensus       667 D~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  667 DGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHP-NLWIRRAVLGIIAAIAR  725 (1431)
T ss_pred             CcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCc-hHHHHHHHHHHHHHHHh
Confidence            99999999999999999875543333333  3677788889999 99999999999887765

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.30  E-value=0.00058  Score=67.84  Aligned_cols=291  Identities=13%  Similarity=0.184  Sum_probs=184.2

Q ss_pred             CCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHH
Q 013228            7 SDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPI   86 (447)
Q Consensus         7 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~   86 (447)
                      ..++.++.-|+..+..+.+.  .+....+...|.+..|+++|.+..  ..|..++.+|..+++ +++....-.+.|++..
T Consensus      1783 ~~~~~iq~LaL~Vi~~~Tan--~~Cv~~~a~~~vL~~LL~lLHS~P--S~R~~vL~vLYAL~S-~~~i~keA~~hg~l~y 1857 (2235)
T KOG1789|consen 1783 RKHPKLQILALQVILLATAN--KECVTDLATCNVLTTLLTLLHSQP--SMRARVLDVLYALSS-NGQIGKEALEHGGLMY 1857 (2235)
T ss_pred             cCCchHHHHHHHHHHHHhcc--cHHHHHHHhhhHHHHHHHHHhcCh--HHHHHHHHHHHHHhc-CcHHHHHHHhcCchhh
Confidence            35677888888888777665  777888999999999999987665  889999999999999 7788888888898888


Q ss_pred             HHHhhC-CCCHHHHHHHHHHHHHhhcCC---hhHHHHHHh----------cCCHHHHHHHhcc-ccchh------HHHHH
Q 013228           87 FVKLLA-SPSDDIREQAVCALGNVAADS---ARCRDLVLS----------EEALIPLLTQLNK-HAKLS------MLRIA  145 (447)
Q Consensus        87 L~~ll~-~~~~~i~~~a~~~L~~l~~~~---~~~~~~~~~----------~~~l~~l~~~l~~-~~~~~------~~~~a  145 (447)
                      +..++- +.++..|.+++..++.+..+.   |..+-.+++          .+.-+..+..+.. +.+++      .+...
T Consensus      1858 il~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kv 1937 (2235)
T KOG1789|consen 1858 ILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKV 1937 (2235)
T ss_pred             hhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHH
Confidence            887664 467899999999999987543   111100000          0112333333321 11111      12222


Q ss_pred             HHHHHHhc----CCC---C--------------------------------------CCChhhHhhhHHHHHHhhccCCh
Q 013228          146 TWTLSNFC----AGK---P--------------------------------------KPIFDQVRPALPALAQLVHSNDK  180 (447)
Q Consensus       146 ~~~L~~l~----~~~---~--------------------------------------~~~~~~~~~~l~~l~~ll~~~~~  180 (447)
                      ...+..+.    +..   +                                      ........+.+..+..++..+++
T Consensus      1938 S~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~p 2017 (2235)
T KOG1789|consen 1938 SGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTP 2017 (2235)
T ss_pred             HHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCc
Confidence            11221111    000   0                                      01111224445555555554332


Q ss_pred             --hHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHh
Q 013228          181 --EVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGL  258 (447)
Q Consensus       181 --~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~  258 (447)
                        ......-.++..+....+...+.+-..|.+|.++..+...+..+-..|++.|..++... ...+.+.....+..++..
T Consensus      2018 eqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~-~C~~AMA~l~~i~~~m~~ 2096 (2235)
T KOG1789|consen 2018 EQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQ-FCCDAMAQLPCIDGIMKS 2096 (2235)
T ss_pred             ccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhcc-HHHHHHhccccchhhHHH
Confidence              12222223334444444544555556699999999998877777789999999998744 455666666677778887


Q ss_pred             hccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcC
Q 013228          259 LIHNHKKSIKTDACWTISNITA-GNSEHIQAVIDAGLIGPLVNLLQNA  305 (447)
Q Consensus       259 l~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~~l~~~  305 (447)
                      ++..  .....-|+.+|..+.. ...+.....++.|.+|.|+.+|...
T Consensus      2097 mkK~--~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2097 MKKQ--PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred             HHhc--chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence            7654  3334477788877765 3445566677899999999999853

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.28  E-value=0.00012  Score=62.87  Aligned_cols=234  Identities=15%  Similarity=0.111  Sum_probs=150.4

Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHH-hcCCHHHHHHHhcccc-chhHHHHHHHHHHHhcCCCCCC-Chhh
Q 013228           87 FVKLLASPSDDIREQAVCALGNVAADSARCRDLVL-SEEALIPLLTQLNKHA-KLSMLRIATWTLSNFCAGKPKP-IFDQ  163 (447)
Q Consensus        87 L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~l~~~l~~~~-~~~~~~~a~~~L~~l~~~~~~~-~~~~  163 (447)
                      |-.+++.-++-.+..|+.++.++..... .|.... +...-..++..+.++- +.+++.+.+.+++.++...... ....
T Consensus       154 Lgkl~Q~i~~lTrlfav~cl~~l~~~~e-~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K  232 (432)
T COG5231         154 LGKLSQLIDFLTRLFAVSCLSNLEFDVE-KRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDK  232 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhHH-HHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHH
Confidence            3344445566688889999999987655 455443 4445667777775544 4788999999999999875222 1122


Q ss_pred             HhhhHHHHHHhhccC-ChhHHHHHHHHHHHhccCC-cHHHHHHHHhCcHHHHHHhcCC---CCchhHhHHHHHHHHhhcC
Q 013228          164 VRPALPALAQLVHSN-DKEVMTDACRALFYLSEGT-NDEIQAVIEAGVCPRLVELLGH---PSPSVLTRALQTVVNIAAG  238 (447)
Q Consensus       164 ~~~~l~~l~~ll~~~-~~~v~~~al~~l~~l~~~~-~~~~~~~~~~~~~~~L~~lL~~---~~~~v~~~a~~~l~~l~~~  238 (447)
                      ....+..++.+.+.. .++|..-++..+.|++... ...+..+.-.|-+..-++.|..   .+++++...-++=+.+...
T Consensus       233 ~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~  312 (432)
T COG5231         233 MDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQN  312 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh
Confidence            245556666666644 5778888999999999733 2333334334434444454422   3444433322222222111


Q ss_pred             ---------------------Ch---------hhHHHHHh--cCChHHHHHhhccCCchh-HHHHHHHHHHHHhcCCHHH
Q 013228          239 ---------------------DD---------FQTQCIIN--CGALPYLLGLLIHNHKKS-IKTDACWTISNITAGNSEH  285 (447)
Q Consensus       239 ---------------------~~---------~~~~~~~~--~~~l~~l~~~l~~~~~~~-v~~~a~~~l~nl~~~~~~~  285 (447)
                                           +|         ...+.+.+  ..++..|.+++++. .+. ...-||.-+..+.+..|+.
T Consensus       313 ~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n-~~nt~i~vAc~Di~~~Vr~~PE~  391 (432)
T COG5231         313 TKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSN-NPNTWICVACSDIFQLVRASPEI  391 (432)
T ss_pred             hhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcC-CCCceEeeeHhhHHHHHHhCchH
Confidence                                 00         11222222  24577888888877 443 4556777888888888999


Q ss_pred             HHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcC
Q 013228          286 IQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATF  322 (447)
Q Consensus       286 ~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~  322 (447)
                      ...+.+.|+-..++++++++|++++.+|..++..+..
T Consensus       392 ~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         392 NAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS  428 (432)
T ss_pred             HHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence            9999999999999999999999999999999876643

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.28  E-value=8.6e-05  Score=74.41  Aligned_cols=296  Identities=15%  Similarity=0.106  Sum_probs=188.7

Q ss_pred             hHHHHHhhCC-CCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCC----CC
Q 013228           84 VPIFVKLLAS-PSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK----PK  158 (447)
Q Consensus        84 i~~L~~ll~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~----~~  158 (447)
                      +..+...+++ .....+..|+..|..++.....   ...-..++|.++.++ .++...++..|+.+|..+...-    +.
T Consensus       424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d---e~~LDRVlPY~v~l~-~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~  499 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDD---EVKLDRVLPYFVHLL-MDSEADVRATALETLTELLALVRDIPPS  499 (1431)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch---HHHHhhhHHHHHHHh-cCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence            3555555555 4677888899999888854321   111224688888888 7888899999888887765332    34


Q ss_pred             CChhhHhhhHHHHHHhhcc-CChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhc
Q 013228          159 PIFDQVRPALPALAQLVHS-NDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAA  237 (447)
Q Consensus       159 ~~~~~~~~~l~~l~~ll~~-~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~  237 (447)
                      .......-++|.|-.++.+ ....++..-+.+|..++..    .-.+.+.+.-......+++++.+..         --.
T Consensus       500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~t----A~rFle~~q~~~~~g~~n~~nset~---------~~~  566 (1431)
T KOG1240|consen  500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKT----AYRFLELTQELRQAGMLNDPNSETA---------PEQ  566 (1431)
T ss_pred             cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHH----HHHHHHHHHHHHhcccccCcccccc---------ccc
Confidence            4444557889999999988 5566776667777777632    1223332222222333444433200         000


Q ss_pred             CChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHH
Q 013228          238 GDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAI  317 (447)
Q Consensus       238 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL  317 (447)
                      ..+.....+.+ .+-.....++.++ ++-||+..+..|.-||.....   .--+.-+++.|+..|+..|+.+|..-...|
T Consensus       567 ~~~~~~~~L~~-~V~~~v~sLlsd~-~~~Vkr~Lle~i~~LC~FFGk---~ksND~iLshLiTfLNDkDw~LR~aFfdsI  641 (1431)
T KOG1240|consen  567 NYNTELQALHH-TVEQMVSSLLSDS-PPIVKRALLESIIPLCVFFGK---EKSNDVILSHLITFLNDKDWRLRGAFFDSI  641 (1431)
T ss_pred             ccchHHHHHHH-HHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHhhh---cccccchHHHHHHHhcCccHHHHHHHHhhc
Confidence            11122232332 3445667777777 788998888888887752101   011234789999999999999998877777


Q ss_pred             HHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHH
Q 013228          318 SNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIE  397 (447)
Q Consensus       318 ~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~  397 (447)
                      .-++..-....    ++.+.++.|.+-|.++++-+...|++++..|++.+--.+.               .-...++.+.
T Consensus       642 ~gvsi~VG~rs----~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~---------------~v~~i~~~v~  702 (1431)
T KOG1240|consen  642 VGVSIFVGWRS----VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKP---------------AVKDILQDVL  702 (1431)
T ss_pred             cceEEEEeeee----HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchH---------------HHHHHHHhhh
Confidence            65554322111    2345688899999999999999999999999987654331               1122345566


Q ss_pred             HHhcCCCHHHHHHHHHHHHHhcC
Q 013228          398 NLRSHDNDEIHEKSVKILETYWC  420 (447)
Q Consensus       398 ~l~~~~~~~v~~~a~~~l~~~~~  420 (447)
                      -++-|+|.=|++.+..+|.....
T Consensus       703 PlL~hPN~WIR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  703 PLLCHPNLWIRRAVLGIIAAIAR  725 (1431)
T ss_pred             hheeCchHHHHHHHHHHHHHHHh
Confidence            67889999999999888876543

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=98.27  E-value=0.0014  Score=61.06  Aligned_cols=350  Identities=12%  Similarity=0.129  Sum_probs=187.7

Q ss_pred             CCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCC---CHHHHHHHHHHHHHHcCCChhhHHHHHhCCCh
Q 013228            8 DDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMRED---YPQLQFEAAWALKNIVSGTSEDTKVVIDHGAV   84 (447)
Q Consensus         8 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i   84 (447)
                      +++-.|.+|+..|..+-.+.      .+    +.-.+++.+..+.   +.-.....+++...+...+++.+.++.     
T Consensus       202 ~~~isqYHalGlLyq~kr~d------km----a~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~r-----  266 (898)
T COG5240         202 GNPISQYHALGLLYQSKRTD------KM----AQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLR-----  266 (898)
T ss_pred             CChHHHHHHHHHHHHHhccc------HH----HHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHH-----
Confidence            34556666666665554331      11    2334444444333   122223334555556655665555443     


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhH
Q 013228           85 PIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQV  164 (447)
Q Consensus        85 ~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  164 (447)
                      |.|-..+.+.-+.+.-.+++++..++...-.  ..+.+ ..+..|-.+| +++....+-.|..+|..++...|...    
T Consensus       267 pfL~~wls~k~emV~lE~Ar~v~~~~~~nv~--~~~~~-~~vs~L~~fL-~s~rv~~rFsA~Riln~lam~~P~kv----  338 (898)
T COG5240         267 PFLNSWLSDKFEMVFLEAARAVCALSEENVG--SQFVD-QTVSSLRTFL-KSTRVVLRFSAMRILNQLAMKYPQKV----  338 (898)
T ss_pred             HHHHHHhcCcchhhhHHHHHHHHHHHHhccC--HHHHH-HHHHHHHHHH-hcchHHHHHHHHHHHHHHHhhCCcee----
Confidence            5555666666677888888888887744311  11111 1244444455 66777788889999999987664432    


Q ss_pred             hhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHH
Q 013228          165 RPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQ  244 (447)
Q Consensus       165 ~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~  244 (447)
                      .-+-+.+-.++.+.+..+...|+..|..-.  .++.+..+     +..+..++.+-++..+.-+..++..|+-.-+....
T Consensus       339 ~vcN~evEsLIsd~Nr~IstyAITtLLKTG--t~e~idrL-----v~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~  411 (898)
T COG5240         339 SVCNKEVESLISDENRTISTYAITTLLKTG--TEETIDRL-----VNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKL  411 (898)
T ss_pred             eecChhHHHHhhcccccchHHHHHHHHHcC--chhhHHHH-----HHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHH
Confidence            223344556677777777777776664432  33333333     34444455554455555555555555544443333


Q ss_pred             HHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCC
Q 013228          245 CIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGG  324 (447)
Q Consensus       245 ~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~  324 (447)
                      .     .+..|...|......+.++.++-+++.+....|+..+.     ++..|+..+.+.  +.-+-+.+.|+-+...+
T Consensus       412 s-----~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC~fIEDc--ey~~I~vrIL~iLG~Eg  479 (898)
T COG5240         412 S-----YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLCTFIEDC--EYHQITVRILGILGREG  479 (898)
T ss_pred             H-----HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHHHHHhhc--chhHHHHHHHHHhcccC
Confidence            2     34456665554436777888888888777766554433     344566666532  22234445555444432


Q ss_pred             CHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCC
Q 013228          325 THEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDN  404 (447)
Q Consensus       325 ~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~  404 (447)
                      ......    ...+..+.+=+--++.-++.+|+.+|.++.-..+.-                +........|...+++.+
T Consensus       480 P~a~~P----~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~----------------~~~~sv~~~lkRclnD~D  539 (898)
T COG5240         480 PRAKTP----GKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV----------------VSPQSVENALKRCLNDQD  539 (898)
T ss_pred             CCCCCc----chHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc----------------ccHHHHHHHHHHHhhccc
Confidence            110000    012333333333345567777777777765432221                111112244556677788


Q ss_pred             HHHHHHHHHHHHHhc
Q 013228          405 DEIHEKSVKILETYW  419 (447)
Q Consensus       405 ~~v~~~a~~~l~~~~  419 (447)
                      ++|+++|.-.++.+-
T Consensus       540 deVRdrAsf~l~~~~  554 (898)
T COG5240         540 DEVRDRASFLLRNMR  554 (898)
T ss_pred             HHHHHHHHHHHHhhh
Confidence            888888877777653

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.25  E-value=0.0022  Score=61.18  Aligned_cols=337  Identities=15%  Similarity=0.133  Sum_probs=192.6

Q ss_pred             HHHHHhhcCCCCH--HHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 013228           42 PRFVEFLMREDYP--QLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDL  119 (447)
Q Consensus        42 ~~L~~ll~~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~  119 (447)
                      ..-+++|+++..+  .+-...+.+|   ...+.+..+.+     +..+..=|.+.++....-|+.+++|+.+..  +++.
T Consensus        77 mEaV~LLss~kysEKqIGYl~is~L---~n~n~dl~klv-----in~iknDL~srn~~fv~LAL~~I~niG~re--~~ea  146 (938)
T KOG1077|consen   77 MEAVNLLSSNKYSEKQIGYLFISLL---LNENSDLMKLV-----INSIKNDLSSRNPTFVCLALHCIANIGSRE--MAEA  146 (938)
T ss_pred             HHHHHHhhcCCccHHHHhHHHHHHH---HhcchHHHHHH-----HHHHHhhhhcCCcHHHHHHHHHHHhhccHh--HHHH
Confidence            3445667666421  2223333333   33333333322     344566666788999999999999986432  3333


Q ss_pred             HHhcCCHHHHHHHhccccc-hhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCc
Q 013228          120 VLSEEALIPLLTQLNKHAK-LSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTN  198 (447)
Q Consensus       120 ~~~~~~l~~l~~~l~~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~  198 (447)
                      +.     ..+-.+|.+.++ .-++..++.++..|.+..|+.  ....+-...++++|.+.+-.+...+...+-.++...+
T Consensus       147 ~~-----~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl--~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p  219 (938)
T KOG1077|consen  147 FA-----DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDL--VNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNP  219 (938)
T ss_pred             hh-----hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccc--cChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCC
Confidence            32     223355544443 456777888998888875433  2335667889999999998888888888888886655


Q ss_pred             HHHHHHHHhCcHHHHHHhcCC-------------CCchhHhHHHHHHHHhhcCCh-hhHHHHHhcCChHHHHHhhccC-C
Q 013228          199 DEIQAVIEAGVCPRLVELLGH-------------PSPSVLTRALQTVVNIAAGDD-FQTQCIINCGALPYLLGLLIHN-H  263 (447)
Q Consensus       199 ~~~~~~~~~~~~~~L~~lL~~-------------~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~l~~~l~~~-~  263 (447)
                      +.....+. -.+..|..+...             +.+=.+...++.|.++-...+ ..+..+.+  +++.++...+.+ .
T Consensus       220 ~~yk~~~~-~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~  296 (938)
T KOG1077|consen  220 ESYKTCLP-LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPK  296 (938)
T ss_pred             HHHhhhHH-HHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCcc
Confidence            43321111 112222222211             344566777888877743222 22222222  333444333311 1


Q ss_pred             chh-----HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCh
Q 013228          264 KKS-----IKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCI  338 (447)
Q Consensus       264 ~~~-----v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l  338 (447)
                      ...     .+....+-.-+++.+....-+.+.+  .+..|..++.+....+|.-|...++.++....  ....+ ... .
T Consensus       297 ~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~--s~dav-K~h-~  370 (938)
T KOG1077|consen  297 SKKVQHSNAKNAVLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASSEF--SIDAV-KKH-Q  370 (938)
T ss_pred             ccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhccc--hHHHH-HHH-H
Confidence            112     2223333334444421111112222  57778889999999999999999999988532  22222 222 7


Q ss_pred             HHHHhhcc-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 013228          339 KPLCDLLL-CADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILET  417 (447)
Q Consensus       339 ~~L~~ll~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~  417 (447)
                      +.++..|+ ..|..++..+++.|+.+++.+.               ++.|. .+.++.|.....+--+++.-+++-+-++
T Consensus       371 d~Ii~sLkterDvSirrravDLLY~mcD~~N---------------ak~IV-~elLqYL~tAd~sireeivlKvAILaEK  434 (938)
T KOG1077|consen  371 DTIINSLKTERDVSIRRRAVDLLYAMCDVSN---------------AKQIV-AELLQYLETADYSIREEIVLKVAILAEK  434 (938)
T ss_pred             HHHHHHhccccchHHHHHHHHHHHHHhchhh---------------HHHHH-HHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence            78888888 7889999999999999987543               23333 4445666554444456666666656666


Q ss_pred             hcC
Q 013228          418 YWC  420 (447)
Q Consensus       418 ~~~  420 (447)
                      |..
T Consensus       435 yAt  437 (938)
T KOG1077|consen  435 YAT  437 (938)
T ss_pred             hcC
Confidence            544

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.25  E-value=3.8e-05  Score=66.19  Aligned_cols=189  Identities=16%  Similarity=0.132  Sum_probs=118.7

Q ss_pred             cCCCHHHHHHHHHHHHHHHccC-CCCchhhhhc--cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCC
Q 013228            6 WSDDNNMQLEATTHIRKLLSNA-RSAPTEEVIP--FGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHG   82 (447)
Q Consensus         6 ~s~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~--~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~   82 (447)
                      .+.|++.+..|+..|..++.+. .......+.+  ..++..+...+++.. ..+...|+.++..++..-........ ..
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~~~~~~-~~   94 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSHFEPYA-DI   94 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHH-HH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHHH-HH
Confidence            5688999999999999999874 1222333222  145667777777777 78999999999998874333333332 24


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCC-CCh
Q 013228           83 AVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPK-PIF  161 (447)
Q Consensus        83 ~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~  161 (447)
                      +++.|+..+.++...++..|..+|..++...+....      .+..++.....+.++.++..++..+..+....+. ...
T Consensus        95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~------~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~  168 (228)
T PF12348_consen   95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPK------ILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV  168 (228)
T ss_dssp             HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--H------HHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHH------HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence            788999999998999999999999999976551111      1133344343788899999999888888766541 111


Q ss_pred             h----hHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHH
Q 013228          162 D----QVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQ  202 (447)
Q Consensus       162 ~----~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~  202 (447)
                      .    ....+.+.+..++.++++++|..+-.++..+....++...
T Consensus       169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~  213 (228)
T PF12348_consen  169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAE  213 (228)
T ss_dssp             G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred             hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhc
Confidence            1    1256888899999999999999999999888755444433

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=0.0021  Score=64.34  Aligned_cols=231  Identities=12%  Similarity=0.152  Sum_probs=151.7

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCCh
Q 013228           82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIF  161 (447)
Q Consensus        82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~  161 (447)
                      ++++.|+..+++.+..+|-.|+..++.++...|.  ..  ...++..++.++....+...-..++.+|..++... -...
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~--~L--ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG-lLlp  415 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP--EL--ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG-LLLP  415 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH--HH--HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC-Ccch
Confidence            5677788888889999999999999999977662  12  22357778887755556677778999999999876 3333


Q ss_pred             hhHhhhHHHHHHhhcc--------CChhHHHHHHHHHHHhccCCcH-HHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHH
Q 013228          162 DQVRPALPALAQLVHS--------NDKEVMTDACRALFYLSEGTND-EIQAVIEAGVCPRLVELLGHPSPSVLTRALQTV  232 (447)
Q Consensus       162 ~~~~~~l~~l~~ll~~--------~~~~v~~~al~~l~~l~~~~~~-~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l  232 (447)
                      .....++|.+++.+.-        ....||..|+.+++.++..... ..+.+++.=.-..+...+-+++-..|+.|..++
T Consensus       416 s~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl  495 (1133)
T KOG1943|consen  416 SLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAAL  495 (1133)
T ss_pred             HHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence            4457788888877753        2367899998888888854332 223333322223344455677777888877776


Q ss_pred             HHhhcC--C-hhhHH----------------------HHHh-cCChHHHHHh-----hccCCchhHHHHHHHHHHHHhcC
Q 013228          233 VNIAAG--D-DFQTQ----------------------CIIN-CGALPYLLGL-----LIHNHKKSIKTDACWTISNITAG  281 (447)
Q Consensus       233 ~~l~~~--~-~~~~~----------------------~~~~-~~~l~~l~~~-----l~~~~~~~v~~~a~~~l~nl~~~  281 (447)
                      ......  + +....                      .+.+ .|....+++-     +.+- +..+|..++++|.+++..
T Consensus       496 qE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HW-d~~irelaa~aL~~Ls~~  574 (1133)
T KOG1943|consen  496 QENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHW-DVKIRELAAYALHKLSLT  574 (1133)
T ss_pred             HHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccc-cHHHHHHHHHHHHHHHHh
Confidence            654321  0 00000                      0111 1223333332     4556 899999999999998765


Q ss_pred             CHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcC
Q 013228          282 NSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATF  322 (447)
Q Consensus       282 ~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~  322 (447)
                      .++    ......++.++....+.+...|.-+..+.+.++.
T Consensus       575 ~pk----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~  611 (1133)
T KOG1943|consen  575 EPK----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG  611 (1133)
T ss_pred             hHH----hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence            554    2345578889888888888887766666665554

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=98.19  E-value=0.0062  Score=57.52  Aligned_cols=339  Identities=14%  Similarity=0.139  Sum_probs=193.6

Q ss_pred             cccCCCH---HHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-----
Q 013228            4 GVWSDDN---NMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDT-----   75 (447)
Q Consensus         4 ~l~s~~~---~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~-----   75 (447)
                      .|.+.+.   ......+.+|..++..  ..-.+.+.. .++..+....+.+.+.+....++.++..+.....+..     
T Consensus         7 ~Lpd~~~~~~~~~~~~L~~l~~ls~~--~~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~~~   83 (415)
T PF12460_consen    7 LLPDSDSSTDSNYERILEALAALSTS--PQILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFEDN   83 (415)
T ss_pred             hCCCCCCcchhHHHHHHHHHHHHHCC--hhHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccchH
Confidence            3444443   5667777888888765  222232222 4555555555544446777788888888765332222     


Q ss_pred             HHHHhCCChHHHHHhhCC-----C--CHHHHHHHHHHHHHhhcCChhH-HHHHHhcCCHHHHHHHhc----------cc-
Q 013228           76 KVVIDHGAVPIFVKLLAS-----P--SDDIREQAVCALGNVAADSARC-RDLVLSEEALIPLLTQLN----------KH-  136 (447)
Q Consensus        76 ~~~~~~~~i~~L~~ll~~-----~--~~~i~~~a~~~L~~l~~~~~~~-~~~~~~~~~l~~l~~~l~----------~~-  136 (447)
                      ....+..+++.+..+.-.     .  ++.+...+...+..+...-+.- ++.+     +..+.....          .. 
T Consensus        84 ~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~-----~~~~~~lf~~~~~~~~~~~~~~  158 (415)
T PF12460_consen   84 SWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEI-----LDELYSLFLSPKSFSPFQPSSS  158 (415)
T ss_pred             HHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHH-----HHHHHHHHccccccCCCCcccc
Confidence            333444477777776532     1  2566666666666666443322 2222     333333332          01 


Q ss_pred             ----cchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhc-cCChhHHHHHHHHHHHhccC--CcHHHHHHHHhCc
Q 013228          137 ----AKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVH-SNDKEVMTDACRALFYLSEG--TNDEIQAVIEAGV  209 (447)
Q Consensus       137 ----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~-~~~~~v~~~al~~l~~l~~~--~~~~~~~~~~~~~  209 (447)
                          .......-...++..+-.   ..........+..++.+.. ..++..+..++.+++-+...  .++...     .+
T Consensus       159 ~~~~~~~~~~~l~~~il~~l~~---~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~-----~~  230 (415)
T PF12460_consen  159 TISEQQSRLVILFSAILCSLRK---DVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD-----EF  230 (415)
T ss_pred             ccccccccHHHHHHHHHHcCCc---ccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH-----HH
Confidence                011122222333333332   2332234557777777754 44688888888888888744  222122     23


Q ss_pred             HHHHHHhc-CCCCchhHhHHHHHHHHhh-----cCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCH
Q 013228          210 CPRLVELL-GHPSPSVLTRALQTVVNIA-----AGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNS  283 (447)
Q Consensus       210 ~~~L~~lL-~~~~~~v~~~a~~~l~~l~-----~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~  283 (447)
                      +..+...+ .......+..++..+..++     ++++...      ..+..++.++.+   +++...++..+.-+....+
T Consensus       231 l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~------~~~~~L~~lL~~---~~~g~~aA~~f~il~~d~~  301 (415)
T PF12460_consen  231 LDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT------ELLDKLLELLSS---PELGQQAAKAFGILLSDSD  301 (415)
T ss_pred             HHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH------HHHHHHHHHhCC---hhhHHHHHHHHhhHhcCcH
Confidence            33343333 3334444555544443332     3443222      245578888866   4677888888887766522


Q ss_pred             H--------HHHHHHHcC----ChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHH
Q 013228          284 E--------HIQAVIDAG----LIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPE  351 (447)
Q Consensus       284 ~--------~~~~l~~~~----~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~  351 (447)
                      +        +++.+.+..    ++|.|++.....+...+.....||..+..+-.......-. ..+++.|++.|+.++++
T Consensus       302 ~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l-~~LlPLLlqsL~~~~~~  380 (415)
T PF12460_consen  302 DVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPEL-PTLLPLLLQSLSLPDAD  380 (415)
T ss_pred             HhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHH-HHHHHHHHHHhCCCCHH
Confidence            2        333344433    5777777777666668899999999999875443322211 24788999999999999


Q ss_pred             HHHHHHHHHHHHHHhhh
Q 013228          352 IVTVFLKGLEKILKVGE  368 (447)
Q Consensus       352 ~~~~a~~~l~~l~~~~~  368 (447)
                      ++..++.+|..++...+
T Consensus       381 v~~s~L~tL~~~l~~~~  397 (415)
T PF12460_consen  381 VLLSSLETLKMILEEAP  397 (415)
T ss_pred             HHHHHHHHHHHHHHcCH
Confidence            99999999999997653

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.18  E-value=3.4e-06  Score=50.15  Aligned_cols=41  Identities=37%  Similarity=0.520  Sum_probs=37.9

Q ss_pred             CHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcC
Q 013228          282 NSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATF  322 (447)
Q Consensus       282 ~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~  322 (447)
                      ++++++.+++.|++|.|+.++.++++++++.|+|+|+|++.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            36788999999999999999999999999999999999863

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.18  E-value=3.4e-05  Score=66.52  Aligned_cols=187  Identities=16%  Similarity=0.168  Sum_probs=119.3

Q ss_pred             cCCCCchhHhHHHHHHHHhhcCC--hhhHHHHHh--cCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHc
Q 013228          217 LGHPSPSVLTRALQTVVNIAAGD--DFQTQCIIN--CGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDA  292 (447)
Q Consensus       217 L~~~~~~v~~~a~~~l~~l~~~~--~~~~~~~~~--~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~  292 (447)
                      -.+.+|..|..++..|..++.++  ......+.+  ..++..+...+.+. ...+...|+.++..++...........+.
T Consensus        16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~   94 (228)
T PF12348_consen   16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYADI   94 (228)
T ss_dssp             HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence            36688999999999999998766  222222222  15667777888777 78899999999999987433334444443


Q ss_pred             CChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhh
Q 013228          293 GLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKN  372 (447)
Q Consensus       293 ~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~  372 (447)
                       ++|.|+..+.++...++..|..+|..+.....  ....+    ....+.....+.++.++..++..+..++........
T Consensus        95 -~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~  167 (228)
T PF12348_consen   95 -LLPPLLKKLGDSKKFIREAANNALDAIIESCS--YSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSS  167 (228)
T ss_dssp             -HHHHHHHGGG---HHHHHHHHHHHHHHHTTS---H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----G
T ss_pred             -HHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--cHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHh
Confidence             78999999998889999999999999998754  11111    156677788999999999999999999876551110


Q ss_pred             hhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 013228          373 MDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWC  420 (447)
Q Consensus       373 ~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  420 (447)
                      .         +.....-....+.+.....+++++|++.|..++..|+.
T Consensus       168 ~---------l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~  206 (228)
T PF12348_consen  168 V---------LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS  206 (228)
T ss_dssp             G---------G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred             h---------hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence            0         01111113346788889999999999999999988764

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=98.12  E-value=0.0004  Score=64.49  Aligned_cols=285  Identities=14%  Similarity=0.055  Sum_probs=168.2

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 013228           41 VPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV  120 (447)
Q Consensus        41 v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~  120 (447)
                      .|.|-..+++.- +.+..++++.++.++..+  ....+++ ..+..|-.+|.++....|-.|+++|..|+...|..   +
T Consensus       266 rpfL~~wls~k~-emV~lE~Ar~v~~~~~~n--v~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~k---v  338 (898)
T COG5240         266 RPFLNSWLSDKF-EMVFLEAARAVCALSEEN--VGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQK---V  338 (898)
T ss_pred             HHHHHHHhcCcc-hhhhHHHHHHHHHHHHhc--cCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCce---e
Confidence            344444455555 689999999999988643  1222332 24677888888999999999999999999766631   1


Q ss_pred             HhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhcc---CChhHHHHHHHHHHHhccCC
Q 013228          121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHS---NDKEVMTDACRALFYLSEGT  197 (447)
Q Consensus       121 ~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~---~~~~v~~~al~~l~~l~~~~  197 (447)
                      ...  =+.+-.++ ++.+..+-.+|...   |........   +..++..+..++.+   +-.-+...+++.|+...   
T Consensus       339 ~vc--N~evEsLI-sd~Nr~IstyAITt---LLKTGt~e~---idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~F---  406 (898)
T COG5240         339 SVC--NKEVESLI-SDENRTISTYAITT---LLKTGTEET---IDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLF---  406 (898)
T ss_pred             eec--ChhHHHHh-hcccccchHHHHHH---HHHcCchhh---HHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhC---
Confidence            111  11222222 45454444444443   333322222   23334444444443   33444555555555544   


Q ss_pred             cHHHHHHHHhCcHHHHHHhc-CCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHH
Q 013228          198 NDEIQAVIEAGVCPRLVELL-GHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTIS  276 (447)
Q Consensus       198 ~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~  276 (447)
                      +....     ..+..|...| +.+..+.+..+..++..+....|+..+.     +++.|..++.+.   +.-+-++.+|+
T Consensus       407 p~k~~-----s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC~fIEDc---ey~~I~vrIL~  473 (898)
T COG5240         407 PSKKL-----SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLCTFIEDC---EYHQITVRILG  473 (898)
T ss_pred             cHHHH-----HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHHHHHhhc---chhHHHHHHHH
Confidence            22222     2344455544 3456778888899999888877765553     445677777655   34445555666


Q ss_pred             HHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHH
Q 013228          277 NITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVF  356 (447)
Q Consensus       277 nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a  356 (447)
                      -+....|....   -...+..+.+-+--++..+|..|..||..++.+.+...    ....+...|-+++++.|.+++..|
T Consensus       474 iLG~EgP~a~~---P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~----~~~sv~~~lkRclnD~DdeVRdrA  546 (898)
T COG5240         474 ILGREGPRAKT---PGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVV----SPQSVENALKRCLNDQDDEVRDRA  546 (898)
T ss_pred             HhcccCCCCCC---cchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccc----cHHHHHHHHHHHhhcccHHHHHHH
Confidence            55542221000   01133444444445678899999999999887653322    222356678889999999999998


Q ss_pred             HHHHHHHH
Q 013228          357 LKGLEKIL  364 (447)
Q Consensus       357 ~~~l~~l~  364 (447)
                      .-.+.++=
T Consensus       547 sf~l~~~~  554 (898)
T COG5240         547 SFLLRNMR  554 (898)
T ss_pred             HHHHHhhh
Confidence            88887764

>PF05536 Neurochondrin: Neurochondrin

Probab=98.12  E-value=0.00063  Score=65.78  Aligned_cols=237  Identities=17%  Similarity=0.167  Sum_probs=159.6

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhH---HHHHHhcCCHHHHHHHhccc------cchhHHHHHHHHHHHhc
Q 013228           83 AVPIFVKLLASPSDDIREQAVCALGNVAADSARC---RDLVLSEEALIPLLTQLNKH------AKLSMLRIATWTLSNFC  153 (447)
Q Consensus        83 ~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~---~~~~~~~~~l~~l~~~l~~~------~~~~~~~~a~~~L~~l~  153 (447)
                      .++..+.+|++.+++-|-.++..+.+++...+..   ++.+.+.=+...+-++|.+.      +....+.-++.+|..+|
T Consensus         6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~   85 (543)
T PF05536_consen    6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC   85 (543)
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            4667788898888888888888888988665532   33455555567777777542      23456677999999999


Q ss_pred             CCCCCCChhhHhhhHHHHHHhhccCCh-hHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHH
Q 013228          154 AGKPKPIFDQVRPALPALAQLVHSNDK-EVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTV  232 (447)
Q Consensus       154 ~~~~~~~~~~~~~~l~~l~~ll~~~~~-~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l  232 (447)
                      ..+.........+-+|.++..+.+.+. .+...++.+|..++..+.. .+.+++.|.++.|.+.+.+ .+.....|+.++
T Consensus        86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G-~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL  163 (543)
T PF05536_consen   86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEG-AKALLESGAVPALCEIIPN-QSFQMEIALNLL  163 (543)
T ss_pred             CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHh-HHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence            866444445567889999999987776 9999999999999965555 4679999999999999977 666778888888


Q ss_pred             HHhhcCChhhHHH---HHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHH-HHHH----HHcCChHHHHHHHhc
Q 013228          233 VNIAAGDDFQTQC---IINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEH-IQAV----IDAGLIGPLVNLLQN  304 (447)
Q Consensus       233 ~~l~~~~~~~~~~---~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~-~~~l----~~~~~~~~L~~~l~~  304 (447)
                      .+++.........   -.-..++..+...+... ....+-+++..|+.+....+.. ....    .-..+...+..++.+
T Consensus       164 ~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~-~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s  242 (543)
T PF05536_consen  164 LNLLSRLGQKSWAEDSQLLHSILPSLARDFSSF-HGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS  242 (543)
T ss_pred             HHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc
Confidence            8887644311100   00013445566666655 6677888888888887654211 1111    112245555566665


Q ss_pred             C-chhHHHHHHHHHHHhcC
Q 013228          305 A-EFDIKNWAARAISNATF  322 (447)
Q Consensus       305 ~-~~~v~~~a~~aL~~l~~  322 (447)
                      . .+.-|..+......+..
T Consensus       243 r~~~~~R~~al~Laa~Ll~  261 (543)
T PF05536_consen  243 RLTPSQRDPALNLAASLLD  261 (543)
T ss_pred             CCCHHHHHHHHHHHHHHHH
Confidence            4 45555555555555443

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=98.07  E-value=3.2e-05  Score=55.60  Aligned_cols=94  Identities=16%  Similarity=0.335  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccC
Q 013228          268 KTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC  347 (447)
Q Consensus       268 ~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~  347 (447)
                      |+.+..+|..++.+-+......++. +++.++..+.++++.||..|+++|.|++.....+....+.+  +++.|..+..+
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~~-Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~--IF~~L~kl~~D   79 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLDE-ILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNE--IFDALCKLSAD   79 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHHH-HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHcC
Confidence            6677788888776544555555555 89999999999999999999999999998654444444444  78899999999


Q ss_pred             CCHHHHHHHHHHHHHHHH
Q 013228          348 ADPEIVTVFLKGLEKILK  365 (447)
Q Consensus       348 ~~~~~~~~a~~~l~~l~~  365 (447)
                      .++.++..| +.|.++++
T Consensus        80 ~d~~Vr~~a-~~Ld~llk   96 (97)
T PF12755_consen   80 PDENVRSAA-ELLDRLLK   96 (97)
T ss_pred             CchhHHHHH-HHHHHHhc
Confidence            999987655 77777764

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.07  E-value=1.5e-05  Score=57.04  Aligned_cols=87  Identities=29%  Similarity=0.430  Sum_probs=69.4

Q ss_pred             HHHHHHhh-cCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 013228           41 VPRFVEFL-MREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDL  119 (447)
Q Consensus        41 v~~L~~ll-~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~  119 (447)
                      +|.|++.| ++++ +.+|..++++|+.+-.  +         ..++.|+.++.++++.+|..++++|+.+.         
T Consensus         1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPD-PQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG---------   59 (88)
T ss_dssp             HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred             CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence            57899999 6666 9999999999995532  2         35899999999999999999999999983         


Q ss_pred             HHhcCCHHHHHHHhccccchhHHHHHHHHHH
Q 013228          120 VLSEEALIPLLTQLNKHAKLSMLRIATWTLS  150 (447)
Q Consensus       120 ~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~  150 (447)
                        ....++.+...+.++.+..++..+..+|+
T Consensus        60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 --DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence              12368899999966666677888888774

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.06  E-value=0.0024  Score=57.53  Aligned_cols=224  Identities=17%  Similarity=0.113  Sum_probs=163.2

Q ss_pred             hhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCC-----c----HHHHHHHHhCcHHHHHHhcCCCCchh------Hh
Q 013228          162 DQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGT-----N----DEIQAVIEAGVCPRLVELLGHPSPSV------LT  226 (447)
Q Consensus       162 ~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~-----~----~~~~~~~~~~~~~~L~~lL~~~~~~v------~~  226 (447)
                      ....++++.++.+|.+.+..+...++..+..++..+     .    ..+..+++.++++.|++-+..-++.+      ..
T Consensus       121 lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~  200 (536)
T KOG2734|consen  121 LVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVH  200 (536)
T ss_pred             HHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhH
Confidence            344788999999999999999999999998888531     1    34566778899999999886544433      34


Q ss_pred             HHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh--
Q 013228          227 RALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHN-HKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQ--  303 (447)
Q Consensus       227 ~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~--  303 (447)
                      .++..+-|++...+.....+.+.|.+..|+.-+... .-...+..|..+++-+...+.++...+-.-+++..+++-+.  
T Consensus       201 ~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~y  280 (536)
T KOG2734|consen  201 NTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVY  280 (536)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchh
Confidence            567888899988888888888889999988855432 24456777778888777766666666667778888877654  


Q ss_pred             -cC------chhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 013228          304 -NA------EFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIA  376 (447)
Q Consensus       304 -~~------~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~  376 (447)
                       ..      ..+...+...+|+.+..  .+.++..++...++....-+++. ....+..++++|...+...+..      
T Consensus       281 k~~dP~~~~E~EmmeNLFdcLCs~lm--~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt------  351 (536)
T KOG2734|consen  281 KRHDPATVDEEEMMENLFDCLCSLLM--APANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGT------  351 (536)
T ss_pred             hccCCCCcCHHHHHHHHHHHHHHHhc--ChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCch------
Confidence             22      24566788888888877  45777888777777766656655 4456778888888887654432      


Q ss_pred             cccccHHHHHHHHhchHHHHHHH
Q 013228          377 IGDVNQYAQLVEEAEGLEKIENL  399 (447)
Q Consensus       377 ~~~~~~~~~~i~~~~~~~~l~~l  399 (447)
                           +.+..|-+.+|++.+-.+
T Consensus       352 -----~~C~kfVe~lGLrtiF~~  369 (536)
T KOG2734|consen  352 -----PNCNKFVEILGLRTIFPL  369 (536)
T ss_pred             -----HHHHHHHHHHhHHHHHHH
Confidence                 257778888888887765

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=98.06  E-value=0.0018  Score=64.21  Aligned_cols=346  Identities=16%  Similarity=0.109  Sum_probs=212.8

Q ss_pred             ccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhc--CCh
Q 013228           37 PFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAA--DSA  114 (447)
Q Consensus        37 ~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~--~~~  114 (447)
                      +....+..-++-+... +.++..++.-+++++..-+   ......+.++.+..+..+....+|..|...+.++..  +.+
T Consensus       235 k~elr~~~~~lc~d~~-~~Vr~~~a~~l~~~a~~~~---~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~  310 (759)
T KOG0211|consen  235 KRELRPIVQSLCQDDT-PMVRRAVASNLGNIAKVLE---SEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDD  310 (759)
T ss_pred             HHHHHHHHHhhccccc-hhhHHHHHhhhHHHHHHHH---HHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCc
Confidence            3334444445555555 8888888888888887332   266777899999999999889999999988888762  212


Q ss_pred             -hHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHH---------------------------------------HhcC
Q 013228          115 -RCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLS---------------------------------------NFCA  154 (447)
Q Consensus       115 -~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~---------------------------------------~l~~  154 (447)
                       ...     ....+.+++.. .+.+..++.......+                                       .++.
T Consensus       311 ~d~~-----~~~~~~l~~~~-~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~  384 (759)
T KOG0211|consen  311 DDVV-----KSLTESLVQAV-EDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLAC  384 (759)
T ss_pred             hhhh-----hhhhHHHHHHh-cChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhh
Confidence             111     12234444444 3333332222221111                                       1111


Q ss_pred             CCC--CCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHH
Q 013228          155 GKP--KPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTV  232 (447)
Q Consensus       155 ~~~--~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l  232 (447)
                      ...  .........++|.+..+..+.+..++...+..+..+..-.+.. + . -....+.++..+++..+.++......+
T Consensus       385 ~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~-~-t-i~~llp~~~~~l~de~~~V~lnli~~l  461 (759)
T KOG0211|consen  385 YLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKE-R-T-ISELLPLLIGNLKDEDPIVRLNLIDKL  461 (759)
T ss_pred             hcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcC-c-C-ccccChhhhhhcchhhHHHHHhhHHHH
Confidence            110  0011112344566666666777777776666666554322210 0 0 124567777788888899998888777


Q ss_pred             HHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHH
Q 013228          233 VNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNW  312 (447)
Q Consensus       233 ~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~  312 (447)
                      ..+-...+..-........++.+..+-... ...++.+..+.+-.++....   ..+++...-+.+...+.+....++..
T Consensus       462 s~~~~v~~v~g~~~~s~slLp~i~el~~d~-~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~v~~Ir~~  537 (759)
T KOG0211|consen  462 SLLEEVNDVIGISTVSNSLLPAIVELAEDL-LWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDHVYSIREA  537 (759)
T ss_pred             HHHHhccCcccchhhhhhhhhhhhhhccch-hHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhhHHHHHHH
Confidence            666544443333344556778888877777 78899998888888876322   23333334455555566667889999


Q ss_pred             HHHHHHHhcCCCC-HHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhc
Q 013228          313 AARAISNATFGGT-HEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAE  391 (447)
Q Consensus       313 a~~aL~~l~~~~~-~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~  391 (447)
                      |+..+..++..-. ...+.     ..++.+..+..+++.-.|...+.++..+.....+.                +....
T Consensus       538 aa~~l~~l~~~~G~~w~~~-----~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~e----------------i~~~~  596 (759)
T KOG0211|consen  538 AARNLPALVETFGSEWARL-----EEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQE----------------ITCED  596 (759)
T ss_pred             HHHHhHHHHHHhCcchhHH-----HhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccH----------------HHHHH
Confidence            9988888776322 11122     24666666666666677888888888777654332                33345


Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 013228          392 GLEKIENLRSHDNDEIHEKSVKILETYWC  420 (447)
Q Consensus       392 ~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  420 (447)
                      .++.+..+..++.++|+-.+.+.+.++..
T Consensus       597 Llp~~~~l~~D~vanVR~nvak~L~~i~~  625 (759)
T KOG0211|consen  597 LLPVFLDLVKDPVANVRINVAKHLPKILK  625 (759)
T ss_pred             HhHHHHHhccCCchhhhhhHHHHHHHHHh
Confidence            56888889999999999999888887655

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.02  E-value=0.011  Score=58.80  Aligned_cols=342  Identities=15%  Similarity=0.106  Sum_probs=196.6

Q ss_pred             HHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhc------CC-CCHHHHHHHHHHHHHHcCC--ChhhHHHHHhCCCh
Q 013228           14 LEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLM------RE-DYPQLQFEAAWALKNIVSG--TSEDTKVVIDHGAV   84 (447)
Q Consensus        14 ~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~------~~-~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i   84 (447)
                      ..|...+..++++.+++..     .|.++.+++.+.      .+ +++.-+..|++.+++++..  .+..-+..++.=++
T Consensus       390 ~Aa~~~l~~~~~KR~ke~l-----~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv  464 (1010)
T KOG1991|consen  390 TAALDFLTTLVSKRGKETL-----PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLV  464 (1010)
T ss_pred             HHHHHHHHHHHHhcchhhh-----hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHH
Confidence            4566666666665323322     346777777776      22 2356778888888888741  11111122333345


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCCh---
Q 013228           85 PIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIF---  161 (447)
Q Consensus        85 ~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~---  161 (447)
                      +.+...++++...+|..|+|+++.++...-.....+  ..++....+.|.++.+-.++..|+.+|..+.++.+....   
T Consensus       465 ~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~  542 (1010)
T KOG1991|consen  465 NHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVS  542 (1010)
T ss_pred             HHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHh
Confidence            667777788899999999999999994332222222  235677778886688889999999999999888743322   


Q ss_pred             hhHhhhHHHHHHhhccCChhHHHHHHHHH-HHhccCCcHHHHHHHHhCcHHHHHHhcCC---C---CchhHhHHHHHHHH
Q 013228          162 DQVRPALPALAQLVHSNDKEVMTDACRAL-FYLSEGTNDEIQAVIEAGVCPRLVELLGH---P---SPSVLTRALQTVVN  234 (447)
Q Consensus       162 ~~~~~~l~~l~~ll~~~~~~v~~~al~~l-~~l~~~~~~~~~~~~~~~~~~~L~~lL~~---~---~~~v~~~a~~~l~~  234 (447)
                      ..+.+.+..++++.+.-+.+....++..+ +..+..-......+. ..+...+.+++..   .   +.+-...|.++|..
T Consensus       543 ~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~T  621 (1010)
T KOG1991|consen  543 AHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGILRT  621 (1010)
T ss_pred             hhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHH
Confidence            23355666666666665555555544433 333322222212122 2455666666653   1   12233444444444


Q ss_pred             hh---c---CChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchh
Q 013228          235 IA---A---GDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFD  308 (447)
Q Consensus       235 l~---~---~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~  308 (447)
                      +.   .   ..+...+ -++..+++.+-.+|++. -.++-.+++..+.++....++.--.+..  +++.+.+.+.....+
T Consensus       622 i~Til~s~e~~p~vl~-~le~~~l~vi~~iL~~~-i~dfyeE~~ei~~~~t~~~~~Isp~mW~--ll~li~e~~~~~~~d  697 (1010)
T KOG1991|consen  622 ISTILLSLENHPEVLK-QLEPIVLPVIGFILKND-ITDFYEELLEIVSSLTFLSKEISPIMWG--LLELILEVFQDDGID  697 (1010)
T ss_pred             HHHHHHHHhccHHHHH-HHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhhhhhhhcccCHHHHH--HHHHHHHHHhhhhHH
Confidence            42   1   2222222 23345667777777777 7778888888887776544332222222  567777777777777


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHH-HHcCChHHHHhhccCC---CHHHHHHHHHHHHHHHHhhh
Q 013228          309 IKNWAARAISNATFGGTHEQIKYL-VREGCIKPLCDLLLCA---DPEIVTVFLKGLEKILKVGE  368 (447)
Q Consensus       309 v~~~a~~aL~~l~~~~~~~~~~~l-~~~~~l~~L~~ll~~~---~~~~~~~a~~~l~~l~~~~~  368 (447)
                      .-...+-+|.|+...+.+.....- ...-.++.+..++.+.   +.+ .+.|++.+..++-.+.
T Consensus       698 yf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d-~~~a~kLle~iiL~~k  760 (1010)
T KOG1991|consen  698 YFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSD-CESACKLLEVIILNCK  760 (1010)
T ss_pred             HHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHH-HHHHHHHHHHHHHHhc
Confidence            778888899998887655332110 0011233444445442   333 4456677777765443

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=98.00  E-value=0.012  Score=58.05  Aligned_cols=306  Identities=11%  Similarity=0.069  Sum_probs=183.3

Q ss_pred             cCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChH
Q 013228            6 WSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVP   85 (447)
Q Consensus         6 ~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~   85 (447)
                      .++-|.+...+.+.+.+.++..  .....+.. -.+...+..+.....+-++..|+++++..++.  +... -...+++.
T Consensus       460 ~~e~P~Ll~Ra~~~i~~fs~~~--~~~~~~~~-~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~--~vl~-~~~p~ild  533 (1005)
T KOG2274|consen  460 YQESPFLLLRAFLTISKFSSST--VINPQLLQ-HFLNATVNALTMDVPPPVKISAVRAFCGYCKV--KVLL-SLQPMILD  533 (1005)
T ss_pred             cccCHHHHHHHHHHHHHHHhhh--ccchhHHH-HHHHHHHHhhccCCCCchhHHHHHHHHhccCc--eecc-ccchHHHH
Confidence            4455777778888888777652  11111111 13444455555444378888999988888842  2111 12236778


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhc-cccchhHHHHHHHHHHHhcCCCCCCChhhH
Q 013228           86 IFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLN-KHAKLSMLRIATWTLSNFCAGKPKPIFDQV  164 (447)
Q Consensus        86 ~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  164 (447)
                      .|.++....+.++.-..+.+|+..+..+|+.... .+..+.|..+.+.. .+.|+.+...+--++..++... .......
T Consensus       534 ~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as-~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~~~g~m~  611 (1005)
T KOG2274|consen  534 GLLQLASKSSDEVLVLLMEALSSVVKLDPEFAAS-MESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-ANYGPMQ  611 (1005)
T ss_pred             HHHHHcccccHHHHHHHHHHHHHHhccChhhhhh-hhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-HhhcchH
Confidence            8888888888999999999999999888865443 34455665555543 4556766666666666666532 2222334


Q ss_pred             hhhHHHHHHhhccCC----hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhc-CCCCchhHhHHHHHHHHhhcCC
Q 013228          165 RPALPALAQLVHSND----KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELL-GHPSPSVLTRALQTVVNIAAGD  239 (447)
Q Consensus       165 ~~~l~~l~~ll~~~~----~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~a~~~l~~l~~~~  239 (447)
                      ...+|.++..+..++    .....-++..|..+.++.+.-.....-.-.+|.+.+.. .+++......+..||..+....
T Consensus       612 e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~  691 (1005)
T KOG2274|consen  612 ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVT  691 (1005)
T ss_pred             HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence            678999999998766    56666677777766655432223333445678887776 5567788888999999888766


Q ss_pred             hhhHHHHHhcCCh------HHHHHhhccCCchhHHHHHHHHHHHHh----cCCHHHHHHHHHcCChHHHHHHHh-cCchh
Q 013228          240 DFQTQCIINCGAL------PYLLGLLIHNHKKSIKTDACWTISNIT----AGNSEHIQAVIDAGLIGPLVNLLQ-NAEFD  308 (447)
Q Consensus       240 ~~~~~~~~~~~~l------~~l~~~l~~~~~~~v~~~a~~~l~nl~----~~~~~~~~~l~~~~~~~~L~~~l~-~~~~~  308 (447)
                      .++...--..++.      ..+..+|..    +.-..++..++.+.    .+.+.....-++. ++..++.-|. .+...
T Consensus       692 ~eq~~t~~~e~g~~~~yImqV~sqLLdp----~~sds~a~~VG~lV~tLit~a~~el~~n~d~-IL~Avisrmq~ae~ls  766 (1005)
T KOG2274|consen  692 LEQLLTWHDEPGHNLWYIMQVLSQLLDP----ETSDSAAAFVGPLVLTLITHASSELGPNLDQ-ILRAVISRLQQAETLS  766 (1005)
T ss_pred             HHHHHhhccCCCccHHHHHHHHHHHcCC----ccchhHHHHHhHHHHHHHHHHHHHhchhHHH-HHHHHHHHHHHhhhHH
Confidence            5443333232332      333444432    23333333444333    2222222222222 3343444333 46778


Q ss_pred             HHHHHHHHHHHhcCCC
Q 013228          309 IKNWAARAISNATFGG  324 (447)
Q Consensus       309 v~~~a~~aL~~l~~~~  324 (447)
                      +.+.-..+++.+....
T Consensus       767 viQsLi~VfahL~~t~  782 (1005)
T KOG2274|consen  767 VIQSLIMVFAHLVHTD  782 (1005)
T ss_pred             HHHHHHHHHHHHhhCC
Confidence            8888888999988764

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.00  E-value=0.0042  Score=56.08  Aligned_cols=229  Identities=12%  Similarity=0.110  Sum_probs=159.7

Q ss_pred             CCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC-----h----hhHHHHHhCCChHHHHHhhCCCC----
Q 013228           29 SAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGT-----S----EDTKVVIDHGAVPIFVKLLASPS----   95 (447)
Q Consensus        29 ~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~-----~----~~~~~~~~~~~i~~L~~ll~~~~----   95 (447)
                      +.....+++.++++.|+.+|.+.+ .++....+..+..++..+     .    .....+++.++++.|++-+..-+    
T Consensus       115 PdLYp~lveln~V~slL~LLgHeN-tDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvk  193 (536)
T KOG2734|consen  115 PDLYPILVELNAVQSLLELLGHEN-TDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVK  193 (536)
T ss_pred             hHHHHHHHHhccHHHHHHHhcCCC-chhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcch
Confidence            444557788999999999999999 799999999999988632     1    23456778899999998886533    


Q ss_pred             --HHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccc-cchhHHHHHHHHHHHhcCCCCCCChh-hHhhhHHHH
Q 013228           96 --DDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKH-AKLSMLRIATWTLSNFCAGKPKPIFD-QVRPALPAL  171 (447)
Q Consensus        96 --~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~l~~l  171 (447)
                        ..-...++..+-|+....+.+...+.+.|.+.-|+.-+... .-.....+|..++.-+..++...... ..-.++..+
T Consensus       194 eea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~l  273 (536)
T KOG2734|consen  194 EEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVL  273 (536)
T ss_pred             hhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHH
Confidence              33445778888899988888888888888888888755332 33456777888888887776322221 113344444


Q ss_pred             HHhh----ccC-----ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCCh--
Q 013228          172 AQLV----HSN-----DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD--  240 (447)
Q Consensus       172 ~~ll----~~~-----~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~--  240 (447)
                      ++-+    .++     ..+..++...+|+.+...+..+ ..++...+++...-.++. ....+..++.+|-....+.+  
T Consensus       274 L~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr-~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt  351 (536)
T KOG2734|consen  274 LRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANR-ERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGT  351 (536)
T ss_pred             HhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhh-hhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCch
Confidence            4433    221     2456777788888888766654 567777777766655655 55667888999988887776  


Q ss_pred             hhHHHHHhcCChHHHHHhhc
Q 013228          241 FQTQCIINCGALPYLLGLLI  260 (447)
Q Consensus       241 ~~~~~~~~~~~l~~l~~~l~  260 (447)
                      ..+..+++..++..+.....
T Consensus       352 ~~C~kfVe~lGLrtiF~~FM  371 (536)
T KOG2734|consen  352 PNCNKFVEILGLRTIFPLFM  371 (536)
T ss_pred             HHHHHHHHHHhHHHHHHHHh
Confidence            56677788777777666553

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=0.00044  Score=66.07  Aligned_cols=266  Identities=17%  Similarity=0.154  Sum_probs=154.1

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHH
Q 013228           39 GVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRD  118 (447)
Q Consensus        39 ~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~  118 (447)
                      +....|.+.|++.+++.++.-++--|+-..-++..       ..+.+.+-..|..++...-+.|..+++-+...+.. .+
T Consensus       413 ~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~-------~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~-~e  484 (929)
T KOG2062|consen  413 GITDYLLQQLKTAENEVVRHGACLGLGLAGMGSAN-------EEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN-QE  484 (929)
T ss_pred             cHHHHHHHHHHhccchhhhhhhhhhccchhccccc-------HHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc-HH
Confidence            35566677776666566777776665554443221       12345566666666666666666666665543331 11


Q ss_pred             HHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCc
Q 013228          119 LVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTN  198 (447)
Q Consensus       119 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~  198 (447)
                            ++..+...-.......+.+-..-.+.-.....       ..+.=+.+-+++.+.|+-+|.....++.---....
T Consensus       485 ------aiedm~~Ya~ETQHeki~RGl~vGiaL~~ygr-------qe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg  551 (929)
T KOG2062|consen  485 ------AIEDMLTYAQETQHEKIIRGLAVGIALVVYGR-------QEDADPLIKELLRDKDPILRYGGMYTLALAYVGTG  551 (929)
T ss_pred             ------HHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhh-------hhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccC
Confidence                  12333333322233444444332222222111       12444566678888888888877765542221121


Q ss_pred             HHHHHHHHhCcHHHHHHh-cCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHH
Q 013228          199 DEIQAVIEAGVCPRLVEL-LGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISN  277 (447)
Q Consensus       199 ~~~~~~~~~~~~~~L~~l-L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~n  277 (447)
                             ..+++..|+.. .++.+.+||+.|..+|+-++..+++.         ++..+.+|..+.++.||.-++.+|+-
T Consensus       552 -------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~---------~~s~V~lLses~N~HVRyGaA~ALGI  615 (929)
T KOG2062|consen  552 -------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ---------LPSTVSLLSESYNPHVRYGAAMALGI  615 (929)
T ss_pred             -------chhhHHHhhcccccccchHHHHHHHHHheeeEecChhh---------chHHHHHHhhhcChhhhhhHHHHHhh
Confidence                   12456777777 57889999999999999988877743         44567777766699999999999998


Q ss_pred             HhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCH
Q 013228          278 ITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADP  350 (447)
Q Consensus       278 l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~  350 (447)
                      .|.++...  .     .+..|-.+..+...-||+-|+.++.-+....++......  .++.+.+.+.+.+.+.
T Consensus       616 aCAGtG~~--e-----Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv--~~frk~l~kvI~dKhE  679 (929)
T KOG2062|consen  616 ACAGTGLK--E-----AINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKV--NGFRKQLEKVINDKHE  679 (929)
T ss_pred             hhcCCCcH--H-----HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchH--HHHHHHHHHHhhhhhh
Confidence            88864221  1     233334444555667888888888777654433322221  2234445555555444

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.98  E-value=2.6e-05  Score=55.76  Aligned_cols=87  Identities=31%  Similarity=0.447  Sum_probs=70.0

Q ss_pred             HHHHHHhh-ccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHH
Q 013228          168 LPALAQLV-HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCI  246 (447)
Q Consensus       168 l~~l~~ll-~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~  246 (447)
                      +|.|++.+ +++++.++..++++|+.+.   +.        ..++.|..++.++++.+|..|+++|+.+-          
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~---~~--------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG---DP--------EAIPALIELLKDEDPMVRRAAARALGRIG----------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT---HH--------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC---CH--------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence            57788888 8889999999999998542   11        34799999999999999999999999763          


Q ss_pred             HhcCChHHHHHhhccCCchhHHHHHHHHHH
Q 013228          247 INCGALPYLLGLLIHNHKKSIKTDACWTIS  276 (447)
Q Consensus       247 ~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~  276 (447)
                       ....++.|.+++.++.+..+|..|+.+|+
T Consensus        60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 -DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence             12478889999988746777999988875

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.96  E-value=1.7e-05  Score=50.84  Aligned_cols=55  Identities=25%  Similarity=0.480  Sum_probs=46.9

Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHh
Q 013228          265 KSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNA  320 (447)
Q Consensus       265 ~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l  320 (447)
                      +.+|..|+|+|++++...++..+..... +++.|+.++.++++.||..|+++|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~-~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPE-LLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHH-HHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHH-HHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            4689999999999987777766665444 899999999988899999999999875

...

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.94  E-value=0.019  Score=57.37  Aligned_cols=108  Identities=15%  Similarity=0.107  Sum_probs=71.5

Q ss_pred             CCHHHHHHHHHHHHHHHccCC-CCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHH
Q 013228            8 DDNNMQLEATTHIRKLLSNAR-SAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPI   86 (447)
Q Consensus         8 ~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~   86 (447)
                      .++.....|++.+..+++.-. +...+-..+.-+++.+...++++. --+|.+|||+++.++..  ++.+.-.-..+++.
T Consensus       430 ~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~-g~Lrarac~vl~~~~~~--df~d~~~l~~ale~  506 (1010)
T KOG1991|consen  430 KNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPY-GYLRARACWVLSQFSSI--DFKDPNNLSEALEL  506 (1010)
T ss_pred             cChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCch-hHHHHHHHHHHHHHHhc--cCCChHHHHHHHHH
Confidence            446666677777777664321 222233344446677777778888 68999999999999952  22222222345666


Q ss_pred             HHHhhC-CCCHHHHHHHHHHHHHhhcCChhHHH
Q 013228           87 FVKLLA-SPSDDIREQAVCALGNVAADSARCRD  118 (447)
Q Consensus        87 L~~ll~-~~~~~i~~~a~~~L~~l~~~~~~~~~  118 (447)
                      ..+.|. +.+..++-.|+.+|..+..+.+....
T Consensus       507 t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e  539 (1010)
T KOG1991|consen  507 THNCLLNDNELPVRVEAALALQSFISNQEQADE  539 (1010)
T ss_pred             HHHHhccCCcCchhhHHHHHHHHHHhcchhhhh
Confidence            677666 67788999999999999877664433

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.87  E-value=0.011  Score=58.36  Aligned_cols=132  Identities=14%  Similarity=0.055  Sum_probs=91.8

Q ss_pred             cCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChH
Q 013228            6 WSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVP   85 (447)
Q Consensus         6 ~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~   85 (447)
                      .+.|.+++.-.-.+|...+...  +  +.++-  +++.+.+=+++++ +.+|..|++.++.+=.  ++...     .+++
T Consensus        65 ~trd~ElKrL~ylYl~~yak~~--P--~~~lL--avNti~kDl~d~N-~~iR~~AlR~ls~l~~--~el~~-----~~~~  130 (757)
T COG5096          65 ATRDVELKRLLYLYLERYAKLK--P--ELALL--AVNTIQKDLQDPN-EEIRGFALRTLSLLRV--KELLG-----NIID  130 (757)
T ss_pred             HhcCHHHHHHHHHHHHHHhccC--H--HHHHH--HHHHHHhhccCCC-HHHHHHHHHHHHhcCh--HHHHH-----HHHH
Confidence            3455555555555555555542  1  11111  4666777778888 8999999988887744  23222     3568


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCC
Q 013228           86 IFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAG  155 (447)
Q Consensus        86 ~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  155 (447)
                      ++.+++.++++.+|+.|+.++.++-.-++   +.+.+.|.+..+..++ .++|+.+..+|+.++..+...
T Consensus       131 ~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~-~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         131 PIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELV-ADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             HHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHh-hCCCchHHHHHHHHHHHhchh
Confidence            88999999999999999999999976544   3444555566666666 888999999999999888755

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.87  E-value=0.0012  Score=63.77  Aligned_cols=280  Identities=17%  Similarity=0.133  Sum_probs=149.3

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 013228           42 PRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVL  121 (447)
Q Consensus        42 ~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~  121 (447)
                      +.+-.++.+.. ..+..+|++++..+...++....     ..+..|-.++.++...+|-.|.++|..++.-.|..   +.
T Consensus       248 ~fl~s~l~~K~-emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~---v~  318 (865)
T KOG1078|consen  248 PFLESCLRHKS-EMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQA---VT  318 (865)
T ss_pred             HHHHHHHhchh-HHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcc---cc
Confidence            33444555566 67778888888877764433221     15666777777788888888888888887655431   11


Q ss_pred             hcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCC---hhHHHHHHHHHHHhccCCc
Q 013228          122 SEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSND---KEVMTDACRALFYLSEGTN  198 (447)
Q Consensus       122 ~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~---~~v~~~al~~l~~l~~~~~  198 (447)
                      .  +-..+-.++ ++.+..+-..|...|..--.   ..   .....+..+..+..+-+   .-+..+++.+++...   +
T Consensus       319 ~--cN~elE~lI-td~NrsIat~AITtLLKTG~---e~---sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~f---p  386 (865)
T KOG1078|consen  319 V--CNLDLESLI-TDSNRSIATLAITTLLKTGT---ES---SVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKF---P  386 (865)
T ss_pred             c--cchhHHhhh-cccccchhHHHHHHHHHhcc---hh---HHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhc---c
Confidence            1  111122222 33333332223222222111   11   11222222333333222   233333444443332   2


Q ss_pred             HHHHHHHHhCcHHHHHHhcCC-CCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHH
Q 013228          199 DEIQAVIEAGVCPRLVELLGH-PSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISN  277 (447)
Q Consensus       199 ~~~~~~~~~~~~~~L~~lL~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~n  277 (447)
                      -.     ..+.+..|..+|.+ +..+.+.....++..+...+++...     .++..|...+.+.   +...-+...+.-
T Consensus       387 ~k-----~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDc---e~~~i~~rILhl  453 (865)
T KOG1078|consen  387 RK-----HTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDC---EFTQIAVRILHL  453 (865)
T ss_pred             HH-----HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhc---cchHHHHHHHHH
Confidence            11     12445666666644 4456677777777777776665444     3455677766554   444555555655


Q ss_pred             HhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHH
Q 013228          278 ITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFL  357 (447)
Q Consensus       278 l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~  357 (447)
                      +....|.   .......+..+.+.+.-++..+|..|..+|.++.... +...     ..+...|.+++.+.|.+++..|.
T Consensus       454 LG~EgP~---a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~-~~l~-----~sI~vllkRc~~D~DdevRdrAt  524 (865)
T KOG1078|consen  454 LGKEGPK---APNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQD-VVLL-----PSILVLLKRCLNDSDDEVRDRAT  524 (865)
T ss_pred             HhccCCC---CCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCC-CCcc-----ccHHHHHHHHhcCchHHHHHHHH
Confidence            5442211   0111223444555555567888889999999888432 2111     23456677888888889998888


Q ss_pred             HHHHHHH
Q 013228          358 KGLEKIL  364 (447)
Q Consensus       358 ~~l~~l~  364 (447)
                      -.+..+-
T Consensus       525 f~l~~l~  531 (865)
T KOG1078|consen  525 FYLKNLE  531 (865)
T ss_pred             HHHHHhh
Confidence            8877776

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.85  E-value=0.0033  Score=60.83  Aligned_cols=285  Identities=14%  Similarity=0.152  Sum_probs=168.1

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhh
Q 013228           84 VPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQ  163 (447)
Q Consensus        84 i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  163 (447)
                      .+.+-..+++....+...+++++.++....+.  ...   ..+..+-.++ +++...++..|..+|..++...|....  
T Consensus       247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~~r--~l~---pavs~Lq~fl-ssp~~~lRfaAvRtLnkvAm~~P~~v~--  318 (865)
T KOG1078|consen  247 FPFLESCLRHKSEMVIYEAARAIVSLPNTNSR--ELA---PAVSVLQLFL-SSPKVALRFAAVRTLNKVAMKHPQAVT--  318 (865)
T ss_pred             HHHHHHHHhchhHHHHHHHHHHHhhccccCHh--hcc---hHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHhCCcccc--
Confidence            34555566677888888888888888754432  111   1333333333 677778888899999888876543322  


Q ss_pred             HhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhH
Q 013228          164 VRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQT  243 (447)
Q Consensus       164 ~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~  243 (447)
                        -+-.-|-.++.+.+-.+-..|+..+..-.  .+.....+     +..+..++.+-+.+.+.-+..++..+|...+...
T Consensus       319 --~cN~elE~lItd~NrsIat~AITtLLKTG--~e~sv~rL-----m~qI~~fv~disDeFKivvvdai~sLc~~fp~k~  389 (865)
T KOG1078|consen  319 --VCNLDLESLITDSNRSIATLAITTLLKTG--TESSVDRL-----MKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKH  389 (865)
T ss_pred             --ccchhHHhhhcccccchhHHHHHHHHHhc--chhHHHHH-----HHHHHHHHHhccccceEEeHHHHHHHHhhccHHH
Confidence              22233455566666666666665554332  22222322     2333333333334444444444445554444222


Q ss_pred             HHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCC
Q 013228          244 QCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFG  323 (447)
Q Consensus       244 ~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~  323 (447)
                           .+.+..|..+|+.....+.++..+.++..+....++...     .++..|+..+.+.  +...-+...|.-+...
T Consensus       390 -----~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDc--e~~~i~~rILhlLG~E  457 (865)
T KOG1078|consen  390 -----TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDC--EFTQIAVRILHLLGKE  457 (865)
T ss_pred             -----HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhc--cchHHHHHHHHHHhcc
Confidence                 245667888887654678888888888888775555432     3566677777632  3334556666555543


Q ss_pred             CCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCC
Q 013228          324 GTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHD  403 (447)
Q Consensus       324 ~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~  403 (447)
                      +..    .-.....+..+.+-..-.+..++..|+.++.++...++...                  ....-.+.+.+++.
T Consensus       458 gP~----a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~------------------~sI~vllkRc~~D~  515 (865)
T KOG1078|consen  458 GPK----APNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLL------------------PSILVLLKRCLNDS  515 (865)
T ss_pred             CCC----CCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCcc------------------ccHHHHHHHHhcCc
Confidence            211    11112345555666666778889999999999984333321                  12234555778899


Q ss_pred             CHHHHHHHHHHHHHhc
Q 013228          404 NDEIHEKSVKILETYW  419 (447)
Q Consensus       404 ~~~v~~~a~~~l~~~~  419 (447)
                      +.+++++|.-.+...-
T Consensus       516 DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  516 DDEVRDRATFYLKNLE  531 (865)
T ss_pred             hHHHHHHHHHHHHHhh
Confidence            9999999998888775

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.82  E-value=0.00017  Score=51.83  Aligned_cols=67  Identities=16%  Similarity=0.293  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhhcCChhHHHHHHh
Q 013228           56 LQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLL--ASPSDDIREQAVCALGNVAADSARCRDLVLS  122 (447)
Q Consensus        56 v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll--~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~  122 (447)
                      .+...+++|++++..++..++.+.+.|+++.++...  +..+|-++++|++++.+|+..+++.++.+.+
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            366788999999999999999999999999999865  3478999999999999999999988877654

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.82  E-value=0.013  Score=59.65  Aligned_cols=237  Identities=14%  Similarity=0.090  Sum_probs=147.4

Q ss_pred             HHHHHhccccchhHHHHHHHHHHHhcCCCCC--CChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHH
Q 013228          128 PLLTQLNKHAKLSMLRIATWTLSNFCAGKPK--PIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVI  205 (447)
Q Consensus       128 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~  205 (447)
                      .+.....++.+..++..+...|..++...+.  ........+...+..-+++.....+...+.++..+....+.....++
T Consensus       657 ~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i  736 (1176)
T KOG1248|consen  657 TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI  736 (1176)
T ss_pred             HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            3444444566788999999999999987321  12223356667777778888888999999999888866553223344


Q ss_pred             HhCcHHHHHHhcCCCCchhHhHHHHHHHHhhc-------CChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHH
Q 013228          206 EAGVCPRLVELLGHPSPSVLTRALQTVVNIAA-------GDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNI  278 (447)
Q Consensus       206 ~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~-------~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl  278 (447)
                      ..-+.+.++.. ++.+...|..+..+|..++.       +++. ....++ .+++.+...+... ...+......++..+
T Consensus       737 ~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~ln-efl~~Isagl~gd-~~~~~as~Ivai~~i  812 (1176)
T KOG1248|consen  737 PKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILN-EFLSIISAGLVGD-STRVVASDIVAITHI  812 (1176)
T ss_pred             HHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHH-HHHHHHHhhhccc-HHHHHHHHHHHHHHH
Confidence            43344444444 77888888888888888773       1111 111111 2344444444333 333333324444444


Q ss_pred             hcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHH
Q 013228          279 TAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLK  358 (447)
Q Consensus       279 ~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~  358 (447)
                      ..........-.-.+++..+..++.+..++++..|+.++.-++..-........ ...+++.+..++++....++..+-.
T Consensus       813 l~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~-~~~LL~sll~ls~d~k~~~r~Kvr~  891 (1176)
T KOG1248|consen  813 LQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPH-LEELLPSLLALSHDHKIKVRKKVRL  891 (1176)
T ss_pred             HHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhh-HHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            432222111112223555566667788999999999999988887544443332 2246788888888888899999999


Q ss_pred             HHHHHHHhhhh
Q 013228          359 GLEKILKVGEA  369 (447)
Q Consensus       359 ~l~~l~~~~~~  369 (447)
                      .|..+++....
T Consensus       892 LlekLirkfg~  902 (1176)
T KOG1248|consen  892 LLEKLIRKFGA  902 (1176)
T ss_pred             HHHHHHHHhCH
Confidence            99999876544

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.81  E-value=0.0067  Score=57.48  Aligned_cols=262  Identities=14%  Similarity=0.121  Sum_probs=157.9

Q ss_pred             HHHHHHHcCCChhhHHHHHhCCChHHHHHhh----------CCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHH
Q 013228           61 AWALKNIVSGTSEDTKVVIDHGAVPIFVKLL----------ASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLL  130 (447)
Q Consensus        61 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll----------~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~  130 (447)
                      +.+|.-++. ++.....+....++..|.++-          ...++.+...|+++|+|+...++..|..+.+.+....++
T Consensus         2 L~~LRiLsR-d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~   80 (446)
T PF10165_consen    2 LETLRILSR-DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC   80 (446)
T ss_pred             HHHHHHHcc-CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence            344444555 455555555555666666554          236889999999999999999999999999999999999


Q ss_pred             HHhcccc----chhHHHHHHHHHHHhcCCCCCCChhhH--hhhHHHHHHhhc----c-------------CChhHHHHHH
Q 013228          131 TQLNKHA----KLSMLRIATWTLSNFCAGKPKPIFDQV--RPALPALAQLVH----S-------------NDKEVMTDAC  187 (447)
Q Consensus       131 ~~l~~~~----~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~l~~l~~ll~----~-------------~~~~v~~~al  187 (447)
                      ..|....    +.++.......+.-++...+.......  .+++..+...+.    .             .+......++
T Consensus        81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL  160 (446)
T PF10165_consen   81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL  160 (446)
T ss_pred             HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence            9996542    566777777777777765533333322  344554444332    1             1455677889


Q ss_pred             HHHHHhccCCcHHHH-HHHH--hCcHHHHHHhc--C---CCCchhHhHHHHHHHHhhcCChhh-------HH----HHHh
Q 013228          188 RALFYLSEGTNDEIQ-AVIE--AGVCPRLVELL--G---HPSPSVLTRALQTVVNIAAGDDFQ-------TQ----CIIN  248 (447)
Q Consensus       188 ~~l~~l~~~~~~~~~-~~~~--~~~~~~L~~lL--~---~~~~~v~~~a~~~l~~l~~~~~~~-------~~----~~~~  248 (447)
                      +.+.|+......... ....  ..++..+..++  .   .+.......++.+|.|+-......       ..    ...+
T Consensus       161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~  240 (446)
T PF10165_consen  161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN  240 (446)
T ss_pred             HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC
Confidence            999999865543321 1111  12334444442  1   122456667777777763211110       00    0112


Q ss_pred             cCChHHHHHhhcc----CCc---hhHHHHHHHHHHHHhcCCHHHHHHHHH----------------cCChHHHHHHHhcC
Q 013228          249 CGALPYLLGLLIH----NHK---KSIKTDACWTISNITAGNSEHIQAVID----------------AGLIGPLVNLLQNA  305 (447)
Q Consensus       249 ~~~l~~l~~~l~~----~~~---~~v~~~a~~~l~nl~~~~~~~~~~l~~----------------~~~~~~L~~~l~~~  305 (447)
                      ...+..++.+|..    ...   .+.-.-.+.+|.+++..+...++++..                ..+-..|++++.+.
T Consensus       241 ~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~  320 (446)
T PF10165_consen  241 MDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP  320 (446)
T ss_pred             hHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC
Confidence            2345556666532    111   133444566777777765554444432                23466788888888


Q ss_pred             chhHHHHHHHHHHHhcCC
Q 013228          306 EFDIKNWAARAISNATFG  323 (447)
Q Consensus       306 ~~~v~~~a~~aL~~l~~~  323 (447)
                      .+.++..+...|..++..
T Consensus       321 ~~~~k~~vaellf~Lc~~  338 (446)
T PF10165_consen  321 DPQLKDAVAELLFVLCKE  338 (446)
T ss_pred             CchHHHHHHHHHHHHHhh
Confidence            899999999999888764

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.73  E-value=4.5e-05  Score=48.79  Aligned_cols=55  Identities=31%  Similarity=0.439  Sum_probs=47.1

Q ss_pred             hhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHh
Q 013228          139 LSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYL  193 (447)
Q Consensus       139 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l  193 (447)
                      +.++..++++|.+++...+.........++|.|..+|+++++.|+..++++|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            3688999999999887765555556689999999999999999999999999875

...

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=97.67  E-value=0.00049  Score=67.41  Aligned_cols=190  Identities=18%  Similarity=0.126  Sum_probs=129.7

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHH--------HHHh----cCCHHHHHHHhccccchhHHHHHHHHHH
Q 013228           83 AVPIFVKLLASPSDDIREQAVCALGNVAADSARCRD--------LVLS----EEALIPLLTQLNKHAKLSMLRIATWTLS  150 (447)
Q Consensus        83 ~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~--------~~~~----~~~l~~l~~~l~~~~~~~~~~~a~~~L~  150 (447)
                      +-..++.+|.+  +++-..+..++.-+..+++....        .+.+    ..++|.+++... ..+...+..-..+|.
T Consensus       816 ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~-t~~~~~K~~yl~~Ls  892 (1030)
T KOG1967|consen  816 IAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFE-TAPGSQKHNYLEALS  892 (1030)
T ss_pred             HHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhc-cCCccchhHHHHHHH
Confidence            33455666644  55556666777777666544321        1222    245777777773 455667777888888


Q ss_pred             HhcCCCCCCChh-hHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCC---chhHh
Q 013228          151 NFCAGKPKPIFD-QVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPS---PSVLT  226 (447)
Q Consensus       151 ~l~~~~~~~~~~-~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~---~~v~~  226 (447)
                      ++..+-|..... ....++|.|++.|.-+|..++..++.++.-+......... -.-.-++|.++.+-.+.+   ..+|.
T Consensus       893 hVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t-~~~~Tlvp~lLsls~~~~n~~~~VR~  971 (1030)
T KOG1967|consen  893 HVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT-EHLSTLVPYLLSLSSDNDNNMMVVRE  971 (1030)
T ss_pred             HHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch-HHHhHHHHHHHhcCCCCCcchhHHHH
Confidence            888765442222 2377889999999999999999999999877754433222 112246777777766655   67899


Q ss_pred             HHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHH
Q 013228          227 RALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISN  277 (447)
Q Consensus       227 ~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~n  277 (447)
                      .|+.++..+.+.-|...-......++..+.+.|.++ ..-+|++|+.+=.+
T Consensus       972 ~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen  972 DALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTRQN 1021 (1030)
T ss_pred             HHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHhhh
Confidence            999999999986554444445557888999999999 88999999876544

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.66  E-value=0.00016  Score=42.93  Aligned_cols=39  Identities=33%  Similarity=0.629  Sum_probs=35.7

Q ss_pred             hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 013228           72 SEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVA  110 (447)
Q Consensus        72 ~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~  110 (447)
                      ++.+..+.+.|+++.|++++.++++++++.++|+|+|++
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            347778899999999999999999999999999999996

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.65  E-value=0.0077  Score=58.11  Aligned_cols=218  Identities=14%  Similarity=0.096  Sum_probs=120.0

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhh
Q 013228           84 VPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQ  163 (447)
Q Consensus        84 i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  163 (447)
                      +..+..+|.+.++.++..|+.+|.+++.++...+.      +...++.++.+.+|..++--.+.-|..+.    ......
T Consensus       245 i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~------Aa~~~i~l~~kesdnnvklIvldrl~~l~----~~~~~i  314 (948)
T KOG1058|consen  245 IRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKA------AASTYIDLLVKESDNNVKLIVLDRLSELK----ALHEKI  314 (948)
T ss_pred             HHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHH------HHHHHHHHHHhccCcchhhhhHHHHHHHh----hhhHHH
Confidence            44555666666666666666666666554432221      13445555544444444444444444443    122233


Q ss_pred             HhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCc-HHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhh
Q 013228          164 VRPALPALAQLVHSNDKEVMTDACRALFYLSEGTN-DEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQ  242 (447)
Q Consensus       164 ~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~-~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~  242 (447)
                      ..+.+-.++++|.++|-+++..++.....++.... +..-.+++..+...--. =.+++...|..-+.++...+...++.
T Consensus       315 l~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLiktih~cav~Fp~~  393 (948)
T KOG1058|consen  315 LQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTIHACAVKFPEV  393 (948)
T ss_pred             HHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHHHHHhhcChHH
Confidence            45666667788899999999999998888875432 11111222111111000 01234566888888888888766655


Q ss_pred             HHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCchhHHHHHHHHHHHhc
Q 013228          243 TQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQ-NAEFDIKNWAARAISNAT  321 (447)
Q Consensus       243 ~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~-~~~~~v~~~a~~aL~~l~  321 (447)
                      ..     .+++.+++.+.+. ++.........+.......|..+..     ++..|+.-+. -...++.+-|+|.++..+
T Consensus       394 aa-----tvV~~ll~fisD~-N~~aas~vl~FvrE~iek~p~Lr~~-----ii~~l~~~~~~irS~ki~rgalwi~GeYc  462 (948)
T KOG1058|consen  394 AA-----TVVSLLLDFISDS-NEAAASDVLMFVREAIEKFPNLRAS-----IIEKLLETFPQIRSSKICRGALWILGEYC  462 (948)
T ss_pred             HH-----HHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhCchHHHH-----HHHHHHHhhhhhcccccchhHHHHHHHHH
Confidence            44     4677899999887 6665555555555554444443332     3333443333 134555566666666655


Q ss_pred             CC
Q 013228          322 FG  323 (447)
Q Consensus       322 ~~  323 (447)
                      ..
T Consensus       463 e~  464 (948)
T KOG1058|consen  463 EG  464 (948)
T ss_pred             hh
Confidence            53

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.65  E-value=0.014  Score=52.67  Aligned_cols=203  Identities=12%  Similarity=0.053  Sum_probs=143.5

Q ss_pred             HHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhh-----HHHHHhcCChHHHHHhhccCCchhHHHHHHHHHH
Q 013228          202 QAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQ-----TQCIINCGALPYLLGLLIHNHKKSIKTDACWTIS  276 (447)
Q Consensus       202 ~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~-----~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~  276 (447)
                      +.+...+.+..|+..|..-+.+.|+.+..+.+++.+.....     ...+. ...-+.+..++....++++-..+..+|.
T Consensus        70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~-~~~peil~~L~~gy~~~dial~~g~mlR  148 (335)
T PF08569_consen   70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLE-RHRPEILDILLRGYENPDIALNCGDMLR  148 (335)
T ss_dssp             HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHH-T--THHHHHHHHGGGSTTTHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHH-hCCHHHHHHHHHHhcCccccchHHHHHH
Confidence            45667799999999999999999999999999998654322     22332 2323444444443335566666777777


Q ss_pred             HHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHc---CChHHHHhhccCCCHHHH
Q 013228          277 NITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVRE---GCIKPLCDLLLCADPEIV  353 (447)
Q Consensus       277 nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~---~~l~~L~~ll~~~~~~~~  353 (447)
                      .++.. +...+.++....+..+.+.++.++.++...|...+..+... .+.....+...   .+......++.+++.-++
T Consensus       149 ec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~-hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk  226 (335)
T PF08569_consen  149 ECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTR-HKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK  226 (335)
T ss_dssp             HHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHS-SHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred             HHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence            77654 56677888888999999999999999999999999988776 34444444443   346677889999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 013228          354 TVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILET  417 (447)
Q Consensus       354 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~  417 (447)
                      ..+++.|..++........          ..+.+.+..-++.+..++.+++..++-.|=.+..-
T Consensus       227 rqslkLL~ellldr~n~~v----------m~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKv  280 (335)
T PF08569_consen  227 RQSLKLLGELLLDRSNFNV----------MTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKV  280 (335)
T ss_dssp             HHHHHHHHHHHHSGGGHHH----------HHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHchhHHHH----------HHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHH
Confidence            9999999999976655332          24566667778889999999998888777666554

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=97.65  E-value=0.00019  Score=65.09  Aligned_cols=275  Identities=18%  Similarity=0.122  Sum_probs=151.0

Q ss_pred             cccCCCHHHHHHHHHHHHHHHccCC----CCchhhhhccCCHHHHHH-------hhcCCCCHHHHHHHHHHHHHHcCCCh
Q 013228            4 GVWSDDNNMQLEATTHIRKLLSNAR----SAPTEEVIPFGVVPRFVE-------FLMREDYPQLQFEAAWALKNIVSGTS   72 (447)
Q Consensus         4 ~l~s~~~~~~~~a~~~l~~l~~~~~----~~~~~~~~~~~~v~~L~~-------ll~~~~~~~v~~~a~~~L~~l~~~~~   72 (447)
                      ++...++++++.++.++.++..+-.    ++..+.-...|.+-...-       ...+.. +..+..++.++.++.....
T Consensus       303 ~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~-~Tl~~s~Cdals~i~~~~f  381 (728)
T KOG4535|consen  303 CMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEH-PTLQASACDALSSILPEAF  381 (728)
T ss_pred             cCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcC-CCchhHHHHHHhhcCchhh
Confidence            5667789999999999988765421    222222222222211110       112233 4567777777777765221


Q ss_pred             hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHh
Q 013228           73 EDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNF  152 (447)
Q Consensus        73 ~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l  152 (447)
                      +.-..-.+.-.+..+...-++.+.-++..|.++++-+.-+.....+.....++...++..+ .+..-..+..++|+++++
T Consensus       382 ~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl-~d~~ln~r~KaawtlgnI  460 (728)
T KOG4535|consen  382 SNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSL-EDKSLNVRAKAAWSLGNI  460 (728)
T ss_pred             cCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHh-hhHhHhHHHHHHHHhhhh
Confidence            1100000000111111222234555777888888887766554444444445555566666 454567888999999998


Q ss_pred             cCCC----CCCChhhH---hhhHHHHHHhhc---cCChhHHHHHHHHHHHhccCCcHHHH---HHHHhCcHHHHHHh-cC
Q 013228          153 CAGK----PKPIFDQV---RPALPALAQLVH---SNDKEVMTDACRALFYLSEGTNDEIQ---AVIEAGVCPRLVEL-LG  218 (447)
Q Consensus       153 ~~~~----~~~~~~~~---~~~l~~l~~ll~---~~~~~v~~~al~~l~~l~~~~~~~~~---~~~~~~~~~~L~~l-L~  218 (447)
                      +..-    |.......   ...+..++..-.   -...+|+..+.++|+|+...-+...+   .....+.+..+... .-
T Consensus       461 TdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~  540 (728)
T KOG4535|consen  461 TDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLT  540 (728)
T ss_pred             HHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceec
Confidence            7432    33322222   222223333222   23578999999999998843221100   01111222222222 23


Q ss_pred             CCCchhHhHHHHHHHHhhcCChh-hHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc
Q 013228          219 HPSPSVLTRALQTVVNIAAGDDF-QTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA  280 (447)
Q Consensus       219 ~~~~~v~~~a~~~l~~l~~~~~~-~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~  280 (447)
                      .....|+..+|.+++|+..+..- ....-....+++.|..++.+..+.++|..|+.+|.--..
T Consensus       541 ~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~  603 (728)
T KOG4535|consen  541 EAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK  603 (728)
T ss_pred             ccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence            35678999999999999975432 111122334567788888766689999999998876654

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=97.64  E-value=0.0069  Score=55.37  Aligned_cols=405  Identities=11%  Similarity=0.067  Sum_probs=196.8

Q ss_pred             cccCCCHHHHHHHHHHHHHHHccCCCCc--------------hhhhhccC---CHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 013228            4 GVWSDDNNMQLEATTHIRKLLSNARSAP--------------TEEVIPFG---VVPRFVEFLMREDYPQLQFEAAWALKN   66 (447)
Q Consensus         4 ~l~s~~~~~~~~a~~~l~~l~~~~~~~~--------------~~~~~~~~---~v~~L~~ll~~~~~~~v~~~a~~~L~~   66 (447)
                      .|++.++..+..|+..+..++.++ ...              -..++...   .-..|+-.|..+.++.+..+++.||.+
T Consensus        55 ~lkd~~~~~ra~alqv~~~~l~gs-k~fls~a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~  133 (728)
T KOG4535|consen   55 TLKDPSPKTRACALQVLSAILEGS-KQFLSVAEDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLAN  133 (728)
T ss_pred             ecCCCChhHHHHHHHHHHHHHHhh-HHHHHHHhccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            467788888888888888777553 111              11122221   223455555555557899999999999


Q ss_pred             HcCCChhhHHHH-HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCC-------------HHHHHHH
Q 013228           67 IVSGTSEDTKVV-IDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEA-------------LIPLLTQ  132 (447)
Q Consensus        67 l~~~~~~~~~~~-~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~-------------l~~l~~~  132 (447)
                      +....+-.+-.+ .-..++..+..++++.++.++-.++..++.+...+....+.-...+.             .+..-+.
T Consensus       134 lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~  213 (728)
T KOG4535|consen  134 LVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKK  213 (728)
T ss_pred             HHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHh
Confidence            998665544332 11234566667788899999999999998887533221111000000             0000000


Q ss_pred             hcc-------------------------------------------------ccchhHHHHHHHHHHHhcCCCCCCChhh
Q 013228          133 LNK-------------------------------------------------HAKLSMLRIATWTLSNFCAGKPKPIFDQ  163 (447)
Q Consensus       133 l~~-------------------------------------------------~~~~~~~~~a~~~L~~l~~~~~~~~~~~  163 (447)
                      |-.                                                 .....++-.+..+|..++++. ......
T Consensus       214 l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~-~~~~~~  292 (728)
T KOG4535|consen  214 LPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYF-SMTQAY  292 (728)
T ss_pred             cCCCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHH-HHHHHH
Confidence            000                                                 001123333444443333321 000000


Q ss_pred             HhhhHHHHHHhhccCChhHHHHHHHHHHHhccC-----CcHHHHHHHHhCcHHHHHH------hc-CCCCchhHhHHHHH
Q 013228          164 VRPALPALAQLVHSNDKEVMTDACRALFYLSEG-----TNDEIQAVIEAGVCPRLVE------LL-GHPSPSVLTRALQT  231 (447)
Q Consensus       164 ~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~-----~~~~~~~~~~~~~~~~L~~------lL-~~~~~~v~~~a~~~  231 (447)
                      ...+...+...+.+.++.++.++..++..+...     .++..+.-...+.+-.+..      .. .+..+..+..+|..
T Consensus       293 ~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cda  372 (728)
T KOG4535|consen  293 LMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDA  372 (728)
T ss_pred             HHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHH
Confidence            112222233334466788888888777665531     1111111122222222111      11 22334556677777


Q ss_pred             HHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHH
Q 013228          232 VVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKN  311 (447)
Q Consensus       232 l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~  311 (447)
                      +.++.....+....-.....+..+...=++. +.-++.+|..++.-+..+..-......-.+....+...+.+.....|.
T Consensus       373 ls~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~-~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~  451 (728)
T KOG4535|consen  373 LSSILPEAFSNLPNDRQTLCITFLLGCNDSK-NRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRA  451 (728)
T ss_pred             HhhcCchhhcCCCCcchhhhHHHHhcccchH-HHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHH
Confidence            7777532211100000000111122222233 455666666666655443222122222233566666777777889999


Q ss_pred             HHHHHHHHhcCC---CCHH---HHHHHHHcCChHHHHhhcc--C-CCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccH
Q 013228          312 WAARAISNATFG---GTHE---QIKYLVREGCIKPLCDLLL--C-ADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQ  382 (447)
Q Consensus       312 ~a~~aL~~l~~~---~~~~---~~~~l~~~~~l~~L~~ll~--~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~  382 (447)
                      +++|+++|++..   +.|.   ....+.- -.+..+.+.-.  + .+.+++..+.++|.++...-....+.        .
T Consensus       452 KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~--------~  522 (728)
T KOG4535|consen  452 KAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKP--------T  522 (728)
T ss_pred             HHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhc--------c
Confidence            999999999751   1111   2222211 12333333221  2 23478889999999998765432211        0


Q ss_pred             HHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 013228          383 YAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWCG  421 (447)
Q Consensus       383 ~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  421 (447)
                      +...++ ....+.+....-..+-.|+=.|..++.++|..
T Consensus       523 ~~e~~~-~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn  560 (728)
T KOG4535|consen  523 FAEIIE-ESIQALISTVLTEAAMKVRWNACYAMGNLFKN  560 (728)
T ss_pred             HHHHHH-HHHHhcccceecccccccchHHHHHHHHhhcC
Confidence            122222 22222222223344566777778888887754

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.63  E-value=0.043  Score=54.32  Aligned_cols=168  Identities=18%  Similarity=0.184  Sum_probs=128.3

Q ss_pred             hcCCCCHHHHHHHHH-HHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCH
Q 013228           48 LMREDYPQLQFEAAW-ALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEAL  126 (447)
Q Consensus        48 l~~~~~~~v~~~a~~-~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l  126 (447)
                      +.+.+ +..|..|++ ++..++.+.+ ...      ..+-+++...+.+.++++-+-.-|.+++...|.  ..+.   ++
T Consensus        28 l~s~n-~~~kidAmK~iIa~M~~G~d-mss------Lf~dViK~~~trd~ElKrL~ylYl~~yak~~P~--~~lL---av   94 (757)
T COG5096          28 LESSN-DYKKIDAMKKIIAQMSLGED-MSS------LFPDVIKNVATRDVELKRLLYLYLERYAKLKPE--LALL---AV   94 (757)
T ss_pred             ccccC-hHHHHHHHHHHHHHHhcCCC-hHH------HHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHH--HHHH---HH
Confidence            55666 566666664 6666776544 222      345567766688999999999999999887773  2332   36


Q ss_pred             HHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHH
Q 013228          127 IPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIE  206 (447)
Q Consensus       127 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~  206 (447)
                      ..+..-+ .++++.+|..|+.+++.+=      .......+++.+.+++.++++.||..|+-++.++-+.+.+   ...+
T Consensus        95 Nti~kDl-~d~N~~iR~~AlR~ls~l~------~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~---l~~~  164 (757)
T COG5096          95 NTIQKDL-QDPNEEIRGFALRTLSLLR------VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD---LYHE  164 (757)
T ss_pred             HHHHhhc-cCCCHHHHHHHHHHHHhcC------hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh---hhhc
Confidence            6777777 7889999999999887653      3345577889999999999999999999999999866544   3456


Q ss_pred             hCcHHHHHHhcCCCCchhHhHHHHHHHHhhcC
Q 013228          207 AGVCPRLVELLGHPSPSVLTRALQTVVNIAAG  238 (447)
Q Consensus       207 ~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~  238 (447)
                      .|....+..++.+.++.+...|+.++..+...
T Consensus       165 ~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         165 LGLIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             ccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            68888899999999999999999999887643

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.62  E-value=0.0011  Score=64.28  Aligned_cols=243  Identities=14%  Similarity=0.061  Sum_probs=163.3

Q ss_pred             CCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHH-HhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHH
Q 013228           69 SGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALG-NVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATW  147 (447)
Q Consensus        69 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~-~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~  147 (447)
                      .....-+...++.|+...|+.+.....+.-+.....+|. .+......      ....++++...+.++....-...++.
T Consensus       491 A~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~------~~~v~~~~~s~~~~d~~~~en~E~L~  564 (748)
T KOG4151|consen  491 AKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER------SYEVVKPLDSALHNDEKGLENFEALE  564 (748)
T ss_pred             hhhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc------hhhhhhhhcchhhhhHHHHHHHHHHH
Confidence            335666777888999999999998888888888777877 33322211      12345666666522222222334888


Q ss_pred             HHHHhcCCCCCCChhhH-hhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHhcCCCCchhH
Q 013228          148 TLSNFCAGKPKPIFDQV-RPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEA-GVCPRLVELLGHPSPSVL  225 (447)
Q Consensus       148 ~L~~l~~~~~~~~~~~~-~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~-~~~~~L~~lL~~~~~~v~  225 (447)
                      ++.||+..+........ .-.++.+-.++...++..+..++.++.||..++.-....+.+. ..++.....+........
T Consensus       565 altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~  644 (748)
T KOG4151|consen  565 ALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFE  644 (748)
T ss_pred             HhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHh
Confidence            99999887744444443 4455666777888899999999999999997766555555553 445555556666666677


Q ss_pred             hHHHHHHHHhhcCChhhHH-HHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc
Q 013228          226 TRALQTVVNIAAGDDFQTQ-CIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQN  304 (447)
Q Consensus       226 ~~a~~~l~~l~~~~~~~~~-~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~  304 (447)
                      ..++.++..++......+. ..-...+...+..++.+. +.+++......+.|+.....+....++....++.+...-.-
T Consensus       645 lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~-~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~  723 (748)
T KOG4151|consen  645 LAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDE-DDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKL  723 (748)
T ss_pred             hhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc-hhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence            7777777766554444433 333346788899999999 99999999999999766666777777777777766665544


Q ss_pred             CchhHHHHHHHHHH
Q 013228          305 AEFDIKNWAARAIS  318 (447)
Q Consensus       305 ~~~~v~~~a~~aL~  318 (447)
                      .....++.+..+|.
T Consensus       724 ~~a~~~~~~~~~l~  737 (748)
T KOG4151|consen  724 NRAPKREDAAPCLS  737 (748)
T ss_pred             hhhhhhhhhhhHHH
Confidence            44444444544443

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.62  E-value=0.048  Score=49.24  Aligned_cols=225  Identities=10%  Similarity=0.105  Sum_probs=153.9

Q ss_pred             hhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHH-----HHHHHHh--CcHHHHHHhcCCCCchhHhHHHHHHHHhhc
Q 013228          165 RPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDE-----IQAVIEA--GVCPRLVELLGHPSPSVLTRALQTVVNIAA  237 (447)
Q Consensus       165 ~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~-----~~~~~~~--~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~  237 (447)
                      .+.+..|+..|..-+-+.+..+.....++.....+.     ...+...  .++..|+..-  +++++...+...|..++.
T Consensus        75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~mlRec~k  152 (335)
T PF08569_consen   75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDMLRECIK  152 (335)
T ss_dssp             HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHHHHHTT
T ss_pred             hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHHHHHHh
Confidence            578888999999999999999999999988653221     2222221  2333443333  355565666666665555


Q ss_pred             CChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcC---ChHHHHHHHhcCchhHHHHHH
Q 013228          238 GDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAG---LIGPLVNLLQNAEFDIKNWAA  314 (447)
Q Consensus       238 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~---~~~~L~~~l~~~~~~v~~~a~  314 (447)
                       .+...+.++....+..+.+.+..+ +-++...|..++..+....+.....++..+   ++.....++.++++-+++.++
T Consensus       153 -~e~l~~~iL~~~~f~~ff~~~~~~-~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqsl  230 (335)
T PF08569_consen  153 -HESLAKIILYSECFWKFFKYVQLP-NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSL  230 (335)
T ss_dssp             -SHHHHHHHHTSGGGGGHHHHTTSS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHH
T ss_pred             -hHHHHHHHhCcHHHHHHHHHhcCC-ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhH
Confidence             556677888888888899999999 999999999999998877777666766543   567788888899999999999


Q ss_pred             HHHHHhcCCC-CHHH-HHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHH--h
Q 013228          315 RAISNATFGG-THEQ-IKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEE--A  390 (447)
Q Consensus       315 ~aL~~l~~~~-~~~~-~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~--~  390 (447)
                      ..|+.+.... +... ..++.+..-+..++.+|.+....++..|..++.-++.+..+..          ++..++..  .
T Consensus       231 kLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~----------~I~~iL~~Nr~  300 (335)
T PF08569_consen  231 KLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPP----------PIVDILIKNRE  300 (335)
T ss_dssp             HHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BH----------HHHHHHHHTHH
T ss_pred             HHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCCh----------HHHHHHHHHHH
Confidence            9999998742 2222 2344445568889999999999999999999998887765432          34555542  3


Q ss_pred             chHHHHHHHhcCC
Q 013228          391 EGLEKIENLRSHD  403 (447)
Q Consensus       391 ~~~~~l~~l~~~~  403 (447)
                      ..++.+.++....
T Consensus       301 kLl~fl~~f~~~~  313 (335)
T PF08569_consen  301 KLLRFLKDFHTDR  313 (335)
T ss_dssp             HHHHHHHTTTTT-
T ss_pred             HHHHHHHhCCCCC
Confidence            4455566655444

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=97.60  E-value=0.038  Score=52.88  Aligned_cols=296  Identities=13%  Similarity=0.095  Sum_probs=151.4

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 013228           42 PRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVL  121 (447)
Q Consensus        42 ~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~  121 (447)
                      ..++...+ ++ +..+..|+..+.......|+..+.     ++..++.+.++.+..||.+|++.|..+|.+.+.....+ 
T Consensus        26 ~~il~~~k-g~-~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-   97 (556)
T PF05918_consen   26 KEILDGVK-GS-PKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-   97 (556)
T ss_dssp             HHHHHGGG-S--HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-
T ss_pred             HHHHHHcc-CC-HHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-
Confidence            34444444 45 799999999999999988887664     56789999999999999999999999998876554443 


Q ss_pred             hcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhc---cCChhHHHHHHHHHHHhcc-CC
Q 013228          122 SEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVH---SNDKEVMTDACRALFYLSE-GT  197 (447)
Q Consensus       122 ~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~---~~~~~v~~~al~~l~~l~~-~~  197 (447)
                          ...|+++| ...+..-...+-.+|..+...++       .+.+..+..-+.   ++++.+++.++..|..-.. -.
T Consensus        98 ----aDvL~QlL-~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~  165 (556)
T PF05918_consen   98 ----ADVLVQLL-QTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLK  165 (556)
T ss_dssp             ----HHHHHHHT-T---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-
T ss_pred             ----HHHHHHHH-hcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCc
Confidence                56788888 55555555555556655554321       344444554444   6788899999988754332 11


Q ss_pred             cHHHH--HHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcC----ChhhHHHHHhcCChHHHHHhh------ccCCch
Q 013228          198 NDEIQ--AVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG----DDFQTQCIINCGALPYLLGLL------IHNHKK  265 (447)
Q Consensus       198 ~~~~~--~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~----~~~~~~~~~~~~~l~~l~~~l------~~~~~~  265 (447)
                      .+...  .=.+.-++..+.+.|.+-...--...+.+|..+-.+    .....+.++     +.+.+..      ... +.
T Consensus       166 ~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv-----~ii~eQa~Ld~~f~~s-D~  239 (556)
T PF05918_consen  166 PELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELV-----DIIEEQADLDQPFDPS-DP  239 (556)
T ss_dssp             TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHH-----HHHHHHHTTTS---SS-SH
T ss_pred             HHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHH-----HHHHHHhccCCCCCCc-CH
Confidence            11111  112223455666777664443334445555555441    233333332     2333322      222 34


Q ss_pred             hHHHHHHHHHHH-H---hc--CCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChH
Q 013228          266 SIKTDACWTISN-I---TA--GNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIK  339 (447)
Q Consensus       266 ~v~~~a~~~l~n-l---~~--~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~  339 (447)
                      +.......|+.. +   +.  .+.....++.+. ++|.+-.+    +.+.+...+.++..++..........+++ -++.
T Consensus       240 e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~k-vlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d~~~~L~-~i~~  313 (556)
T PF05918_consen  240 ESIDRLISCLRQALPFFSRGVSSSKFVNYMCEK-VLPKLSDL----PEDRKLDLLKLLAELSPFCGAQDARQLLP-SIFQ  313 (556)
T ss_dssp             HHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHH-TCCCTT---------HHHHHHHHHHHHHTT----THHHHHH-HHHH
T ss_pred             HHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHH-hcCChhhC----ChHHHHHHHHHHHHHcCCCCcccHHHHHH-HHHH
Confidence            444434333332 1   11  233444444443 77755555    45667778888888877654322332221 1334


Q ss_pred             HHHhhccCC--CH----HHHHHHHHHHHHHHHhhhh
Q 013228          340 PLCDLLLCA--DP----EIVTVFLKGLEKILKVGEA  369 (447)
Q Consensus       340 ~L~~ll~~~--~~----~~~~~a~~~l~~l~~~~~~  369 (447)
                      .|..++-..  .+    ..++..+.++..|....+.
T Consensus       314 ~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~  349 (556)
T PF05918_consen  314 LLKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSPN  349 (556)
T ss_dssp             HHHTTS----------HHHHHHHHHHHHHHHTT-TH
T ss_pred             HHHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCcc
Confidence            444444332  33    3455666666677665444

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.57  E-value=0.016  Score=58.97  Aligned_cols=242  Identities=12%  Similarity=0.072  Sum_probs=148.8

Q ss_pred             HHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC--CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh-hHHHHHH
Q 013228           45 VEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH--GAVPIFVKLLASPSDDIREQAVCALGNVAADSA-RCRDLVL  121 (447)
Q Consensus        45 ~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~-~~~~~~~  121 (447)
                      .....+.++..+|..+.+.|..++.. +.......+.  .+.+.|..-+++.+...+...+.+|..|....+ ...+.+.
T Consensus       659 ~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~  737 (1176)
T KOG1248|consen  659 DPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP  737 (1176)
T ss_pred             hHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            33344443389999999999999984 2222111111  233445555556677778788888887775444 2222222


Q ss_pred             hcCCHHHHHHHhccccchhHHHHHHHHHHHhc--CCC----CCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 013228          122 SEEALIPLLTQLNKHAKLSMLRIATWTLSNFC--AGK----PKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSE  195 (447)
Q Consensus       122 ~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~--~~~----~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~  195 (447)
                      .  .++.++-.+ ++.+...++.+..+|..++  ...    .++....+...++.+...+-.....+....+-++..+..
T Consensus       738 k--~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~  814 (1176)
T KOG1248|consen  738 K--LIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ  814 (1176)
T ss_pred             H--HHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence            1  244444444 6667788888888888887  221    222244456666666665544444444443556665553


Q ss_pred             CCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHH
Q 013228          196 GTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTI  275 (447)
Q Consensus       196 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l  275 (447)
                      ...+....-.-.++++.+..+|.+.+..++..|+..+..++..-+...-......+++.+..+++.. ...+|..+-..+
T Consensus       815 e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~Ll  893 (1176)
T KOG1248|consen  815 EFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLLL  893 (1176)
T ss_pred             HHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHHH
Confidence            3222212222235677888889999999999999999999987765433333335778888877776 788888888888


Q ss_pred             HHHhc-CCHHHHHHHHH
Q 013228          276 SNITA-GNSEHIQAVID  291 (447)
Q Consensus       276 ~nl~~-~~~~~~~~l~~  291 (447)
                      -.++. .+.+..+.++.
T Consensus       894 ekLirkfg~~eLe~~~p  910 (1176)
T KOG1248|consen  894 EKLIRKFGAEELESFLP  910 (1176)
T ss_pred             HHHHHHhCHHHHHhhCH
Confidence            87776 34455555554

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.53  E-value=0.005  Score=48.18  Aligned_cols=130  Identities=15%  Similarity=0.120  Sum_probs=101.5

Q ss_pred             HHHHHhCcHHHHHHhcCCCC------chhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCC-chhHHHHHHHH
Q 013228          202 QAVIEAGVCPRLVELLGHPS------PSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNH-KKSIKTDACWT  274 (447)
Q Consensus       202 ~~~~~~~~~~~L~~lL~~~~------~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~-~~~v~~~a~~~  274 (447)
                      ..++..+++..|++.+.++.      ..+...++.++..|..+.. .....+...++..+...+.... +..+...+...
T Consensus         5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~-vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI   83 (160)
T PF11841_consen    5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGI-VSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI   83 (160)
T ss_pred             HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCc-CchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence            45788899999999997755      3666778888888877543 2334555667778888887553 68889999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHH
Q 013228          275 ISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYL  332 (447)
Q Consensus       275 l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l  332 (447)
                      |-+++..++...+.+.+.=-++.|+..++..+++++.+|...+..+..+.++..++.+
T Consensus        84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i  141 (160)
T PF11841_consen   84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEI  141 (160)
T ss_pred             HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence            9999988877666666666799999999999999999999988888887766655543

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.52  E-value=0.045  Score=51.73  Aligned_cols=300  Identities=16%  Similarity=0.104  Sum_probs=166.7

Q ss_pred             CHHHHHHHHHHHHHHHccCCCCc----hhhhhccCCHHHHHHhhcCC----C--CHHHHHHHHHHHHHHcCCChh-hHHH
Q 013228            9 DNNMQLEATTHIRKLLSNARSAP----TEEVIPFGVVPRFVEFLMRE----D--YPQLQFEAAWALKNIVSGTSE-DTKV   77 (447)
Q Consensus         9 ~~~~~~~a~~~l~~l~~~~~~~~----~~~~~~~~~v~~L~~ll~~~----~--~~~v~~~a~~~L~~l~~~~~~-~~~~   77 (447)
                      +.+.....+..+..+........    .....+..+++.+.++....    .  ++.+...+...+..+...-+. ....
T Consensus        56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~  135 (415)
T PF12460_consen   56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE  135 (415)
T ss_pred             ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            45566667777777766532222    22333445778887765322    1  145566666666666553332 2333


Q ss_pred             HHhCCChHHHHHhhC----------CCC--HHHHHHHHHHH-HHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHH
Q 013228           78 VIDHGAVPIFVKLLA----------SPS--DDIREQAVCAL-GNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRI  144 (447)
Q Consensus        78 ~~~~~~i~~L~~ll~----------~~~--~~i~~~a~~~L-~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~  144 (447)
                      +.     ..+..+..          ..+  ..........+ +-++.-++.+.-. .....+..++.......++..+..
T Consensus       136 ~~-----~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~  209 (415)
T PF12460_consen  136 IL-----DELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP-DLEELLQSLLNLALSSEDEFSRLA  209 (415)
T ss_pred             HH-----HHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCcc-CHHHHHHHHHHHHHcCCChHHHHH
Confidence            32     22333221          111  11122222222 2223222222100 111246677777766667788888


Q ss_pred             HHHHHHHhcCCCCCCChhhHhhhHHHHHHhh-ccCChhHHHHH----HHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC
Q 013228          145 ATWTLSNFCAGKPKPIFDQVRPALPALAQLV-HSNDKEVMTDA----CRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH  219 (447)
Q Consensus       145 a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~v~~~a----l~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~  219 (447)
                      ++.+++.+...-+...  ....++..+...+ ...++..+..+    .|...-+.........     ..+..|+.++.+
T Consensus       210 ~~~~la~LvNK~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~lL~~  282 (415)
T PF12460_consen  210 ALQLLASLVNKWPDDD--DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLELLSS  282 (415)
T ss_pred             HHHHHHHHHcCCCChh--hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHHhCC
Confidence            8898888886532222  3345555555544 33333333333    4444444433322222     346778888876


Q ss_pred             CCchhHhHHHHHHHHhhcCCh--------hhHHHHHhc----CChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHH
Q 013228          220 PSPSVLTRALQTVVNIAAGDD--------FQTQCIINC----GALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQ  287 (447)
Q Consensus       220 ~~~~v~~~a~~~l~~l~~~~~--------~~~~~~~~~----~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~  287 (447)
                        +.+...+.+.++-+....+        ...+.+.+.    ..+|.+++..+.. +...|.....+|+++..+-|..+-
T Consensus       283 --~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~~k~~yL~ALs~ll~~vP~~vl  359 (415)
T PF12460_consen  283 --PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDEIKSNYLTALSHLLKNVPKSVL  359 (415)
T ss_pred             --hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-ChhhHHHHHHHHHHHHhhCCHHHH
Confidence              6677888888888876522        122223332    3566777777766 666888888999999886554331


Q ss_pred             HHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCC
Q 013228          288 AVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGG  324 (447)
Q Consensus       288 ~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~  324 (447)
                      .---..++|.+++.|..++.+++..++.+|..+....
T Consensus       360 ~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  360 LPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence            1111348999999999999999999999999998864

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.52  E-value=0.00099  Score=47.91  Aligned_cols=68  Identities=18%  Similarity=0.296  Sum_probs=57.9

Q ss_pred             hHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhc-cCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013228          224 VLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLI-HNHKKSIKTDACWTISNITAGNSEHIQAVID  291 (447)
Q Consensus       224 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~-~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~  291 (447)
                      ++...+++|+|++..++.....+.+.|+++.++.... +..++.+|+.|.+++.|++.+++++.+.+.+
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            4667889999999999999999999999999988764 3338999999999999999999887666554

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.50  E-value=0.032  Score=55.22  Aligned_cols=238  Identities=16%  Similarity=0.140  Sum_probs=152.0

Q ss_pred             HhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCChhHHHHHHhcC
Q 013228           46 EFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLA-SPSDDIREQAVCALGNVAADSARCRDLVLSEE  124 (447)
Q Consensus        46 ~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~  124 (447)
                      ..+.....|.....+.+++...+.....+...+ . -++...+..+. +..+.++-.++++++..|.... +...  ..+
T Consensus       456 ~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~-~-~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~v-l~~~--~p~  530 (1005)
T KOG2274|consen  456 NGLVYQESPFLLLRAFLTISKFSSSTVINPQLL-Q-HFLNATVNALTMDVPPPVKISAVRAFCGYCKVKV-LLSL--QPM  530 (1005)
T ss_pred             hhcccccCHHHHHHHHHHHHHHHhhhccchhHH-H-HHHHHHHHhhccCCCCchhHHHHHHHHhccCcee-cccc--chH
Confidence            334444447777799999987776322222211 1 12334444443 4567788888888888873221 1111  223


Q ss_pred             CHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhc--cCChhHHHHHHHHHHHhccCCcHHHH
Q 013228          125 ALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVH--SNDKEVMTDACRALFYLSEGTNDEIQ  202 (447)
Q Consensus       125 ~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~--~~~~~v~~~al~~l~~l~~~~~~~~~  202 (447)
                      ++..++++. ...+.++......+|+..+..+|.........+.|..+.++.  ++||.+...+-.++-.++......  
T Consensus       531 ild~L~qla-s~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~--  607 (1005)
T KOG2274|consen  531 ILDGLLQLA-SKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANY--  607 (1005)
T ss_pred             HHHHHHHHc-ccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhh--
Confidence            455566655 566678888899999999998877777777888888777643  557777776666666666422111  


Q ss_pred             HHHHhCcHHHHHHhcCCCC----chhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHH
Q 013228          203 AVIEAGVCPRLVELLGHPS----PSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNI  278 (447)
Q Consensus       203 ~~~~~~~~~~L~~lL~~~~----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl  278 (447)
                      .-.....+|.+++.|..+.    ......++..|..+.++.+.-....+-.-++|.+.++.-++.+...-..+..||..+
T Consensus       608 g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~  687 (1005)
T KOG2274|consen  608 GPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRAL  687 (1005)
T ss_pred             cchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHH
Confidence            1223357899999997765    556667788888777766543333333457778888776665888888899999988


Q ss_pred             hcCCHHHHHHHHH
Q 013228          279 TAGNSEHIQAVID  291 (447)
Q Consensus       279 ~~~~~~~~~~l~~  291 (447)
                      ...+.++....-.
T Consensus       688 Is~~~eq~~t~~~  700 (1005)
T KOG2274|consen  688 ISVTLEQLLTWHD  700 (1005)
T ss_pred             HhcCHHHHHhhcc
Confidence            8866665544433

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.47  E-value=0.0085  Score=49.16  Aligned_cols=93  Identities=20%  Similarity=0.214  Sum_probs=75.4

Q ss_pred             chhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhc
Q 013228          138 KLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELL  217 (447)
Q Consensus       138 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL  217 (447)
                      ++.++.+++.+++.|+...    .......+|.+...|+++++.||..|+.++.++...+--..    +..++..++..+
T Consensus         1 ~~~vR~n~i~~l~DL~~r~----~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~~l   72 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRY----PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV----KGQLFSRILKLL   72 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhC----cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHHHH
Confidence            4678889999999998654    23457788999999999999999999999999986543322    223447788889


Q ss_pred             CCCCchhHhHHHHHHHHhhcC
Q 013228          218 GHPSPSVLTRALQTVVNIAAG  238 (447)
Q Consensus       218 ~~~~~~v~~~a~~~l~~l~~~  238 (447)
                      .++++.++..|..++..+...
T Consensus        73 ~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   73 VDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             cCCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999875

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.47  E-value=0.00037  Score=41.28  Aligned_cols=39  Identities=41%  Similarity=0.472  Sum_probs=35.4

Q ss_pred             HHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcC
Q 013228          284 EHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATF  322 (447)
Q Consensus       284 ~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~  322 (447)
                      +....+.+.|+++.|+.++.+++++++..++++|.|++.
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            467788899999999999999999999999999999863

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.46  E-value=0.01  Score=48.67  Aligned_cols=94  Identities=17%  Similarity=0.199  Sum_probs=75.1

Q ss_pred             CchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHH
Q 013228          221 SPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVN  300 (447)
Q Consensus       221 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~  300 (447)
                      ++.+|..++.+++-++...+...+     ..++.+...|.++ ++.+|+.|+.++..|...+.--    ++..++..++.
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~   70 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDE-DPLVRKTALLVLSHLILEDMIK----VKGQLFSRILK   70 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHH
Confidence            467899999999999987765444     4678999999999 9999999999999997643110    12224477788


Q ss_pred             HHhcCchhHHHHHHHHHHHhcCCC
Q 013228          301 LLQNAEFDIKNWAARAISNATFGG  324 (447)
Q Consensus       301 ~l~~~~~~v~~~a~~aL~~l~~~~  324 (447)
                      ++.+++++++..|..++..+....
T Consensus        71 ~l~D~~~~Ir~~A~~~~~e~~~~~   94 (178)
T PF12717_consen   71 LLVDENPEIRSLARSFFSELLKKR   94 (178)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHhc
Confidence            888999999999999999998863

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.44  E-value=0.00083  Score=48.31  Aligned_cols=92  Identities=21%  Similarity=0.241  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCC
Q 013228          142 LRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPS  221 (447)
Q Consensus       142 ~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~  221 (447)
                      +..++.+|...+..-+.........++|.++..+.++|..||..|+.+|.|++.......-. .-..+++.|.+++.+++
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~-~f~~IF~~L~kl~~D~d   81 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP-YFNEIFDALCKLSADPD   81 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCc
Confidence            44566777777665545555566889999999999999999999999999999654332211 12367889999999999


Q ss_pred             chhHhHHHHHHHHh
Q 013228          222 PSVLTRALQTVVNI  235 (447)
Q Consensus       222 ~~v~~~a~~~l~~l  235 (447)
                      +.|+..| ..|-++
T Consensus        82 ~~Vr~~a-~~Ld~l   94 (97)
T PF12755_consen   82 ENVRSAA-ELLDRL   94 (97)
T ss_pred             hhHHHHH-HHHHHH
Confidence            9988777 444333

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.35  E-value=0.014  Score=45.82  Aligned_cols=127  Identities=12%  Similarity=0.157  Sum_probs=97.6

Q ss_pred             HHHHHhcCChHHHHHhhccCCc-----hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--chhHHHHHHH
Q 013228          243 TQCIINCGALPYLLGLLIHNHK-----KSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNA--EFDIKNWAAR  315 (447)
Q Consensus       243 ~~~~~~~~~l~~l~~~l~~~~~-----~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~--~~~v~~~a~~  315 (447)
                      ...++..+++..|++++.++..     ......+..++..+..++--.+ ..+...++.++..+++..  +..+.+.+..
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsW-d~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa   82 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSW-DTLSDSFIKKIASYVNSSAMDASILQRSLA   82 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCch-hhccHHHHHHHHHHHccccccchHHHHHHH
Confidence            4568889999999999988732     3555666677777766542223 445556888888888843  6889999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhh
Q 013228          316 AISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEK  371 (447)
Q Consensus       316 aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~  371 (447)
                      .|-++..+ ++.....+.+.=.++.|+..|...+++++..++..+..++...+..+
T Consensus        83 ILEs~Vl~-S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~  137 (160)
T PF11841_consen   83 ILESIVLN-SPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSK  137 (160)
T ss_pred             HHHHHHhC-CHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHH
Confidence            99999986 45555666666679999999999999999999999999998776654

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.32  E-value=0.31  Score=51.49  Aligned_cols=393  Identities=8%  Similarity=0.002  Sum_probs=195.9

Q ss_pred             cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228            2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH   81 (447)
Q Consensus         2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (447)
                      +..+..+-..+|-.|+++|..+....+.-.....++.++..    -+.+.. ..||+.|+..++...-..++....+.  
T Consensus       822 l~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~----R~~Dss-asVREAaldLvGrfvl~~~e~~~qyY--  894 (1692)
T KOG1020|consen  822 LSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHG----RLNDSS-ASVREAALDLVGRFVLSIPELIFQYY--  894 (1692)
T ss_pred             HHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHH----hhccch-hHHHHHHHHHHhhhhhccHHHHHHHH--
Confidence            45677777899999999999999874222222223333322    234455 69999999999987766666655444  


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcccc--chhHHHHHHHHHHHhcCCCCCC
Q 013228           82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHA--KLSMLRIATWTLSNFCAGKPKP  159 (447)
Q Consensus        82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~--~~~~~~~a~~~L~~l~~~~~~~  159 (447)
                         ..+..-+.++...+|..+++.+..+|...|.+...      +.....++.+..  ...++.-++.++..+...+...
T Consensus       895 ---~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i------~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~  965 (1692)
T KOG1020|consen  895 ---DQIIERILDTGVSVRKRVIKILRDICEETPDFSKI------VDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPE  965 (1692)
T ss_pred             ---HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH------HHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCc
Confidence               34566666778899999999999999877765322      334445554333  3348888999999988776222


Q ss_pred             --ChhhHhhhHH-------HHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHh---CcHHHHHHhc----------
Q 013228          160 --IFDQVRPALP-------ALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEA---GVCPRLVELL----------  217 (447)
Q Consensus       160 --~~~~~~~~l~-------~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~---~~~~~L~~lL----------  217 (447)
                        .......-++       .-+.+.....+.+....+..=.....  ....+.+...   ..+..+...+          
T Consensus       966 ~~d~~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~--~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~ 1043 (1692)
T KOG1020|consen  966 VNDQPAKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTM--KESVKPVALAKVTHVLNLLTHCLVEKISEVESD 1043 (1692)
T ss_pred             ccccHHHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhh--hhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhH
Confidence              1111111111       11122223334443333322211110  0001111111   1122222222          


Q ss_pred             --CCCCchhH-hHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccC----CchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 013228          218 --GHPSPSVL-TRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHN----HKKSIKTDACWTISNITAGNSEHIQAVI  290 (447)
Q Consensus       218 --~~~~~~v~-~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~----~~~~v~~~a~~~l~nl~~~~~~~~~~l~  290 (447)
                        ..++..++ ...+.+|.-++...|..    +....+..|...|.+.    ....+..+.+.++-...---+.--+.+.
T Consensus      1044 ~~~~~~~~~~~~~~lstL~~FskirP~L----lt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL 1119 (1692)
T KOG1020|consen 1044 DMNEEESEVRLLAYLSTLFVFSKIRPQL----LTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFL 1119 (1692)
T ss_pred             hhhcccchhHHHHHHHHHHHHHhcCchh----ccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHH
Confidence              12223333 34455666666655522    2223344455555543    1233334444444333221101011111


Q ss_pred             HcCChHHHHHHHhcCchhHHHHHHHHHHHhcCC--CCHHHHHHHHH--cCChHHHHhhccCC----CHHHHHHHHHHHHH
Q 013228          291 DAGLIGPLVNLLQNAEFDIKNWAARAISNATFG--GTHEQIKYLVR--EGCIKPLCDLLLCA----DPEIVTVFLKGLEK  362 (447)
Q Consensus       291 ~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~--~~~~~~~~l~~--~~~l~~L~~ll~~~----~~~~~~~a~~~l~~  362 (447)
                      . .+=+.|+.++-.........|..+++.++..  .+......+..  .+.++.+-.--.+.    ........+.+++-
T Consensus      1120 ~-sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~ 1198 (1692)
T KOG1020|consen 1120 A-SLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGL 1198 (1692)
T ss_pred             H-HHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHH
Confidence            1 1333455555545556666777777777763  22222222211  01122221111111    11334455666666


Q ss_pred             HHHhhhhhhhhhhhcccccH-HHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 013228          363 ILKVGEAEKNMDIAIGDVNQ-YAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWC  420 (447)
Q Consensus       363 l~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  420 (447)
                      +++++........  +..+- ... ....+.+..|.-+..+.+.+++.+|...+..+|-
T Consensus      1199 l~Ryfdf~~~~~~--g~~~~~~~~-~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci 1254 (1692)
T KOG1020|consen 1199 LSRYFDFPKPSND--GKTFLQEGE-TLKEKVLILLMYFSKDKDGELRRKALINLGFICI 1254 (1692)
T ss_pred             HHHhccCCCccCC--Cccchhhhh-hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence            6664433221110  11111 122 2236667777777777788899998888887663

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=97.31  E-value=0.25  Score=50.31  Aligned_cols=337  Identities=13%  Similarity=0.122  Sum_probs=180.7

Q ss_pred             cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228            2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH   81 (447)
Q Consensus         2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (447)
                      .+.+++.|..++=.|+..+.++++..+....+.     ++...+.++.-.+++..-..++-+|+.++...--....+.  
T Consensus       347 ls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~-----vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~--  419 (1133)
T KOG1943|consen  347 LSALSDTDTVVRWSAAKGLGRVTSRLPPELADQ-----VIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLE--  419 (1133)
T ss_pred             HHhccCCcchhhHHHHHHHHHHHccCcHHHHHH-----HHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHH--
Confidence            457888899999999999999998753222333     4555666555444356667899999999873222111111  


Q ss_pred             CChHHHHHhhCC--------CCHHHHHHHHHHHHHhhcCChhH--HHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHH
Q 013228           82 GAVPIFVKLLAS--------PSDDIREQAVCALGNVAADSARC--RDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSN  151 (447)
Q Consensus        82 ~~i~~L~~ll~~--------~~~~i~~~a~~~L~~l~~~~~~~--~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~  151 (447)
                      .+++.++..+.-        ....+|..|+.+++.+++.....  +. +. ......++..-.-+.+...++.|..++..
T Consensus       420 dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p-~l-~~L~s~LL~~AlFDrevncRRAAsAAlqE  497 (1133)
T KOG1943|consen  420 DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP-VL-QSLASALLIVALFDREVNCRRAASAALQE  497 (1133)
T ss_pred             HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH-HH-HHHHHHHHHHHhcCchhhHhHHHHHHHHH
Confidence            345556555532        34689999999999998543321  11 10 11122222222256677889998888877


Q ss_pred             hcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHh-cCCCCchhHhHHHH
Q 013228          152 FCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVEL-LGHPSPSVLTRALQ  230 (447)
Q Consensus       152 l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~l-L~~~~~~v~~~a~~  230 (447)
                      .....++..     .+++ |+...+.-....+.++-..++.-....+.....     ++..++.. +.+=+..++..+.+
T Consensus       498 ~VGR~~n~p-----~Gi~-Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~-----~f~~L~t~Kv~HWd~~irelaa~  566 (1133)
T KOG1943|consen  498 NVGRQGNFP-----HGIS-LISTIDYFSVTNRSNCYLDLCVSIAEFSGYREP-----VFNHLLTKKVCHWDVKIRELAAY  566 (1133)
T ss_pred             HhccCCCCC-----Cchh-hhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHH-----HHHHHHhcccccccHHHHHHHHH
Confidence            665432221     1222 111111111222333322222211112222221     22222222 45567889999999


Q ss_pred             HHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHH---HHHHHHH---cC---ChHHHHHH
Q 013228          231 TVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSE---HIQAVID---AG---LIGPLVNL  301 (447)
Q Consensus       231 ~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~---~~~~l~~---~~---~~~~L~~~  301 (447)
                      +|.+++...++    ....+.++.+++...++ +...+.-...+.+.+......   ....+.+   .+   +++.+...
T Consensus       567 aL~~Ls~~~pk----~~a~~~L~~lld~~ls~-~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~  641 (1133)
T KOG1943|consen  567 ALHKLSLTEPK----YLADYVLPPLLDSTLSK-DASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDR  641 (1133)
T ss_pred             HHHHHHHhhHH----hhcccchhhhhhhhcCC-ChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHH
Confidence            99998876553    33446788888888777 777777666555555432111   1111111   12   23333332


Q ss_pred             H-hcC-chhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 013228          302 L-QNA-EFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILK  365 (447)
Q Consensus       302 l-~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~  365 (447)
                      . ..+ ..-.+...+..+.++.....+ ....+.-.+.-..+.+.+.+.+ .++..+.+++..++.
T Consensus       642 ~~~rg~~~lmr~~~~~~Ie~~s~s~~~-~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s  705 (1133)
T KOG1943|consen  642 YFYRGQGTLMRQATLKFIEQLSLSKDR-LFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVS  705 (1133)
T ss_pred             HhccchHHHHHHHHHHHHHHhhhccch-hHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHH
Confidence            2 222 245566667777777765432 2222222233444444553444 778888888877765

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.29  E-value=0.0084  Score=60.81  Aligned_cols=149  Identities=16%  Similarity=0.145  Sum_probs=118.8

Q ss_pred             hhhHhhhHHHHHHhhc----cCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcC-CCCchhHhHHHHHHHHh
Q 013228          161 FDQVRPALPALAQLVH----SNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLG-HPSPSVLTRALQTVVNI  235 (447)
Q Consensus       161 ~~~~~~~l~~l~~ll~----~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~v~~~a~~~l~~l  235 (447)
                      ......+.|.++...+    .++|+++..|--+++.+..-+....    + .-++.|+..+. ++++.+|..+.-+++-+
T Consensus       914 k~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fc----e-s~l~llftimeksp~p~IRsN~VvalgDl  988 (1251)
T KOG0414|consen  914 KSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFC----E-SHLPLLFTIMEKSPSPRIRSNLVVALGDL  988 (1251)
T ss_pred             HHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHH----H-HHHHHHHHHHhcCCCceeeecchheccch
Confidence            3344667888888885    4579999999999999886554332    2 34788999996 79999999999999999


Q ss_pred             hcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHH
Q 013228          236 AAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAAR  315 (447)
Q Consensus       236 ~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~  315 (447)
                      +...+...+     ..-+.|...|.+. ++.+|+.|..++++|...+     .+--.|.+..+..++.+++..++..|-.
T Consensus       989 av~fpnlie-----~~T~~Ly~rL~D~-~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~ 1057 (1251)
T KOG0414|consen  989 AVRFPNLIE-----PWTEHLYRRLRDE-SPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKS 1057 (1251)
T ss_pred             hhhcccccc-----hhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHH
Confidence            876664443     3556889999999 9999999999999997643     2334789999999999999999999998


Q ss_pred             HHHHhcCCCC
Q 013228          316 AISNATFGGT  325 (447)
Q Consensus       316 aL~~l~~~~~  325 (447)
                      .+..++..++
T Consensus      1058 FF~Els~k~n 1067 (1251)
T KOG0414|consen 1058 FFKELSSKGN 1067 (1251)
T ss_pred             HHHHhhhccc
Confidence            8888887664

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=97.27  E-value=0.027  Score=47.02  Aligned_cols=145  Identities=13%  Similarity=0.145  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcC----CCCHHHHHHHHHHHHHHcC-CChhhHHHHHhCCCh
Q 013228           10 NNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMR----EDYPQLQFEAAWALKNIVS-GTSEDTKVVIDHGAV   84 (447)
Q Consensus        10 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~----~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~~i   84 (447)
                      ..-...|+..|..++++  ++.+..+.++.+--.+-.+|..    ...+-+|..++.+++.+.. ++.+....+...+++
T Consensus        93 snRVcnaL~LlQcvASH--pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIV  170 (293)
T KOG3036|consen   93 SNRVCNALALLQCVASH--PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIV  170 (293)
T ss_pred             cchHHHHHHHHHHHhcC--cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhH
Confidence            34456777778888887  7888888887665555555543    2347889999999999987 345566778888999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHH------HH-hcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCC
Q 013228           85 PIFVKLLASPSDDIREQAVCALGNVAADSARCRDL------VL-SEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK  156 (447)
Q Consensus        85 ~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~------~~-~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  156 (447)
                      +..++.++.+++..+..|+.++..+..++....-.      +. -...+..++..+.+.++..+..++..+...|+.+.
T Consensus       171 PlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp  249 (293)
T KOG3036|consen  171 PLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP  249 (293)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence            99999999999999999999999988776543221      11 12235555666656777888888888888888764

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=97.20  E-value=0.034  Score=47.36  Aligned_cols=187  Identities=12%  Similarity=0.157  Sum_probs=119.7

Q ss_pred             ChhHHHHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHhc-------CCCC--chh---HhHHHHHHHHhhcCChhhHHH
Q 013228          179 DKEVMTDACRALFYLSEGTNDEIQAVIEA-GVCPRLVELL-------GHPS--PSV---LTRALQTVVNIAAGDDFQTQC  245 (447)
Q Consensus       179 ~~~v~~~al~~l~~l~~~~~~~~~~~~~~-~~~~~L~~lL-------~~~~--~~v---~~~a~~~l~~l~~~~~~~~~~  245 (447)
                      +++.++.|+.-|+.--+..++..-.+..+ |.+..|++=+       ..+.  ...   .-.|+..+..++. +++.+..
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~   86 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMP   86 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHH
Confidence            56778888877776655544443334443 6666554433       2222  111   2234444455555 5567778


Q ss_pred             HHhcCChHHHHHhhccCC----chhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHh
Q 013228          246 IINCGALPYLLGLLIHNH----KKSIKTDACWTISNITA-GNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNA  320 (447)
Q Consensus       246 ~~~~~~l~~l~~~l~~~~----~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l  320 (447)
                      ++++++.-.|..+|....    -+.+|-.+.++++.+.. ++++.+..+.+.+++|..++.++.++.-.+..|...+..+
T Consensus        87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI  166 (262)
T PF04078_consen   87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI  166 (262)
T ss_dssp             HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            999999888888886541    35678889999999987 5778889999999999999999999988888899998888


Q ss_pred             cCCCCHHHHHHHHH--------cCChHHHHh-hccCCCHHHHHHHHHHHHHHHHhhh
Q 013228          321 TFGGTHEQIKYLVR--------EGCIKPLCD-LLLCADPEIVTVFLKGLEKILKVGE  368 (447)
Q Consensus       321 ~~~~~~~~~~~l~~--------~~~l~~L~~-ll~~~~~~~~~~a~~~l~~l~~~~~  368 (447)
                      ...  .....++..        ..++..++. +.+..++.+.+.++.+..++.++..
T Consensus       167 L~d--d~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr  221 (262)
T PF04078_consen  167 LLD--DVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR  221 (262)
T ss_dssp             HHS--HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTT
T ss_pred             Hcc--hhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHH
Confidence            773  333333221        113333333 3456778888888888888876544

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.19  E-value=0.079  Score=51.19  Aligned_cols=129  Identities=17%  Similarity=0.169  Sum_probs=89.2

Q ss_pred             hHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC
Q 013228          140 SMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH  219 (447)
Q Consensus       140 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~  219 (447)
                      .+.+.+...+..+-..+  .....+.+.+..+++...+++..|+..++..|..++...... ...+-.++...+...+.+
T Consensus        61 RIl~fla~fv~sl~q~d--~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~ei-dd~vfn~l~e~l~~Rl~D  137 (892)
T KOG2025|consen   61 RILSFLARFVESLPQLD--KEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEI-DDDVFNKLNEKLLIRLKD  137 (892)
T ss_pred             HHHHHHHHHHHhhhccC--chhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcccccc-CHHHHHHHHHHHHHHHhc
Confidence            45555555555554332  222255777777888888999999999999999888643322 223334677888888889


Q ss_pred             CCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHH
Q 013228          220 PSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTIS  276 (447)
Q Consensus       220 ~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~  276 (447)
                      ..+.||..|+.+|+.+-....+.     +..+...+..+++...+++||+.|...+.
T Consensus       138 rep~VRiqAv~aLsrlQ~d~~de-----e~~v~n~l~~liqnDpS~EVRRaaLsnI~  189 (892)
T KOG2025|consen  138 REPNVRIQAVLALSRLQGDPKDE-----ECPVVNLLKDLIQNDPSDEVRRAALSNIS  189 (892)
T ss_pred             cCchHHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence            99999999999999886322111     12456678888887669999998865543

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.19  E-value=0.11  Score=43.98  Aligned_cols=243  Identities=17%  Similarity=0.186  Sum_probs=138.1

Q ss_pred             HHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhc
Q 013228           55 QLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLN  134 (447)
Q Consensus        55 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~  134 (447)
                      .-+..|+..|.++...           +.+..+.+...+++...+...+.+|+.....           ..++.++..+.
T Consensus        20 ~~r~rALf~Lr~l~~~-----------~~i~~i~ka~~d~s~llkhe~ay~LgQ~~~~-----------~Av~~l~~vl~   77 (289)
T KOG0567|consen   20 QNRFRALFNLRNLLGP-----------AAIKAITKAFIDDSALLKHELAYVLGQMQDE-----------DAVPVLVEVLL   77 (289)
T ss_pred             HHHHHHHHhhhccCCh-----------HHHHHHHHhcccchhhhccchhhhhhhhccc-----------hhhHHHHHHhc
Confidence            3345566666655541           1245555555555555566666666665422           24666666663


Q ss_pred             cc-cchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHH----HH-----
Q 013228          135 KH-AKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQ----AV-----  204 (447)
Q Consensus       135 ~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~----~~-----  204 (447)
                      .. ..+-++..|..+|..+..          ...++.+-+..+++...+++.+..++..+-..+.....    ..     
T Consensus        78 desq~pmvRhEAaealga~~~----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdP  147 (289)
T KOG0567|consen   78 DESQEPMVRHEAAEALGAIGD----------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDP  147 (289)
T ss_pred             ccccchHHHHHHHHHHHhhcc----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCC
Confidence            22 234455567777776652          23455555666666666666666666554421110000    00     


Q ss_pred             ---HHhCcHHHHHHhc-CCCCc-hhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHh
Q 013228          205 ---IEAGVCPRLVELL-GHPSP-SVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNIT  279 (447)
Q Consensus       205 ---~~~~~~~~L~~lL-~~~~~-~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~  279 (447)
                         ...+-+..+-..| ..+.+ --|..|++.|.|+-.  +         ..+..+.+-+..+ +.-.|.+++++++.+-
T Consensus       148 a~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~--E---------eaI~al~~~l~~~-SalfrhEvAfVfGQl~  215 (289)
T KOG0567|consen  148 APPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT--E---------EAINALIDGLADD-SALFRHEVAFVFGQLQ  215 (289)
T ss_pred             CCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--H---------HHHHHHHHhcccc-hHHHHHHHHHHHhhcc
Confidence               0001122222222 22222 223345555544321  1         1244566777777 8899999999999984


Q ss_pred             cCCHHHHHHHHHcCChHHHHHHHh--cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHH
Q 013228          280 AGNSEHIQAVIDAGLIGPLVNLLQ--NAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFL  357 (447)
Q Consensus       280 ~~~~~~~~~l~~~~~~~~L~~~l~--~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~  357 (447)
                      +.  .         .+|.|.+.|.  .+++-+|.+|+.||+.++..   +         .++.|.+++++..+-+++.|.
T Consensus       216 s~--~---------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e---~---------~~~vL~e~~~D~~~vv~esc~  272 (289)
T KOG0567|consen  216 SP--A---------AIPSLIKVLLDETEHPMVRHEAAEALGAIADE---D---------CVEVLKEYLGDEERVVRESCE  272 (289)
T ss_pred             ch--h---------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH---H---------HHHHHHHHcCCcHHHHHHHHH
Confidence            42  2         5666777766  35889999999999999752   2         477778888888888888777


Q ss_pred             HHHHHHH
Q 013228          358 KGLEKIL  364 (447)
Q Consensus       358 ~~l~~l~  364 (447)
                      -+|.-+-
T Consensus       273 valdm~e  279 (289)
T KOG0567|consen  273 VALDMLE  279 (289)
T ss_pred             HHHHHHH
Confidence            6666543

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.18  E-value=0.033  Score=54.44  Aligned_cols=220  Identities=15%  Similarity=0.104  Sum_probs=145.1

Q ss_pred             HHHHHhcCCHHHHHHHhccccchhHHHHHHHHHH-HhcCCCCCCChhhHhhhHHHHHHhhccCC-hhHHHHHHHHHHHhc
Q 013228          117 RDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLS-NFCAGKPKPIFDQVRPALPALAQLVHSND-KEVMTDACRALFYLS  194 (447)
Q Consensus       117 ~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~-~l~~~~~~~~~~~~~~~l~~l~~ll~~~~-~~v~~~al~~l~~l~  194 (447)
                      +...++.|+...++.+. ....+..+.....+|. .+...     ......+++.+...+.... ..-...++.++.|++
T Consensus       497 ~~~~Ik~~~~~aLlrl~-~~q~e~akl~~~~aL~~~i~f~-----~~~~~~v~~~~~s~~~~d~~~~en~E~L~altnLa  570 (748)
T KOG4151|consen  497 RAKKIKPGGYEALLRLG-QQQFEEAKLKWYHALAGKIDFP-----GERSYEVVKPLDSALHNDEKGLENFEALEALTNLA  570 (748)
T ss_pred             cCccccccHHHHHHHHH-HHhchHHHHHHHHHHhhhcCCC-----CCchhhhhhhhcchhhhhHHHHHHHHHHHHhhccc
Confidence            34455678888888888 4444566666666666 22111     1112344554444444332 222345788999999


Q ss_pred             cCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHh-cCChHHHHHhhccCCchhHHHHHHH
Q 013228          195 EGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIIN-CGALPYLLGLLIHNHKKSIKTDACW  273 (447)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~l~~l~~~l~~~~~~~v~~~a~~  273 (447)
                      ..++...+.+.+.-.++.+-.++..+++..+..++..+.||.-+..-....+.+ ...++.....+... +.....+++.
T Consensus       571 s~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA~a~  649 (748)
T KOG4151|consen  571 SISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DEKFELAGAG  649 (748)
T ss_pred             CcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hhHHhhhccc
Confidence            777665566888777788888888899999999999999999877766666666 34556666666665 7777777777


Q ss_pred             HHHHHhcCCHHHHHH-HHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhh
Q 013228          274 TISNITAGNSEHIQA-VIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDL  344 (447)
Q Consensus       274 ~l~nl~~~~~~~~~~-l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~l  344 (447)
                      ++..++.-....+.. .--......+..++.++++.++......+.|+... ..+....+.....++.+...
T Consensus       650 a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~-~~ei~~~~~~~~~~~~l~~~  720 (748)
T KOG4151|consen  650 ALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEA-LFEIAEKIFETEVMELLSGL  720 (748)
T ss_pred             cccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHH-HHHHHHHhccchHHHHHHHH
Confidence            777666644444442 22345778888999999999999999999885443 44445555554445444443

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.15  E-value=0.043  Score=49.26  Aligned_cols=195  Identities=16%  Similarity=0.203  Sum_probs=120.7

Q ss_pred             HHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHH--hcCChHHHHHhhccCCchhHHHHHHHHHHHHhcC--CHHHH
Q 013228          211 PRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCII--NCGALPYLLGLLIHNHKKSIKTDACWTISNITAG--NSEHI  286 (447)
Q Consensus       211 ~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~--~~~~~  286 (447)
                      .-.+..+.+.+...|..++..+.++...... .+.+.  ...+++.+.+.++.+ ..+-+..|+.+++-++..  .....
T Consensus        46 ~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg-~~~E~~lA~~~l~Ll~ltlg~g~~~  123 (309)
T PF05004_consen   46 KEAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKG-KSEEQALAARALALLALTLGAGEDS  123 (309)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHhhhcCCCccH
Confidence            3444555666788899999888888754321 12121  124677888888887 555666677777766553  22334


Q ss_pred             HHHHHcCChHHHHHHHhcC--chhHHHHHHHHHHHhcCC--CCHHHHHHHHHcCChHHH--HhhccC----------CCH
Q 013228          287 QAVIDAGLIGPLVNLLQNA--EFDIKNWAARAISNATFG--GTHEQIKYLVREGCIKPL--CDLLLC----------ADP  350 (447)
Q Consensus       287 ~~l~~~~~~~~L~~~l~~~--~~~v~~~a~~aL~~l~~~--~~~~~~~~l~~~~~l~~L--~~ll~~----------~~~  350 (447)
                      ..+++. +.|.|...+..+  ...+|..++.+|+-++..  .+.+......+  .++.+  ....+.          +++
T Consensus       124 ~ei~~~-~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~  200 (309)
T PF05004_consen  124 EEIFEE-LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDA  200 (309)
T ss_pred             HHHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCcc
Confidence            455554 788888888855  345666666666655432  23333331111  23311  122221          235


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC
Q 013228          351 EIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWCGRV  423 (447)
Q Consensus       351 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~  423 (447)
                      .+...|+.+..-|+...+...           +...+  ...++.|..++.+++.+|+..|-+.|.-+|+...
T Consensus       201 ~l~~aAL~aW~lLlt~~~~~~-----------~~~~~--~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~  260 (309)
T PF05004_consen  201 ALVAAALSAWALLLTTLPDSK-----------LEDLL--EEALPALSELLDSDDVDVRIAAGEAIALLYELAR  260 (309)
T ss_pred             HHHHHHHHHHHHHHhcCCHHH-----------HHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence            789999999988886554422           22222  3347899999999999999999999998887555

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.15  E-value=0.017  Score=56.70  Aligned_cols=226  Identities=12%  Similarity=0.082  Sum_probs=144.5

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 013228           42 PRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVL  121 (447)
Q Consensus        42 ~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~  121 (447)
                      ...+..+.++. +.++..++..|..+... .+....+...+++...+..+++.++-+--+|+..+..||..-+       
T Consensus       730 qeai~sl~d~q-vpik~~gL~~l~~l~e~-r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~-------  800 (982)
T KOG4653|consen  730 QEAISSLHDDQ-VPIKGYGLQMLRHLIEK-RKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP-------  800 (982)
T ss_pred             HHHHHHhcCCc-ccchHHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc-------
Confidence            33444455666 78899999999999983 3556667777899999999999999999999999999985433       


Q ss_pred             hcCCHHHHHHHhccccc---hhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCc
Q 013228          122 SEEALIPLLTQLNKHAK---LSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTN  198 (447)
Q Consensus       122 ~~~~l~~l~~~l~~~~~---~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~  198 (447)
                       ..+++.+...-.+..+   .+.+-..-.++.++..............++...+...++++...+..++..+++++....
T Consensus       801 -e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a  879 (982)
T KOG4653|consen  801 -EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLA  879 (982)
T ss_pred             -hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHh
Confidence             3456666664422211   233334446666666554333344445666677777888888899999999999985433


Q ss_pred             HHHHHHHHhCcHHHHHHhc-CCCCchhHhHHHHHHHHhhcCChhhHHHHHh---cCChHHHHHhhccCCchhHHHHHHHH
Q 013228          199 DEIQAVIEAGVCPRLVELL-GHPSPSVLTRALQTVVNIAAGDDFQTQCIIN---CGALPYLLGLLIHNHKKSIKTDACWT  274 (447)
Q Consensus       199 ~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~---~~~l~~l~~~l~~~~~~~v~~~a~~~  274 (447)
                      ......+ ..++..++.+. .+++..+|+.|+..+..+..+.....-.+..   ......+....+...+..++..++.+
T Consensus       880 ~~vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~  958 (982)
T KOG4653|consen  880 FQVSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLC  958 (982)
T ss_pred             hhhhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence            2222111 12344444554 4567889999999999888766533222221   12333444444444355566666655


Q ss_pred             HHHH
Q 013228          275 ISNI  278 (447)
Q Consensus       275 l~nl  278 (447)
                      +-.+
T Consensus       959 leei  962 (982)
T KOG4653|consen  959 LEEI  962 (982)
T ss_pred             HHHH
Confidence            5443

>PRK14707 hypothetical protein; Provisional

Probab=97.14  E-value=0.59  Score=51.29  Aligned_cols=355  Identities=16%  Similarity=0.093  Sum_probs=205.9

Q ss_pred             HHHHHHhh-cCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCChhHH
Q 013228           41 VPRFVEFL-MREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLAS--PSDDIREQAVCALGNVAADSARCR  117 (447)
Q Consensus        41 v~~L~~ll-~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~i~~~a~~~L~~l~~~~~~~~  117 (447)
                      +..+++.+ +.+++.+.+..+......++. .+..+..+ +..+|..++..+..  +++..+..+...-..++.+ ...+
T Consensus       165 ~~lllNafSKw~~~~~c~~aa~~la~~~~~-~d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~-~~l~  241 (2710)
T PRK14707        165 ISLALNAFSKWSDNPDCQAVAPRFAALVAS-DDRLRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLADE-SRLR  241 (2710)
T ss_pred             HHHHHHHhhcCCCCchHHHHHHHHHHHhcC-Chhhhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCc-HHHH
Confidence            44555555 345545666665555555655 44444444 44556667776665  4566665555555566655 4444


Q ss_pred             HHHHhcCCHHHHHHHhccccchhHHHH-HHHHHHHhcCCCCCCChhhH-hhhHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 013228          118 DLVLSEEALIPLLTQLNKHAKLSMLRI-ATWTLSNFCAGKPKPIFDQV-RPALPALAQLVHSNDKEVMTDACRALFYLSE  195 (447)
Q Consensus       118 ~~~~~~~~l~~l~~~l~~~~~~~~~~~-a~~~L~~l~~~~~~~~~~~~-~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~  195 (447)
                      ..+.. ..+-..++.|.+-++..+=.. +.+.-..+..+. ....... .++-..+-.+-+.++..+...+...|..-..
T Consensus       242 ~~~~~-q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~-~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~  319 (2710)
T PRK14707        242 NELKP-QELGNALNALSKWADTPVCAAAASALAERLVDDP-GLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLA  319 (2710)
T ss_pred             HhCCh-HHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhH-HHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHh
Confidence            44433 345566666656666544444 444444555443 3322222 3444444555567777777666665554333


Q ss_pred             CCcHHHHHHHHhCcHHHHHHhc-CCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHH
Q 013228          196 GTNDEIQAVIEAGVCPRLVELL-GHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWT  274 (447)
Q Consensus       196 ~~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~  274 (447)
                      .+....+.+ +...+...+.-| +-++..+-..+...|..-...++...+ -++...+..++..++.-.+..+...++..
T Consensus       320 ~d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~-~l~~q~~a~~lNalsKWp~~~~c~~aa~~  397 (2710)
T PRK14707        320 DDPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRK-DLEPQGVSSVLNALSKWPDTPVCAAAASA  397 (2710)
T ss_pred             ccHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhc-ccchhHHHHHHhhhhcCCCchHHHHHHHH
Confidence            344443333 233344444444 446666666666666554444554444 34455666666767654467777777777


Q ss_pred             HHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHH
Q 013228          275 ISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVT  354 (447)
Q Consensus       275 l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~  354 (447)
                      |..=..++++..+.+-..|+-..|-.+-+-++..+...++.+|.--... +++.++-|--.++...|-.+-+.+|..+..
T Consensus       398 LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~-d~~l~~~~~p~~va~~LnalSKWPd~p~c~  476 (2710)
T PRK14707        398 LAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAH-DTELCKALDPINVTQALDALSKWPDTPICG  476 (2710)
T ss_pred             HHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhc-cHHHHhhcChHHHHHHHHHhhcCCCChhHH
Confidence            7655456667666666666666555555578888888888888765554 566666665556555666666778877766


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHH
Q 013228          355 VFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILE  416 (447)
Q Consensus       355 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~  416 (447)
                      .+.+.|..=+.....             ++..|.-.+....|..|...++......|..-+.
T Consensus       477 ~aa~~La~~l~~~~~-------------l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA  525 (2710)
T PRK14707        477 QTASALAARLAHERR-------------LRKALKPQEVVIALHSLSKWPDTPICAEAASALA  525 (2710)
T ss_pred             HHHHHHHHHhcccHH-------------HHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Confidence            666666655543332             3666777777788888888777665555544443

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=97.11  E-value=0.046  Score=46.57  Aligned_cols=195  Identities=14%  Similarity=0.072  Sum_probs=120.2

Q ss_pred             CchhHhHHHHHHHHhhcCChhhHHHHHhc-CChHHHHHh-------hccCC-chhHHHHHHHHH---HHHhcCCHHHHHH
Q 013228          221 SPSVLTRALQTVVNIAAGDDFQTQCIINC-GALPYLLGL-------LIHNH-KKSIKTDACWTI---SNITAGNSEHIQA  288 (447)
Q Consensus       221 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~l~~l~~~-------l~~~~-~~~v~~~a~~~l---~nl~~~~~~~~~~  288 (447)
                      +++.|..|+.-|+.--...++..-.+... |.+..|++=       +..+. ....-...|.+|   ..+++ .++.+..
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~   86 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMP   86 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHH
Confidence            44556666666665544444444444443 444444332       22220 122223334443   35544 5678889


Q ss_pred             HHHcCChHHHHHHHhcC-----chhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHH
Q 013228          289 VIDAGLIGPLVNLLQNA-----EFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKI  363 (447)
Q Consensus       289 l~~~~~~~~L~~~l~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l  363 (447)
                      +++.++.-.|..+++..     -+.+|.....+++.+...++++...++.+.++++...+.++.++.-.+..|..++.++
T Consensus        87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI  166 (262)
T PF04078_consen   87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI  166 (262)
T ss_dssp             HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            99998877777777732     3678999999999999998999999999999999999999999888888899999999


Q ss_pred             HHhhhhhhhhhhhcccccHHHHHHHHhchHHH-HHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 013228          364 LKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEK-IENLRSHDNDEIHEKSVKILETYWCGR  422 (447)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-l~~l~~~~~~~v~~~a~~~l~~~~~~~  422 (447)
                      +..+....-.+.      ..-+...-...+.. +..+...+++.+-+...++..++.+..
T Consensus       167 L~dd~GL~yiC~------t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp  220 (262)
T PF04078_consen  167 LLDDVGLNYICQ------TAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP  220 (262)
T ss_dssp             HHSHHHHHHHTS------SHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred             HcchhHHHHHhc------CHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence            987766543322      11222222223333 445677888888777666666665433

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=97.10  E-value=0.029  Score=52.62  Aligned_cols=154  Identities=16%  Similarity=0.162  Sum_probs=104.1

Q ss_pred             HHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHh-cCCCCchhHhHHHHHHHHhhcCChhhHHHHHh
Q 013228          170 ALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVEL-LGHPSPSVLTRALQTVVNIAAGDDFQTQCIIN  248 (447)
Q Consensus       170 ~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~l-L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~  248 (447)
                      .+-+++.+.++-++.....++.---....       ..+++..++.. .++.+.++|+.|.-+|+-+|..+.        
T Consensus       520 ~I~ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--------  584 (926)
T COG5116         520 YINELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--------  584 (926)
T ss_pred             HHHHHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCc--------
Confidence            56677788888888777766543222221       23567777777 678899999999999998887554        


Q ss_pred             cCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHH
Q 013228          249 CGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQ  328 (447)
Q Consensus       249 ~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~  328 (447)
                       ..+...+++|..+.+..+|...+.+|+-.|.++..+.       .+..|-.++.+...-||+.|+.+++-+...++++.
T Consensus       585 -~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~L  656 (926)
T COG5116         585 -DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPEL  656 (926)
T ss_pred             -chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCccc
Confidence             3455677777766689999999999998888654322       34445555666778899999999988887665543


Q ss_pred             HHHHHHcCChHHHHhhccCC
Q 013228          329 IKYLVREGCIKPLCDLLLCA  348 (447)
Q Consensus       329 ~~~l~~~~~l~~L~~ll~~~  348 (447)
                      ....  .++.+.+.+.+.+.
T Consensus       657 np~v--~~I~k~f~~vI~~K  674 (926)
T COG5116         657 NPNV--KRIIKKFNRVIVDK  674 (926)
T ss_pred             ChhH--HHHHHHHHHHHhhh
Confidence            2222  12444555554443

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.09  E-value=0.092  Score=48.56  Aligned_cols=269  Identities=14%  Similarity=0.104  Sum_probs=141.0

Q ss_pred             CCChHHHHHhh----CCCCHHHHHHHHHHHHHhhcCCh-hHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCC
Q 013228           81 HGAVPIFVKLL----ASPSDDIREQAVCALGNVAADSA-RCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAG  155 (447)
Q Consensus        81 ~~~i~~L~~ll----~~~~~~i~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  155 (447)
                      .|.+.-++..+    .+++..++..|++.|+|.+...| .++..  ....+..++..|..+.+.++.-.+..+|..+...
T Consensus       253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th--~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~  330 (533)
T KOG2032|consen  253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTH--KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK  330 (533)
T ss_pred             cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHh--HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh
Confidence            35454444433    34778999999999999998743 33322  2335777788776777888998888888877755


Q ss_pred             CCCCChh-hHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHH-HHHH--hCcHHHHHHhcCCCCchhHhHHHHH
Q 013228          156 KPKPIFD-QVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQ-AVIE--AGVCPRLVELLGHPSPSVLTRALQT  231 (447)
Q Consensus       156 ~~~~~~~-~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~-~~~~--~~~~~~L~~lL~~~~~~v~~~a~~~  231 (447)
                      ....... ..-++.-.+..+..+.+++.+..+...++.++.......+ .+.+  .+....++-.+.++++.+ ..||+.
T Consensus       331 ~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a~ACr~  409 (533)
T KOG2032|consen  331 ASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-ARACRS  409 (533)
T ss_pred             hhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH-HHHHHH
Confidence            4222222 1234444567788899999999998888877743222112 2221  122333444456666655 345555


Q ss_pred             HHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHH-HHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHH
Q 013228          232 VVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKT-DACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIK  310 (447)
Q Consensus       232 l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~-~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~  310 (447)
                      ....+..+- .++...  ++++.   .+ ...-...+. ..-|++ .+....++....+...     ..-++++.-+.+|
T Consensus       410 ~~~~c~p~l-~rke~~--~~~q~---~l-d~~~~~~q~Fyn~~c~-~L~~i~~d~l~~~~t~-----~~~~f~sswe~vr  476 (533)
T KOG2032|consen  410 ELRTCYPNL-VRKELY--HLFQE---SL-DTDMARFQAFYNQWCI-QLNHIHPDILMLLLTE-----DQHIFSSSWEQVR  476 (533)
T ss_pred             HHHhcCchh-HHHHHH--HHHhh---hh-HHhHHHHHHHHHHHHH-HHhhhCHHHHHHHHHh-----chhheecchHHHH
Confidence            555443222 122111  12221   11 110111111 111211 2222333433332222     1222333333444


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 013228          311 NWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILK  365 (447)
Q Consensus       311 ~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~  365 (447)
                      ..+...-.+...+-.+..+...-..-....+-.+..++-++++..+.+++..+..
T Consensus       477 ~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~  531 (533)
T KOG2032|consen  477 EAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV  531 (533)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence            4444433444333333333333222345566667778888999999998887754

>PRK14707 hypothetical protein; Provisional

Probab=97.06  E-value=0.7  Score=50.74  Aligned_cols=388  Identities=15%  Similarity=0.081  Sum_probs=207.8

Q ss_pred             CCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHH
Q 013228            8 DDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIF   87 (447)
Q Consensus         8 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L   87 (447)
                      ++.+.+..+......+++.  ......+-.+|+...|-.+-+-+++++. ..++..|.....+.+..+..+- ...+...
T Consensus       177 ~~~~c~~aa~~la~~~~~~--d~~~~~~~~q~ia~~lNa~sKWp~~~~c-~~aa~~la~~l~~~~~l~~~~~-~q~va~~  252 (2710)
T PRK14707        177 DNPDCQAVAPRFAALVASD--DRLRSAMDAQGVATVLNALCKWPDTPDC-GNAVSALAERLADESRLRNELK-PQELGNA  252 (2710)
T ss_pred             CCchHHHHHHHHHHHhcCC--hhhhcccchHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHcCcHHHHHhCC-hHHHHHH
Confidence            3444444444443344333  3334444444444444444456774444 4555555555443455444443 3345555


Q ss_pred             HHhhCC-CCH-HHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHH-HhcCCCCCCChhhH
Q 013228           88 VKLLAS-PSD-DIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLS-NFCAGKPKPIFDQV  164 (447)
Q Consensus        88 ~~ll~~-~~~-~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~-~l~~~~~~~~~~~~  164 (447)
                      +..|.. ++. ..+..+..+-..++ +.+..+..+-.. .+...++-|.+-++..+-+.+...|. .|.. .+.......
T Consensus       253 lN~lsKwp~~~~C~~a~~~lA~rl~-~~~~l~~al~~q-~vanalNalSKwpd~~vc~~Aa~~la~rl~~-d~~l~~~~~  329 (2710)
T PRK14707        253 LNALSKWADTPVCAAAASALAERLV-DDPGLRKALDPI-NVTQALNALSKWADLPVCAEAAIALAERLAD-DPELCKALN  329 (2710)
T ss_pred             HHHHhcCCCchHHHHHHHHHHHHHh-hhHHHHHhcCHH-HHHHHHhhhhcCCCchHHHHHHHHHHHHHhc-cHhhhhccc
Confidence            555554 544 44444444444555 444455554332 35555666666777666555544444 4444 333333333


Q ss_pred             -hhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhc-CCCCchhHhHHHHHHHHhhcCChhh
Q 013228          165 -RPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELL-GHPSPSVLTRALQTVVNIAAGDDFQ  242 (447)
Q Consensus       165 -~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~a~~~l~~l~~~~~~~  242 (447)
                       .++-..|-.+-+-+|..+...+...|..-...++...+.+ +..++...+.-+ +-++..+-..+...|..-...+.+.
T Consensus       330 ~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l-~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l  408 (2710)
T PRK14707        330 ARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDL-EPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLEL  408 (2710)
T ss_pred             hHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhccc-chhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhh
Confidence             3333344444556777776666666654444444444433 334455555555 4477677677777776655556655


Q ss_pred             HHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcC
Q 013228          243 TQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATF  322 (447)
Q Consensus       243 ~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~  322 (447)
                      .+ -++...+.-.+..|..-.+..+...++..|.--..++.+.++.+--.++...|-.+-+-+|..+...++..|..-..
T Consensus       409 ~~-~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~  487 (2710)
T PRK14707        409 RK-GLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQTASALAARLA  487 (2710)
T ss_pred             hh-hcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhc
Confidence            44 44556666666666655477777777777765555666655544444444444344445777777777777764433


Q ss_pred             CCCHHHHHHHHHcCChHHHHhhccCCCHH-HHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhc
Q 013228          323 GGTHEQIKYLVREGCIKPLCDLLLCADPE-IVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRS  401 (447)
Q Consensus       323 ~~~~~~~~~l~~~~~l~~L~~ll~~~~~~-~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~  401 (447)
                      . +++..+.|--.++...|-.+-+.++.. ....+.++-..+..-              ......|...+....+..+..
T Consensus       488 ~-~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~--------------~~l~~~~~~~~~~~~lnalSK  552 (2710)
T PRK14707        488 H-ERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVDE--------------LQLRKAFDAHQVVNTLKALSK  552 (2710)
T ss_pred             c-cHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhccc--------------hhhhhhhhhHHHHHHHHhhhc
Confidence            3 445555554445555565566666643 333444444444321              113455566666677777777


Q ss_pred             CCCHHHHHHHHHHHHHhc
Q 013228          402 HDNDEIHEKSVKILETYW  419 (447)
Q Consensus       402 ~~~~~v~~~a~~~l~~~~  419 (447)
                      .+..+..+.|..-|...+
T Consensus       553 wp~s~~C~~A~~~iA~~l  570 (2710)
T PRK14707        553 WPDKQLCAVAASGLAERL  570 (2710)
T ss_pred             CCchhHHHHHHHHHHHHh
Confidence            776666666666555544

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=97.06  E-value=0.03  Score=50.26  Aligned_cols=171  Identities=17%  Similarity=0.193  Sum_probs=115.5

Q ss_pred             HHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccC-CcHHHHHH
Q 013228          126 LIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEG-TNDEIQAV  204 (447)
Q Consensus       126 l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~-~~~~~~~~  204 (447)
                      +..++.--..+.+..+++.++.+++-.|--+.    ......++.+.+.++.+++.++..++.++..+... ........
T Consensus        28 l~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~----~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~  103 (298)
T PF12719_consen   28 LDSLILPAVQSSDPAVRELALKCLGLCCLLDK----ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSE  103 (298)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccch
Confidence            44444222267788999999999999986542    34456677788888778999999999999988843 22221111


Q ss_pred             -------HHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccC---CchhHHHHHHHH
Q 013228          205 -------IEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHN---HKKSIKTDACWT  274 (447)
Q Consensus       205 -------~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~---~~~~v~~~a~~~  274 (447)
                             ....++..+.+.+.+.+++++..|+..++.|.-...-..    ...++..|+-..-++   .+..+|..-...
T Consensus       104 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~F  179 (298)
T PF12719_consen  104 SDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQCLSVF  179 (298)
T ss_pred             hccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHHHHHH
Confidence                   123577888888988899999999999999875433111    023344444444332   246788888888


Q ss_pred             HHHHhcCCHHHHHHHHHcCChHHHHHHHhcC
Q 013228          275 ISNITAGNSEHIQAVIDAGLIGPLVNLLQNA  305 (447)
Q Consensus       275 l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~  305 (447)
                      +-..+..++++ +..+...++|.+..+....
T Consensus       180 fp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  180 FPVYASSSPEN-QERLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             HHHHHcCCHHH-HHHHHHHHHHHHHHHHhCc
Confidence            88888877665 4555566888888877743

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.05  E-value=0.0027  Score=46.94  Aligned_cols=70  Identities=17%  Similarity=0.314  Sum_probs=58.2

Q ss_pred             ChHHHHhhc-cCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHH
Q 013228          337 CIKPLCDLL-LCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKIL  415 (447)
Q Consensus       337 ~l~~L~~ll-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l  415 (447)
                      ++..|+.+| .+.|+.+...|+.=|..+++.-+..             +..+.+.|+-..+.+|+++++++|+..|...+
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g-------------r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~av  110 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG-------------RNIIEKLGAKERVMELMNHEDPEVRYEALLAV  110 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG-------------HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhH-------------HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHH
Confidence            477888888 4467788888999999999876654             67789999999999999999999999999998


Q ss_pred             HHhc
Q 013228          416 ETYW  419 (447)
Q Consensus       416 ~~~~  419 (447)
                      +++.
T Consensus       111 Qklm  114 (119)
T PF11698_consen  111 QKLM  114 (119)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=96.99  E-value=0.19  Score=45.19  Aligned_cols=197  Identities=13%  Similarity=0.114  Sum_probs=124.0

Q ss_pred             HHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHH--HhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcC--ChhhH
Q 013228          168 LPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVI--EAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG--DDFQT  243 (447)
Q Consensus       168 l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~--~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~--~~~~~  243 (447)
                      +...+..+.+...+.|..++..+.++....... +.+.  ..-++..+.+.++.+...-+..|+++++-++-.  .....
T Consensus        45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~-d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~  123 (309)
T PF05004_consen   45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLP-DFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS  123 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence            444555566667889999999998887543221 2221  124677778888777766667777777776543  22333


Q ss_pred             HHHHhcCChHHHHHhhccCC-chhHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHH--HHhc----------Cch
Q 013228          244 QCIINCGALPYLLGLLIHNH-KKSIKTDACWTISNITA---GNSEHIQAVIDAGLIGPLVN--LLQN----------AEF  307 (447)
Q Consensus       244 ~~~~~~~~l~~l~~~l~~~~-~~~v~~~a~~~l~nl~~---~~~~~~~~l~~~~~~~~L~~--~l~~----------~~~  307 (447)
                      ..+++ .+.+.|.+.+.++. ...+|..++.+|+-++.   ..++.....++  .+..+..  ..+.          +++
T Consensus       124 ~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~  200 (309)
T PF05004_consen  124 EEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDA  200 (309)
T ss_pred             HHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCcc
Confidence            44554 57788888887652 34566666667765544   33343332222  2221111  1221          135


Q ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 013228          308 DIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEA  369 (447)
Q Consensus       308 ~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~  369 (447)
                      .+...|+.+.+-++...+........ ...++.|..+|++.+.+++.+|-.+|.-+++....
T Consensus       201 ~l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~  261 (309)
T PF05004_consen  201 ALVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYELARD  261 (309)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence            68888888888887655544344333 24589999999999999999999999999887664

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.96  E-value=0.28  Score=45.50  Aligned_cols=114  Identities=13%  Similarity=0.109  Sum_probs=74.1

Q ss_pred             hhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHH-hcCCCCchhHhHHHHHHHHhhcCChhhH
Q 013228          165 RPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVE-LLGHPSPSVLTRALQTVVNIAAGDDFQT  243 (447)
Q Consensus       165 ~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~-lL~~~~~~v~~~a~~~l~~l~~~~~~~~  243 (447)
                      ..++..+..-..+++..++..|++.|.|.+...++........ .+..++. +....+.+|...++.+|..+...-....
T Consensus       257 ~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~  335 (533)
T KOG2032|consen  257 GSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDD  335 (533)
T ss_pred             HHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcc
Confidence            3444444445567788999999999999998856554433333 3444444 4455678899999999887764322111


Q ss_pred             HHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc
Q 013228          244 QCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA  280 (447)
Q Consensus       244 ~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~  280 (447)
                      -..+--.+.-.+..++.+. +.++|..+...++.++.
T Consensus       336 l~~~~l~ialrlR~l~~se-~~~~R~aa~~Lfg~L~~  371 (533)
T KOG2032|consen  336 LESYLLNIALRLRTLFDSE-DDKMRAAAFVLFGALAK  371 (533)
T ss_pred             hhhhchhHHHHHHHHHHhc-ChhhhhhHHHHHHHHHH
Confidence            1111112444566777788 89999999888887765

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=96.95  E-value=0.047  Score=50.41  Aligned_cols=222  Identities=12%  Similarity=0.133  Sum_probs=129.7

Q ss_pred             HHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh-hHHHHHHhcCCHHHHHHHhcccc
Q 013228           59 EAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSA-RCRDLVLSEEALIPLLTQLNKHA  137 (447)
Q Consensus        59 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~l~~~l~~~~  137 (447)
                      .|++.|-.+....+.....+.+.+++..++..++..-....+.  .-...-....+ ..+.....       ...+ ...
T Consensus         3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~--~~~~~~~~~~~~~~~~~~~~-------~~~i-~~~   72 (379)
T PF06025_consen    3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE--NKNEEAGSGIPPEYKESSVD-------GYSI-SYQ   72 (379)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--ccccCCCCCCCCCccccccc-------cccc-CHH
Confidence            4667777777767777888899999999999886522211110  00000000000 00000000       0000 111


Q ss_pred             chhHHHHHHHHHHHhcC-CC--C-CCChhhH-hhhHHHHHHhhccC---ChhHHHHHHHHHHHhccCCcHHHHHHHHhCc
Q 013228          138 KLSMLRIATWTLSNFCA-GK--P-KPIFDQV-RPALPALAQLVHSN---DKEVMTDACRALFYLSEGTNDEIQAVIEAGV  209 (447)
Q Consensus       138 ~~~~~~~a~~~L~~l~~-~~--~-~~~~~~~-~~~l~~l~~ll~~~---~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~  209 (447)
                      ...+.+..+.++..+.. ..  . ..+.... ..++..|...+++.   -+.+...++..+..+..+.+.....+.+.|+
T Consensus        73 r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl  152 (379)
T PF06025_consen   73 RQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGL  152 (379)
T ss_pred             HHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCC
Confidence            12344444455555554 22  1 1111222 34555566667655   3788899999999999888888888999999


Q ss_pred             HHHHHHhcC-C---CCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchh-HHH-HHHHHH----HHHh
Q 013228          210 CPRLVELLG-H---PSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKS-IKT-DACWTI----SNIT  279 (447)
Q Consensus       210 ~~~L~~lL~-~---~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~-v~~-~a~~~l----~nl~  279 (447)
                      .+.++..+. .   ++.++....-.+++.+|- +....+.+.+.+.++.+.+++.++.... ++. ..+..+    -.|.
T Consensus       153 ~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~  231 (379)
T PF06025_consen  153 IDAFLDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELM  231 (379)
T ss_pred             hHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHH
Confidence            999999887 4   445666666677777776 4456677888999999999998762111 111 233333    4555


Q ss_pred             cCCHHHHHHHHH
Q 013228          280 AGNSEHIQAVID  291 (447)
Q Consensus       280 ~~~~~~~~~l~~  291 (447)
                      ++.|..+..+++
T Consensus       232 RH~p~Lk~~i~~  243 (379)
T PF06025_consen  232 RHHPSLKPDIID  243 (379)
T ss_pred             ccCHHHHHHHHH
Confidence            666665555444

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=96.95  E-value=0.093  Score=48.21  Aligned_cols=174  Identities=13%  Similarity=0.146  Sum_probs=113.8

Q ss_pred             HHHHHHHH-HHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhh
Q 013228           97 DIREQAVC-ALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLV  175 (447)
Q Consensus        97 ~i~~~a~~-~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll  175 (447)
                      +-+..|+. ...-+|.++...-+.... ..+..+++.|..+.+...+..|+.+|..++...+..-.....-.+..+++.-
T Consensus       302 ~~~k~alsel~~m~~e~sfsvWeq~f~-~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa  380 (516)
T KOG2956|consen  302 SERKEALSELPKMLCEGSFSVWEQHFA-EILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAA  380 (516)
T ss_pred             hHHHHHHHHHHHHHHccchhHHHHHHH-HHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHH
Confidence            34444444 444555554333332211 2466788888666788889999999999999886665555566777777777


Q ss_pred             ccCChhHHHHHHHH-HHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHH
Q 013228          176 HSNDKEVMTDACRA-LFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPY  254 (447)
Q Consensus       176 ~~~~~~v~~~al~~-l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~  254 (447)
                      .+.++++...|... +.-++.+.+.+.        +..+..++...+...-..++..+..++..-....-..+-..+.|.
T Consensus       381 ~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~  452 (516)
T KOG2956|consen  381 KDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPC  452 (516)
T ss_pred             hCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhH
Confidence            77766665555543 444445554432        334444554466666677777888887654432222233478999


Q ss_pred             HHHhhccCCchhHHHHHHHHHHHHhc
Q 013228          255 LLGLLIHNHKKSIKTDACWTISNITA  280 (447)
Q Consensus       255 l~~~l~~~~~~~v~~~a~~~l~nl~~  280 (447)
                      +++...+. +..||+.|++||..+..
T Consensus       453 ~iqay~S~-SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  453 VIQAYDST-SSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             HHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence            99999999 99999999999988754

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.95  E-value=0.23  Score=48.39  Aligned_cols=168  Identities=18%  Similarity=0.137  Sum_probs=104.8

Q ss_pred             HHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHh-hccCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 013228          210 CPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGL-LIHNHKKSIKTDACWTISNITAGNSEHIQA  288 (447)
Q Consensus       210 ~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~-l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~  288 (447)
                      =+.+-+++.+.++-+|...+.+++.--.+..       +.+++..|+.. .++. +.+||+.|+.+|+-++..+++    
T Consensus       521 d~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~-nDDVrRaAVialGFVl~~dp~----  588 (929)
T KOG2062|consen  521 DPLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDV-NDDVRRAAVIALGFVLFRDPE----  588 (929)
T ss_pred             HHHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhccccccc-chHHHHHHHHHheeeEecChh----
Confidence            3445566677777777777666543222221       22456666666 4455 999999999999999988877    


Q ss_pred             HHHcCChHHHHHHHh-cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 013228          289 VIDAGLIGPLVNLLQ-NAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVG  367 (447)
Q Consensus       289 l~~~~~~~~L~~~l~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~  367 (447)
                           .+|..+++|. +-++.||.-++-+|+-.+.......        .+..|..+..+...-+|..|+-++.-++...
T Consensus       589 -----~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e--------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~  655 (929)
T KOG2062|consen  589 -----QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE--------AINLLEPLTSDPVDFVRQGALIALAMIMIQQ  655 (929)
T ss_pred             -----hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH--------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhc
Confidence                 4566777777 4589999999999987776532211        3445555666666678888888777776433


Q ss_pred             hhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHH
Q 013228          368 EAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILE  416 (447)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~  416 (447)
                      ....     .++    ..     ++.+.+.++.+..+++.-.+--.+|.
T Consensus       656 t~~~-----~pk----v~-----~frk~l~kvI~dKhEd~~aK~GAilA  690 (929)
T KOG2062|consen  656 TEQL-----CPK----VN-----GFRKQLEKVINDKHEDGMAKFGAILA  690 (929)
T ss_pred             cccc-----Cch----HH-----HHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            2211     011    12     22345556666666665444444443

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.90  E-value=0.052  Score=53.55  Aligned_cols=223  Identities=13%  Similarity=0.159  Sum_probs=138.4

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHh
Q 013228           86 IFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVR  165 (447)
Q Consensus        86 ~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  165 (447)
                      .-+..+.++-..++-.++..|..+..... ....+...+++...+..+ .+.|+-+.-+|...+..||.-.       ..
T Consensus       731 eai~sl~d~qvpik~~gL~~l~~l~e~r~-~~~~~~~ekvl~i~ld~L-kdedsyvyLnaI~gv~~Lcevy-------~e  801 (982)
T KOG4653|consen  731 EAISSLHDDQVPIKGYGLQMLRHLIEKRK-KATLIQGEKVLAIALDTL-KDEDSYVYLNAIRGVVSLCEVY-------PE  801 (982)
T ss_pred             HHHHHhcCCcccchHHHHHHHHHHHHhcc-hhhhhhHHHHHHHHHHHh-cccCceeeHHHHHHHHHHHHhc-------ch
Confidence            33444556677889999999999987543 234555677888888888 7888888888998888888653       24


Q ss_pred             hhHHHHHHh-hccC---ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChh
Q 013228          166 PALPALAQL-VHSN---DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDF  241 (447)
Q Consensus       166 ~~l~~l~~l-l~~~---~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~  241 (447)
                      .++|.+... ....   .++.+..+-.++.++...-.+....... .++..++..+++++...|..++..++++|.....
T Consensus       802 ~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~  880 (982)
T KOG4653|consen  802 DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAF  880 (982)
T ss_pred             hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhh
Confidence            566766663 3221   1334444556777766544443322222 4567777778888888899999999999864432


Q ss_pred             hHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---cCChHHHHHHHhc-CchhHHHHHHHHH
Q 013228          242 QTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVID---AGLIGPLVNLLQN-AEFDIKNWAARAI  317 (447)
Q Consensus       242 ~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~---~~~~~~L~~~l~~-~~~~v~~~a~~aL  317 (447)
                      .....+ ..++..++.+...+....+|+.|+..+..+..+.....-.+..   .+....+..+... ++..++..|+.++
T Consensus       881 ~vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~l  959 (982)
T KOG4653|consen  881 QVSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCL  959 (982)
T ss_pred             hhhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            222111 1345556666665558899999999999887754432222221   1223333333332 3444555555554


Q ss_pred             HH
Q 013228          318 SN  319 (447)
Q Consensus       318 ~~  319 (447)
                      -.
T Consensus       960 ee  961 (982)
T KOG4653|consen  960 EE  961 (982)
T ss_pred             HH
Confidence            33

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.88  E-value=0.21  Score=41.87  Aligned_cols=141  Identities=11%  Similarity=0.152  Sum_probs=100.7

Q ss_pred             hHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccC----CchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHH
Q 013228          226 TRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHN----HKKSIKTDACWTISNITA-GNSEHIQAVIDAGLIGPLVN  300 (447)
Q Consensus       226 ~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~----~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~  300 (447)
                      -.|+..+..+++ +++.+..++++.+--.+..+|...    ..+.+|-.+.++++.+.. ++.+.+..+...+++|..++
T Consensus        97 cnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr  175 (293)
T KOG3036|consen   97 CNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR  175 (293)
T ss_pred             HHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence            344545554454 555667788888877777777532    257789999999999987 56677888889999999999


Q ss_pred             HHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHH--------cCChHH-HHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 013228          301 LLQNAEFDIKNWAARAISNATFGGTHEQIKYLVR--------EGCIKP-LCDLLLCADPEIVTVFLKGLEKILKVGEA  369 (447)
Q Consensus       301 ~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~--------~~~l~~-L~~ll~~~~~~~~~~a~~~l~~l~~~~~~  369 (447)
                      .+..++...+..|...+..+...+  ....++.+        .-.+.. +..+.+.+++.+.+.++.+..++..+...
T Consensus       176 ime~GSelSKtvA~fIlqKIlldD--~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnpra  251 (293)
T KOG3036|consen  176 IMESGSELSKTVATFILQKILLDD--VGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRA  251 (293)
T ss_pred             HHhcccHHHHHHHHHHHHHHhhcc--ccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHH
Confidence            999999999999999999888753  22222221        112333 33344567888888888888888765543

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=96.84  E-value=0.25  Score=42.06  Aligned_cols=241  Identities=17%  Similarity=0.226  Sum_probs=144.1

Q ss_pred             HHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHH
Q 013228           10 NNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVK   89 (447)
Q Consensus        10 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~   89 (447)
                      ..-++.|+..|+++...            +.+..+.+...+++ ...+...+.+|+....           ...++.|+.
T Consensus        19 l~~r~rALf~Lr~l~~~------------~~i~~i~ka~~d~s-~llkhe~ay~LgQ~~~-----------~~Av~~l~~   74 (289)
T KOG0567|consen   19 LQNRFRALFNLRNLLGP------------AAIKAITKAFIDDS-ALLKHELAYVLGQMQD-----------EDAVPVLVE   74 (289)
T ss_pred             HHHHHHHHHhhhccCCh------------HHHHHHHHhcccch-hhhccchhhhhhhhcc-----------chhhHHHHH
Confidence            34455566666555442            12555555555554 5667777778877765           246788888


Q ss_pred             hhCC--CCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCC-----------
Q 013228           90 LLAS--PSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK-----------  156 (447)
Q Consensus        90 ll~~--~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-----------  156 (447)
                      .+.+  ..+-+|..|..+|+.+. . +.         .++.+-+.. +++-.++++.+..++..+-...           
T Consensus        75 vl~desq~pmvRhEAaealga~~-~-~~---------~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~  142 (289)
T KOG0567|consen   75 VLLDESQEPMVRHEAAEALGAIG-D-PE---------SLEILTKYI-KDPCKEVRETCELAIKRLEWKDIIDKIANSSPY  142 (289)
T ss_pred             HhcccccchHHHHHHHHHHHhhc-c-hh---------hHHHHHHHh-cCCccccchHHHHHHHHHHHhhccccccccCcc
Confidence            7765  56788888999998886 2 21         133333333 5555666666666665553222           


Q ss_pred             ----CCCChhhHhhhHHHHHHhh-ccCChhH-HHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHH
Q 013228          157 ----PKPIFDQVRPALPALAQLV-HSNDKEV-MTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQ  230 (447)
Q Consensus       157 ----~~~~~~~~~~~l~~l~~ll-~~~~~~v-~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~  230 (447)
                          |...  ....-+..+-..+ ....+.. +..+...|+|+..  ++         .+..|..-+..++.-+|..+..
T Consensus       143 ~SvdPa~p--~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~--Ee---------aI~al~~~l~~~SalfrhEvAf  209 (289)
T KOG0567|consen  143 ISVDPAPP--ANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT--EE---------AINALIDGLADDSALFRHEVAF  209 (289)
T ss_pred             ccCCCCCc--cccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--HH---------HHHHHHHhcccchHHHHHHHHH
Confidence                1111  1111233333333 3222222 4456666666542  22         2445566677778888999999


Q ss_pred             HHHHhhcCChhhHHHHHhcCChHHHHHhhcc-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhH
Q 013228          231 TVVNIAAGDDFQTQCIINCGALPYLLGLLIH-NHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDI  309 (447)
Q Consensus       231 ~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~-~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v  309 (447)
                      +++.+-..           -.++.|.+.|.. .+.+.+|.+|+.+|+.++.  ++         .++.|.+.+..+++-+
T Consensus       210 VfGQl~s~-----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e~---------~~~vL~e~~~D~~~vv  267 (289)
T KOG0567|consen  210 VFGQLQSP-----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--ED---------CVEVLKEYLGDEERVV  267 (289)
T ss_pred             HHhhccch-----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--HH---------HHHHHHHHcCCcHHHH
Confidence            99876531           245566666643 3378999999999999854  23         4566777777777778


Q ss_pred             HHHHHHHHHHhc
Q 013228          310 KNWAARAISNAT  321 (447)
Q Consensus       310 ~~~a~~aL~~l~  321 (447)
                      ++.+..+|.-+-
T Consensus       268 ~esc~valdm~e  279 (289)
T KOG0567|consen  268 RESCEVALDMLE  279 (289)
T ss_pred             HHHHHHHHHHHH
Confidence            888777775543

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.79  E-value=0.0024  Score=47.28  Aligned_cols=72  Identities=15%  Similarity=0.275  Sum_probs=61.4

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 013228           39 GVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVA  110 (447)
Q Consensus        39 ~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~  110 (447)
                      .++..|+++|..++++.+...||.=|+.++...|..+..+-+.|+=..+..++.+++++++..|+.++..+.
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            368899999955544888999999999999989999998888899999999999999999999999988774

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.79  E-value=0.021  Score=58.10  Aligned_cols=160  Identities=19%  Similarity=0.184  Sum_probs=120.9

Q ss_pred             ChHHHHHhhCC----CCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCC
Q 013228           83 AVPIFVKLLAS----PSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPK  158 (447)
Q Consensus        83 ~i~~L~~ll~~----~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~  158 (447)
                      ..|.++...+.    .+|+++.+|.-+|+.+..-+..+-+     ..++.++..+..++++.++.++.-+++.++...|.
T Consensus       920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fpn  994 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN  994 (1251)
T ss_pred             HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence            44566666644    5799999999999999865544322     24889999998899999999999999998876544


Q ss_pred             CChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcC
Q 013228          159 PIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG  238 (447)
Q Consensus       159 ~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~  238 (447)
                      .    ....-+.+...|++.++.++..|+..+.++.-++--+     -.|.+.-+..++.+++..++..|=..+..|+..
T Consensus       995 l----ie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiK-----VKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen  995 L----IEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIK-----VKGQLSEMALCLEDPNAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred             c----cchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhH-----hcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc
Confidence            3    2445667888999999999999999999998654332     348899999999999999998887777777754


Q ss_pred             ChhhHHHHHhcCChHHHHHhhccC
Q 013228          239 DDFQTQCIINCGALPYLLGLLIHN  262 (447)
Q Consensus       239 ~~~~~~~~~~~~~l~~l~~~l~~~  262 (447)
                      ..    .++  +++|-++.-|.++
T Consensus      1066 ~n----~iy--nlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1066 GN----TIY--NLLPDILSRLSNG 1083 (1251)
T ss_pred             cc----chh--hhchHHHHhhccC
Confidence            43    233  3566666666544

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.78  E-value=0.084  Score=47.44  Aligned_cols=111  Identities=15%  Similarity=0.203  Sum_probs=83.6

Q ss_pred             CcHHHH-HHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc-CCHHH
Q 013228          208 GVCPRL-VELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA-GNSEH  285 (447)
Q Consensus       208 ~~~~~L-~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~-~~~~~  285 (447)
                      +++..+ .+.++++++.+|..++.++|-.+-.+.....     ..++.+...+..+ +..++..|+.++..+.. ++.+.
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchh
Confidence            344443 4778889999999999999998876664433     3466778888777 89999999999998876 33332


Q ss_pred             HHHHH-------HcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCC
Q 013228          286 IQAVI-------DAGLIGPLVNLLQNAEFDIKNWAARAISNATFGG  324 (447)
Q Consensus       286 ~~~l~-------~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~  324 (447)
                      .....       ...++..+...+.+.+++++..|+..++.+...+
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~  145 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG  145 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence            22222       2456778888888889999999999999988764

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=96.77  E-value=0.58  Score=45.85  Aligned_cols=298  Identities=16%  Similarity=0.086  Sum_probs=159.4

Q ss_pred             HHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcC----C---CCHHHHHHHHHHHHHHcC--CChhhHHHHHhCCCh
Q 013228           14 LEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMR----E---DYPQLQFEAAWALKNIVS--GTSEDTKVVIDHGAV   84 (447)
Q Consensus        14 ~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~----~---~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~~i   84 (447)
                      ..|+..+..+.++....     .-.|+++.+...|..    +   +++.-.+.|++.+.++..  +.......+.+.=++
T Consensus       388 laal~fl~~~~sKrke~-----TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv  462 (970)
T COG5656         388 LAALFFLIISKSKRKEE-----TFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIV  462 (970)
T ss_pred             HHHHHHHHHHhcccchh-----hhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHH
Confidence            45666666665553121     125788999988832    1   123445677777777655  333334445555567


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhH
Q 013228           85 PIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQV  164 (447)
Q Consensus        85 ~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  164 (447)
                      +.++..++++..-++..++..++.+..+-   ++...-..+.+...+.+ .+.+..++..|+.++.-+..+. .......
T Consensus       463 ~hv~P~f~s~ygfL~Srace~is~~eeDf---kd~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~-q~h~k~s  537 (970)
T COG5656         463 NHVIPAFRSNYGFLKSRACEFISTIEEDF---KDNGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNE-QSHEKFS  537 (970)
T ss_pred             HHhhHhhcCcccchHHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhch-hhhHHHH
Confidence            77788888999999999999999995432   22322334566667777 4467788888888888887775 3333333


Q ss_pred             hhhH---HHHHHhhccCChhHHHHHHHHHH-HhccCCcHHHHHHHH---hCcHHHHHHhcCCCC------chhHhHHHHH
Q 013228          165 RPAL---PALAQLVHSNDKEVMTDACRALF-YLSEGTNDEIQAVIE---AGVCPRLVELLGHPS------PSVLTRALQT  231 (447)
Q Consensus       165 ~~~l---~~l~~ll~~~~~~v~~~al~~l~-~l~~~~~~~~~~~~~---~~~~~~L~~lL~~~~------~~v~~~a~~~  231 (447)
                      ..+.   +.++.+-+.-+.++...++..+. ..+..-......+..   ..++.....++..++      ++-+..|...
T Consensus       538 ahVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGi  617 (970)
T COG5656         538 AHVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGI  617 (970)
T ss_pred             hhhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHH
Confidence            3333   33333333334444444444332 222221111111111   122233333343321      2234444444


Q ss_pred             HHHhhc------CChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC
Q 013228          232 VVNIAA------GDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNA  305 (447)
Q Consensus       232 l~~l~~------~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~  305 (447)
                      |..+..      ..+...+ -+.....|.+--++++. ..+.-.+|+-.+-+......+.-  -+--|+.+.+.+++.+.
T Consensus       618 L~T~~smiLSlen~p~vLk-~le~slypvi~Filkn~-i~dfy~Ea~dildg~tf~skeI~--pimwgi~Ell~~~l~~~  693 (970)
T COG5656         618 LRTIESMILSLENRPLVLK-YLEVSLYPVISFILKNE-ISDFYQEALDILDGYTFMSKEIE--PIMWGIFELLLNLLIDE  693 (970)
T ss_pred             HHHHHHHHHhcccchHHHH-HHHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHHhh--hhhhHHHHHHHhccccc
Confidence            444321      1222222 22334556666666666 67777788877776654332211  11123444444444444


Q ss_pred             c-hhHHHHHHHHHHHhcCCCC
Q 013228          306 E-FDIKNWAARAISNATFGGT  325 (447)
Q Consensus       306 ~-~~v~~~a~~aL~~l~~~~~  325 (447)
                      . ......++-++.|+...+.
T Consensus       694 ~t~~y~ee~~~al~nfityG~  714 (970)
T COG5656         694 ITAVYSEEVADALDNFITYGK  714 (970)
T ss_pred             chhhhHHHHHHHHHHHHHhCc
Confidence            4 2566788889999987763

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=96.67  E-value=0.02  Score=45.74  Aligned_cols=144  Identities=16%  Similarity=0.175  Sum_probs=99.1

Q ss_pred             HHHHHhcC--CCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 013228          211 PRLVELLG--HPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQA  288 (447)
Q Consensus       211 ~~L~~lL~--~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~  288 (447)
                      ..++..|.  ...+.+|..+.-++..+.   +...+. ....+-+.+-..+..+ +.+-...++.++..+....++....
T Consensus         6 ~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~-~~~~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~~   80 (157)
T PF11701_consen    6 DTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREE-FKEKISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGSE   80 (157)
T ss_dssp             CHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHH-HHHHHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred             HHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHH-HHHHHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHHH
Confidence            34444443  467889999999998885   222222 2223344555556655 6667788888999998888888777


Q ss_pred             HH-HcCChHHHHHHHh--cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccC-CCHH-HHHHHHHHHHH
Q 013228          289 VI-DAGLIGPLVNLLQ--NAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC-ADPE-IVTVFLKGLEK  362 (447)
Q Consensus       289 l~-~~~~~~~L~~~l~--~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~-~~~~a~~~l~~  362 (447)
                      ++ ..|+++.+..++.  +++..++..++.+|..-+.  +...+.. +...+++.|.+.++. +++. ++..|+-+|.+
T Consensus        81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~--d~~~r~~-I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI--DKSCRTF-ISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT--SHHHHHC-CHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc--cHHHHHH-HHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            76 5789999999999  7788999999999988776  3444444 444569999999964 4454 67776666554

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=96.62  E-value=0.2  Score=48.61  Aligned_cols=253  Identities=13%  Similarity=0.115  Sum_probs=159.2

Q ss_pred             CCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcccc-chhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHH
Q 013228           94 PSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHA-KLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALA  172 (447)
Q Consensus        94 ~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~  172 (447)
                      .+.+-+..-...|..-.   +...+.+.....++.++..+..+. ...+....+. +.......+     +...++|.++
T Consensus       266 ks~~eK~~Ff~~L~~~l---~~~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k-~~k~ld~~e-----yq~~i~p~l~  336 (690)
T KOG1243|consen  266 KSVEEKQKFFSGLIDRL---DNFPEEIIASKVLPILLAALEFGDAASDFLTPLFK-LGKDLDEEE-----YQVRIIPVLL  336 (690)
T ss_pred             CcHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHhhccccchhhhhHHHH-hhhhccccc-----cccchhhhHH
Confidence            45555555444444422   222333444455666666663333 1222222221 122211111     4477899999


Q ss_pred             HhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCCh
Q 013228          173 QLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGAL  252 (447)
Q Consensus       173 ~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l  252 (447)
                      +++...|..+|...+.-+-.....-+   +..++..+++.+..-+.+.++.+|...+.++..++..-...   .++...+
T Consensus       337 kLF~~~Dr~iR~~LL~~i~~~i~~Lt---~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~---~Ln~Ell  410 (690)
T KOG1243|consen  337 KLFKSPDRQIRLLLLQYIEKYIDHLT---KQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR---NLNGELL  410 (690)
T ss_pred             HHhcCcchHHHHHHHHhHHHHhhhcC---HHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh---hhcHHHH
Confidence            99999999999888877766665443   34567789999999999999999999999998887533211   2333445


Q ss_pred             HHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCC-hHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHH
Q 013228          253 PYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGL-IGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKY  331 (447)
Q Consensus       253 ~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~-~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~  331 (447)
                      ..+.++-.+. +..+|....-|++.++......    ...++ .-+..+-+.++-..-|..+.+++..-...-...  . 
T Consensus       411 r~~ar~q~d~-~~~irtntticlgki~~~l~~~----~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~--~-  482 (690)
T KOG1243|consen  411 RYLARLQPDE-HGGIRTNTTICLGKIAPHLAAS----VRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQS--E-  482 (690)
T ss_pred             HHHHhhCccc-cCcccccceeeecccccccchh----hhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchh--h-
Confidence            5555555544 7889999888888887642221    13333 334455566666777888887776655432111  1 


Q ss_pred             HHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhh
Q 013228          332 LVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAE  370 (447)
Q Consensus       332 l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~  370 (447)
                       +...+++.++-+.-+.+..++..+..++..+....++.
T Consensus       483 -va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~  520 (690)
T KOG1243|consen  483 -VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKV  520 (690)
T ss_pred             -hhhhccccccccccCcccchhhHHHHHHHHHHhhhhhh
Confidence             22347888888888999999999998888887765553

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=96.60  E-value=0.021  Score=56.59  Aligned_cols=152  Identities=20%  Similarity=0.175  Sum_probs=114.6

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhc-CCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCC
Q 013228           82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSE-EALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPI  160 (447)
Q Consensus        82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~  160 (447)
                      .++|.|++.....+...+..-+.+|+++..+-|. ...+.+. ..+|-+++.| .-+|..++..+..++.-+....+...
T Consensus       867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~L-s~~D~~v~vstl~~i~~~l~~~~tL~  944 (1030)
T KOG1967|consen  867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQAL-SMPDVIVRVSTLRTIPMLLTESETLQ  944 (1030)
T ss_pred             hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhc-CCCccchhhhHhhhhhHHHHhccccc
Confidence            5788899888876777888888888888876663 2222222 2355566666 77888999999999988887777777


Q ss_pred             hhhHhhhHHHHHHhhccCC---hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHh
Q 013228          161 FDQVRPALPALAQLVHSND---KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI  235 (447)
Q Consensus       161 ~~~~~~~l~~l~~ll~~~~---~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l  235 (447)
                      ......++|.+..+=.+.+   ..+|..|+.++..+.+.-+...-......++..|.+.|.++.--+|..|.++=.+.
T Consensus       945 t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen  945 TEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred             hHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhh
Confidence            7778899999988877665   67899999999999984333222344557889999999999999999998765443

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=96.59  E-value=0.13  Score=44.26  Aligned_cols=108  Identities=24%  Similarity=0.272  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccC-CCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHH
Q 013228          309 IKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC-ADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLV  387 (447)
Q Consensus       309 v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i  387 (447)
                      ....|+..|.-++.- .+..+..+.+...++.++.++.. ..+.++.+++.+|..++-.....             .+.|
T Consensus       107 li~~aL~vLQGl~LL-Hp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N-------------~r~F  172 (257)
T PF08045_consen  107 LIALALRVLQGLCLL-HPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPEN-------------QRDF  172 (257)
T ss_pred             HHHHHHHHHHHHHHc-CchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHH-------------HHHH
Confidence            345566777666655 45667777888999999999954 56788999999998888765543             6789


Q ss_pred             HHhchHHHHHHHhcCC--CHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 013228          388 EEAEGLEKIENLRSHD--NDEIHEKSVKILETYWCGRVAGPQPGN  430 (447)
Q Consensus       388 ~~~~~~~~l~~l~~~~--~~~v~~~a~~~l~~~~~~~~~~~~~~~  430 (447)
                      ++.+|+..+..+..+.  +.+++-+..+.|--|+.++.....++.
T Consensus       173 E~~~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl~~E~~~~~~~~  217 (257)
T PF08045_consen  173 EELNGLSTVCSLLKSKSTDRELRLKCIEFLYFYLMPETPSIPPGS  217 (257)
T ss_pred             HHhCCHHHHHHHHccccccHHHhHHHHHHHHHHHcccCCCCCccc
Confidence            9999999999997654  678999999999988887776655443

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=96.49  E-value=0.31  Score=46.89  Aligned_cols=131  Identities=16%  Similarity=0.182  Sum_probs=86.4

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhH
Q 013228           85 PIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQV  164 (447)
Q Consensus        85 ~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  164 (447)
                      ..++.... .+...++-|+..+.....+-|..++.     ++..++.++ .+.|..++..|...|..+|.+.+    ..+
T Consensus        26 ~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLc-EDed~~iR~~aik~lp~~ck~~~----~~v   94 (556)
T PF05918_consen   26 KEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLC-EDEDVQIRKQAIKGLPQLCKDNP----EHV   94 (556)
T ss_dssp             HHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHH-T-SSHHHHHHHHHHGGGG--T------T-H
T ss_pred             HHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhHHHHHHhHH----HHH
Confidence            33444444 47889999999999999888876555     478899999 78889999999999999998752    345


Q ss_pred             hhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcC---CCCchhHhHHHHHHHH
Q 013228          165 RPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLG---HPSPSVLTRALQTVVN  234 (447)
Q Consensus       165 ~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~---~~~~~v~~~a~~~l~~  234 (447)
                      ..+...|+++|.++++.....+=.+|..+...++.        +.+..+...+.   ..++.+|..++..|..
T Consensus        95 ~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~  159 (556)
T PF05918_consen   95 SKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLRE  159 (556)
T ss_dssp             HHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence            67788899999998877777777777766644332        22333333332   4667789988877743

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.44  E-value=0.08  Score=55.55  Aligned_cols=131  Identities=14%  Similarity=0.104  Sum_probs=95.6

Q ss_pred             HHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCc
Q 013228          143 RIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSP  222 (447)
Q Consensus       143 ~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~  222 (447)
                      ..+.|+...++...+  -.....+.+..++..+..+...+|..|++||+.+...++..   +....+-..+...+.+...
T Consensus       795 ~~a~li~~~la~~r~--f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v---L~~~dvq~~Vh~R~~Dssa  869 (1692)
T KOG1020|consen  795 DDAKLIVFYLAHARS--FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSV---LSRPDVQEAVHGRLNDSSA  869 (1692)
T ss_pred             hhHHHHHHHHHhhhH--HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh---hcCHHHHHHHHHhhccchh
Confidence            345555555554421  11223567778888899999999999999999999876542   2333445556677788889


Q ss_pred             hhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHH
Q 013228          223 SVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSE  284 (447)
Q Consensus       223 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~  284 (447)
                      .||.+|+..+|......++.....     ...+..-+.++ .-.||+.+...+..+|...|+
T Consensus       870 sVREAaldLvGrfvl~~~e~~~qy-----Y~~i~erIlDt-gvsVRKRvIKIlrdic~e~pd  925 (1692)
T KOG1020|consen  870 SVREAALDLVGRFVLSIPELIFQY-----YDQIIERILDT-GVSVRKRVIKILRDICEETPD  925 (1692)
T ss_pred             HHHHHHHHHHhhhhhccHHHHHHH-----HHHHHhhcCCC-chhHHHHHHHHHHHHHHhCCC
Confidence            999999999999988777655543     44666667777 788999999999999986544

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=96.39  E-value=0.39  Score=44.36  Aligned_cols=173  Identities=12%  Similarity=0.110  Sum_probs=107.3

Q ss_pred             hhHHHHHHHHHHHh-cCCCCCCChhhHhhhHHHHHHhhcc-CChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHh
Q 013228          139 LSMLRIATWTLSNF-CAGKPKPIFDQVRPALPALAQLVHS-NDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVEL  216 (447)
Q Consensus       139 ~~~~~~a~~~L~~l-~~~~~~~~~~~~~~~l~~l~~ll~~-~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~l  216 (447)
                      .+-+..|..-|..+ +.+.-.........++-.++..|.+ .++..+.-|++.|..++.+...+...-.+ -.+..+++.
T Consensus       301 a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE-~ai~K~Lea  379 (516)
T KOG2956|consen  301 ASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE-IAICKVLEA  379 (516)
T ss_pred             hhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH-HHHHHHHHH
Confidence            34445565544444 4443333333446677788888887 68888999999999999776543221111 234455555


Q ss_pred             cCCCCchhHhHHHHH-HHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCC
Q 013228          217 LGHPSPSVLTRALQT-VVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAG-NSEHIQAVIDAGL  294 (447)
Q Consensus       217 L~~~~~~v~~~a~~~-l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~  294 (447)
                      -.+..+.+...|... +.-++...+..        .+..+..++.+. +...-..+..++..++.. +.+....++. .+
T Consensus       380 a~ds~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~Ilt~-D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~-di  449 (516)
T KOG2956|consen  380 AKDSQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLILTA-DEPRAVAVIKMLTKLFERLSAEELLNLLP-DI  449 (516)
T ss_pred             HhCCchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHHhcC-cchHHHHHHHHHHHHHhhcCHHHHHHhhh-hh
Confidence            556556555555444 44444444432        122344445455 666666666677777763 3343434444 48


Q ss_pred             hHHHHHHHhcCchhHHHHHHHHHHHhcC
Q 013228          295 IGPLVNLLQNAEFDIKNWAARAISNATF  322 (447)
Q Consensus       295 ~~~L~~~l~~~~~~v~~~a~~aL~~l~~  322 (447)
                      .|.++....+.+..||+.|+.+|..+..
T Consensus       450 aP~~iqay~S~SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  450 APCVIQAYDSTSSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             hhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence            9999999999999999999999988764

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=96.38  E-value=0.036  Score=44.26  Aligned_cols=147  Identities=16%  Similarity=0.131  Sum_probs=96.8

Q ss_pred             ChHHHHHhhcc-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHH
Q 013228          251 ALPYLLGLLIH-NHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQI  329 (447)
Q Consensus       251 ~l~~l~~~l~~-~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~  329 (447)
                      -++.++..|.. ...+++|..+.-++..+..   ...+. ...-+-+.+-..+..++.+-...+..++..+... .++..
T Consensus         4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~---~~~~~-~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~-~~dv~   78 (157)
T PF11701_consen    4 ELDTLLTSLDMLRQPEEVRSHALVILSKLLD---AAREE-FKEKISDFIESLLDEGEMDSLIIAFSALTALFPG-PPDVG   78 (157)
T ss_dssp             CCCHHHHHHHCTTTSCCHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTT-THHHH
T ss_pred             HHHHHHHHhcccCCCHhHHHHHHHHHHHHHH---HhHHH-HHHHHHHHHHHHHccccchhHHHHHHHHHHHhCC-CHHHH
Confidence            45556666654 4378899999999988842   11222 2222333444445555666777888888888776 55555


Q ss_pred             H-HHHHcCChHHHHhhcc--CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHh-cCCCH
Q 013228          330 K-YLVREGCIKPLCDLLL--CADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLR-SHDND  405 (447)
Q Consensus       330 ~-~l~~~~~l~~L~~ll~--~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~-~~~~~  405 (447)
                      . .+...|+++.+..+..  +++..+...++++|..-+....               ++.+....+++.|.++. +++++
T Consensus        79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~---------------~r~~I~~~~~~~L~~~~~~~~~~  143 (157)
T PF11701_consen   79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKS---------------CRTFISKNYVSWLKELYKNSKDD  143 (157)
T ss_dssp             HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHH---------------HHHCCHHHCHHHHHHHTTTCC-H
T ss_pred             HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHH---------------HHHHHHHHHHHHHHHHHccccch
Confidence            4 4457799999999998  7788888888887776553321               45555588899999987 45656


Q ss_pred             H-HHHHHHHHHHH
Q 013228          406 E-IHEKSVKILET  417 (447)
Q Consensus       406 ~-v~~~a~~~l~~  417 (447)
                      . ++-+|.-.|.+
T Consensus       144 ~~ir~~A~v~L~K  156 (157)
T PF11701_consen  144 SEIRVLAAVGLCK  156 (157)
T ss_dssp             H-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            6 78888777654

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=96.33  E-value=0.087  Score=45.20  Aligned_cols=100  Identities=12%  Similarity=0.108  Sum_probs=84.9

Q ss_pred             hHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh
Q 013228          224 VLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQ  303 (447)
Q Consensus       224 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~  303 (447)
                      ....|++.|.-++--++..+..+-....+..++.+|.....+.++..+..+|..+...++.+...+-+.+++..++.+++
T Consensus       107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk  186 (257)
T PF08045_consen  107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK  186 (257)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence            45667888888888888888888889999999999965447899999999999998888999999999999999999999


Q ss_pred             cC--chhHHHHHHHHHHHhcCC
Q 013228          304 NA--EFDIKNWAARAISNATFG  323 (447)
Q Consensus       304 ~~--~~~v~~~a~~aL~~l~~~  323 (447)
                      +.  +.+++.++...|.-....
T Consensus       187 ~~~~~~~~r~K~~EFL~fyl~~  208 (257)
T PF08045_consen  187 SKSTDRELRLKCIEFLYFYLMP  208 (257)
T ss_pred             cccccHHHhHHHHHHHHHHHcc
Confidence            64  678888888888766553

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=96.32  E-value=0.098  Score=50.63  Aligned_cols=229  Identities=15%  Similarity=0.161  Sum_probs=152.4

Q ss_pred             hhhhhccCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 013228           32 TEEVIPFGVVPRFVEFLMRED-YPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVA  110 (447)
Q Consensus        32 ~~~~~~~~~v~~L~~ll~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~  110 (447)
                      .+.++...+++.|+..+..++ ..++..-. .-++.... ..+     .+.++++.|+++...++..+|-..+.-+-+..
T Consensus       286 pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl-~k~~k~ld-~~e-----yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i  358 (690)
T KOG1243|consen  286 PEEIIASKVLPILLAALEFGDAASDFLTPL-FKLGKDLD-EEE-----YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYI  358 (690)
T ss_pred             hHHHHHHHHHHHHHHHhhccccchhhhhHH-HHhhhhcc-ccc-----cccchhhhHHHHhcCcchHHHHHHHHhHHHHh
Confidence            345556667777777766554 12333222 22333332 122     55678999999999999999977666666655


Q ss_pred             cCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHH
Q 013228          111 ADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRAL  190 (447)
Q Consensus       111 ~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l  190 (447)
                      ..   ..+.+.+..+++.+..-+ .+++..+++.++.++..++..-...  ......+..+.++-.+.+..++....-|+
T Consensus       359 ~~---Lt~~~~~d~I~phv~~G~-~DTn~~Lre~Tlksm~~La~kL~~~--~Ln~Ellr~~ar~q~d~~~~irtntticl  432 (690)
T KOG1243|consen  359 DH---LTKQILNDQIFPHVALGF-LDTNATLREQTLKSMAVLAPKLSKR--NLNGELLRYLARLQPDEHGGIRTNTTICL  432 (690)
T ss_pred             hh---cCHHhhcchhHHHHHhhc-ccCCHHHHHHHHHHHHHHHhhhchh--hhcHHHHHHHHhhCccccCcccccceeee
Confidence            43   334555667888888888 7889999999999998888543111  22345566666665567788998888888


Q ss_pred             HHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHH
Q 013228          191 FYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTD  270 (447)
Q Consensus       191 ~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~  270 (447)
                      +.++.......   .+.-...++.+-++++-..-|..+...+.......+.   .-+...+++.+..+..++ +..+|..
T Consensus       433 gki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~---~~va~kIlp~l~pl~vd~-e~~vr~~  505 (690)
T KOG1243|consen  433 GKIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQ---SEVANKILPSLVPLTVDP-EKTVRDT  505 (690)
T ss_pred             cccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhcccccch---hhhhhhccccccccccCc-ccchhhH
Confidence            88886644322   2222344555667777778888888888776655442   234457888888888888 8888888


Q ss_pred             HHHHHHHHhc
Q 013228          271 ACWTISNITA  280 (447)
Q Consensus       271 a~~~l~nl~~  280 (447)
                      |-.++...-.
T Consensus       506 a~~~i~~fl~  515 (690)
T KOG1243|consen  506 AEKAIRQFLE  515 (690)
T ss_pred             HHHHHHHHHh
Confidence            8777766544

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=96.30  E-value=0.048  Score=36.65  Aligned_cols=66  Identities=18%  Similarity=0.265  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcC
Q 013228          268 KTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQ-NAEFDIKNWAARAISNATFGGTHEQIKYLVREG  336 (447)
Q Consensus       268 ~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~  336 (447)
                      .+.+.|+++++++. +.....+.+.++++.++++.. ++...+|-.|..+|+-++.  +.+..+.+.+.|
T Consensus         4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~--T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS--TEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC--CHHHHHHHHHcC
Confidence            57899999999774 466777777899999999988 5678999999999999988  567777766655

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.29  E-value=1  Score=45.84  Aligned_cols=210  Identities=15%  Similarity=0.205  Sum_probs=127.1

Q ss_pred             HhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhc---cccc----hhHHHHHH
Q 013228           79 IDHGAVPIFVKLLAS-----PSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLN---KHAK----LSMLRIAT  146 (447)
Q Consensus        79 ~~~~~i~~L~~ll~~-----~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~---~~~~----~~~~~~a~  146 (447)
                      .+.|++..++.++.+     .........+..|...|.- +.+|+.+.+.++++.++..+.   ....    ..+.+..+
T Consensus       114 ~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL  192 (802)
T PF13764_consen  114 AECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL  192 (802)
T ss_pred             hcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence            346899999998876     2345666666666666655 568888999999999999885   2222    45566666


Q ss_pred             HHHHHhcCCCCCCChh-------------hHhhhHHHHHHhhcc----CChhHHHHHHHHHHHhccCCcHHHHHHHHhCc
Q 013228          147 WTLSNFCAGKPKPIFD-------------QVRPALPALAQLVHS----NDKEVMTDACRALFYLSEGTNDEIQAVIEAGV  209 (447)
Q Consensus       147 ~~L~~l~~~~~~~~~~-------------~~~~~l~~l~~ll~~----~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~  209 (447)
                      .++..+..........             ....-+..++..+.+    .++.+....++.|-+++....+..+.+++.  
T Consensus       193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--  270 (802)
T PF13764_consen  193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--  270 (802)
T ss_pred             HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--
Confidence            5555554332111000             012334555555553    468899999999999998888877766543  


Q ss_pred             HHHHHHhcCC--CCchhHhHHHHHHHHhhcCC------hhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcC
Q 013228          210 CPRLVELLGH--PSPSVLTRALQTVVNIAAGD------DFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAG  281 (447)
Q Consensus       210 ~~~L~~lL~~--~~~~v~~~a~~~l~~l~~~~------~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~  281 (447)
                      +...+++=.-  ....--...+.++..++.+-      ...++.+++.|++...+..|... -+..           ...
T Consensus       271 F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~-~P~~-----------~~~  338 (802)
T PF13764_consen  271 FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKH-FPSL-----------KNT  338 (802)
T ss_pred             HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHh-Cccc-----------ccC
Confidence            2222222111  11111122355566665432      24567788899999888888655 3333           111


Q ss_pred             CHHHHHHHHHcCChHHHHHHHh
Q 013228          282 NSEHIQAVIDAGLIGPLVNLLQ  303 (447)
Q Consensus       282 ~~~~~~~l~~~~~~~~L~~~l~  303 (447)
                      ....+..++....+|.++++|.
T Consensus       339 ~s~eWk~~l~~psLp~iL~lL~  360 (802)
T PF13764_consen  339 DSPEWKEFLSRPSLPYILRLLR  360 (802)
T ss_pred             CCHHHHHHhcCCcHHHHHHHHH
Confidence            2344666777777777777766

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.27  E-value=0.76  Score=46.65  Aligned_cols=211  Identities=15%  Similarity=0.161  Sum_probs=120.0

Q ss_pred             HHhcCCHHHHHHHhcccc----chhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhh----ccCC----hhHHHHHH
Q 013228          120 VLSEEALIPLLTQLNKHA----KLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLV----HSND----KEVMTDAC  187 (447)
Q Consensus       120 ~~~~~~l~~l~~~l~~~~----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll----~~~~----~~v~~~al  187 (447)
                      +.+.|++..++..+....    +.......+..|...+.-..+++.....+.++.|+..+    ....    ..+.+..+
T Consensus       113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL  192 (802)
T PF13764_consen  113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL  192 (802)
T ss_pred             hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence            345678888888885322    34566667777777776654444444467777766655    3434    56777777


Q ss_pred             HHHHHhccCCcHH-HH---HHH--------HhCcHHHHHHhcCC----CCchhHhHHHHHHHHhhcCChhhHHHHHhcCC
Q 013228          188 RALFYLSEGTNDE-IQ---AVI--------EAGVCPRLVELLGH----PSPSVLTRALQTVVNIAAGDDFQTQCIINCGA  251 (447)
Q Consensus       188 ~~l~~l~~~~~~~-~~---~~~--------~~~~~~~L~~lL~~----~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~  251 (447)
                      ..+-.+....... ..   ...        ...-+..+++.+.+    .++.+....+++|..|+.++++..+.+++.  
T Consensus       193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--  270 (802)
T PF13764_consen  193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--  270 (802)
T ss_pred             HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--
Confidence            6666655322110 00   000        11226666776655    457888999999999999999887776652  


Q ss_pred             hHHHHHhhc--cCCchhHHHHHHHHHHHHhcC------CHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCC
Q 013228          252 LPYLLGLLI--HNHKKSIKTDACWTISNITAG------NSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFG  323 (447)
Q Consensus       252 l~~l~~~l~--~~~~~~v~~~a~~~l~nl~~~------~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~  323 (447)
                      +...+++=.  .....+- ...+.+++.++.+      .....+.+++.|++...++++...-|..           ...
T Consensus       271 F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~-----------~~~  338 (802)
T PF13764_consen  271 FKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSL-----------KNT  338 (802)
T ss_pred             HHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCccc-----------ccC
Confidence            122222111  1101111 1224445555432      2355677889999999999988665544           111


Q ss_pred             CCHHHHHHHHHcCChHHHHhhc
Q 013228          324 GTHEQIKYLVREGCIKPLCDLL  345 (447)
Q Consensus       324 ~~~~~~~~l~~~~~l~~L~~ll  345 (447)
                      .+++- +.++....++.++++|
T Consensus       339 ~s~eW-k~~l~~psLp~iL~lL  359 (802)
T PF13764_consen  339 DSPEW-KEFLSRPSLPYILRLL  359 (802)
T ss_pred             CCHHH-HHHhcCCcHHHHHHHH
Confidence            23333 3334455566665555

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=96.24  E-value=0.52  Score=43.58  Aligned_cols=275  Identities=18%  Similarity=0.139  Sum_probs=138.3

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-CCH-HHHHHHHHHHHHhhcCChhHHH
Q 013228           41 VPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLAS-PSD-DIREQAVCALGNVAADSARCRD  118 (447)
Q Consensus        41 v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~-~i~~~a~~~L~~l~~~~~~~~~  118 (447)
                      +..++.-+.+.....+|..++--|+.-+. +++++..+..+|..+.++..+.+ ++. ...-.++.++.-++.+.. .-.
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~~  100 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NMH  100 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-chh
Confidence            55566666644446889988888888888 89999999999999999999855 333 333344444455555443 233


Q ss_pred             HHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhc---------cCChhHHHHHHHH
Q 013228          119 LVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVH---------SNDKEVMTDACRA  189 (447)
Q Consensus       119 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~---------~~~~~v~~~al~~  189 (447)
                      .+.....+..++.++.-.....+.....      ... ..............+...+.         .....-+..++.+
T Consensus       101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~-~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~  173 (361)
T PF07814_consen  101 LLLDRDSLRLLLKLLKVDKSLDVPSDSD------SSR-KKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLA  173 (361)
T ss_pred             hhhchhHHHHHHHHhccccccccccchh------hhh-hhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence            3334445555566663000000000000      000 00000000111111111110         1112223333333


Q ss_pred             HHHhc--------------cCCcHHHHHHHHhCcHHHHHHhcC----CC-------C-----chhHhHHHHHHHHhhcCC
Q 013228          190 LFYLS--------------EGTNDEIQAVIEAGVCPRLVELLG----HP-------S-----PSVLTRALQTVVNIAAGD  239 (447)
Q Consensus       190 l~~l~--------------~~~~~~~~~~~~~~~~~~L~~lL~----~~-------~-----~~v~~~a~~~l~~l~~~~  239 (447)
                      +-.++              ...+...+.+...|++..++..+.    ..       .     ......++++|-+.+..+
T Consensus       174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~  253 (361)
T PF07814_consen  174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS  253 (361)
T ss_pred             HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence            33331              011122334556678888888874    11       1     123455788888887666


Q ss_pred             hhhHHHHHhc--CChHHHHH-hhccC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-----------
Q 013228          240 DFQTQCIINC--GALPYLLG-LLIHN--HKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQ-----------  303 (447)
Q Consensus       240 ~~~~~~~~~~--~~l~~l~~-~l~~~--~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~-----------  303 (447)
                      +.........  +.+..+.. ++...  ....+...++..+.|+..++++.+..+...++...+..+..           
T Consensus       254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~  333 (361)
T PF07814_consen  254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNY  333 (361)
T ss_pred             ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhccccccccc
Confidence            6544444432  23333322 22222  03344567788888998877776666655433222211111           


Q ss_pred             ---cCchhHHHHHHHHHHHhcCCC
Q 013228          304 ---NAEFDIKNWAARAISNATFGG  324 (447)
Q Consensus       304 ---~~~~~v~~~a~~aL~~l~~~~  324 (447)
                         ....+...-+..++.|++...
T Consensus       334 ~~~~~~~D~~IL~Lg~LINL~E~s  357 (361)
T PF07814_consen  334 VPEESSFDILILALGLLINLVEHS  357 (361)
T ss_pred             ccccccchHHHHHHHhHHHheeeC
Confidence               122455667777777777653

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=96.11  E-value=0.0083  Score=32.80  Aligned_cols=28  Identities=39%  Similarity=0.759  Sum_probs=25.1

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 013228           84 VPIFVKLLASPSDDIREQAVCALGNVAA  111 (447)
Q Consensus        84 i~~L~~ll~~~~~~i~~~a~~~L~~l~~  111 (447)
                      +|.+++++.++++++|..|+++|+.++.
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            6889999999999999999999999874

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=96.07  E-value=0.66  Score=42.88  Aligned_cols=275  Identities=17%  Similarity=0.157  Sum_probs=140.9

Q ss_pred             hHHHHHhhC-CCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHH-hcCCCCCCCh
Q 013228           84 VPIFVKLLA-SPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSN-FCAGKPKPIF  161 (447)
Q Consensus        84 i~~L~~ll~-~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~-l~~~~~~~~~  161 (447)
                      ++.++.-+. +.+..+|+.++--|+.-|.+ +.++..+...|....++..+....+......++.++.. ++.+......
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l  101 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL  101 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence            455665555 35678899998888888876 45888999999999999999554444355554444444 4444333333


Q ss_pred             hhHhhhHHHHHHhhccC-ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhc---------CCCCchhHhHHHHH
Q 013228          162 DQVRPALPALAQLVHSN-DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELL---------GHPSPSVLTRALQT  231 (447)
Q Consensus       162 ~~~~~~l~~l~~ll~~~-~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL---------~~~~~~v~~~a~~~  231 (447)
                      .........++.++.-. ...+....-      .... ....... ......+...+         ......-+..|+.+
T Consensus       102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~-~~lsk~~-~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~  173 (361)
T PF07814_consen  102 LLDRDSLRLLLKLLKVDKSLDVPSDSD------SSRK-KNLSKVQ-QKSRSLCKELLSSGSSWKSPKPPELSPQTLALLA  173 (361)
T ss_pred             hhchhHHHHHHHHhccccccccccchh------hhhh-hhhhHHH-HHHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence            33455566666666611 000000000      0000 0000010 01122122222         01223445566666


Q ss_pred             HHHhhc--------------CChhhHHHHHhcCChHHHHHhhcc----C------C-----chhHHHHHHHHHHHHhcCC
Q 013228          232 VVNIAA--------------GDDFQTQCIINCGALPYLLGLLIH----N------H-----KKSIKTDACWTISNITAGN  282 (447)
Q Consensus       232 l~~l~~--------------~~~~~~~~~~~~~~l~~l~~~l~~----~------~-----~~~v~~~a~~~l~nl~~~~  282 (447)
                      +-.++.              ..+...+.+.+.|+++.++..+..    .      .     +...-..+..+|-+.+..+
T Consensus       174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~  253 (361)
T PF07814_consen  174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS  253 (361)
T ss_pred             HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence            666631              112234455667788888888752    1      0     1112234556666766655


Q ss_pred             HHHHHHHHH--cCChHHHHHHH-h---cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHH---HHhh----ccC--
Q 013228          283 SEHIQAVID--AGLIGPLVNLL-Q---NAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKP---LCDL----LLC--  347 (447)
Q Consensus       283 ~~~~~~l~~--~~~~~~L~~~l-~---~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~---L~~l----l~~--  347 (447)
                      +++..+++.  .+.++.+...+ .   .........++..+.|++.+ ++..+..+...++...   +...    +..  
T Consensus       254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~-n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~  332 (361)
T PF07814_consen  254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNN-NPSACEEFASPKLGQQLGLIVTSFFCVLSLPN  332 (361)
T ss_pred             ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCC-CccchHhhhhhHhccchHHHHHhhcccccccc
Confidence            555555553  23333333322 2   23345567888899999876 4444444443322221   1111    110  


Q ss_pred             -----CCHHHHHHHHHHHHHHHHhhh
Q 013228          348 -----ADPEIVTVFLKGLEKILKVGE  368 (447)
Q Consensus       348 -----~~~~~~~~a~~~l~~l~~~~~  368 (447)
                           ..-++...+++++.|+++.++
T Consensus       333 ~~~~~~~~D~~IL~Lg~LINL~E~s~  358 (361)
T PF07814_consen  333 YVPEESSFDILILALGLLINLVEHSE  358 (361)
T ss_pred             cccccccchHHHHHHHhHHHheeeCc
Confidence                 112567778888888887654

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=96.06  E-value=0.012  Score=32.10  Aligned_cols=29  Identities=34%  Similarity=0.398  Sum_probs=25.6

Q ss_pred             hHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 013228          167 ALPALAQLVHSNDKEVMTDACRALFYLSE  195 (447)
Q Consensus       167 ~l~~l~~ll~~~~~~v~~~al~~l~~l~~  195 (447)
                      ++|.+.+++++++++||..++.+|+.+++
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            47899999999999999999999998874

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=96.02  E-value=0.23  Score=48.06  Aligned_cols=178  Identities=15%  Similarity=0.175  Sum_probs=123.0

Q ss_pred             hHHHHHHhhcc----CChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcC-CCCchhHhHHHHHHHHhhcCChh
Q 013228          167 ALPALAQLVHS----NDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLG-HPSPSVLTRALQTVVNIAAGDDF  241 (447)
Q Consensus       167 ~l~~l~~ll~~----~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~v~~~a~~~l~~l~~~~~~  241 (447)
                      .-|.+.....+    +|+.++..|--+|..+..-+.+...     .-+|.++..+. +++|.+|..|.-.++.++.....
T Consensus       893 F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~  967 (1128)
T COG5098         893 FKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT  967 (1128)
T ss_pred             hhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehhh
Confidence            33445555443    6889998888888776644433222     34788999986 79999999999999988755443


Q ss_pred             hHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhc
Q 013228          242 QTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNAT  321 (447)
Q Consensus       242 ~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~  321 (447)
                      ..+.     .-..|.+-|.+. +..||+.+..++.++...+     .+--.|-++.+..+|.++|..+...|-..+..++
T Consensus       968 ~~de-----~t~yLyrrL~De-~~~V~rtclmti~fLilag-----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a 1036 (1128)
T COG5098         968 TADE-----HTHYLYRRLGDE-DADVRRTCLMTIHFLILAG-----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIA 1036 (1128)
T ss_pred             hhHH-----HHHHHHHHhcch-hhHHHHHHHHHHHHHHHcc-----ceeeccchhhhHhhccCCcchHHHHHHHHHHHHH
Confidence            3332     334677778888 9999999999999987643     1223678899999999999999999999999998


Q ss_pred             CCCCHHHHHHHHHcCChHHHHhhccC---CCHHHHHHHHHHHHHHHHhh
Q 013228          322 FGGTHEQIKYLVREGCIKPLCDLLLC---ADPEIVTVFLKGLEKILKVG  367 (447)
Q Consensus       322 ~~~~~~~~~~l~~~~~l~~L~~ll~~---~~~~~~~~a~~~l~~l~~~~  367 (447)
                      ...+.      .-+|+++..-.+-.+   ++.+ -...++.|..++...
T Consensus      1037 ~KdNt------~yn~fidifs~ls~~ae~g~e~-fk~II~FLt~fI~ke 1078 (1128)
T COG5098        1037 KKDNT------MYNGFIDIFSTLSSDAENGQEP-FKLIIGFLTDFISKE 1078 (1128)
T ss_pred             hcccc------hhhhhHHHHHHcCchhhcCCCc-HHHHHHHHHHHHHHH
Confidence            86543      223555554444432   2222 345566666666543

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=95.91  E-value=1.1  Score=41.60  Aligned_cols=192  Identities=16%  Similarity=0.243  Sum_probs=116.3

Q ss_pred             HHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHH---HhcCCC--CCCChhhHhhhHHHHHHhh
Q 013228          101 QAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLS---NFCAGK--PKPIFDQVRPALPALAQLV  175 (447)
Q Consensus       101 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~---~l~~~~--~~~~~~~~~~~l~~l~~ll  175 (447)
                      .|+.+|-.+....+..-..+.+.+++..+++.+...-+        .++.   .-..+.  +......   .+.  ...+
T Consensus         3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~--------~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~i   69 (379)
T PF06025_consen    3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVD--------FALEENKNEEAGSGIPPEYKES---SVD--GYSI   69 (379)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHH--------HHHhcccccCCCCCCCCCcccc---ccc--cccc
Confidence            35566666665555555667788999999998832111        1111   111010  0000000   000  0000


Q ss_pred             ccCChhHHHHHHHHHHHhcc---CCcHHHHHHHH-hCcHHHHHHhcCCCC---chhHhHHHHHHHHhhcCChhhHHHHHh
Q 013228          176 HSNDKEVMTDACRALFYLSE---GTNDEIQAVIE-AGVCPRLVELLGHPS---PSVLTRALQTVVNIAAGDDFQTQCIIN  248 (447)
Q Consensus       176 ~~~~~~v~~~al~~l~~l~~---~~~~~~~~~~~-~~~~~~L~~lL~~~~---~~v~~~a~~~l~~l~~~~~~~~~~~~~  248 (447)
                      ........+..++.+..+..   ......+.+.+ ..+...|..++.+..   +.+...|+.++..+....|.....+.+
T Consensus        70 ~~~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e  149 (379)
T PF06025_consen   70 SYQRQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQE  149 (379)
T ss_pred             CHHHHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHH
Confidence            00112223333444444443   33344455666 566677777777654   567888999999999999988888999


Q ss_pred             cCChHHHHHhhc-cC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCc
Q 013228          249 CGALPYLLGLLI-HN--HKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAE  306 (447)
Q Consensus       249 ~~~l~~l~~~l~-~~--~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~  306 (447)
                      .|+.+.+++.+. ..  .+.++-...-.+++.+|.+ ....+.+.+.+.++.+++++.+++
T Consensus       150 ~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN-~~Gl~~~~~~~~l~~~f~if~s~~  209 (379)
T PF06025_consen  150 AGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLN-NRGLEKVKSSNPLDKLFEIFTSPD  209 (379)
T ss_pred             cCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcC-HHHHHHHHhcChHHHHHHHhCCHH
Confidence            999999999887 32  2456666666677777765 477888889999999999988654

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.91  E-value=2.3  Score=43.04  Aligned_cols=175  Identities=17%  Similarity=0.186  Sum_probs=111.5

Q ss_pred             HHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHH--HHHHHHHcCChHHHHHHHhcC-ch
Q 013228          231 TVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSE--HIQAVIDAGLIGPLVNLLQNA-EF  307 (447)
Q Consensus       231 ~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~--~~~~l~~~~~~~~L~~~l~~~-~~  307 (447)
                      ++++++..++..++.+++.+++..+.+.++.-....+...+...++|++...+.  .......... ..+..++..- +.
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~-~~f~~~~~~w~~~  572 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDF-SVFKVLLNKWDSI  572 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH-HHHHHHHhhcchh
Confidence            888999999999999999999999999998655788999999999999874321  1111111111 1222233322 33


Q ss_pred             hHHHHHHHHHHHhcCCCCH--------HHHHHHH--------------HcCChHH-HHhhccC-CCHHHHHHHHHHHHHH
Q 013228          308 DIKNWAARAISNATFGGTH--------EQIKYLV--------------REGCIKP-LCDLLLC-ADPEIVTVFLKGLEKI  363 (447)
Q Consensus       308 ~v~~~a~~aL~~l~~~~~~--------~~~~~l~--------------~~~~l~~-L~~ll~~-~~~~~~~~a~~~l~~l  363 (447)
                      +.-..|+..|..+...+++        .....+.              ....+.+ +..++.. ..+..+.+|++++.++
T Consensus       573 ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~  652 (699)
T KOG3665|consen  573 ERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNV  652 (699)
T ss_pred             hHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHH
Confidence            6666777777777664321        0001111              1112333 4444443 4557788999999999


Q ss_pred             HHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhc-CCCHHHHHHHHHHHHHhc
Q 013228          364 LKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRS-HDNDEIHEKSVKILETYW  419 (447)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~-~~~~~v~~~a~~~l~~~~  419 (447)
                      +....+             ++..+.+.|++..+.++.. +...+++..+..++..+.
T Consensus       653 ~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  696 (699)
T KOG3665|consen  653 LEQNKE-------------YCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESCE  696 (699)
T ss_pred             HHcChh-------------hhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhccc
Confidence            876544             4777888999999988732 236667777777776553

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=95.89  E-value=0.22  Score=50.34  Aligned_cols=196  Identities=13%  Similarity=0.069  Sum_probs=134.1

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhH
Q 013228           85 PIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQV  164 (447)
Q Consensus        85 ~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  164 (447)
                      +.+..-+.+++..-|..++..+........ ........+.+-.++.....+.+..+...++.+|..++...........
T Consensus       256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~  334 (815)
T KOG1820|consen  256 KNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA  334 (815)
T ss_pred             hHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence            444445556778888888888888775544 1111112233455555555677888888899999999977655555566


Q ss_pred             hhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCCh-hhH
Q 013228          165 RPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD-FQT  243 (447)
Q Consensus       165 ~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~-~~~  243 (447)
                      ..++|.++.-+......++..++.++..++....       -....+.+...+.+.++.++..+...+.......+ ...
T Consensus       335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~  407 (815)
T KOG1820|consen  335 KNVFPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV  407 (815)
T ss_pred             HhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence            8889999999998888888887777766654211       11356888899999999999998888887765444 111


Q ss_pred             HHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc-CCHHHHHHH
Q 013228          244 QCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA-GNSEHIQAV  289 (447)
Q Consensus       244 ~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l  289 (447)
                      ..-.-.+.++.++....+. +..||..|..+++-+.. .+.+....+
T Consensus       408 ~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k~~Ge~~~~k~  453 (815)
T KOG1820|consen  408 EKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMKVHGEEVFKKL  453 (815)
T ss_pred             chhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            1111235788888888888 99999999988887765 333444433

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=95.75  E-value=1.5  Score=39.95  Aligned_cols=171  Identities=18%  Similarity=0.168  Sum_probs=122.8

Q ss_pred             HHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHc-CC-hHHHHHHHhc-----Cc--------h
Q 013228          244 QCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA-GNSEHIQAVIDA-GL-IGPLVNLLQN-----AE--------F  307 (447)
Q Consensus       244 ~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~-~~-~~~L~~~l~~-----~~--------~  307 (447)
                      +.+++.. ++.+.+.|.+. ...+...+...+..++. .+......+.+. ++ .+.+-.++..     ++        +
T Consensus        51 ~~iL~~~-~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~  128 (330)
T PF11707_consen   51 RSILQNH-LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKP  128 (330)
T ss_pred             HHHHHHH-HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCc
Confidence            3444443 78889999888 77788889999999988 666666676652 22 3444444431     11        2


Q ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHHH-cCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHH
Q 013228          308 DIKNWAARAISNATFGGTHEQIKYLVR-EGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQL  386 (447)
Q Consensus       308 ~v~~~a~~aL~~l~~~~~~~~~~~l~~-~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  386 (447)
                      .+|...+..+..+...+++.....+++ .+.+..+...+...+++++...+..+..-+-.++..+..         ....
T Consensus       129 siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~---------~K~~  199 (330)
T PF11707_consen  129 SIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRS---------TKCK  199 (330)
T ss_pred             CHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChh---------hhhh
Confidence            899999999999998888877766665 567888999999988899999999998654443332211         2333


Q ss_pred             HHHhchHHHHHHHhcCCCH----HHHHHHHHHHHHhcCCCCCC
Q 013228          387 VEEAEGLEKIENLRSHDND----EIHEKSVKILETYWCGRVAG  425 (447)
Q Consensus       387 i~~~~~~~~l~~l~~~~~~----~v~~~a~~~l~~~~~~~~~~  425 (447)
                      +-....+..|..+...+.+    .+.+.+.+.+..++.+-...
T Consensus       200 ~fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~~G  242 (330)
T PF11707_consen  200 LFNEWTLSQLASLYSRDGEDEKSSVADLVHEFLLALCTDPKHG  242 (330)
T ss_pred             hcCHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHhcCCCcc
Confidence            3346688899999888888    89999999999988654433

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=95.68  E-value=2.9  Score=42.61  Aligned_cols=128  Identities=14%  Similarity=0.140  Sum_probs=68.8

Q ss_pred             hHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh
Q 013228          224 VLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQ  303 (447)
Q Consensus       224 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~  303 (447)
                      ++..+.-+++++|-.++...+     ..+|.+++-|.......+|.+.+.+++.+|..-     ...-...+|.+...|.
T Consensus       947 vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y-----Tam~d~YiP~I~~~L~ 1016 (1529)
T KOG0413|consen  947 VRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY-----TAMTDRYIPMIAASLC 1016 (1529)
T ss_pred             HHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH-----HHHHHHhhHHHHHHhc
Confidence            344444455555543332222     244555555544334455555555555554421     1122236777777788


Q ss_pred             cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCh-HHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 013228          304 NAEFDIKNWAARAISNATFGGTHEQIKYLVREGCI-KPLCDLLLCADPEIVTVFLKGLEKILKVG  367 (447)
Q Consensus       304 ~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l-~~L~~ll~~~~~~~~~~a~~~l~~l~~~~  367 (447)
                      ++++-+|+.+...|.++...+      ++-..|.+ -.++--+-+.+++++..+--++..++...
T Consensus      1017 Dp~~iVRrqt~ilL~rLLq~~------~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1017 DPSVIVRRQTIILLARLLQFG------IVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSE 1075 (1529)
T ss_pred             CchHHHHHHHHHHHHHHHhhh------hhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhc
Confidence            888888888888888887632      22223332 12333334456677777777777776643

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=95.65  E-value=1.4  Score=38.70  Aligned_cols=204  Identities=10%  Similarity=0.038  Sum_probs=139.0

Q ss_pred             HHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCCh---hhH---hhhHHHHHHhhccCChhHHHHHHHHHH
Q 013228          118 DLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIF---DQV---RPALPALAQLVHSNDKEVMTDACRALF  191 (447)
Q Consensus       118 ~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~---~~~---~~~l~~l~~ll~~~~~~v~~~al~~l~  191 (447)
                      ..+...|.+..++..+ ..-+-+.+..++.+..++-+..-....   ...   ..++..++.--.. .+++.-.+-..+.
T Consensus        73 qef~~~~~l~~lI~~l-~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlr  150 (342)
T KOG1566|consen   73 QEFYNADVLSLLIQHL-PKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLR  150 (342)
T ss_pred             HHHHhCCchHHHHHhh-hcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHH
Confidence            3456778899999998 677778888899998888776521111   111   2333333333111 2455444444444


Q ss_pred             HhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCC----hHHHHHhhccCCchhH
Q 013228          192 YLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGA----LPYLLGLLIHNHKKSI  267 (447)
Q Consensus       192 ~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~----l~~l~~~l~~~~~~~v  267 (447)
                      ....+ +...+.+..+.-+......+..+.-++...|..+...+..........++..+.    .+.--.++.++ +.-.
T Consensus       151 Ecirh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~-Nyvt  228 (342)
T KOG1566|consen  151 ECIRH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSE-NYVT  228 (342)
T ss_pred             HHHhh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccc-ceeh
Confidence            44433 334456677777888888888888899999999998887766655555555433    34466677888 9999


Q ss_pred             HHHHHHHHHHHhcCCH--HH-HHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCC
Q 013228          268 KTDACWTISNITAGNS--EH-IQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGT  325 (447)
Q Consensus       268 ~~~a~~~l~nl~~~~~--~~-~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~  325 (447)
                      ++.+...++.+..+.+  .. .+++-...-+..++.+|..+...++.+|.....-+..+.+
T Consensus       229 krqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpn  289 (342)
T KOG1566|consen  229 KRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPN  289 (342)
T ss_pred             HHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCC
Confidence            9999999998876432  22 2333334568899999999999999999999988877543

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=95.62  E-value=0.13  Score=41.09  Aligned_cols=147  Identities=10%  Similarity=0.025  Sum_probs=86.6

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHH
Q 013228           39 GVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRD  118 (447)
Q Consensus        39 ~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~  118 (447)
                      .+++.|.++|+.+.+..+|.+++++|+.+-.-+|...+.+....  +.-  .-.............. .......+    
T Consensus        10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~--~~~--~~~~~~~~~~~~~l~~-~~~~~~~e----   80 (160)
T PF11865_consen   10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL--DSK--SSENSNDESTDISLPM-MGISPSSE----   80 (160)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC--Ccc--ccccccccchhhHHhh-ccCCCchH----
Confidence            36788899998886689999999999999886665444222211  100  0011111222221111 11111111    


Q ss_pred             HHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhc
Q 013228          119 LVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLS  194 (447)
Q Consensus       119 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~  194 (447)
                      ...-.-++..|+..|+..+-..-...+..++.++..............++|.++..++..++..++..+.-|+.+.
T Consensus        81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV  156 (160)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            2222335778888885444344445567777777655444556677899999999999777788777766665553

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=95.51  E-value=2.5  Score=40.71  Aligned_cols=252  Identities=13%  Similarity=0.065  Sum_probs=131.1

Q ss_pred             HHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHH
Q 013228           10 NNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVK   89 (447)
Q Consensus        10 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~   89 (447)
                      .+.|..+...+..++.+. . ..-...+    ..+.+.+..+..++.-..-+.+|..++.+..+.  ...+.++.+.|..
T Consensus        43 ~e~R~~~~~ll~~~i~~~-~-~~~~~~R----~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~  114 (464)
T PF11864_consen   43 SEARRAALELLIACIKRQ-D-SSSGLMR----AEFFRDISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLLS  114 (464)
T ss_pred             HHHHHHHHHHHHHHHHcc-c-cccHHHH----HHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHHH
Confidence            456666666666666653 1 1111111    112222333322443444555666666644443  2245566777766


Q ss_pred             hhCCC---------------------------CHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHH
Q 013228           90 LLASP---------------------------SDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSML  142 (447)
Q Consensus        90 ll~~~---------------------------~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~  142 (447)
                      .+..-                           +.......+..+.|+...+...-+.-.-.+.+..++.+.....+....
T Consensus       115 wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di  194 (464)
T PF11864_consen  115 WLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDI  194 (464)
T ss_pred             HHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHH
Confidence            65320                           122233444555555543322111111123455555555445555556


Q ss_pred             HHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC---
Q 013228          143 RIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH---  219 (447)
Q Consensus       143 ~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~---  219 (447)
                      +.++.++-.+..+. .........++..|.......  +....+-.++.|++......       ..+..|..+|.+   
T Consensus       195 ~~~L~vldaii~y~-~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~  264 (464)
T PF11864_consen  195 EACLSVLDAIITYG-DIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDP  264 (464)
T ss_pred             HHHHHHHHHHHHcC-cCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCc
Confidence            66776666666554 333333344555555443322  56666777888888543322       235677777732   


Q ss_pred             ---CCchhHhHHHHHHHHhhcCChhh-HHHHHhcC--ChHHHHHhhccCCchhHHHHHHHHHHHHhc
Q 013228          220 ---PSPSVLTRALQTVVNIAAGDDFQ-TQCIINCG--ALPYLLGLLIHNHKKSIKTDACWTISNITA  280 (447)
Q Consensus       220 ---~~~~v~~~a~~~l~~l~~~~~~~-~~~~~~~~--~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~  280 (447)
                         .+..+.+-|+..+..+..+.... ...+--.-  +++.+...++.+ +..+-.+....+.++..
T Consensus       265 ~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~~i~~ll~  330 (464)
T PF11864_consen  265 QNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILLLINRLLD  330 (464)
T ss_pred             cccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHHHHHHHHh
Confidence               23455667888888887655221 11111122  677888888877 77777777777777763

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=95.39  E-value=0.68  Score=42.79  Aligned_cols=131  Identities=18%  Similarity=0.182  Sum_probs=77.0

Q ss_pred             hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHH-hc--CCCCchhHhHHHHHHHHhhcCChh------------hHH
Q 013228          180 KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVE-LL--GHPSPSVLTRALQTVVNIAAGDDF------------QTQ  244 (447)
Q Consensus       180 ~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~-lL--~~~~~~v~~~a~~~l~~l~~~~~~------------~~~  244 (447)
                      ..-+..|+..+..++.........++. +.+..++. .-  ...++.-+..|+..++.++.....            ...
T Consensus       225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~-~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~  303 (370)
T PF08506_consen  225 DTRRRAACDFLRSLCKKFEKQVTSILM-QYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVV  303 (370)
T ss_dssp             -SHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred             CCcHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHH
Confidence            556777888888888543322221111 12222222 11  235677788899999999864421            123


Q ss_pred             HHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHH
Q 013228          245 CIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAI  317 (447)
Q Consensus       245 ~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL  317 (447)
                      .+....++|-|.  -..+..+-++..|++.+...-..-+.  +.+..  ++|.++..|.+++.-|...|+.++
T Consensus       304 ~Ff~~~v~peL~--~~~~~~piLka~aik~~~~Fr~~l~~--~~l~~--~~~~l~~~L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  304 DFFSQHVLPELQ--PDVNSHPILKADAIKFLYTFRNQLPK--EQLLQ--IFPLLVNHLQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             HHHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGGS-H--HHHHH--HHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred             HHHHHHhHHHhc--ccCCCCcchHHHHHHHHHHHHhhCCH--HHHHH--HHHHHHHHhCCCCcchhhhhhhhC
Confidence            344455556554  12222778999999999988664322  22222  799999999999999999998775

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=95.38  E-value=0.51  Score=38.46  Aligned_cols=141  Identities=16%  Similarity=0.146  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHcCC-Chh----hHHHHHhC------CCh-HHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhc
Q 013228           56 LQFEAAWALKNIVSG-TSE----DTKVVIDH------GAV-PIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSE  123 (447)
Q Consensus        56 v~~~a~~~L~~l~~~-~~~----~~~~~~~~------~~i-~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~  123 (447)
                      +|..|+.+|..++.. ++.    +...+.-.      +.- ..+..++.++++.+|..|+.++..+-.+...+-....+.
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~   81 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES   81 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence            577777888777774 211    11111111      123 334446678899999999999999987654432222111


Q ss_pred             C----C---------------HHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCCh--hhHhhhHHHHHHhhccCChhH
Q 013228          124 E----A---------------LIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIF--DQVRPALPALAQLVHSNDKEV  182 (447)
Q Consensus       124 ~----~---------------l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~~~l~~l~~ll~~~~~~v  182 (447)
                      +    .               -..|+..|....+..+....+.++..+....|..+.  .....++..+..++.+.|.++
T Consensus        82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v  161 (182)
T PF13251_consen   82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV  161 (182)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence            1    1               223444454556778888999999999988754443  344677777788888999999


Q ss_pred             HHHHHHHHHHhccC
Q 013228          183 MTDACRALFYLSEG  196 (447)
Q Consensus       183 ~~~al~~l~~l~~~  196 (447)
                      +..++.+++.+...
T Consensus       162 ~v~~l~~~~~l~s~  175 (182)
T PF13251_consen  162 RVAALSCLGALLSV  175 (182)
T ss_pred             HHHHHHHHHHHHcC
Confidence            99999998877743

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=95.36  E-value=1.9  Score=40.69  Aligned_cols=261  Identities=14%  Similarity=0.111  Sum_probs=141.2

Q ss_pred             HHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-
Q 013228           15 EATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLAS-   93 (447)
Q Consensus        15 ~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-   93 (447)
                      -....|..+.........+..+....+..|+.++.+++ +.-|.....+|..+-......|..+.. .+...+.+++.. 
T Consensus       109 ~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D-~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~  186 (409)
T PF01603_consen  109 LVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPD-PRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYET  186 (409)
T ss_dssp             HHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCc
Confidence            34445555554432222555677778999999999999 999999999999887655566665554 355666666654 


Q ss_pred             CCHHHHHHHHHHHHHhhcCCh-hHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHH
Q 013228           94 PSDDIREQAVCALGNVAADSA-RCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALA  172 (447)
Q Consensus        94 ~~~~i~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~  172 (447)
                      ....-...++..++.+..+-. +.++.-.. -....++.+.+...-.........++..+...++.    ....++..++
T Consensus       187 ~~~~gI~elLeil~sii~gf~~plk~eh~~-fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~----l~~~~i~~ll  261 (409)
T PF01603_consen  187 ERHNGIAELLEILGSIINGFAVPLKEEHKQ-FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPS----LAEPVIKGLL  261 (409)
T ss_dssp             S--STHHHHHHHHHHHHTT--SS--HHHHH-HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GG----GHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHHHhccCCCCcHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch----hHHHHHHHHH
Confidence            345556677777777765321 11111000 00122333332222233344455555555543321    1223333333


Q ss_pred             HhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhc--C
Q 013228          173 QLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINC--G  250 (447)
Q Consensus       173 ~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~--~  250 (447)
                      +.=-..++.-..--+.-+..+...-+...-.-+...++..+...+.+++..|.+.|+..+.|     +.....+.+.  .
T Consensus       262 k~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n-----~~~~~li~~~~~~  336 (409)
T PF01603_consen  262 KHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN-----EYFLSLISQNSRV  336 (409)
T ss_dssp             HHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS-----HHHHHHHHCTHHH
T ss_pred             HhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC-----HHHHHHHHhChHH
Confidence            33334455545555556666654433221112233467788888899999999888876542     3222222111  2


Q ss_pred             ChHHHHHhhc-----cCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 013228          251 ALPYLLGLLI-----HNHKKSIKTDACWTISNITAGNSEHIQA  288 (447)
Q Consensus       251 ~l~~l~~~l~-----~~~~~~v~~~a~~~l~nl~~~~~~~~~~  288 (447)
                      +++.+...+.     |- +..++..|..++..+..-+++....
T Consensus       337 i~p~i~~~L~~~~~~HW-n~~Vr~~a~~vl~~l~~~d~~lf~~  378 (409)
T PF01603_consen  337 ILPIIFPALYRNSKNHW-NQTVRNLAQNVLKILMEMDPKLFDK  378 (409)
T ss_dssp             HHHHHHHHHSSTTSS-S-STTHHHHHHHHHHHHHTTSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            4566666553     34 7789999999999888776664444

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=95.33  E-value=0.23  Score=46.94  Aligned_cols=150  Identities=13%  Similarity=0.155  Sum_probs=98.3

Q ss_pred             ccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHh-hcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228            3 AGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEF-LMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH   81 (447)
Q Consensus         3 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~l-l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (447)
                      +++.+.|+-++..++..+..--.+..        ..|++..|+.. .++.+ ++||+.|+-+|+-+|..++.        
T Consensus       523 ell~d~ds~lRy~G~fs~alAy~GTg--------n~~vv~~lLh~avsD~n-DDVrRAAViAlGfvc~~D~~--------  585 (926)
T COG5116         523 ELLYDKDSILRYNGVFSLALAYVGTG--------NLGVVSTLLHYAVSDGN-DDVRRAAVIALGFVCCDDRD--------  585 (926)
T ss_pred             HHhcCchHHhhhccHHHHHHHHhcCC--------cchhHhhhheeecccCc-hHHHHHHHHheeeeEecCcc--------
Confidence            35677778888888877776555531        24678888887 55666 89999999999998885543        


Q ss_pred             CChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCC
Q 013228           82 GAVPIFVKLLA-SPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPI  160 (447)
Q Consensus        82 ~~i~~L~~ll~-~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~  160 (447)
                       .+...+++|. +.++.+|...+.+|+-.|...-..        .-..++.-|..+++.-+++.|+-++.-+.......-
T Consensus       586 -~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~--------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~L  656 (926)
T COG5116         586 -LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK--------VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPEL  656 (926)
T ss_pred             -hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH--------HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCccc
Confidence             4555666665 468999999999999888654321        112233334366666788888888877765542322


Q ss_pred             hhhHhhhHHHHHHhhccC
Q 013228          161 FDQVRPALPALAQLVHSN  178 (447)
Q Consensus       161 ~~~~~~~l~~l~~ll~~~  178 (447)
                      .....++...+.+.+.+.
T Consensus       657 np~v~~I~k~f~~vI~~K  674 (926)
T COG5116         657 NPNVKRIIKKFNRVIVDK  674 (926)
T ss_pred             ChhHHHHHHHHHHHHhhh
Confidence            333455555555555543

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=95.33  E-value=0.11  Score=50.22  Aligned_cols=133  Identities=16%  Similarity=0.133  Sum_probs=100.1

Q ss_pred             CCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhc-cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHH
Q 013228          220 PSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLI-HNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPL  298 (447)
Q Consensus       220 ~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~-~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L  298 (447)
                      .++.++..|.-+|..+.+-+...+.     .-+|.++..+. ++ +|.+|..|+..++.++..-......     .-..|
T Consensus       908 sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p-~P~IR~NaVvglgD~~vcfN~~~de-----~t~yL  976 (1128)
T COG5098         908 SDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHP-IPRIRANAVVGLGDFLVCFNTTADE-----HTHYL  976 (1128)
T ss_pred             CCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCC-CcceeccceeeccccceehhhhhHH-----HHHHH
Confidence            6788899999999988776654433     36788999997 56 9999999999998876542222221     34557


Q ss_pred             HHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 013228          299 VNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEA  369 (447)
Q Consensus       299 ~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~  369 (447)
                      .+-|.+.+..||+.+.-.+.++...+.      +--.|.+..+..+|.++|.++...|--.+..+...+..
T Consensus       977 yrrL~De~~~V~rtclmti~fLilagq------~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt 1041 (1128)
T COG5098         977 YRRLGDEDADVRRTCLMTIHFLILAGQ------LKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNT 1041 (1128)
T ss_pred             HHHhcchhhHHHHHHHHHHHHHHHccc------eeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcccc
Confidence            777888899999999999999887542      22357788889999999998888887777777765544

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=95.22  E-value=0.51  Score=47.88  Aligned_cols=189  Identities=14%  Similarity=0.072  Sum_probs=128.0

Q ss_pred             HHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhc-CCCCchhHhHHHHHHHHhhcCChhhHHHHH
Q 013228          169 PALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELL-GHPSPSVLTRALQTVVNIAAGDDFQTQCII  247 (447)
Q Consensus       169 ~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~  247 (447)
                      +.+-.-+.+.+..-+..++..+........ ....-...+.+..++... .+.+..+...++.+|.-++......... .
T Consensus       256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~-~  333 (815)
T KOG1820|consen  256 KNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK-Y  333 (815)
T ss_pred             hHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH-H
Confidence            344445567888889899888887775543 100011123344444443 5667788888999999998765544332 2


Q ss_pred             hcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHH
Q 013228          248 NCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHE  327 (447)
Q Consensus       248 ~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~  327 (447)
                      ..++.+.+++-+... ...++..+..++-.++...+-       ..+.+.+...+..+++.++..+...+.......++.
T Consensus       334 ~~~v~p~lld~lkek-k~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~  405 (815)
T KOG1820|consen  334 AKNVFPSLLDRLKEK-KSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPK  405 (815)
T ss_pred             HHhhcchHHHHhhhc-cHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCc
Confidence            236788888888887 788888777776665543221       226777888899999999999888887776654322


Q ss_pred             HHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 013228          328 QIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVG  367 (447)
Q Consensus       328 ~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~  367 (447)
                      ....-.-.+.++.++....+.+.+++.++..++..+++.-
T Consensus       406 ~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~  445 (815)
T KOG1820|consen  406 TVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVH  445 (815)
T ss_pred             CcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHh
Confidence            2222223457888888889999999999999999988753

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.15  E-value=2.1  Score=41.96  Aligned_cols=185  Identities=15%  Similarity=0.138  Sum_probs=118.1

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHcCC-Ch----hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhH
Q 013228           42 PRFVEFLMREDYPQLQFEAAWALKNIVSG-TS----EDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARC  116 (447)
Q Consensus        42 ~~L~~ll~~~~~~~v~~~a~~~L~~l~~~-~~----~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~  116 (447)
                      |.|-+-|+-++ ..||..|+..+.++-.- ++    +..+.+++. -...+..+|+++.+.+|..|+..++.+...   +
T Consensus       177 p~l~R~L~a~N-s~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv~k~~s~---f  251 (1005)
T KOG1949|consen  177 PILWRGLKARN-SEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGVCKITSK---F  251 (1005)
T ss_pred             HHHHHhhccCc-hhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHHH---H
Confidence            34445566777 79999999999997541 22    334445543 367788999999999999988888776532   2


Q ss_pred             HHHHHh---cCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHh
Q 013228          117 RDLVLS---EEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYL  193 (447)
Q Consensus       117 ~~~~~~---~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l  193 (447)
                      -+.+..   ...+..+..-+..++..+++......|..+..++  ..-.....++|.+-..+.+..+.|+..+...|..+
T Consensus       252 We~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~i  329 (1005)
T KOG1949|consen  252 WEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKI  329 (1005)
T ss_pred             HHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc--cchhHHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence            222111   1123444444545666788888888888888764  22233466778888888999999999988888766


Q ss_pred             ccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhh
Q 013228          194 SEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIA  236 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~  236 (447)
                      -....   ..+.+---++.++..|..++..+.+.-+..+-+.+
T Consensus       330 k~vra---~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~  369 (1005)
T KOG1949|consen  330 KAVRA---AKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSF  369 (1005)
T ss_pred             Hhhhh---hhhhccccHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence            53221   12222233455666666666555555555554443

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=95.15  E-value=3.3  Score=39.91  Aligned_cols=290  Identities=12%  Similarity=0.061  Sum_probs=156.0

Q ss_pred             HHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHH
Q 013228           10 NNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVK   89 (447)
Q Consensus        10 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~   89 (447)
                      -..|..|+..|...+..-+-..+..     +-...-.++......+.|..+...|..++........ ...    ..+..
T Consensus         4 l~~R~~a~~~l~~~i~~~~~~~i~~-----iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~-~~R----~~fF~   73 (464)
T PF11864_consen    4 LSERIKAAEELCESIQKYPLSSIEE-----IWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSG-LMR----AEFFR   73 (464)
T ss_pred             HHHHHHHHHHHHHHHHhCCchHHHH-----HHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccH-HHH----HHHHH
Confidence            4567888888888776532211211     2223335565555578999999999998874433111 111    11222


Q ss_pred             hhCC-CCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccc--------------------------cchhHH
Q 013228           90 LLAS-PSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKH--------------------------AKLSML  142 (447)
Q Consensus        90 ll~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~--------------------------~~~~~~  142 (447)
                      .+.. ..++-...-+.+|..|+.+....  ...+.+..+.+..-+...                          .+....
T Consensus        74 ~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l  151 (464)
T PF11864_consen   74 DISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNL  151 (464)
T ss_pred             HHhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhH
Confidence            2232 33333345566666666554433  113455555555544210                          022334


Q ss_pred             HHHHHHHHHhcCCC-CCCChhhHhhhHHHHHHhhc-cCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC
Q 013228          143 RIATWTLSNFCAGK-PKPIFDQVRPALPALAQLVH-SNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHP  220 (447)
Q Consensus       143 ~~a~~~L~~l~~~~-~~~~~~~~~~~l~~l~~ll~-~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~  220 (447)
                      ...+..+.++.... .........+++..++.+.. ..++.....++..+..+.....--...+  ..++..|.....  
T Consensus       152 ~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl--~~~i~vLCsi~~--  227 (464)
T PF11864_consen  152 SDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESL--SPCIEVLCSIVN--  227 (464)
T ss_pred             HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHH--HHHHHHHhhHhc--
Confidence            44555666666555 33344455666666666643 3345555666666655543221111111  023344444432  


Q ss_pred             CchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccC-----CchhHHHHHHHHHHHHhcCCHHHHHHHHH-c--
Q 013228          221 SPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHN-----HKKSIKTDACWTISNITAGNSEHIQAVID-A--  292 (447)
Q Consensus       221 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~-----~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-~--  292 (447)
                      .......+-.++.||+...-..       ..+..|..+|.++     .+..+.+-|+..+..+..+..+....-+. .  
T Consensus       228 ~~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~  300 (464)
T PF11864_consen  228 SVSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPS  300 (464)
T ss_pred             ccccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHH
Confidence            2367777888999998754322       1345677777322     14455667888888877654222111121 2  


Q ss_pred             CChHHHHHHHhcCchhHHHHHHHHHHHhcC
Q 013228          293 GLIGPLVNLLQNAEFDIKNWAARAISNATF  322 (447)
Q Consensus       293 ~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~  322 (447)
                      -+++.+...++.+++.+-.+....+.++..
T Consensus       301 ~vl~sl~~al~~~~~~v~~eIl~~i~~ll~  330 (464)
T PF11864_consen  301 SVLPSLLNALKSNSPRVDYEILLLINRLLD  330 (464)
T ss_pred             HHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence            278888888888888777788888877773

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.10  E-value=0.81  Score=44.62  Aligned_cols=231  Identities=13%  Similarity=0.082  Sum_probs=134.3

Q ss_pred             hcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCC---CCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhcc--C
Q 013228          122 SEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK---PKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSE--G  196 (447)
Q Consensus       122 ~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~--~  196 (447)
                      +.++++.++..-...+...+-...-.+|+.+....   .........-.-|.+.+-|+-.+..|+.+|+..+.+.--  .
T Consensus       127 E~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~d  206 (1005)
T KOG1949|consen  127 ENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRD  206 (1005)
T ss_pred             hhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCC
Confidence            56677777776544333333333334444444332   111111223344667788889999999999999988873  2


Q ss_pred             Cc---HHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcC----ChHHHHHhhccCCchhHHH
Q 013228          197 TN---DEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCG----ALPYLLGLLIHNHKKSIKT  269 (447)
Q Consensus       197 ~~---~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~----~l~~l~~~l~~~~~~~v~~  269 (447)
                      ++   +....+++. -...+..+|+++-+.+|..|..-+..+...    ...++-..    ++..+..-+......+||-
T Consensus       207 pd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv~k~~s~----fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~  281 (1005)
T KOG1949|consen  207 PDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGVCKITSK----FWEMIPPTILIDLLKKITDELAFDTSSDVRC  281 (1005)
T ss_pred             CCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHHH----HHHHcCHHHHHHHHHHHHHHhhhccchheeh
Confidence            22   122333333 357788999999999999887766655431    11122112    3333333333333568888


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCC
Q 013228          270 DACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCAD  349 (447)
Q Consensus       270 ~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~  349 (447)
                      .....|..+....  ....+++. ++|.+-..+.+....||..+...|..+-...    ...+..--..+.++.-|...+
T Consensus       282 svf~gl~~~l~np--~sh~~le~-~Lpal~~~l~D~se~VRvA~vd~ll~ik~vr----a~~f~~I~~~d~~l~~L~~d~  354 (1005)
T KOG1949|consen  282 SVFKGLPMILDNP--LSHPLLEQ-LLPALRYSLHDNSEKVRVAFVDMLLKIKAVR----AAKFWKICPMDHILVRLETDS  354 (1005)
T ss_pred             hHhcCcHHHHcCc--cchhHHHH-HHHhcchhhhccchhHHHHHHHHHHHHHhhh----hhhhhccccHHHHHHHHhccc
Confidence            8888888776642  12233443 5667777788888999999998888774321    222333334666777777766


Q ss_pred             HHHHHHHHHHHHHHH
Q 013228          350 PEIVTVFLKGLEKIL  364 (447)
Q Consensus       350 ~~~~~~a~~~l~~l~  364 (447)
                      ..+....+..+.+.+
T Consensus       355 ~~v~rr~~~li~~s~  369 (1005)
T KOG1949|consen  355 RPVSRRLVSLIFNSF  369 (1005)
T ss_pred             cHHHHHHHHHHHHhh
Confidence            655555444444443

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=95.06  E-value=0.15  Score=36.25  Aligned_cols=73  Identities=12%  Similarity=0.024  Sum_probs=59.2

Q ss_pred             hHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChh
Q 013228          167 ALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDF  241 (447)
Q Consensus       167 ~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~  241 (447)
                      .+...+..+.++.+.+|.+++..|+.+....+  .......+++..+...|+++++-+-..|+.++..++...+.
T Consensus         4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~   76 (92)
T PF10363_consen    4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD   76 (92)
T ss_pred             HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence            34566777889999999999999999997766  11223346788899999999999999999999999976664

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=95.03  E-value=2.3  Score=40.37  Aligned_cols=161  Identities=14%  Similarity=0.208  Sum_probs=110.9

Q ss_pred             HHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCc---hhHHHHHHHHHHHHhcCCHHHH
Q 013228          210 CPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHK---KSIKTDACWTISNITAGNSEHI  286 (447)
Q Consensus       210 ~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~---~~v~~~a~~~l~nl~~~~~~~~  286 (447)
                      ...+..++.+++..-+..++..+..++. .......++...++..|..++.++..   .++......+++.+..++--..
T Consensus        85 a~~i~e~l~~~~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW  163 (713)
T KOG2999|consen   85 AKRIMEILTEGNNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW  163 (713)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence            4566777888888878788888888876 44567789999999999999987722   2444444444444433221111


Q ss_pred             HHHHHcCChHHHHHHHh--cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHH
Q 013228          287 QAVIDAGLIGPLVNLLQ--NAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKIL  364 (447)
Q Consensus       287 ~~l~~~~~~~~L~~~l~--~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~  364 (447)
                       ..+...++..+..+.+  ..+..+-..|+..|-++.... ......+.+.-.+..|+..+...+..+...|+..+..++
T Consensus       164 -~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s-~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~  241 (713)
T KOG2999|consen  164 -ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGS-DTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF  241 (713)
T ss_pred             -eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCC-hHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence             1112234444444443  236677788888888888763 445567777788999999999999999999999999998


Q ss_pred             Hhhhhhhhh
Q 013228          365 KVGEAEKNM  373 (447)
Q Consensus       365 ~~~~~~~~~  373 (447)
                      ......+.+
T Consensus       242 ~~a~~~~R~  250 (713)
T KOG2999|consen  242 RKAPDDKRF  250 (713)
T ss_pred             hhCChHHHH
Confidence            877665433

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.99  E-value=4.3  Score=40.48  Aligned_cols=341  Identities=11%  Similarity=0.076  Sum_probs=174.4

Q ss_pred             HHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh--CCChHHHH
Q 013228           11 NMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID--HGAVPIFV   88 (447)
Q Consensus        11 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~   88 (447)
                      -+++..+|.+....+-..+...+    .-+-..++++++..++.-++..+++++.-...+-.-..+.+..  ......+.
T Consensus       502 iiRRRVa~ilg~Wvsvq~~~e~k----~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lf  577 (978)
T KOG1993|consen  502 IIRRRVAWILGQWVSVQQKLELK----PLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLF  577 (978)
T ss_pred             HHHHHHHHHHhhhhheechHhHH----HHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHH
Confidence            46677777777776532111111    1244567788888854778888999998888743222222221  23444555


Q ss_pred             HhhCC-CCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHh----ccccchh-HHHHHHHHHHHhcCCCCCCChh
Q 013228           89 KLLAS-PSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQL----NKHAKLS-MLRIATWTLSNFCAGKPKPIFD  162 (447)
Q Consensus        89 ~ll~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l----~~~~~~~-~~~~a~~~L~~l~~~~~~~~~~  162 (447)
                      .++.. ..-+.+...+..|+.+.....+.   +.  .....+++.+    ..++... ++...+.++.++...-......
T Consensus       578 kll~~~~e~Dtk~~VL~~ls~lI~r~~e~---I~--P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~  652 (978)
T KOG1993|consen  578 KLLKAVEECDTKTSVLNLLSTLIERVSEH---IA--PYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFE  652 (978)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHh---hh--HHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCcc
Confidence            55554 45667777788888776432221   11  1122233332    2233333 4555677788887654333333


Q ss_pred             hHhhhHHHHHHhhccCC---hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCC
Q 013228          163 QVRPALPALAQLVHSND---KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGD  239 (447)
Q Consensus       163 ~~~~~l~~l~~ll~~~~---~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~  239 (447)
                      ...-.+|.+-....-+.   .-..+++...-.....+.+.....+.  +++|.+...+....+. ...++.++....--+
T Consensus       653 ~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll--~L~p~l~~~iE~ste~-L~t~l~Ii~sYilLd  729 (978)
T KOG1993|consen  653 FYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELL--LLFPHLLYIIEQSTEN-LPTVLMIISSYILLD  729 (978)
T ss_pred             chHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHH--HHHHHHHHHHHhhhhh-HHHHHHHHHHHHhhc
Confidence            33444444433333222   22344444333222233322222222  4677777777544332 233444444333222


Q ss_pred             hhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh--cCchhHHHHHHHHH
Q 013228          240 DFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQ--NAEFDIKNWAARAI  317 (447)
Q Consensus       240 ~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~--~~~~~v~~~a~~aL  317 (447)
                      ....-.-...|+.+.+.+++.+- ..+-....+.++..+...++ ..+.....++++.+..-+-  .+.|.+...-...+
T Consensus       730 ~~~fl~~y~~~i~k~~~~~l~dv-r~egl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vv  807 (978)
T KOG1993|consen  730 NTVFLNDYAFGIFKKLNDLLDDV-RNEGLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVV  807 (978)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHH
Confidence            21111122346777777777655 44444555566666655543 5666667788888777654  34577777777788


Q ss_pred             HHhcCCCCHHHH-HHHHHcCChHHHHhh--------ccC-CCHHHHHHHHHHHHHHHHh
Q 013228          318 SNATFGGTHEQI-KYLVREGCIKPLCDL--------LLC-ADPEIVTVFLKGLEKILKV  366 (447)
Q Consensus       318 ~~l~~~~~~~~~-~~l~~~~~l~~L~~l--------l~~-~~~~~~~~a~~~l~~l~~~  366 (447)
                      +.++.. +++.. ..+.+....+.++..        .++ .+++-++.-+-++..+++.
T Consensus       808 aRi~l~-n~~~~msvlqt~~~~d~~~~~li~~WI~~~~~I~~~k~rKl~~LalsSll~t  865 (978)
T KOG1993|consen  808 ARISLR-NPSLFMSVLQTKNTYDILIAMLIGNWILLFDHINHPKDRKLNTLALSSLLRT  865 (978)
T ss_pred             HHHHhc-ChHHHHHHHHhhhhHHHHHHHHHHHHHHHcccCCCHHHhhHHHHHHHHHhcc
Confidence            888776 44443 333333333333321        111 3455555555555666553

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=94.94  E-value=0.14  Score=34.38  Aligned_cols=67  Identities=16%  Similarity=0.091  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCC
Q 013228           13 QLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHG   82 (447)
Q Consensus        13 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~   82 (447)
                      ...|+|++.++.+.  +.-...+.+.++++.++++..+.+...+|-.|..+|+-++. +.+..+.+.+.|
T Consensus         4 lKaaLWaighIgss--~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSS--PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcC--hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence            46799999999886  45566666789999999998766548999999999999998 677776666554

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=94.89  E-value=2.5  Score=37.20  Aligned_cols=202  Identities=14%  Similarity=0.086  Sum_probs=135.3

Q ss_pred             HHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChh----hHHHHH-hcCChHHHHHhhccCCc-hhHHHHHHHHH
Q 013228          202 QAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDF----QTQCII-NCGALPYLLGLLIHNHK-KSIKTDACWTI  275 (447)
Q Consensus       202 ~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~----~~~~~~-~~~~l~~l~~~l~~~~~-~~v~~~a~~~l  275 (447)
                      +.+.+.|.+..++..+..-+..-+..++.+..++-...-.    ....+. +...+..++.-   -.+ +++.-.+..++
T Consensus        73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~---~~~~~~iaL~cg~ml  149 (342)
T KOG1566|consen   73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG---YENTPEIALTCGNML  149 (342)
T ss_pred             HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh---hccchHHHHHHHHHH
Confidence            4577889999999999998999999999999988653221    111111 12233333333   212 44444444455


Q ss_pred             HHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCC----hHHHHhhccCCCHH
Q 013228          276 SNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGC----IKPLCDLLLCADPE  351 (447)
Q Consensus       276 ~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~----l~~L~~ll~~~~~~  351 (447)
                      ..+.++ +...+.+....-+.....+++.+..++...|......+.... +.....+.....    .+.-..++.+++.-
T Consensus       150 rEcirh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~H-k~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyv  227 (342)
T KOG1566|consen  150 RECIRH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRH-KSVVAEFLIRNYDNFFAEVYEKLLRSENYV  227 (342)
T ss_pred             HHHHhh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHh-HHHHHHHHHhChhhhHHHHHHHHhccccee
Confidence            554443 455566677778888899999898899888988888887754 233333333333    44466788889988


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013228          352 IVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETY  418 (447)
Q Consensus       352 ~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~  418 (447)
                      ++..+++.+..++-...+...          -...+.+..-++.+..++..++..++-.|=.+...+
T Consensus       228 tkrqs~kllg~llldr~N~~~----------M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvf  284 (342)
T KOG1566|consen  228 TKRQSLKLLGELLLDRSNSAV----------MTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVF  284 (342)
T ss_pred             hHHHHHHhHHHHHhCCCcHHH----------HHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHH
Confidence            899999999999876655443          245555566788888998888888876666655443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=94.87  E-value=0.79  Score=46.21  Aligned_cols=193  Identities=17%  Similarity=0.115  Sum_probs=119.4

Q ss_pred             HHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHH--HHHHhhccCCh-h
Q 013228          105 ALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALP--ALAQLVHSNDK-E  181 (447)
Q Consensus       105 ~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~--~l~~ll~~~~~-~  181 (447)
                      +++++....+..-..+.+.++...+...+......++...+...+.+++...+..........+.  ..-.++...+. +
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            77788888877777888999999999999767778899999999999997764333333322222  33334444444 6


Q ss_pred             HHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcC-ChhhHHHHHhcCChHH-HHHhh
Q 013228          182 VMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG-DDFQTQCIINCGALPY-LLGLL  259 (447)
Q Consensus       182 v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~~~~l~~-l~~~l  259 (447)
                      .-..++..+..+...++....                   ...+..+...+...... .......... ..+.. +..++
T Consensus       574 rsY~~~siLa~ll~~~~~~~~-------------------~~~r~~~~~~l~e~i~~~~~~~~~~~~~-~~f~~~~~~il  633 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEKTTE-------------------CVFRNSVNELLVEAISRWLTSEIRVIND-RSFFPRILRIL  633 (699)
T ss_pred             HHHHHHHHHHHHHhCCCcCcc-------------------ccchHHHHHHHHHHhhccCccceeehhh-hhcchhHHHHh
Confidence            677777777776654432111                   11122222222222111 1111111222 22333 66667


Q ss_pred             ccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-chhHHHHHHHHH
Q 013228          260 IHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNA-EFDIKNWAARAI  317 (447)
Q Consensus       260 ~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~-~~~v~~~a~~aL  317 (447)
                      ..+..+.....|.|++.+++...++..+.+.+.++++.+.+.-... ..+++..+...+
T Consensus       634 ~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  692 (699)
T KOG3665|consen  634 RLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI  692 (699)
T ss_pred             cccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence            6655788999999999999998888888888899988877764422 445555554444

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=94.86  E-value=0.082  Score=43.82  Aligned_cols=96  Identities=18%  Similarity=0.223  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcC--------CCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHH
Q 013228           15 EATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMR--------EDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPI   86 (447)
Q Consensus        15 ~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~--------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~   86 (447)
                      ..+..|...+...+..-.+.+++.|++..|+++|..        ..+.++...++.||..+..........+-..+++..
T Consensus        83 ~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~  162 (187)
T PF06371_consen   83 KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNL  162 (187)
T ss_dssp             HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHH
T ss_pred             HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHH
Confidence            344444444544322336778888999999988753        122578999999999999844443444444689999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhh
Q 013228           87 FVKLLASPSDDIREQAVCALGNVA  110 (447)
Q Consensus        87 L~~ll~~~~~~i~~~a~~~L~~l~  110 (447)
                      |+..+.+++..++..++..|..+|
T Consensus       163 i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  163 IALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             HHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999887

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=94.78  E-value=2  Score=40.76  Aligned_cols=166  Identities=11%  Similarity=0.065  Sum_probs=111.7

Q ss_pred             hhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCc----hhHhHHHHHHHHhhcCChh
Q 013228          166 PALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSP----SVLTRALQTVVNIAAGDDF  241 (447)
Q Consensus       166 ~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~----~v~~~a~~~l~~l~~~~~~  241 (447)
                      .....+...+.+++..-+..++.-+..++... .....++...++..|.+++.+...    .+...+++++..+....- 
T Consensus        83 ~~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~-~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-  160 (713)
T KOG2999|consen   83 HYAKRIMEILTEGNNISKMEALKELDSLSLDP-TFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-  160 (713)
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHhhccccH-HHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-
Confidence            34556788888888877777888888888544 456778889999999999977543    555666666666554322 


Q ss_pred             hHHHHHhcCChHHHHHhhccC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHh
Q 013228          242 QTQCIINCGALPYLLGLLIHN-HKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNA  320 (447)
Q Consensus       242 ~~~~~~~~~~l~~l~~~l~~~-~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l  320 (447)
                      .........++.....+..-. .+..+-..|...+-++..++....+.+.+.--+..|+..++..+..++..|...+..+
T Consensus       161 vsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal  240 (713)
T KOG2999|consen  161 VSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNAL  240 (713)
T ss_pred             eeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            111111122233333333211 1456667788888888877766677777888899999999999999998888888777


Q ss_pred             cCCCCHHHHHHHH
Q 013228          321 TFGGTHEQIKYLV  333 (447)
Q Consensus       321 ~~~~~~~~~~~l~  333 (447)
                      .....++.+..+.
T Consensus       241 ~~~a~~~~R~~~~  253 (713)
T KOG2999|consen  241 FRKAPDDKRFEMA  253 (713)
T ss_pred             HhhCChHHHHHHH
Confidence            7766555444443

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=94.70  E-value=5.7  Score=40.63  Aligned_cols=129  Identities=12%  Similarity=0.116  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhh
Q 013228           96 DDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLV  175 (447)
Q Consensus        96 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll  175 (447)
                      +.++..+.-+|+++|-......+     ..+|.+++-|..+.+..++-+..-++..+|...    ..+....+|.+...|
T Consensus       945 ~~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----Tam~d~YiP~I~~~L 1015 (1529)
T KOG0413|consen  945 DKVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----TAMTDRYIPMIAASL 1015 (1529)
T ss_pred             hHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----HHHHHHhhHHHHHHh
Confidence            56788899999999955443322     347889999977777777777777777777432    334567889999999


Q ss_pred             ccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhc
Q 013228          176 HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAA  237 (447)
Q Consensus       176 ~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~  237 (447)
                      .++++-++.+++-.|.++.+..--+.    +..++-.++.-+-+.+++++.-|=.+++.+..
T Consensus      1016 ~Dp~~iVRrqt~ilL~rLLq~~~vKw----~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~ 1073 (1529)
T KOG0413|consen 1016 CDPSVIVRRQTIILLARLLQFGIVKW----NGELFIRFMLALLDANEDIRNDAKFYISEVLQ 1073 (1529)
T ss_pred             cCchHHHHHHHHHHHHHHHhhhhhhc----chhhHHHHHHHHcccCHHHHHHHHHHHHHHHh
Confidence            99999999999999999985432221    22233444444556778888888888887754

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=94.68  E-value=0.5  Score=38.96  Aligned_cols=127  Identities=13%  Similarity=0.081  Sum_probs=83.0

Q ss_pred             cccCCCHHHHHHHHHHHHHHHccCCCCchhhh----------------hccCCHHHHHHhhcC-----CCCHHHHHHHHH
Q 013228            4 GVWSDDNNMQLEATTHIRKLLSNARSAPTEEV----------------IPFGVVPRFVEFLMR-----EDYPQLQFEAAW   62 (447)
Q Consensus         4 ~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~----------------~~~~~v~~L~~ll~~-----~~~~~v~~~a~~   62 (447)
                      .+.+++....-.++..|.|++..+  .....+                .+...+..|+.++..     .+..+-....+.
T Consensus         3 ~i~~~~~~~adl~~MLLsNlT~~~--~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~   80 (192)
T PF04063_consen    3 YITDPKSPLADLACMLLSNLTRSD--SGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLAS   80 (192)
T ss_pred             eecCCCcchHHHHHHHHHHhccch--HHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHH
Confidence            344555555566777777777642  222211                123367777777755     121345677889


Q ss_pred             HHHHHcCCChhhHHHHHhCC--C--hHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHh--cCCHHHHHHHh
Q 013228           63 ALKNIVSGTSEDTKVVIDHG--A--VPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLS--EEALIPLLTQL  133 (447)
Q Consensus        63 ~L~~l~~~~~~~~~~~~~~~--~--i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~l~~~l  133 (447)
                      +|.|++. .++.|..+.+..  .  +..|+.++++.+..-|..++.+|.|+|.+.......+..  .++++.++--|
T Consensus        81 vl~NlS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPL  156 (192)
T PF04063_consen   81 VLANLSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPL  156 (192)
T ss_pred             HHHHhcC-CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhc
Confidence            9999999 889999998763  4  778888888887888889999999999887654333322  24455444444

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.60  E-value=0.66  Score=40.55  Aligned_cols=146  Identities=20%  Similarity=0.209  Sum_probs=101.6

Q ss_pred             hhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHH
Q 013228          165 RPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQ  244 (447)
Q Consensus       165 ~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~  244 (447)
                      ...+...+..|.+.+......++..+..++....+.....+. .++-.+++-+++....|-+.|+.+++.+.........
T Consensus        87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~  165 (334)
T KOG2933|consen   87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID  165 (334)
T ss_pred             HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445666777888899999999999999999665544333332 3566777778888899999999999999865544333


Q ss_pred             HHHhcCChHHHHHhhcc---CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhc
Q 013228          245 CIINCGALPYLLGLLIH---NHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNAT  321 (447)
Q Consensus       245 ~~~~~~~l~~l~~~l~~---~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~  321 (447)
                      .     -++.++..|.+   ..+..++..|-.+|..+..+-..       ..+++.|+..+....+.++..++.++.+..
T Consensus       166 ~-----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp-------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v  233 (334)
T KOG2933|consen  166 Q-----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP-------QKLLRKLIPILQHSNPRVRAKAALCFSRCV  233 (334)
T ss_pred             H-----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHhhhchhhhhhhhccccccc
Confidence            2     23334433321   11567888898888888764222       125777888888888999988887776665


Q ss_pred             CC
Q 013228          322 FG  323 (447)
Q Consensus       322 ~~  323 (447)
                      ..
T Consensus       234 ~r  235 (334)
T KOG2933|consen  234 IR  235 (334)
T ss_pred             ee
Confidence            43

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=94.49  E-value=0.78  Score=37.87  Aligned_cols=114  Identities=18%  Similarity=0.192  Sum_probs=75.7

Q ss_pred             cCCCCchhHhHHHHHHHHhhcCChhhHHHHHh----------------cCChHHHHHhhccC-----CchhHHHHHHHHH
Q 013228          217 LGHPSPSVLTRALQTVVNIAAGDDFQTQCIIN----------------CGALPYLLGLLIHN-----HKKSIKTDACWTI  275 (447)
Q Consensus       217 L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~----------------~~~l~~l~~~l~~~-----~~~~v~~~a~~~l  275 (447)
                      +.+++......++..|+|++..... ...+++                ...+..|+..+..+     ....--...+.++
T Consensus         4 i~~~~~~~adl~~MLLsNlT~~~~~-~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl   82 (192)
T PF04063_consen    4 ITDPKSPLADLACMLLSNLTRSDSG-CEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVL   82 (192)
T ss_pred             ecCCCcchHHHHHHHHHHhccchHH-HHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHH
Confidence            3445556667788888888875542 232332                22456677766551     1334456788899


Q ss_pred             HHHhcCCHHHHHHHHHc--CC--hHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 013228          276 SNITAGNSEHIQAVIDA--GL--IGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVR  334 (447)
Q Consensus       276 ~nl~~~~~~~~~~l~~~--~~--~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~  334 (447)
                      .|++.. ++.++.+++.  +.  +..|+.++++.+..-|.-++.+|.|++..  .+.-..+..
T Consensus        83 ~NlS~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd--~~~H~~LL~  142 (192)
T PF04063_consen   83 ANLSQL-PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFD--TDSHEWLLS  142 (192)
T ss_pred             HHhcCC-HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhcc--HhHHHHhcC
Confidence            999664 6778888753  34  78888888888777788899999999985  344455444

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=94.27  E-value=0.54  Score=38.92  Aligned_cols=105  Identities=13%  Similarity=0.189  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhc----CCCCHHHHHHHHHHHHHHcCC-ChhhHHHHHhCCCh
Q 013228           10 NNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLM----REDYPQLQFEAAWALKNIVSG-TSEDTKVVIDHGAV   84 (447)
Q Consensus        10 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~----~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i   84 (447)
                      ..-...|+..|..++++  ++....+.++.+--.+-..|.    +...+-+|..++.+++.+... +++....+....++
T Consensus       114 snRvcnaL~lLQclaSh--Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeiv  191 (315)
T COG5209         114 SNRVCNALNLLQCLASH--PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIV  191 (315)
T ss_pred             hhHHHHHHHHHHHHhcC--cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHH
Confidence            44456677777777877  677777777654333334432    222356888999999999874 45556677778999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhcCChhH
Q 013228           85 PIFVKLLASPSDDIREQAVCALGNVAADSARC  116 (447)
Q Consensus        85 ~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~  116 (447)
                      |..++.++..++--+..++.++..+..++...
T Consensus       192 PLcLrIme~gSElSktvaifI~qkil~dDvGL  223 (315)
T COG5209         192 PLCLRIMELGSELSKTVAIFIFQKILGDDVGL  223 (315)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHhccchhH
Confidence            99999999998888989999998888776543

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.26  E-value=6.1  Score=38.98  Aligned_cols=105  Identities=16%  Similarity=0.114  Sum_probs=77.9

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHH
Q 013228           39 GVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRD  118 (447)
Q Consensus        39 ~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~  118 (447)
                      |.+..+++-..+++ ..||..++..|..+.....+..+. +-.++...+..-+.+..+.+|.+|+.+|+.+-.++..-  
T Consensus        85 ~~f~hlLRg~Eskd-k~VRfrvlqila~l~d~~~eidd~-vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de--  160 (892)
T KOG2025|consen   85 GTFYHLLRGTESKD-KKVRFRVLQILALLSDENAEIDDD-VFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE--  160 (892)
T ss_pred             HHHHHHHhcccCcc-hhHHHHHHHHHHHHhccccccCHH-HHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC--
Confidence            45566666667777 799999999999998844443333 33466777777777888999999999999997543221  


Q ss_pred             HHHhcCCHHHHHHHhccccchhHHHHHHHHHH
Q 013228          119 LVLSEEALIPLLTQLNKHAKLSMLRIATWTLS  150 (447)
Q Consensus       119 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~  150 (447)
                         +..++..+..++.++++.++++.++..+.
T Consensus       161 ---e~~v~n~l~~liqnDpS~EVRRaaLsnI~  189 (892)
T KOG2025|consen  161 ---ECPVVNLLKDLIQNDPSDEVRRAALSNIS  189 (892)
T ss_pred             ---cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence               33467788888888999999998875554

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.20  E-value=10  Score=42.04  Aligned_cols=229  Identities=14%  Similarity=0.089  Sum_probs=120.0

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCC-CCCChhh
Q 013228           85 PIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK-PKPIFDQ  163 (447)
Q Consensus        85 ~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~  163 (447)
                      ..++..+..+++..+..+..+++.++..-+.. ..  -....+..+..+....|+-.|.--..++..+-++. .......
T Consensus       879 ~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~-~f--~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qh  955 (2067)
T KOG1822|consen  879 TLIVNSLINPNPKLRCAAAEALARLAQVVGSA-PF--VASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQH  955 (2067)
T ss_pred             HHHhhhhccCChHHHHHHHHHHHHHHHhcccc-ch--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchh
Confidence            44445555677888888888888887432210 01  11234556666655556655555666666666655 2333344


Q ss_pred             HhhhHHHHHHhhccC-ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-CC--chhHhHHHHHHH------
Q 013228          164 VRPALPALAQLVHSN-DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH-PS--PSVLTRALQTVV------  233 (447)
Q Consensus       164 ~~~~l~~l~~ll~~~-~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~--~~v~~~a~~~l~------  233 (447)
                      ....+..+..+-+++ ++.|+..++.++.-+...........+ ...+..+..+|-+ +.  .++...--+++.      
T Consensus       956 l~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~v-e~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~ 1034 (2067)
T KOG1822|consen  956 LNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLV-EPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDED 1034 (2067)
T ss_pred             cccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhH-HHHHHHHHHHcCCCCcchhhhhhhhccccccchhHH
Confidence            456677777777766 469999999999988865544333222 2334444445433 22  122222222221      


Q ss_pred             Hh-------hcCChh--hHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc
Q 013228          234 NI-------AAGDDF--QTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQN  304 (447)
Q Consensus       234 ~l-------~~~~~~--~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~  304 (447)
                      ++       ...+..  .... +....+-...-++.++ +..++.++..++-++-...+....   -.-+++.+..++.+
T Consensus      1035 alittlgpeL~~N~~~d~t~~-~rts~la~~allls~~-d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~l~s 1109 (2067)
T KOG1822|consen 1035 ALITTLGPELGPNGDKDSTST-LRTSCLAACALLLSHS-DPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSLLSS 1109 (2067)
T ss_pred             HHHHhcccccCCCCcccchhH-HHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHHhcc
Confidence            11       111111  1111 1111122222334455 888888998888877653332111   11256667776666


Q ss_pred             CchhHHHHHHHHHHHhcC
Q 013228          305 AEFDIKNWAARAISNATF  322 (447)
Q Consensus       305 ~~~~v~~~a~~aL~~l~~  322 (447)
                      ...-.|.....++..+..
T Consensus      1110 ~~~i~r~~~~~clrql~~ 1127 (2067)
T KOG1822|consen 1110 SYLILRRASFSCLRQLVQ 1127 (2067)
T ss_pred             hhhhhhhhHHhhhhHHhH
Confidence            555555555555555544

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=94.18  E-value=1.8  Score=42.45  Aligned_cols=140  Identities=14%  Similarity=0.115  Sum_probs=96.3

Q ss_pred             hhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhc-CCCCchhHhHHHHHHHHhhcCCh
Q 013228          162 DQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELL-GHPSPSVLTRALQTVVNIAAGDD  240 (447)
Q Consensus       162 ~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~a~~~l~~l~~~~~  240 (447)
                      .....++|.|...+++.+..++..++..+..+++.-+.   .+++.-++|.+..+- .+.+..++..++-|++.++..-+
T Consensus       385 ~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~---~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD  461 (700)
T KOG2137|consen  385 EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV---PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD  461 (700)
T ss_pred             HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH---HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH
Confidence            34578899999999999999999999999998866552   355666788887774 55778899999999998883221


Q ss_pred             hhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHH
Q 013228          241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIK  310 (447)
Q Consensus       241 ~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~  310 (447)
                          ...-...+..+.+..+.. ++.+......+..++....... ..++-..++|.++.+...+.-...
T Consensus       462 ----~~~v~d~~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~L~~~  525 (700)
T KOG2137|consen  462 ----KAAVLDELLPILKCIKTR-DPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPSLNGE  525 (700)
T ss_pred             ----HHHhHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcccccHH
Confidence                111112344455555566 7888877777777776533222 344556688888888776554433

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.06  E-value=0.32  Score=42.38  Aligned_cols=145  Identities=15%  Similarity=0.166  Sum_probs=100.8

Q ss_pred             HHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHH
Q 013228          126 LIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVI  205 (447)
Q Consensus       126 l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~  205 (447)
                      +...+..| .+.++.....++..+..|+...++........++..+++-+++....|-..|+.++..+...-.+.+....
T Consensus        90 l~~~l~~L-~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~l  168 (334)
T KOG2933|consen   90 LKQALKKL-SSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQEL  168 (334)
T ss_pred             HHHHHHHh-chHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555666 67788888888888888887765555555677888888899999999999999999998865444333211


Q ss_pred             HhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc
Q 013228          206 EAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA  280 (447)
Q Consensus       206 ~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~  280 (447)
                      + +.+..|..--..++..++..|-.+|..++......       .+++.|+..+.+. .+.++..++.+..++..
T Consensus       169 d-~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~-n~r~r~~a~~~~~~~v~  234 (334)
T KOG2933|consen  169 D-DLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHS-NPRVRAKAALCFSRCVI  234 (334)
T ss_pred             H-HHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhh-chhhhhhhhccccccce
Confidence            1 12222222223355678888999998887644322       2566788888888 88999888887777654

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=94.03  E-value=7  Score=38.82  Aligned_cols=281  Identities=14%  Similarity=0.078  Sum_probs=161.6

Q ss_pred             CCChHHHHHhhCC--------CCHHHHHHHHHHHHHhhc--CChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHH
Q 013228           81 HGAVPIFVKLLAS--------PSDDIREQAVCALGNVAA--DSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLS  150 (447)
Q Consensus        81 ~~~i~~L~~ll~~--------~~~~i~~~a~~~L~~l~~--~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~  150 (447)
                      .|+++.+...+..        +++.-.+.|++.++++..  ..+....-+++.-+++.++..+ ++.---++..+|..+.
T Consensus       407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f-~s~ygfL~Srace~is  485 (970)
T COG5656         407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAF-RSNYGFLKSRACEFIS  485 (970)
T ss_pred             hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhh-cCcccchHHHHHHHHH
Confidence            3788888888832        234556688888888764  2111222333433455555555 5555567788999999


Q ss_pred             HhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHh---CcHHHHHHhcCCCCchhHhH
Q 013228          151 NFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEA---GVCPRLVELLGHPSPSVLTR  227 (447)
Q Consensus       151 ~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~---~~~~~L~~lL~~~~~~v~~~  227 (447)
                      .+..+  -........+......++++++-.++..|..++..+..+...  ......   +.++.|+.+-+.-+.++...
T Consensus       486 ~~eeD--fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~--h~k~sahVp~tmekLLsLSn~feiD~LS~  561 (970)
T COG5656         486 TIEED--FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQS--HEKFSAHVPETMEKLLSLSNTFEIDPLSM  561 (970)
T ss_pred             HHHHh--cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhh--hHHHHhhhhHHHHHHHHhcccccchHHHH
Confidence            88443  344445567778888888888888998888888877755422  222222   44555665555544444444


Q ss_pred             HHHHH-HHhhcCChhhHHHHHh---cCChHHHHHhhccCC-----chhHHHHHHHHHHHHhc------CCHHHHHHHHHc
Q 013228          228 ALQTV-VNIAAGDDFQTQCIIN---CGALPYLLGLLIHNH-----KKSIKTDACWTISNITA------GNSEHIQAVIDA  292 (447)
Q Consensus       228 a~~~l-~~l~~~~~~~~~~~~~---~~~l~~l~~~l~~~~-----~~~v~~~a~~~l~nl~~------~~~~~~~~l~~~  292 (447)
                      ++..+ ...+..-......+..   ..++.....++..+.     ..+-+..|.+.|..+.+      ..+...+.+.. 
T Consensus       562 vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~-  640 (970)
T COG5656         562 VMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEV-  640 (970)
T ss_pred             HHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH-
Confidence            44332 2222211111111111   133344444444331     11233445555554432      34444444433 


Q ss_pred             CChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCH-HHHHHHHHHHHHHHHhhhhh
Q 013228          293 GLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADP-EIVTVFLKGLEKILKVGEAE  370 (447)
Q Consensus       293 ~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~-~~~~~a~~~l~~l~~~~~~~  370 (447)
                      ...|.+--++...-.++-.+|+..+-+.+.. ..+....  -=|+.+.+.+++.+... .-...+..++.|++..+.+.
T Consensus       641 slypvi~Filkn~i~dfy~Ea~dildg~tf~-skeI~pi--mwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~e  716 (970)
T COG5656         641 SLYPVISFILKNEISDFYQEALDILDGYTFM-SKEIEPI--MWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTE  716 (970)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhhhHH-HHHhhhh--hhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccc
Confidence            3667666667777778888888888776653 1222211  12577888888888764 66677888999999888553

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=94.00  E-value=8.4  Score=43.28  Aligned_cols=270  Identities=9%  Similarity=0.048  Sum_probs=144.3

Q ss_pred             CCCHHHHHHHHHHHHHhhcCChhH---HHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHH
Q 013228           93 SPSDDIREQAVCALGNVAADSARC---RDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALP  169 (447)
Q Consensus        93 ~~~~~i~~~a~~~L~~l~~~~~~~---~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~  169 (447)
                      +++..++..|+..|..++..--+.   ...-.+...+.++...+.+..+.++++..+.++.++..........-...++.
T Consensus      1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~ 1227 (1780)
T PLN03076       1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFM 1227 (1780)
T ss_pred             CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHH
Confidence            346678888888888877321111   11112334677888888777788999999999998875542111111233444


Q ss_pred             HHHHhhccCChhHHHHHHHHHHHhccCCcHH-----HHHHHHhCcHHHHHHhcCCC-CchhHhHHHHHHHHhhcCC----
Q 013228          170 ALAQLVHSNDKEVMTDACRALFYLSEGTNDE-----IQAVIEAGVCPRLVELLGHP-SPSVLTRALQTVVNIAAGD----  239 (447)
Q Consensus       170 ~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~-----~~~~~~~~~~~~L~~lL~~~-~~~v~~~a~~~l~~l~~~~----  239 (447)
                      .+.....+.++.+...+..++..+....-..     ...+.  ..+..+..+.... +..+-..|+..|++++..-    
T Consensus      1228 VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~--DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~ 1305 (1780)
T PLN03076       1228 VFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT--DCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGD 1305 (1780)
T ss_pred             HHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH--HHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcc
Confidence            4444445666777777777776665321100     00111  2344455554332 3556666666666552100    


Q ss_pred             h-----------------------hhH-----HHHHhcCChHHHHH---hhccCCchhHHHHHHHHHHHHhc-----CCH
Q 013228          240 D-----------------------FQT-----QCIINCGALPYLLG---LLIHNHKKSIKTDACWTISNITA-----GNS  283 (447)
Q Consensus       240 ~-----------------------~~~-----~~~~~~~~l~~l~~---~l~~~~~~~v~~~a~~~l~nl~~-----~~~  283 (447)
                      -                       ...     ........++.|..   +..+. +.+||..|..+|-.+..     -++
T Consensus      1306 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~-RlEVR~~ALqtLF~iL~~yG~~Fs~ 1384 (1780)
T PLN03076       1306 LGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDP-RPEIRKSALQVLFDTLRNHGHLFSL 1384 (1780)
T ss_pred             ccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhhccCCH
Confidence            0                       000     00001123344433   34555 89999999998877664     134


Q ss_pred             HHHHHHHHcCChHHHHHHHhcC-------------------ch----hHHHHHHHHHHHhcCCCCHHHHHHHH--HcCCh
Q 013228          284 EHIQAVIDAGLIGPLVNLLQNA-------------------EF----DIKNWAARAISNATFGGTHEQIKYLV--REGCI  338 (447)
Q Consensus       284 ~~~~~l~~~~~~~~L~~~l~~~-------------------~~----~v~~~a~~aL~~l~~~~~~~~~~~l~--~~~~l  338 (447)
                      +.+..++.. ++-.++..+...                   +.    .+...+..+|..+..-- ..+...+-  =.+++
T Consensus      1385 ~~W~~if~~-VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLf-t~fFd~L~~~L~~~l 1462 (1780)
T PLN03076       1385 PLWERVFES-VLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLF-VKFYPTVNPLLKKVL 1462 (1780)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            555555553 455555554311                   00    12233444444443210 11112111  12566


Q ss_pred             HHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 013228          339 KPLCDLLLCADPEIVTVFLKGLEKILKVG  367 (447)
Q Consensus       339 ~~L~~ll~~~~~~~~~~a~~~l~~l~~~~  367 (447)
                      ..|..++..++..+...+..+|.+++...
T Consensus      1463 ~ll~~ci~q~n~~la~ig~~~l~~li~~n 1491 (1780)
T PLN03076       1463 MLLVSFIKRPHQSLAGIGIAAFVRLMSNA 1491 (1780)
T ss_pred             HHHHHHHcCchHHHHHHHHHHHHHHHHHh
Confidence            67777778888889999999999998654

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=93.89  E-value=0.76  Score=38.11  Aligned_cols=137  Identities=14%  Similarity=0.076  Sum_probs=92.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-----cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhc
Q 013228          271 ACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQ-----NAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLL  345 (447)
Q Consensus       271 a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~-----~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll  345 (447)
                      |...+..+++ .|+....+++..+--.+...+.     +..+.+|..+..+++.+..++++...+.+....+++.+.+++
T Consensus       120 aL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIm  198 (315)
T COG5209         120 ALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIM  198 (315)
T ss_pred             HHHHHHHHhc-CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHH
Confidence            3344445544 4677777777765444455554     234678999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHH-----HHHHhcCCCHHHHHHHHHHHHHh
Q 013228          346 LCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEK-----IENLRSHDNDEIHEKSVKILETY  418 (447)
Q Consensus       346 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----l~~l~~~~~~~v~~~a~~~l~~~  418 (447)
                      +.+.+--+..++.++..++.++...+-          .+..+++-.++..     ..++...++..+-+.+.++.-++
T Consensus       199 e~gSElSktvaifI~qkil~dDvGLqY----------iCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRL  266 (315)
T COG5209         199 ELGSELSKTVAIFIFQKILGDDVGLQY----------ICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRL  266 (315)
T ss_pred             HhhhHHHHHHHHHHHHHHhccchhHHH----------HHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheee
Confidence            998887777888889988877655432          3555554433333     22344556666555555443333

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=93.88  E-value=5.7  Score=37.23  Aligned_cols=189  Identities=14%  Similarity=0.141  Sum_probs=116.8

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHcCCC---hhhHHHHHhCCChHHHHHhhCC-------CCHHHHHHHHHHHHHhhc
Q 013228           42 PRFVEFLMREDYPQLQFEAAWALKNIVSGT---SEDTKVVIDHGAVPIFVKLLAS-------PSDDIREQAVCALGNVAA  111 (447)
Q Consensus        42 ~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~~~~~~i~~L~~ll~~-------~~~~i~~~a~~~L~~l~~  111 (447)
                      ..+..++...+ ++-|..|+....+++...   ...++.+.++-+.+.+-+++.+       ++...+.-++..|..+|+
T Consensus        14 ~~~~~L~~~k~-D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~   92 (698)
T KOG2611|consen   14 DDCLKLLKGKR-DEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR   92 (698)
T ss_pred             hhHHHHhcccC-hHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC
Confidence            34566666666 688899999999998743   2356668888788888888865       345567777888888887


Q ss_pred             CChh--HHHHHHhcCCHHHHHHHhccccchh------HHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhH-
Q 013228          112 DSAR--CRDLVLSEEALIPLLTQLNKHAKLS------MLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEV-  182 (447)
Q Consensus       112 ~~~~--~~~~~~~~~~l~~l~~~l~~~~~~~------~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v-  182 (447)
                      .++-  ..+.+   +.+|.++..+....|++      +...+..+|..++...+........|.++.+.++-.-++... 
T Consensus        93 ~pElAsh~~~v---~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d  169 (698)
T KOG2611|consen   93 VPELASHEEMV---SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHD  169 (698)
T ss_pred             ChhhccCHHHH---HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchh
Confidence            6532  12232   34888888886555544      888899999999988766666666899999987754333211 


Q ss_pred             HHHHHHHHH----HhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhc
Q 013228          183 MTDACRALF----YLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAA  237 (447)
Q Consensus       183 ~~~al~~l~----~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~  237 (447)
                      ..-++..+.    .+-..+.. ...+..  ++..+..=+...+...+...|+.|..+..
T Consensus       170 ~alal~Vlll~~~~~~cw~e~-~~~fla--li~~va~df~~~~~a~KfElc~lL~~vl~  225 (698)
T KOG2611|consen  170 MALALKVLLLLVSKLDCWSET-IERFLA--LIAAVARDFAVLHNALKFELCHLLSAVLS  225 (698)
T ss_pred             HHHHHHHHHHHHHhcccCcCC-HHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence            111222111    11111211 111221  13333333344556677778888885543

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=93.86  E-value=1.1  Score=42.71  Aligned_cols=128  Identities=17%  Similarity=0.171  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC
Q 013228          141 MLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHP  220 (447)
Q Consensus       141 ~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~  220 (447)
                      +.......+.+.-.+.|.. ...+.+.+..+++.+.+++..|+..++..|.-++..-.+ +...+-.+++..|.+.+-+.
T Consensus        67 il~fl~~f~~Y~~~~dpeg-~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DR  144 (885)
T COG5218          67 ILSFLKRFFEYDMPDDPEG-EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDR  144 (885)
T ss_pred             HHHHHHHHHHhcCCCChhh-hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcc
Confidence            3333333333333333332 445677888888888899999999999999988855433 23455567888888888889


Q ss_pred             CchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHH
Q 013228          221 SPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTI  275 (447)
Q Consensus       221 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l  275 (447)
                      .+.+|..|+.+|+.+-........     .....+..+++...+.+||+.|...+
T Consensus       145 E~~VR~eAv~~L~~~Qe~~~neen-----~~~n~l~~~vqnDPS~EVRr~allni  194 (885)
T COG5218         145 EKAVRREAVKVLCYYQEMELNEEN-----RIVNLLKDIVQNDPSDEVRRLALLNI  194 (885)
T ss_pred             hHHHHHHHHHHHHHHHhccCChHH-----HHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence            999999999999887533221111     12335666676554788888775433

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=93.78  E-value=5.3  Score=36.52  Aligned_cols=158  Identities=16%  Similarity=0.142  Sum_probs=111.9

Q ss_pred             HHHHHHhcCCCCchhHhHHHHHHHHhhc-CChhhHHHHHhc-C-ChHHHHHhhccCC----c--------hhHHHHHHHH
Q 013228          210 CPRLVELLGHPSPSVLTRALQTVVNIAA-GDDFQTQCIINC-G-ALPYLLGLLIHNH----K--------KSIKTDACWT  274 (447)
Q Consensus       210 ~~~L~~lL~~~~~~v~~~a~~~l~~l~~-~~~~~~~~~~~~-~-~l~~l~~~l~~~~----~--------~~v~~~a~~~  274 (447)
                      +..+.+.|......+...+++.|..++. ........+... + -.+.+.+++....    .        +.+|......
T Consensus        58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F  137 (330)
T PF11707_consen   58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF  137 (330)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence            7788888988888889999999999998 444555555543 2 2344555553210    1        2788877766


Q ss_pred             HHHHhc-CCHHHHHHHHH-cCChHHHHHHHhcCchhHHHHHHHHHHH-hcCCC--CHHHHHHHHHcCChHHHHhhccCCC
Q 013228          275 ISNITA-GNSEHIQAVID-AGLIGPLVNLLQNAEFDIKNWAARAISN-ATFGG--THEQIKYLVREGCIKPLCDLLLCAD  349 (447)
Q Consensus       275 l~nl~~-~~~~~~~~l~~-~~~~~~L~~~l~~~~~~v~~~a~~aL~~-l~~~~--~~~~~~~l~~~~~l~~L~~ll~~~~  349 (447)
                      +..+.. +++.....+++ .+.+..+.+-+..+++++....+.+|.. +....  .+.....+.+...+..|..+....+
T Consensus       138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~  217 (330)
T PF11707_consen  138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG  217 (330)
T ss_pred             HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence            555554 66777777765 5678888888888889999999999885 44332  2333445566678899999888877


Q ss_pred             H----HHHHHHHHHHHHHHHhh
Q 013228          350 P----EIVTVFLKGLEKILKVG  367 (447)
Q Consensus       350 ~----~~~~~a~~~l~~l~~~~  367 (447)
                      +    .+...+-+.|..++...
T Consensus       218 ~~~~~~~~~~vh~fL~~lcT~p  239 (330)
T PF11707_consen  218 EDEKSSVADLVHEFLLALCTDP  239 (330)
T ss_pred             CcccchHHHHHHHHHHHHhcCC
Confidence            7    88889999999988644

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=93.69  E-value=4.5  Score=35.43  Aligned_cols=214  Identities=16%  Similarity=0.169  Sum_probs=122.4

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 013228           44 FVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLAS--PSDDIREQAVCALGNVAADSARCRDLVL  121 (447)
Q Consensus        44 L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~i~~~a~~~L~~l~~~~~~~~~~~~  121 (447)
                      |=..|.+++ +.+|..|+..|..+...-+..   .....-+..|+.+..+  .+......++.++..|.....-..    
T Consensus         4 Lg~~Ltsed-~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~----   75 (262)
T PF14500_consen    4 LGEYLTSED-PIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSP----   75 (262)
T ss_pred             hhhhhCCCC-HHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCCh----
Confidence            445678888 899999999999887644322   1222335566665543  456666666777777774332111    


Q ss_pred             hcCCHHHHHHHhcc-----ccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhcc-CChhHHHHHHHHHHHhcc
Q 013228          122 SEEALIPLLTQLNK-----HAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHS-NDKEVMTDACRALFYLSE  195 (447)
Q Consensus       122 ~~~~l~~l~~~l~~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~-~~~~v~~~al~~l~~l~~  195 (447)
                        +....+++.+.+     ......|..+...+..+..+............+..+++.+.. .||.-...+...+..+..
T Consensus        76 --~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~  153 (262)
T PF14500_consen   76 --ESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ  153 (262)
T ss_pred             --hhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence              113333333322     223456777777777777654211122235667777777764 478777777776666654


Q ss_pred             CCcHHHHHHHHhCcHHHHHHhcC---------CC-Cc--hhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCC
Q 013228          196 GTNDEIQAVIEAGVCPRLVELLG---------HP-SP--SVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNH  263 (447)
Q Consensus       196 ~~~~~~~~~~~~~~~~~L~~lL~---------~~-~~--~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~  263 (447)
                      .-+.       ....+-+...+.         .+ ++  -.+..--..|.+....++...     .-.++.+++-|.++ 
T Consensus       154 ~~~~-------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~-  220 (262)
T PF14500_consen  154 EFDI-------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDST-  220 (262)
T ss_pred             hccc-------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCC-
Confidence            3321       122233333321         11 11  122333334444444444332     25788999999999 


Q ss_pred             chhHHHHHHHHHHHHhc
Q 013228          264 KKSIKTDACWTISNITA  280 (447)
Q Consensus       264 ~~~v~~~a~~~l~nl~~  280 (447)
                      ...+|..+..+|..++.
T Consensus       221 ~~~~K~D~L~tL~~c~~  237 (262)
T PF14500_consen  221 SPSVKLDSLQTLKACIE  237 (262)
T ss_pred             CcHHHHHHHHHHHHHHH
Confidence            88899999999988776

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=93.57  E-value=7.4  Score=37.54  Aligned_cols=107  Identities=13%  Similarity=0.098  Sum_probs=75.1

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHH
Q 013228           39 GVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRD  118 (447)
Q Consensus        39 ~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~  118 (447)
                      |.+..+++.+.+++ ..||..++.+|.-++.. -.-.+..+-.|.+..|.+-+-+..+.+|..|+.+|+.+-.....-  
T Consensus        91 ~~~~h~lRg~eskd-k~VR~r~lqila~~~d~-v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne--  166 (885)
T COG5218          91 GTFYHLLRGTESKD-KKVRKRSLQILALLSDV-VREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE--  166 (885)
T ss_pred             HHHHHHHhcccCcc-hhHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh--
Confidence            45666667777888 89999999999988873 333334455577788887777788999999999999987443321  


Q ss_pred             HHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCC
Q 013228          119 LVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAG  155 (447)
Q Consensus       119 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  155 (447)
                         +......+...+..+++.++++.++   .++..+
T Consensus       167 ---en~~~n~l~~~vqnDPS~EVRr~al---lni~vd  197 (885)
T COG5218         167 ---ENRIVNLLKDIVQNDPSDEVRRLAL---LNISVD  197 (885)
T ss_pred             ---HHHHHHHHHHHHhcCcHHHHHHHHH---HHeeeC
Confidence               1123456677777788888988765   455444

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=93.54  E-value=0.45  Score=39.34  Aligned_cols=110  Identities=10%  Similarity=0.164  Sum_probs=74.4

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHH-HcCCChhhHHHHHhCCChHHHHHhhCC---------CCHHHHHHHHHHHHHh
Q 013228           40 VVPRFVEFLMREDYPQLQFEAAWALKN-IVSGTSEDTKVVIDHGAVPIFVKLLAS---------PSDDIREQAVCALGNV  109 (447)
Q Consensus        40 ~v~~L~~ll~~~~~~~v~~~a~~~L~~-l~~~~~~~~~~~~~~~~i~~L~~ll~~---------~~~~i~~~a~~~L~~l  109 (447)
                      -...+++.+.+... ..  ..+..|.. +-.........|++.||+..|+.+|..         .+......++.+|..+
T Consensus        67 ~p~~~i~~L~~~~~-~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal  143 (187)
T PF06371_consen   67 SPEWYIKKLKSRPS-TS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL  143 (187)
T ss_dssp             HHHHHHHHHTTT---HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHccCc-cH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence            34556676766552 22  22222222 222344677888889999999998853         3557888999999999


Q ss_pred             hcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhc
Q 013228          110 AADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFC  153 (447)
Q Consensus       110 ~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~  153 (447)
                      ..........+...+.+..++..| .+++..++..++..|..+|
T Consensus       144 ~n~~~G~~~v~~~~~~v~~i~~~L-~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  144 MNTKYGLEAVLSHPDSVNLIALSL-DSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             TSSHHHHHHHHCSSSHHHHHHHT---TTSHHHHHHHHHHHHHHH
T ss_pred             HccHHHHHHHHcCcHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence            877766555665677888888888 6788899999999998876

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=93.50  E-value=13  Score=40.26  Aligned_cols=148  Identities=15%  Similarity=0.112  Sum_probs=91.6

Q ss_pred             CcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHH
Q 013228          208 GVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQ  287 (447)
Q Consensus       208 ~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~  287 (447)
                      +++|.|..-|.+.+..+|..|...++.+......... =-........+.-+.+. +..+|.+++....++...++....
T Consensus       259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~~~~~~~  336 (1266)
T KOG1525|consen  259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLNNPSIAK  336 (1266)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhcCchhhh
Confidence            7889999999999999999999999999875543321 00113344555555666 889999999998888776555332


Q ss_pred             HHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 013228          288 AVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKV  366 (447)
Q Consensus       288 ~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~  366 (447)
                      ...   ....+..  .+.|+++|....-++..+..   ......+... .+..+.+-+.+....++..|+..|..+.+.
T Consensus       337 ~~~---~~~~l~~--~~~D~~~rir~~v~i~~~~v---~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~  406 (1266)
T KOG1525|consen  337 AST---ILLALRE--RDLDEDVRVRTQVVIVACDV---MKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN  406 (1266)
T ss_pred             HHH---HHHHHHh--hcCChhhhheeeEEEEEeeh---hHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            211   1122221  23355554433322221111   1111222223 566666777888899999999999999874

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.48  E-value=9  Score=39.78  Aligned_cols=394  Identities=15%  Similarity=0.132  Sum_probs=197.0

Q ss_pred             ccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcC---CChhhHHHHHhC
Q 013228            5 VWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVS---GTSEDTKVVIDH   81 (447)
Q Consensus         5 l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~---~~~~~~~~~~~~   81 (447)
                      |.+++.+++...+..+.++-+.. +++-...-+.--+|.++.-+..-. ..+|...+.+|--...   .-|+ +.     
T Consensus       476 LkaenkdlqaeVlnrmfkIftsh-peNYricqelytvpllvlnmegfP-sslqvkiLkilEyAVtvvncvPe-qE-----  547 (2799)
T KOG1788|consen  476 LKAENKDLQAEVLNRMFKIFTSH-PENYRICQELYTVPLLVLNMEGFP-SSLQVKILKILEYAVTVVNCVPE-QE-----  547 (2799)
T ss_pred             HHhcCcchhhHHHHHHHHHhccC-hHHhhHHhhccccchhhhhhcCCC-hHHHHHHHHHHHHHHhhhccCcH-HH-----
Confidence            45667777777777777776543 444444445566788877776555 4666666555443221   0111 11     


Q ss_pred             CChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccc-----cchhHHHHHHHHHHHhcCC
Q 013228           82 GAVPIFVKLLASP-SDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKH-----AKLSMLRIATWTLSNFCAG  155 (447)
Q Consensus        82 ~~i~~L~~ll~~~-~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~-----~~~~~~~~a~~~L~~l~~~  155 (447)
                        +-.|+-+|+.+ ...++...+.....|...+..+++.+.+.|.++.+...++++     +|..   ..   .......
T Consensus       548 --LlSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdqy---sg---vsehydr  619 (2799)
T KOG1788|consen  548 --LLSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQY---SG---VSEHYDR  619 (2799)
T ss_pred             --HHHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcchh---hh---HHHHhhc
Confidence              22355566654 455666666677777777777888888999988888877542     1210   00   0111111


Q ss_pred             C-CCCChhhH---hhhHHHHHHhhccCC--hhHH------HHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCch
Q 013228          156 K-PKPIFDQV---RPALPALAQLVHSND--KEVM------TDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPS  223 (447)
Q Consensus       156 ~-~~~~~~~~---~~~l~~l~~ll~~~~--~~v~------~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~  223 (447)
                      . ........   ...+-.--.+.+++.  ..+.      ...-.+|..+..+..++.+.+.+..++..++.++  -+++
T Consensus       620 npss~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpfl--inde  697 (2799)
T KOG1788|consen  620 NPSSPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFL--INDE  697 (2799)
T ss_pred             CCCCchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEee--echH
Confidence            1 11111000   001100111222211  1111      1122355556666666667788888888888888  4556


Q ss_pred             hHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCC-----------chhHHHHHHHHHHHHhcCCHHHHHHHHHc
Q 013228          224 VLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNH-----------KKSIKTDACWTISNITAGNSEHIQAVIDA  292 (447)
Q Consensus       224 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~-----------~~~v~~~a~~~l~nl~~~~~~~~~~l~~~  292 (447)
                      -|...++++..+....+.+..    +.-+-.++..|+++.           .........+++..+..-+......+-+.
T Consensus       698 hRSslLrivscLitvdpkqvh----hqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgea  773 (2799)
T KOG1788|consen  698 HRSSLLRIVSCLITVDPKQVH----HQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEA  773 (2799)
T ss_pred             HHHHHHHHHHHHhccCccccc----HHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhcc
Confidence            677888888888765554221    122334555555521           11233444555555543333334445566


Q ss_pred             CChHHHHHHHhc----------CchhHHHHHHHHHH---HhcCCCCHHHHH-------------HHHHcCC---------
Q 013228          293 GLIGPLVNLLQN----------AEFDIKNWAARAIS---NATFGGTHEQIK-------------YLVREGC---------  337 (447)
Q Consensus       293 ~~~~~L~~~l~~----------~~~~v~~~a~~aL~---~l~~~~~~~~~~-------------~l~~~~~---------  337 (447)
                      +++..|...|..          +|.-+-.+-...|.   .++...++.++.             .+.+.|.         
T Consensus       774 tGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavcenasNrmklhtvITsqtftsLLresgllcvnler~v  853 (2799)
T KOG1788|consen  774 TGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHV  853 (2799)
T ss_pred             ccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHH
Confidence            777766665541          12111111122221   112111222222             2223331         


Q ss_pred             hHHHHh-hccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHH
Q 013228          338 IKPLCD-LLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILE  416 (447)
Q Consensus       338 l~~L~~-ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~  416 (447)
                      +..|.+ .++.-.+.....-..++..+++...+.-.-..+.+..++..+.+-..|..+.|.+..-...|+++-.-..+++
T Consensus       854 iqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lle  933 (2799)
T KOG1788|consen  854 IQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLE  933 (2799)
T ss_pred             HHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHH
Confidence            111111 0111111111122233445555443322112224667777888888999999988877777887777777776


Q ss_pred             HhcC
Q 013228          417 TYWC  420 (447)
Q Consensus       417 ~~~~  420 (447)
                      ....
T Consensus       934 SlaR  937 (2799)
T KOG1788|consen  934 SLAR  937 (2799)
T ss_pred             HHhh
Confidence            6544

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=93.34  E-value=2.7  Score=39.69  Aligned_cols=230  Identities=14%  Similarity=0.058  Sum_probs=132.6

Q ss_pred             CcccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228            1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID   80 (447)
Q Consensus         1 lv~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (447)
                      |+.++.|+|+.-|...-..|+++-..  -...+..+...+...+.+.+............++.++.+..+...--+.-..
T Consensus       138 Ll~l~~S~D~rER~~lk~~l~~iy~k--~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~  215 (409)
T PF01603_consen  138 LLELFDSPDPRERDYLKTILHRIYGK--FPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHK  215 (409)
T ss_dssp             HHHTTTSSTHHHHHHHHHHHHHHHHH---TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHH
Confidence            35678999999999999999998876  3344455555577788888875554667788889999988753311111111


Q ss_pred             CCChHHHHHhhCCCC-HHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCC-C
Q 013228           81 HGAVPIFVKLLASPS-DDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKP-K  158 (447)
Q Consensus        81 ~~~i~~L~~ll~~~~-~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~-~  158 (447)
                      .=....|+.+...+. ......-..++..++..++.....+     +..++..- ...+..-...-+.-+..+...-+ .
T Consensus       216 ~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~-----i~~llk~W-P~t~s~Kev~FL~el~~il~~~~~~  289 (409)
T PF01603_consen  216 QFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPV-----IKGLLKHW-PKTNSQKEVLFLNELEEILEVLPPE  289 (409)
T ss_dssp             HHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHH-----HHHHHHHS--SS-HHHHHHHHHHHHHHHTT--HH
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhC-CCCCchhHHHHHHHHHHHHHhcCHH
Confidence            112244556655542 3445556666666665555432222     34444444 33333333334445555554332 1


Q ss_pred             CChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHh---CcHHHHHHhcCC-----CCchhHhHHHH
Q 013228          159 PIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEA---GVCPRLVELLGH-----PSPSVLTRALQ  230 (447)
Q Consensus       159 ~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~---~~~~~L~~lL~~-----~~~~v~~~a~~  230 (447)
                      .-......+...+...+.+++..|.+.|+..+.|     + ....++..   .+++.+...|..     =+..++..|..
T Consensus       290 ~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n-----~-~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~  363 (409)
T PF01603_consen  290 EFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN-----E-YFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQN  363 (409)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS-----H-HHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC-----H-HHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            1122335667778888899999998888865532     1 11222222   356777766633     24678999999


Q ss_pred             HHHHhhcCChhhHH
Q 013228          231 TVVNIAAGDDFQTQ  244 (447)
Q Consensus       231 ~l~~l~~~~~~~~~  244 (447)
                      ++..+...++...+
T Consensus       364 vl~~l~~~d~~lf~  377 (409)
T PF01603_consen  364 VLKILMEMDPKLFD  377 (409)
T ss_dssp             HHHHHHTTSHHHHH
T ss_pred             HHHHHHHhCHHHHH
Confidence            99888877764433

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=93.16  E-value=5.1  Score=34.49  Aligned_cols=202  Identities=20%  Similarity=0.163  Sum_probs=116.2

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 013228           41 VPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV  120 (447)
Q Consensus        41 v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~  120 (447)
                      ++.|+.-+....+++.+...+.+|..++.++.....     -++..|..+...+....+..+.+.+..+...++...   
T Consensus         2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---   73 (234)
T PF12530_consen    2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---   73 (234)
T ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence            445555344444489999999999999985412222     234667777777777777778888888875554322   


Q ss_pred             HhcCCHHHHHHHh---------ccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhh-ccCChhHHHHHHHHH
Q 013228          121 LSEEALIPLLTQL---------NKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLV-HSNDKEVMTDACRAL  190 (447)
Q Consensus       121 ~~~~~l~~l~~~l---------~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~v~~~al~~l  190 (447)
                         +.+..++..+         ..+...+.......++..+|...|+    ....+++.+..++ ++.++.++..++.++
T Consensus        74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l  146 (234)
T PF12530_consen   74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL  146 (234)
T ss_pred             ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence               2344444441         0112234444456788888887655    4466788888888 788899999999999


Q ss_pred             HHhccCCcHHHHHHHHhCcHHHHHHhcCC-CCchhHhHHHHHHHHhhcCChh-hHHHHHhcCChHHHHHhhccC
Q 013228          191 FYLSEGTNDEIQAVIEAGVCPRLVELLGH-PSPSVLTRALQTVVNIAAGDDF-QTQCIINCGALPYLLGLLIHN  262 (447)
Q Consensus       191 ~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~~~v~~~a~~~l~~l~~~~~~-~~~~~~~~~~l~~l~~~l~~~  262 (447)
                      ..++...-  .+ +.  .....+.+-++. ..+.+....+..+..+..+.-+ .........++..+-++..+.
T Consensus       147 ~~Lc~~~v--vd-~~--s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~  215 (234)
T PF12530_consen  147 APLCEAEV--VD-FY--SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSS  215 (234)
T ss_pred             HHHHHHhh--cc-HH--HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccc
Confidence            99983221  11 11  223444444433 3344444444444433322211 111123334556666666555

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=93.14  E-value=1.3  Score=36.06  Aligned_cols=110  Identities=19%  Similarity=0.211  Sum_probs=73.0

Q ss_pred             HHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHh-------------------CcHHHHHHhcCC-CCchhHhHHHH
Q 013228          171 LAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEA-------------------GVCPRLVELLGH-PSPSVLTRALQ  230 (447)
Q Consensus       171 l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~-------------------~~~~~L~~lL~~-~~~~v~~~a~~  230 (447)
                      +.-++.++++++|..|+.++..+.++........-+.                   .+-..|+..|.. .+..+....++
T Consensus        45 lt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK  124 (182)
T PF13251_consen   45 LTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLK  124 (182)
T ss_pred             hHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence            4456778899999999999999987654333221111                   112234444543 56778889999


Q ss_pred             HHHHhhcCChhhHHH-HHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcC
Q 013228          231 TVVNIAAGDDFQTQC-IINCGALPYLLGLLIHNHKKSIKTDACWTISNITAG  281 (447)
Q Consensus       231 ~l~~l~~~~~~~~~~-~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~  281 (447)
                      ++..++...+..+-. -+-..++..+..++.+. |..++..+..+++.+...
T Consensus       125 ~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~-d~~v~v~~l~~~~~l~s~  175 (182)
T PF13251_consen  125 CLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHR-DPNVRVAALSCLGALLSV  175 (182)
T ss_pred             HHHHHHccCChhhcCHhHHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcC
Confidence            999999887754221 11123445555666777 999999999999988763

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=92.92  E-value=2.6  Score=31.77  Aligned_cols=99  Identities=11%  Similarity=0.209  Sum_probs=67.4

Q ss_pred             chhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHH
Q 013228          306 EFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQ  385 (447)
Q Consensus       306 ~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  385 (447)
                      +...--....-|.+++.. ++.....     +++.|..=|++.++.+...++.+|..++..+...            |..
T Consensus        14 ~~p~pgy~~~Eia~~t~~-s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~------------f~~   75 (122)
T cd03572          14 DEPTPGYLYEEIAKLTRK-SVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD------------FKR   75 (122)
T ss_pred             CCCCchHHHHHHHHHHHc-CHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH------------HHH
Confidence            333334445556666665 3333333     5788888888888999899999999999887543            444


Q ss_pred             HHH-HhchHHHHHHHhcC--------CCHHHHHHHHHHHHHhcCCC
Q 013228          386 LVE-EAEGLEKIENLRSH--------DNDEIHEKSVKILETYWCGR  422 (447)
Q Consensus       386 ~i~-~~~~~~~l~~l~~~--------~~~~v~~~a~~~l~~~~~~~  422 (447)
                      .+. ....++.+.+....        .+..|+..|.+++.-.|.++
T Consensus        76 ~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~~~  121 (122)
T cd03572          76 ELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFSYS  121 (122)
T ss_pred             HHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhccC
Confidence            444 34556666666552        35789999999999988765

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=92.91  E-value=1.1  Score=36.14  Aligned_cols=112  Identities=18%  Similarity=0.165  Sum_probs=76.0

Q ss_pred             CcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHh--cCChHHHHHhhccCCchhHHHHHHHHHHHHhc---CC
Q 013228          208 GVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIIN--CGALPYLLGLLIHNHKKSIKTDACWTISNITA---GN  282 (447)
Q Consensus       208 ~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~--~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~---~~  282 (447)
                      .....+..+|+++++.-|..++..+..++..++.  +.+.+  ...+..++.+++.++...+++.++.++..+..   +.
T Consensus        25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~  102 (165)
T PF08167_consen   25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK  102 (165)
T ss_pred             HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            4567788999999999999999999988876532  22222  24678899999887678889999999988875   34


Q ss_pred             HHHHHHHHHc---CChHHHHHHHhcCchhHHHHHHHHHHHhcCC
Q 013228          283 SEHIQAVIDA---GLIGPLVNLLQNAEFDIKNWAARAISNATFG  323 (447)
Q Consensus       283 ~~~~~~l~~~---~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~  323 (447)
                      ++..+++...   ++++.++.+++.  ......++.+|..+...
T Consensus       103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~  144 (165)
T PF08167_consen  103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH  144 (165)
T ss_pred             CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence            4444444432   234444444443  45666777777766553

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=92.86  E-value=4.8  Score=40.74  Aligned_cols=141  Identities=14%  Similarity=0.135  Sum_probs=74.5

Q ss_pred             hhHHHHHHHHHHHhccCCcHHHHHHHHh--------CcHHHHHHhcC----CCCchhHhHHHHHHHHhhcCChhhHHHHH
Q 013228          180 KEVMTDACRALFYLSEGTNDEIQAVIEA--------GVCPRLVELLG----HPSPSVLTRALQTVVNIAAGDDFQTQCII  247 (447)
Q Consensus       180 ~~v~~~al~~l~~l~~~~~~~~~~~~~~--------~~~~~L~~lL~----~~~~~v~~~a~~~l~~l~~~~~~~~~~~~  247 (447)
                      .+....|+..|+-+..-++.+.+ +...        .++..++..-.    --+++++..|+.+|-|+++..+......+
T Consensus       623 ~d~~~~Al~vL~i~t~iP~iq~~-La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i  701 (1516)
T KOG1832|consen  623 HDLLQYALGVLHIVTSIPDIQKA-LAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCVCPPPTTRPSTI  701 (1516)
T ss_pred             hHHHHHHHhheeeeEecchHHHH-HHHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhhheeecCCCCcchhhh
Confidence            34556666666666555544432 2211        12333332221    13688999999999999988765433222


Q ss_pred             hcCChHHHHHhhccCCchhHHHH--H-HHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCc-----hhHHHHHHHHHHH
Q 013228          248 NCGALPYLLGLLIHNHKKSIKTD--A-CWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAE-----FDIKNWAARAISN  319 (447)
Q Consensus       248 ~~~~l~~l~~~l~~~~~~~v~~~--a-~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~-----~~v~~~a~~aL~~  319 (447)
                              .....+..++.....  . ...|.+.   -...+..+...++|..|+++++...     ..+|..|+.+|.-
T Consensus       702 --------~~v~S~~g~~r~~l~~~~ks~~le~~---l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~G  770 (1516)
T KOG1832|consen  702 --------VAVGSQSGDRRIFLGAGTKSAKLEQV---LRQMWEAVRGNDGIKILLKLLQYKNPPTTADCIRALACRVLLG  770 (1516)
T ss_pred             --------hhccccCCCccccccCCCchHHHHHH---HHHHHHHHhcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhc
Confidence                    111111101111100  0 0011111   0122233345678999999998543     4689999999999


Q ss_pred             hcCCCCHHHHHHHHH
Q 013228          320 ATFGGTHEQIKYLVR  334 (447)
Q Consensus       320 l~~~~~~~~~~~l~~  334 (447)
                      ++...  ..++.+..
T Consensus       771 LaR~~--tVrQIltK  783 (1516)
T KOG1832|consen  771 LARDD--TVRQILTK  783 (1516)
T ss_pred             cccCc--HHHHHHHh
Confidence            99854  44555444

>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=92.84  E-value=0.76  Score=42.93  Aligned_cols=169  Identities=11%  Similarity=0.083  Sum_probs=91.3

Q ss_pred             HHHhhcCChhhHHHHHhcCChHHHHHhhccCC---chhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchh
Q 013228          232 VVNIAAGDDFQTQCIINCGALPYLLGLLIHNH---KKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFD  308 (447)
Q Consensus       232 l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~---~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~  308 (447)
                      ++..|.+.|....     .+...|..+|....   ++.+|...+.+|.-|-..+     .+.-..++..+..++..++..
T Consensus         3 ~aqv~~~yp~~~a-----~FP~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk~-----~i~~~~LL~lff~l~~~~dk~   72 (616)
T KOG2229|consen    3 VAQVCPCYPEVLA-----NFPSELKDLLRTNHTVLPPELREKIVKALILLRNKN-----LIVAEDLLELFFPLLRCGDKN   72 (616)
T ss_pred             hhhcccccHHHHH-----hhhHHHHHHHHhccccCCHHHHHHHHHHHHHHhccC-----cCCHHHHHHHHHHHHhcCchh
Confidence            3445555554433     35556777776442   6788888888877764322     122223566777788888888


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHH
Q 013228          309 IKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVE  388 (447)
Q Consensus       309 v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~  388 (447)
                      .|..+..-+.....+.+.....-=.+..+-..+..+|+.+++.--..++..+..|-+..-..                  
T Consensus        73 lRkllythiv~~Ikn~n~~~kn~klnkslq~~~fsml~~~d~~~ak~a~~~~~eL~kr~iW~------------------  134 (616)
T KOG2229|consen   73 LRKLLYTHIVTTIKNINKKHKNDKLNKSLQAFMFSMLDQSDSTAAKMALDTMIELYKRNIWN------------------  134 (616)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcccc------------------
Confidence            87766554443333222111111112223456788899888865556666666665433222                  


Q ss_pred             HhchHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 013228          389 EAEGLEKIENLRSHDNDEIHEKSVKILETYWCGRVAGPQPGNE  431 (447)
Q Consensus       389 ~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~  431 (447)
                      ....+..+..-.-|.++.|.-.+   |.-|+..++++++.+.+
T Consensus       135 d~~tV~i~~~acf~~~~ki~vs~---l~FfL~~D~~dee~dsd  174 (616)
T KOG2229|consen  135 DSKTVNIITTACFSKVPKILVSG---LRFFLGADNEDEEDDSD  174 (616)
T ss_pred             cchhHHHHHHHHhccCcHHHHhh---hHHhccCCccccccccc
Confidence            22223333333556778776444   44555655544444443

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=92.81  E-value=20  Score=40.46  Aligned_cols=263  Identities=11%  Similarity=0.077  Sum_probs=141.1

Q ss_pred             CCCHHHHHHHHHHHHHHHccC--CCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCCh
Q 013228            7 SDDNNMQLEATTHIRKLLSNA--RSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAV   84 (447)
Q Consensus         7 s~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i   84 (447)
                      +.+..+.+.|+..|+.++..-  ..+....=.+...+.++..++.+..+.++++..++++.++.....    .-++. +-
T Consensus      1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~----~nIkS-GW 1222 (1780)
T PLN03076       1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV----NNVKS-GW 1222 (1780)
T ss_pred             CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH----hhhhc-Cc
Confidence            446779999999999887642  011112223345778888888766558999999999999876322    22233 45


Q ss_pred             HHHHHhhC----CCCHHHHHHHHHHHHHhhcCChhHHHHHHh--cC----CHHHHHHHhccccchhHHHHHHHHHHHh--
Q 013228           85 PIFVKLLA----SPSDDIREQAVCALGNVAADSARCRDLVLS--EE----ALIPLLTQLNKHAKLSMLRIATWTLSNF--  152 (447)
Q Consensus        85 ~~L~~ll~----~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~--~~----~l~~l~~~l~~~~~~~~~~~a~~~L~~l--  152 (447)
                      +.++.++.    +.++.+.+.+..++..++.+.-   ..+..  .+    .+..+.....+..+.++--.|+..|+.+  
T Consensus      1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f---~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~ 1299 (1780)
T PLN03076       1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYF---PYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCAT 1299 (1780)
T ss_pred             HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhh---hhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHH
Confidence            66666554    4678888888888887764311   11110  12    2334444443333344444444444433  


Q ss_pred             --cCCC-----C------------------C------CChhhHhhhHH---HHHHhhccCChhHHHHHHHHHHHhccCC-
Q 013228          153 --CAGK-----P------------------K------PIFDQVRPALP---ALAQLVHSNDKEVMTDACRALFYLSEGT-  197 (447)
Q Consensus       153 --~~~~-----~------------------~------~~~~~~~~~l~---~l~~ll~~~~~~v~~~al~~l~~l~~~~-  197 (447)
                        +...     .                  .      ........-+|   .+..+..+..++||..|+..|..+.... 
T Consensus      1300 ~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG 1379 (1780)
T PLN03076       1300 KLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHG 1379 (1780)
T ss_pred             HHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhh
Confidence              1110     0                  0      00001122334   3444456788999999999988777332 


Q ss_pred             ----cHHHHHHHHhCcHHHHHHhcCCC------------------C-ch----hHhHHHHHHHHhhc---CChhhHHHHH
Q 013228          198 ----NDEIQAVIEAGVCPRLVELLGHP------------------S-PS----VLTRALQTVVNIAA---GDDFQTQCII  247 (447)
Q Consensus       198 ----~~~~~~~~~~~~~~~L~~lL~~~------------------~-~~----v~~~a~~~l~~l~~---~~~~~~~~~~  247 (447)
                          ++....+.. +++-.+...++..                  + .+    ....+..+|..++.   ..-.....++
T Consensus      1380 ~~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L 1458 (1780)
T PLN03076       1380 HLFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLL 1458 (1780)
T ss_pred             ccCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                122222333 3333333333210                  0 00    12333333433332   2212222222


Q ss_pred             hcCChHHHHHhhccCCchhHHHHHHHHHHHHhc
Q 013228          248 NCGALPYLLGLLIHNHKKSIKTDACWTISNITA  280 (447)
Q Consensus       248 ~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~  280 (447)
                       .+++..|..++..+ +..+.+.+..+|.++..
T Consensus      1459 -~~~l~ll~~ci~q~-n~~la~ig~~~l~~li~ 1489 (1780)
T PLN03076       1459 -KKVLMLLVSFIKRP-HQSLAGIGIAAFVRLMS 1489 (1780)
T ss_pred             -HHHHHHHHHHHcCc-hHHHHHHHHHHHHHHHH
Confidence             25666666667777 88888888888888875

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=92.63  E-value=5.1  Score=33.11  Aligned_cols=141  Identities=16%  Similarity=0.155  Sum_probs=88.5

Q ss_pred             ccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCC
Q 013228            3 AGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHG   82 (447)
Q Consensus         3 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~   82 (447)
                      +...+++..++..|+..+..+.... --+.     ..++|.|+.+..+++ +.++..|...+..+....+.....-...|
T Consensus        15 ~~~~~~~~~vr~~Al~~l~~il~qG-LvnP-----~~cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v~~~~~~g   87 (187)
T PF12830_consen   15 ELCLSSDDSVRLAALQVLELILRQG-LVNP-----KQCVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLVESRYSEG   87 (187)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHhcC-CCCh-----HHHHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            4556788899999999998887653 2111     127999999999988 99999999999999886665544433333


Q ss_pred             ChHHHHHhhC---CC-CHHH---HHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcccc-------chhHHHHHHHH
Q 013228           83 AVPIFVKLLA---SP-SDDI---REQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHA-------KLSMLRIATWT  148 (447)
Q Consensus        83 ~i~~L~~ll~---~~-~~~i---~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~-------~~~~~~~a~~~  148 (447)
                       +..-..+-.   .+ ....   ....+..+..+...+...|..+     +..++..+....       ...-.....++
T Consensus        88 -i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l~~~~Fl  161 (187)
T PF12830_consen   88 -IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDLDFLLFL  161 (187)
T ss_pred             -HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHHHHHHHH
Confidence             332222221   11 1111   4555666666766555555554     556666663322       33445556667


Q ss_pred             HHHhcCCC
Q 013228          149 LSNFCAGK  156 (447)
Q Consensus       149 L~~l~~~~  156 (447)
                      ..||+.-+
T Consensus       162 a~nLA~l~  169 (187)
T PF12830_consen  162 AENLATLP  169 (187)
T ss_pred             HHHHhcCC
Confidence            77776554

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=92.60  E-value=1.8  Score=34.68  Aligned_cols=148  Identities=10%  Similarity=0.098  Sum_probs=83.8

Q ss_pred             HhhhHHHHHHhhccC-ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhh
Q 013228          164 VRPALPALAQLVHSN-DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQ  242 (447)
Q Consensus       164 ~~~~l~~l~~ll~~~-~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~  242 (447)
                      ...+++.|..+++.+ +..++..++++++.+..-++.+.+.+....  +.  ..-...+......... ........+  
T Consensus         8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~--~~--~~~~~~~~~~~~~~l~-~~~~~~~~e--   80 (160)
T PF11865_consen    8 YPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL--DS--KSSENSNDESTDISLP-MMGISPSSE--   80 (160)
T ss_pred             hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC--Cc--cccccccccchhhHHh-hccCCCchH--
Confidence            467788899998865 689999999999999977776544221110  10  0001111111111111 111111122  


Q ss_pred             HHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhc
Q 013228          243 TQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNAT  321 (447)
Q Consensus       243 ~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~  321 (447)
                        ...-..++..|+.+|+++.-..-...++.++.++.......+-.++.. ++|.+++.+...+...++...+-|+.+.
T Consensus        81 --e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~-viP~~l~~i~~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   81 --EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQ-VIPIFLRVIRTCPDSLREFYFQQLADLV  156 (160)
T ss_pred             --HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHH-HhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence              233334667888888877444445566777777764211112223333 8999999998766677777776666654

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=92.57  E-value=0.81  Score=32.58  Aligned_cols=72  Identities=14%  Similarity=0.153  Sum_probs=57.1

Q ss_pred             HHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHH
Q 013228          210 CPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSE  284 (447)
Q Consensus       210 ~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~  284 (447)
                      +...+..+.++.+.+|..++..|..+.....  ....-..+++..+...++++ ++.+--.|..+++.++...++
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~p~   76 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRHPD   76 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHChH
Confidence            4566777888999999999999999997665  11122236778888999999 999999999999999885544

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=92.43  E-value=1.1  Score=35.09  Aligned_cols=72  Identities=17%  Similarity=0.228  Sum_probs=60.4

Q ss_pred             ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcC-CCHHHHHHHHHHH
Q 013228          337 CIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSH-DNDEIHEKSVKIL  415 (447)
Q Consensus       337 ~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~-~~~~v~~~a~~~l  415 (447)
                      ++..|..-+.+.++.++..|+..|..++++++..            |...+....+++.|..+... .++.|+.++..++
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~------------fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li  105 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKR------------FHQEVASRDFTQELKKLINDRVHPTVKEKLREVV  105 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH------------HHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence            4666777778889999999999999999988764            56667778888889988776 7899999999999


Q ss_pred             HHhcC
Q 013228          416 ETYWC  420 (447)
Q Consensus       416 ~~~~~  420 (447)
                      ..+..
T Consensus       106 ~~W~~  110 (144)
T cd03568         106 KQWAD  110 (144)
T ss_pred             HHHHH
Confidence            99754

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=91.93  E-value=8.1  Score=33.86  Aligned_cols=224  Identities=15%  Similarity=0.067  Sum_probs=131.2

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcc-ccchhHHHHHHHHHHHhcCCCCCCChhhH
Q 013228           86 IFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNK-HAKLSMLRIATWTLSNFCAGKPKPIFDQV  164 (447)
Q Consensus        86 ~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  164 (447)
                      .|-..|.++++.+|..++..|+.+...-+..  . ....-+..+++.+.. -.|......++.++..|.... .......
T Consensus         3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~--~-L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~-~~~~~~~   78 (262)
T PF14500_consen    3 SLGEYLTSEDPIIRAKALELLSEVLERLPPD--F-LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMK-NFSPESA   78 (262)
T ss_pred             chhhhhCCCCHHHHHHHHHHHHHHHHhCCHh--h-ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCc-CCChhhH
Confidence            4556778899999999999999887554421  1 222234555554422 134555555677777777443 2222233


Q ss_pred             hhhHHHHHHhhc--cCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-CCchhHhHHHHHHHHhhcCChh
Q 013228          165 RPALPALAQLVH--SNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH-PSPSVLTRALQTVVNIAAGDDF  241 (447)
Q Consensus       165 ~~~l~~l~~ll~--~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~~~v~~~a~~~l~~l~~~~~~  241 (447)
                      ..++..+.+-..  +-....|..+...+..+..+....... ...+++..+++.+.. .+|+-...+...+..+...-+-
T Consensus        79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~-~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~  157 (262)
T PF14500_consen   79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQS-MGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI  157 (262)
T ss_pred             HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHh-chhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence            444444444322  334667888888888887654332221 223567777777754 6677777777777666543331


Q ss_pred             hHHHHHhcCChHHHHHhhc--------cCC-c--hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHH
Q 013228          242 QTQCIINCGALPYLLGLLI--------HNH-K--KSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIK  310 (447)
Q Consensus       242 ~~~~~~~~~~l~~l~~~l~--------~~~-~--~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~  310 (447)
                             ....+-+.+.+.        .+. +  .-.+......|.++...++...     .-.+|.|++-|.++.+.++
T Consensus       158 -------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~~~~~K  225 (262)
T PF14500_consen  158 -------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDSTSPSVK  225 (262)
T ss_pred             -------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCCCcHHH
Confidence                   123333333331        111 1  2234455556666555544322     2378899999999999999


Q ss_pred             HHHHHHHHHhcCCCCH
Q 013228          311 NWAARAISNATFGGTH  326 (447)
Q Consensus       311 ~~a~~aL~~l~~~~~~  326 (447)
                      ..++.+|..++..-..
T Consensus       226 ~D~L~tL~~c~~~y~~  241 (262)
T PF14500_consen  226 LDSLQTLKACIENYGA  241 (262)
T ss_pred             HHHHHHHHHHHHHCCH
Confidence            9999999887764433

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=91.78  E-value=1.9  Score=42.44  Aligned_cols=134  Identities=19%  Similarity=0.125  Sum_probs=91.5

Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCC
Q 013228           81 HGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPI  160 (447)
Q Consensus        81 ~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~  160 (447)
                      ..+++.|..-+++.+..+++.++..+...+..-+   ...+...+++.+-.+.....+..++.+++.|+..+...   ..
T Consensus       388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~---lD  461 (700)
T KOG2137|consen  388 EKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR---LD  461 (700)
T ss_pred             HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH---HH
Confidence            4566777777777888999999999888874433   22334455777777766777889999999999988822   22


Q ss_pred             hhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCC
Q 013228          161 FDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPS  221 (447)
Q Consensus       161 ~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~  221 (447)
                      ....-+.+..+.+..+..++.+....+.+..++....... ..+....++|.++.+...+.
T Consensus       462 ~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~  521 (700)
T KOG2137|consen  462 KAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPS  521 (700)
T ss_pred             HHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhccc
Confidence            2223344455666667788999888888887777443332 23455577888887776544

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=91.71  E-value=1.6  Score=34.18  Aligned_cols=73  Identities=19%  Similarity=0.329  Sum_probs=59.7

Q ss_pred             ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhc-CCCHHHHHHHHHHH
Q 013228          337 CIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRS-HDNDEIHEKSVKIL  415 (447)
Q Consensus       337 ~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~-~~~~~v~~~a~~~l  415 (447)
                      ++..|..-+.++++.++..|+..|..+++++...            |...+...++++.|..+.. ..++.|++++..++
T Consensus        42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~------------fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li  109 (142)
T cd03569          42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTH------------FHDEVASREFMDELKDLIKTTKNEEVRQKILELI  109 (142)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHH------------HHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence            5667777788899999999999999999986553            5666777888888888865 67889999999999


Q ss_pred             HHhcCC
Q 013228          416 ETYWCG  421 (447)
Q Consensus       416 ~~~~~~  421 (447)
                      ..+...
T Consensus       110 ~~W~~~  115 (142)
T cd03569         110 QAWALA  115 (142)
T ss_pred             HHHHHH
Confidence            987653

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=91.28  E-value=1.9  Score=33.43  Aligned_cols=72  Identities=15%  Similarity=0.177  Sum_probs=58.3

Q ss_pred             ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcC------CCHHHHHH
Q 013228          337 CIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSH------DNDEIHEK  410 (447)
Q Consensus       337 ~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~------~~~~v~~~  410 (447)
                      ++..|..-+.++++.++..|+..|..+++++...            |...+...+++..+.++...      .++.|+.+
T Consensus        39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~------------fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~k  106 (139)
T cd03567          39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGER------------FHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTK  106 (139)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHH------------HHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHH
Confidence            4666777788999999999999999999987664            56667777788888887743      57899999


Q ss_pred             HHHHHHHhcC
Q 013228          411 SVKILETYWC  420 (447)
Q Consensus       411 a~~~l~~~~~  420 (447)
                      ...++..+-.
T Consensus       107 il~li~~W~~  116 (139)
T cd03567         107 IIELLYSWTL  116 (139)
T ss_pred             HHHHHHHHHH
Confidence            9999998754

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=91.19  E-value=13  Score=34.92  Aligned_cols=186  Identities=11%  Similarity=0.071  Sum_probs=110.7

Q ss_pred             ccCCCHHHHHHHHHHHHHHHccCC--CCchhhhhccCCHHHHHHhhcCCC----CH-H-HHHHHHHHHHHHcCCChhhH-
Q 013228            5 VWSDDNNMQLEATTHIRKLLSNAR--SAPTEEVIPFGVVPRFVEFLMRED----YP-Q-LQFEAAWALKNIVSGTSEDT-   75 (447)
Q Consensus         5 l~s~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~~~~v~~L~~ll~~~~----~~-~-v~~~a~~~L~~l~~~~~~~~-   75 (447)
                      +...+.+.++.|+....+++.+..  ....+.+.+.-+.+.+-+++.+.+    .| . .+..++.+|...|. .++.. 
T Consensus        20 ~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~-~pElAs   98 (698)
T KOG2611|consen   20 LKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR-VPELAS   98 (698)
T ss_pred             hcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC-Chhhcc
Confidence            445566788889988889887642  233566888888888888886543    12 2 34556677777777 45543 


Q ss_pred             -HHHHhCCChHHHHHhhCC-CCH------HHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHH
Q 013228           76 -KVVIDHGAVPIFVKLLAS-PSD------DIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATW  147 (447)
Q Consensus        76 -~~~~~~~~i~~L~~ll~~-~~~------~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~  147 (447)
                       ..++  +-||.|..++.. .++      .+.+.+-.+|..++...+ ....++..|+++.+.+.-.-+.-..-..-++.
T Consensus        99 h~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~-G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~  175 (698)
T KOG2611|consen   99 HEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEA-GLMTLIASGGLRVIAQMYELPDGSHDMALALK  175 (698)
T ss_pred             CHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCc-hhHHHHhcCchHHHHHHHhCCCCchhHHHHHH
Confidence             2333  458889988865 233      367788888988888765 45566788999999976632222222222333


Q ss_pred             HHHHhcCCC--CCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhc
Q 013228          148 TLSNFCAGK--PKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLS  194 (447)
Q Consensus       148 ~L~~l~~~~--~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~  194 (447)
                      ++.-....-  -.........++..+..-+...+.......+..|..+.
T Consensus       176 Vlll~~~~~~cw~e~~~~flali~~va~df~~~~~a~KfElc~lL~~vl  224 (698)
T KOG2611|consen  176 VLLLLVSKLDCWSETIERFLALIAAVARDFAVLHNALKFELCHLLSAVL  224 (698)
T ss_pred             HHHHHHHhcccCcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            333222221  01111112233444444444556666777777777444

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=91.02  E-value=10  Score=33.21  Aligned_cols=212  Identities=19%  Similarity=0.114  Sum_probs=120.4

Q ss_pred             cccccCCCHHHHHHHHHHHHHHHccCCC---Cchhhhh-----------ccCCHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 013228            2 VAGVWSDDNNMQLEATTHIRKLLSNARS---APTEEVI-----------PFGVVPRFVEFLMREDYPQLQFEAAWALKNI   67 (447)
Q Consensus         2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~---~~~~~~~-----------~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l   67 (447)
                      +.+|.+..+..-..|+..+.++...-.-   ...+.+.           -.|+.+.+++-+.++..   .+.++..|..+
T Consensus        13 vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t---~e~tl~lL~~L   89 (262)
T PF14225_consen   13 VACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSST---YELTLRLLSRL   89 (262)
T ss_pred             HHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCCc---HHHHHHHHHHH
Confidence            4578899999999999999999876321   1111111           12334444444544442   45555666666


Q ss_pred             cCC-------ChhhHHHHHhCCChHHHHHhhCCCC----HHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccc
Q 013228           68 VSG-------TSEDTKVVIDHGAVPIFVKLLASPS----DDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKH  136 (447)
Q Consensus        68 ~~~-------~~~~~~~~~~~~~i~~L~~ll~~~~----~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~  136 (447)
                      +..       ..+.|-.+.-.+.+|.++..+++++    ......++..|+.+|....        ...+..++....++
T Consensus        90 ~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~~~La~il~~ya~~  161 (262)
T PF14225_consen   90 TPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------LPNLARILSSYAKG  161 (262)
T ss_pred             hcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------CccHHHHHHHHHhc
Confidence            542       1222333333345677777776655    2444566788888873321        12344444444332


Q ss_pred             c---chhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHH
Q 013228          137 A---KLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRL  213 (447)
Q Consensus       137 ~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L  213 (447)
                      .   ..+....++..+..-..  |.    .....+-.++.+|.++-+-++..++..|..+....+.+..  ...+++..+
T Consensus       162 ~fr~~~dfl~~v~~~l~~~f~--P~----~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlispl  233 (262)
T PF14225_consen  162 RFRDKDDFLSQVVSYLREAFF--PD----HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISPL  233 (262)
T ss_pred             CCCCHHHHHHHHHHHHHHHhC--ch----hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHHH
Confidence            2   22334444433332221  11    2245566788999999999999999999988866554322  445678888


Q ss_pred             HHhcCCCCchhHhHHHHHHHHh
Q 013228          214 VELLGHPSPSVLTRALQTVVNI  235 (447)
Q Consensus       214 ~~lL~~~~~~v~~~a~~~l~~l  235 (447)
                      .+++..+-.   ..|+.++-.+
T Consensus       234 lrlL~t~~~---~eAL~VLd~~  252 (262)
T PF14225_consen  234 LRLLQTDLW---MEALEVLDEI  252 (262)
T ss_pred             HHHhCCccH---HHHHHHHHHH
Confidence            888876544   3444444443

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=90.95  E-value=2.1  Score=33.06  Aligned_cols=72  Identities=14%  Similarity=0.224  Sum_probs=57.8

Q ss_pred             ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcC---CCHHHHHHHHH
Q 013228          337 CIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSH---DNDEIHEKSVK  413 (447)
Q Consensus       337 ~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~---~~~~v~~~a~~  413 (447)
                      ++..|..-+.++++.++..|+..|..++++++..            |...+....++..+..+...   .++.|+.++..
T Consensus        38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~------------f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~  105 (133)
T cd03561          38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKP------------FHLQVADKEFLLELVKIAKNSPKYDPKVREKALE  105 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChH------------HHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence            4667777788899999999999999999987663            56666666777778888654   58899999999


Q ss_pred             HHHHhcC
Q 013228          414 ILETYWC  420 (447)
Q Consensus       414 ~l~~~~~  420 (447)
                      ++..+..
T Consensus       106 ll~~W~~  112 (133)
T cd03561         106 LILAWSE  112 (133)
T ss_pred             HHHHHHH
Confidence            9998754

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=90.79  E-value=2.2  Score=33.15  Aligned_cols=72  Identities=10%  Similarity=-0.032  Sum_probs=59.4

Q ss_pred             ChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccC------CCHHHHHHHHHHHHHHHH
Q 013228          294 LIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC------ADPEIVTVFLKGLEKILK  365 (447)
Q Consensus       294 ~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~~~~~a~~~l~~l~~  365 (447)
                      .+..+..-+.++++.++..|+..|-.+..++.......+...+++..|+.++..      .++.++..++..+..-..
T Consensus        39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (139)
T cd03567          39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL  116 (139)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            466677778899999999999999999998888888888888899999999853      456888888877776654

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=90.75  E-value=4.3  Score=35.82  Aligned_cols=144  Identities=16%  Similarity=0.159  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHcCCChhhHHHHHhCC--ChHHHHHhhCC----CCHHHHHHHHHHHHHhhcCChhHHHHHHhc-C-CH
Q 013228           55 QLQFEAAWALKNIVSGTSEDTKVVIDHG--AVPIFVKLLAS----PSDDIREQAVCALGNVAADSARCRDLVLSE-E-AL  126 (447)
Q Consensus        55 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~L~~ll~~----~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~-~-~l  126 (447)
                      +-+.-++..++-++. ++.....+...+  +...+..++..    ..+..+-.++++++|+...... +..+... + .+
T Consensus        78 ~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~-~~~~~~~~~~~i  155 (268)
T PF08324_consen   78 ESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPG-RQLLLSHFDSSI  155 (268)
T ss_dssp             CC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCC-HHHHHCTHHTCH
T ss_pred             ccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCcc-HHHHHhcccchH
Confidence            446666677766666 455555554443  23444444432    5788889999999999877664 4444432 2 33


Q ss_pred             HHHHHHhcccc---chhHHHHHHHHHHHhcCCC-CCC-ChhhHhhhHHHHHHhh-c-cCChhHHHHHHHHHHHhccCCcH
Q 013228          127 IPLLTQLNKHA---KLSMLRIATWTLSNFCAGK-PKP-IFDQVRPALPALAQLV-H-SNDKEVMTDACRALFYLSEGTND  199 (447)
Q Consensus       127 ~~l~~~l~~~~---~~~~~~~a~~~L~~l~~~~-~~~-~~~~~~~~l~~l~~ll-~-~~~~~v~~~al~~l~~l~~~~~~  199 (447)
                      ...+..+....   +..++..++..+.|++... ... .......++..+...+ . ..+++....++-+++++...++.
T Consensus       156 ~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~  235 (268)
T PF08324_consen  156 LELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDS  235 (268)
T ss_dssp             HHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHH
T ss_pred             HHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChh
Confidence            33444332332   6788888889999987544 111 1222244666677743 3 36899999999999999965544


Q ss_pred             H
Q 013228          200 E  200 (447)
Q Consensus       200 ~  200 (447)
                      .
T Consensus       236 ~  236 (268)
T PF08324_consen  236 A  236 (268)
T ss_dssp             H
T ss_pred             H
Confidence            3

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=90.71  E-value=10  Score=32.68  Aligned_cols=140  Identities=22%  Similarity=0.120  Sum_probs=89.2

Q ss_pred             HHHHHH-hhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHH
Q 013228          168 LPALAQ-LVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCI  246 (447)
Q Consensus       168 l~~l~~-ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~  246 (447)
                      +|.++. +-+..+++.+...+.+|..++.+.. ...    .-+++.+..+...+....+.-+.+.+..+...++...   
T Consensus         2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~-~~~----~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---   73 (234)
T PF12530_consen    2 LPLLLYKLGKISDPELQLPLLEALPSLACHKN-VCV----PPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---   73 (234)
T ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHhccCc-cch----hHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence            344444 5567789999999999999997762 111    1245667777777777766777888888776665332   


Q ss_pred             HhcCChHHHHHh-----h---c-cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH-hcCchhHHHHHHHH
Q 013228          247 INCGALPYLLGL-----L---I-HNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLL-QNAEFDIKNWAARA  316 (447)
Q Consensus       247 ~~~~~l~~l~~~-----l---~-~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l-~~~~~~v~~~a~~a  316 (447)
                         +.+..++..     .   . .....+.....+.++..+|...|+..     ..+++.+..++ +..++..+..+..+
T Consensus        74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g-----~~ll~~ls~~L~~~~~~~~~alale~  145 (234)
T PF12530_consen   74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG-----VDLLPLLSGCLNQSCDEVAQALALEA  145 (234)
T ss_pred             ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH-----HHHHHHHHHHHhccccHHHHHHHHHH
Confidence               122222222     1   1 11133344444567778877666522     22577788888 67788899999999


Q ss_pred             HHHhcCC
Q 013228          317 ISNATFG  323 (447)
Q Consensus       317 L~~l~~~  323 (447)
                      +..++..
T Consensus       146 l~~Lc~~  152 (234)
T PF12530_consen  146 LAPLCEA  152 (234)
T ss_pred             HHHHHHH
Confidence            9999853

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=90.60  E-value=29  Score=37.72  Aligned_cols=72  Identities=8%  Similarity=0.191  Sum_probs=54.1

Q ss_pred             CChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCC
Q 013228          250 GALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFG  323 (447)
Q Consensus       250 ~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~  323 (447)
                      +++|.|..-|.+. +..+|..|...++.+......... =-........+.-+...+.++|..++....++..+
T Consensus       259 ~vip~l~~eL~se-~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~  330 (1266)
T KOG1525|consen  259 AVIPQLEFELLSE-QEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN  330 (1266)
T ss_pred             HHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc
Confidence            7889999999888 999999999999999775333221 00123455566666678899999999999888776

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=90.36  E-value=2.4  Score=33.23  Aligned_cols=72  Identities=7%  Similarity=0.066  Sum_probs=61.6

Q ss_pred             ChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccC-CCHHHHHHHHHHHHHHHH
Q 013228          294 LIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC-ADPEIVTVFLKGLEKILK  365 (447)
Q Consensus       294 ~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~~~~~a~~~l~~l~~  365 (447)
                      .+..|..-+.+.++.++..|+..|-.+..++.......+.+..+++.|..++.. .++.++..++..+.....
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~  110 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD  110 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence            466677778889999999999999999999888888888888999999999988 677888888888777654

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=90.28  E-value=2.2  Score=48.61  Aligned_cols=269  Identities=14%  Similarity=0.135  Sum_probs=146.9

Q ss_pred             ccCCCHHHHHHHHHHHHHHHccCCC--Cchhhhh--ccCCHHHHHHhh-cCCCCHHHHHHHHHHHHHHcCCChhhHHHHH
Q 013228            5 VWSDDNNMQLEATTHIRKLLSNARS--APTEEVI--PFGVVPRFVEFL-MREDYPQLQFEAAWALKNIVSGTSEDTKVVI   79 (447)
Q Consensus         5 l~s~~~~~~~~a~~~l~~l~~~~~~--~~~~~~~--~~~~v~~L~~ll-~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~   79 (447)
                      +..++++.+..++..+..+......  +....-.  ....+..+..+- ..++ +.++......+.      ..+.....
T Consensus       490 ~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~-~~i~~~v~~~l~------~~~~~~la  562 (2341)
T KOG0891|consen  490 LEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTD-PDIRIRVLSSLN------ERFDAQLA  562 (2341)
T ss_pred             HhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCC-cchhhhHHhhhc------cchhhhhc
Confidence            4567788888887777766654211  0000001  112233333332 2344 666655544443      23334455


Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCC
Q 013228           80 DHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKP  159 (447)
Q Consensus        80 ~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~  159 (447)
                      +.+.+..+...+.+....++..+...+++++..+|...-.......+..+-.+- .+.-..+...+..-+..+....+..
T Consensus       563 Q~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~-~sg~~r~~~~~a~~~~~~i~~~~~~  641 (2341)
T KOG0891|consen  563 QPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELE-FSGMARTKEESAKLLCELIISSPVL  641 (2341)
T ss_pred             CchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhh-hcchHHhHHHHHHHhhHHHHHHHHH
Confidence            556667777778888889999999999999987764322211111111111111 1111111111211111111111122


Q ss_pred             ChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-CCchhHhHHHHHHHHhhcC
Q 013228          160 IFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH-PSPSVLTRALQTVVNIAAG  238 (447)
Q Consensus       160 ~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~~~v~~~a~~~l~~l~~~  238 (447)
                      ........+..++..+.+++..+...++.++..|+...........+ ..++.+.+.+.+ .+..-+..+.++++++...
T Consensus       642 i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~  720 (2341)
T KOG0891|consen  642 ISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESS  720 (2341)
T ss_pred             HHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhcc
Confidence            22233455566777778888888999999999999665543333444 455666665544 4566678889999999865


Q ss_pred             ChhhHHHHHh-cCChHHHHHhhccCCchhHHHHHHHHHHHHhcCC
Q 013228          239 DDFQTQCIIN-CGALPYLLGLLIHNHKKSIKTDACWTISNITAGN  282 (447)
Q Consensus       239 ~~~~~~~~~~-~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~  282 (447)
                      .......... ..++..+...+.......++.++...++++....
T Consensus       721 ~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d  765 (2341)
T KOG0891|consen  721 TGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALD  765 (2341)
T ss_pred             cceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccc
Confidence            4322221111 2345666666766656778888888888766543

>KOG1988 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.15  E-value=15  Score=37.30  Aligned_cols=246  Identities=13%  Similarity=0.074  Sum_probs=137.2

Q ss_pred             cccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHH-HhCC
Q 013228            4 GVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVV-IDHG   82 (447)
Q Consensus         4 ~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~-~~~~   82 (447)
                      ++.++....+-++...+.++-... +..  .++.. .+=.|......++ ..+|...+++...--.    ..+.+ ....
T Consensus        32 Glr~~~t~eqpeavvr~~RLFek~-Pfp--ifiNs-~llrLaDaF~~Gn-~llRf~V~rv~~q~g~----hln~v~n~aE  102 (970)
T KOG1988|consen   32 GLRSGKTSEQPEAVVRFPRLFEKY-PFP--IFINS-QLLRLADAFPVGN-NLLRFAVLRVDQQSGK----HLNKVLNGAE  102 (970)
T ss_pred             cccccccccchHHHHHHHHHHhhC-Cch--hhhhH-HHHHHHHHhccCc-HHHHHHHHHHHhhccc----cchhhhhhhh
Confidence            344444555555555555555432 111  22222 2334555666777 6788877777764322    11112 1223


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChh
Q 013228           83 AVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFD  162 (447)
Q Consensus        83 ~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  162 (447)
                      .+..+.....+.|+.-|..++..++.++.--|       +.+..+.++..-..+.++--.+.++.+....+...    ..
T Consensus       103 ~lrri~~V~hsnDp~aRAllL~ilg~~s~lip-------Efn~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~s----k~  171 (970)
T KOG1988|consen  103 FLRRIFYVDHSNDPVARALLLRILGQLSALIP-------EFNQVHHLIRISLDSHHELEVEAAEFAAACFAAQS----KD  171 (970)
T ss_pred             hhheeEEeecCCCHHHHHHHHHHHHHhhhhcc-------cccchhHHHHHHhcCccchhhHHHHHHHhhhhhhh----hh
Confidence            44444555567899999999999999864333       44556666665544444444556666666666443    12


Q ss_pred             hHhhhHHHHHHhhccCC--hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-CCchhHhHHHHHHHHhhcCC
Q 013228          163 QVRPALPALAQLVHSND--KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH-PSPSVLTRALQTVVNIAAGD  239 (447)
Q Consensus       163 ~~~~~l~~l~~ll~~~~--~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~~~v~~~a~~~l~~l~~~~  239 (447)
                      ...++...+-.++...+  +......+.++..+.....      ....+....+.++.. +..+....-+.++++++...
T Consensus       172 FA~si~gkis~mIef~d~~~~mkL~li~Vfs~M~c~at------~A~ra~~l~m~lv~~tps~d~~v~fL~stT~Lasrs  245 (970)
T KOG1988|consen  172 FACSICGKISDMIEFLDLPVPMKLSLIPVFSHMHCHAT------GASRAFGLCMSLVSGTPSIDRVVAFLYSTTNLASRS  245 (970)
T ss_pred             hHHHHHHHHHHHhhcccCCCCcchhHhHHHHHhcchhh------hhHHHHHHHHHHhcCCCcccceeeehhhhHHHHHHH
Confidence            22334444555555443  4445567777777774322      222345566666643 44454555667777776432


Q ss_pred             hhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc
Q 013228          240 DFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA  280 (447)
Q Consensus       240 ~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~  280 (447)
                      -..     -.+-.+.+.+.++.+...-++..+.|.+.+++.
T Consensus       246 ~~a-----i~eq~d~l~q~~ked~~kivr~~vl~kl~~La~  281 (970)
T KOG1988|consen  246 LVA-----ISEQSDVLLQFLKEDERKIVRLKVLRKLDFLAK  281 (970)
T ss_pred             HHH-----hHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh
Confidence            211     124566788888755466677777787777653

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.69  E-value=15  Score=39.34  Aligned_cols=98  Identities=12%  Similarity=0.129  Sum_probs=63.6

Q ss_pred             CCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcc------ccchhHHHHHHHHHHHhcCCC-CCCChhhHh
Q 013228           93 SPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNK------HAKLSMLRIATWTLSNFCAGK-PKPIFDQVR  165 (447)
Q Consensus        93 ~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~------~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~  165 (447)
                      .+..+++...+.++.++....-   +.+.. + -+.+.+++..      .....+.+.+..++.-++.+. +........
T Consensus       853 ~~~~evr~~sl~~l~silet~g---e~ll~-~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~  927 (1610)
T KOG1848|consen  853 SRGVEVRISSLEALVSILETVG---EHLLH-G-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCIL  927 (1610)
T ss_pred             CccceeeHHHHHHHHHHHhccc---hhhcc-c-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHH
Confidence            3566777777788888764432   12222 2 4555555531      113567788888888888877 666666678


Q ss_pred             hhHHHHHHhhc-cCChhHHHHHHHHHHHhcc
Q 013228          166 PALPALAQLVH-SNDKEVMTDACRALFYLSE  195 (447)
Q Consensus       166 ~~l~~l~~ll~-~~~~~v~~~al~~l~~l~~  195 (447)
                      +++..+..+-+ ..|..+--.|+..+++++.
T Consensus       928 ~lidtl~~fs~QktdlNISltAi~lfWtvsD  958 (1610)
T KOG1848|consen  928 DLIDTLLVFSRQKTDLNISLTAIGLFWTVSD  958 (1610)
T ss_pred             HHHHHHHHHHhhhccccccHHHHHHHHHHHH
Confidence            88888887765 4577777777777777763

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=89.65  E-value=7.5  Score=39.22  Aligned_cols=162  Identities=15%  Similarity=0.148  Sum_probs=90.3

Q ss_pred             ChHHHHHhhCC----CCHHHHHHHHHHHHHhhcCChhH---------HHHHHhcCCHHHHHHHhc---cccchhHHHHHH
Q 013228           83 AVPIFVKLLAS----PSDDIREQAVCALGNVAADSARC---------RDLVLSEEALIPLLTQLN---KHAKLSMLRIAT  146 (447)
Q Consensus        83 ~i~~L~~ll~~----~~~~i~~~a~~~L~~l~~~~~~~---------~~~~~~~~~l~~l~~~l~---~~~~~~~~~~a~  146 (447)
                      .+..+..++..    .++.++..|+.+++.+.......         .........++.+...+.   ...+..-+..++
T Consensus       432 ~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~L  511 (618)
T PF01347_consen  432 LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYL  511 (618)
T ss_dssp             HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHH
Confidence            34555556654    45778888888888776311100         011112234666666664   234556777788


Q ss_pred             HHHHHhcCCCCCCChhhHhhhHHHHHHhhccC---ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC--CC
Q 013228          147 WTLSNFCAGKPKPIFDQVRPALPALAQLVHSN---DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH--PS  221 (447)
Q Consensus       147 ~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~---~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~--~~  221 (447)
                      .+|.|+-.          ...++.+...+...   ...+|..|++++..+....+...        .+.++++..+  .+
T Consensus       512 kaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~  573 (618)
T PF01347_consen  512 KALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTED  573 (618)
T ss_dssp             HHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-
T ss_pred             HHhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCC
Confidence            88988853          34677777777665   67889999999998876555433        3566666644  45


Q ss_pred             chhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHH
Q 013228          222 PSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDAC  272 (447)
Q Consensus       222 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~  272 (447)
                      .++|..|+..|-.   .+|..       ..+..+...+....+..|.....
T Consensus       574 ~EvRiaA~~~lm~---~~P~~-------~~l~~i~~~l~~E~~~QV~sfv~  614 (618)
T PF01347_consen  574 PEVRIAAYLILMR---CNPSP-------SVLQRIAQSLWNEPSNQVASFVY  614 (618)
T ss_dssp             HHHHHHHHHHHHH---T---H-------HHHHHHHHHHTT-S-HHHHHHHH
T ss_pred             hhHHHHHHHHHHh---cCCCH-------HHHHHHHHHHhhCchHHHHHHHH
Confidence            6788877765543   22222       13345666666554566655443

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=89.45  E-value=18  Score=33.70  Aligned_cols=186  Identities=11%  Similarity=0.067  Sum_probs=93.7

Q ss_pred             cCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhc--CCh-hhHH---HHHhc-
Q 013228          177 SNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAA--GDD-FQTQ---CIINC-  249 (447)
Q Consensus       177 ~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~--~~~-~~~~---~~~~~-  249 (447)
                      -+...+....+.++.++....+.....- -...++.++..+-+....++..|..++..+..  +.+ ...+   ...+. 
T Consensus       145 ~~s~si~~erL~i~~~ll~q~p~~M~~~-~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~  223 (372)
T PF12231_consen  145 FPSKSIISERLNIYKRLLSQFPQQMIKH-ADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRS  223 (372)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccc
Confidence            3456777888888888886655432211 11367777777777777777776555544432  111 1111   11221 


Q ss_pred             ---C-----ChHHHHHhhccCCchhHHHHHHHHHHHHhcCCH-HHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHh
Q 013228          250 ---G-----ALPYLLGLLIHNHKKSIKTDACWTISNITAGNS-EHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNA  320 (447)
Q Consensus       250 ---~-----~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l  320 (447)
                         +     +.+.+..++.+.++.......-.++.-+..... +.. ..+ ...+...-...+++++.+|..|..+...+
T Consensus       224 ~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w-~~~-n~wL~v~e~cFn~~d~~~k~~A~~aW~~l  301 (372)
T PF12231_consen  224 LENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSW-EHL-NEWLKVPEKCFNSSDPQVKIQAFKAWRRL  301 (372)
T ss_pred             cccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhcc-HhH-hHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence               2     233366666663132222222222223322211 111 111 11444444456688999999999988877


Q ss_pred             cCCCC--HHHHHHHHHcCChHHHHhhccCC-CH----HHHHHHHHHHHHHHHh
Q 013228          321 TFGGT--HEQIKYLVREGCIKPLCDLLLCA-DP----EIVTVFLKGLEKILKV  366 (447)
Q Consensus       321 ~~~~~--~~~~~~l~~~~~l~~L~~ll~~~-~~----~~~~~a~~~l~~l~~~  366 (447)
                      .....  .......... ...++...++.. ..    ++...++..+.+++-.
T Consensus       302 iy~~~~~~~~~~k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly~  353 (372)
T PF12231_consen  302 IYASNPNELTSPKRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLYY  353 (372)
T ss_pred             HHHhcCCccccHHHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHHH
Confidence            65221  1111111111 234444444432 22    6778888888888743

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=89.12  E-value=19  Score=33.47  Aligned_cols=133  Identities=11%  Similarity=0.092  Sum_probs=75.2

Q ss_pred             chhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh---cCchhHHHHHHHHHHHhcCCCCHH-----------HH
Q 013228          264 KKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQ---NAEFDIKNWAARAISNATFGGTHE-----------QI  329 (447)
Q Consensus       264 ~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~---~~~~~v~~~a~~aL~~l~~~~~~~-----------~~  329 (447)
                      ...-|..|+..+..++...++....++.. .+..++.-..   +.++.-+..|+..++.++..+...           ..
T Consensus       224 ~~TrR~AA~dfl~~L~~~~~~~v~~i~~~-~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v  302 (370)
T PF08506_consen  224 SDTRRRAACDFLRSLCKKFEKQVTSILMQ-YIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDV  302 (370)
T ss_dssp             --SHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-H
T ss_pred             cCCcHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccH
Confidence            34556778888888876433333222221 2333322211   346778889999999998865210           23


Q ss_pred             HHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHH
Q 013228          330 KYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHE  409 (447)
Q Consensus       330 ~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~  409 (447)
                      ..+....+++.|. --.+..|-++..|++.+..+-..-+               ...+  .+.++.+.+.+.+++.-|+.
T Consensus       303 ~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~---------------~~~l--~~~~~~l~~~L~~~~~vv~t  364 (370)
T PF08506_consen  303 VDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP---------------KEQL--LQIFPLLVNHLQSSSYVVHT  364 (370)
T ss_dssp             HHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS----------------HHHH--HHHHHHHHHHTTSS-HHHHH
T ss_pred             HHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC---------------HHHH--HHHHHHHHHHhCCCCcchhh
Confidence            4445555666555 2223456677778777776644321               1222  34678888999999999999


Q ss_pred             HHHHHH
Q 013228          410 KSVKIL  415 (447)
Q Consensus       410 ~a~~~l  415 (447)
                      +|+..+
T Consensus       365 yAA~~i  370 (370)
T PF08506_consen  365 YAAIAI  370 (370)
T ss_dssp             HHHHHH
T ss_pred             hhhhhC
Confidence            888654

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=89.09  E-value=4.6  Score=29.08  Aligned_cols=69  Identities=19%  Similarity=0.218  Sum_probs=54.4

Q ss_pred             cCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHH
Q 013228          335 EGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKI  414 (447)
Q Consensus       335 ~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~  414 (447)
                      ...+..|++-...++......++..+..+++....              ...+...|+.+.|.++...-+++.+.....+
T Consensus        29 ~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a--------------~~~l~~iG~~~fL~klr~~~~~~~~~~id~i   94 (98)
T PF14726_consen   29 RLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYA--------------AQILRDIGAVRFLSKLRPNVEPNLQAEIDEI   94 (98)
T ss_pred             HHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHH--------------HHHHHHccHHHHHHHHHhcCCHHHHHHHHHH
Confidence            34566677777777777788899999998875443              6778889999999999988889988888877


Q ss_pred             HHH
Q 013228          415 LET  417 (447)
Q Consensus       415 l~~  417 (447)
                      ++.
T Consensus        95 l~~   97 (98)
T PF14726_consen   95 LDQ   97 (98)
T ss_pred             Hhc
Confidence            764

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=88.96  E-value=4.5  Score=29.14  Aligned_cols=92  Identities=14%  Similarity=0.188  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHHHccCCCCchhhhh-ccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHH
Q 013228           11 NMQLEATTHIRKLLSNARSAPTEEVI-PFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVK   89 (447)
Q Consensus        11 ~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~   89 (447)
                      ++|..|+..+..-..+. --....+. ....+..|+...+.+. ...+..++..+..++. ++.....+.+.|+...|-+
T Consensus         2 EIR~RAL~~I~~Kl~~~-Li~~~dl~~~~~Ll~~LleWFnf~~-~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~k   78 (98)
T PF14726_consen    2 EIRVRALESIEFKLEHG-LISEEDLVKERLLLKQLLEWFNFPP-VPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSK   78 (98)
T ss_pred             hHHHHHHHHHHHHHHhc-cccHHHHccHHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHH
Confidence            56777777666544432 22223333 4567888888888888 6789999999999998 7788888889999988776


Q ss_pred             hhCCCCHHHHHHHHHH
Q 013228           90 LLASPSDDIREQAVCA  105 (447)
Q Consensus        90 ll~~~~~~i~~~a~~~  105 (447)
                      +=...++..+..+-..
T Consensus        79 lr~~~~~~~~~~id~i   94 (98)
T PF14726_consen   79 LRPNVEPNLQAEIDEI   94 (98)
T ss_pred             HHhcCCHHHHHHHHHH
Confidence            6655566666544433

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=88.73  E-value=4.5  Score=37.17  Aligned_cols=218  Identities=18%  Similarity=0.114  Sum_probs=111.1

Q ss_pred             hccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChh
Q 013228           36 IPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSAR  115 (447)
Q Consensus        36 ~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~  115 (447)
                      +...++..+..++..+.++.....++.++..-...-    ..-+...+++.+.+-+.+..+.+|+.-+..++........
T Consensus        19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~   94 (339)
T PF12074_consen   19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPN   94 (339)
T ss_pred             hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccC
Confidence            334477788888877665777777777777655311    0111224556677777777777999888888887641110


Q ss_pred             HHHHHHhcCCHHHHHHHhcc---ccchhHH---HHHHHHHHHhcCCC-CCCCh-hhHh-----hhHHH-HH--Hhhcc-C
Q 013228          116 CRDLVLSEEALIPLLTQLNK---HAKLSML---RIATWTLSNFCAGK-PKPIF-DQVR-----PALPA-LA--QLVHS-N  178 (447)
Q Consensus       116 ~~~~~~~~~~l~~l~~~l~~---~~~~~~~---~~a~~~L~~l~~~~-~~~~~-~~~~-----~~l~~-l~--~ll~~-~  178 (447)
                      ....-.-..+++.+++.+..   ++-....   ..++.++..+.... ..... ....     +-=|. +.  ++... .
T Consensus        95 ~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~  174 (339)
T PF12074_consen   95 SDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLA  174 (339)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccC
Confidence            00111122356667766632   1111111   11222222211111 00000 0000     00000 00  22223 4


Q ss_pred             ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC--CchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHH
Q 013228          179 DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHP--SPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLL  256 (447)
Q Consensus       179 ~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~--~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~  256 (447)
                      +++.....++++..+..........-.....-..++.++-+.  .+.+|+.|+..+..+...++..    +...++..+-
T Consensus       175 ~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~l~  250 (339)
T PF12074_consen  175 SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISGLW  250 (339)
T ss_pred             CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHHH
Confidence            555566667777666644332211111234567788888777  8999999999999998877753    2223444555


Q ss_pred             Hhhcc
Q 013228          257 GLLIH  261 (447)
Q Consensus       257 ~~l~~  261 (447)
                      ..+..
T Consensus       251 ~~l~~  255 (339)
T PF12074_consen  251 KWLSS  255 (339)
T ss_pred             HHHHh
Confidence            55543

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=88.59  E-value=18  Score=34.43  Aligned_cols=275  Identities=11%  Similarity=0.136  Sum_probs=123.0

Q ss_pred             CCHHHHHHhhcC---CCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhc---
Q 013228           39 GVVPRFVEFLMR---EDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASP-SDDIREQAVCALGNVAA---  111 (447)
Q Consensus        39 ~~v~~L~~ll~~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~i~~~a~~~L~~l~~---  111 (447)
                      .++..|..++..   ..++-+-....+++.-+-..-......+++. .+..+....+++ +|..-.....+++.+.+   
T Consensus        26 ~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~  104 (435)
T PF03378_consen   26 QLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVC  104 (435)
T ss_dssp             HHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhcc
Confidence            345566666654   2335566666666655544333333333332 334444444553 56666666666665543   


Q ss_pred             -CChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCC-CCChhhHhhhHHHHHHh-hccCChhHHHHHHH
Q 013228          112 -DSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKP-KPIFDQVRPALPALAQL-VHSNDKEVMTDACR  188 (447)
Q Consensus       112 -~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~l~~l~~l-l~~~~~~v~~~al~  188 (447)
                       .++..- .-.+...+|.+...| ...-.+..-++...++.+....+ .........++|.++.- +-.....+ -...+
T Consensus       105 ~~~~~~v-~~~E~~L~P~f~~IL-q~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-Palvr  181 (435)
T PF03378_consen  105 EADPEAV-SQFEEALFPPFQEIL-QQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI-PALVR  181 (435)
T ss_dssp             GGGHH----HHHHHHHHHHHHHH-HTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH-HHHHH
T ss_pred             CCChhHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc-CcHHH
Confidence             222211 122344567777777 44445677777777777776553 22222334444444422 22111111 22333


Q ss_pred             HHHHhccCCcHHHHHHHHh----CcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhh-HHHHHhcCChHHHHHhhccCC
Q 013228          189 ALFYLSEGTNDEIQAVIEA----GVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQ-TQCIINCGALPYLLGLLIHNH  263 (447)
Q Consensus       189 ~l~~l~~~~~~~~~~~~~~----~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~l~~~l~~~~  263 (447)
                      .|.......+..   +...    +++..+-+++.++..+  ..+...|..+...-+.. .+..+. .++..+..-|.+..
T Consensus       182 LL~a~i~k~~~~---i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~-~I~~lll~RLq~sk  255 (435)
T PF03378_consen  182 LLQAYIKKDPSF---IVANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLK-QIFTLLLTRLQSSK  255 (435)
T ss_dssp             HHHHHHHHHGGG-------S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHH-HHHHHHHHHHHHC-
T ss_pred             HHHHHHHhCchh---hcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHhhCC
Confidence            333333222221   1111    2334444556554332  44666777666544421 111111 24444555555443


Q ss_pred             chhHHHHHHHHHHHHhc-CCHHHHHHHHH---cCChHHHHHHH-----hc-CchhHHHHHHHHHHHhcCC
Q 013228          264 KKSIKTDACWTISNITA-GNSEHIQAVID---AGLIGPLVNLL-----QN-AEFDIKNWAARAISNATFG  323 (447)
Q Consensus       264 ~~~v~~~a~~~l~nl~~-~~~~~~~~l~~---~~~~~~L~~~l-----~~-~~~~v~~~a~~aL~~l~~~  323 (447)
                      ..+..+..+..++.++. .+++..-..++   .|+...++.-+     .. ..+.-|+.++-++.++...
T Consensus       256 T~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~e  325 (435)
T PF03378_consen  256 TEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCE  325 (435)
T ss_dssp             -HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHS
T ss_pred             cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhc
Confidence            55666655555565544 34554444443   45555444421     11 2334466677777776643

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=88.55  E-value=2.9  Score=33.68  Aligned_cols=111  Identities=25%  Similarity=0.214  Sum_probs=72.7

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhc--CCHHHHHHHhccccchhHHHHHHHHHHHhcCCC---C
Q 013228           83 AVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSE--EALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK---P  157 (447)
Q Consensus        83 ~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~--~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~---~  157 (447)
                      .+..+..+++++++.-|-.++..+...+..++  .+.+.+.  ..+..++..|.+..+..+.+.++.++..+....   +
T Consensus        26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p  103 (165)
T PF08167_consen   26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP  103 (165)
T ss_pred             HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            45668888999889999888888888886642  2333222  247788888877777788888998888887544   3


Q ss_pred             CCChhhH----hhhHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 013228          158 KPIFDQV----RPALPALAQLVHSNDKEVMTDACRALFYLSEGT  197 (447)
Q Consensus       158 ~~~~~~~----~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~  197 (447)
                      ....+..    ..+++.++.+++.  ......++.++..+....
T Consensus       104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~  145 (165)
T PF08167_consen  104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHH  145 (165)
T ss_pred             chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHC
Confidence            3222222    3444445555543  456666777777666433

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=88.44  E-value=29  Score=34.69  Aligned_cols=137  Identities=15%  Similarity=0.105  Sum_probs=80.1

Q ss_pred             hhhHHHHHHhhccC----ChhHHHHHHHHHHHhccC---CcHHHHHHHHhCcHHHHHHhc----CCCCchhHhHHHHHHH
Q 013228          165 RPALPALAQLVHSN----DKEVMTDACRALFYLSEG---TNDEIQAVIEAGVCPRLVELL----GHPSPSVLTRALQTVV  233 (447)
Q Consensus       165 ~~~l~~l~~ll~~~----~~~v~~~al~~l~~l~~~---~~~~~~~~~~~~~~~~L~~lL----~~~~~~v~~~a~~~l~  233 (447)
                      ...+..+..++.++    .+.++..++-+++++...   ........+...+++.+...|    ...+...+...+.+|+
T Consensus       392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG  471 (574)
T smart00638      392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG  471 (574)
T ss_pred             HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence            44566677777643    456777777777766631   111000111123445555544    3455666777899999


Q ss_pred             HhhcCChhhHHHHHhcCChHHHHHhhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh--cCchhH
Q 013228          234 NIAAGDDFQTQCIINCGALPYLLGLLI--HNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQ--NAEFDI  309 (447)
Q Consensus       234 ~l~~~~~~~~~~~~~~~~l~~l~~~l~--~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~--~~~~~v  309 (447)
                      |+....           .++.+..++.  ...+..+|..|+|+|..++...+..        +-+.++.++.  ..++++
T Consensus       472 N~g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~Ev  532 (574)
T smart00638      472 NAGHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEV  532 (574)
T ss_pred             ccCChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHH
Confidence            877522           2233444443  2225789999999999987644442        3444556555  357889


Q ss_pred             HHHHHHHHHHh
Q 013228          310 KNWAARAISNA  320 (447)
Q Consensus       310 ~~~a~~aL~~l  320 (447)
                      |..|..+|...
T Consensus       533 RiaA~~~lm~t  543 (574)
T smart00638      533 RMAAVLVLMET  543 (574)
T ss_pred             HHHHHHHHHhc
Confidence            98888877554

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=88.24  E-value=4.3  Score=31.71  Aligned_cols=73  Identities=11%  Similarity=0.080  Sum_probs=60.7

Q ss_pred             ChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccC-CCHHHHHHHHHHHHHHHHh
Q 013228          294 LIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC-ADPEIVTVFLKGLEKILKV  366 (447)
Q Consensus       294 ~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~~~~~a~~~l~~l~~~  366 (447)
                      .+..|..-+.++++.++..|+..|-.+..++.......+.+.++++.|..++.. .++.++..++..+..-...
T Consensus        42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~  115 (142)
T cd03569          42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA  115 (142)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence            566677778889999999999999999998877777778888999999998874 5678888888888777654

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=87.84  E-value=26  Score=33.44  Aligned_cols=263  Identities=11%  Similarity=0.057  Sum_probs=122.8

Q ss_pred             CCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCC----CCCCChhhHhhhHH
Q 013228           94 PSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAG----KPKPIFDQVRPALP  169 (447)
Q Consensus        94 ~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~----~~~~~~~~~~~~l~  169 (447)
                      +++.+-+...+++..+...-.+....+... .+..+....++.+++..-.+...+++.+.+.    .+.........++|
T Consensus        42 ENeylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P  120 (435)
T PF03378_consen   42 ENEYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFP  120 (435)
T ss_dssp             C-HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHH
T ss_pred             cchHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence            456666677777766655444343333221 2222222333444555555555555544433    23333345678889


Q ss_pred             HHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCc---hhHhHHHHHHHHhhcCChhhHHHH
Q 013228          170 ALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSP---SVLTRALQTVVNIAAGDDFQTQCI  246 (447)
Q Consensus       170 ~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~---~v~~~a~~~l~~l~~~~~~~~~~~  246 (447)
                      .+...|+.+-.+..-++...++.+.+....  ..+ .......+-.++...-|   .-.....+.|..+....+..   +
T Consensus       121 ~f~~ILq~dV~EF~PYvfQIla~Lle~~~~--~~~-p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~---i  194 (435)
T PF03378_consen  121 PFQEILQQDVQEFIPYVFQILAQLLELRPS--SPL-PDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSF---I  194 (435)
T ss_dssp             HHHHHHHTT-TTTHHHHHHHHHHHHHHSS----S---TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CCC-cHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchh---h
Confidence            999999988888888888888887754431  111 11112222222222111   22244455666655444432   2


Q ss_pred             HhcCC----hHHHHHhhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHh-cCchhHHHHHHHHHHHh
Q 013228          247 INCGA----LPYLLGLLIHNHKKSIKTDACWTISNITAG-NSEHIQAVIDAGLIGPLVNLLQ-NAEFDIKNWAARAISNA  320 (447)
Q Consensus       247 ~~~~~----l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~~~~L~~~l~-~~~~~v~~~a~~aL~~l  320 (447)
                      ...+-    +..+-+++.+. ..  -..+...|..+... ..+..+..+.. ++..++.-|+ +...+..+..+..++.+
T Consensus       195 ~~~~~l~~iLgvFQkLi~sk-~~--D~~gF~LL~~iv~~~p~~~l~~yl~~-I~~lll~RLq~skT~kf~~~fv~F~~~~  270 (435)
T PF03378_consen  195 VANNQLEPILGVFQKLIASK-AN--DHYGFDLLESIVENLPPEALEPYLKQ-IFTLLLTRLQSSKTEKFVKRFVVFLSLF  270 (435)
T ss_dssp             ---S-CHHHHHHHHHHHT-T-TC--HHHHHHHHHHHHHHS-HHHHGGGHHH-HHHHHHHHHHHC--HHHHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHCCC-Cc--chHHHHHHHHHHHHCCHHHHHHHHHH-HHHHHHHHHhhCCcHHHHHHHHHHHHHH
Confidence            22233    33444556555 22  24466666666553 33333333333 5555555566 44666666666666666


Q ss_pred             cCCCCHHHHHHHHH---cCChHHHHhhc-----cC-CCHHHHHHHHHHHHHHHHhh
Q 013228          321 TFGGTHEQIKYLVR---EGCIKPLCDLL-----LC-ADPEIVTVFLKGLEKILKVG  367 (447)
Q Consensus       321 ~~~~~~~~~~~l~~---~~~l~~L~~ll-----~~-~~~~~~~~a~~~l~~l~~~~  367 (447)
                      +...+++.....++   .|....+..-+     .. ..+.-++.+.-++.+++..+
T Consensus       271 ~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es  326 (435)
T PF03378_consen  271 AIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCES  326 (435)
T ss_dssp             HHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSS
T ss_pred             HHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhcc
Confidence            65445554444443   34444433311     11 23333555666666666443

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=87.79  E-value=7.9  Score=29.85  Aligned_cols=74  Identities=7%  Similarity=-0.060  Sum_probs=60.6

Q ss_pred             ChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccC---CCHHHHHHHHHHHHHHHHhh
Q 013228          294 LIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC---ADPEIVTVFLKGLEKILKVG  367 (447)
Q Consensus       294 ~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~---~~~~~~~~a~~~l~~l~~~~  367 (447)
                      .+..|..-++++++.++..|+..|-.+..++.+.....+....++..|+.++..   .++.++..++..+.......
T Consensus        38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f  114 (133)
T cd03561          38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF  114 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            466677778889999999999999999999888777777777788889998875   46789988888888776543

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=87.76  E-value=4.1  Score=31.46  Aligned_cols=72  Identities=14%  Similarity=0.187  Sum_probs=57.4

Q ss_pred             ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCC--HHHHHHHHHH
Q 013228          337 CIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDN--DEIHEKSVKI  414 (447)
Q Consensus       337 ~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~--~~v~~~a~~~  414 (447)
                      ++..|..-+.++++.++..|+..|..+++++...            |...+...++++.|..+...+.  +.|++++..+
T Consensus        38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~------------f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~l  105 (133)
T smart00288       38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSK------------FHLEVASKEFLNELVKLIKPKYPLPLVKKRILEL  105 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH------------HHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            4666777778899999999999999999987653            5677777888899988866543  3399999999


Q ss_pred             HHHhcC
Q 013228          415 LETYWC  420 (447)
Q Consensus       415 l~~~~~  420 (447)
                      +..+..
T Consensus       106 i~~W~~  111 (133)
T smart00288      106 IQEWAD  111 (133)
T ss_pred             HHHHHH
Confidence            988765

Unpublished observations. Domain of unknown function.

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=87.33  E-value=19  Score=35.10  Aligned_cols=222  Identities=15%  Similarity=0.053  Sum_probs=117.6

Q ss_pred             cCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcC--C---------CCchhHhHHHHHHHHhhcCChhhHHH
Q 013228          177 SNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLG--H---------PSPSVLTRALQTVVNIAAGDDFQTQC  245 (447)
Q Consensus       177 ~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~--~---------~~~~v~~~a~~~l~~l~~~~~~~~~~  245 (447)
                      +++.+|...+-..|..+...-++       ..++..|..+..  .         -++.+|...+..|   ++...   ..
T Consensus       248 d~~~~V~~~ae~~LKr~~~~~ed-------~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L---~kS~~---Aa  314 (501)
T PF13001_consen  248 DSNSSVSDRAEDLLKRLSVSLED-------PDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLL---SKSVI---AA  314 (501)
T ss_pred             CCcchHHHHHHHHHhhcCCCCCC-------HHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHH---HHhHH---HH
Confidence            44566666676677666643221       123444444433  1         2234444444443   33111   00


Q ss_pred             HHhcCChHHHHHhhccC-CchhHHHHHHHHH---HHHhcC-CHHHHH---HHHHcCChHHHHH----HHhcCchhHHHHH
Q 013228          246 IINCGALPYLLGLLIHN-HKKSIKTDACWTI---SNITAG-NSEHIQ---AVIDAGLIGPLVN----LLQNAEFDIKNWA  313 (447)
Q Consensus       246 ~~~~~~l~~l~~~l~~~-~~~~v~~~a~~~l---~nl~~~-~~~~~~---~l~~~~~~~~L~~----~l~~~~~~v~~~a  313 (447)
                      -.-...+..+...+.+. ...+++..+...+   ...... .+....   ..+..++.|.+-.    --...+...|..+
T Consensus       315 ~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~a  394 (501)
T PF13001_consen  315 TSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLA  394 (501)
T ss_pred             hCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHH
Confidence            11123333444444333 1346666665555   444442 333332   3344555555410    0123467899999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchH
Q 013228          314 ARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGL  393 (447)
Q Consensus       314 ~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  393 (447)
                      ..+|+.++.....-..   -+.+.+..|.+-|..++++++...-++|..+..........           ........+
T Consensus       395 Ye~lG~L~~~~p~l~~---~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~-----------~~~~~~~~~  460 (501)
T PF13001_consen  395 YETLGLLAKRAPSLFS---KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDD-----------EDEQKRLLL  460 (501)
T ss_pred             HHHHHHHHccCccccc---ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccc-----------hhHHHHHHH
Confidence            9999999987432111   22356888888888888999999999998888654332110           000001111


Q ss_pred             H-HHHHHhcCCCHHHHHHHHHHHHHhcCCCCCC
Q 013228          394 E-KIENLRSHDNDEIHEKSVKILETYWCGRVAG  425 (447)
Q Consensus       394 ~-~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~  425 (447)
                      . .+.....+....++..|.+-.+++|+.++.+
T Consensus       461 ~~l~~~~~~~~~~~~R~~avk~an~~fpf~d~~  493 (501)
T PF13001_consen  461 ELLLLSYIQSEVRSCRYAAVKYANACFPFSDVP  493 (501)
T ss_pred             HHHHHhhccchhHHHHHHHHHHHHHhCCccchH
Confidence            1 2222334555668888999999999877654

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=87.31  E-value=24  Score=32.58  Aligned_cols=103  Identities=14%  Similarity=0.033  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhcCChhHHH-HHHhcCCHH
Q 013228           54 PQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLAS-----PSDDIREQAVCALGNVAADSARCRD-LVLSEEALI  127 (447)
Q Consensus        54 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-----~~~~i~~~a~~~L~~l~~~~~~~~~-~~~~~~~l~  127 (447)
                      ..+..++..||+|+..+++..+....+......+++.+..     ....+...=++.|.-+..-.+..|. .+.+.++++
T Consensus       111 ~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~  190 (532)
T KOG4464|consen  111 MHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLE  190 (532)
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccH
Confidence            4788999999999999999999999999888888876643     1223333334444444433334444 455677888


Q ss_pred             HHHHHhcc-----c---------cchhHHHHHHHHHHHhcCCC
Q 013228          128 PLLTQLNK-----H---------AKLSMLRIATWTLSNFCAGK  156 (447)
Q Consensus       128 ~l~~~l~~-----~---------~~~~~~~~a~~~L~~l~~~~  156 (447)
                      .+.+.+..     +         .+.+....++.++.|++.+.
T Consensus       191 ~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~  233 (532)
T KOG4464|consen  191 LLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDS  233 (532)
T ss_pred             HHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence            88777741     1         11234445777888888776

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=87.28  E-value=2  Score=36.33  Aligned_cols=79  Identities=20%  Similarity=0.251  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHcCCChhhHHHHHhCCC-------hHHHHHhhCC-CCHHHHHHHHHHHHHhhcCChhH-HHHHHhcCC
Q 013228           55 QLQFEAAWALKNIVSGTSEDTKVVIDHGA-------VPIFVKLLAS-PSDDIREQAVCALGNVAADSARC-RDLVLSEEA  125 (447)
Q Consensus        55 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~-------i~~L~~ll~~-~~~~i~~~a~~~L~~l~~~~~~~-~~~~~~~~~  125 (447)
                      .=|..|+++|++++- .+.+.+.+...+-       +..|.+++.. .++..|+.++-.|.+|+..+... +..-.+.+.
T Consensus       139 SPqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~  217 (257)
T PF12031_consen  139 SPQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC  217 (257)
T ss_pred             CHHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence            458999999999998 5566666655443       3445555544 68999999999999999766554 455557788


Q ss_pred             HHHHHHHhc
Q 013228          126 LIPLLTQLN  134 (447)
Q Consensus       126 l~~l~~~l~  134 (447)
                      +..|+.++.
T Consensus       218 i~~Li~FiE  226 (257)
T PF12031_consen  218 ISHLIAFIE  226 (257)
T ss_pred             HHHHHHHHH
Confidence            999999983

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.24  E-value=56  Score=36.78  Aligned_cols=231  Identities=16%  Similarity=0.071  Sum_probs=116.8

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCChhHHH
Q 013228           40 VVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLAS-PSDDIREQAVCALGNVAADSARCRD  118 (447)
Q Consensus        40 ~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~i~~~a~~~L~~l~~~~~~~~~  118 (447)
                      ....++..+..++ +..+..+..+++.++..-++  ..++ ++....++.-+.+ .++..|..-..+++.+-........
T Consensus       877 ~~~l~~~sl~~~~-p~~rc~~~ea~arLaq~v~~--~~f~-a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s  952 (2067)
T KOG1822|consen  877 ALTLIVNSLINPN-PKLRCAAAEALARLAQVVGS--APFV-ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGS  952 (2067)
T ss_pred             HHHHHhhhhccCC-hHHHHHHHHHHHHHHHhccc--cchH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCC
Confidence            3444555566667 77888788888877762111  1111 1223444444444 5566665555555555422211100


Q ss_pred             HHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCC---hhHHHHHHH-------
Q 013228          119 LVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSND---KEVMTDACR-------  188 (447)
Q Consensus       119 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~---~~v~~~al~-------  188 (447)
                      .-.....+..+..+...+.++.++..++.++..+...............+..+..++.+..   .++...--+       
T Consensus       953 ~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~ 1032 (2067)
T KOG1822|consen  953 GQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDD 1032 (2067)
T ss_pred             chhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchh
Confidence            0001123555666664555668999999999988876633334444555555666654322   222211111       


Q ss_pred             ------HHHHhccCCcH--HHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhc
Q 013228          189 ------ALFYLSEGTND--EIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLI  260 (447)
Q Consensus       189 ------~l~~l~~~~~~--~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~  260 (447)
                            +++.=...+..  .. ..+....+....-++.++++.++..+..++.++--..+....   -.-++..+..++.
T Consensus      1033 ~~alittlgpeL~~N~~~d~t-~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~l~ 1108 (2067)
T KOG1822|consen 1033 EDALITTLGPELGPNGDKDST-STLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSLLS 1108 (2067)
T ss_pred             HHHHHHhcccccCCCCcccch-hHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHHhc
Confidence                  11111111111  11 122222333344445667888999999999988765553211   1124556666666


Q ss_pred             cCCchhHHHHHHHHHHHHh
Q 013228          261 HNHKKSIKTDACWTISNIT  279 (447)
Q Consensus       261 ~~~~~~v~~~a~~~l~nl~  279 (447)
                      ++ ..-+|.....++..+.
T Consensus      1109 s~-~~i~r~~~~~clrql~ 1126 (2067)
T KOG1822|consen 1109 SS-YLILRRASFSCLRQLV 1126 (2067)
T ss_pred             ch-hhhhhhhHHhhhhHHh
Confidence            65 4445555555554444

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=86.92  E-value=11  Score=28.38  Aligned_cols=86  Identities=16%  Similarity=0.144  Sum_probs=57.4

Q ss_pred             HHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHc-CChHHHHhhccCCC----
Q 013228          275 ISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVRE-GCIKPLCDLLLCAD----  349 (447)
Q Consensus       275 l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~-~~l~~L~~ll~~~~----  349 (447)
                      |.+++..++.....     ++..|.+-|+..++.|+..++..|..++..+.+.....+... ..+..+.+.-...|    
T Consensus        25 ia~~t~~s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~G   99 (122)
T cd03572          25 IAKLTRKSVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKG   99 (122)
T ss_pred             HHHHHHcCHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccC
Confidence            44444444443333     455688888888899999999999999999888777766543 34555555444222    


Q ss_pred             ----HHHHHHHHHHHHHHHH
Q 013228          350 ----PEIVTVFLKGLEKILK  365 (447)
Q Consensus       350 ----~~~~~~a~~~l~~l~~  365 (447)
                          ..++..|-+++.-++.
T Consensus       100 d~~~~~VR~~A~El~~~if~  119 (122)
T cd03572         100 DSLNEKVREEAQELIKAIFS  119 (122)
T ss_pred             cchhHHHHHHHHHHHHHHhc
Confidence                2577777777776654

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=86.40  E-value=17  Score=29.97  Aligned_cols=71  Identities=20%  Similarity=0.289  Sum_probs=55.4

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhH
Q 013228           40 VVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARC  116 (447)
Q Consensus        40 ~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~  116 (447)
                      .++.++++.-+++ ..++..|+..+..+....--+.     ...+|.++.+..++++.++..|...+..+....+..
T Consensus         9 yl~~Il~~~~~~~-~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~   79 (187)
T PF12830_consen    9 YLKNILELCLSSD-DSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESL   79 (187)
T ss_pred             HHHHHHHHHhCCC-HHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHH
Confidence            4667778778888 8999999999988876321111     136799999999999999999999999998655443

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=86.16  E-value=10  Score=33.76  Aligned_cols=72  Identities=13%  Similarity=0.156  Sum_probs=48.8

Q ss_pred             CcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhH-HHHHhcCChHHHHHhhcc-----------CCchhHHHHHHHHH
Q 013228          208 GVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQT-QCIINCGALPYLLGLLIH-----------NHKKSIKTDACWTI  275 (447)
Q Consensus       208 ~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~-~~~~~~~~l~~l~~~l~~-----------~~~~~v~~~a~~~l  275 (447)
                      -++|.++.++++.++.++..++.++..+....+... ..+.+.|..+.+.+.+..           .+...+-..+.-++
T Consensus       119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L  198 (282)
T PF10521_consen  119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL  198 (282)
T ss_pred             HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence            368999999999999999999999999987655332 235566666555444421           11445556666666


Q ss_pred             HHHh
Q 013228          276 SNIT  279 (447)
Q Consensus       276 ~nl~  279 (447)
                      ..++
T Consensus       199 ~~L~  202 (282)
T PF10521_consen  199 LSLL  202 (282)
T ss_pred             HHHH
Confidence            6663

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=86.12  E-value=44  Score=34.39  Aligned_cols=340  Identities=12%  Similarity=0.082  Sum_probs=165.4

Q ss_pred             ChhhHHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHH
Q 013228           71 TSEDTKVVIDHGAVPIFVKLLAS----PSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIAT  146 (447)
Q Consensus        71 ~~~~~~~~~~~~~i~~L~~ll~~----~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~  146 (447)
                      ..+....+.+.| +..++-++..    .+..+.-.++..|+.|+.+.. +...+.+.+++..|+..=+.   .....-..
T Consensus       339 y~e~lpv~~~~g-~~~~~~~~~~~~q~~d~~l~~~~~k~~~~l~~h~k-fa~~fv~~~gi~kll~vpr~---s~~~~g~s  413 (1516)
T KOG1832|consen  339 YVEVLPVLHEKG-VDVCIVLLERTSQLDDSPLLPDVMKLICALAAHRK-FAAMFVERRGILKLLAVPRV---SETFYGLS  413 (1516)
T ss_pred             HHHHHHHHHHhC-chhhhhhhhhhhccccccccHHHHHHHHHHHHhhH-HHHHHHHhhhhHHHhcCCCc---hhhhhhHH
Confidence            344444455544 4444444432    344455567777888877765 56677788888777765422   23333345


Q ss_pred             HHHHHhcCCCC------CCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-
Q 013228          147 WTLSNFCAGKP------KPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH-  219 (447)
Q Consensus       147 ~~L~~l~~~~~------~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-  219 (447)
                      .||+.+.....      .........++..-+.++..+...-+.++...+.-... .-.....+-....++.|+.++++ 
T Consensus       414 ~cly~~~~~q~~mervc~~p~~v~~~vv~~~~~l~~cs~~~~~~~~~~ff~~~f~-frail~~fd~~d~l~~l~~~~~~~  492 (1516)
T KOG1832|consen  414 SCLYTIGSLQGIMERVCALPLVVIHQVVKLAIELLDCSQDQARKNSALFFAAAFV-FRAILDAFDAQDSLQKLLAILKDA  492 (1516)
T ss_pred             HHHHHHhhhhhHHHHHhhccHHHHHHHHHHHHHHHhcchhhccchHHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHHHH
Confidence            56666654431      11122335666666777776554444333222211100 00111222233556666666532 


Q ss_pred             -------CC---c--------hhHhHHHHHHHHhhc-----CChhhHHHHHhcCChHHHHHhhccCC-----chhHHHHH
Q 013228          220 -------PS---P--------SVLTRALQTVVNIAA-----GDDFQTQCIINCGALPYLLGLLIHNH-----KKSIKTDA  271 (447)
Q Consensus       220 -------~~---~--------~v~~~a~~~l~~l~~-----~~~~~~~~~~~~~~l~~l~~~l~~~~-----~~~v~~~a  271 (447)
                             .+   +        ..-...|.++.....     .-+..++.-++.+.....++-+..++     ..+-..+.
T Consensus       493 ~~~~~~n~d~~l~e~~i~ss~Q~~~htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I  572 (1516)
T KOG1832|consen  493 ASVTGANTDRSLPEVMISSSKQMAFHTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAI  572 (1516)
T ss_pred             HHHhccCcCccccHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHH
Confidence                   11   1        111223444433321     11222223334445555444333221     11223445


Q ss_pred             HHHHHHHhcCCH-------HHHHHHHHcCChHHHHHHHhcC--------chhHHHHHHHHHHHhcCCCCHHHHHHHHHc-
Q 013228          272 CWTISNITAGNS-------EHIQAVIDAGLIGPLVNLLQNA--------EFDIKNWAARAISNATFGGTHEQIKYLVRE-  335 (447)
Q Consensus       272 ~~~l~nl~~~~~-------~~~~~l~~~~~~~~L~~~l~~~--------~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~-  335 (447)
                      +|.+-.+....+       .-...+.+.+++..++.+...+        ..++...|..+|+-+...  |.....+... 
T Consensus       573 ~~q~e~~~~~gp~f~~~~w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i--P~iq~~La~~~  650 (1516)
T KOG1832|consen  573 FLQLEKDRRLGPTFVKAQWPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI--PDIQKALAHAT  650 (1516)
T ss_pred             HHHHHHHHHhChhhhhhcchHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec--chHHHHHHHHH
Confidence            555544443222       2234466677777787776632        235566677766665553  3333333321 


Q ss_pred             -------CChHHHHhhcc----CCCHHHHHHHHHHHHHHHHhhhhhhhhhh-h--------------ccc-------ccH
Q 013228          336 -------GCIKPLCDLLL----CADPEIVTVFLKGLEKILKVGEAEKNMDI-A--------------IGD-------VNQ  382 (447)
Q Consensus       336 -------~~l~~L~~ll~----~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~--------------~~~-------~~~  382 (447)
                             .++..++..-.    -.|++++..|+.++.|+....+...+... +              ..+       ..+
T Consensus       651 ~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~  730 (1516)
T KOG1832|consen  651 LSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQ  730 (1516)
T ss_pred             hhcccccCceEEEeecccccccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHH
Confidence                   12222222211    14889999999999998866532221110 0              111       122


Q ss_pred             HHHHHHHhchHHHHHHHhcCCCH-----HHHHHHHHHHHHh
Q 013228          383 YAQLVEEAEGLEKIENLRSHDND-----EIHEKSVKILETY  418 (447)
Q Consensus       383 ~~~~i~~~~~~~~l~~l~~~~~~-----~v~~~a~~~l~~~  418 (447)
                      ..+.....+|++.|.+|++..+|     -++..|.+.|--+
T Consensus       731 mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GL  771 (1516)
T KOG1832|consen  731 MWEAVRGNDGIKILLKLLQYKNPPTTADCIRALACRVLLGL  771 (1516)
T ss_pred             HHHHHhcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhcc
Confidence            33445667899999999876543     3566666655443

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=86.00  E-value=2.7  Score=35.59  Aligned_cols=84  Identities=12%  Similarity=0.117  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHHHccCCCCchhhhhccC-------CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-HHHHhC
Q 013228           10 NNMQLEATTHIRKLLSNARSAPTEEVIPFG-------VVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDT-KVVIDH   81 (447)
Q Consensus        10 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~-------~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~   81 (447)
                      -+-|..|+.+|.+++-.  ..+.+.++..+       ++..|++++....++-.|+-|+-.|.+++..+.... ..-.+.
T Consensus       138 lSPqrlaLEaLcKLsV~--e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~  215 (257)
T PF12031_consen  138 LSPQRLALEALCKLSVI--ENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQK  215 (257)
T ss_pred             CCHHHHHHHHHHHhhee--ccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhh
Confidence            46789999999999887  34455555443       455667777766658899999999999998776655 444566


Q ss_pred             CChHHHHHhhCCCC
Q 013228           82 GAVPIFVKLLASPS   95 (447)
Q Consensus        82 ~~i~~L~~ll~~~~   95 (447)
                      +.|..|+.++++..
T Consensus       216 ~~i~~Li~FiE~a~  229 (257)
T PF12031_consen  216 PCISHLIAFIEDAE  229 (257)
T ss_pred             chHHHHHHHHHHHH
Confidence            89999999997643

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=85.92  E-value=4.8  Score=31.38  Aligned_cols=72  Identities=19%  Similarity=0.294  Sum_probs=55.9

Q ss_pred             ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhc-CCCHH---HHHHHH
Q 013228          337 CIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRS-HDNDE---IHEKSV  412 (447)
Q Consensus       337 ~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~-~~~~~---v~~~a~  412 (447)
                      ++..|..-|.+.++.++..|+..|..+++++...            |...+....+++.|..+.. +....   |++++.
T Consensus        43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~------------f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l  110 (140)
T PF00790_consen   43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPR------------FHREVASKEFLDELVKLIKSKKTDPETPVKEKIL  110 (140)
T ss_dssp             HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHH------------HHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHH------------HHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHH
Confidence            4667777888899999999999999999987653            5666766778888888644 44444   899999


Q ss_pred             HHHHHhcC
Q 013228          413 KILETYWC  420 (447)
Q Consensus       413 ~~l~~~~~  420 (447)
                      .++..+-.
T Consensus       111 ~ll~~W~~  118 (140)
T PF00790_consen  111 ELLQEWAE  118 (140)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98887643

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=85.61  E-value=53  Score=39.39  Aligned_cols=305  Identities=11%  Similarity=0.012  Sum_probs=139.7

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-------Ch-hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 013228           39 GVVPRFVEFLMREDYPQLQFEAAWALKNIVSG-------TS-EDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVA  110 (447)
Q Consensus        39 ~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~-------~~-~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~  110 (447)
                      -.++.|+..+...+ +.+......++..+...       .. .++..+ -.+.++.++++..++...-+...+..|..+.
T Consensus       984 i~ldal~~~l~~~~-~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi-~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~ 1061 (3550)
T KOG0889|consen  984 TFLDALVESLSHEN-SEMRPAGVRALKVIFSTSTLILGSPERAFKLPM-FEYLLEKLCHLCYDSTWYAKDGGVNGIKCLI 1061 (3550)
T ss_pred             HHHHHHHHHHhccc-hhhhhhHHHHHHHHHHHHHHhhcCcchhhccch-HHHHHHHHHHHhccHhHHHHcCCCceeeeeh
Confidence            35677778888777 67766666655554321       11 111111 1234455555555555555655555666665


Q ss_pred             cCChhHHHHHHhcCCHHHHHHHhcccc---ch---hHHHH-HHHHHHHhcCCC--CCCChhhHhhhHHHHHHhhccCChh
Q 013228          111 ADSARCRDLVLSEEALIPLLTQLNKHA---KL---SMLRI-ATWTLSNFCAGK--PKPIFDQVRPALPALAQLVHSNDKE  181 (447)
Q Consensus       111 ~~~~~~~~~~~~~~~l~~l~~~l~~~~---~~---~~~~~-a~~~L~~l~~~~--~~~~~~~~~~~l~~l~~ll~~~~~~  181 (447)
                      .+.+...-.-...+++.++...+..-.   ..   +.... ....+.....+.  +........+++..++.-+.++++.
T Consensus      1062 ~~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~ 1141 (3550)
T KOG0889|consen 1062 ESMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSD 1141 (3550)
T ss_pred             hhchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchH
Confidence            554421111112344556666663211   11   11111 222222222211  2233334467788888888899999


Q ss_pred             HHHHHHHHHHHhccCCcHHHHHHHHh--C--cHHHHHHhcCCCCchhHhHHHHHHHHhhcCCh-------hhHHHHHhcC
Q 013228          182 VMTDACRALFYLSEGTNDEIQAVIEA--G--VCPRLVELLGHPSPSVLTRALQTVVNIAAGDD-------FQTQCIINCG  250 (447)
Q Consensus       182 v~~~al~~l~~l~~~~~~~~~~~~~~--~--~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~-------~~~~~~~~~~  250 (447)
                      |+..+..+|.+++.........+++.  .  ..+.+..-+....-.++.--+.++..+....+       .........+
T Consensus      1142 VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p~~f~~~~~l~~l~~~~~ 1221 (3550)
T KOG0889|consen 1142 VREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLGPCLFDFTEELYRLKRFLI 1221 (3550)
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcCCcccCchHHHHHHHHHHH
Confidence            99999999999986553222222211  0  11111111222222233333333333322222       1111000000


Q ss_pred             C-----hHH---HHHhhccC---CchhHHHHHHHHHHHHhcCCHHHHH--HHHHcCChHHHHHHHhcCchhHHHHHHHHH
Q 013228          251 A-----LPY---LLGLLIHN---HKKSIKTDACWTISNITAGNSEHIQ--AVIDAGLIGPLVNLLQNAEFDIKNWAARAI  317 (447)
Q Consensus       251 ~-----l~~---l~~~l~~~---~~~~v~~~a~~~l~nl~~~~~~~~~--~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL  317 (447)
                      .     -..   +.+.....   ....+|..+...++..+...+....  .-...+++..+...+....+++...+..++
T Consensus      1222 ~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~l 1301 (3550)
T KOG0889|consen 1222 ALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVALEGL 1301 (3550)
T ss_pred             HhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            0     001   11111111   0123355555555544432221111  112345677778888888899999998888


Q ss_pred             HHhcCCCCHHHHHHHHHcCChHHHHhhccC
Q 013228          318 SNATFGGTHEQIKYLVREGCIKPLCDLLLC  347 (447)
Q Consensus       318 ~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~  347 (447)
                      .+.... +....+..++.+ +.+|...+.+
T Consensus      1302 ~~v~~~-~~~~~ke~lq~~-lrplL~~l~d 1329 (3550)
T KOG0889|consen 1302 RKVLAQ-DVKLPKELLQSH-LRPLLMNLSD 1329 (3550)
T ss_pred             Hhhhhc-cccccHHHHHhh-HHHHHHhhhH
Confidence            887664 222333334433 4444444444

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=84.51  E-value=48  Score=33.45  Aligned_cols=197  Identities=15%  Similarity=0.123  Sum_probs=100.2

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-hhHHHHHHhcCCHHHHHHHhcc---ccchhHHHHHHHHHHHhcCCC-C
Q 013228           83 AVPIFVKLLASPSDDIREQAVCALGNVAADS-ARCRDLVLSEEALIPLLTQLNK---HAKLSMLRIATWTLSNFCAGK-P  157 (447)
Q Consensus        83 ~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~l~~~l~~---~~~~~~~~~a~~~L~~l~~~~-~  157 (447)
                      .+..+..++.+....-.+ +...|..+.... .+..+.      +..+..++..   ..+..+...++.+++.+.... .
T Consensus       396 av~~i~~~I~~~~~~~~e-a~~~l~~l~~~~~~Pt~e~------l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~  468 (618)
T PF01347_consen  396 AVKFIKDLIKSKKLTDDE-AAQLLASLPFHVRRPTEEL------LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV  468 (618)
T ss_dssp             HHHHHHHHHHTT-S-HHH-HHHHHHHHHHT-----HHH------HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCCCHHH-HHHHHHHHHhhcCCCCHHH------HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence            456666666663322222 334444443222 112222      4445555532   223456666666666554322 0


Q ss_pred             ---------CCChhhHhhhHHHHHHhh----ccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC---C
Q 013228          158 ---------KPIFDQVRPALPALAQLV----HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHP---S  221 (447)
Q Consensus       158 ---------~~~~~~~~~~l~~l~~ll----~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~---~  221 (447)
                               .........+++.+...+    ...+..-+..++.+|+|+..           ...++.+..++...   .
T Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-----------~~~i~~l~~~i~~~~~~~  537 (618)
T PF01347_consen  469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-----------PESIPVLLPYIEGKEEVP  537 (618)
T ss_dssp             T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT------------GGGHHHHHTTSTTSS-S-
T ss_pred             cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-----------chhhHHHHhHhhhccccc
Confidence                     111122234444444444    45677888889999999863           13567777887665   5


Q ss_pred             chhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhcc-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHH
Q 013228          222 PSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIH-NHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVN  300 (447)
Q Consensus       222 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~-~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~  300 (447)
                      ..+|..|++++..++...+..        +.+.++.++.+ ..+.++|..|..+|... .-+..         .+..+..
T Consensus       538 ~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e~~EvRiaA~~~lm~~-~P~~~---------~l~~i~~  599 (618)
T PF01347_consen  538 HFIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTTEDPEVRIAAYLILMRC-NPSPS---------VLQRIAQ  599 (618)
T ss_dssp             HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS-HHHHHHHHHHHHHT----HH---------HHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCCCChhHHHHHHHHHHhc-CCCHH---------HHHHHHH
Confidence            788999999999887666533        23456676654 33678888887666653 22222         3444555


Q ss_pred             HHhc-CchhHHHHHHH
Q 013228          301 LLQN-AEFDIKNWAAR  315 (447)
Q Consensus       301 ~l~~-~~~~v~~~a~~  315 (447)
                      .+.. ++..|......
T Consensus       600 ~l~~E~~~QV~sfv~S  615 (618)
T PF01347_consen  600 SLWNEPSNQVASFVYS  615 (618)
T ss_dssp             HHTT-S-HHHHHHHHH
T ss_pred             HHhhCchHHHHHHHHH
Confidence            5653 34555544443

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species

Probab=84.40  E-value=26  Score=30.32  Aligned_cols=81  Identities=17%  Similarity=0.288  Sum_probs=53.4

Q ss_pred             cCCHHHHHHhhcCCCCH-------HHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHH
Q 013228           38 FGVVPRFVEFLMREDYP-------QLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASP--SDDIREQAVCALGN  108 (447)
Q Consensus        38 ~~~v~~L~~ll~~~~~~-------~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~i~~~a~~~L~~  108 (447)
                      ...++.++++++.++..       .+-+....++..++            .|-++.|..++.++  +.-+|..|+.+|..
T Consensus        72 ~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~------------~G~~~~L~~li~~~~~~~yvR~aa~~aL~~  139 (249)
T PF06685_consen   72 ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVG------------DGDIEPLKELIEDPDADEYVRMAAISALAF  139 (249)
T ss_pred             hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHh------------CCCHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            34899999999777610       11222223333333            36678888888875  57889999999999


Q ss_pred             hhcCChhHHHHHHhcCCHHHHHHH
Q 013228          109 VAADSARCRDLVLSEEALIPLLTQ  132 (447)
Q Consensus       109 l~~~~~~~~~~~~~~~~l~~l~~~  132 (447)
                      ++...+..|+.+.+  .+..++..
T Consensus       140 l~~~~~~~Re~vi~--~f~~ll~~  161 (249)
T PF06685_consen  140 LVHEGPISREEVIQ--YFRELLNY  161 (249)
T ss_pred             HHHcCCCCHHHHHH--HHHHHHHH
Confidence            99877777777644  24444443

The function of this family is unknown.

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=84.20  E-value=16  Score=32.60  Aligned_cols=70  Identities=16%  Similarity=0.297  Sum_probs=48.7

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-HHHHhCCChHHHHH----hhC--------CCCHHHHHHHHHHH
Q 013228           40 VVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDT-KVVIDHGAVPIFVK----LLA--------SPSDDIREQAVCAL  106 (447)
Q Consensus        40 ~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~L~~----ll~--------~~~~~i~~~a~~~L  106 (447)
                      ++|.++.++.+.+ +.++..++.+|..+....+... ..+...|..+.+-.    .+.        .+...+...+.-++
T Consensus       120 iiP~iL~llDD~~-~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L  198 (282)
T PF10521_consen  120 IIPPILNLLDDYS-PEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL  198 (282)
T ss_pred             HHhhHHHHhcCCC-HHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence            6899999999998 9999999999999987433322 33566665544433    332        23456777777777


Q ss_pred             HHhh
Q 013228          107 GNVA  110 (447)
Q Consensus       107 ~~l~  110 (447)
                      ..|+
T Consensus       199 ~~L~  202 (282)
T PF10521_consen  199 LSLL  202 (282)
T ss_pred             HHHH
Confidence            7774

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=83.95  E-value=20  Score=41.55  Aligned_cols=270  Identities=15%  Similarity=0.082  Sum_probs=134.1

Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHH----H-HhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCCh
Q 013228           87 FVKLLASPSDDIREQAVCALGNVAADSARCRDL----V-LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIF  161 (447)
Q Consensus        87 L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~----~-~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~  161 (447)
                      +...+...+++++..+......+-...+.+.+.    + .....+..+..+-..++++.++......+.   ..  ....
T Consensus       486 ~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~~--~~~~  560 (2341)
T KOG0891|consen  486 VDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN---ER--FDAQ  560 (2341)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc---cc--hhhh
Confidence            334555677888887766665554333221100    0 011123333333334445554443333322   00  1111


Q ss_pred             hhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChh
Q 013228          162 DQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDF  241 (447)
Q Consensus       162 ~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~  241 (447)
                      ..-...+..+...+++..-.++..+...+++++..++...-..+..-.+..+-.+-.+....+...+..-+..+....+.
T Consensus       561 laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~  640 (2341)
T KOG0891|consen  561 LAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPV  640 (2341)
T ss_pred             hcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHH
Confidence            11134445566666777778888888888888876653322222222233333333333333333333333333333333


Q ss_pred             hHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCchhHHHHHHHHHHHh
Q 013228          242 QTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQ-NAEFDIKNWAARAISNA  320 (447)
Q Consensus       242 ~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~-~~~~~v~~~a~~aL~~l  320 (447)
                      .....++ ..+..++..+..+ +..+.+.+..+++.||..+.+......+ ..++.+.+.+. .+...-+..+.+++.++
T Consensus       641 ~i~~~v~-~~l~~~~~~~~~~-~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l  717 (2341)
T KOG0891|consen  641 LISPYVG-PILLVLLPKLQDP-SSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQL  717 (2341)
T ss_pred             HHHhhcC-chHHHHHHHHhcc-chhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhh
Confidence            3332222 4556677777777 7788888999999998844333333344 45555666555 34566778888899988


Q ss_pred             cCCCCHHHHHHHHHcCChHHHHhhccCCC-HHHHHHHHHHHHHHH
Q 013228          321 TFGGTHEQIKYLVREGCIKPLCDLLLCAD-PEIVTVFLKGLEKIL  364 (447)
Q Consensus       321 ~~~~~~~~~~~l~~~~~l~~L~~ll~~~~-~~~~~~a~~~l~~l~  364 (447)
                      .....--...+...--++..+...+.... ..++..++..+.++.
T Consensus       718 ~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g  762 (2341)
T KOG0891|consen  718 ESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLG  762 (2341)
T ss_pred             hcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhc
Confidence            77432111111111122444444444332 344555555555443

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=83.75  E-value=12  Score=28.80  Aligned_cols=72  Identities=11%  Similarity=0.046  Sum_probs=58.3

Q ss_pred             ChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCH--HHHHHHHHHHHHHHH
Q 013228          294 LIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADP--EIVTVFLKGLEKILK  365 (447)
Q Consensus       294 ~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~--~~~~~a~~~l~~l~~  365 (447)
                      ++..|..-+.++++.++..|+..|-.+..++.......+.+.++++.|..++.....  .++..++..+..-..
T Consensus        38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~  111 (133)
T smart00288       38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD  111 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence            455677778889999999999999999999878777888888999999998887543  378777777766654

Unpublished observations. Domain of unknown function.

>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=83.50  E-value=45  Score=32.26  Aligned_cols=35  Identities=11%  Similarity=0.211  Sum_probs=29.6

Q ss_pred             HhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCc
Q 013228          164 VRPALPALAQLVHSNDKEVMTDACRALFYLSEGTN  198 (447)
Q Consensus       164 ~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~  198 (447)
                      ..+-+..+++-+++++++++..++..|......+.
T Consensus        45 lk~dLellVeriqd~d~~l~~~sLn~LkeviksSt   79 (881)
T COG5110          45 LKGDLELLVERIQDPDIDLQNNSLNMLKEVIKSST   79 (881)
T ss_pred             hcccHHHHHHHhhCCChHHHHHHHHHHHHHHhccc
Confidence            35678889999999999999999999988876544

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.42  E-value=51  Score=35.75  Aligned_cols=234  Identities=15%  Similarity=0.110  Sum_probs=109.5

Q ss_pred             ccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC---CCchhHhHHHHHHHHhhcCChh-hHHHHHhcCC
Q 013228          176 HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH---PSPSVLTRALQTVVNIAAGDDF-QTQCIINCGA  251 (447)
Q Consensus       176 ~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~---~~~~v~~~a~~~l~~l~~~~~~-~~~~~~~~~~  251 (447)
                      .....+++...+.++.++.....+..-.- -..+++.+-.....   ....+.+.+..++.-++...-. .-...+ .+.
T Consensus       852 s~~~~evr~~sl~~l~silet~ge~ll~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci-~~l  929 (1610)
T KOG1848|consen  852 SSRGVEVRISSLEALVSILETVGEHLLHG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCI-LDL  929 (1610)
T ss_pred             cCccceeeHHHHHHHHHHHhccchhhccc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHH-HHH
Confidence            34556777778888888876554321100 11222222222222   2345555555555544432110 000000 134


Q ss_pred             hHHHHHhhccCCchhHHHHHHHHHHHHhc---C-----CHHHH-HHHHH-------------cCC----hHHHHHHHhcC
Q 013228          252 LPYLLGLLIHNHKKSIKTDACWTISNITA---G-----NSEHI-QAVID-------------AGL----IGPLVNLLQNA  305 (447)
Q Consensus       252 l~~l~~~l~~~~~~~v~~~a~~~l~nl~~---~-----~~~~~-~~l~~-------------~~~----~~~L~~~l~~~  305 (447)
                      ++.+..+-+...+..+--.|...+.++..   .     +.+.. ...++             .++    +..|.++..++
T Consensus       930 idtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~ds 1009 (1610)
T KOG1848|consen  930 IDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDS 1009 (1610)
T ss_pred             HHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccc
Confidence            44555555443355555555544444322   1     11111 01111             111    22233333455


Q ss_pred             chhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccC----------------CCHHHHHHHHHHHHHHHHhhhh
Q 013228          306 EFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC----------------ADPEIVTVFLKGLEKILKVGEA  369 (447)
Q Consensus       306 ~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~----------------~~~~~~~~a~~~l~~l~~~~~~  369 (447)
                      ..+||..|+..+..+............++.-....++.+|++                ...+.....+.++.+++.-.-+
T Consensus      1010 r~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~fk 1089 (1610)
T KOG1848|consen 1010 RAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSENFK 1089 (1610)
T ss_pred             hHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHHHH
Confidence            688999999988887653322222222232334445555541                1123445566666666643221


Q ss_pred             hhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 013228          370 EKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYW  419 (447)
Q Consensus       370 ~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  419 (447)
                      .  .    -..|.+....+  ..+..+..+..+.++++.-.|...+++..
T Consensus      1090 ~--l----lnln~f~~vwe--~ll~flkrl~s~~s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1090 L--L----LNLNGFLDVWE--ELLQFLKRLHSDISPEISLSAIKALQELL 1131 (1610)
T ss_pred             H--H----HhcccHHHHHH--HHHHHHHHHHhcCChHhHHHHHHHHHHHH
Confidence            1  1    11222333333  23555666677889999888888887744

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]

Probab=82.96  E-value=39  Score=36.19  Aligned_cols=242  Identities=14%  Similarity=0.119  Sum_probs=129.7

Q ss_pred             hhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHH-HHHHhCcHH--------HHHHhcCC-CCchhHhHHHHHHHH
Q 013228          165 RPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQ-AVIEAGVCP--------RLVELLGH-PSPSVLTRALQTVVN  234 (447)
Q Consensus       165 ~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~-~~~~~~~~~--------~L~~lL~~-~~~~v~~~a~~~l~~  234 (447)
                      .+.+..|+..+-++..++|+-+.-+++.+......... ..++.-++.        .+-.+..+ --..++..++++|+.
T Consensus        76 ~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~  155 (1549)
T KOG0392|consen   76 LSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGA  155 (1549)
T ss_pred             HHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHH
Confidence            56677777777788888888887777777643222111 112211111        11111221 124688899999998


Q ss_pred             hhcCChh-hHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHH
Q 013228          235 IAAGDDF-QTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWA  313 (447)
Q Consensus       235 l~~~~~~-~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a  313 (447)
                      +...-.. ...     ..++.+..++..+ ..+++.-....+........+....+.. .+++..+..+.+.+.+++..|
T Consensus       156 ~l~~~~~s~~~-----~~~~il~q~~~q~-~w~ir~Ggll~iky~~air~d~l~~~~~-~vl~~~i~~L~ds~ddv~~~a  228 (1549)
T KOG0392|consen  156 YLKHMDESLIK-----ETLDILLQMLRQP-NWEIRHGGLLGIKYNVAIRQDLLFQLLN-LVLDFVIEGLEDSDDDVRSVA  228 (1549)
T ss_pred             HHHhhhhHhhH-----HHHHHHHHHHcCc-chhheechHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhcchHHHHHH
Confidence            8764432 222     3567888888877 6777665555554333211122222222 267777788888899999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCH--HHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHH-Hh
Q 013228          314 ARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADP--EIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVE-EA  390 (447)
Q Consensus       314 ~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~--~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~-~~  390 (447)
                      +..+.-.....-....+.+..  ++..+...+..-+.  .-.......+..++...+...           +..... +.
T Consensus       229 a~~l~~~~s~~v~l~~~~i~~--lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~-----------l~~~~n~~~  295 (1549)
T KOG0392|consen  229 AQFLVPAPSIQVKLMVQKIAK--LVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLD-----------LFEQQNLEV  295 (1549)
T ss_pred             HHHhhhhhHHHHhhhHhHHHH--HHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHH-----------HHHHhhhhh
Confidence            988877765321111111111  22333322222111  000111112222222211111           122222 24


Q ss_pred             chHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCCC
Q 013228          391 EGLEKIENLRSHDNDEIHEKSVKILETYWCGRVAGP  426 (447)
Q Consensus       391 ~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~  426 (447)
                      |.++++-....|.-..++..+.+.+..+.+.++..+
T Consensus       296 ~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~~~qs~  331 (1549)
T KOG0392|consen  296 GLVPRLWPFLRHTISSVRRAALETLAMLLEADDQSD  331 (1549)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            677778778888888899999999999988775444

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain

Probab=82.87  E-value=9.5  Score=28.46  Aligned_cols=71  Identities=14%  Similarity=0.200  Sum_probs=51.6

Q ss_pred             ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHH------hcCCCHHHHHH
Q 013228          337 CIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENL------RSHDNDEIHEK  410 (447)
Q Consensus       337 ~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l------~~~~~~~v~~~  410 (447)
                      ++..|..-+.+.++.++..++..|..+++++...            |...+.....+..+..+      ....+..|+++
T Consensus        38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~------------f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k  105 (115)
T cd00197          38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGER------------FHQEVASNDFAVELLKFDKSKLLGDDVSTNVREK  105 (115)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHH------------HHHHHHHhHHHHHHHHhhccccccCCCChHHHHH
Confidence            4666767777889999999999999999988764            45555555555555332      12347889999


Q ss_pred             HHHHHHHhc
Q 013228          411 SVKILETYW  419 (447)
Q Consensus       411 a~~~l~~~~  419 (447)
                      +..+++.+.
T Consensus       106 ~~~l~~~w~  114 (115)
T cd00197         106 AIELVQLWA  114 (115)
T ss_pred             HHHHHHHHh
Confidence            999988764

The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=82.87  E-value=3.1  Score=36.69  Aligned_cols=133  Identities=11%  Similarity=0.026  Sum_probs=75.1

Q ss_pred             CChhHHHHHHHHHHHhccCCcHHHHHHHHh-C--cHHHHHHhcCCC---CchhHhHHHHHHHHhhcCChhhH-HHHHhcC
Q 013228          178 NDKEVMTDACRALFYLSEGTNDEIQAVIEA-G--VCPRLVELLGHP---SPSVLTRALQTVVNIAAGDDFQT-QCIINCG  250 (447)
Q Consensus       178 ~~~~v~~~al~~l~~l~~~~~~~~~~~~~~-~--~~~~L~~lL~~~---~~~v~~~a~~~l~~l~~~~~~~~-~~~~~~~  250 (447)
                      ..+..+.-++++++|+..+...+.. +.+. +  ++..+.......   +..++..+...+.|++....... ..-....
T Consensus       122 ~~~~~~ml~lR~l~NlF~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~  200 (268)
T PF08324_consen  122 SPPANQMLALRLLANLFSHPPGRQL-LLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSE  200 (268)
T ss_dssp             SSHHHHHHHHHHHHHHTTSCCCHHH-HHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHH
T ss_pred             CcHHHHHHHHHHHHHhhCCCccHHH-HHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence            4677788899999999987665532 3222 2  233333333333   67888889999999874221111 0001112


Q ss_pred             ChHHHHH-hhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHHHh-cCchhHHHH
Q 013228          251 ALPYLLG-LLIHNHKKSIKTDACWTISNITAGNSEHIQAVID-AGLIGPLVNLLQ-NAEFDIKNW  312 (447)
Q Consensus       251 ~l~~l~~-~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-~~~~~~L~~~l~-~~~~~v~~~  312 (447)
                      .+..+.+ +.....+++....++.+++++...++.. ....+ .|+-..+-..-. ..++.++.-
T Consensus       201 ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~-~~~~~~l~~~~~~~~~~~~~~e~ri~~v  264 (268)
T PF08324_consen  201 LLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSA-KQLAKSLDVKSVLSKKANKSKEPRIKEV  264 (268)
T ss_dssp             HHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHH-HHHCCCCTHHHHHHHHHHHTTSHHHHHH
T ss_pred             HHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhH-HHHHHHcChHHHHHHHHhcccchHHHHH
Confidence            4556666 3333238899999999999999765443 33333 333333333332 234444443

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=82.74  E-value=34  Score=33.47  Aligned_cols=173  Identities=10%  Similarity=0.057  Sum_probs=101.3

Q ss_pred             CCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhc--c--------ccchhHHHHHHHHHHHhcCCCCCCChh
Q 013228           93 SPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLN--K--------HAKLSMLRIATWTLSNFCAGKPKPIFD  162 (447)
Q Consensus        93 ~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~--~--------~~~~~~~~~a~~~L~~l~~~~~~~~~~  162 (447)
                      +++.++...+-..|..+..+-+       +...+..|..+..  .        ..+..++...+..|.   +..  ....
T Consensus       248 d~~~~V~~~ae~~LKr~~~~~e-------d~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~---kS~--~Aa~  315 (501)
T PF13001_consen  248 DSNSSVSDRAEDLLKRLSVSLE-------DPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLS---KSV--IAAT  315 (501)
T ss_pred             CCcchHHHHHHHHHhhcCCCCC-------CHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHH---HhH--HHHh
Confidence            4667888888888888775411       2223555666553  1        123445555444443   321  1111


Q ss_pred             hHhhhHHHHHHhhccC--ChhHHHHHHHHH---HHhccCCcHHHHHHHHhCcHHHHHHhcC--------CCCchhHhHHH
Q 013228          163 QVRPALPALAQLVHSN--DKEVMTDACRAL---FYLSEGTNDEIQAVIEAGVCPRLVELLG--------HPSPSVLTRAL  229 (447)
Q Consensus       163 ~~~~~l~~l~~ll~~~--~~~v~~~al~~l---~~l~~~~~~~~~~~~~~~~~~~L~~lL~--------~~~~~v~~~a~  229 (447)
                      ....++..+...+.+.  +..++..++..+   .....+.....-..+...+...+.+.+.        ..+...|..+.
T Consensus       316 ~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aY  395 (501)
T PF13001_consen  316 SFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAY  395 (501)
T ss_pred             CCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHH
Confidence            1234455555556655  567777777777   5555443332222222223333333342        24567899999


Q ss_pred             HHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc
Q 013228          230 QTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA  280 (447)
Q Consensus       230 ~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~  280 (447)
                      .+||.|+...+....  -+.+.+..|.+-|..+ .++++...-.+|+.++.
T Consensus       396 e~lG~L~~~~p~l~~--~d~~li~~LF~sL~~~-~~evr~sIqeALssl~~  443 (501)
T PF13001_consen  396 ETLGLLAKRAPSLFS--KDLSLIEFLFDSLEDE-SPEVRVSIQEALSSLAP  443 (501)
T ss_pred             HHHHHHHccCccccc--ccHHHHHHHHHHhhCc-chHHHHHHHHHHHHHHH
Confidence            999999988875421  2346788888888777 89999888888888875

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor

Probab=82.33  E-value=23  Score=35.85  Aligned_cols=81  Identities=16%  Similarity=0.176  Sum_probs=61.8

Q ss_pred             CHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHh
Q 013228           95 SDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQL  174 (447)
Q Consensus        95 ~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~l  174 (447)
                      .+..|..++..|+.+....+..-..+.+...+..|+..|..+.+..+...|+.+|.-|.-.-+.........++....++
T Consensus        81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~~Lf~If~Rl  160 (668)
T PF04388_consen   81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLPDLFNIFGRL  160 (668)
T ss_pred             CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH
Confidence            46778899999999998777777788888999999999988888888888988888877554444444445555555555


Q ss_pred             h
Q 013228          175 V  175 (447)
Q Consensus       175 l  175 (447)
                      +
T Consensus       161 ~  161 (668)
T PF04388_consen  161 L  161 (668)
T ss_pred             H
Confidence            5

The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].

>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species

Probab=81.93  E-value=33  Score=29.70  Aligned_cols=130  Identities=14%  Similarity=0.128  Sum_probs=65.9

Q ss_pred             HHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCC-chhHHHHHHHHHHHHhcCCH
Q 013228          205 IEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNH-KKSIKTDACWTISNITAGNS  283 (447)
Q Consensus       205 ~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~-~~~v~~~a~~~l~nl~~~~~  283 (447)
                      .+...++.++++++.++..+-    ..++-.....-...-..+-.|-++.|.+++.++. +.-+|..|+.++..++...+
T Consensus        70 re~~A~~~li~l~~~~~~~~~----~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~  145 (249)
T PF06685_consen   70 REERALPPLIRLFSQDDDFLE----DLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGP  145 (249)
T ss_pred             hhhhhHHHHHHHHcCCcchHH----HHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCC
Confidence            344678999999976554211    1111111101011111122356667777777653 56788999999999988766


Q ss_pred             HHHHHHHHcCChHHHHHH-HhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHH
Q 013228          284 EHIQAVIDAGLIGPLVNL-LQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKP  340 (447)
Q Consensus       284 ~~~~~l~~~~~~~~L~~~-l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~  340 (447)
                      ..+..+++.  +..++.. +...+..+--.-+..++.+-...--..++.+.+.|.++.
T Consensus       146 ~~Re~vi~~--f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~  201 (249)
T PF06685_consen  146 ISREEVIQY--FRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRKAFEDGLVDP  201 (249)
T ss_pred             CCHHHHHHH--HHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHHHHHcCCCCc
Confidence            666666653  3334443 443333333333333333322212223444555666554

The function of this family is unknown.

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=81.79  E-value=17  Score=28.37  Aligned_cols=74  Identities=9%  Similarity=0.043  Sum_probs=57.4

Q ss_pred             ChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCC-HH---HHHHHHHHHHHHHHhh
Q 013228          294 LIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCAD-PE---IVTVFLKGLEKILKVG  367 (447)
Q Consensus       294 ~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~-~~---~~~~a~~~l~~l~~~~  367 (447)
                      ++..|..-+.++++.++..|+..|-.+..++.+.....+....+++.|..++.... ..   ++..++..+.......
T Consensus        43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f  120 (140)
T PF00790_consen   43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF  120 (140)
T ss_dssp             HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence            45567777888999999999999999999877777777777788899999887543 33   7888777777665443

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []

Probab=81.38  E-value=14  Score=32.51  Aligned_cols=76  Identities=14%  Similarity=0.144  Sum_probs=48.9

Q ss_pred             CHHHHHHHHHHHHHHHHhhhhhhhhh---hhcccccHHHHHHHHhchHHHHHHHhcCC-CHHHHHHHHHHHHHhcCCCCC
Q 013228          349 DPEIVTVFLKGLEKILKVGEAEKNMD---IAIGDVNQYAQLVEEAEGLEKIENLRSHD-NDEIHEKSVKILETYWCGRVA  424 (447)
Q Consensus       349 ~~~~~~~a~~~l~~l~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~l~~l~~~~-~~~v~~~a~~~l~~~~~~~~~  424 (447)
                      +..+.+.++..+.|++...+......   ......+.+...|.+.|..+.|..+..+. ..+......+++.-+|.+.+.
T Consensus       133 d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~~~p  212 (266)
T PF04821_consen  133 DNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKGQDP  212 (266)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcCCCH
Confidence            44688899999999998743321110   01123445667788899999999998776 334444556666666655553

This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.

>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []

Probab=80.69  E-value=42  Score=34.70  Aligned_cols=91  Identities=12%  Similarity=0.116  Sum_probs=64.1

Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHh
Q 013228          265 KSIKTDACWTISNITAGNSEHIQAVID-AGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCD  343 (447)
Q Consensus       265 ~~v~~~a~~~l~nl~~~~~~~~~~l~~-~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~  343 (447)
                      ..+......+|..++..+++....++. .+....++.++-+++.++.+.|...|........           -.+.+..
T Consensus       495 ~~~~~~~~~il~rls~~~~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~-----------R~e~i~~  563 (727)
T PF12726_consen  495 GQITDLISQILERLSDFDPSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDG-----------RLEAIQA  563 (727)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCc-----------HHHHHHH
Confidence            345566778888998888888888775 6788899999999999999999999988875432           2444444


Q ss_pred             hccCCCHHHHHHHHHHHHHHHHh
Q 013228          344 LLLCADPEIVTVFLKGLEKILKV  366 (447)
Q Consensus       344 ll~~~~~~~~~~a~~~l~~l~~~  366 (447)
                      ++++.-........+.+.++.+.
T Consensus       564 ll~~~~~~tL~ai~~~l~~~~~~  586 (727)
T PF12726_consen  564 LLQSNFSPTLSAINWSLRQLTKL  586 (727)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHhh
Confidence            55544444455555555555544

The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=80.51  E-value=64  Score=32.03  Aligned_cols=160  Identities=16%  Similarity=0.135  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHHHcCCChhhHHHHH---hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHH
Q 013228           54 PQLQFEAAWALKNIVSGTSEDTKVVI---DHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLL  130 (447)
Q Consensus        54 ~~v~~~a~~~L~~l~~~~~~~~~~~~---~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~  130 (447)
                      ++++.-|+.+|.-+..+..-+...+.   .+..+..++..+. .++..+-.++++|.|+-.+ +..++.+...  ...++
T Consensus       558 ~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~--~~~i~  633 (745)
T KOG0301|consen  558 VEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSR--LESIL  633 (745)
T ss_pred             HHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHH--HHHHh
Confidence            57788888888888775444433333   2234445555544 4577788899999999887 4456665543  33333


Q ss_pred             HHhc---cccchhHHHHHHHHHHHhcCCC--CCCChhhHhhhHHHHHHhhcc-CChhHHHHHHHHHHHhccCCcHHHHHH
Q 013228          131 TQLN---KHAKLSMLRIATWTLSNFCAGK--PKPIFDQVRPALPALAQLVHS-NDKEVMTDACRALFYLSEGTNDEIQAV  204 (447)
Q Consensus       131 ~~l~---~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~l~~l~~ll~~-~~~~v~~~al~~l~~l~~~~~~~~~~~  204 (447)
                      ..+.   ..++..++........|++--.  ...+....+-+...+..++.. +|-+.....+.+|++++..+.... .+
T Consensus       634 ~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~-~~  712 (745)
T KOG0301|consen  634 DPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVI-QL  712 (745)
T ss_pred             hhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHH-HH
Confidence            3221   2333444444332222322111  111111112222222333332 233456667888888887665443 34


Q ss_pred             HHhCcHHHHHHhcC
Q 013228          205 IEAGVCPRLVELLG  218 (447)
Q Consensus       205 ~~~~~~~~L~~lL~  218 (447)
                      .+.--+..++..++
T Consensus       713 A~~~~v~sia~~~~  726 (745)
T KOG0301|consen  713 AKNRSVDSIAKKLK  726 (745)
T ss_pred             HHhcCHHHHHHHHH
Confidence            44445555555553

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=80.40  E-value=66  Score=32.14  Aligned_cols=134  Identities=16%  Similarity=0.107  Sum_probs=78.8

Q ss_pred             HHHHHHHhccc---cchhHHHHHHHHHHHhcC----CCCCCChhhHhhhHHHHHHhhc----cCChhHHHHHHHHHHHhc
Q 013228          126 LIPLLTQLNKH---AKLSMLRIATWTLSNFCA----GKPKPIFDQVRPALPALAQLVH----SNDKEVMTDACRALFYLS  194 (447)
Q Consensus       126 l~~l~~~l~~~---~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~~l~~l~~ll~----~~~~~v~~~al~~l~~l~  194 (447)
                      +..+..++...   ....++..+..+++.+..    +.+.........+++.+...|.    ..+...+...+.+|+|+.
T Consensus       395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g  474 (574)
T smart00638      395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG  474 (574)
T ss_pred             HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC
Confidence            55566666322   234566666666666553    2222112233556666665554    456666777899999887


Q ss_pred             cCCcHHHHHHHHhCcHHHHHHhcC---CCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhcc-CCchhHHHH
Q 013228          195 EGTNDEIQAVIEAGVCPRLVELLG---HPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIH-NHKKSIKTD  270 (447)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~L~~lL~---~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~-~~~~~v~~~  270 (447)
                      ...           .+..+..++.   ..+..+|..|+++|..++...+..        +-+.++.++.+ ..+.++|..
T Consensus       475 ~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~EvRia  535 (574)
T smart00638      475 HPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEVRMA  535 (574)
T ss_pred             Chh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHHHHH
Confidence            422           2344444443   234679999999999888655533        22355666654 337788888


Q ss_pred             HHHHHHHH
Q 013228          271 ACWTISNI  278 (447)
Q Consensus       271 a~~~l~nl  278 (447)
                      |+..+...
T Consensus       536 A~~~lm~t  543 (574)
T smart00638      536 AVLVLMET  543 (574)
T ss_pred             HHHHHHhc
Confidence            87776654

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=80.16  E-value=51  Score=30.64  Aligned_cols=154  Identities=15%  Similarity=0.078  Sum_probs=90.2

Q ss_pred             HHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhc----------cCChhHHHHHHHHHHHhccCC
Q 013228          128 PLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVH----------SNDKEVMTDACRALFYLSEGT  197 (447)
Q Consensus       128 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~----------~~~~~v~~~al~~l~~l~~~~  197 (447)
                      .+...|.++.....+..++..+.-|+++............+..|..+-+          .++..+...++.||+|+..++
T Consensus        49 ~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~S  128 (532)
T KOG4464|consen   49 RIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHS  128 (532)
T ss_pred             HHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhcc
Confidence            4455554444455566666777777776533333333444555554432          234578899999999999888


Q ss_pred             cHHHHHHHHhCcHHHHHHhcCCC----C-chhHhHHHHHHHHhhcCC-hhhHHHHHhcCChHHHHHhhccCC--------
Q 013228          198 NDEIQAVIEAGVCPRLVELLGHP----S-PSVLTRALQTVVNIAAGD-DFQTQCIINCGALPYLLGLLIHNH--------  263 (447)
Q Consensus       198 ~~~~~~~~~~~~~~~L~~lL~~~----~-~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~l~~l~~~l~~~~--------  263 (447)
                      +.......+......+.+.+...    - ..+...-++.|--+.... ....+.+.+.++++.+-+++.++.        
T Consensus       129 q~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n~  208 (532)
T KOG4464|consen  129 QRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEINV  208 (532)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcCC
Confidence            87766777777777766665221    1 122222233333333222 344556677889999999886421        


Q ss_pred             ------chhHHHHHHHHHHHHhcC
Q 013228          264 ------KKSIKTDACWTISNITAG  281 (447)
Q Consensus       264 ------~~~v~~~a~~~l~nl~~~  281 (447)
                            +....-++..++.|+..+
T Consensus       209 ~~l~pqe~n~a~EaLK~~FNvt~~  232 (532)
T KOG4464|consen  209 PPLNPQETNRACEALKVFFNVTCD  232 (532)
T ss_pred             CCCCHHHHHHHHHHHHHHhheeec
Confidence                  123345667777787763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	447
4b8j_A	528	Rimp_alpha1a Length = 528		0.0
2yns_A	490	Rimp_alpha_b54nls Length = 490		0.0
3tj3_A	447	Structure Of Importin A5 Bound To The N-Terminus Of		1e-113
2jdq_A	450	C-Terminal Domain Of Influenza A Virus Polymerase P		1e-113
1wa5_B	530	Crystal Structure Of The Exportin Cse1p Complexed W		1e-112
1wa5_B	530	Crystal Structure Of The Exportin Cse1p Complexed W		8e-13
1bk5_A	422	Karyopherin Alpha From Saccharomyces Cerevisiae Len		1e-112
1bk5_A	422	Karyopherin Alpha From Saccharomyces Cerevisiae Len		1e-11
1bk6_A	422	Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng		1e-111
1bk6_A	422	Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng		1e-11
1ee4_A	423	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-111
1ee4_A	423	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-11
1ee5_A	424	Yeast Karyopherin (Importin) Alpha In A Complex Wit		1e-111
1ee5_A	424	Yeast Karyopherin (Importin) Alpha In A Complex Wit		1e-11
1un0_A	443	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-111
1un0_A	443	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-11
2c1t_A	454	Structure Of The Kap60p:nup2 Complex Length = 454		1e-111
2c1t_A	454	Structure Of The Kap60p:nup2 Complex Length = 454		1e-11
3l3q_A	427	Mouse Importin Alpha-Peptm Nls Peptide Complex Leng		9e-94
3rz9_A	510	Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt		9e-94
1q1s_C	466	Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid		1e-93
4htv_A	509	Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex		1e-93
3ukw_B	510	Mouse Importin Alpha: Bimax1 Peptide Complex Length		1e-93
4ba3_A	496	Mimp_alphadibb_a89nls Length = 496		1e-93
2ynr_A	461	Mimp_alphadibb_b54nls Length = 461		1e-93
1y2a_C	428	Structure Of Mammalian Importin Bound To The Non-Cl		1e-93
3ve6_A	426	Crystal Structure Analysis Of Venezuelan Equine Enc		1e-93
3btr_C	427	Ar-Nls:importin-Alpha Complex Length = 427		1e-93
3tpm_A	422	Crystal Structure Of Mal Rpel Domain In Complex Wit		2e-93
2c1m_A	424	Nup50:importin-Alpha Complex Length = 424		2e-93
1ial_A	453	Importin Alpha, Mouse Length = 453		2e-93
1ejl_I	460	Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti		2e-93
3tpo_A	529	Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP		7e-93
3fex_C	467	Crystal Structure Of The Cbc-Importin Alpha Complex		9e-93
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		1e-35
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		1e-29
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		5e-29
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		8e-26
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		5e-27
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		1e-20
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		5e-24

>pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528

Iteration: 1
 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/441 (72%), Positives = 365/441 (82%), Gaps = 11/441 (2%)
Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
           M+ GV+SDDNN+QLEATT  RKLLS  RS P EEVI  GVVPRFV+FL RED+PQLQFEA
Sbjct: 79  MIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEA 138
Query: 61  AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
           AWAL NI SGTSE+TKVVIDHGAVPIFVKLL S SDD+REQAV ALGNVA DS +CRDLV
Sbjct: 139 AWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLV 198
Query: 121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDK 180
           L+  AL+PLL QLN+H KLSMLR ATWTLSNFC GKP+P F+Q RPALPALA+L+HSND+
Sbjct: 199 LANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDE 258
Query: 181 EVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD 240
           EV+TDAC AL YLS+GTND+IQAVIEAGVCPRLVELL HPSPSVL  AL+TV NI  GDD
Sbjct: 259 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDD 318
Query: 241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVN 300
            QTQCII+  ALP LL LL  N KKSIK +ACWTISNITAGN + IQAVI+AG+IGPLVN
Sbjct: 319 AQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVN 378
Query: 301 LLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGL 360
           LLQ AEFDIK  AA AISNAT GG+H+QIKYLV EGCIKPLCDLL+C D  IVTV L+GL
Sbjct: 379 LLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGL 438
Query: 361 EKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWC 420
           E ILKVGE +K +  A GDVN ++Q+++EAEGLEKIENL+SHDN+EI+EK+VKILE YW 
Sbjct: 439 ENILKVGETDKTL--AAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWM 496
Query: 421 GRVAGPQPGNEGEDALGSNVI 441
                    +E +D +G+  +
Sbjct: 497 ---------DEEDDTMGATTV 508

>pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490

Iteration: 1
 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/441 (72%), Positives = 365/441 (82%), Gaps = 11/441 (2%)
Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
           M+ GV+SDDNN+QLEATT  RKLLS  RS P EEVI  GVVPRFV+FL RED+PQLQFEA
Sbjct: 41  MIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEA 100
Query: 61  AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
           AWAL NI SGTSE+TKVVIDHGAVPIFVKLL S SDD+REQAV ALGNVA DS +CRDLV
Sbjct: 101 AWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLV 160
Query: 121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDK 180
           L+  AL+PLL QLN+H KLSMLR ATWTLSNFC GKP+P F+Q RPALPALA+L+HSND+
Sbjct: 161 LANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDE 220
Query: 181 EVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD 240
           EV+TDAC AL YLS+GTND+IQAVIEAGVCPRLVELL HPSPSVL  AL+TV NI  GDD
Sbjct: 221 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDD 280
Query: 241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVN 300
            QTQCII+  ALP LL LL  N KKSIK +ACWTISNITAGN + IQAVI+AG+IGPLVN
Sbjct: 281 AQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVN 340
Query: 301 LLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGL 360
           LLQ AEFDIK  AA AISNAT GG+H+QIKYLV EGCIKPLCDLL+C D  IVTV L+GL
Sbjct: 341 LLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGL 400
Query: 361 EKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWC 420
           E ILKVGE +K +  A GDVN ++Q+++EAEGLEKIENL+SHDN+EI+EK+VKILE YW 
Sbjct: 401 ENILKVGETDKTL--AAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWM 458
Query: 421 GRVAGPQPGNEGEDALGSNVI 441
                    +E +D +G+  +
Sbjct: 459 ---------DEEDDTMGATTV 470

>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447

Iteration: 1
 Score =  403 bits (1036), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 230/437 (52%), Positives = 290/437 (66%), Gaps = 14/437 (3%)
Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPF-GVVPRFVEFLMREDYPQLQFE 59
           M+  ++S     QL AT   RKLLS   + P +EVI   GVV RFVEFL R++   LQFE
Sbjct: 22  MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 81
Query: 60  AAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDL 119
           +AW L NI SG S  T++VI  GAVPIF++LL+S  +D++EQAV ALGN+A DS  CRD 
Sbjct: 82  SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 141
Query: 120 VLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLVHSN 178
           VL    L PLL   +K  +L+M R A W LSN C GK P P F +V P L  L+ L+  +
Sbjct: 142 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 201
Query: 179 DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG 238
           D +V+ DAC AL YLS+G ND+IQAVI+AGVC RLVELL H    V++ AL+ V NI  G
Sbjct: 202 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 261
Query: 239 DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPL 298
           DD QTQ I+NC AL   L  L+ + K+SIK +ACWTISNITAGN   IQ VIDA +   L
Sbjct: 262 DDIQTQVILNCSAL-QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 320
Query: 299 VNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLK 358
           +++LQ AEF  +  AA AI+NAT GG+ EQIKYLV  GCIKPLCDLL   D +IV V L 
Sbjct: 321 ISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALN 380
Query: 359 GLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETY 418
           GLE IL++GE E   +   G +N Y  L+EEA GL+KIE L+SH+N EI++K+  ++E Y
Sbjct: 381 GLENILRLGEQEAKRN-GTG-INPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHY 438
Query: 419 WCGRVAGPQPGNEGEDA 435
           +         G E ED+
Sbjct: 439 F---------GTEDEDS 446

>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450

Iteration: 1
 Score =  403 bits (1036), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 230/437 (52%), Positives = 290/437 (66%), Gaps = 14/437 (3%)
Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPF-GVVPRFVEFLMREDYPQLQFE 59
           M+  ++S     QL AT   RKLLS   + P +EVI   GVV RFVEFL R++   LQFE
Sbjct: 25  MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 84
Query: 60  AAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDL 119
           +AW L NI SG S  T++VI  GAVPIF++LL+S  +D++EQAV ALGN+A DS  CRD 
Sbjct: 85  SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144
Query: 120 VLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLVHSN 178
           VL    L PLL   +K  +L+M R A W LSN C GK P P F +V P L  L+ L+  +
Sbjct: 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 204
Query: 179 DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG 238
           D +V+ DAC AL YLS+G ND+IQAVI+AGVC RLVELL H    V++ AL+ V NI  G
Sbjct: 205 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264
Query: 239 DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPL 298
           DD QTQ I+NC AL   L  L+ + K+SIK +ACWTISNITAGN   IQ VIDA +   L
Sbjct: 265 DDIQTQVILNCSAL-QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 323
Query: 299 VNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLK 358
           +++LQ AEF  +  AA AI+NAT GG+ EQIKYLV  GCIKPLCDLL   D +IV V L 
Sbjct: 324 ISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALN 383
Query: 359 GLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETY 418
           GLE IL++GE E   +   G +N Y  L+EEA GL+KIE L+SH+N EI++K+  ++E Y
Sbjct: 384 GLENILRLGEQEAKRN-GTG-INPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHY 441
Query: 419 WCGRVAGPQPGNEGEDA 435
           +         G E ED+
Sbjct: 442 F---------GTEDEDS 449

>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530

Iteration: 1
 Score =  400 bits (1029), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 227/424 (53%), Positives = 289/424 (68%), Gaps = 11/424 (2%)
Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQ-LQFE 59
           M   + SDD   QL AT   R++LS     P + VI  GVVPR VEF MRE+ P+ LQ E
Sbjct: 92  MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEMLQLE 150
Query: 60  AAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDL 119
           AAWAL NI SGTS  TKVV+D  AVP+F++LL + S +++EQA+ ALGNVA DS   RD 
Sbjct: 151 AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY 210
Query: 120 VLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAG-KPKPIFDQVRPALPALAQLVHSN 178
           VL   A+ P+L   N + K S++R ATWTLSN C G KP+P +  V  ALP LA+L++S 
Sbjct: 211 VLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 269
Query: 179 DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG 238
           D E + DAC A+ YLS+G  + IQAVI+  +  RLVELL H S  V T AL+ V NI  G
Sbjct: 270 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG 329
Query: 239 DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPL 298
           +D QTQ +IN G LP  L LL+ + K++IK +ACWTISNITAGN+E IQAVIDA LI PL
Sbjct: 330 NDLQTQVVINAGVLP-ALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPL 388
Query: 299 VNLLQNAEFDIKNWAARAISNATFGGTHEQ--IKYLVREGCIKPLCDLLLCADPEIVTVF 356
           V LL+ AE+  K  A  AISNA+ GG      I+YLV +GCIKPLCDLL  AD  I+ V 
Sbjct: 389 VKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVT 448
Query: 357 LKGLEKILKVGEAEKNMDIAIG-DVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKIL 415
           L  LE ILK+GEA+K    A G ++N+ A  +E+A G+EKI N + ++ND+I+EK+ KI+
Sbjct: 449 LDALENILKMGEADKE---ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 505
Query: 416 ETYW 419
           ETY+
Sbjct: 506 ETYF 509

>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530

Iteration: 1
 Score = 71.6 bits (174), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 92/196 (46%), Gaps = 4/196 (2%)
Query: 160 IFDQVRPALPALAQLVHSND-KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLG 218
            + Q++  LP + Q ++S+D +E ++   +    LS      I  VI+AGV PRLVE + 
Sbjct: 81  FYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMR 140
Query: 219 HPSPSVLT-RALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISN 277
              P +L   A   + NIA+G   QT+ +++  A+P  + LL +     +K  A W + N
Sbjct: 141 ENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL-YTGSVEVKEQAIWALGN 199
Query: 278 ITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGC 337
           +   ++++   V+    + P++ L  + +  +   A   +SN    G   Q  + V    
Sbjct: 200 VAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC-RGKKPQPDWSVVSQA 258
Query: 338 IKPLCDLLLCADPEIV 353
           +  L  L+   D E +
Sbjct: 259 LPTLAKLIYSMDTETL 274

>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422

Iteration: 1
 Score =  400 bits (1028), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 226/418 (54%), Positives = 287/418 (68%), Gaps = 11/418 (2%)
Query: 7   SDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQ-LQFEAAWALK 65
           SDD   QL AT   R++LS     P + VI  GVVPR VEF MRE+ P+ LQ EAAWAL 
Sbjct: 10  SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEMLQLEAAWALT 68
Query: 66  NIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEA 125
           NI SGTS  TKVV+D  AVP+F++LL + S +++EQA+ ALGNVA DS   RD VL   A
Sbjct: 69  NIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNA 128
Query: 126 LIPLLTQLNKHAKLSMLRIATWTLSNFCAG-KPKPIFDQVRPALPALAQLVHSNDKEVMT 184
           + P+L   N + K S++R ATWTLSN C G KP+P +  V  ALP LA+L++S D E + 
Sbjct: 129 MEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLV 187
Query: 185 DACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQ 244
           DAC A+ YLS+G  + IQAVI+  +  RLVELL H S  V T AL+ V NI  G+D QTQ
Sbjct: 188 DACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ 247
Query: 245 CIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQN 304
            +IN G LP  L LL+ + K++IK +ACWTISNITAGN+E IQAVIDA LI PLV LL+ 
Sbjct: 248 VVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEV 306
Query: 305 AEFDIKNWAARAISNATFGGTHEQ--IKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEK 362
           AE+  K  A  AISNA+ GG      I+YLV +GCIKPLCDLL  AD  I+ V L  LE 
Sbjct: 307 AEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALEN 366
Query: 363 ILKVGEAEKNMDIAIG-DVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYW 419
           ILK+GEA+K    A G ++N+ A  +E+A G+EKI N + ++ND+I+EK+ KI+ETY+
Sbjct: 367 ILKMGEADKE---ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 421

>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 87/186 (46%), Gaps = 4/186 (2%)
Query: 168 LPALAQLVHSND-KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLT 226
           LP + Q ++S+D +E ++   +    LS      I  VI+AGV PRLVE +    P +L 
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 60
Query: 227 -RALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEH 285
             A   + NIA+G   QT+ +++  A+P  + LL +     +K  A W + N+   ++++
Sbjct: 61  LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL-YTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 286 IQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLL 345
              V+    + P++ L  + +  +   A   +SN    G   Q  + V    +  L  L+
Sbjct: 120 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC-RGKKPQPDWSVVSQALPTLAKLI 178
Query: 346 LCADPE 351
              D E
Sbjct: 179 YSMDTE 184

>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422

Iteration: 1
 Score =  399 bits (1026), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 225/418 (53%), Positives = 287/418 (68%), Gaps = 11/418 (2%)
Query: 7   SDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQ-LQFEAAWALK 65
           SDD   QL AT   R++LS     P + VI  GVVPR VEF MRE+ P+ LQ EAAWAL 
Sbjct: 10  SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEMLQLEAAWALT 68
Query: 66  NIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEA 125
           NI SGTS  TKVV+D  AVP+F++LL + S +++EQA+ ALGNVA DS   RD VL   A
Sbjct: 69  NIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNA 128
Query: 126 LIPLLTQLNKHAKLSMLRIATWTLSNFCAG-KPKPIFDQVRPALPALAQLVHSNDKEVMT 184
           + P+L   N + K S++R ATWTLSN C G KP+P +  V  ALP LA+L++S D E + 
Sbjct: 129 MEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLV 187
Query: 185 DACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQ 244
           DAC A+ YLS+G  + IQAVI+  +  RLVELL H S  V T AL+ V NI  G+D QTQ
Sbjct: 188 DACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ 247
Query: 245 CIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQN 304
            +IN G LP  L LL+ + K++IK +ACWTISNITAGN+E IQAVIDA LI PLV LL+ 
Sbjct: 248 VVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEV 306
Query: 305 AEFDIKNWAARAISNATFGGTHEQ--IKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEK 362
           AE+  K  A  AISNA+ GG      I+YLV +GCIKPLCDLL  AD  I+ V L  LE 
Sbjct: 307 AEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALEN 366
Query: 363 ILKVGEAEKNMDIAIG-DVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYW 419
           I+K+GEA+K    A G ++N+ A  +E+A G+EKI N + ++ND+I+EK+ KI+ETY+
Sbjct: 367 IIKMGEADKE---ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 421

>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 87/186 (46%), Gaps = 4/186 (2%)
Query: 168 LPALAQLVHSND-KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLT 226
           LP + Q ++S+D +E ++   +    LS      I  VI+AGV PRLVE +    P +L 
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 60
Query: 227 -RALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEH 285
             A   + NIA+G   QT+ +++  A+P  + LL +     +K  A W + N+   ++++
Sbjct: 61  LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL-YTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 286 IQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLL 345
              V+    + P++ L  + +  +   A   +SN    G   Q  + V    +  L  L+
Sbjct: 120 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC-RGKKPQPDWSVVSQALPTLAKLI 178
Query: 346 LCADPE 351
              D E
Sbjct: 179 YSMDTE 184

>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423

Iteration: 1
 Score =  397 bits (1021), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 226/418 (54%), Positives = 286/418 (68%), Gaps = 11/418 (2%)
Query: 7   SDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQ-LQFEAAWALK 65
           SDD   QL AT   R++LS     P + VI  GVVPR VEF MRE+ P+ LQ EAAWAL 
Sbjct: 12  SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEMLQLEAAWALT 70
Query: 66  NIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEA 125
           NI SGTS  TKVV+D  AVP+F++LL + S +++EQA+ ALGNVA DS   RD VL   A
Sbjct: 71  NIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNA 130
Query: 126 LIPLLTQLNKHAKLSMLRIATWTLSNFCAG-KPKPIFDQVRPALPALAQLVHSNDKEVMT 184
           + P+L   N + K S++R ATWTLSN C G KP+P +  V  ALP LA+L++S D E + 
Sbjct: 131 MEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLV 189
Query: 185 DACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQ 244
           DAC A+ YLS+G  + IQAVI+  +  RLVELL H S  V T AL+ V NI  G+D QTQ
Sbjct: 190 DACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ 249
Query: 245 CIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQN 304
            +IN G LP  L LL+ + K++IK +ACWTISNITAGN+E IQAVIDA LI PLV LL+ 
Sbjct: 250 VVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEV 308
Query: 305 AEFDIKNWAARAISNATFGGTHEQ--IKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEK 362
           AE   K  A  AISNA+ GG      I+YLV +GCIKPLCDLL  AD  I+ V L  LE 
Sbjct: 309 AEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALEN 368
Query: 363 ILKVGEAEKNMDIAIG-DVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYW 419
           ILK+GEA+K    A G ++N+ A  +E+A G+EKI N + ++ND+I+EK+ KI+ETY+
Sbjct: 369 ILKMGEADKE---ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 423

>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 87/186 (46%), Gaps = 4/186 (2%)
Query: 168 LPALAQLVHSND-KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLT 226
           LP + Q ++S+D +E ++   +    LS      I  VI+AGV PRLVE +    P +L 
Sbjct: 3   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 62
Query: 227 -RALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEH 285
             A   + NIA+G   QT+ +++  A+P  + LL +     +K  A W + N+   ++++
Sbjct: 63  LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL-YTGSVEVKEQAIWALGNVAGDSTDY 121
Query: 286 IQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLL 345
              V+    + P++ L  + +  +   A   +SN    G   Q  + V    +  L  L+
Sbjct: 122 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC-RGKKPQPDWSVVSQALPTLAKLI 180
Query: 346 LCADPE 351
              D E
Sbjct: 181 YSMDTE 186

>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424

Iteration: 1
 Score =  397 bits (1021), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 226/418 (54%), Positives = 286/418 (68%), Gaps = 11/418 (2%)
Query: 7   SDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQ-LQFEAAWALK 65
           SDD   QL AT   R++LS     P + VI  GVVPR VEF MRE+ P+ LQ EAAWAL 
Sbjct: 12  SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEMLQLEAAWALT 70
Query: 66  NIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEA 125
           NI SGTS  TKVV+D  AVP+F++LL + S +++EQA+ ALGNVA DS   RD VL   A
Sbjct: 71  NIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNA 130
Query: 126 LIPLLTQLNKHAKLSMLRIATWTLSNFCAG-KPKPIFDQVRPALPALAQLVHSNDKEVMT 184
           + P+L   N + K S++R ATWTLSN C G KP+P +  V  ALP LA+L++S D E + 
Sbjct: 131 MEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLV 189
Query: 185 DACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQ 244
           DAC A+ YLS+G  + IQAVI+  +  RLVELL H S  V T AL+ V NI  G+D QTQ
Sbjct: 190 DACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ 249
Query: 245 CIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQN 304
            +IN G LP  L LL+ + K++IK +ACWTISNITAGN+E IQAVIDA LI PLV LL+ 
Sbjct: 250 VVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEV 308
Query: 305 AEFDIKNWAARAISNATFGGTHEQ--IKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEK 362
           AE   K  A  AISNA+ GG      I+YLV +GCIKPLCDLL  AD  I+ V L  LE 
Sbjct: 309 AEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALEN 368
Query: 363 ILKVGEAEKNMDIAIG-DVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYW 419
           ILK+GEA+K    A G ++N+ A  +E+A G+EKI N + ++ND+I+EK+ KI+ETY+
Sbjct: 369 ILKMGEADKE---ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 423

>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 87/186 (46%), Gaps = 4/186 (2%)
Query: 168 LPALAQLVHSND-KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLT 226
           LP + Q ++S+D +E ++   +    LS      I  VI+AGV PRLVE +    P +L 
Sbjct: 3   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 62
Query: 227 -RALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEH 285
             A   + NIA+G   QT+ +++  A+P  + LL +     +K  A W + N+   ++++
Sbjct: 63  LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL-YTGSVEVKEQAIWALGNVAGDSTDY 121
Query: 286 IQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLL 345
              V+    + P++ L  + +  +   A   +SN    G   Q  + V    +  L  L+
Sbjct: 122 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC-RGKKPQPDWSVVSQALPTLAKLI 180
Query: 346 LCADPE 351
              D E
Sbjct: 181 YSMDTE 186

>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443

Iteration: 1
 Score =  397 bits (1020), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 227/424 (53%), Positives = 288/424 (67%), Gaps = 11/424 (2%)
Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQ-LQFE 59
           M   + SDD   QL AT   R++LS     P + VI  GVVPR VEF MRE+ P+ LQ E
Sbjct: 5   MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEMLQLE 63
Query: 60  AAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDL 119
           AAWAL NI SGTS  TKVV+D  AVP+F++LL + S +++EQA+ ALGNVA DS   RD 
Sbjct: 64  AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY 123
Query: 120 VLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAG-KPKPIFDQVRPALPALAQLVHSN 178
           VL   A+ P+L   N + K S++R ATWTLSN C G KP+P +  V  ALP LA+L++S 
Sbjct: 124 VLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 182
Query: 179 DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG 238
           D E + DAC A+ YLS+G  + IQAVI+  +  RLVELL H S  V T AL+ V NI  G
Sbjct: 183 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG 242
Query: 239 DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPL 298
           +D QTQ +IN G LP  L LL+ + K++IK +ACWTISNITAGN+E IQAVIDA LI PL
Sbjct: 243 NDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPL 301
Query: 299 VNLLQNAEFDIKNWAARAISNATFGGTHEQ--IKYLVREGCIKPLCDLLLCADPEIVTVF 356
           V LL+ AE   K  A  AISNA+ GG      I+YLV +GCIKPLCDLL  AD  I+ V 
Sbjct: 302 VKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVT 361
Query: 357 LKGLEKILKVGEAEKNMDIAIG-DVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKIL 415
           L  LE ILK+GEA+K    A G ++N+ A  +E+A G+EKI N + ++ND+I+EK+ KI+
Sbjct: 362 LDALENILKMGEADKE---ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 418
Query: 416 ETYW 419
           ETY+
Sbjct: 419 ETYF 422

>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 87/186 (46%), Gaps = 4/186 (2%)
Query: 168 LPALAQLVHSND-KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLT 226
           LP + Q ++S+D +E ++   +    LS      I  VI+AGV PRLVE +    P +L 
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 61
Query: 227 -RALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEH 285
             A   + NIA+G   QT+ +++  A+P  + LL +     +K  A W + N+   ++++
Sbjct: 62  LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL-YTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 286 IQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLL 345
              V+    + P++ L  + +  +   A   +SN    G   Q  + V    +  L  L+
Sbjct: 121 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC-RGKKPQPDWSVVSQALPTLAKLI 179
Query: 346 LCADPE 351
              D E
Sbjct: 180 YSMDTE 185

>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454

Iteration: 1
 Score =  397 bits (1020), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 227/424 (53%), Positives = 288/424 (67%), Gaps = 11/424 (2%)
Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQ-LQFE 59
           M   + SDD   QL AT   R++LS     P + VI  GVVPR VEF MRE+ P+ LQ E
Sbjct: 5   MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEMLQLE 63
Query: 60  AAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDL 119
           AAWAL NI SGTS  TKVV+D  AVP+F++LL + S +++EQA+ ALGNVA DS   RD 
Sbjct: 64  AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY 123
Query: 120 VLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAG-KPKPIFDQVRPALPALAQLVHSN 178
           VL   A+ P+L   N + K S++R ATWTLSN C G KP+P +  V  ALP LA+L++S 
Sbjct: 124 VLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 182
Query: 179 DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG 238
           D E + DAC A+ YLS+G  + IQAVI+  +  RLVELL H S  V T AL+ V NI  G
Sbjct: 183 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG 242
Query: 239 DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPL 298
           +D QTQ +IN G LP  L LL+ + K++IK +ACWTISNITAGN+E IQAVIDA LI PL
Sbjct: 243 NDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPL 301
Query: 299 VNLLQNAEFDIKNWAARAISNATFGGTHEQ--IKYLVREGCIKPLCDLLLCADPEIVTVF 356
           V LL+ AE   K  A  AISNA+ GG      I+YLV +GCIKPLCDLL  AD  I+ V 
Sbjct: 302 VKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVT 361
Query: 357 LKGLEKILKVGEAEKNMDIAIG-DVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKIL 415
           L  LE ILK+GEA+K    A G ++N+ A  +E+A G+EKI N + ++ND+I+EK+ KI+
Sbjct: 362 LDALENILKMGEADKE---ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 418
Query: 416 ETYW 419
           ETY+
Sbjct: 419 ETYF 422

>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 88/188 (46%), Gaps = 4/188 (2%)
Query: 168 LPALAQLVHSND-KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLT 226
           LP + Q ++S+D +E ++   +    LS      I  VI+AGV PRLVE +    P +L 
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 61
Query: 227 -RALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEH 285
             A   + NIA+G   QT+ +++  A+P  + LL +     +K  A W + N+   ++++
Sbjct: 62  LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL-YTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 286 IQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLL 345
              V+    + P++ L  + +  +   A   +SN    G   Q  + V    +  L  L+
Sbjct: 121 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC-RGKKPQPDWSVVSQALPTLAKLI 179
Query: 346 LCADPEIV 353
              D E +
Sbjct: 180 YSMDTETL 187

>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427

Iteration: 1
 Score =  340 bits (872), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 187/424 (44%), Positives = 262/424 (61%), Gaps = 13/424 (3%)
Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
           +V G+ S++   QL+AT   RKLLS  +  P + +I  G++P+FV FL + D   +QFE+
Sbjct: 11  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 61  AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
           AWAL NI SGTSE TK V+D GA+P F+ LLASP   I EQAV ALGN+A D +  RDLV
Sbjct: 71  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 121 LSEEALIPLLTQLN----KHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLV 175
           +   A+ PLL  L            LR  TWTLSN C  K P P  D V   LP L +L+
Sbjct: 131 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 190
Query: 176 HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
           H ND EV+ D+C A+ YL++G N+ I+ V++ GV P+LV+LLG     ++T AL+ + NI
Sbjct: 191 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 250
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLI 295
             G D QTQ +I+ GAL     LL  N K +I+ +A WT+SNITAG  + IQ V++ GL+
Sbjct: 251 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 309
Query: 296 GPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTV 355
             LV +L  A+F  +  AA AI+N T GGT EQI YLV  G I+PL +LL   D +I+ V
Sbjct: 310 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 369
Query: 356 FLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKIL 415
            L  +  I +  E        +G+  + + ++EE  GL+KIE L+ H+N+ +++ S+ ++
Sbjct: 370 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 422
Query: 416 ETYW 419
           E Y+
Sbjct: 423 EKYF 426

>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510

Iteration: 1
 Score =  340 bits (872), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 187/425 (44%), Positives = 262/425 (61%), Gaps = 13/425 (3%)
Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
           +V G+ S++   QL+AT   RKLLS  +  P + +I  G++P+FV FL + D   +QFE+
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 61  AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
           AWAL NI SGTSE TK V+D GA+P F+ LLASP   I EQAV ALGN+A D +  RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 121 LSEEALIPLLTQLN----KHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLV 175
           +   A+ PLL  L            LR  TWTLSN C  K P P  D V   LP L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 176 HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
           H ND EV+ D+C A+ YL++G N+ I+ V++ GV P+LV+LLG     ++T AL+ + NI
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLI 295
             G D QTQ +I+ GAL     LL  N K +I+ +A WT+SNITAG  + IQ V++ GL+
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 360
Query: 296 GPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTV 355
             LV +L  A+F  +  AA AI+N T GGT EQI YLV  G I+PL +LL   D +I+ V
Sbjct: 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420
Query: 356 FLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKIL 415
            L  +  I +  E        +G+  + + ++EE  GL+KIE L+ H+N+ +++ S+ ++
Sbjct: 421 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473
Query: 416 ETYWC 420
           E Y+ 
Sbjct: 474 EKYFS 478

>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466

Iteration: 1
 Score =  340 bits (872), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 187/424 (44%), Positives = 262/424 (61%), Gaps = 13/424 (3%)
Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
           +V G+ S++   QL+AT   RKLLS  +  P + +I  G++P+FV FL + D   +QFE+
Sbjct: 18  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 77
Query: 61  AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
           AWAL NI SGTSE TK V+D GA+P F+ LLASP   I EQAV ALGN+A D +  RDLV
Sbjct: 78  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 137
Query: 121 LSEEALIPLLTQLN----KHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLV 175
           +   A+ PLL  L            LR  TWTLSN C  K P P  D V   LP L +L+
Sbjct: 138 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 197
Query: 176 HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
           H ND EV+ D+C A+ YL++G N+ I+ V++ GV P+LV+LLG     ++T AL+ + NI
Sbjct: 198 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 257
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLI 295
             G D QTQ +I+ GAL     LL  N K +I+ +A WT+SNITAG  + IQ V++ GL+
Sbjct: 258 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 316
Query: 296 GPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTV 355
             LV +L  A+F  +  AA AI+N T GGT EQI YLV  G I+PL +LL   D +I+ V
Sbjct: 317 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 376
Query: 356 FLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKIL 415
            L  +  I +  E        +G+  + + ++EE  GL+KIE L+ H+N+ +++ S+ ++
Sbjct: 377 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 429
Query: 416 ETYW 419
           E Y+
Sbjct: 430 EKYF 433

>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509

Iteration: 1
 Score =  340 bits (872), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 187/425 (44%), Positives = 262/425 (61%), Gaps = 13/425 (3%)
Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
           +V G+ S++   QL+AT   RKLLS  +  P + +I  G++P+FV FL + D   +QFE+
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 61  AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
           AWAL NI SGTSE TK V+D GA+P F+ LLASP   I EQAV ALGN+A D +  RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 121 LSEEALIPLLTQLN----KHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLV 175
           +   A+ PLL  L            LR  TWTLSN C  K P P  D V   LP L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 176 HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
           H ND EV+ D+C A+ YL++G N+ I+ V++ GV P+LV+LLG     ++T AL+ + NI
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLI 295
             G D QTQ +I+ GAL     LL  N K +I+ +A WT+SNITAG  + IQ V++ GL+
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 360
Query: 296 GPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTV 355
             LV +L  A+F  +  AA AI+N T GGT EQI YLV  G I+PL +LL   D +I+ V
Sbjct: 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420
Query: 356 FLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKIL 415
            L  +  I +  E        +G+  + + ++EE  GL+KIE L+ H+N+ +++ S+ ++
Sbjct: 421 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473
Query: 416 ETYWC 420
           E Y+ 
Sbjct: 474 EKYFS 478

>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510

Iteration: 1
 Score =  340 bits (872), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 187/425 (44%), Positives = 262/425 (61%), Gaps = 13/425 (3%)
Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
           +V G+ S++   QL+AT   RKLLS  +  P + +I  G++P+FV FL + D   +QFE+
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 61  AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
           AWAL NI SGTSE TK V+D GA+P F+ LLASP   I EQAV ALGN+A D +  RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 121 LSEEALIPLLTQLN----KHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLV 175
           +   A+ PLL  L            LR  TWTLSN C  K P P  D V   LP L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 176 HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
           H ND EV+ D+C A+ YL++G N+ I+ V++ GV P+LV+LLG     ++T AL+ + NI
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLI 295
             G D QTQ +I+ GAL     LL  N K +I+ +A WT+SNITAG  + IQ V++ GL+
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 360
Query: 296 GPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTV 355
             LV +L  A+F  +  AA AI+N T GGT EQI YLV  G I+PL +LL   D +I+ V
Sbjct: 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420
Query: 356 FLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKIL 415
            L  +  I +  E        +G+  + + ++EE  GL+KIE L+ H+N+ +++ S+ ++
Sbjct: 421 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473
Query: 416 ETYWC 420
           E Y+ 
Sbjct: 474 EKYFS 478

>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496

Iteration: 1
 Score =  340 bits (871), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 187/425 (44%), Positives = 262/425 (61%), Gaps = 13/425 (3%)
Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
           +V G+ S++   QL+AT   RKLLS  +  P + +I  G++P+FV FL + D   +QFE+
Sbjct: 48  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 107
Query: 61  AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
           AWAL NI SGTSE TK V+D GA+P F+ LLASP   I EQAV ALGN+A D +  RDLV
Sbjct: 108 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 167
Query: 121 LSEEALIPLLTQLN----KHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLV 175
           +   A+ PLL  L            LR  TWTLSN C  K P P  D V   LP L +L+
Sbjct: 168 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 227
Query: 176 HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
           H ND EV+ D+C A+ YL++G N+ I+ V++ GV P+LV+LLG     ++T AL+ + NI
Sbjct: 228 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 287
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLI 295
             G D QTQ +I+ GAL     LL  N K +I+ +A WT+SNITAG  + IQ V++ GL+
Sbjct: 288 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 346
Query: 296 GPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTV 355
             LV +L  A+F  +  AA AI+N T GGT EQI YLV  G I+PL +LL   D +I+ V
Sbjct: 347 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 406
Query: 356 FLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKIL 415
            L  +  I +  E        +G+  + + ++EE  GL+KIE L+ H+N+ +++ S+ ++
Sbjct: 407 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 459
Query: 416 ETYWC 420
           E Y+ 
Sbjct: 460 EKYFS 464

>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461

Iteration: 1
 Score =  340 bits (871), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 187/424 (44%), Positives = 262/424 (61%), Gaps = 13/424 (3%)
Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
           +V G+ S++   QL+AT   RKLLS  +  P + +I  G++P+FV FL + D   +QFE+
Sbjct: 46  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 105
Query: 61  AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
           AWAL NI SGTSE TK V+D GA+P F+ LLASP   I EQAV ALGN+A D +  RDLV
Sbjct: 106 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 165
Query: 121 LSEEALIPLLTQLN----KHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLV 175
           +   A+ PLL  L            LR  TWTLSN C  K P P  D V   LP L +L+
Sbjct: 166 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 225
Query: 176 HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
           H ND EV+ D+C A+ YL++G N+ I+ V++ GV P+LV+LLG     ++T AL+ + NI
Sbjct: 226 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 285
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLI 295
             G D QTQ +I+ GAL     LL  N K +I+ +A WT+SNITAG  + IQ V++ GL+
Sbjct: 286 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 344
Query: 296 GPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTV 355
             LV +L  A+F  +  AA AI+N T GGT EQI YLV  G I+PL +LL   D +I+ V
Sbjct: 345 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 404
Query: 356 FLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKIL 415
            L  +  I +  E        +G+  + + ++EE  GL+KIE L+ H+N+ +++ S+ ++
Sbjct: 405 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 457
Query: 416 ETYW 419
           E Y+
Sbjct: 458 EKYF 461

>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428

Iteration: 1
 Score =  340 bits (871), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 187/424 (44%), Positives = 262/424 (61%), Gaps = 13/424 (3%)
Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
           +V G+ S++   QL+AT   RKLLS  +  P + +I  G++P+FV FL + D   +QFE+
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 61  AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
           AWAL NI SGTSE TK V+D GA+P F+ LLASP   I EQAV ALGN+A D +  RDLV
Sbjct: 72  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 121 LSEEALIPLLTQLN----KHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLV 175
           +   A+ PLL  L            LR  TWTLSN C  K P P  D V   LP L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 176 HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
           H ND EV+ D+C A+ YL++G N+ I+ V++ GV P+LV+LLG     ++T AL+ + NI
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLI 295
             G D QTQ +I+ GAL     LL  N K +I+ +A WT+SNITAG  + IQ V++ GL+
Sbjct: 252 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 310
Query: 296 GPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTV 355
             LV +L  A+F  +  AA AI+N T GGT EQI YLV  G I+PL +LL   D +I+ V
Sbjct: 311 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 370
Query: 356 FLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKIL 415
            L  +  I +  E        +G+  + + ++EE  GL+KIE L+ H+N+ +++ S+ ++
Sbjct: 371 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 423
Query: 416 ETYW 419
           E Y+
Sbjct: 424 EKYF 427

>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426

Iteration: 1
 Score =  340 bits (871), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 187/424 (44%), Positives = 262/424 (61%), Gaps = 13/424 (3%)
Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
           +V G+ S++   QL+AT   RKLLS  +  P + +I  G++P+FV FL + D   +QFE+
Sbjct: 11  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 61  AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
           AWAL NI SGTSE TK V+D GA+P F+ LLASP   I EQAV ALGN+A D +  RDLV
Sbjct: 71  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 121 LSEEALIPLLTQLN----KHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLV 175
           +   A+ PLL  L            LR  TWTLSN C  K P P  D V   LP L +L+
Sbjct: 131 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 190
Query: 176 HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
           H ND EV+ D+C A+ YL++G N+ I+ V++ GV P+LV+LLG     ++T AL+ + NI
Sbjct: 191 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 250
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLI 295
             G D QTQ +I+ GAL     LL  N K +I+ +A WT+SNITAG  + IQ V++ GL+
Sbjct: 251 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 309
Query: 296 GPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTV 355
             LV +L  A+F  +  AA AI+N T GGT EQI YLV  G I+PL +LL   D +I+ V
Sbjct: 310 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 369
Query: 356 FLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKIL 415
            L  +  I +  E        +G+  + + ++EE  GL+KIE L+ H+N+ +++ S+ ++
Sbjct: 370 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 422
Query: 416 ETYW 419
           E Y+
Sbjct: 423 EKYF 426

>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427

Iteration: 1
 Score =  339 bits (870), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 187/424 (44%), Positives = 262/424 (61%), Gaps = 13/424 (3%)
Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
           +V G+ S++   QL+AT   RKLLS  +  P + +I  G++P+FV FL + D   +QFE+
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 61  AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
           AWAL NI SGTSE TK V+D GA+P F+ LLASP   I EQAV ALGN+A D +  RDLV
Sbjct: 72  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 121 LSEEALIPLLTQLN----KHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLV 175
           +   A+ PLL  L            LR  TWTLSN C  K P P  D V   LP L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 176 HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
           H ND EV+ D+C A+ YL++G N+ I+ V++ GV P+LV+LLG     ++T AL+ + NI
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLI 295
             G D QTQ +I+ GAL     LL  N K +I+ +A WT+SNITAG  + IQ V++ GL+
Sbjct: 252 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 310
Query: 296 GPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTV 355
             LV +L  A+F  +  AA AI+N T GGT EQI YLV  G I+PL +LL   D +I+ V
Sbjct: 311 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 370
Query: 356 FLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKIL 415
            L  +  I +  E        +G+  + + ++EE  GL+KIE L+ H+N+ +++ S+ ++
Sbjct: 371 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 423
Query: 416 ETYW 419
           E Y+
Sbjct: 424 EKYF 427

>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422

Iteration: 1
 Score =  339 bits (870), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 187/424 (44%), Positives = 262/424 (61%), Gaps = 13/424 (3%)
Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
           +V G+ S++   QL+AT   RKLLS  +  P + +I  G++P+FV FL + D   +QFE+
Sbjct: 7   IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 61  AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
           AWAL NI SGTSE TK V+D GA+P F+ LLASP   I EQAV ALGN+A D +  RDLV
Sbjct: 67  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 121 LSEEALIPLLTQLN----KHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLV 175
           +   A+ PLL  L            LR  TWTLSN C  K P P  D V   LP L +L+
Sbjct: 127 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 186
Query: 176 HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
           H ND EV+ D+C A+ YL++G N+ I+ V++ GV P+LV+LLG     ++T AL+ + NI
Sbjct: 187 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 246
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLI 295
             G D QTQ +I+ GAL     LL  N K +I+ +A WT+SNITAG  + IQ V++ GL+
Sbjct: 247 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 305
Query: 296 GPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTV 355
             LV +L  A+F  +  AA AI+N T GGT EQI YLV  G I+PL +LL   D +I+ V
Sbjct: 306 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 365
Query: 356 FLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKIL 415
            L  +  I +  E        +G+  + + ++EE  GL+KIE L+ H+N+ +++ S+ ++
Sbjct: 366 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 418
Query: 416 ETYW 419
           E Y+
Sbjct: 419 EKYF 422

>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424

Iteration: 1
 Score =  339 bits (870), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 187/424 (44%), Positives = 262/424 (61%), Gaps = 13/424 (3%)
Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
           +V G+ S++   QL+AT   RKLLS  +  P + +I  G++P+FV FL + D   +QFE+
Sbjct: 7   IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 61  AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
           AWAL NI SGTSE TK V+D GA+P F+ LLASP   I EQAV ALGN+A D +  RDLV
Sbjct: 67  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 121 LSEEALIPLLTQLN----KHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLV 175
           +   A+ PLL  L            LR  TWTLSN C  K P P  D V   LP L +L+
Sbjct: 127 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 186
Query: 176 HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
           H ND EV+ D+C A+ YL++G N+ I+ V++ GV P+LV+LLG     ++T AL+ + NI
Sbjct: 187 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 246
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLI 295
             G D QTQ +I+ GAL     LL  N K +I+ +A WT+SNITAG  + IQ V++ GL+
Sbjct: 247 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 305
Query: 296 GPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTV 355
             LV +L  A+F  +  AA AI+N T GGT EQI YLV  G I+PL +LL   D +I+ V
Sbjct: 306 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 365
Query: 356 FLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKIL 415
            L  +  I +  E        +G+  + + ++EE  GL+KIE L+ H+N+ +++ S+ ++
Sbjct: 366 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 418
Query: 416 ETYW 419
           E Y+
Sbjct: 419 EKYF 422

>pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453

Iteration: 1
 Score =  339 bits (869), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 187/424 (44%), Positives = 262/424 (61%), Gaps = 13/424 (3%)
Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
           +V G+ S++   QL+AT   RKLLS  +  P + +I  G++P+FV FL + D   +QFE+
Sbjct: 38  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 97
Query: 61  AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
           AWAL NI SGTSE TK V+D GA+P F+ LLASP   I EQAV ALGN+A D +  RDLV
Sbjct: 98  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 157
Query: 121 LSEEALIPLLTQLN----KHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLV 175
           +   A+ PLL  L            LR  TWTLSN C  K P P  D V   LP L +L+
Sbjct: 158 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 217
Query: 176 HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
           H ND EV+ D+C A+ YL++G N+ I+ V++ GV P+LV+LLG     ++T AL+ + NI
Sbjct: 218 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 277
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLI 295
             G D QTQ +I+ GAL     LL  N K +I+ +A WT+SNITAG  + IQ V++ GL+
Sbjct: 278 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 336
Query: 296 GPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTV 355
             LV +L  A+F  +  AA AI+N T GGT EQI YLV  G I+PL +LL   D +I+ V
Sbjct: 337 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 396
Query: 356 FLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKIL 415
            L  +  I +  E        +G+  + + ++EE  GL+KIE L+ H+N+ +++ S+ ++
Sbjct: 397 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 449
Query: 416 ETYW 419
           E Y+
Sbjct: 450 EKYF 453

>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460

Iteration: 1
 Score =  339 bits (869), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 187/424 (44%), Positives = 262/424 (61%), Gaps = 13/424 (3%)
Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
           +V G+ S++   QL+AT   RKLLS  +  P + +I  G++P+FV FL + D   +QFE+
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 61  AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
           AWAL NI SGTSE TK V+D GA+P F+ LLASP   I EQAV ALGN+A D +  RDLV
Sbjct: 72  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 121 LSEEALIPLLTQLN----KHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLV 175
           +   A+ PLL  L            LR  TWTLSN C  K P P  D V   LP L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 176 HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
           H ND EV+ D+C A+ YL++G N+ I+ V++ GV P+LV+LLG     ++T AL+ + NI
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLI 295
             G D QTQ +I+ GAL     LL  N K +I+ +A WT+SNITAG  + IQ V++ GL+
Sbjct: 252 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 310
Query: 296 GPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTV 355
             LV +L  A+F  +  AA AI+N T GGT EQI YLV  G I+PL +LL   D +I+ V
Sbjct: 311 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 370
Query: 356 FLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKIL 415
            L  +  I +  E        +G+  + + ++EE  GL+KIE L+ H+N+ +++ S+ ++
Sbjct: 371 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 423
Query: 416 ETYW 419
           E Y+
Sbjct: 424 EKYF 427

>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529

Iteration: 1
 Score =  337 bits (865), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 186/425 (43%), Positives = 261/425 (61%), Gaps = 13/425 (3%)
Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
           +V G+ S++   QL+AT   RKLLS  +  P + +I  G++P+FV FL + D   +QFE+
Sbjct: 81  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 140
Query: 61  AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
           AWAL NI SGTSE TK V+D GA+P F+ LLASP   I EQAV ALGN+A   +  RDLV
Sbjct: 141 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLV 200
Query: 121 LSEEALIPLLTQLN----KHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLV 175
           +   A+ PLL  L            LR  TWTLSN C  K P P  D V   LP L +L+
Sbjct: 201 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 260
Query: 176 HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
           H ND EV+ D+C A+ YL++G N+ I+ V++ GV P+LV+LLG     ++T AL+ + NI
Sbjct: 261 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 320
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLI 295
             G D QTQ +I+ GAL     LL  N K +I+ +A WT+SNITAG  + IQ V++ GL+
Sbjct: 321 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 379
Query: 296 GPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTV 355
             LV +L  A+F  +  AA AI+N T GGT EQI YLV  G I+PL +LL   D +I+ V
Sbjct: 380 PFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 439
Query: 356 FLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKIL 415
            L  +  I +  E        +G+  + + ++EE  GL+KIE L+ H+N+ +++ S+ ++
Sbjct: 440 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 492
Query: 416 ETYWC 420
           E Y+ 
Sbjct: 493 EKYFS 497

>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467

Iteration: 1
 Score =  337 bits (864), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 186/424 (43%), Positives = 262/424 (61%), Gaps = 13/424 (3%)
Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
           +V G+ S +   QL+AT   RKLLS  +  P + +I  G++P+FV FL R D   +QFE+
Sbjct: 13  IVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFES 72
Query: 61  AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
           AWAL NI SGTSE TK V+D GA+P F+ LLASP   I EQAV ALGN+A D +  RDLV
Sbjct: 73  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLV 132
Query: 121 LSEEALIPLLTQLNKHAKLSM----LRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLV 175
           +   A+ PLL  L      S+    LR  TWTLSN C  K P P  D V   LP L +L+
Sbjct: 133 IKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLL 192
Query: 176 HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
           H +D EV+ D C A+ YL++G N+ I  V++ GV P+LV+LLG     ++T AL+ + NI
Sbjct: 193 HHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNI 252
Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLI 295
             G D QTQ +I+ GAL     LL  N K +I+ +A WT+SNITAG  + IQ V++ GL+
Sbjct: 253 VTGTDEQTQVVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 311
Query: 296 GPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTV 355
             LV++L  A+F  +  A  A++N T GGT EQI YLV  G I+PL +LL   D +I+ V
Sbjct: 312 PFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILV 371
Query: 356 FLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKIL 415
            L  +  I +  E        +G+  + + ++EE  GL+KIE L++H+N+ +++ S+ ++
Sbjct: 372 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQNHENESVYKASLSLI 424
Query: 416 ETYW 419
           E Y+
Sbjct: 425 EKYF 428

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 93/249 (37%), Positives = 139/249 (55%), Gaps = 15/249 (6%)
Query: 168 LPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTR 227
           LP + Q ++S+D +    A R    +    N++IQAVI+AG  P LV+LL  P+  +L  
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 228 ALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQ 287
           AL  + NIA+G + Q Q +I+ GALP L+ LL  +  + I  +A W +SNI +G +E IQ
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 288 AVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC 347
           AVIDAG +  LV LL +    I   A  A+SN   GG +EQI+ ++  G +  L  LL  
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSS 191
Query: 348 ADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEI 407
            + +I+   L  L  I   G             N+  Q V+EA  LEK+E L+SH+N++I
Sbjct: 192 PNEQILQEALWALSNIASGG-------------NEQKQAVKEAGALEKLEQLQSHENEKI 238
Query: 408 HEKSVKILE 416
            +++ + LE
Sbjct: 239 QKEAQEALE 247

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score =  127 bits (319), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/197 (39%), Positives = 114/197 (57%), Gaps = 4/197 (2%)
Query: 168 LPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTR 227
           LP + Q ++S D++ +  A R L  ++ G N++IQAVI+AG  P LV+LL  P+  +L  
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 228 ALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQ 287
           AL  + NIA+G + Q Q +I+ GALP L+ LL   +++ I  +A W +SNI +G +E IQ
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQIQ 132
Query: 288 AVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC 347
           AVIDAG +  LV LL +    I   A  A+SN   GG  +  K  V+E   +P  + L  
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--KQAVKEAGAEPALEQLQS 190
Query: 348 ADPE-IVTVFLKGLEKI 363
           +  E I     + LEKI
Sbjct: 191 SPNEKIQKEAQEALEKI 207

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score =  125 bits (314), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 76/196 (38%), Positives = 115/196 (58%), Gaps = 2/196 (1%)
Query: 168 LPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTR 227
           LP + Q ++S D++ +  A R L  ++ G N++IQAVI+AG  P LV+LL  P+  +L  
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 228 ALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQ 287
           AL  + NIA+G + Q Q +I+ GALP L+ LL   +++ I  +A W +SNI +G +E IQ
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQIQ 132
Query: 288 AVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC 347
           AVIDAG +  LV LL +    I   A  A+SN   GG +EQ + +   G ++ L  L   
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQSH 191
Query: 348 ADPEIVTVFLKGLEKI 363
            + +I     + LEK+
Sbjct: 192 ENEKIQKEAQEALEKL 207

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score =  114 bits (286), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 75/207 (36%), Positives = 114/207 (55%), Gaps = 15/207 (7%)
Query: 210 CPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKT 269
            P++V+ L  P    L  AL+ +  IA+G + Q Q +I+ GALP L+ LL   +++ I  
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQ 72
Query: 270 DACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQI 329
           +A W +SNI +G +E IQAVIDAG +  LV LL +    I   A  A+SN   GG +EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 330 KYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEE 389
           + ++  G +  L  LL   + +I+   L  L  I   G             N+  Q V+E
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-------------NEQKQAVKE 178
Query: 390 AEGLEKIENLRSHDNDEIHEKSVKILE 416
           A  LEK+E L+SH+N++I +++ + LE
Sbjct: 179 AGALEKLEQLQSHENEKIQKEAQEALE 205

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score =  118 bits (296), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 74/196 (37%), Positives = 111/196 (56%), Gaps = 2/196 (1%)
Query: 168 LPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTR 227
           LP + Q ++S+D +    A R    +    N++IQAVI+AG  P LV+LL  P+  +L  
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 228 ALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQ 287
           AL  + NIA+G + Q Q +I+ GALP L+ LL   +++ I  +A W +SNI +G +E IQ
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQIQ 132
Query: 288 AVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC 347
           AVIDAG +  LV LL +    I   A  A+SN   GG +EQ + +   G ++ L  L   
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQSH 191
Query: 348 ADPEIVTVFLKGLEKI 363
            + +I     + LEK+
Sbjct: 192 ENEKIQKEAQEALEKL 207

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 107/207 (51%), Gaps = 15/207 (7%)
Query: 210 CPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKT 269
            P++ + L          A +    I +  + Q Q +I+ GALP L+ LL   +++ I  
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQ 72
Query: 270 DACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQI 329
           +A W +SNI +G +E IQAVIDAG +  LV LL +    I   A  A+SN   GG +EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 330 KYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEE 389
           + ++  G +  L  LL   + +I+   L  L  I   G             N+  Q V+E
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-------------NEQKQAVKE 178
Query: 390 AEGLEKIENLRSHDNDEIHEKSVKILE 416
           A  LEK+E L+SH+N++I +++ + LE
Sbjct: 179 AGALEKLEQLQSHENEKIQKEAQEALE 205

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score =  108 bits (270), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 125/244 (51%), Gaps = 13/244 (5%)
Query: 124 EALIPLLT----QLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSND 179
           E L+ LLT    +  K A   +  IA+   S       K I D     +  L +L+ S D
Sbjct: 5   EKLVKLLTSTDSETQKEAARDLAEIASGPASAI-----KAIVDA--GGVEVLVKLLTSTD 57
Query: 180 KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGD 239
            EV  +A RAL  ++ G ++ I+A+++AG    LV+LL      V   A + + NIA+G 
Sbjct: 58  SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 117
Query: 240 DFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLV 299
           D   + I++ G +  L+ LL     + ++ +A   ++NI +G  E I+A++DAG +  LV
Sbjct: 118 DEAIKAIVDAGGVEVLVKLLTSTDSE-VQKEAARALANIASGPDEAIKAIVDAGGVEVLV 176
Query: 300 NLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKG 359
            LL + + +++  AARA++N   G T   IK +V  G ++ L  LL   D E+     + 
Sbjct: 177 KLLTSTDSEVQKEAARALANIASGPTS-AIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRA 235
Query: 360 LEKI 363
           LE I
Sbjct: 236 LENI 239

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	447
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-165
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-41
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-157
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-58
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	6e-46
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-154
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	9e-39
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	9e-35
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	3e-31
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	6e-10
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-92
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-62
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-60
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-58
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-52
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	6e-47
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-34
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-24
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-90
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-68
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	7e-62
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-56
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-53
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	8e-30
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	5e-79
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-74
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	8e-53
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-50
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	8e-09
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	1e-72
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-56
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	4e-48
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	5e-11
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-64
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	5e-54
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	6e-63
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-50
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	9e-30
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-22
3nmz_A	458	APC variant protein; protein-protein complex, arma	3e-52
3nmz_A	458	APC variant protein; protein-protein complex, arma	3e-45
3nmz_A	458	APC variant protein; protein-protein complex, arma	3e-44
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-50
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-26
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-17
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-13
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	6e-49
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-23
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	5e-08
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-38
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-32
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	8e-17
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-36
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-32
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	9e-30
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	4e-17
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-05
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	4e-30
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	3e-18
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	1e-16
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	8e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-12
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	1e-09
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	1e-08
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	6e-05
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	2e-09
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	5e-05
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	1e-04
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	2e-08
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	6e-08
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	5e-04
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	2e-08
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	8e-07
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	6e-08
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	2e-07
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	2e-07
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	1e-07
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	2e-07
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	5e-04
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	4e-07
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	4e-05
1qgr_A	876	Protein (importin beta subunit); transport recepto	2e-06
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	4e-06
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	5e-06
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	7e-06
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	2e-05
3grl_A	651	General vesicular transport factor P115; vesicle t	2e-04

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  470 bits (1212), Expect = e-165
 Identities = 227/421 (53%), Positives = 285/421 (67%), Gaps = 5/421 (1%)

Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIP-FGVVPRFVEFLMREDYPQLQFE 59
           M+  ++S     QL AT   RKLLS   + P +EVI   GVV RFVEFL R++   LQFE
Sbjct: 25  MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 84

Query: 60  AAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDL 119
           +AW L NI SG S  T++VI  GAVPIF++LL+S  +D++EQAV ALGN+A DS  CRD 
Sbjct: 85  SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144

Query: 120 VLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLVHSN 178
           VL    L PLL   +K  +L+M R A W LSN C GK P P F +V P L  L+ L+  +
Sbjct: 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 204

Query: 179 DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG 238
           D +V+ DAC AL YLS+G ND+IQAVI+AGVC RLVELL H    V++ AL+ V NI  G
Sbjct: 205 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264

Query: 239 DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPL 298
           DD QTQ I+NC AL  LL LL  + K+SIK +ACWTISNITAGN   IQ VIDA +   L
Sbjct: 265 DDIQTQVILNCSALQSLLHLL-SSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 323

Query: 299 VNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLK 358
           +++LQ AEF  +  AA AI+NAT GG+ EQIKYLV  GCIKPLCDLL   D +IV V L 
Sbjct: 324 ISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALN 383

Query: 359 GLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETY 418
           GLE IL++GE E   +     +N Y  L+EEA GL+KIE L+SH+N EI++K+  ++E Y
Sbjct: 384 GLENILRLGEQEAKRN--GTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHY 441

Query: 419 W 419
           +
Sbjct: 442 F 442

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  151 bits (384), Expect = 2e-41
 Identities = 59/347 (17%), Positives = 132/347 (38%), Gaps = 57/347 (16%)

Query: 72  SEDTKVVI--DHGAVPIFVKLLASPSDDIREQAVCALGNVAADSA-RCRDLVLSEEALIP 128
           ++   + +          ++++ S S + +  A      + +       D V+S   ++ 
Sbjct: 8   AQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVA 67

Query: 129 LLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACR 188
              +                                         L    +  +  ++  
Sbjct: 68  RFVEF----------------------------------------LKRKENCTLQFESAW 87

Query: 189 ALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIIN 248
            L  ++ G + + + VI+AG  P  +ELL      V  +A+  + NIA         +++
Sbjct: 88  VLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLD 147

Query: 249 CGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFD 308
           C  LP LL L    ++ ++  +A W +SN+  G S   +    +  +  L  LL  ++ D
Sbjct: 148 CNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTD 207

Query: 309 IKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGE 368
           +   A  A+S  +  G +++I+ ++  G  + L +LL+  D ++V+  L+ +        
Sbjct: 208 VLADACWALSYLSD-GPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVG------- 259

Query: 369 AEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKIL 415
                +I  GD  Q  Q++     L+ + +L S   + I +++   +
Sbjct: 260 -----NIVTGDDIQ-TQVILNCSALQSLLHLLSSPKESIKKEACWTI 300

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  453 bits (1167), Expect = e-157
 Identities = 221/422 (52%), Positives = 280/422 (66%), Gaps = 7/422 (1%)

Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
           M   + SDD   QL AT   R++LS     P + VI  GVVPR VEF+       LQ EA
Sbjct: 92  MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEA 151

Query: 61  AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
           AWAL NI SGTS  TKVV+D  AVP+F++LL + S +++EQA+ ALGNVA DS   RD V
Sbjct: 152 AWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYV 211

Query: 121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLVHSND 179
           L   A+ P+L   N   K S++R ATWTLSN C GK P+P +  V  ALP LA+L++S D
Sbjct: 212 LQCNAMEPILGLFN-SNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMD 270

Query: 180 KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGD 239
            E + DAC A+ YLS+G  + IQAVI+  +  RLVELL H S  V T AL+ V NI  G+
Sbjct: 271 TETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGN 330

Query: 240 DFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLV 299
           D QTQ +IN G LP L  LL    K++IK +ACWTISNITAGN+E IQAVIDA LI PLV
Sbjct: 331 DLQTQVVINAGVLPALRLLLSS-PKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLV 389

Query: 300 NLLQNAEFDIKNWAARAISNATFGGTH--EQIKYLVREGCIKPLCDLLLCADPEIVTVFL 357
            LL+ AE+  K  A  AISNA+ GG    + I+YLV +GCIKPLCDLL  AD  I+ V L
Sbjct: 390 KLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTL 449

Query: 358 KGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILET 417
             LE ILK+GEA+K       ++N+ A  +E+A G+EKI N + ++ND+I+EK+ KI+ET
Sbjct: 450 DALENILKMGEADKEARGL--NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIET 507

Query: 418 YW 419
           Y+
Sbjct: 508 YF 509

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  199 bits (508), Expect = 1e-58
 Identities = 98/393 (24%), Positives = 166/393 (42%), Gaps = 19/393 (4%)

Query: 7   SDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKN 66
           +    +QLEA   +  + S   SA T+ V+    VP F++ L+     +++ +A WAL N
Sbjct: 142 NQPEMLQLEAAWALTNIAS-GTSAQTKVVVDADAVPLFIQ-LLYTGSVEVKEQAIWALGN 199

Query: 67  IVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEAL 126
           +   +++    V+   A+   + L  S    +   A   L N+        D  +  +AL
Sbjct: 200 VAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQAL 259

Query: 127 IPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRP-ALPALAQLVHSNDKEVMTD 185
            P L +L        L  A W +S    G  + I   +       L +L+      V T 
Sbjct: 260 -PTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTP 318

Query: 186 ACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQC 245
           A RA+  +  G + + Q VI AGV P L  LL  P  ++   A  T+ NI AG+  Q Q 
Sbjct: 319 ALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQA 378

Query: 246 IINCGALPYLLGLLIHNHKKSIKTDACWTISNITAG---NSEHIQAVIDAGLIGPLVNLL 302
           +I+   +P L+ LL     K  K +ACW ISN ++G     + I+ ++  G I PL +LL
Sbjct: 379 VIDANLIPPLVKLLEVAEYK-TKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLL 437

Query: 303 QNAEFDIKNWAARAISN----------ATFGGTHEQIKYLVREGCIKPLCDLLLCADPEI 352
           + A+  I      A+ N          A     +E   ++ + G ++ + +     + +I
Sbjct: 438 EIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKI 497

Query: 353 VTVFLKGLEKILKVGEAEKNMDIAIGDV-NQYA 384
                K +E      E   +  +A  +  N + 
Sbjct: 498 YEKAYKIIETYFGEEEDAVDETMAPQNAGNTFG 530

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  165 bits (420), Expect = 6e-46
 Identities = 74/364 (20%), Positives = 134/364 (36%), Gaps = 17/364 (4%)

Query: 54  PQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAA-D 112
                 A    ++  S +++          +P   + L S     +  A      + + +
Sbjct: 59  IPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSRE 118

Query: 113 SARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQV-RPALPAL 171
                D+V+    +  L+  + ++    +   A W L+N  +G        V   A+P  
Sbjct: 119 HRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLF 178

Query: 172 AQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQT 231
            QL+++   EV   A  AL  ++  + D    V++      ++ L     PS++  A  T
Sbjct: 179 IQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWT 238

Query: 232 VVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVID 291
           + N+  G   Q    +   ALP L  L+     +    DACW IS ++ G  E IQAVID
Sbjct: 239 LSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTE-TLVDACWAISYLSDGPQEAIQAVID 297

Query: 292 AGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPE 351
             +   LV LL +    ++  A RA+ N    G   Q + ++  G +  L  LL      
Sbjct: 298 VRIPKRLVELLSHESTLVQTPALRAVGN-IVTGNDLQTQVVINAGVLPALRLLLSSPKEN 356

Query: 352 IVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKS 411
           I               EA   +        +  Q V +A  +  +  L      +  +++
Sbjct: 357 IKK-------------EACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEA 403

Query: 412 VKIL 415
              +
Sbjct: 404 CWAI 407

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  445 bits (1146), Expect = e-154
 Identities = 187/424 (44%), Positives = 262/424 (61%), Gaps = 13/424 (3%)

Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
           +V G+ S++   QL+AT   RKLLS  +  P + +I  G++P+FV FL + D   +QFE+
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121

Query: 61  AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
           AWAL NI SGTSE TK V+D GA+P F+ LLASP   I EQAV ALGN+A D +  RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181

Query: 121 LSEEALIPLLTQLNKH----AKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLV 175
           +   A+ PLL  L            LR  TWTLSN C  K P P  D V   LP L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241

Query: 176 HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
           H ND EV+ D+C A+ YL++G N+ I+ V++ GV P+LV+LLG     ++T AL+ + NI
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301

Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLI 295
             G D QTQ +I+ GAL     LL  N K +I+ +A WT+SNITAG  + IQ V++ GL+
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 360

Query: 296 GPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTV 355
             LV +L  A+F  +  AA AI+N T GGT EQI YLV  G I+PL +LL   D +I+ V
Sbjct: 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420

Query: 356 FLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKIL 415
            L  +  I +  E        +G+  + + ++EE  GL+KIE L+ H+N+ +++ S+ ++
Sbjct: 421 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473

Query: 416 ETYW 419
           E Y+
Sbjct: 474 EKYF 477

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  145 bits (368), Expect = 9e-39
 Identities = 66/291 (22%), Positives = 121/291 (41%), Gaps = 12/291 (4%)

Query: 10  NNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVS 69
                  T  +  L  N   AP  + +   ++P  V  L+  + P++  ++ WA+  +  
Sbjct: 204 CGYLRNLTWTLSNLCRNKNPAPPLDAVE-QILPTLVR-LLHHNDPEVLADSCWAISYLTD 261

Query: 70  GTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPL 129
           G +E  ++V+  G VP  VKLL +    I   A+ A+GN+   +      V+   AL  +
Sbjct: 262 GPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGAL-AV 320

Query: 130 LTQLNKHAKLSMLRIATWTLSNFCAGKPKPI-FDQVRPALPALAQLVHSNDKEVMTDACR 188
              L  + K ++ + ATWT+SN  AG+   I        +P L  ++   D +   +A  
Sbjct: 321 FPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAW 380

Query: 189 ALFYLSE-GTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIA------AGDDF 241
           A+   +  GT ++I  ++  G+   L+ LL      ++   L  + NI          + 
Sbjct: 381 AITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEK 440

Query: 242 QTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDA 292
            +  I  CG L  +  L  H ++ S+   +   I    +   E  Q V+  
Sbjct: 441 LSIMIEECGGLDKIEALQRHENE-SVYKASLNLIEKYFSVEEEEDQNVVPE 490

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  134 bits (339), Expect = 9e-35
 Identities = 55/249 (22%), Positives = 108/249 (43%), Gaps = 11/249 (4%)

Query: 7   SDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKN 66
            +D  +  ++   I  L     +   E V+  GVVP+ V+ L   +   +   A  A+ N
Sbjct: 243 HNDPEVLADSCWAISYLTDGP-NERIEMVVKKGVVPQLVKLLGATE-LPIVTPALRAIGN 300

Query: 67  IVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEAL 126
           IV+GT E T+ VID GA+ +F  LL +P  +I+++A   + N+ A        V++   L
Sbjct: 301 IVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG-L 359

Query: 127 IPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVR--PALPALAQLVHSNDKEVMT 184
           +P L  +   A     + A W ++N+ +G        +     +  L  L+ + D +++ 
Sbjct: 360 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 419

Query: 185 DACRALFYLSE------GTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG 238
               A+  + +       T      + E G   ++  L  H + SV   +L  +    + 
Sbjct: 420 VILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSV 479

Query: 239 DDFQTQCII 247
           ++ + Q ++
Sbjct: 480 EEEEDQNVV 488

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  124 bits (312), Expect = 3e-31
 Identities = 54/255 (21%), Positives = 95/255 (37%), Gaps = 20/255 (7%)

Query: 167 ALPALAQLVHSNDKEVMTDACRALF-YLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVL 225
           ++  + + ++SN+ E    A +A    LS      I  +I AG+ P+ V  LG    S +
Sbjct: 58  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117

Query: 226 TR-ALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSE 284
              +   + NIA+G   QT+ +++ GA+P  + LL   H   I   A W + NI    S 
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSA 176

Query: 285 HIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFG----GTHEQIKYLVREGCIKP 340
               VI  G I PL+ LL   +              T        +        E  +  
Sbjct: 177 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 236

Query: 341 LCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLR 400
           L  LL   DPE++      +  +                 N+  ++V +   + ++  L 
Sbjct: 237 LVRLLHHNDPEVLADSCWAISYLTD-------------GPNERIEMVVKKGVVPQLVKLL 283

Query: 401 SHDNDEIHEKSVKIL 415
                 I   +++ +
Sbjct: 284 GATELPIVTPALRAI 298

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 60.0 bits (145), Expect = 6e-10
 Identities = 38/196 (19%), Positives = 67/196 (34%), Gaps = 17/196 (8%)

Query: 227 RALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA-GNSEH 285
             L T  +  A  D  +       ++  ++  +  N+ +S    A      + +      
Sbjct: 34  PDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQL-QATQAARKLLSREKQPP 92

Query: 286 IQAVIDAGLIGPLVNLLQNAEF-DIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDL 344
           I  +I AGLI   V+ L   +   I+  +A A++N    GT EQ K +V  G I     L
Sbjct: 93  IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIA-SGTSEQTKAVVDGGAIPAFISL 151

Query: 345 LLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDN 404
           L      I    +  L  I              GD + +  LV +   ++ +  L +  +
Sbjct: 152 LASPHAHISEQAVWALGNI-------------AGDGSAFRDLVIKHGAIDPLLALLAVPD 198

Query: 405 DEIHEKSVKILETYWC 420
                       T+  
Sbjct: 199 LSTLACGYLRNLTWTL 214

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  291 bits (746), Expect = 2e-92
 Identities = 62/427 (14%), Positives = 129/427 (30%), Gaps = 18/427 (4%)

Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
           +V  + + ++      T      LS+        +   G +P  V+ L       + F A
Sbjct: 61  IVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPV-DSVLFYA 118

Query: 61  AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
              L N++         V   G +   V LL   +          L  +A  +   + ++
Sbjct: 119 ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 178

Query: 121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDK 180
           L+      L+  +  +    +L   +  L                  + AL   +    +
Sbjct: 179 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQ 238

Query: 181 EVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD 240
            ++ +    L  LS+    +       G+   LV+LLG    +V+T A   + N+   + 
Sbjct: 239 RLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 295

Query: 241 FQTQCIINCGALPYLLGLLIHNH-KKSIKTDACWTISNITAGNSEH---IQAVIDAGLIG 296
                +   G +  L+  ++    ++ I   A   + ++T+ + E      AV     + 
Sbjct: 296 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLP 355

Query: 297 PLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVF 356
            +V LL          A   +              L  +G I  L  LL+ A  +     
Sbjct: 356 VVVKLLHPPSHWPLIKATVGLIRNL-ALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 414

Query: 357 LKGLEKILKVGEAEKNMDIA--------IGDVNQYAQLVEEAEGLEKIENLRSHDNDEIH 408
             G  +   V        +         +        ++     +     L     + I 
Sbjct: 415 SMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQ 474

Query: 409 EKSVKIL 415
             +  +L
Sbjct: 475 RVAAGVL 481

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  212 bits (541), Expect = 2e-62
 Identities = 71/359 (19%), Positives = 125/359 (34%), Gaps = 14/359 (3%)

Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
           +   +  +D  +  +A   + +L     ++    +    +V   V  +   +  +     
Sbjct: 19  LTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCT 77

Query: 61  AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
           A  L N+ S   E    +   G +P  VK+L SP D +   A+  L N+       +  V
Sbjct: 78  AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 136

Query: 121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRP-ALPALAQLVHSND 179
                 +  +  L     +  L I T  L     G  +     +      AL  ++ +  
Sbjct: 137 RLAGG-LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 195

Query: 180 KEVMT-DACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG 238
            E +     R L  LS   +    A++EAG    L   L  PS  ++   L T+ N++  
Sbjct: 196 YEKLLWTTSRVLKVLS-VCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 254

Query: 239 DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPL 298
               T+     G L  L+ LL  +    + T A   +SN+T  N ++   V   G I  L
Sbjct: 255 ---ATKQEGMEGLLGTLVQLLGSDDIN-VVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 310

Query: 299 VNLLQNA--EFDIKNWAARAISNATFGGTH--EQIKYLVREGCIKPLCDLLLCADPEIV 353
           V  +  A    DI   A  A+ + T            +     +  +  LL       +
Sbjct: 311 VRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 369

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  206 bits (526), Expect = 3e-60
 Identities = 66/436 (15%), Positives = 131/436 (30%), Gaps = 47/436 (10%)

Query: 7   SDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKN 66
           S  +++   A T +  LL + +      V   G + + V  L+ +   +        L+ 
Sbjct: 109 SPVDSVLFYAITTLHNLLLH-QEGAKMAVRLAGGLQKMVA-LLNKTNVKFLAITTDCLQI 166

Query: 67  IVSGTSEDTKVVIDHGAVPIFVKLLASPSD-DIREQAVCALGNVAADSARCRDLVLSEEA 125
           +  G  E   +++  G     V ++ + +   +       L  ++  S+  +  ++    
Sbjct: 167 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS-NKPAIVEAGG 225

Query: 126 LIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTD 185
            +  L          +++   WTL N      K     +   L  L QL+ S+D  V+T 
Sbjct: 226 -MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTC 282

Query: 186 ACRALFYLSEGTNDEIQAVIEAGVCPRLVELL--GHPSPSVLTRALQTVVNIAAGDD--- 240
           A   L  L+         V + G    LV  +        +   A+  + ++ +      
Sbjct: 283 AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAE 342

Query: 241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVN 300
                +     LP ++ LL H         A   +    A    +   + + G I  LV 
Sbjct: 343 MAQNAVRLHYGLPVVVKLL-HPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQ 401

Query: 301 LLQNAEFDIKNWAARAISNATFGG--------------------THEQIKYLVREGCIKP 340
           LL  A  D +   +   +   F                             +     I  
Sbjct: 402 LLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPL 461

Query: 341 LCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLR 400
              LL      I  V    L ++ +  E               A+ +E       +  L 
Sbjct: 462 FVQLLYSPIENIQRVAAGVLCELAQDKE--------------AAEAIEAEGATAPLTELL 507

Query: 401 SHDNDEIHEKSVKILE 416
              N+ +   +  +L 
Sbjct: 508 HSRNEGVATYAAAVLF 523

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  201 bits (513), Expect = 2e-58
 Identities = 62/384 (16%), Positives = 134/384 (34%), Gaps = 20/384 (5%)

Query: 32  TEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLL 91
            +  +    +P   + L  ED   +  +AA  +  +    +    ++     V   V+ +
Sbjct: 7   DDAELATRAIPELTKLLNDED-QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 65

Query: 92  ASPSD-DIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLS 150
            + +D +        L N+ +        +      IP L ++      S+L  A  TL 
Sbjct: 66  QNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGG-IPALVKMLGSPVDSVLFYAITTLH 123

Query: 151 NFCAGKPK-PIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGV 209
           N    +    +  ++   L  +  L++  + + +      L  L+ G  +    ++ +G 
Sbjct: 124 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 183

Query: 210 CPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKT 269
              LV ++   +   L      V+ + +        I+  G +  L   L     + +  
Sbjct: 184 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQ 242

Query: 270 DACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQI 329
           +  WT+ N++   ++        GL+G LV LL + + ++   AA  +SN T     +  
Sbjct: 243 NCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY-KNK 298

Query: 330 KYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVG-EAEKNMDIAIGDVNQYAQLVE 388
             + + G I+ L   +L A            E I +    A +++     +       V 
Sbjct: 299 MMVCQVGGIEALVRTVLRAGDR---------EDITEPAICALRHLTSRHQEAEMAQNAVR 349

Query: 389 EAEGLEKIENLRSHDNDEIHEKSV 412
              GL  +  L    +     K+ 
Sbjct: 350 LHYGLPVVVKLLHPPSHWPLIKAT 373

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  185 bits (472), Expect = 1e-52
 Identities = 58/345 (16%), Positives = 118/345 (34%), Gaps = 20/345 (5%)

Query: 73  EDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQ 132
                 +   A+P   KLL      +  +A   +  ++   A    ++ S + +  ++  
Sbjct: 5   YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 64

Query: 133 LNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFY 192
           +     +   R    TL N    +   +       +PAL +++ S    V+  A   L  
Sbjct: 65  MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 124

Query: 193 LSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGAL 252
           L         AV  AG   ++V LL   +   L      +  +A G+      I+  G  
Sbjct: 125 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 184

Query: 253 PYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNW 312
             L+ ++     + +       +  + +  S +  A+++AG +  L   L +    +   
Sbjct: 185 QALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQN 243

Query: 313 AARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKN 372
               + N +   T +       EG +  L  LL   D  +VT     L            
Sbjct: 244 CLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCAAGILSN---------- 289

Query: 373 MDIAIGDVNQYAQLVEEAEGLEKIENL--RSHDNDEIHEKSVKIL 415
             +   +      +V +  G+E +     R+ D ++I E ++  L
Sbjct: 290 --LTCNNYKN-KMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  170 bits (432), Expect = 6e-47
 Identities = 59/355 (16%), Positives = 114/355 (32%), Gaps = 34/355 (9%)

Query: 7   SDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKN 66
                +    +  ++ L     S+    ++  G +      L      +L     W L+N
Sbjct: 194 YTYEKLLWTTSRVLKVLSVC--SSNKPAIVEAGGMQALGLHLTDPS-QRLVQNCLWTLRN 250

Query: 67  IVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEAL 126
           +   +   TK     G +   V+LL S   ++   A   L N+  ++ + + +V     +
Sbjct: 251 L---SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 307

Query: 127 IPLL-TQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRP----ALPALAQLVHSNDKE 181
             L+ T L    +  +   A   L +  +   +    Q        LP + +L+H     
Sbjct: 308 EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW 367

Query: 182 VMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDF 241
            +  A   L             + E G  PRLV+LL         R           +  
Sbjct: 368 PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV 427

Query: 242 QT---------------------QCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA 280
           +                        I     +P  + LL ++  ++I+  A   +  + A
Sbjct: 428 RMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLL-YSPIENIQRVAAGVLCEL-A 485

Query: 281 GNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVRE 335
            + E  +A+   G   PL  LL +    +  +AA  +   +     +  K L  E
Sbjct: 486 QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVE 540

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  135 bits (342), Expect = 1e-34
 Identities = 59/321 (18%), Positives = 99/321 (30%), Gaps = 31/321 (9%)

Query: 7   SDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFL-MREDYPQLQFEAAWALK 65
           SDD N+   A   +  L  N        V   G +   V  +    D   +   A  AL+
Sbjct: 274 SDDINVVTCAAGILSNLTCNNYKN-KMMVCQVGGIEALVRTVLRAGDREDITEPAICALR 332

Query: 66  NIVSGTSEDTKV---VIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLS 122
           ++ S   E       V  H  +P+ VKLL  PS     +A   L    A        +  
Sbjct: 333 HLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLRE 392

Query: 123 EEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEV 182
           + A IP L QL   A     R  +   +                       +     +E+
Sbjct: 393 QGA-IPRLVQLLVRAHQDTQRRTSMGGTQ-------------------QQFVEGVRMEEI 432

Query: 183 MTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQ 242
           +     AL  L+         +      P  V+LL  P  ++   A   +  +A   +  
Sbjct: 433 VEGCTGALHILARD-VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAA 491

Query: 243 TQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLL 302
            + I   GA   L  LL   ++  + T A   +  ++    +  +  +   L     +L 
Sbjct: 492 -EAIEAEGATAPLTELLHSRNEG-VATYAAAVLFRMSEDKPQDYKKRLSVEL---TSSLF 546

Query: 303 QNAEFDIKNWAARAISNATFG 323
           +         A   +     G
Sbjct: 547 RTEPMAWNETADLGLDIGAQG 567

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  104 bits (260), Expect = 5e-24
 Identities = 27/156 (17%), Positives = 61/156 (39%), Gaps = 4/156 (2%)

Query: 198 NDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLG 257
           N +  A +     P L +LL      V+ +A   V  ++  +  +   + +   +  ++ 
Sbjct: 4   NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 63

Query: 258 LLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAI 317
            + + +          T+ N+ + + E + A+  +G I  LV +L +    +  +A   +
Sbjct: 64  TMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 122

Query: 318 SNATFGGTHEQIKYLVRE-GCIKPLCDLLLCADPEI 352
            N       E  K  VR  G ++ +  LL   + + 
Sbjct: 123 HNLLLH--QEGAKMAVRLAGGLQKMVALLNKTNVKF 156

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  282 bits (724), Expect = 3e-90
 Identities = 62/427 (14%), Positives = 129/427 (30%), Gaps = 18/427 (4%)

Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
           +V  + + ++      T      LS+        +   G +P  V+ L       + F A
Sbjct: 64  IVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPV-DSVLFYA 121

Query: 61  AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
              L N++         V   G +   V LL   +          L  +A  +   + ++
Sbjct: 122 ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 181

Query: 121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDK 180
           L+      L+  +  +    +L   +  L                  + AL   +    +
Sbjct: 182 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQ 241

Query: 181 EVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD 240
            ++ +    L  LS+    +       G+   LV+LLG    +V+T A   + N+   + 
Sbjct: 242 RLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 298

Query: 241 FQTQCIINCGALPYLLGLLIHNH-KKSIKTDACWTISNITAGNSEH---IQAVIDAGLIG 296
                +   G +  L+  ++    ++ I   A   + ++T+ + E      AV     + 
Sbjct: 299 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLP 358

Query: 297 PLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVF 356
            +V LL          A   +              L  +G I  L  LL+ A  +     
Sbjct: 359 VVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQDTQRRT 417

Query: 357 LKGLEKILKVGEAEKNMDIA--------IGDVNQYAQLVEEAEGLEKIENLRSHDNDEIH 408
             G  +   V        +         +        ++     +     L     + I 
Sbjct: 418 SMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQ 477

Query: 409 EKSVKIL 415
             +  +L
Sbjct: 478 RVAAGVL 484

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  226 bits (577), Expect = 1e-68
 Identities = 75/416 (18%), Positives = 141/416 (33%), Gaps = 25/416 (6%)

Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
           +   +  +D  +  +A   + +L     ++    +    +V   V  +   +  +     
Sbjct: 22  LTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCT 80

Query: 61  AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
           A  L N+ S   E    +   G +P  VK+L SP D +   A+  L N+       +  V
Sbjct: 81  AGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 139

Query: 121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRP-ALPALAQLVHSND 179
                 +  +  L     +  L I T  L     G  +     +      AL  ++ +  
Sbjct: 140 RLAGG-LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 198

Query: 180 KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGD 239
            E +      +  +    +    A++EAG    L   L  PS  ++   L T+ N++   
Sbjct: 199 YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS--- 255

Query: 240 DFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLV 299
           D  T+     G L  L+ LL  +    + T A   +SN+T  N ++   V   G I  LV
Sbjct: 256 DAATKQEGMEGLLGTLVQLLGSDDIN-VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 314

Query: 300 NLLQNA--EFDIKNWAARAISNATFGGTH--EQIKYLVREGCIKPLCDLLLCADPEIVTV 355
             +  A    DI   A  A+ + T            +     +  +  LL       +  
Sbjct: 315 RTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIK 374

Query: 356 FLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKS 411
              GL + L           A+   N     + E   + ++  L    + +   ++
Sbjct: 375 ATVGLIRNL-----------ALCPANH--APLREQGAIPRLVQLLVRAHQDTQRRT 417

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  208 bits (531), Expect = 7e-62
 Identities = 66/434 (15%), Positives = 130/434 (29%), Gaps = 45/434 (10%)

Query: 7   SDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKN 66
           S  +++   A T +  LL +        V   G + + V  L+ +   +        L+ 
Sbjct: 112 SPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVA-LLNKTNVKFLAITTDCLQI 169

Query: 67  IVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEAL 126
           +  G  E   +++  G     V ++ + + +        +  V +  +  +  ++    +
Sbjct: 170 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGM 229

Query: 127 IPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDA 186
             L   L       +++   WTL N      K     +   L  L QL+ S+D  V+T A
Sbjct: 230 QALGLHL-TDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCA 286

Query: 187 CRALFYLSEGTNDEIQAVIEAGVCPRLVELL--GHPSPSVLTRALQTVVNIAAGDDF--- 241
              L  L+         V + G    LV  +        +   A+  + ++ +       
Sbjct: 287 AGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEM 346

Query: 242 QTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNL 301
               +     LP ++ LL H         A   +    A    +   + + G I  LV L
Sbjct: 347 AQNAVRLHYGLPVVVKLL-HPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQL 405

Query: 302 LQNAEFDIKNWAARAISNATFGG--------------------THEQIKYLVREGCIKPL 341
           L  A  D +   +   +   F                             +     I   
Sbjct: 406 LVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLF 465

Query: 342 CDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRS 401
             LL      I  V    L ++ +  E               A+ +E       +  L  
Sbjct: 466 VQLLYSPIENIQRVAAGVLCELAQDKE--------------AAEAIEAEGATAPLTELLH 511

Query: 402 HDNDEIHEKSVKIL 415
             N+ +   +  +L
Sbjct: 512 SRNEGVATYAAAVL 525

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  194 bits (494), Expect = 2e-56
 Identities = 60/351 (17%), Positives = 121/351 (34%), Gaps = 20/351 (5%)

Query: 67  IVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEAL 126
           +V+  +      +   A+P   KLL      +  +A   +  ++   A    ++ S + +
Sbjct: 2   VVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMV 61

Query: 127 IPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDA 186
             ++  +     +   R    TL N    +   +       +PAL +++ S    V+  A
Sbjct: 62  SAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYA 121

Query: 187 CRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCI 246
              L  L         AV  AG   ++V LL   +   L      +  +A G+      I
Sbjct: 122 ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 181

Query: 247 INCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAE 306
           +  G    L+ ++     + +       +  + +  S +  A+++AG +  L   L +  
Sbjct: 182 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHLTDPS 240

Query: 307 FDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKV 366
             +       + N     +    K    EG +  L  LL   D  +VT     L  +   
Sbjct: 241 QRLVQNCLWTLRNL----SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 296

Query: 367 GEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENL--RSHDNDEIHEKSVKIL 415
               K              +V +  G+E +     R+ D ++I E ++  L
Sbjct: 297 NYKNK-------------MMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  185 bits (472), Expect = 2e-53
 Identities = 62/381 (16%), Positives = 135/381 (35%), Gaps = 21/381 (5%)

Query: 39  GVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSD-D 97
             +P   + L  ED   +  +AA  +  +    +    ++     V   V+ + + +D +
Sbjct: 17  RAIPELTKLLNDED-QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVE 75

Query: 98  IREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKP 157
                   L N++         +      IP L ++      S+L  A  TL N    + 
Sbjct: 76  TARCTAGTLHNLSHHRE-GLLAIFKSGG-IPALVKMLGSPVDSVLFYAITTLHNLLLHQE 133

Query: 158 KPIFDQVRP-ALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVEL 216
                      L  +  L++  + + +      L  L+ G  +    ++ +G    LV +
Sbjct: 134 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 193

Query: 217 LGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTIS 276
           +   +   L      V+ + +        I+  G +  L   L    ++ +  +  WT+ 
Sbjct: 194 MRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQR-LVQNCLWTLR 252

Query: 277 NITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREG 336
           N++   ++        GL+G LV LL + + ++   AA  +SN T     +    + + G
Sbjct: 253 NLSDAATKQEGM---EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY-KNKMMVCQVG 308

Query: 337 CIKPLCDLLLCADPEIVTVFLKGLEKILK-VGEAEKNMDIAIGDVNQYAQLVEEAEGLEK 395
            I+ L   +L A            E I +    A +++     +       V    GL  
Sbjct: 309 GIEALVRTVLRAGDR---------EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPV 359

Query: 396 -IENLRSHDNDEIHEKSVKIL 415
            ++ L    +  + + +V ++
Sbjct: 360 VVKLLHPPSHWPLIKATVGLI 380

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  120 bits (303), Expect = 8e-30
 Identities = 55/277 (19%), Positives = 88/277 (31%), Gaps = 28/277 (10%)

Query: 7   SDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFL-MREDYPQLQFEAAWALK 65
           SDD N+   A   +  L  N        V   G +   V  +    D   +   A  AL+
Sbjct: 277 SDDINVVTCAAGILSNLTCNNYKN-KMMVCQVGGIEALVRTVLRAGDREDITEPAICALR 335

Query: 66  NIVSGTSEDTKV---VIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLS 122
           ++ S   E       V  H  +P+ VKLL  PS     +A   L    A        +  
Sbjct: 336 HLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLRE 395

Query: 123 EEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEV 182
           + A IP L QL   A     R  +   +     +   + + V     AL  L       +
Sbjct: 396 QGA-IPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 454

Query: 183 MTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQ 242
                                +      P  V+LL  P  ++   A   +  +A   +  
Sbjct: 455 --------------------VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAA 494

Query: 243 TQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNIT 279
            + I   GA   L  LL   ++  + T A   +  ++
Sbjct: 495 -EAIEAEGATAPLTELLHSRNEG-VATYAAAVLFRMS 529

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  244 bits (625), Expect = 5e-79
 Identities = 92/250 (36%), Positives = 139/250 (55%), Gaps = 15/250 (6%)

Query: 167 ALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLT 226
            LP + Q ++S+D +    A R    +    N++IQAVI+AG  P LV+LL  P+  +L 
Sbjct: 13  ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 227 RALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHI 286
            AL  + NIA+G + Q Q +I+ GALP L+ LL   +++ I  +A W +SNI +G +E I
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQI 131

Query: 287 QAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLL 346
           QAVIDAG +  LV LL +    I   A  A+SN   GG +EQI+ ++  G +  L  LL 
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLS 190

Query: 347 CADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDE 406
             + +I+   L  L  I   G              +  Q V+EA  LEK+E L+SH+N++
Sbjct: 191 SPNEQILQEALWALSNIASGGN-------------EQKQAVKEAGALEKLEQLQSHENEK 237

Query: 407 IHEKSVKILE 416
           I +++ + LE
Sbjct: 238 IQKEAQEALE 247

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  232 bits (594), Expect = 2e-74
 Identities = 81/238 (34%), Positives = 129/238 (54%), Gaps = 4/238 (1%)

Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
           M   + SDD   QL AT    ++LS+  +   + VI  G +P  V+ L   +  Q+  EA
Sbjct: 17  MTQQLNSDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPN-EQILQEA 74

Query: 61  AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
            WAL NI SG +E  + VID GA+P  V+LL+SP++ I ++A+ AL N+A+        V
Sbjct: 75  LWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 134

Query: 121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVR-PALPALAQLVHSND 179
           +   A +P L QL       +L+ A W LSN  +G  + I   +   ALPAL QL+ S +
Sbjct: 135 IDAGA-LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN 193

Query: 180 KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAA 237
           ++++ +A  AL  ++ G N++ QAV EAG   +L +L  H +  +   A + +  + +
Sbjct: 194 EQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  176 bits (449), Expect = 8e-53
 Identities = 88/281 (31%), Positives = 139/281 (49%), Gaps = 44/281 (15%)

Query: 39  GVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDI 98
             +P+  + L  +D  Q Q  A      I+S  +E  + VID GA+P  V+LL+SP++ I
Sbjct: 12  SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQI 70

Query: 99  REQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPK 158
            ++A+ AL N+A+        V+   AL                                
Sbjct: 71  LQEALWALSNIASGGNEQIQAVIDAGAL-------------------------------- 98

Query: 159 PIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLG 218
                     PAL QL+ S +++++ +A  AL  ++ G N++IQAVI+AG  P LV+LL 
Sbjct: 99  ----------PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS 148

Query: 219 HPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNI 278
            P+  +L  AL  + NIA+G + Q Q +I+ GALP L+ LL   +++ I  +A W +SNI
Sbjct: 149 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNI 207

Query: 279 TAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISN 319
            +G +E  QAV +AG +  L  L  +    I+  A  A+  
Sbjct: 208 ASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  170 bits (432), Expect = 3e-50
 Identities = 86/241 (35%), Positives = 131/241 (54%), Gaps = 5/241 (2%)

Query: 125 ALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVR--PALPALAQLVHSNDKEV 182
           + +P +TQ      +     AT   S   +   + I   V    ALPAL QL+ S ++++
Sbjct: 12  SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQI-QAVIDAGALPALVQLLSSPNEQI 70

Query: 183 MTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQ 242
           + +A  AL  ++ G N++IQAVI+AG  P LV+LL  P+  +L  AL  + NIA+G + Q
Sbjct: 71  LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 130

Query: 243 TQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLL 302
            Q +I+ GALP L+ LL  +  + I  +A W +SNI +G +E IQAVIDAG +  LV LL
Sbjct: 131 IQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 189

Query: 303 QNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEK 362
            +    I   A  A+SN    G +EQ + +   G ++ L  L    + +I     + LEK
Sbjct: 190 SSPNEQILQEALWALSN-IASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248

Query: 363 I 363
           +
Sbjct: 249 L 249

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 55.4 bits (134), Expect = 8e-09
 Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 17/135 (12%)

Query: 281 GNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKP 340
           G+  H         +  +   L + +   +  A R  S       +EQI+ ++  G +  
Sbjct: 3   GSHHHHH---HGSELPQMTQQLNSDDMQEQLSATRKFSQIL-SDGNEQIQAVIDAGALPA 58

Query: 341 LCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLR 400
           L  LL   + +I+   L  L             +IA G   Q  Q V +A  L  +  L 
Sbjct: 59  LVQLLSSPNEQILQEALWAL------------SNIASGGNEQ-IQAVIDAGALPALVQLL 105

Query: 401 SHDNDEIHEKSVKIL 415
           S  N++I ++++  L
Sbjct: 106 SSPNEQILQEALWAL 120

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  226 bits (579), Expect = 1e-72
 Identities = 76/197 (38%), Positives = 114/197 (57%), Gaps = 2/197 (1%)

Query: 167 ALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLT 226
            LP + Q ++S D++ +  A R L  ++ G N++IQAVI+AG  P LV+LL  P+  +L 
Sbjct: 13  ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 227 RALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHI 286
            AL  + NIA+G + Q Q +I+ GALP L+ LL  +  + I  +A W +SNI +G +E I
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQI 131

Query: 287 QAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLL 346
           QAVIDAG +  LV LL +    I   A  A+SN   GG +EQ + +   G ++ L  L  
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQS 190

Query: 347 CADPEIVTVFLKGLEKI 363
             + +I     + LEK+
Sbjct: 191 HENEKIQKEAQEALEKL 207

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  184 bits (470), Expect = 2e-56
 Identities = 73/217 (33%), Positives = 112/217 (51%), Gaps = 15/217 (6%)

Query: 202 QAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIH 261
                    P++V+ L  P    L  AL+ +  IA+G + Q Q +I+ GALP L+ LL  
Sbjct: 6   HHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS 65

Query: 262 NHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNAT 321
            +++ I  +A W +SNI +G +E IQAVIDAG +  LV LL +    I   A  A+SN  
Sbjct: 66  PNEQ-ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 124

Query: 322 FGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVN 381
             G +EQI+ ++  G +  L  LL   + +I+   L  L  I   G              
Sbjct: 125 -SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN------------- 170

Query: 382 QYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETY 418
           +  Q V+EA  LEK+E L+SH+N++I +++ + LE  
Sbjct: 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  162 bits (413), Expect = 4e-48
 Identities = 65/200 (32%), Positives = 106/200 (53%), Gaps = 3/200 (1%)

Query: 39  GVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDI 98
             +P+ V+ L   D  Q    A   L  I SG +E  + VID GA+P  V+LL+SP++ I
Sbjct: 12  SELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 70

Query: 99  REQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPK 158
            ++A+ AL N+A+        V+   A +P L QL       +L+ A W LSN  +G  +
Sbjct: 71  LQEALWALSNIASGGNEQIQAVIDAGA-LPALVQLLSSPNEQILQEALWALSNIASGGNE 129

Query: 159 PIFDQVRP-ALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELL 217
            I   +   ALPAL QL+ S +++++ +A  AL  ++ G N++ QAV EAG   +L +L 
Sbjct: 130 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQ 189

Query: 218 GHPSPSVLTRALQTVVNIAA 237
            H +  +   A + +  + +
Sbjct: 190 SHENEKIQKEAQEALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 61.1 bits (149), Expect = 5e-11
 Identities = 29/133 (21%), Positives = 51/133 (38%), Gaps = 14/133 (10%)

Query: 283 SEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLC 342
                       +  +V  L + +      A R +S     G +EQI+ ++  G +  L 
Sbjct: 2   RGSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIAS-GGNEQIQAVIDAGALPALV 60

Query: 343 DLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSH 402
            LL   + +I+   L  L             +IA G   Q  Q V +A  L  +  L S 
Sbjct: 61  QLLSSPNEQILQEALWAL------------SNIASGGNEQ-IQAVIDAGALPALVQLLSS 107

Query: 403 DNDEIHEKSVKIL 415
            N++I ++++  L
Sbjct: 108 PNEQILQEALWAL 120

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  220 bits (561), Expect = 2e-64
 Identities = 73/419 (17%), Positives = 139/419 (33%), Gaps = 27/419 (6%)

Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYP-QLQFE 59
                   D + Q   T   R      R+A   E +  G+     +F        Q   E
Sbjct: 72  SFNQEQVADIDGQYAMTRAQR-----VRAAMFPETLDEGMQIPSTQFDSAHPTNVQRLAE 126

Query: 60  AAWALKNIVSG-TSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRD 118
            +  LK+ V    +      +   A+P   KLL      +  +A   +  ++   A    
Sbjct: 127 PSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHA 186

Query: 119 LVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSN 178
           ++ S + +  ++  +     +   R  + TL N    +   +       +PAL  ++ S 
Sbjct: 187 IMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSP 246

Query: 179 DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG 238
              V+  A   L  L         AV  AG   ++V LL   +   L      +  +A G
Sbjct: 247 VDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 306

Query: 239 DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPL 298
           +      I+  G    L+ ++     + +       +  + +  S +  A+++AG +  L
Sbjct: 307 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQAL 365

Query: 299 VNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLK 358
              L +    +       + N     +    K    EG +  L  LL   D  +VT    
Sbjct: 366 GLHLTDPSQRLVQNCLWTLRNL----SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAG 421

Query: 359 GLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENL--RSHDNDEIHEKSVKIL 415
            L  +       K              +V +  G+E +     R+ D ++I E ++  L
Sbjct: 422 ILSNLTCNNYKNK-------------MMVCQVGGIEALVRTVLRAGDREDITEPAICAL 467

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  191 bits (487), Expect = 5e-54
 Identities = 66/428 (15%), Positives = 132/428 (30%), Gaps = 35/428 (8%)

Query: 7   SDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKN 66
                +    +  ++ L     S+    ++  G +      L      +L     W L+N
Sbjct: 330 YTYEKLLWTTSRVLKVLSVC--SSNKPAIVEAGGMQALGLHLTDPS-QRLVQNCLWTLRN 386

Query: 67  IVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEAL 126
           +   +   TK     G +   V+LL S   ++   A   L N+  ++ + + +V     +
Sbjct: 387 L---SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 443

Query: 127 IPLLTQL-NKHAKLSMLRIATWTLSNFCAGKP--KPIFDQVRP--ALPALAQLVHSNDKE 181
             L+  +     +  +   A   L +  +     +   + VR    LP + +L+H     
Sbjct: 444 EALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHW 503

Query: 182 VMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDF 241
            +  A   L             + E G  PRLV+LL         R           +  
Sbjct: 504 PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV 563

Query: 242 QT---------------------QCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA 280
           +                        I     +P  + LL ++  ++I+  A   +  + A
Sbjct: 564 RMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLL-YSPIENIQRVAAGVLCEL-A 621

Query: 281 GNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKP 340
            + E  +A+   G   PL  LL +    +  +AA  +   +     +  K L  E     
Sbjct: 622 QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVE-LTSS 680

Query: 341 LCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLR 400
           L         E   + L    +   +G  + +          Y Q     + + + E   
Sbjct: 681 LFRTEPMTWNETGDLGLDIGAQGEPLGYRQDDPSYRSFHSGGYGQDAMGMDPMMEHEMAG 740

Query: 401 SHDNDEIH 408
            H   +  
Sbjct: 741 HHPGPDYP 748

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  206 bits (526), Expect = 6e-63
 Identities = 59/316 (18%), Positives = 109/316 (34%), Gaps = 25/316 (7%)

Query: 48  LMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSD----------- 96
            M          A   L  + S   E    + + G +    +LL    +           
Sbjct: 40  PMPAPVEHQICPAVCVLMKL-SFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSI 98

Query: 97  DIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK 156
            +R  A  AL N+       +  + S +  +  L    K     + ++    L N     
Sbjct: 99  TLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRA 158

Query: 157 PKPIFDQVR--PALPALAQLV-HSNDKEVMTDACRALFYLS-EGTNDEIQAVIEAGVCPR 212
                  +R   ++ AL +       +  +     AL+ LS   T ++       G    
Sbjct: 159 DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAF 218

Query: 213 LVELLGHPSPSVLTR-------ALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKK 265
           LV  L + S +            L+ V ++ A ++   Q +     L  LL  L  +H  
Sbjct: 219 LVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSL 277

Query: 266 SIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGG- 324
           +I ++AC T+ N++A N +  +A+ D G +  L NL+ +    I   +A A+ N      
Sbjct: 278 TIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337

Query: 325 THEQIKYLVREGCIKP 340
              +   ++  G   P
Sbjct: 338 AKYKDANIMSPGSSLP 353

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  173 bits (441), Expect = 2e-50
 Identities = 58/336 (17%), Positives = 116/336 (34%), Gaps = 24/336 (7%)

Query: 64  LKNIVSGTSEDTKVVI-DHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLS 122
           L+ I +      +        +      + +P +     AVC L  ++ D    R  +  
Sbjct: 13  LEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEE-HRHAMNE 71

Query: 123 EEALIPLLTQL----------NKHAKLSMLRIATWTLSNFCAGKP--KPIFDQVRPALPA 170
              L  +   L          N H  +++ R A   L+N   G    K     ++  + A
Sbjct: 72  LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRA 131

Query: 171 LAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVI-EAGVCPRLVELLGHPS-PSVLTRA 228
           L   + S  +++       L  LS   +   +  + E G    L+E        S L   
Sbjct: 132 LVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSV 191

Query: 229 LQTVVNIAA-GDDFQTQCIINCGALPYLLGLLIHNHKKS---IKTDACWTISNIT---AG 281
           L  + N++A   + +       GAL +L+G L +  + +   I       + N++   A 
Sbjct: 192 LSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT 251

Query: 282 NSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPL 341
           N +H Q + +   +  L+  L++    I + A   + N +     +  + L   G +  L
Sbjct: 252 NEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA-RNPKDQEALWDMGAVSML 310

Query: 342 CDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAI 377
            +L+      I       L  ++    A+      +
Sbjct: 311 KNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIM 346

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  118 bits (296), Expect = 9e-30
 Identities = 50/342 (14%), Positives = 98/342 (28%), Gaps = 45/342 (13%)

Query: 101 QAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPI 160
             +  L  + A    C +   + E  +              +  A   L           
Sbjct: 8   HMLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD----- 62

Query: 161 FDQVRP------ALPALAQLVHS-----------NDKEVMTDACRALFYLSEGTNDEIQA 203
            ++ R        L A+A+L+                 +   A  AL  L+ G       
Sbjct: 63  -EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKAT 121

Query: 204 VI-EAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQ-CIINCGALPYLLGLLIH 261
           +    G    LV  L   S  +       + N++   D  ++  +   G++  L+   + 
Sbjct: 122 LCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALE 181

Query: 262 NHKKSIKTDACWTISNITAGNSE-HIQAVIDAGLIGPLVNLL----QNAEFDIKNWAARA 316
             K+S        + N++A  +E         G +  LV  L    Q     I       
Sbjct: 182 VKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGI 241

Query: 317 ISNATFG--GTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMD 374
           + N +       +  + L    C++ L   L      IV+     L  +     + +N  
Sbjct: 242 LRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL-----SARNPK 296

Query: 375 IAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILE 416
                     + + +   +  ++NL    +  I   S   L 
Sbjct: 297 --------DQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALR 330

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 97.6 bits (243), Expect = 1e-22
 Identities = 44/261 (16%), Positives = 84/261 (32%), Gaps = 47/261 (18%)

Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
           +VA + S+  ++Q    + +R L   A     + +   G V   +E  +           
Sbjct: 132 LVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSV 191

Query: 61  AWALKNIVSGTSED-TKVVIDHGAVPIFVKLLASPSDD----IREQAVCALGNVAADSAR 115
             AL N+ +  +E+   +    GA+   V  L   S      I E     L NV++  A 
Sbjct: 192 LSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT 251

Query: 116 CRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLV 175
             D     + L                                         L  L Q +
Sbjct: 252 NED---HRQILR-------------------------ENN-----------CLQTLLQHL 272

Query: 176 HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
            S+   ++++AC  L+ LS     + +A+ + G    L  L+      +   +   + N+
Sbjct: 273 KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 332

Query: 236 AAGDDFQTQ---CIINCGALP 253
            A    + +    +    +LP
Sbjct: 333 MANRPAKYKDANIMSPGSSLP 353

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  181 bits (460), Expect = 3e-52
 Identities = 62/340 (18%), Positives = 114/340 (33%), Gaps = 27/340 (7%)

Query: 5   VWSDDNNMQLEATTHIRKLLSNARS---APTEEVIPFGVVPRFVEFLMREDYPQLQFEAA 61
           + S  ++ +      +  LL   R+      E            +  M          A 
Sbjct: 110 IHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAV 169

Query: 62  WALKNIVSGTSEDTKVVIDHGAVPIFVKLLAS-----------PSDDIREQAVCALGNVA 110
             L  + S   E    + + G +    +LL              S  +R  A  AL N+ 
Sbjct: 170 CVLMKL-SFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT 228

Query: 111 ADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVR--PAL 168
                 +  + S +  +  L    K     + ++    L N            +R   ++
Sbjct: 229 FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSV 288

Query: 169 PALAQLV-HSNDKEVMTDACRALFYLSEGTNDE-IQAVIEAGVCPRLVELLGHPSPSVL- 225
            AL +       +  +     AL+ LS    +         G    LV  L + S +   
Sbjct: 289 KALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTL 348

Query: 226 ------TRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNIT 279
                    L+ V ++ A ++   Q +     L  LL  L  +H  +I ++AC T+ N++
Sbjct: 349 AIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLS 407

Query: 280 AGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISN 319
           A N +  +A+ D G +  L NL+ +    I   +A A+ N
Sbjct: 408 ARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 447

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  162 bits (411), Expect = 3e-45
 Identities = 55/299 (18%), Positives = 104/299 (34%), Gaps = 26/299 (8%)

Query: 7   SDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFL----------MREDYPQL 56
           +   +    A   + KL  +        +   G +    E L                 L
Sbjct: 159 APVEHQICPAVCVLMKLSFDEEH--RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITL 216

Query: 57  QFEAAWALKNIVSGTSEDTKVVI-DHGAVPIFVKLLASPSDDIREQAVCALGNVAAD-SA 114
           +  A  AL N+  G   +   +    G +   V  L S S+D+++     L N++     
Sbjct: 217 RRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADV 276

Query: 115 RCRDLVLSEEALIPLLTQLNKHAKLSMLRIAT---WTLSNFCAGKPKPIFDQVRPALPAL 171
             +  +    ++  L+    +  K S L+      W LS  C      I   V  AL  L
Sbjct: 277 NSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC-AVDGALAFL 335

Query: 172 AQLV----HSNDKEVMTDACRALFYLS---EGTNDEIQAVIEAGVCPRLVELLGHPSPSV 224
              +     +N   ++      L  +S       D  Q + E      L++ L   S ++
Sbjct: 336 VGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTI 395

Query: 225 LTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNS 283
           ++ A  T+ N++A +    + + + GA+  L  L+ H+  K I   +   + N+ A   
Sbjct: 396 VSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLI-HSKHKMIAMGSAAALRNLMANRP 453

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  160 bits (405), Expect = 3e-44
 Identities = 66/402 (16%), Positives = 138/402 (34%), Gaps = 60/402 (14%)

Query: 9   DNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMRED-----------YPQLQ 57
             + + + +  +  + S+  S     +   G +P  ++ L   D             + +
Sbjct: 42  GTHDKDDMSRTLLAMSSSQDS--CISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEAR 99

Query: 58  FEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKL------------------------LAS 93
             A+ AL NI+    +D +   +   + +  ++                        + +
Sbjct: 100 ARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPA 159

Query: 94  PSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQL----------NKHAKLSMLR 143
           P +     AVC L  ++ D    R  +     L  +   L          N H  +++ R
Sbjct: 160 PVEHQICPAVCVLMKLSFDEE-HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRR 218

Query: 144 IATWTLSNFCAGKP--KPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEI 201
            A   L+N   G    K     ++  + AL   + S  +++       L  LS   +   
Sbjct: 219 YAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNS 278

Query: 202 QAVI-EAGVCPRLVELLGHPS-PSVLTRALQTVVNIAA-GDDFQTQCIINCGALPYLLGL 258
           +  + E G    L+E        S L   L  + N++A   + +       GAL +L+G 
Sbjct: 279 KKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGT 338

Query: 259 LIHNHKKS---IKTDACWTISNIT---AGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNW 312
           L +  + +   I       + N++   A N +H Q + +   +  L+  L++    I + 
Sbjct: 339 LTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSN 398

Query: 313 AARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVT 354
           A   + N +     +  + L   G +  L +L+      I  
Sbjct: 399 ACGTLWNLSARNP-KDQEALWDMGAVSMLKNLIHSKHKMIAM 439

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  175 bits (445), Expect = 3e-50
 Identities = 67/448 (14%), Positives = 135/448 (30%), Gaps = 72/448 (16%)

Query: 41  VPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIRE 100
           +P+ V++L  +D  + Q   A+ +++         + V   G +   V LL SP+ ++++
Sbjct: 4   IPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 101 QAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK-PKP 159
            A  AL N+   S   +     +  +   ++ L +     + +  T  L N  +    K 
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 160 IFDQVRPALPALAQLV----------------HSNDKEVMTDACRALFYLSEGTNDEIQA 203
               +  ALP LA  V                   D EV  +A   L  LS         
Sbjct: 123 EL--IADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTM 180

Query: 204 VIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNH 263
              +G+   L+  + +   +           +    +   +           L     N 
Sbjct: 181 RNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240

Query: 264 KKSIKTDACWTISNI-------------TAGNSEHIQAVIDAGLIGPLVNLLQNAEFD-I 309
                +  C++  +                 N +    +  +  I   +NL+  ++ D  
Sbjct: 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDAT 300

Query: 310 KNWAARAISNATFG----GTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILK 365
               A A+ N T       +       ++E  +  +  LL   + ++V      L  + +
Sbjct: 301 LEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR 360

Query: 366 VGEAEKNMDIA---------------------------------IGDVNQYAQLVEEAEG 392
                + M                                    +    Q A+    +  
Sbjct: 361 HPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSM 420

Query: 393 LEKIENL-RSHDNDEIHEKSVKILETYW 419
           L  I NL RS  + +  E +  +L   W
Sbjct: 421 LNNIINLCRSSASPKAAEAARLLLSDMW 448

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  109 bits (273), Expect = 3e-26
 Identities = 36/307 (11%), Positives = 86/307 (28%), Gaps = 28/307 (9%)

Query: 39  GVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDI 98
           G              P++ F A   L+N+ S  +    +    G +   +  + +     
Sbjct: 142 GWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAAS 201

Query: 99  REQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNF------ 152
           R         +         L          L    ++A         ++  +       
Sbjct: 202 RCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNN 261

Query: 153 -------CAGKPKPIFDQVRPAL--PALAQLVHSNDKEVMTDACRALFYLSEGTNDE--- 200
                      PK              L  +  S     +     AL  L+         
Sbjct: 262 YDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG 321

Query: 201 --IQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGL 258
                 ++    P++  LL   +  V+      + N++         ++     P +  L
Sbjct: 322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTRL 379

Query: 259 LIHNHKKSIKTD-----ACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFD-IKNW 312
           L  +   +  ++     AC+T+ N+ A   +  +    + ++  ++NL +++        
Sbjct: 380 LTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEA 439

Query: 313 AARAISN 319
           A   +S+
Sbjct: 440 ARLLLSD 446

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 84.1 bits (207), Expect = 1e-17
 Identities = 28/267 (10%), Positives = 71/267 (26%), Gaps = 22/267 (8%)

Query: 166 PALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVL 225
             +P   Q + S D++        + +         Q V + G   +LV+LL  P+ +V 
Sbjct: 2   LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQ 61

Query: 226 TRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEH 285
             A   + N+                +   + LL       I+      + N+++ +   
Sbjct: 62  QAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE-- 119

Query: 286 IQAVIDAGLIGPLVNLL----------------QNAEFDIKNWAARAISN-ATFGGTHEQ 328
           ++  + A  +  L + +                +  + ++   A   + N ++     + 
Sbjct: 120 LKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQT 179

Query: 329 IKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVE 388
           +        +       +           K +E  + V         A            
Sbjct: 180 M---RNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYN 236

Query: 389 EAEGLEKIENLRSHDNDEIHEKSVKIL 415
                 +  +     N      +    
Sbjct: 237 ARNAYTEKSSTGCFSNKSDKMMNNNYD 263

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 70.2 bits (171), Expect = 3e-13
 Identities = 43/298 (14%), Positives = 93/298 (31%), Gaps = 30/298 (10%)

Query: 7   SDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKN 66
             D  +   AT  +R L S+A +         G++   +   ++      + +       
Sbjct: 154 VVDPEVFFNATGCLRNL-SSADAGRQTMRNYSGLIDSLMA-YVQNCVAASRCDDKSVENC 211

Query: 67  IVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVA--------------AD 112
           +    +   ++  +       ++  A  +   +    C                      
Sbjct: 212 MCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEET 271

Query: 113 SARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVR------P 166
           + +    +   +A+   L  + K  K + L      L N  A K        +       
Sbjct: 272 NPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEK 331

Query: 167 ALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELL------GHP 220
            LP +A+L+ S + +V+      L  +S   +  +  V+   V P +  LL         
Sbjct: 332 GLPQIARLLQSGNSDVVRSGASLLSNMS--RHPLLHRVMGNQVFPEVTRLLTSHTGNTSN 389

Query: 221 SPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNI 278
           S  +L+ A  TV N+ A      +   +   L  ++ L   +        A   +S++
Sbjct: 390 SEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  175 bits (443), Expect = 6e-49
 Identities = 70/454 (15%), Positives = 150/454 (33%), Gaps = 67/454 (14%)

Query: 23  LLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHG 82
           L S  +  P         +P  +  L       ++  AA  L+++     +    V    
Sbjct: 32  LDSLRKGGPPPPNWRQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLK 90

Query: 83  AVPIFVKLLASPSDDIREQAVCALGNVA-ADSARCRDLVLSEEALIPLLTQLNKHAKLSM 141
            +P+ V LL  P  ++   A  AL N++       +  + + + +  L+  L K   + +
Sbjct: 91  GIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDL 150

Query: 142 LRIATWTLSNFCAGKPKPIFDQVRPALPALAQLV------------------HSNDKEVM 183
             + T TL N  +       + V  AL AL   V                  H   + V+
Sbjct: 151 TEVITGTLWN-LSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVL 209

Query: 184 TDACRALFYLSEGTNDEIQAVIEA-GVCPRLVELLGH----------------------- 219
           T+    L  +S   ++  + + E  G+   L+ ++                         
Sbjct: 210 TNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLS 269

Query: 220 --------PSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDA 271
                    +      A     N         + +     +   + LL  +   +I   +
Sbjct: 270 YQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEAS 329

Query: 272 CWTISNITAGN---SEHIQAVI-DAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHE 327
              I N+ AG      +I++ +     +  + +LL N    +   A+ A+ N        
Sbjct: 330 AGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLA---VDA 386

Query: 328 QIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLV 387
           + K L+ +  I  L   L        + +    + ++ +      +   I +  + A+ +
Sbjct: 387 RNKELIGKHAIPNLVKNLPGGQQN--SSWNFSEDTVISILNTINEV---IAENLEAAKKL 441

Query: 388 EEAEGLEKIENLRSHDN--DEIHEKSVKILETYW 419
            E +G+EK+  +    N  ++    +  +L+T W
Sbjct: 442 RETQGIEKLVLINKSGNRSEKEVRAAALVLQTIW 475

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  102 bits (255), Expect = 1e-23
 Identities = 53/377 (14%), Positives = 107/377 (28%), Gaps = 68/377 (18%)

Query: 7   SDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKN 66
                + L A   ++ +           +     VP  V  L +     L       L N
Sbjct: 101 HPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWN 160

Query: 67  IVSGTSEDTKVVIDHGAVPIFVKLLASP------------------SDDIREQAVCALGN 108
           + S   +  K+ I   A+      +  P                   + +       L N
Sbjct: 161 LSS--HDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRN 218

Query: 109 VAADSARCRDLVLSEEALIPLLTQLNKHAKLS------MLRIATWTLSNFCAGKPKPIFD 162
           V+++ +  R  +   + L+  L  + +           ++      L N      + I  
Sbjct: 219 VSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQ 278

Query: 163 QVRP--------------------------ALPALAQLV-HSNDKEVMTDACRALFYLSE 195
             R                            +     L+  S    ++  +  A+  L  
Sbjct: 279 AERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCA 338

Query: 196 GTNDEI----QAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGA 251
           G          A+ +      + +LL +    V+  A   + N+A     + + +I   A
Sbjct: 339 GRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDA--RNKELIGKHA 396

Query: 252 LPYLLGLLIHNHKKSIKTD-------ACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQN 304
           +P L+  L    + S              TI+ + A N E  + + +   I  LV + ++
Sbjct: 397 IPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKS 456

Query: 305 AEFDIK--NWAARAISN 319
                K    AA  +  
Sbjct: 457 GNRSEKEVRAAALVLQT 473

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 54.2 bits (129), Expect = 5e-08
 Identities = 29/165 (17%), Positives = 53/165 (32%), Gaps = 17/165 (10%)

Query: 6   WSDDNNMQLEATTHIRKLLSNARSAPTE---EVIPFGVVPRFVEFLMREDYPQLQFEAAW 62
            S    +   +   I+ L +   +        +     +    + L  E   ++   A+ 
Sbjct: 319 ESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEH-ERVVKAASG 377

Query: 63  ALKNIVSGTSEDTKVVIDHGAVPIFVKLLAS--------PSDDIREQAVCALGNVAADSA 114
           AL+N+        K +I   A+P  VK L           S+D     +  +  V A++ 
Sbjct: 378 ALRNLAVD--ARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENL 435

Query: 115 RCRDLVLSEEALIPLLTQLNKHAKLS--MLRIATWTLSNFCAGKP 157
                +   +  I  L  +NK    S   +R A   L      K 
Sbjct: 436 EAAKKLRETQG-IEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  139 bits (352), Expect = 2e-38
 Identities = 34/235 (14%), Positives = 77/235 (32%), Gaps = 3/235 (1%)

Query: 39  GVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDI 98
             +P       +    Q +  A   L ++              G   +  + L + +  +
Sbjct: 39  QPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGL 98

Query: 99  REQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPK 158
           R +A   +G  + + A  ++ VL   AL  LL  L++ A  ++   A + +S     +  
Sbjct: 99  RWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEA 158

Query: 159 PIFDQVR-PALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELL 217
            +   +R      L + +    +++   +   L  L  G  +    +   G+  +LV L+
Sbjct: 159 GLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALV 218

Query: 218 GHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDAC 272
                      L  + ++        +          L  LL H  +   + +  
Sbjct: 219 RTEHSPFHEHVLGALCSLVTDFPQGVRECREPELG--LEELLRHRCQLLQQHEEY 271

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  124 bits (312), Expect = 1e-32
 Identities = 43/256 (16%), Positives = 90/256 (35%), Gaps = 9/256 (3%)

Query: 165 RPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSV 224
           +P  P   +   + D++    A   L  L E  ++       +G+   +   L   +  +
Sbjct: 39  QPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGL 98

Query: 225 LTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSE 284
             RA Q +   +       + ++  GAL  LL LL  +   +++  A + IS +      
Sbjct: 99  RWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEA 158

Query: 285 HIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDL 344
            +   +       L+  +Q     +K  +A  + N   G   E    L   G ++ L  L
Sbjct: 159 GLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHP-EHKGTLCSMGMVQQLVAL 217

Query: 345 LLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHD- 403
           +           L  L  ++   +  + +           +L+       + + L+ H+ 
Sbjct: 218 VRTEHSPFHEHVLGALCSLVT--DFPQGVRECREPELGLEELLR-----HRCQLLQQHEE 270

Query: 404 NDEIHEKSVKILETYW 419
             E  E   K+L+T +
Sbjct: 271 YQEELEFCEKLLQTCF 286

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 79.7 bits (196), Expect = 8e-17
 Identities = 23/182 (12%), Positives = 59/182 (32%), Gaps = 2/182 (1%)

Query: 7   SDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKN 66
           +    ++  A   I     N  +A  E+V+  G + + +  L R+    ++ +A +A+  
Sbjct: 93  AGAAGLRWRAAQLIGTCSQN-VAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISC 151

Query: 67  IVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEAL 126
           +V          +      + ++ +      ++ ++   L N+       +  + S    
Sbjct: 152 LVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM- 210

Query: 127 IPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDA 186
           +  L  L +             L +     P+ + +   P L     L H        + 
Sbjct: 211 VQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEE 270

Query: 187 CR 188
            +
Sbjct: 271 YQ 272

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  142 bits (358), Expect = 1e-36
 Identities = 58/447 (12%), Positives = 135/447 (30%), Gaps = 60/447 (13%)

Query: 11  NMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSG 70
           +    A+  + ++  N      +       +  +++  +     + +     A+  +++G
Sbjct: 219 SSSTIASVCLARIYENMYYDEAKARFT-DQIDEYIKDKLLAPDMESKVRVTVAITALLNG 277

Query: 71  TSED-TKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPL 129
             +   +VV   G + + + +  +  +  +  A   L   ++   + + L    E  + +
Sbjct: 278 PLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALC---EQGVDI 334

Query: 130 LTQLNKHAKLSMLRIATWTLSNFCAG-----KPKPIFDQVRPALPALAQ---LVHSNDKE 181
           L +L       +   A   L    +        +P  D     L    +   +    DK+
Sbjct: 335 LKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKD 394

Query: 182 VMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDF 241
           +   A   L YL+     + + + +      L++L    + S L   + T VN+    + 
Sbjct: 395 IRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEK 454

Query: 242 QT--------------------------------QCIINCGALPYLLGLLIHNHKKSIKT 269
           Q                                   + N G    L  L       + + 
Sbjct: 455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTES-HNSQE 513

Query: 270 DACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISN-ATFGGTHEQ 328
                ++ +  G  E    V+  G +  L+ +        K  A +A++           
Sbjct: 514 LIARVLNAV-CGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVS 572

Query: 329 IKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVE 388
                    I+PL +LL                  L+  E+   +           Q + 
Sbjct: 573 FSGQRSLDVIRPLLNLLQQDC------------TALENFESLMALTNLASMNESVRQRII 620

Query: 389 EAEGLEKIENLRSHDNDEIHEKSVKIL 415
           + +G+ KIE     D+  +   + + L
Sbjct: 621 KEQGVSKIEYYLMEDHLYLTRAAAQCL 647

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  129 bits (326), Expect = 1e-32
 Identities = 64/448 (14%), Positives = 135/448 (30%), Gaps = 65/448 (14%)

Query: 7   SDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVE-----FLMREDYPQLQFEAA 61
           S ++ +++ A   + KL S             G   +  E      +       ++  AA
Sbjct: 341 SKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAA 400

Query: 62  WALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVA----------- 110
             L  +        K++ D  ++   + L    +       V    N+            
Sbjct: 401 DGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPE 460

Query: 111 --------------------ADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLS 150
                                D    R  VL+ E +   L  L K    +   +    L+
Sbjct: 461 MIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLN 520

Query: 151 NFCAGKPKPIFDQVRP------ALPALAQLVHSNDKEVMTDACRALFYLSEGTNDE--IQ 202
             C         ++R        + AL ++     ++    A +AL  +    N E    
Sbjct: 521 AVC------GLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFS 574

Query: 203 AVIEAGVCPRLVELLGHPSPSVLTR-ALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIH 261
                 V   L+ LL     ++    +L  + N+A+ ++   Q II    +  +   L+ 
Sbjct: 575 GQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLME 634

Query: 262 NHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNAT 321
           +H   +   A   + N+            +   +  L  L ++ + +     A A++  T
Sbjct: 635 DHLY-LTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIIT 693

Query: 322 FGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVN 381
                   K L     +  L  L+    P +    +  +  ++  GE             
Sbjct: 694 SVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGE------------- 740

Query: 382 QYAQLVEEAEGLEKIENLRSHDNDEIHE 409
           + A+ + E + +E +  L    +D   +
Sbjct: 741 EIAKKLFETDIMELLSGLGQLPDDTRAK 768

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  121 bits (304), Expect = 9e-30
 Identities = 40/288 (13%), Positives = 88/288 (30%), Gaps = 8/288 (2%)

Query: 39  GVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDI 98
           G+       L + +    Q   A  L  +  G  E    V+  G V   +++    ++  
Sbjct: 495 GITTALCA-LAKTESHNSQELIARVLNAV-CGLKELRGKVVQEGGVKALLRMALEGTEKG 552

Query: 99  REQAVCALGN--VAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK 156
           +  A  AL    +  +         S + + PLL  L +         +   L+N  +  
Sbjct: 553 KRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMN 612

Query: 157 PKPIFDQVR-PALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVE 215
                  ++   +  +   +  +   +   A + L  L    +              L  
Sbjct: 613 ESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLAL 672

Query: 216 LLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTI 275
           L         T     +  I +      + I+   +   +L  LI N   +++      I
Sbjct: 673 LCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVII 732

Query: 276 SNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFD---IKNWAARAISNA 320
            N+     E  + + +  ++  L  L Q  +      +  A + ++ A
Sbjct: 733 LNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAA 780

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 83.0 bits (204), Expect = 4e-17
 Identities = 31/188 (16%), Positives = 59/188 (31%), Gaps = 6/188 (3%)

Query: 7   SDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKN 66
                   E+   +  L S   S   + +I    V +     + ED+  L   AA  L N
Sbjct: 592 DCTALENFESLMALTNLASMNESV-RQRIIKEQGVSKIEY-YLMEDHLYLTRAAAQCLCN 649

Query: 67  IVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEAL 126
           +V           ++  V     L     ++       AL  + + S +C + +L+  + 
Sbjct: 650 LVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASW 709

Query: 127 IPLLTQLNKHAKLSMLRIATWTLSNFCAG----KPKPIFDQVRPALPALAQLVHSNDKEV 182
           + +L  L  +   ++       + N          K     +   L  L QL      + 
Sbjct: 710 LDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKA 769

Query: 183 MTDACRAL 190
              A + L
Sbjct: 770 REVATQCL 777

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 19/126 (15%), Positives = 42/126 (33%), Gaps = 2/126 (1%)

Query: 7   SDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKN 66
            +D          +  + S +     + +     +      +     P +Q      + N
Sbjct: 676 DEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPS-PAVQHRGIVIILN 734

Query: 67  IVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEAL 126
           +++   E  K + +   + +   L   P D   +    A   +AA + R R +  S+ A 
Sbjct: 735 MINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAA-AERYRIIERSDNAE 793

Query: 127 IPLLTQ 132
           IP +  
Sbjct: 794 IPDVFA 799

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score =  115 bits (290), Expect = 4e-30
 Identities = 35/202 (17%), Positives = 65/202 (32%), Gaps = 19/202 (9%)

Query: 41  VPRFVEFLMRED-YPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIR 99
           + R V  L  +   P     AA  +++     SE  K V     +   ++LL   ++D++
Sbjct: 10  LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69

Query: 100 EQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKP 159
                AL N+  +    +  V     +  LL  L +   L   +  T  L N  +     
Sbjct: 70  RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK 129

Query: 160 IFDQVRPALPALAQLV----------------HSNDKEVMTDACRALFYLSEGTNDEIQA 203
               +  AL  L + +                   D ++  +    L  +S    D  +A
Sbjct: 130 N-LMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKA 188

Query: 204 VIEA-GVCPRLVELLGHPSPSV 224
           +    G+   LV  +       
Sbjct: 189 MRRCDGLIDSLVHYVRGTIADY 210

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 82.7 bits (204), Expect = 3e-18
 Identities = 25/209 (11%), Positives = 66/209 (31%), Gaps = 24/209 (11%)

Query: 163 QVRPALPALAQLVHSNDK--EVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHP 220
            +   L     ++ ++      ++ A   + +     ++  + V +     +L++LL   
Sbjct: 5   DMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ 64

Query: 221 SPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA 280
           +  V       + N+   D+     +     +P LL +L        K      + N+++
Sbjct: 65  NEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS 124

Query: 281 GNSEHIQAVIDAGLIGPLVNLL----------------QNAEFDIKNWAARAISNATFGG 324
              + ++ ++    +  L   +                   +FDI       + N +  G
Sbjct: 125 N--DKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAG 182

Query: 325 THEQIKYLVRE--GCIKPLCDLLLCADPE 351
                +  +R   G I  L   +     +
Sbjct: 183 --ADGRKAMRRCDGLIDSLVHYVRGTIAD 209

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 78.6 bits (193), Expect = 1e-16
 Identities = 38/197 (19%), Positives = 70/197 (35%), Gaps = 21/197 (10%)

Query: 40  VVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIR 99
           ++ +    L + +   L  E A A   +     E  K +I     P+         +  +
Sbjct: 70  MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMI-----PVLFANYRIGDEKTK 124

Query: 100 EQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKP 159
                AL  +A  +      ++     + +L+  N+  KL+ L        NF     + 
Sbjct: 125 INVSYALEEIAKANPMLMASIV--RDFMSMLSSKNREDKLTAL--------NFIEAMGEN 174

Query: 160 IFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH 219
            F  V P LP +  L+H  D+ V   A  AL +L+   +   + VI      + +E L  
Sbjct: 175 SFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELND 228

Query: 220 PSPSVLTRALQTVVNIA 236
            S  V     + +  + 
Sbjct: 229 TSSLVNKTVKEGISRLL 245

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 64.3 bits (156), Expect = 8e-12
 Identities = 34/224 (15%), Positives = 79/224 (35%), Gaps = 23/224 (10%)

Query: 20  IRKLLSNARSAP---TEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTK 76
           IR+ L+N                V+ + +E L  +D   +   A   +  I     +  +
Sbjct: 10  IREALANGEHLEKILIMAKYDESVLKKLIELL-DDDLWTVVKNAISIIMVIAKTREDLYE 68

Query: 77  VVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKH 136
            ++      +F  L  S +  + ++   A G +A +           +++IP+L    + 
Sbjct: 69  PMLK----KLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE------LVKSMIPVLFANYRI 118

Query: 137 AKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEG 196
                    ++ L       P      +   +     ++ S ++E    A   +  + E 
Sbjct: 119 GDEKTKINVSYALEEIAKANP----MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGEN 174

Query: 197 TNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD 240
           +   +   +     PR++ LL      V   A++ +V++A  +D
Sbjct: 175 SFKYVNPFL-----PRIINLLHDGDEIVRASAVEALVHLATLND 213

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 69.1 bits (168), Expect = 1e-12
 Identities = 80/483 (16%), Positives = 146/483 (30%), Gaps = 130/483 (26%)

Query: 8   DDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNI 67
           D   M  +A +   +L     S   E      +V +FVE ++R +Y  L   +    +  
Sbjct: 52  DHIIMSKDAVSGTLRLFWTLLSKQEE------MVQKFVEEVLRINYKFLM--SPIKTEQR 103

Query: 68  VSGTSEDTKVVID-----HGAVPIFVKLLAS---PSDDIREQAVCAL---GNV------- 109
               S  T++ I+     +    +F K   S   P   +R QA+  L    NV       
Sbjct: 104 --QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR-QALLELRPAKNVLIDGVLG 160

Query: 110 ------AADSARCRDLVL-----------------SEEALI-----------PLLTQLNK 135
                 A D   C    +                 S E ++           P  T  + 
Sbjct: 161 SGKTWVALDV--CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 136 HAKLSMLRIATWT--LSNFCAGKPKP----IFDQVRPALPALAQLVHSNDKEVMTDA--- 186
           H+    LRI +    L      KP      +   V+             + +   +A   
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ-------------NAKAW-NAFNL 264

Query: 187 -CRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRA-----LQTVVNIAAGDD 240
            C+ L      T    + V +         +        LT       L   ++    D 
Sbjct: 265 SCKILLT----TRF--KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318

Query: 241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVN 300
            +     N    P  L ++     +SI+     T  N    N + +  +I++ L     N
Sbjct: 319 PREVLTTN----PRRLSII----AESIRDGLA-TWDNWKHVNCDKLTTIIESSL-----N 364

Query: 301 LLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGL 360
           +L+ AE+  K +   ++    F      I  ++       L  +        V V +  L
Sbjct: 365 VLEPAEYR-KMFDRLSV----F-PPSAHIPTIL-------LSLIWFDVIKSDVMVVVNKL 411

Query: 361 EKILKVGEAEKNMDIAIGDVNQ-YAQLVEEAEGLEK--IENLRSHDNDEIHEKSVKILET 417
            K   V +  K   I+I  +       +E    L +  +++       +  +     L+ 
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471

Query: 418 YWC 420
           Y+ 
Sbjct: 472 YFY 474

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 59.4 bits (143), Expect = 1e-09
 Identities = 47/323 (14%), Positives = 94/323 (29%), Gaps = 28/323 (8%)

Query: 49  MREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGN 108
           + +   ++Q  A  A   +      +    + +  +   V   +            A+G 
Sbjct: 451 ILDSNKRVQEAACSAFATLEEEACTELVPYLAY-ILDTLVFAFSKYQHKNLLILYDAIGT 509

Query: 109 VAADSARCRDLVLSEEALIPLLTQL--NKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRP 166
           +A       +     + L+P L Q       +   L      LS+              P
Sbjct: 510 LADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEP 569

Query: 167 ALPALAQLVHSN-----------------DKEVMTDACRALFYLSEGTNDEIQAVI-EAG 208
                  LV                    DK+ M  A   L  L+EG    I+ ++  + 
Sbjct: 570 VYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSN 629

Query: 209 VCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIK 268
           +   + + +    P V   +   + ++        +          +LG  ++    S+ 
Sbjct: 630 ILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPC--IADFMPILGTNLNPEFISVC 687

Query: 269 TDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFD--IKNWAARAISNATFGGTH 326
            +A W I  I+      +Q  I   ++  LV ++        +    A  I    +    
Sbjct: 688 NNATWAIGEISIQMGIEMQPYIPM-VLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQ 746

Query: 327 EQIKYLVREGCIKPLCDLLLCAD 349
           E    L  +  I+P C  L    
Sbjct: 747 EVAPML--QQFIRPWCTSLRNIR 767

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 56.3 bits (135), Expect = 1e-08
 Identities = 60/406 (14%), Positives = 129/406 (31%), Gaps = 43/406 (10%)

Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPF---GVVPRFVEFLMREDYPQLQ 57
           + + + S+D N    A   ++K+  ++      +V+      ++P+F++F      P+++
Sbjct: 133 LCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSS-PKIR 191

Query: 58  FEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCR 117
             A   +   +   ++   + ID   +     L      ++R+    AL  +     R  
Sbjct: 192 SHAVACVNQFIISRTQALMLHIDS-FIENLFALAGDEEPEVRKNVCRALVMLL--EVRMD 248

Query: 118 DLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHS 177
            L+     ++  + Q  +    ++   A          +     D +   LP L  ++ +
Sbjct: 249 RLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLA--EQPICKDVLVRHLPKLIPVLVN 306

Query: 178 NDKEVMTD--------------------------ACRALFYLSEGTNDEIQAVIEAGVCP 211
             K    D                          +  AL  L+    DE+   I     P
Sbjct: 307 GMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHI----LP 362

Query: 212 RLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDA 271
            L ELL H    V    +  +  IA G        +    +P+L+  L       +++  
Sbjct: 363 LLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLP-ELIPHLIQCLSDKKAL-VRSIT 420

Query: 272 CWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKY 331
           CWT+S                 L+  L+  + ++   ++  A  A +        E + Y
Sbjct: 421 CWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPY 480

Query: 332 LVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAI 377
           L     +  L         + + +    +  +        N    I
Sbjct: 481 L--AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYI 524

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 44.4 bits (104), Expect = 6e-05
 Identities = 33/226 (14%), Positives = 69/226 (30%), Gaps = 24/226 (10%)

Query: 96  DDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAG 155
            ++R+ +  AL  +A      RD +L    ++PLL +L  H +  +       L     G
Sbjct: 335 WNLRKCSAAALDVLAN---VYRDELL--PHILPLLKELLFHHEWVVKESGILVLGAIAEG 389

Query: 156 KPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVE 215
             + +   +   +P L Q +      V +  C  L   +     +        +   L++
Sbjct: 390 CMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLK 449

Query: 216 LLGHPSPSVLTRALQTVVNIA--AGDDFQTQCIINCGALPYL------LGLLIHNHKKSI 267
            +   +  V   A      +   A  +            PYL      L      ++   
Sbjct: 450 RILDSNKRVQEAACSAFATLEEEACTELV----------PYLAYILDTLVFAFSKYQHKN 499

Query: 268 KTDACWTISNI-TAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNW 312
                  I  +  +      +      L+ PL+      + + K+ 
Sbjct: 500 LLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDL 545

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 57.1 bits (138), Expect = 2e-09
 Identities = 28/272 (10%), Positives = 67/272 (24%), Gaps = 55/272 (20%)

Query: 48  LMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALG 107
           L+ +     +  +A  L+                 AV + ++  +  +   R+     LG
Sbjct: 31  LLDDHNSLKRISSARVLQLRG-----------GQDAVRLAIEFCSDKNYIRRDIGAFILG 79

Query: 108 NVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPA 167
            +             +     L           +   A  + +  C   P          
Sbjct: 80  QIKICKK------CEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKI 129

Query: 168 LPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTR 227
           +             V      A+  ++           +    P L+ LL  P+  V   
Sbjct: 130 VEQSQITAFDKSTNVRRATAFAISVIN-----------DKATIPLLINLLKDPNGDVRNW 178

Query: 228 ALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQ 287
           A   +      +                + +L   + + ++ +A   +S           
Sbjct: 179 AAFAININKYDNS---------DIRDCFVEMLQDKN-EEVRIEAIIGLSYRK-------- 220

Query: 288 AVIDAGLIGPLVNLLQNAEFDIKNWAARAISN 319
              D  ++  L + L+     + +    A   
Sbjct: 221 ---DKRVLSVLCDELKKN--TVYDDIIEAAGE 247

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 36/257 (14%), Positives = 70/257 (27%), Gaps = 54/257 (21%)

Query: 97  DIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRI-ATWTLSNFCAG 155
             + +A    G              +++ L  LL   N     S+ RI +   L      
Sbjct: 5   YQKRKASKEYGLYNQCKKL------NDDELFRLLDDHN-----SLKRISSARVLQLR--- 50

Query: 156 KPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVE 215
                    + A+    +     +          L     G     +   +         
Sbjct: 51  -------GGQDAVRLAIEFCSDKNYIRRDIGAFIL-----GQIKICKKCEDNVFNILNNM 98

Query: 216 LLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTI 275
            L   S  V   A++     +     +   I +   +             +++    + I
Sbjct: 99  ALNDKSACVRATAIE-----STAQRCKKNPIYSPKIVEQSQITAFDKST-NVRRATAFAI 152

Query: 276 SNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVRE 335
           S I            D   I  L+NLL++   D++NWAA AI+   +             
Sbjct: 153 SVIN-----------DKATIPLLINLLKDPNGDVRNWAAFAININKYDN----------S 191

Query: 336 GCIKPLCDLLLCADPEI 352
                  ++L   + E+
Sbjct: 192 DIRDCFVEMLQDKNEEV 208

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 33/205 (16%), Positives = 63/205 (30%), Gaps = 46/205 (22%)

Query: 27  ARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPI 86
           A+      +    +V +       +    ++   A+A+  I            D   +P+
Sbjct: 116 AQRCKKNPIYSPKIVEQSQITA-FDKSTNVRRATAFAISVIN-----------DKATIPL 163

Query: 87  FVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIAT 146
            + LL  P+ D+R  A  A+     D++  RD        + +L   N+  ++     A 
Sbjct: 164 LINLLKDPNGDVRNWAAFAININKYDNSDIRD------CFVEMLQDKNEEVRIE----AI 213

Query: 147 WTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIE 206
             LS              +  L  L   +      V  D   A      G   +   +  
Sbjct: 214 IGLSYRKD----------KRVLSVLCDEL--KKNTVYDDIIEAA-----GELGDKTLL-- 254

Query: 207 AGVCPRLVELLGH-PSPSVLTRALQ 230
               P L  +L       ++T A+ 
Sbjct: 255 ----PVLDTMLYKFDDNEIITSAID 275

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 47/245 (19%), Positives = 74/245 (30%), Gaps = 57/245 (23%)

Query: 41  VPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIRE 100
           V  +++ L  +    ++  AA+AL  I            D  AV   +K L      +R 
Sbjct: 21  VEMYIKNLQDDS-YYVRRAAAYALGKIG-----------DERAVEPLIKALKDEDAWVRR 68

Query: 101 QAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPI 160
            A  ALG +  + A         E LI  L    K     + + A   L     G  +  
Sbjct: 69  AAADALGQIGDERAV--------EPLIKAL----KDEDGWVRQSAAVALGQI--GDER-- 112

Query: 161 FDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHP 220
                 A+  L + +   D  V   A  AL  +     DE +AV        L++ L   
Sbjct: 113 ------AVEPLIKALKDEDWFVRIAAAFALGEI----GDE-RAV------EPLIKALKDE 155

Query: 221 SPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA 280
              V   A   +  I  G +              +  L         +  A   +    +
Sbjct: 156 DGWVRQSAADALGEI--GGE---------RVRAAMEKLAETGT-GFARKVAVNYLETHKS 203

Query: 281 GNSEH 285
            N  H
Sbjct: 204 FNHHH 208

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 52.0 bits (125), Expect = 6e-08
 Identities = 40/238 (16%), Positives = 66/238 (27%), Gaps = 56/238 (23%)

Query: 80  DHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKL 139
           D   V +++K L   S  +R  A  ALG +  + A         E LI  L   +   + 
Sbjct: 17  DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAV--------EPLIKALKDEDAWVR- 67

Query: 140 SMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTND 199
              R A   L                 A+  L + +   D  V   A  AL     G   
Sbjct: 68  ---RAAADALGQI----------GDERAVEPLIKALKDEDGWVRQSAAVAL-----GQIG 109

Query: 200 EIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLL 259
           + +AV        L++ L      V   A   +  I               A+  L+  L
Sbjct: 110 DERAV------EPLIKALKDEDWFVRIAAAFALGEIGDER-----------AVEPLIKAL 152

Query: 260 IHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAI 317
                  ++  A   +  I               +   +  L +      +  A   +
Sbjct: 153 KDED-GWVRQSAADALGEIG-----------GERVRAAMEKLAETGTGFARKVAVNYL 198

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 35/245 (14%), Positives = 69/245 (28%), Gaps = 56/245 (22%)

Query: 119 LVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSN 178
            + ++   + +  +  +     + R A + L                 A+  L + +   
Sbjct: 13  PLRADPEKVEMYIKNLQDDSYYVRRAAAYALGKI----------GDERAVEPLIKALKDE 62

Query: 179 DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG 238
           D  V   A  AL     G   + +AV        L++ L      V   A   +  I   
Sbjct: 63  DAWVRRAAADAL-----GQIGDERAV------EPLIKALKDEDGWVRQSAAVALGQIGDE 111

Query: 239 DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPL 298
                       A+  L+  L       ++  A + +  I            D   + PL
Sbjct: 112 R-----------AVEPLIKALKDEDW-FVRIAAAFALGEIG-----------DERAVEPL 148

Query: 299 VNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLK 358
           +  L++ +  ++  AA A+              +  E     +  L          V + 
Sbjct: 149 IKALKDEDGWVRQSAADALGE------------IGGERVRAAMEKLAETGTGFARKVAVN 196

Query: 359 GLEKI 363
            LE  
Sbjct: 197 YLETH 201

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 55.0 bits (132), Expect = 2e-08
 Identities = 42/355 (11%), Positives = 112/355 (31%), Gaps = 29/355 (8%)

Query: 20  IRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVI 79
           +   ++ A+  P E++    V+P   +    +   ++++  A     +      +   + 
Sbjct: 224 VEACVNIAQLLPQEDLEAL-VMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGPE---IT 278

Query: 80  DHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKL 139
               VP F  L+     ++R  A   +     + +      +    ++P + +L   A  
Sbjct: 279 KTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQ 338

Query: 140 SMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSE--GT 197
            +       +        K     +   LP     +     EV  +    L  ++E  G 
Sbjct: 339 HVKSALASVIMGLSPILGKDNT--IEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI 396

Query: 198 NDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAA--GDDFQTQCIINCGALPYL 255
               Q+++     P +VEL       V    ++ +  +A   G +F  + +         
Sbjct: 397 RQLSQSLL-----PAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKL-----NSLC 446

Query: 256 LGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAAR 315
           +  L+  H  +I+  A   +  +     +         +I  ++ +  +  +  +     
Sbjct: 447 MAWLVD-HVYAIREAATSNLKKLVEKFGKEWAHAT---IIPKVLAMSGDPNYLHRMTTLF 502

Query: 316 AISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAE 370
            I+  +     +     +    +  +  +       +     K L+KI  + +  
Sbjct: 503 CINVLSEVCGQDITTKHM----LPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS 553

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 50.4 bits (120), Expect = 8e-07
 Identities = 26/200 (13%), Positives = 68/200 (34%), Gaps = 15/200 (7%)

Query: 40  VVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIR 99
           ++P  VE L  +   +++      +  +      +     D     + +  L      IR
Sbjct: 403 LLPAIVE-LAEDAKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLVDHVYAIR 458

Query: 100 EQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIAT-WTLSNFCAGKPK 158
           E A   L  +     +      +   +IP +  ++      + R+ T + ++       +
Sbjct: 459 EAATSNLKKLVEKFGKEW----AHATIIPKVLAMSGDPN-YLHRMTTLFCINVLSEVCGQ 513

Query: 159 PIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLG 218
            I  +    LP + ++       V  +  ++L  +    ++     +++ V P L +L  
Sbjct: 514 DITTKH--MLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS---TLQSEVKPILEKLTQ 568

Query: 219 HPSPSVLTRALQTVVNIAAG 238
                V   A + +  ++  
Sbjct: 569 DQDVDVKYFAQEALTVLSLA 588

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 51.9 bits (125), Expect = 6e-08
 Identities = 40/235 (17%), Positives = 65/235 (27%), Gaps = 56/235 (23%)

Query: 83  AVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSML 142
            V +++K L   S  +R  A  ALG +  + A         E LI  L    K     + 
Sbjct: 15  KVEMYIKNLQDDSYYVRRAAAYALGKIGDERAV--------EPLIKAL----KDEDAWVR 62

Query: 143 RIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQ 202
           R A   L                 A+  L + +   D  V   A  AL     G   + +
Sbjct: 63  RAAADALGQI----------GDERAVEPLIKALKDEDGWVRQSAAVAL-----GQIGDER 107

Query: 203 AVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHN 262
           AV        L++ L      V   A   +  I               A+  L+  L   
Sbjct: 108 AV------EPLIKALKDEDWFVRIAAAFALGEIGDER-----------AVEPLIKALKDE 150

Query: 263 HKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAI 317
               ++  A   +  I               +   +  L +      +  A   +
Sbjct: 151 D-GWVRQSAADALGEIG-----------GERVRAAMEKLAETGTGFARKVAVNYL 193

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 39/196 (19%), Positives = 63/196 (32%), Gaps = 45/196 (22%)

Query: 41  VPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIRE 100
           V  +++ L  +    ++  AA+AL  I            D  AV   +K L      +R 
Sbjct: 16  VEMYIKNLQDDS-YYVRRAAAYALGKIG-----------DERAVEPLIKALKDEDAWVRR 63

Query: 101 QAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPI 160
            A  ALG +  + A         E LI  L    K     + + A   L     G  +  
Sbjct: 64  AAADALGQIGDERAV--------EPLIKAL----KDEDGWVRQSAAVALGQI--GDER-- 107

Query: 161 FDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHP 220
                 A+  L + +   D  V   A  AL  + +      +  +E      L++ L   
Sbjct: 108 ------AVEPLIKALKDEDWFVRIAAAFALGEIGD------ERAVEP-----LIKALKDE 150

Query: 221 SPSVLTRALQTVVNIA 236
              V   A   +  I 
Sbjct: 151 DGWVRQSAADALGEIG 166

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 39/191 (20%), Positives = 59/191 (30%), Gaps = 45/191 (23%)

Query: 40  VVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIR 99
            V   ++ L  ED   ++  AA AL  I  G         D  AV   +K L      +R
Sbjct: 46  AVEPLIKALKDED-AWVRRAAADALGQI--G---------DERAVEPLIKALKDEDGWVR 93

Query: 100 EQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKP 159
           + A  ALG +  + A         E LI  L    K     +   A + L          
Sbjct: 94  QSAAVALGQIGDERAV--------EPLIKAL----KDEDWFVRIAAAFALGEIGD----- 136

Query: 160 IFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH 219
                  A+  L + +   D  V   A  AL  +        + V  A     + +L   
Sbjct: 137 -----ERAVEPLIKALKDEDGWVRQSAADALGEIGG------ERVRAA-----MEKLAET 180

Query: 220 PSPSVLTRALQ 230
            +      A+ 
Sbjct: 181 GTGFARKVAVN 191

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 53.3 bits (127), Expect = 1e-07
 Identities = 42/344 (12%), Positives = 104/344 (30%), Gaps = 43/344 (12%)

Query: 6   WSDDNNMQLEATTHIRK----LLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAA 61
            +  N    +   ++       L          ++   V+    + +  +++   +  A 
Sbjct: 333 LTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEP-VLEFVEQNITADNWRNREA-AV 390

Query: 62  WALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVL 121
            A  +I+ G  +  +    H A+P  + L+   S  ++E     +G +A       + + 
Sbjct: 391 MAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADS---VAESID 447

Query: 122 SEEALIPLLTQLNKHAKLS--MLRIATWTLSNFCAGKPKPIFDQVRPALPA-LAQLVHSN 178
            ++ L  ++       +    +    +WT+ N      +     +    PA +  L+ + 
Sbjct: 448 PQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAA 507

Query: 179 DKEVMTDACRALFYLSEGTNDEIQAVIEA--GVCPRLVELLGHPSPSVLTRALQTVVNIA 236
           ++       RA  +        +  ++E            +       L + +    N  
Sbjct: 508 NRIDNEFNARASAF------SALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQL 561

Query: 237 AGDDFQTQCIINCGALPYL----------------------LGLLIHNHKKSIKTDACWT 274
             +D Q+   +    L  L                        LL       I+ D  + 
Sbjct: 562 TLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYA 621

Query: 275 ISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAIS 318
           IS + A   +  +  ++      L+  L   +  +   A   I+
Sbjct: 622 ISALAASLGKGFEKYLET-FSPYLLKALNQVDSPVSITAVGFIA 664

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Length = 265

 Score = 51.4 bits (122), Expect = 2e-07
 Identities = 32/193 (16%), Positives = 61/193 (31%), Gaps = 13/193 (6%)

Query: 7   SDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKN 66
            DD   +L A   + ++L  A S     V+    +  F+   + ++  ++  +A  AL  
Sbjct: 44  EDDETTRLRAFVALGEILKRADSDLRMMVLER-HLDVFIN-ALSQENEKVTIKALRALGY 101

Query: 67  IVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALG--NVAADSARCRDLVLSEE 124
           +V      +K  +   A    V LL SP D +R + +  L       DS   R  +    
Sbjct: 102 LVKDVPMGSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLVRTYINELV 159

Query: 125 ALIPL------LTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVR-PALPALAQLVHS 177
               L                S        + +      +   + +   AL  L + +  
Sbjct: 160 VSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSF 219

Query: 178 NDKEVMTDACRAL 190
              E +      +
Sbjct: 220 PLLENVKIELLKI 232

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Length = 265

 Score = 41.0 bits (95), Expect = 5e-04
 Identities = 47/258 (18%), Positives = 84/258 (32%), Gaps = 36/258 (13%)

Query: 48  LMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALG 107
           L  ED    +  A  AL  I+     D ++++    + +F+  L+  ++ +  +A+ ALG
Sbjct: 41  LAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALG 100

Query: 108 NVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPA 167
            +  D        L        L  L + +   M+RI T  +      K +P+ D     
Sbjct: 101 YLVKDVPMGSKTFLK---AAKTLVSLLE-SPDDMMRIETIDV----LSKLQPLEDSKL-V 151

Query: 168 LPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTR 227
              + +LV S D             +   + D                         LT 
Sbjct: 152 RTYINELVVSPDLYTKVAGFCLFLNMLNSSAD----------------------SGHLTL 189

Query: 228 ALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQ 287
            L  + ++   D+      I   AL  L   L     +++K      IS I  G      
Sbjct: 190 ILDEIPSLLQNDNE----FIVELALDVLEKALSFPLLENVK-IELLKISRIVDGLVYREG 244

Query: 288 AVIDAGLIGPLVNLLQNA 305
           A I       + +L+ + 
Sbjct: 245 APIIRLKAKKVSDLIDSV 262

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 51.7 bits (123), Expect = 4e-07
 Identities = 48/338 (14%), Positives = 108/338 (31%), Gaps = 33/338 (9%)

Query: 40  VVPRFVEFLMRE-DYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDI 98
           +   +++ L R  +   +Q  +A  L    S T      +       IF+  ++      
Sbjct: 293 ITENYLQLLERSLNVEDVQIYSALVLVKTWSFTKLTCINLKQL--SEIFINAISRRIVPK 350

Query: 99  REQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLR--IATWTLSNFCAGK 156
            E +V AL  ++   A  + ++ S E+   +L  + K  K++     +    ++N     
Sbjct: 351 VEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLV-IMANLSTLP 408

Query: 157 PKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVEL 216
            +                      + +     A     +      + ++   +   L   
Sbjct: 409 EEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAK---EDILLFNEKYILRTELISFLKRE 465

Query: 217 LGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHN--HKKSIKTDACWT 274
           + + SP+   + ++ + NI    +F  Q +   GA+  +L  L +     + I+   C  
Sbjct: 466 MHNLSPNCKQQVVRIIYNITRSKNFIPQ-LAQQGAVKIILEYLANKQDIGEPIRILGCRA 524

Query: 275 ISNIT-AGNSEHIQAVID-AGLIGPLVNLLQNAEFDIKNW--------------AARAIS 318
           ++ +    N   I         I  L  LL  +     N               A  A++
Sbjct: 525 LTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALT 584

Query: 319 N----ATFGGTHEQIKYLVREGCIKPLCDLLLCADPEI 352
           N     T  G       +  +     + +L+L  +  +
Sbjct: 585 NLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPL 622

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 45.2 bits (106), Expect = 4e-05
 Identities = 29/175 (16%), Positives = 59/175 (33%), Gaps = 8/175 (4%)

Query: 9   DNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIV 68
           DN   L A T++    ++      + ++   V    +E LM ++   LQ      + N++
Sbjct: 575 DNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMM 634

Query: 69  SGTSEDTKVVIDHG------AVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLS 122
           S          +           I VKLL     + +        N+A         +L+
Sbjct: 635 SHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLT 694

Query: 123 EEALIPLLTQL--NKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLV 175
           ++ LI    Q+  ++   + + +             P    ++V P L    +L 
Sbjct: 695 KKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLK 749

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876

 Score = 49.5 bits (117), Expect = 2e-06
 Identities = 68/410 (16%), Positives = 132/410 (32%), Gaps = 43/410 (10%)

Query: 7   SDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKN 66
              NN++L AT  +   L   ++   +E     ++    E     D  +++  A   L  
Sbjct: 185 EPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVK 243

Query: 67  IVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAV-------------CALGNVAADS 113
           I+S   +  +  +      I ++ + S  D++  Q +                 + AA+ 
Sbjct: 244 IMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQ 303

Query: 114 ARCRDLVL------SEEALIPLLTQLNKH-------AKLSMLRIATWTLSNFCAGKPKPI 160
            R  +         + + L+P+LTQ              +  + A   L          I
Sbjct: 304 GRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI 363

Query: 161 FDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHP 220
              V   LP + + + + D      A  A   + EG        +     P L+EL+  P
Sbjct: 364 VPHV---LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP 420

Query: 221 SPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIH--NHKKSIKTDACWTISNI 278
           S  V   A  TV  I    +   +  IN   L  LL  LI   + +  + ++ CW  S++
Sbjct: 421 SVVVRDTAAWTVGRIC---ELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSL 477

Query: 279 TAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCI 338
                E     +      P    L ++   I                    +  +R    
Sbjct: 478 AEAAYEAAD--VADDQEEPATYCLSSSFELIVQKLLETTDRPD------GHQNNLRSSAY 529

Query: 339 KPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVE 388
           + L +++  +  +      K    I++  +    M+  I   +   Q  +
Sbjct: 530 ESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFND 579

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963

 Score = 48.3 bits (114), Expect = 4e-06
 Identities = 30/167 (17%), Positives = 58/167 (34%), Gaps = 21/167 (12%)

Query: 41  VPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIRE 100
               +  ++  D   L++  A+ +    +GT  ++ V        +    ++  +DD+R 
Sbjct: 543 ADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVK------RLLHVAVSDSNDDVRR 596

Query: 101 QAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPI 160
            AV ALG V         L+     +  ++  L+K     +     + L   CAGK    
Sbjct: 597 AAVIALGFV---------LLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ- 646

Query: 161 FDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEA 207
                 A+  L  L       V   A  AL  +     +++   +  
Sbjct: 647 -----SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVAD 688

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 23/148 (15%), Positives = 43/148 (29%), Gaps = 34/148 (22%)

Query: 83  AVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSML 142
            +      +A  +  +R     AL              + +EA  PLL  L  +    + 
Sbjct: 13  GLVPRGSHMADENKWVRRDVSTALSR------------MGDEAFEPLLESL-SNEDWRIR 59

Query: 143 RIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQ 202
             A W + NF              A+  L +L+  +   V + A R+L           +
Sbjct: 60  GAAAWIIGNFQD----------ERAVEPLIKLLEDDSGFVRSGAARSL-----EQIGGER 104

Query: 203 AVIEAGVCPRLVELLGHPSPSVLTRALQ 230
                     + +L    +      A+ 
Sbjct: 105 VR------AAMEKLAETGTGFARKVAVN 126

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 44.6 bits (106), Expect = 7e-06
 Identities = 23/143 (16%), Positives = 43/143 (30%), Gaps = 34/143 (23%)

Query: 48  LMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALG 107
            M ++   ++ + + AL  +               A    ++ L++    IR  A   +G
Sbjct: 20  HMADENKWVRRDVSTALSRM------------GDEAFEPLLESLSNEDWRIRGAAAWIIG 67

Query: 108 NVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPA 167
           N   + A         E LI LL    +     +   A  +L     G  +         
Sbjct: 68  NFQDERAV--------EPLIKLL----EDDSGFVRSGAARSLEQI--GGER--------V 105

Query: 168 LPALAQLVHSNDKEVMTDACRAL 190
             A+ +L  +        A   L
Sbjct: 106 RAAMEKLAETGTGFARKVAVNYL 128

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 618

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 43/284 (15%), Positives = 84/284 (29%), Gaps = 48/284 (16%)

Query: 83  AVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSML 142
                   L   +  ++  A+C LG +        ++      L   + +L K +   + 
Sbjct: 108 MTNCIKNDLNHSTQFVQGLALCTLGCM-----GSSEMC---RDLAGEVEKLLKTSNSYLR 159

Query: 143 RIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQ 202
           + A     +     P    + +   LPA   L++  +  V+  +   L  + E + D + 
Sbjct: 160 KKAALCAVHVIRKVP----ELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLA 215

Query: 203 AVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHN 262
                                 L R L+ ++      +     I +      +L LL   
Sbjct: 216 HFR--------------KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLL--- 258

Query: 263 HKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATF 322
                          +   + +  +A+ D      L  +  N E   KN     +     
Sbjct: 259 -------------RILGRNDDDSSEAMND-----ILAQVATNTET-SKNVGNAILYETVL 299

Query: 323 GGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKV 366
                + +  +R   I  L   LL  D  I  V L  L K ++ 
Sbjct: 300 TIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQT 343

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 38/259 (14%), Positives = 78/259 (30%), Gaps = 24/259 (9%)

Query: 48  LMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALG 107
           +  ++  +++  +    +++ S  +E    +     V + + LL      +R   V  L 
Sbjct: 90  ISNDEEEEVEENSTRQSEDLGSQFTE--IFIKQQENVTLLLSLLEEFDFHVRWPGVKLLT 147

Query: 108 NVAADSA-RCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRP 166
           ++      + + ++L     +  L  L   ++  +       L                 
Sbjct: 148 SLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFE 207

Query: 167 -ALPALAQLVH----SNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPS 221
            A   L  ++     S+   V+ D    L  L +  N       E     R+        
Sbjct: 208 NAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGD 267

Query: 222 P---------SVLTRALQTV---VNIAAGDDFQTQC---IINCGALPYLLGLLI-HNHKK 265
                     + L   LQ V   V+        + C   +  CG L  L  +L+      
Sbjct: 268 ENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPA 327

Query: 266 SIKTDACWTISNITAGNSE 284
            I T+   T+S +  G   
Sbjct: 328 DILTETINTVSEVIRGCQV 346

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	447
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.98
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.98
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.96
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.96
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.96
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.95
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.95
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.93
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.93
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.93
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.92
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.9
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.88
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.86
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.82
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.81
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.8
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.79
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.75
3grl_A	651	General vesicular transport factor P115; vesicle t	99.75
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.73
3grl_A	651	General vesicular transport factor P115; vesicle t	99.73
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.7
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.68
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.65
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.64
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.62
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.62
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.61
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.58
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.58
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.57
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.56
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.51
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.5
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.5
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.49
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.48
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.39
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.38
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.23
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.19
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	99.11
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	99.1
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	99.07
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	99.04
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.0
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.99
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.96
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.9
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.87
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.84
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.83
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.74
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.69
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.61
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.6
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.56
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.51
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.48
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.44
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.4
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.36
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.32
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.32
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.28
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	98.25
2x19_B	963	Importin-13; nuclear transport, protein transport;	98.04
2x19_B	963	Importin-13; nuclear transport, protein transport;	98.03
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	97.99
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	97.91
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	97.75
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.6
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.57
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.51
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.5
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.46
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.42
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.41
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.4
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	97.39
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	97.39
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	97.39
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	97.36
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	97.34
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	97.31
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	97.23
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	97.12
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	97.11
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	96.95
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	96.92
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	96.68
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	96.45
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	96.34
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	96.33
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	96.31
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	95.98
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	95.89
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	95.83
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	95.71
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	95.2
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	95.04
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	94.25
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	94.01
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	93.76
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	92.07
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	91.78
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	91.24
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	91.08
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	90.87
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	90.67
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	90.15
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	89.94
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	89.91
1vdy_A	140	Hypothetical protein (RAFL09-17-B18); structural g	89.85
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	89.36
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	86.21
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	85.78
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	84.22
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	83.52
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	81.14
2npp_B	449	PP2A, B subunit, serine/threonine-protein phosphat	81.07
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	81.01
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	80.43

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=2.4e-58  Score=444.13  Aligned_cols=438  Identities=43%  Similarity=0.681  Sum_probs=384.6

Q ss_pred             CcccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228            1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID   80 (447)
Q Consensus         1 lv~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (447)
                      +|+.++|+|++.|+.|+..++++++.+++++++.+++.|++|.|+++|++.+++++|..|+|+|+|++.++++.+..+++
T Consensus        62 ~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~  141 (510)
T 3ul1_B           62 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD  141 (510)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            46789999999999999999999998878889999999999999999987766899999999999999999999999999


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcccc----chhHHHHHHHHHHHhcCCC
Q 013228           81 HGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHA----KLSMLRIATWTLSNFCAGK  156 (447)
Q Consensus        81 ~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~----~~~~~~~a~~~L~~l~~~~  156 (447)
                      .|+++.|+.+|.++++++++.|+|+|+||+.+++.++..+.+.|++++++.++....    ...+++.++|++.+++.+.
T Consensus       142 ~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~  221 (510)
T 3ul1_B          142 GGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK  221 (510)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred             CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcc
Confidence            999999999999999999999999999999999999999999999999999995432    2357889999999999887


Q ss_pred             -CCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHh
Q 013228          157 -PKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI  235 (447)
Q Consensus       157 -~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l  235 (447)
                       +........+++|.|++++.+++++++..++++|++++..+.+..+.+.+.|+++.|+.+|.+++..++..++++++++
T Consensus       222 ~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl  301 (510)
T 3ul1_B          222 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI  301 (510)
T ss_dssp             SSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHh
Confidence             5555666689999999999999999999999999999998888888888999999999999999999999999999999


Q ss_pred             hcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHH
Q 013228          236 AAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAAR  315 (447)
Q Consensus       236 ~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~  315 (447)
                      +.+++.....+++.|+++.|+.++.++ +..+++.|+|+|+|++.+++++.+.+++.|++|.|+.++.+++.+++..|+|
T Consensus       302 ~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~  380 (510)
T 3ul1_B          302 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAW  380 (510)
T ss_dssp             TTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHH
T ss_pred             hcCCHHHHHHHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHH
Confidence            999998989999999999999999998 9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHH
Q 013228          316 AISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEK  395 (447)
Q Consensus       316 aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  395 (447)
                      +|+|++..++.++...+.+.|+++.|+++|++.|++++..++++|.++++.+++..       ..+.++..|++.||++.
T Consensus       381 aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~-------~~~~~~~~iee~ggl~~  453 (510)
T 3ul1_B          381 AITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-------ETEKLSIMIEECGGLDK  453 (510)
T ss_dssp             HHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT-------CHHHHHHHHHHTTHHHH
T ss_pred             HHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc-------chHHHHHHHHHcCcHHH
Confidence            99999998889999999999999999999999999999999999999999877643       45668999999999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhcCCCCCCC---CCCCC-CCcccCCC-CCCCCcc
Q 013228          396 IENLRSHDNDEIHEKSVKILETYWCGRVAGP---QPGNE-GEDALGSN-VITDGKV  446 (447)
Q Consensus       396 l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~---~~~~~-~~~~~~~~-~~~~~~~  446 (447)
                      |+.|++|++++|+++|..+|++||+.+++|+   .|+.. ..|.|+.+ .+|.||-
T Consensus       454 ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (510)
T 3ul1_B          454 IEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAPGTFN  509 (510)
T ss_dssp             HHHGGGCSSHHHHHHHHHHHHHHCC-------------------------------
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHCCCccccccccCCCCCccccccCCCCCCCCCCC
Confidence            9999999999999999999999999776665   56665 55777644 4566664

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=5.2e-57  Score=437.47  Aligned_cols=437  Identities=43%  Similarity=0.678  Sum_probs=383.5

Q ss_pred             cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228            2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH   81 (447)
Q Consensus         2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (447)
                      ++.++|+|++.++.|+..++++++.+.+++.+.+++.|++|.|+++|+..+++.++..|+|+|++++.++++.+..+++.
T Consensus        82 v~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~  161 (529)
T 3tpo_A           82 VKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDG  161 (529)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence            56789999999999999999999887778899999999999999999877668999999999999999999999999999


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcccc----chhHHHHHHHHHHHhcCCC-
Q 013228           82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHA----KLSMLRIATWTLSNFCAGK-  156 (447)
Q Consensus        82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~----~~~~~~~a~~~L~~l~~~~-  156 (447)
                      |+++.|+.++.++++.+++.|+|+|+||+.+++.++..+.+.|++++++.++....    ...+++.++|++++++.+. 
T Consensus       162 Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~  241 (529)
T 3tpo_A          162 GAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN  241 (529)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCT
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999999999999999999999999999999995432    2357889999999999887 


Q ss_pred             CCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhh
Q 013228          157 PKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIA  236 (447)
Q Consensus       157 ~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~  236 (447)
                      +........+++|.|+.++.+++++++..++|+|++++..+.+..+.+.+.|+++.|+.+|.+++..++..++++|++++
T Consensus       242 ~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~  321 (529)
T 3tpo_A          242 PAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV  321 (529)
T ss_dssp             TCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred             chhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHH
Confidence            55556667899999999999999999999999999999988888888889999999999999999999999999999999


Q ss_pred             cCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHH
Q 013228          237 AGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARA  316 (447)
Q Consensus       237 ~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~a  316 (447)
                      .+++.....+++.|+++.|+.++.++ +..++..|+|+|+|++.++++....+++.|++|.|+.++.+++.+++..|+|+
T Consensus       322 ~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~a  400 (529)
T 3tpo_A          322 TGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWA  400 (529)
T ss_dssp             TSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred             ccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHH
Confidence            99998889999999999999999998 99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHH
Q 013228          317 ISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKI  396 (447)
Q Consensus       317 L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l  396 (447)
                      |+|++..+++++...+.+.|+++.|+++|.+.|++++..++++|.++++.++...       ..+.++..|++.||++.|
T Consensus       401 L~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~-------~~~~~~~~iee~ggl~~i  473 (529)
T 3tpo_A          401 ITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-------ETEKLSIMIEECGGLDKI  473 (529)
T ss_dssp             HHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT-------CHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc-------ChHHHHHHHHHCCcHHHH
Confidence            9999998889999999999999999999999999999999999999999877643       456689999999999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHhcCCCCCCC---CCCCC-CCcccCCCC-CCCCcc
Q 013228          397 ENLRSHDNDEIHEKSVKILETYWCGRVAGP---QPGNE-GEDALGSNV-ITDGKV  446 (447)
Q Consensus       397 ~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~---~~~~~-~~~~~~~~~-~~~~~~  446 (447)
                      +.|++|+|++|+++|..+|++||.++++|+   .|+.. ..|.|+.++ +|.||-
T Consensus       474 e~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  528 (529)
T 3tpo_A          474 EALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAPGTFN  528 (529)
T ss_dssp             TGGGGCSSHHHHHHHHHHHHHHC--------------------------------
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHCCCccccccccCCCCCCcccccCCCCCCCCCCC
Confidence            999999999999999999999998766655   56666 668877544 556663

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=7.2e-50  Score=389.05  Aligned_cols=423  Identities=74%  Similarity=1.128  Sum_probs=386.7

Q ss_pred             cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228            2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH   81 (447)
Q Consensus         2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (447)
                      ++.|.++++.++..|++.|+++++....+....+++.|++|.|+++|++++++.++..|+++|++++.++++.+..+++.
T Consensus        80 v~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~  159 (528)
T 4b8j_A           80 IGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDH  159 (528)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhC
Confidence            56788999999999999999999886457788899999999999999988658999999999999999889999999999


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCCh
Q 013228           82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIF  161 (447)
Q Consensus        82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~  161 (447)
                      |+++.|+.++.++++.++..|+|+|++++.+.+..+..+...|++++++.++..+.+..++..++|+|.+++...+....
T Consensus       160 g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~  239 (528)
T 4b8j_A          160 GAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSF  239 (528)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCH
T ss_pred             CcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcH
Confidence            99999999999999999999999999999998888999999999999999997777899999999999999998777777


Q ss_pred             hhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChh
Q 013228          162 DQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDF  241 (447)
Q Consensus       162 ~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~  241 (447)
                      ....+++|.|+.++.++++.++..++++|++++...+...+.+.+.|+++.|+.+|.++++.++..|+++|++++.+++.
T Consensus       240 ~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~  319 (528)
T 4b8j_A          240 EQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDA  319 (528)
T ss_dssp             HHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHH
Confidence            77899999999999999999999999999999988888778889999999999999999999999999999999998888


Q ss_pred             hHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhc
Q 013228          242 QTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNAT  321 (447)
Q Consensus       242 ~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~  321 (447)
                      ....+++.|+++.|+.+|.++.+..++..|+|+|+|++.++++.++.+++.|+++.|+.++.++++.++..|+++|++++
T Consensus       320 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~  399 (528)
T 4b8j_A          320 QTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNAT  399 (528)
T ss_dssp             HHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            88889999999999999987657899999999999999988888999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhc
Q 013228          322 FGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRS  401 (447)
Q Consensus       322 ~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~  401 (447)
                      ..++++....+.+.|+++.|+.++.+.+++++..++++|.+++..++.......  ...++++..+.+.|+++.|..+++
T Consensus       400 ~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~l~~L~~  477 (528)
T 4b8j_A          400 SGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAA--GDVNVFSQMIDEAEGLEKIENLQS  477 (528)
T ss_dssp             HHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHT--CSCCHHHHHHHHTTHHHHHHHGGG
T ss_pred             cCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhccc--ccccHHHHHHHHCCcHHHHHHHHc
Confidence            987789999999999999999999999999999999999999998766432211  245668999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCC
Q 013228          402 HDNDEIHEKSVKILETYWCGRVAGP  426 (447)
Q Consensus       402 ~~~~~v~~~a~~~l~~~~~~~~~~~  426 (447)
                      +++++++++|..++++||+.+++|+
T Consensus       478 ~~~~~v~~~a~~il~~~~~~e~~~~  502 (528)
T 4b8j_A          478 HDNNEIYEKAVKILEAYWMDEEDDT  502 (528)
T ss_dssp             CSSHHHHHHHHHHHHHHCC------
T ss_pred             CCCHHHHHHHHHHHHHHCCCccccc
Confidence            9999999999999999999877766

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=1.5e-47  Score=372.46  Aligned_cols=421  Identities=52%  Similarity=0.765  Sum_probs=381.2

Q ss_pred             cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228            2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH   81 (447)
Q Consensus         2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (447)
                      ++.|+++++.++..|++.|+++++....+....+++.|++|.|+++|.+++++.++..|+++|++++.++++.+..+++.
T Consensus        93 v~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~  172 (530)
T 1wa5_B           93 TQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDA  172 (530)
T ss_dssp             HHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHC
Confidence            56788999999999999999998875456678889999999999999998338999999999999999888999999999


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCC-CCCC
Q 013228           82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK-PKPI  160 (447)
Q Consensus        82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~  160 (447)
                      |+++.|+.+|.++++.++..|+|+|++++.+.+..+..+...|+++.++.++ .+.+..++..++|+|.+++... +...
T Consensus       173 g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~  251 (530)
T 1wa5_B          173 DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQPD  251 (530)
T ss_dssp             TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhCCCCCCCc
Confidence            9999999999999999999999999999999888899999999999999999 5578899999999999999886 6666


Q ss_pred             hhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCCh
Q 013228          161 FDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD  240 (447)
Q Consensus       161 ~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~  240 (447)
                      .....+++|.|+.++.++++.++..++++|++++...+.....+.+.|+++.|+.++.++++.++..|+++|++++.+++
T Consensus       252 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~  331 (530)
T 1wa5_B          252 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND  331 (530)
T ss_dssp             HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCH
Confidence            77778999999999999999999999999999998877777788889999999999999999999999999999999888


Q ss_pred             hhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHh
Q 013228          241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNA  320 (447)
Q Consensus       241 ~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l  320 (447)
                      .....+++.|+++.|+.+|.++ +..++..|+|+|+|++.++++..+.+++.|+++.|+.++.++++.++..|+++|+++
T Consensus       332 ~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l  410 (530)
T 1wa5_B          332 LQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNA  410 (530)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            8888889999999999999999 999999999999999988888888999999999999999999999999999999999


Q ss_pred             cCCCCH--HHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHH
Q 013228          321 TFGGTH--EQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIEN  398 (447)
Q Consensus       321 ~~~~~~--~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~  398 (447)
                      +..+++  +....+.+.|+++.|+.++.+.+++++..++++|.+++..++......  .+..++++..+.+.|+++.|..
T Consensus       411 ~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~--~~~~~~~~~~l~~~g~~~~L~~  488 (530)
T 1wa5_B          411 SSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEAR--GLNINENADFIEKAGGMEKIFN  488 (530)
T ss_dssp             HHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHH--TCSSCHHHHHHHHTTHHHHHHG
T ss_pred             HhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcc--cccccHHHHHHHHcCcHHHHHH
Confidence            987666  778888999999999999999999999999999999998776532110  0134568999999999999999


Q ss_pred             HhcCCCHHHHHHHHHHHHHhcCCCCCCC
Q 013228          399 LRSHDNDEIHEKSVKILETYWCGRVAGP  426 (447)
Q Consensus       399 l~~~~~~~v~~~a~~~l~~~~~~~~~~~  426 (447)
                      |++++++++++.|..+|++||..+++|+
T Consensus       489 L~~~~~~~v~~~a~~il~~~~~~~~~~~  516 (530)
T 1wa5_B          489 CQQNENDKIYEKAYKIIETYFGEEEDAV  516 (530)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHSSSCC---
T ss_pred             HHcCCCHHHHHHHHHHHHHHCCcccccc
Confidence            9999999999999999999998777653

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=4.4e-46  Score=355.76  Aligned_cols=422  Identities=54%  Similarity=0.828  Sum_probs=376.4

Q ss_pred             cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhcc-CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228            2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPF-GVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID   80 (447)
Q Consensus         2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (447)
                      ++.++++++.++..|+..|+++++....+..+.+++. |+++.|+++|++++++.++..|+++|.+++.++++....+++
T Consensus        26 ~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  105 (450)
T 2jdq_A           26 IEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQ  105 (450)
T ss_dssp             HHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence            4567899999999999999999874335556677777 999999999999833899999999999999988888888899


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCC-CCC
Q 013228           81 HGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK-PKP  159 (447)
Q Consensus        81 ~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~  159 (447)
                      .|+++.|+.++.++++.++..++++|++++.+.+..+..+.+.|+++.++.++..+.+..++..++|+|.+++... +..
T Consensus       106 ~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~  185 (450)
T 2jdq_A          106 AGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP  185 (450)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred             CCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999999999999999999988888989899999999999965578899999999999999876 555


Q ss_pred             ChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCC
Q 013228          160 IFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGD  239 (447)
Q Consensus       160 ~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~  239 (447)
                      ......+++|.++.++.++++.++..++++|.+++...+.....+.+.|+++.|+.++.++++.++..++++|++++.+.
T Consensus       186 ~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  265 (450)
T 2jdq_A          186 EFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGD  265 (450)
T ss_dssp             CGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             CHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCC
Confidence            55566899999999999999999999999999999877777777888999999999999999999999999999999988


Q ss_pred             hhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHH
Q 013228          240 DFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISN  319 (447)
Q Consensus       240 ~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~  319 (447)
                      +...+.+++.|+++.++.++.++ ++.++..|+|+|+|++.++++..+.+++.|+++.|+.++.++++++|..|+++|++
T Consensus       266 ~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~  344 (450)
T 2jdq_A          266 DIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITN  344 (450)
T ss_dssp             HHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            88878888999999999999998 99999999999999998888888889999999999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHH
Q 013228          320 ATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENL  399 (447)
Q Consensus       320 l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l  399 (447)
                      ++..++++....+.+.|+++.|+.++.+++++++..++++|.+++..++......  ....++|+..+.+.|+++.|..+
T Consensus       345 l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~--~~~~~~~~~~l~~~g~~~~l~~l  422 (450)
T 2jdq_A          345 ATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRN--GTGINPYCALIEEAYGLDKIEFL  422 (450)
T ss_dssp             HHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHS--CSCCCHHHHHHHHHHCHHHHHHH
T ss_pred             HHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhcc--ccchhHHHHHHHHcCcHHHHHHH
Confidence            9987677888888899999999999999999999999999999998766532110  01245689999999999999999


Q ss_pred             hcCCCHHHHHHHHHHHHHhcCCCCCCC
Q 013228          400 RSHDNDEIHEKSVKILETYWCGRVAGP  426 (447)
Q Consensus       400 ~~~~~~~v~~~a~~~l~~~~~~~~~~~  426 (447)
                      ++++++++++.|..++++||+++++++
T Consensus       423 ~~~~~~~v~~~a~~~l~~~~~~~~~~~  449 (450)
T 2jdq_A          423 QSHENQEIYQKAFDLIEHYFGTEDEDS  449 (450)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHCCC----
T ss_pred             HcCCCHHHHHHHHHHHHHHCCcccccC
Confidence            999999999999999999998777654

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=1.3e-40  Score=320.55  Aligned_cols=364  Identities=28%  Similarity=0.405  Sum_probs=319.5

Q ss_pred             CcccccC-CCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHH
Q 013228            1 MVAGVWS-DDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVI   79 (447)
Q Consensus         1 lv~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~   79 (447)
                      ||++|.+ +++.+|+.|+|+|.++++++ +++.+.+++.|++|.|+++|++++ +++++.|+|+|++++.++++.+..+.
T Consensus       105 LV~lL~~~~~~~lq~~Aa~aL~nias~~-~e~~~~vv~~GaIp~Lv~lL~s~~-~~v~e~A~~aL~nLa~d~~~~r~~v~  182 (510)
T 3ul1_B          105 FVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVI  182 (510)
T ss_dssp             HHHHTTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            3567764 56899999999999999875 777889999999999999999999 99999999999999998899999999


Q ss_pred             hCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcC
Q 013228           80 DHGAVPIFVKLLASPS-----DDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCA  154 (447)
Q Consensus        80 ~~~~i~~L~~ll~~~~-----~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~  154 (447)
                      +.|++++|+.++.+++     ..+++.++|++++++.............++++.|+.++ .+.+.+++..++|+|.+++.
T Consensus       183 ~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A~~aL~~L~~  261 (510)
T 3ul1_B          183 KHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAISYLTD  261 (510)
T ss_dssp             HTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTS
T ss_pred             HcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHH-hcCCHHHHHHHHHHHHHHhh
Confidence            9999999999998743     46788999999999976654444444456789999999 77888999999999999998


Q ss_pred             CCCCCCh-hhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHH
Q 013228          155 GKPKPIF-DQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVV  233 (447)
Q Consensus       155 ~~~~~~~-~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~  233 (447)
                      ....... ....+++|.|+.++.+++..++..++++|+|++..++.....+.+.|+++.|+.+|.++++.++..|+++|+
T Consensus       262 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~  341 (510)
T 3ul1_B          262 GPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS  341 (510)
T ss_dssp             SCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHH
T ss_pred             chhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHH
Confidence            7633222 234789999999999999999999999999999988888888999999999999999999999999999999


Q ss_pred             HhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCchhHHHH
Q 013228          234 NIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA-GNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNW  312 (447)
Q Consensus       234 ~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~  312 (447)
                      |++.+++.....+.+.|+++.|+.++.++ +..++++|+|+|+|++. ++.+++..+++.|+++.|+++|.++|++++..
T Consensus       342 nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~  420 (510)
T 3ul1_B          342 NITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV  420 (510)
T ss_dssp             HHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHH
T ss_pred             HHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHH
Confidence            99999999999999999999999999999 99999999999999997 57788899999999999999999999999999


Q ss_pred             HHHHHHHhcCC----C-CHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhh
Q 013228          313 AARAISNATFG----G-THEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGE  368 (447)
Q Consensus       313 a~~aL~~l~~~----~-~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~  368 (447)
                      ++++|.|+...    + .......+.+.|+++.|..+..+++.+++..|..+|.+++...+
T Consensus       421 ~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~  481 (510)
T 3ul1_B          421 ILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEE  481 (510)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCcc
Confidence            99999999752    1 23344556678999999999999999999999999999986543

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=3.8e-40  Score=319.28  Aligned_cols=363  Identities=28%  Similarity=0.401  Sum_probs=319.1

Q ss_pred             ccccc-CCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228            2 VAGVW-SDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID   80 (447)
Q Consensus         2 v~~l~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (447)
                      |++|. ++++.++..|+|+|.++++++ +.....+++.|++|.|+.+|.+++ +++++.|+|+|++++.++++++..+.+
T Consensus       125 v~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~-~~v~e~A~~aL~nLa~~~~~~r~~i~~  202 (529)
T 3tpo_A          125 VSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGAGSAFRDLVIK  202 (529)
T ss_dssp             HHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence            55665 456999999999999999885 667788999999999999999999 999999999999999989999999999


Q ss_pred             CCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCC
Q 013228           81 HGAVPIFVKLLASPS-----DDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAG  155 (447)
Q Consensus        81 ~~~i~~L~~ll~~~~-----~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  155 (447)
                      .|++++|+.++..++     ..+.+.++|++++++.+...........++++.|+.++ .+.+.+++..++|+|.+++..
T Consensus       203 ~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~a~~aL~~l~~~  281 (529)
T 3tpo_A          203 HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAISYLTDG  281 (529)
T ss_dssp             TTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHHHHHHSS
T ss_pred             cCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh-cCCcHHHHHHHHHHHHHhhhh
Confidence            999999999998643     46788999999999977654444444556789999999 788899999999999999987


Q ss_pred             CCCCCh-hhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHH
Q 013228          156 KPKPIF-DQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVN  234 (447)
Q Consensus       156 ~~~~~~-~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~  234 (447)
                      ...... ....+++|.|+.++.++++.++..++++|+|++..++.....+.+.|+++.|+.+|.++++.++..|+++|+|
T Consensus       282 ~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~n  361 (529)
T 3tpo_A          282 PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSN  361 (529)
T ss_dssp             CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            633222 2347899999999999999999999999999999888888889999999999999999999999999999999


Q ss_pred             hhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCchhHHHHH
Q 013228          235 IAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA-GNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWA  313 (447)
Q Consensus       235 l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a  313 (447)
                      ++.+++.....+++.|+++.++.++.++ +..++.+|+|+|+|++. ++++++..+++.|+++.|+++|.++|++++..+
T Consensus       362 l~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~  440 (529)
T 3tpo_A          362 ITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVI  440 (529)
T ss_dssp             HHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred             HhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHH
Confidence            9999998989999999999999999999 99999999999999987 578888999999999999999999999999999


Q ss_pred             HHHHHHhcCC----CC-HHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhh
Q 013228          314 ARAISNATFG----GT-HEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGE  368 (447)
Q Consensus       314 ~~aL~~l~~~----~~-~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~  368 (447)
                      +++|.|+...    +. ......+.+.|+++.|..+..+++.+++..|..+|.+++...+
T Consensus       441 L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~  500 (529)
T 3tpo_A          441 LDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEE  500 (529)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCcc
Confidence            9999999742    12 3344566788999999999999999999999999999886443

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=2.3e-39  Score=307.22  Aligned_cols=365  Identities=18%  Similarity=0.208  Sum_probs=307.3

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 013228           40 VVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDL  119 (447)
Q Consensus        40 ~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~  119 (447)
                      .+|.|+++|++++ ++++..|+++|.+++.+++..+..+.+.|+++.|+.+|+++++.++..|+++|.||+.+++..+..
T Consensus         3 ~l~~lv~~L~s~~-~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~   81 (457)
T 1xm9_A            3 TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            5899999999999 899999999999999877788889999999999999999999999999999999999987889999


Q ss_pred             HHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhc--------c--------CChhHH
Q 013228          120 VLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVH--------S--------NDKEVM  183 (447)
Q Consensus       120 ~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~--------~--------~~~~v~  183 (447)
                      +.+.|++++++.+|..+.+.++++.++|+|++++... ..+.....+++|.|+.++.        +        .++.+.
T Consensus        82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~-~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~  160 (457)
T 1xm9_A           82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD-ELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF  160 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS-STHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred             HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCH-HhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence            9999999999999954778899999999999999984 4444333499999999993        2        246677


Q ss_pred             HHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHhcCC------CCchhHhHHHHHHHHhhcCC-----------------
Q 013228          184 TDACRALFYLSEGTNDEIQAVIEA-GVCPRLVELLGH------PSPSVLTRALQTVVNIAAGD-----------------  239 (447)
Q Consensus       184 ~~al~~l~~l~~~~~~~~~~~~~~-~~~~~L~~lL~~------~~~~v~~~a~~~l~~l~~~~-----------------  239 (447)
                      ..++|+|+|++.. ++..+.+.+. |+++.|+.+|.+      .+..++..++.++.+++...                 
T Consensus       161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~  239 (457)
T 1xm9_A          161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence            7999999999987 5666778887 999999999975      45678888888899886311                 


Q ss_pred             ---------------------------------hhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHH--
Q 013228          240 ---------------------------------DFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSE--  284 (447)
Q Consensus       240 ---------------------------------~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~--  284 (447)
                                                       +...+.+++.++++.++.+|.++.++.++..|+|+|+|++.++..  
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~  319 (457)
T 1xm9_A          240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence                                             112234556677889999998775789999999999999985422  


Q ss_pred             -HH-HHHH-HcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCH------HHHHH
Q 013228          285 -HI-QAVI-DAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADP------EIVTV  355 (447)
Q Consensus       285 -~~-~~l~-~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~------~~~~~  355 (447)
                       .. +..+ +.|++|.|++++.+++.+++..|+|+|.|++..  ++ ...++..|+++.|+++|...++      ++...
T Consensus       320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~--~~-~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~  396 (457)
T 1xm9_A          320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--PL-LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSS  396 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--GG-GHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred             HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC--HH-HHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHH
Confidence             22 3444 589999999999999999999999999999984  23 3445566899999999998643      68889


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCC-CHHHHHHHHHHHHHhcCCCC
Q 013228          356 FLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHD-NDEIHEKSVKILETYWCGRV  423 (447)
Q Consensus       356 a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~-~~~v~~~a~~~l~~~~~~~~  423 (447)
                      ++++|.+++..+..             ....+.+.|+++.|.+|+.++ ++++++.|.++|.+||..++
T Consensus       397 ~l~~l~ni~~~~~~-------------~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~  452 (457)
T 1xm9_A          397 ACYTVRNLMASQPQ-------------LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE  452 (457)
T ss_dssp             HHHHHHHHHTTCTH-------------HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred             HHHHHHHHHhcCHH-------------HHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence            99999999865433             478888999999999999999 99999999999999997665

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=2.5e-39  Score=317.60  Aligned_cols=362  Identities=15%  Similarity=0.114  Sum_probs=311.7

Q ss_pred             cccccCC--CHHHHHHHHHHHHHHHccCCCCchhhhh-ccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh------
Q 013228            2 VAGVWSD--DNNMQLEATTHIRKLLSNARSAPTEEVI-PFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTS------   72 (447)
Q Consensus         2 v~~l~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~------   72 (447)
                      +++|.++  |++++..|+++|..++..  ++....++ +.|++|.|+++|++++ +.++..|+++|+|++.+++      
T Consensus       383 ~~lL~~~~~d~~v~~~AveaLayLS~~--~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d~q~~~~  459 (810)
T 3now_A          383 RRFLIKPGKDKDIRRWAADGLAYLTLD--AECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYEKQEMLP  459 (810)
T ss_dssp             HHHHHCSSCCSSHHHHHHHHHHHHTTS--HHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSCCCCCCC
T ss_pred             HHHhcCCCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCchhhhhhH
Confidence            3456676  889999999999999876  44455555 6799999999999988 8999999999999998542      


Q ss_pred             -----------------------hhH---HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCH
Q 013228           73 -----------------------EDT---KVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEAL  126 (447)
Q Consensus        73 -----------------------~~~---~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l  126 (447)
                                             ..+   +.+++.|+++.|+.++.++++.+++.|+|+|+||+.+ +.++..+.+.|++
T Consensus       460 ~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~Gai  538 (810)
T 3now_A          460 EMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGGV  538 (810)
T ss_dssp             SCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHH
T ss_pred             HHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCH
Confidence                                   112   6788999999999999999999999999999999975 5589999999999


Q ss_pred             HHHHHHhccccchhHHHHHHHHHHHhcCCC-CCCCh--hhHhhhHHHHHHhhccCCh-hHHHHHHHHHHHhccCCcHHHH
Q 013228          127 IPLLTQLNKHAKLSMLRIATWTLSNFCAGK-PKPIF--DQVRPALPALAQLVHSNDK-EVMTDACRALFYLSEGTNDEIQ  202 (447)
Q Consensus       127 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~--~~~~~~l~~l~~ll~~~~~-~v~~~al~~l~~l~~~~~~~~~  202 (447)
                      ++|+.+| .+.+...++.|+|+|.+++... +....  ....+++|.|+.+|.++.. ..+..++++|.|++..+++..+
T Consensus       539 p~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~  617 (810)
T 3now_A          539 KALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQ  617 (810)
T ss_dssp             HHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHH
Confidence            9999999 5566788999999999998754 21111  1235689999999986633 4457899999999998877778


Q ss_pred             HHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHh-cCChHHHHHhhccCCchhHHHHHHHHHHHHhcC
Q 013228          203 AVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIIN-CGALPYLLGLLIHNHKKSIKTDACWTISNITAG  281 (447)
Q Consensus       203 ~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~  281 (447)
                      .+++.|+++.|+.++.++++.++..|+++|+|++.+.+.. ..+.+ .|.++.|+.++.++ +..++..|+|+|+|++.+
T Consensus       618 ~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~-~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALanLt~~  695 (810)
T 3now_A          618 RIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVI-KMFEGNNDRVKFLALLCEDE-DEETATACAGALAIITSV  695 (810)
T ss_dssp             HHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHH-HHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHH-HHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCC
Confidence            8999999999999999999999999999999999876644 44555 78999999999998 999999999999999997


Q ss_pred             CHHHHHHHHH-cCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCC---CHHHHHHHH
Q 013228          282 NSEHIQAVID-AGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCA---DPEIVTVFL  357 (447)
Q Consensus       282 ~~~~~~~l~~-~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~---~~~~~~~a~  357 (447)
                      ++..++.+++ .|+++.|+.++.+++.+++..|+|++.|++.. +++....+.+.|+++.|+.++..+   +++++..|+
T Consensus       696 s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al  774 (810)
T 3now_A          696 SVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVAT  774 (810)
T ss_dssp             CHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHH
Confidence            7888999998 89999999999999999999999999999985 678899999999999999999765   689999999


Q ss_pred             HHHHHHHHhhhhhh
Q 013228          358 KGLEKILKVGEAEK  371 (447)
Q Consensus       358 ~~l~~l~~~~~~~~  371 (447)
                      ++|.++.+.+...+
T Consensus       775 ~aL~~ll~~g~~~~  788 (810)
T 3now_A          775 QCLAAAERYRIIER  788 (810)
T ss_dssp             HHHHHHHHHHTC--
T ss_pred             HHHHHHHhCCCccC
Confidence            99999998876543

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=8.5e-39  Score=297.77  Aligned_cols=359  Identities=18%  Similarity=0.209  Sum_probs=294.9

Q ss_pred             cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCC-----------HHHHHHHHHHHHHHcCC
Q 013228            2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDY-----------PQLQFEAAWALKNIVSG   70 (447)
Q Consensus         2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~-----------~~v~~~a~~~L~~l~~~   70 (447)
                      ++.+.+.|++   ...+.|..+...  .+.+..+++.|++|.|+++|+..+.           ++++.+|+|+|.|++.+
T Consensus        38 ~~~~~~~~~~---~~~~~ll~~~~~--~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~  112 (458)
T 3nmz_A           38 LSMLGTHDKD---DMSRTLLAMSSS--QDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHS  112 (458)
T ss_dssp             -------CCH---HHHHHHHHHHSS--TTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCHH---HHHHHHHHHHcC--CcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHcc
Confidence            4566777765   355566666554  4556889999999999999987532           69999999999999998


Q ss_pred             ChhhHHHHHhCCCh----------HHHHHhhCCCC--HH-----HHH-------HHHHHHHHhhcCChhHHHHHHhcCCH
Q 013228           71 TSEDTKVVIDHGAV----------PIFVKLLASPS--DD-----IRE-------QAVCALGNVAADSARCRDLVLSEEAL  126 (447)
Q Consensus        71 ~~~~~~~~~~~~~i----------~~L~~ll~~~~--~~-----i~~-------~a~~~L~~l~~~~~~~~~~~~~~~~l  126 (447)
                      .++......+.+++          +.+++++.+..  .+     +++       +|+|+|+|++.+ +.+|+.+.+.|++
T Consensus       113 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~i~~~G~l  191 (458)
T 3nmz_A          113 QPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGL  191 (458)
T ss_dssp             SCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHHHHHTTHH
T ss_pred             CcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHCCCH
Confidence            88888888887777          66667676532  22     444       999999999876 7789999999999


Q ss_pred             HHHHHHhcc----------ccchhHHHHHHHHHHHhcCCCCCCChhh--HhhhHHHHHHhhccCChhHHHHHHHHHHHhc
Q 013228          127 IPLLTQLNK----------HAKLSMLRIATWTLSNFCAGKPKPIFDQ--VRPALPALAQLVHSNDKEVMTDACRALFYLS  194 (447)
Q Consensus       127 ~~l~~~l~~----------~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~  194 (447)
                      ++|+.+|..          +.+..+++.|+|+|.+|+.+.+......  ..+++|.|+.+|++++++++..++++|+|++
T Consensus       192 ~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs  271 (458)
T 3nmz_A          192 QAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLS  271 (458)
T ss_dssp             HHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence            999999942          2356789999999999998763233233  3567999999999999999999999999999


Q ss_pred             cC-CcHHHHHHHHhCcHHHHHHhc-CCCCchhHhHHHHHHHHhhcCChhhHHHHH-hcCChHHHHHhhccCCch---hHH
Q 013228          195 EG-TNDEIQAVIEAGVCPRLVELL-GHPSPSVLTRALQTVVNIAAGDDFQTQCII-NCGALPYLLGLLIHNHKK---SIK  268 (447)
Q Consensus       195 ~~-~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~~~l~~l~~~l~~~~~~---~v~  268 (447)
                      .. ++.....+.+.|+++.|+.+| .+.+..++..++.+|+||+.+++.....+. ..|+++.|+.+|.++.+.   .++
T Consensus       272 ~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~  351 (458)
T 3nmz_A          272 WRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAII  351 (458)
T ss_dssp             SSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHH
T ss_pred             cCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHH
Confidence            75 455667788999999999975 567889999999999999985554555565 789999999999877232   599


Q ss_pred             HHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhc
Q 013228          269 TDACWTISNITA---GNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLL  345 (447)
Q Consensus       269 ~~a~~~l~nl~~---~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll  345 (447)
                      ..|+|+|.|++.   .++++++.+.+.|+++.|+.+|.+++..+++.|+++|.|++.. ++++...+.+.|+++.|++++
T Consensus       352 ~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~I~~Lv~LL  430 (458)
T 3nmz_A          352 ESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLI  430 (458)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHHTHHHHHHTTT
T ss_pred             HHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHH
Confidence            999999999997   7889999999999999999999999999999999999999964 688899999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHHHHhh
Q 013228          346 LCADPEIVTVFLKGLEKILKVG  367 (447)
Q Consensus       346 ~~~~~~~~~~a~~~l~~l~~~~  367 (447)
                      .++++.+++.|+++|.+|+...
T Consensus       431 ~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          431 HSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             TCSSHHHHHHHHHHHHHHHTCC
T ss_pred             hCCCHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999764

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=8e-39  Score=314.07  Aligned_cols=400  Identities=15%  Similarity=0.116  Sum_probs=332.2

Q ss_pred             cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccC----CHHHHHHhhcCC--CCHHHHHHHHHHHHHHcCCChhhH
Q 013228            2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFG----VVPRFVEFLMRE--DYPQLQFEAAWALKNIVSGTSEDT   75 (447)
Q Consensus         2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~----~v~~L~~ll~~~--~~~~v~~~a~~~L~~l~~~~~~~~   75 (447)
                      +.++++++..++..|+++|+++.+....+.....++.|    +++.++++|.++  + ++++..|+|+|.+++. .++.+
T Consensus       336 ~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d-~~v~~~AveaLayLS~-~~~vk  413 (810)
T 3now_A          336 KRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKD-KDIRRWAADGLAYLTL-DAECK  413 (810)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCC-SSHHHHHHHHHHHHTT-SHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHHhC-CcHHH
Confidence            45677888999999999999998643222222233333    467788999888  6 7999999999999999 56666


Q ss_pred             HHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh-----------------------------hHH---HHHHh
Q 013228           76 KVVI-DHGAVPIFVKLLASPSDDIREQAVCALGNVAADSA-----------------------------RCR---DLVLS  122 (447)
Q Consensus        76 ~~~~-~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~-----------------------------~~~---~~~~~  122 (447)
                      ..++ +.|+++.|+.++.++++.++..++++|+||+.+.+                             ..+   +.+.+
T Consensus       414 ~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vve  493 (810)
T 3now_A          414 EKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLAN  493 (810)
T ss_dssp             HHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHH
Confidence            6666 57999999999999999999999999999997542                             122   56778


Q ss_pred             cCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHH
Q 013228          123 EEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQ  202 (447)
Q Consensus       123 ~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~  202 (447)
                      .|+++.++.++ .++++.+++.++|+|.|++.+.+........|++|.|+.+|+++++..+..|+|+|.+++...+....
T Consensus       494 aGaVp~LV~LL-~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~  572 (810)
T 3now_A          494 EGITTALCALA-KTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVS  572 (810)
T ss_dssp             TTHHHHHHHHH-TCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             CcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhh
Confidence            89999999999 67889999999999999997655444444589999999999999999999999999999865433211


Q ss_pred             H--HHHhCcHHHHHHhcCCCCc-hhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHh
Q 013228          203 A--VIEAGVCPRLVELLGHPSP-SVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNIT  279 (447)
Q Consensus       203 ~--~~~~~~~~~L~~lL~~~~~-~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~  279 (447)
                      .  ....++++.|+.+|.++.. ..+..|+++|.||+..++.....+++.|+++.|+.++.++ +..++..|+++++|++
T Consensus       573 ~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~-~~~Vq~~A~~~L~NLa  651 (810)
T 3now_A          573 FSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED-HLYLTRAAAQCLCNLV  651 (810)
T ss_dssp             TTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC-CTTHHHHHHHHHHHHT
T ss_pred             hcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHh
Confidence            0  0123689999999986534 4456899999999999888888899999999999999998 9999999999999998


Q ss_pred             cCCHHHHHHHHH-cCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHH-cCChHHHHhhccCCCHHHHHHHH
Q 013228          280 AGNSEHIQAVID-AGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVR-EGCIKPLCDLLLCADPEIVTVFL  357 (447)
Q Consensus       280 ~~~~~~~~~l~~-~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~-~~~l~~L~~ll~~~~~~~~~~a~  357 (447)
                      .+. +....+++ .|.++.|+.++.+++..++..|+|+|++++.. ++...+.+++ .|+++.|+.++.+++.+++..++
T Consensus       652 ~~~-~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~-s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~  729 (810)
T 3now_A          652 MSE-DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSV-SVKCCEKILAIASWLDILHTLIANPSPAVQHRGI  729 (810)
T ss_dssp             TSH-HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-CHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHH
T ss_pred             CCh-HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-CHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHH
Confidence            864 55666665 68999999999999999999999999999975 4677788888 89999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCC---CHHHHHHHHHHHHHhcC
Q 013228          358 KGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHD---NDEIHEKSVKILETYWC  420 (447)
Q Consensus       358 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~---~~~v~~~a~~~l~~~~~  420 (447)
                      +++.|+...+..             ....+.+.|+++.|.+++..+   ++++.+.|.++|+....
T Consensus       730 ~aL~NL~~~s~e-------------~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~  782 (810)
T 3now_A          730 VIILNMINAGEE-------------IAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER  782 (810)
T ss_dssp             HHHHHHHTTCHH-------------HHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHH-------------HHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence            999999974332             378888999999999997544   79999999999999765

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=1.4e-37  Score=303.07  Aligned_cols=394  Identities=16%  Similarity=0.163  Sum_probs=335.2

Q ss_pred             cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228            2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH   81 (447)
Q Consensus         2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (447)
                      ++.|+++++.++..|+++|.+++... ......+.+.|++|.|++++.+++ ++++..++.+|.+++.++++.+..+.+.
T Consensus       107 ~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~~~~~i~~~  184 (529)
T 1jdh_A          107 VKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLIILAS  184 (529)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHHHHHHHHHC
Confidence            56788999999999999999999874 455777778999999999999988 8999999999999999889999999999


Q ss_pred             CChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCC
Q 013228           82 GAVPIFVKLLASP-SDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPI  160 (447)
Q Consensus        82 ~~i~~L~~ll~~~-~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~  160 (447)
                      |+++.|+.++++. +...+..++.+|.+++..+ ..+..+.+.|+++.++.++ .+.+..+++.++|++.+++...+.. 
T Consensus       185 ~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~-  261 (529)
T 1jdh_A          185 GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAATKQ-  261 (529)
T ss_dssp             THHHHHHHHHHHCCCHHHHHHHHHHHHHHTTST-THHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHTTCTTC-
T ss_pred             CCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCc-ccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHHHHHHHhcCChhh-
Confidence            9999999999875 4567778899999999754 4678888899999999999 5668899999999999999876332 


Q ss_pred             hhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC--CCchhHhHHHHHHHHhhcC
Q 013228          161 FDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH--PSPSVLTRALQTVVNIAAG  238 (447)
Q Consensus       161 ~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~--~~~~v~~~a~~~l~~l~~~  238 (447)
                       ....+++|.+++++.++++.++..++++|++++..++.....+.+.|+++.|+.++.+  .++.++..++++|++++..
T Consensus       262 -~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~  340 (529)
T 1jdh_A          262 -EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR  340 (529)
T ss_dssp             -SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred             -HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcC
Confidence             2346899999999999999999999999999998877777889999999999999965  3479999999999999986


Q ss_pred             Chh---hHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHH
Q 013228          239 DDF---QTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAAR  315 (447)
Q Consensus       239 ~~~---~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~  315 (447)
                      ++.   .+..+.+.|+++.|++++.++.+..++..++|+++|++.+.. ....+.+.|++|.|+.++.++++++|..|+|
T Consensus       341 ~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~  419 (529)
T 1jdh_A          341 HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQDTQRRTSM  419 (529)
T ss_dssp             STTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHHHHHHHHC-----
T ss_pred             CchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh-hhHHHHHcCCHHHHHHHHHHHhHHHHHHHhc
Confidence            543   356788899999999999988346999999999999988644 4578889999999999999888888887776


Q ss_pred             HHHH----------------------hcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhh
Q 013228          316 AISN----------------------ATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNM  373 (447)
Q Consensus       316 aL~~----------------------l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~  373 (447)
                      ++.|                      ++.  .++.+..+.+.|+++.|+.++.+++++++..+.++|.++....      
T Consensus       420 ~l~n~~~~~~~~~~~i~~~~~~al~~L~~--~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~------  491 (529)
T 1jdh_A          420 GGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK------  491 (529)
T ss_dssp             ------CBTTBCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSH------
T ss_pred             ccCchhhhccccHHHHHHHHHHHHHHHhc--CchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCH------
Confidence            6665                      444  3556677889999999999999999999999999999987431      


Q ss_pred             hhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013228          374 DIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETY  418 (447)
Q Consensus       374 ~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~  418 (447)
                              .++..+.+.|+++.|..++++++++|+.+|.++|.++
T Consensus       492 --------~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l  528 (529)
T 1jdh_A          492 --------EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             --------HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             --------HHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence                    1478889999999999999999999999999999875

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.4e-36  Score=300.00  Aligned_cols=392  Identities=17%  Similarity=0.177  Sum_probs=335.0

Q ss_pred             CcccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228            1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID   80 (447)
Q Consensus         1 lv~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (447)
                      |+++|+++++.++..|+++|.+++... ......+.+.|+++.|+++|++++ ++++..++.+|.+++..+++.+..+.+
T Consensus       103 Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~~~~i~~  180 (644)
T 2z6h_A          103 LVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLIILA  180 (644)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            356788999999999999999999875 556677888999999999999998 899999999999999878999999999


Q ss_pred             CCChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCC
Q 013228           81 HGAVPIFVKLLASP-SDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKP  159 (447)
Q Consensus        81 ~~~i~~L~~ll~~~-~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~  159 (447)
                      .|+++.|+.++++. ...++..++.+|.+++... ..+..+.+.|+++.++.++ .+.+..+++.++|+|.+++...+..
T Consensus       181 ~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~-~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~~~~~~~  258 (644)
T 2z6h_A          181 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAATKQ  258 (644)
T ss_dssp             TTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCT-THHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHHHGGGCTTC
T ss_pred             cCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCc-ccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhhcchhh
Confidence            99999999999875 4678899999999999754 4788888999999999999 5668899999999999999876332


Q ss_pred             ChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC--CchhHhHHHHHHHHhhc
Q 013228          160 IFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHP--SPSVLTRALQTVVNIAA  237 (447)
Q Consensus       160 ~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~--~~~v~~~a~~~l~~l~~  237 (447)
                        ....+++|.|+.++++.++.++..++++|++++..+......+.+.|+++.|+.++.+.  .+.++..|+++|++++.
T Consensus       259 --~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~  336 (644)
T 2z6h_A          259 --EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS  336 (644)
T ss_dssp             --CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred             --hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhc
Confidence              33468999999999999999999999999999988777778889999999999999763  37999999999999997


Q ss_pred             CCh---hhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCc--------
Q 013228          238 GDD---FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAE--------  306 (447)
Q Consensus       238 ~~~---~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~--------  306 (447)
                      ..+   .....+.+.++++.|+++|.++.+..+++.++|+|+|++.+.. ..+.+.+.|+++.|+.++.+++        
T Consensus       337 ~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~-~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~  415 (644)
T 2z6h_A          337 RHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQDTQRRTS  415 (644)
T ss_dssp             SSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHHHHHHHHTTC--
T ss_pred             CCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHH-HHHHHHHcCCHHHHHHHHhccchhhhhHhh
Confidence            544   2334577889999999999987447999999999999988654 4478889999999999998744        


Q ss_pred             --------------hhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhh
Q 013228          307 --------------FDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKN  372 (447)
Q Consensus       307 --------------~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~  372 (447)
                                    .+++..++.+|.+++.  ++.....+.+.|+++.|+.++.+.+++++..++++|.++....+    
T Consensus       416 ~al~n~~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~----  489 (644)
T 2z6h_A          416 MGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE----  489 (644)
T ss_dssp             --------CCSSCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHH----
T ss_pred             hccccchhcccccHHHHHHHHHHHHHHHhc--CHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHH----
Confidence                          3456667777777776  44666788899999999999999999999999999999875311    


Q ss_pred             hhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHH
Q 013228          373 MDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKIL  415 (447)
Q Consensus       373 ~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l  415 (447)
                                ++..+.+.|+++.|..++.+++++++..|.++|
T Consensus       490 ----------~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL  522 (644)
T 2z6h_A          490 ----------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVL  522 (644)
T ss_dssp             ----------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             ----------HHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHH
Confidence                      478899999999999999999999966544433

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=8.6e-37  Score=290.26  Aligned_cols=386  Identities=17%  Similarity=0.213  Sum_probs=313.2

Q ss_pred             hhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC-
Q 013228           34 EVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAAD-  112 (447)
Q Consensus        34 ~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~-  112 (447)
                      .-.+.+.++.|+++|.+++ ++++..|+++|.+++..+++.+..+++.|+|+.|+.+|.++++.+++.|+|+|.||+.. 
T Consensus        43 ~~~~~~~i~~LV~~L~s~~-~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~  121 (584)
T 3l6x_A           43 PNWRQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGR  121 (584)
T ss_dssp             CCCCCCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSS
T ss_pred             CCcccccHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccC
Confidence            3456789999999999998 99999999999999988999999999999999999999999999999999999999985 


Q ss_pred             ChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhc----------------
Q 013228          113 SARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVH----------------  176 (447)
Q Consensus       113 ~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~----------------  176 (447)
                      ++..+..+.+.|++++|+.+|....+.++++.++++|++|+... ........+++|.|++++.                
T Consensus       122 ~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~-~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~  200 (584)
T 3l6x_A          122 DQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD-SIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKP  200 (584)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG-GGHHHHHHHTHHHHHHHTHHHHHCCC---------
T ss_pred             CHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhhHHHHhccHHHHHHHHhcccccccccccccccc
Confidence            57789999999999999999965567889999999999999865 3444445778999999762                


Q ss_pred             --cCChhHHHHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHhcCC------CCchhHhHHHHHHHHhhcCChh------
Q 013228          177 --SNDKEVMTDACRALFYLSEGTNDEIQAVIEA-GVCPRLVELLGH------PSPSVLTRALQTVVNIAAGDDF------  241 (447)
Q Consensus       177 --~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~-~~~~~L~~lL~~------~~~~v~~~a~~~l~~l~~~~~~------  241 (447)
                        ..++.++..+.++|.|++..+++..+.+.+. |+++.|+.++.+      .+...++.|+++|.||+.....      
T Consensus       201 ~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~  280 (584)
T 3l6x_A          201 RHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAE  280 (584)
T ss_dssp             -CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCC
T ss_pred             cccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchh
Confidence              2367999999999999998877656677775 667799999853      5677899999999999865211      


Q ss_pred             -------------------hHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCH---HHHHHH-HHcCChHHH
Q 013228          242 -------------------QTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNS---EHIQAV-IDAGLIGPL  298 (447)
Q Consensus       242 -------------------~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~---~~~~~l-~~~~~~~~L  298 (447)
                                         ....+.+.++++.++.+|.+..+..+++.|+|+|.|++.+..   ...+.. .+.+++|.|
T Consensus       281 ~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~L  360 (584)
T 3l6x_A          281 RYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAI  360 (584)
T ss_dssp             C--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHH
T ss_pred             hhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHH
Confidence                               111222334567788899754489999999999999998642   223333 356889999


Q ss_pred             HHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCC--------CHHHHHHHHHHHHHHHHhhhhh
Q 013228          299 VNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCA--------DPEIVTVFLKGLEKILKVGEAE  370 (447)
Q Consensus       299 ~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~--------~~~~~~~a~~~l~~l~~~~~~~  370 (447)
                      +++|.+++..++..|+++|.||+....  ... .+..|+++.|+++|.+.        ..+++..++++|.|++..+.. 
T Consensus       361 v~LL~s~~~~v~~~A~~aL~nLs~~~~--~~~-~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~-  436 (584)
T 3l6x_A          361 ADLLTNEHERVVKAASGALRNLAVDAR--NKE-LIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLE-  436 (584)
T ss_dssp             HHGGGCSCHHHHHHHHHHHHHHHTTCS--CHH-HHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHH-
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHhCChh--HHH-HHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHH-
Confidence            999999999999999999999998643  233 34778999999999876        357888999999999865443 


Q ss_pred             hhhhhhcccccHHHHHHHHhchHHHHHHHhcCC--CHHHHHHHHHHHHHhcCCCCC-CC--CCCCC-CCcccC
Q 013228          371 KNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHD--NDEIHEKSVKILETYWCGRVA-GP--QPGNE-GEDALG  437 (447)
Q Consensus       371 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~--~~~v~~~a~~~l~~~~~~~~~-~~--~~~~~-~~~~~~  437 (447)
                                  ....+.+.|+++.|.+++.++  ++.+++.|.++|.++|...+- ..  +.|-+ .+|..+
T Consensus       437 ------------~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr~~~kk~G~~~~~f~~~  497 (584)
T 3l6x_A          437 ------------AAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEGWKKSDFQVN  497 (584)
T ss_dssp             ------------HHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHHHHHHTTTCCGGGGCCC
T ss_pred             ------------HHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHHHHHHHcCCCHHHhccc
Confidence                        267788899999999998875  899999999999999976551 11  34444 556544

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=2.4e-38  Score=300.12  Aligned_cols=358  Identities=16%  Similarity=0.170  Sum_probs=297.3

Q ss_pred             CcccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228            1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID   80 (447)
Q Consensus         1 lv~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (447)
                      +|.+|.+++++++..|+++|.+++.++ +.....+.+.|++|.|+++|++++ ++++..|+++|.+++.++++++..+++
T Consensus         7 lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~~i~~   84 (457)
T 1xm9_A            7 AVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKLETRR   84 (457)
T ss_dssp             HHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            367889999999999999999998653 444558899999999999999988 999999999999999977999999999


Q ss_pred             CCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcc--------c-------cchhHHHH
Q 013228           81 HGAVPIFVKLLA-SPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNK--------H-------AKLSMLRI  144 (447)
Q Consensus        81 ~~~i~~L~~ll~-~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~--------~-------~~~~~~~~  144 (447)
                      .|+++.|+++|. ++++++++.++|+|+||+.+ +..+..+.+ |++++|+.++..        .       .+.++++.
T Consensus        85 ~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~  162 (457)
T 1xm9_A           85 QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN  162 (457)
T ss_dssp             TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred             cCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHH
Confidence            999999999999 78999999999999999988 557888888 999999999931        1       35678889


Q ss_pred             HHHHHHHhcCCCCCCChhhH-h-hhHHHHHHhhcc------CChhHHHHHHHHHHHhccCC-------------------
Q 013228          145 ATWTLSNFCAGKPKPIFDQV-R-PALPALAQLVHS------NDKEVMTDACRALFYLSEGT-------------------  197 (447)
Q Consensus       145 a~~~L~~l~~~~~~~~~~~~-~-~~l~~l~~ll~~------~~~~v~~~al~~l~~l~~~~-------------------  197 (447)
                      ++|+|+|++.. +....... . |++|.|+.++++      .+..++..++.++.+++...                   
T Consensus       163 a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~  241 (457)
T 1xm9_A          163 ATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY  241 (457)
T ss_dssp             HHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred             HHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccc
Confidence            99999999987 33333333 3 899999999985      46778889999999987321                   


Q ss_pred             -------------------------------cHHHHHHHHhCcHHHHHHhcCC-CCchhHhHHHHHHHHhhcCChhhH--
Q 013228          198 -------------------------------NDEIQAVIEAGVCPRLVELLGH-PSPSVLTRALQTVVNIAAGDDFQT--  243 (447)
Q Consensus       198 -------------------------------~~~~~~~~~~~~~~~L~~lL~~-~~~~v~~~a~~~l~~l~~~~~~~~--  243 (447)
                                                     +...+.+.+.|+++.++.+|.+ .++.++..|+++|+|++.++....  
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~  321 (457)
T 1xm9_A          242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG  321 (457)
T ss_dssp             ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred             ccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHH
Confidence                                           0011223445678888899865 568899999999999998764321  


Q ss_pred             --H-HHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCch------hHHHHHH
Q 013228          244 --Q-CIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEF------DIKNWAA  314 (447)
Q Consensus       244 --~-~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~------~v~~~a~  314 (447)
                        + .+.+.|+++.|+++|.++ +.+++++|+|+|+|++.+. + .+.++..|+++.|+++|..+++      ++...++
T Consensus       322 ~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~~-~-~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l  398 (457)
T 1xm9_A          322 MSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRHP-L-LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSAC  398 (457)
T ss_dssp             HHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSG-G-GHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHH
T ss_pred             HHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcCH-H-HHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHH
Confidence              2 334689999999999999 9999999999999998753 3 4556667899999999997643      6888999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCC-CHHHHHHHHHHHHHHHHhh
Q 013228          315 RAISNATFGGTHEQIKYLVREGCIKPLCDLLLCA-DPEIVTVFLKGLEKILKVG  367 (447)
Q Consensus       315 ~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~~~~~a~~~l~~l~~~~  367 (447)
                      ++|.++... +++....+.+.|+++.|++++.++ +++++..|.++|.+++...
T Consensus       399 ~~l~ni~~~-~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~  451 (457)
T 1xm9_A          399 YTVRNLMAS-QPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK  451 (457)
T ss_dssp             HHHHHHHTT-CTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred             HHHHHHHhc-CHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcch
Confidence            999999876 457788888999999999999999 9999999999999988643

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=2.3e-37  Score=294.15  Aligned_cols=360  Identities=19%  Similarity=0.188  Sum_probs=297.5

Q ss_pred             CcccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-ChhhHHHHH
Q 013228            1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSG-TSEDTKVVI   79 (447)
Q Consensus         1 lv~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~   79 (447)
                      +|++|.++++.+|..|+++|.+++.+. .+.+..+++.|++|.|+++|++++ +++++.|+++|.+++.+ +++++..++
T Consensus        53 LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~nk~~I~  130 (584)
T 3l6x_A           53 VIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDNKIAIK  130 (584)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHHHHHHHH
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence            467899999999999999999999764 677888999999999999999999 99999999999999985 689999999


Q ss_pred             hCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhc-----------------cccchhH
Q 013228           80 DHGAVPIFVKLLAS-PSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLN-----------------KHAKLSM  141 (447)
Q Consensus        80 ~~~~i~~L~~ll~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~-----------------~~~~~~~  141 (447)
                      +.|+|+.|+.+|.+ .+.++++.++++|++|+..+ ..+..+.+ +++++|++++.                 ...+..+
T Consensus       131 ~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~-~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V  208 (584)
T 3l6x_A          131 NCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD-SIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESV  208 (584)
T ss_dssp             HTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG-GGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHH
T ss_pred             HcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHH
Confidence            99999999999997 68899999999999999854 46777765 57999999872                 1235789


Q ss_pred             HHHHHHHHHHhcCCCCCCChhhH--hhhHHHHHHhhcc------CChhHHHHHHHHHHHhccCCcHH-------------
Q 013228          142 LRIATWTLSNFCAGKPKPIFDQV--RPALPALAQLVHS------NDKEVMTDACRALFYLSEGTNDE-------------  200 (447)
Q Consensus       142 ~~~a~~~L~~l~~~~~~~~~~~~--~~~l~~l~~ll~~------~~~~v~~~al~~l~~l~~~~~~~-------------  200 (447)
                      +++++++|.||+...+.....+.  .++++.|+.++++      .+...++.|+++|+|++......             
T Consensus       209 ~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~  288 (584)
T 3l6x_A          209 LTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPN  288 (584)
T ss_dssp             HHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-------
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhccc
Confidence            99999999999987643233222  5778899999874      46789999999999999652110             


Q ss_pred             ------------HHHHHHhCcHHHHHHhcC-CCCchhHhHHHHHHHHhhcCChh----hHHHHHhcCChHHHHHhhccCC
Q 013228          201 ------------IQAVIEAGVCPRLVELLG-HPSPSVLTRALQTVVNIAAGDDF----QTQCIINCGALPYLLGLLIHNH  263 (447)
Q Consensus       201 ------------~~~~~~~~~~~~L~~lL~-~~~~~v~~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~l~~~l~~~~  263 (447)
                                  ...+.+.++++.++.+|. +.++.+++.|+++|+||+.+...    ....+.+.++++.|+++|.++ 
T Consensus       289 ~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~-  367 (584)
T 3l6x_A          289 VANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNE-  367 (584)
T ss_dssp             -------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCS-
T ss_pred             ccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCC-
Confidence                        011223345678888985 56799999999999999987532    223445578899999999999 


Q ss_pred             chhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--------chhHHHHHHHHHHHhcCCCCHHHHHHHHHc
Q 013228          264 KKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNA--------EFDIKNWAARAISNATFGGTHEQIKYLVRE  335 (447)
Q Consensus       264 ~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~--------~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~  335 (447)
                      +..++..|+|+|+||+.+.. . +..+..|++|.|+.+|.++        +.+++..|+++|.|++.. ++++.+.+.+.
T Consensus       368 ~~~v~~~A~~aL~nLs~~~~-~-~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~-~~~~~~~I~~~  444 (584)
T 3l6x_A          368 HERVVKAASGALRNLAVDAR-N-KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE-NLEAAKKLRET  444 (584)
T ss_dssp             CHHHHHHHHHHHHHHHTTCS-C-HHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHhCChh-H-HHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC-CHHHHHHHHHC
Confidence            99999999999999998643 2 3455788999999999975        357889999999999876 78899999999


Q ss_pred             CChHHHHhhccCC--CHHHHHHHHHHHHHHHHhhh
Q 013228          336 GCIKPLCDLLLCA--DPEIVTVFLKGLEKILKVGE  368 (447)
Q Consensus       336 ~~l~~L~~ll~~~--~~~~~~~a~~~l~~l~~~~~  368 (447)
                      |+++.|+.++.+.  .+.+++.|.++|.++..+.+
T Consensus       445 g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e  479 (584)
T 3l6x_A          445 QGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE  479 (584)
T ss_dssp             THHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred             CChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence            9999999999986  78999999999999987544

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=8.9e-36  Score=289.79  Aligned_cols=365  Identities=24%  Similarity=0.309  Sum_probs=323.3

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh-hhHHHHHhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhcCChhH
Q 013228           39 GVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTS-EDTKVVIDHGAVPIFVKLLASPS-DDIREQAVCALGNVAADSARC  116 (447)
Q Consensus        39 ~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~ll~~~~-~~i~~~a~~~L~~l~~~~~~~  116 (447)
                      ..++.|++.|.+++ ++++..|+++|.+++.... .....++..|+++.|+.+|.+++ +.++..|+|+|++++.+.+..
T Consensus        74 ~~l~~lv~~L~s~~-~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~  152 (528)
T 4b8j_A           74 ESLPAMIGGVYSDD-NNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSEN  152 (528)
T ss_dssp             -CHHHHHHHHTSSC-HHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred             HHHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence            35899999999998 9999999999999976554 66788899999999999999876 999999999999999988888


Q ss_pred             HHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCC-ChhhHhhhHHHHHHhh-ccCChhHHHHHHHHHHHhc
Q 013228          117 RDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKP-IFDQVRPALPALAQLV-HSNDKEVMTDACRALFYLS  194 (447)
Q Consensus       117 ~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~l~~l~~ll-~~~~~~v~~~al~~l~~l~  194 (447)
                      +..+.+.|+++.++.+| .+++..++..++|+|.+++...+.. ......++++.|+.++ .+.++.++..++++|++++
T Consensus       153 ~~~~~~~g~i~~L~~lL-~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~  231 (528)
T 4b8j_A          153 TKVVIDHGAVPIFVKLL-GSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC  231 (528)
T ss_dssp             HHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCcHHHHHHHh-cCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999 6678899999999999999775332 2233468999999999 6778999999999999999


Q ss_pred             cCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHH
Q 013228          195 EGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWT  274 (447)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~  274 (447)
                      ...+.. ......++++.|+.++.++++.++..++++|++++.+.+.....+++.|+++.|+.+|.++ +..++..|+++
T Consensus       232 ~~~~~~-~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~-~~~v~~~a~~~  309 (528)
T 4b8j_A          232 RGKPQP-SFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHP-SPSVLIPALRT  309 (528)
T ss_dssp             CSSSCC-CHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHH
T ss_pred             cCCCCC-cHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCC-ChhHHHHHHHH
Confidence            764322 2344579999999999999999999999999999998888878889999999999999999 89999999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-chhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHH
Q 013228          275 ISNITAGNSEHIQAVIDAGLIGPLVNLLQNA-EFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIV  353 (447)
Q Consensus       275 l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~  353 (447)
                      |+|++.+++...+.+++.|+++.|+.++.++ ++.++..|+|+|+|++.. +++....+.+.|+++.|+.++.+.+++++
T Consensus       310 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~v~  388 (528)
T 4b8j_A          310 VGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG-NKDQIQAVINAGIIGPLVNLLQTAEFDIK  388 (528)
T ss_dssp             HHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHH
Confidence            9999998888888999999999999999988 999999999999999985 67788888999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 013228          354 TVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWC  420 (447)
Q Consensus       354 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  420 (447)
                      ..++++|.++...+...            ....+.+.|+++.|..++.+++++++..|.++|.+++.
T Consensus       389 ~~a~~aL~nl~~~~~~~------------~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~  443 (528)
T 4b8j_A          389 KEAAWAISNATSGGSHD------------QIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILK  443 (528)
T ss_dssp             HHHHHHHHHHHHHSCHH------------HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHH------------HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            99999999999864322            35667789999999999999999999999998888764

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=4.2e-37  Score=293.60  Aligned_cols=362  Identities=25%  Similarity=0.306  Sum_probs=315.9

Q ss_pred             cccccCC-CHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228            2 VAGVWSD-DNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID   80 (447)
Q Consensus         2 v~~l~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (447)
                      ++.|+++ ++.++..|+++|.+++.+. .+....+++.|+++.|+++|++++ ++++..|+++|++++..+++.+..+.+
T Consensus        70 ~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~~~~~~~  147 (450)
T 2jdq_A           70 VEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMCRDYVLD  147 (450)
T ss_dssp             HHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence            4567777 8999999999999999864 455667788999999999999998 999999999999999988889999999


Q ss_pred             CCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCC-hhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCC
Q 013228           81 HGAVPIFVKLLAS-PSDDIREQAVCALGNVAADS-ARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPK  158 (447)
Q Consensus        81 ~~~i~~L~~ll~~-~~~~i~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~  158 (447)
                      .|+++.|+.++.+ +++.++..++++|++++... +..+..+ ..++++.++.++ .+.+..++..++|+|.+++...+.
T Consensus       148 ~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l~~~~~~  225 (450)
T 2jdq_A          148 CNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLL-FVSDTDVLADACWALSYLSDGPND  225 (450)
T ss_dssp             TTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHTSSSHH
T ss_pred             CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHH-ccCCHHHHHHHHHHHHHHHCCCcH
Confidence            9999999999996 78999999999999999764 3222222 367899999999 677889999999999999986522


Q ss_pred             -CChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhc
Q 013228          159 -PIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAA  237 (447)
Q Consensus       159 -~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~  237 (447)
                       .......+++|.++.++.++++.++..++++|++++...+...+.+.+.|+++.|+.++.++++.++..|+++|++++.
T Consensus       226 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~  305 (450)
T 2jdq_A          226 KIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITA  305 (450)
T ss_dssp             HHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence             2222336899999999999999999999999999998887777778888999999999999999999999999999999


Q ss_pred             CChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHH
Q 013228          238 GDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAG-NSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARA  316 (447)
Q Consensus       238 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~a  316 (447)
                      +++.....+++.++++.++.++.++ ++.+|..|+|+|+|++.+ +++..+.+++.|+++.|+.++.+++++++..|+++
T Consensus       306 ~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a  384 (450)
T 2jdq_A          306 GNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNG  384 (450)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHH
Confidence            8888888888899999999999998 999999999999999975 67888888999999999999999999999999999


Q ss_pred             HHHhcCCCCH----------HHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhh
Q 013228          317 ISNATFGGTH----------EQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGE  368 (447)
Q Consensus       317 L~~l~~~~~~----------~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~  368 (447)
                      |.+++..+..          .....+.+.|+++.|..++.+++++++..++.+|.+++...+
T Consensus       385 L~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~  446 (450)
T 2jdq_A          385 LENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTED  446 (450)
T ss_dssp             HHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC-
T ss_pred             HHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence            9999874322          234677788999999999999999999999999999996443

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=2.5e-35  Score=286.53  Aligned_cols=371  Identities=23%  Similarity=0.282  Sum_probs=324.3

Q ss_pred             ccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC-hhhHHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCCh
Q 013228           37 PFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGT-SEDTKVVIDHGAVPIFVKLLASP-SDDIREQAVCALGNVAADSA  114 (447)
Q Consensus        37 ~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll~~~-~~~i~~~a~~~L~~l~~~~~  114 (447)
                      ..+.++.|++.|++++ ++++..|+++|.++.... ......+++.|+++.|+.+|.++ ++.++..|+|+|++++...+
T Consensus        85 ~~~~i~~lv~~L~s~~-~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~  163 (530)
T 1wa5_B           85 LQQELPQMTQQLNSDD-MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS  163 (530)
T ss_dssp             --CCHHHHHHHHSCSS-HHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH
T ss_pred             hHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH
Confidence            3467999999999998 899999999999997632 34556788899999999999987 89999999999999999888


Q ss_pred             hHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCC-CChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHh
Q 013228          115 RCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPK-PIFDQVRPALPALAQLVHSNDKEVMTDACRALFYL  193 (447)
Q Consensus       115 ~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l  193 (447)
                      ..+..+...|+++.++.+| .+.+..++..++|+|.+++...+. .......++++.|+.++.+.++.++..++++|+++
T Consensus       164 ~~~~~~~~~g~i~~Lv~lL-~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L  242 (530)
T 1wa5_B          164 AQTKVVVDADAVPLFIQLL-YTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNL  242 (530)
T ss_dssp             HHHHHHHHTTCHHHHHHHH-HHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence            8888888999999999999 577899999999999999987522 22233478999999999999999999999999999


Q ss_pred             ccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHH
Q 013228          194 SEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACW  273 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~  273 (447)
                      +.............++++.|+.++.++++.++..++++|++++...+.....+++.|+++.|+.++.++ +..++..|++
T Consensus       243 ~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~-~~~v~~~a~~  321 (530)
T 1wa5_B          243 CRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE-STLVQTPALR  321 (530)
T ss_dssp             HCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHH
T ss_pred             hCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCC-ChhhHHHHHH
Confidence            976522223455679999999999999999999999999999998887778888999999999999988 9999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHH
Q 013228          274 TISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIV  353 (447)
Q Consensus       274 ~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~  353 (447)
                      +|++++.+++...+.+++.|+++.|+.++.++++.++..|+++|++++.. +++....+.+.|+++.|+.++.+++++++
T Consensus       322 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~v~  400 (530)
T 1wa5_B          322 AVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG-NTEQIQAVIDANLIPPLVKLLEVAEYKTK  400 (530)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHH
Confidence            99999998888888899999999999999999999999999999999985 56777888899999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 013228          354 TVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWCG  421 (447)
Q Consensus       354 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  421 (447)
                      ..++++|.+++..+...          ......+.+.|+++.|..++.+++++++..|.++|.+++..
T Consensus       401 ~~a~~aL~~l~~~~~~~----------~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~  458 (530)
T 1wa5_B          401 KEACWAISNASSGGLQR----------PDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKM  458 (530)
T ss_dssp             HHHHHHHHHHHHHTTTC----------THHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCc----------HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence            99999999999864320          01355666799999999999999999999999999988753

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=2.9e-35  Score=296.39  Aligned_cols=399  Identities=17%  Similarity=0.164  Sum_probs=340.2

Q ss_pred             CcccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228            1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID   80 (447)
Q Consensus         1 lv~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (447)
                      |+++|+++++.++..|+++|.+++... ......+.+.|+++.|+++|++++ ..++..++.+|.+++..+++.+..+.+
T Consensus       239 Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e~~~~i~~  316 (780)
T 2z6g_A          239 LVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLIILA  316 (780)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence            356788999999999999999999874 555667778999999999999988 899999999999999888999999999


Q ss_pred             CCChHHHHHhhCCCC-HHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCC
Q 013228           81 HGAVPIFVKLLASPS-DDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKP  159 (447)
Q Consensus        81 ~~~i~~L~~ll~~~~-~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~  159 (447)
                      .|+++.|+.++++.+ ...+..++.+|.+|+... ..+..+.+.|+++.|+.++ .+.+..+++.++|+|.+++...+. 
T Consensus       317 ~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~~~~~~-  393 (780)
T 2z6g_A          317 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAATK-  393 (780)
T ss_dssp             TTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTST-THHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHHHHTTCTT-
T ss_pred             cCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh-HHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHHHHhccchh-
Confidence            999999999998754 556778899999999754 4677888899999999999 566788999999999999987633 


Q ss_pred             ChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-CC-chhHhHHHHHHHHhhc
Q 013228          160 IFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH-PS-PSVLTRALQTVVNIAA  237 (447)
Q Consensus       160 ~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~-~~v~~~a~~~l~~l~~  237 (447)
                       .....++++.|+.++++.++.++..++++|++++..++.....+.+.|+++.|+.+|.+ .+ +.++..|+++|++++.
T Consensus       394 -~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~  472 (780)
T 2z6g_A          394 -QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS  472 (780)
T ss_dssp             -CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred             -hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence             22347899999999999999999999999999998887777888889999999999976 33 4899999999999987


Q ss_pred             CChh---hHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCc--------
Q 013228          238 GDDF---QTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAE--------  306 (447)
Q Consensus       238 ~~~~---~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~--------  306 (447)
                      .++.   ....+.+.++++.|+.+|.++....++..++|+|+|++.+. .....+.+.|+++.|+.++.+++        
T Consensus       473 ~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa  551 (780)
T 2z6g_A          473 RHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQDTQRRTS  551 (780)
T ss_dssp             SSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSH-HHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCH-HHHHHHHHCCCHHHHHHHHHhcchhHHHHHh
Confidence            6543   24567888999999999998834599999999999998754 55578889999999999998644        


Q ss_pred             --------------hhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhh
Q 013228          307 --------------FDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKN  372 (447)
Q Consensus       307 --------------~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~  372 (447)
                                    .+++..++.+|.+++.  ++.....+.+.|+++.|+.++.+.++.++..++.+|.++....+    
T Consensus       552 ~al~nq~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~----  625 (780)
T 2z6g_A          552 MGGTQQQFVEGVRMEEIVEACTGALHILAR--DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE----  625 (780)
T ss_dssp             ------CCSTTCCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHH----
T ss_pred             hccccchhhcccChHHHHHHHHHHHHHHhc--ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHH----
Confidence                          3456678888888876  56777778899999999999999999999999999999974311    


Q ss_pred             hhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 013228          373 MDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWCGR  422 (447)
Q Consensus       373 ~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~  422 (447)
                                ++..|.+.|+++.|..++++++++|+..|.++|.++....
T Consensus       626 ----------~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~  665 (780)
T 2z6g_A          626 ----------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK  665 (780)
T ss_dssp             ----------HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTS
T ss_pred             ----------HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence                      4788999999999999999999999888777777665533

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=2.6e-35  Score=287.03  Aligned_cols=397  Identities=15%  Similarity=0.141  Sum_probs=331.5

Q ss_pred             cccccC-CCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228            2 VAGVWS-DDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID   80 (447)
Q Consensus         2 v~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (447)
                      ++.|.+ ++++++..|+.+|.+++..  ++....+.+.|+++.|+++|++++ ++++..|+++|.+++..++..+..+.+
T Consensus        65 v~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~  141 (529)
T 1jdh_A           65 VRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGAKMAVRL  141 (529)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHcC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence            344544 4899999999999998765  457788889999999999999999 999999999999999977788888989


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCC
Q 013228           81 HGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPI  160 (447)
Q Consensus        81 ~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~  160 (447)
                      .|+++.|+.++.++++.++..++.+|.+++..++..+..+.+.|+++.++.++....+...+..++.+|.+++.......
T Consensus       142 ~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~  221 (529)
T 1jdh_A          142 AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP  221 (529)
T ss_dssp             HTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHH
T ss_pred             cCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHH
Confidence            99999999999999999999999999999998888889999999999999999766667788889999999997654333


Q ss_pred             hhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCCh
Q 013228          161 FDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD  240 (447)
Q Consensus       161 ~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~  240 (447)
                      .....++++.++.++.++++.++..+++++.+++.......   ...++++.|+.++.++++.++..++++|++++..++
T Consensus       222 ~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~  298 (529)
T 1jdh_A          222 AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY  298 (529)
T ss_dssp             HHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCH
T ss_pred             HHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH
Confidence            33447899999999999999999999999999997654321   123689999999999999999999999999999888


Q ss_pred             hhHHHHHhcCChHHHHHhhccC-CchhHHHHHHHHHHHHhcCCHH---HHHHHHHcCChHHHHHHHhcCc-hhHHHHHHH
Q 013228          241 FQTQCIINCGALPYLLGLLIHN-HKKSIKTDACWTISNITAGNSE---HIQAVIDAGLIGPLVNLLQNAE-FDIKNWAAR  315 (447)
Q Consensus       241 ~~~~~~~~~~~l~~l~~~l~~~-~~~~v~~~a~~~l~nl~~~~~~---~~~~l~~~~~~~~L~~~l~~~~-~~v~~~a~~  315 (447)
                      .....+.+.|+++.+++++.+. .++.++..++++|+|++..+++   ....+.+.|+++.|+.++.+++ +.++..+++
T Consensus       299 ~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~  378 (529)
T 1jdh_A          299 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG  378 (529)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHH
T ss_pred             HHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHH
Confidence            7888899999999999999863 1479999999999999875433   4567889999999999999876 599999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHH----------------------HHHhhhhhhhh
Q 013228          316 AISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEK----------------------ILKVGEAEKNM  373 (447)
Q Consensus       316 aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~----------------------l~~~~~~~~~~  373 (447)
                      +|+|++..  ++....+.+.|+++.|+.++.+.+++++..+.|++.+                      +....      
T Consensus       379 ~l~nl~~~--~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~------  450 (529)
T 1jdh_A          379 LIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV------  450 (529)
T ss_dssp             HHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSH------
T ss_pred             HHHHHhcC--hhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCc------
Confidence            99999984  3445778899999999999988777777766665554                      33211      


Q ss_pred             hhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 013228          374 DIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWC  420 (447)
Q Consensus       374 ~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  420 (447)
                              ..+..+.+.|+++.|..++.+++++++..|.+.+.++..
T Consensus       451 --------~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~  489 (529)
T 1jdh_A          451 --------HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ  489 (529)
T ss_dssp             --------HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred             --------hHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhc
Confidence                    125668889999999999999999999999999998764

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=7.3e-36  Score=278.07  Aligned_cols=313  Identities=18%  Similarity=0.187  Sum_probs=264.5

Q ss_pred             CCHHHHHHHHHHHHHHHccCCCCchhhhhccCCH----------HHHHHhhcCCC-CHH-----HHH-------HHHHHH
Q 013228            8 DDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVV----------PRFVEFLMRED-YPQ-----LQF-------EAAWAL   64 (447)
Q Consensus         8 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v----------~~L~~ll~~~~-~~~-----v~~-------~a~~~L   64 (447)
                      ++++++++|+|+|.+++++. ++..+...+.|++          +.+++++.+.. +.+     +++       +|+|+|
T Consensus        94 ~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL  172 (458)
T 3nmz_A           94 GSKEARARASAALHNIIHSQ-PDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVL  172 (458)
T ss_dssp             CCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHH
Confidence            44799999999999999987 6677777777777          67777777652 122     544       999999


Q ss_pred             HHHcCCChhhHHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhhcCChhHHHHHHh-cCCHHHHHHH
Q 013228           65 KNIVSGTSEDTKVVIDHGAVPIFVKLLAS-----------PSDDIREQAVCALGNVAADSARCRDLVLS-EEALIPLLTQ  132 (447)
Q Consensus        65 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-----------~~~~i~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~l~~~  132 (447)
                      .|++. ++++|+.+.+.|++++|+.++..           .++.+++.|+|+|.|||.+++..+..+.. .|++++|+.+
T Consensus       173 ~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~L  251 (458)
T 3nmz_A          173 MKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQ  251 (458)
T ss_dssp             HHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHG
T ss_pred             HHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHH
Confidence            99987 69999999999999999999941           34789999999999999888777776654 4569999999


Q ss_pred             hccccchhHHHHHHHHHHHhcCCC--CCCChhhHhhhHHHHHHhh-ccCChhHHHHHHHHHHHhccCCcHHHHHHH-HhC
Q 013228          133 LNKHAKLSMLRIATWTLSNFCAGK--PKPIFDQVRPALPALAQLV-HSNDKEVMTDACRALFYLSEGTNDEIQAVI-EAG  208 (447)
Q Consensus       133 l~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~l~~l~~ll-~~~~~~v~~~al~~l~~l~~~~~~~~~~~~-~~~  208 (447)
                      | .+.+.++++.++|+|.+|+...  .........|++|.|+++| ++.++.++..++.+|+|++...++....+. ..|
T Consensus       252 L-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~G  330 (458)
T 3nmz_A          252 L-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDG  330 (458)
T ss_dssp             G-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTT
T ss_pred             H-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcC
Confidence            9 6788999999999999999752  1223333479999999974 567899999999999999984444334555 689


Q ss_pred             cHHHHHHhcCCCCc----hhHhHHHHHHHHhhc---CChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcC
Q 013228          209 VCPRLVELLGHPSP----SVLTRALQTVVNIAA---GDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAG  281 (447)
Q Consensus       209 ~~~~L~~lL~~~~~----~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~  281 (447)
                      +++.|+.+|.+.++    .++..|+++|.|++.   .++..+..+.+.|+++.|+.+|.++ +..++++|+|+|+|++.+
T Consensus       331 al~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~-~~~v~~~A~~aL~nLa~~  409 (458)
T 3nmz_A          331 ALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSNACGTLWNLSAR  409 (458)
T ss_dssp             HHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCS-CHHHHHHHHHHHHHHHSS
T ss_pred             cHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCC-ChHHHHHHHHHHHHHHcC
Confidence            99999999987654    489999999999997   6788888899999999999999998 999999999999999988


Q ss_pred             CHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCC
Q 013228          282 NSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGG  324 (447)
Q Consensus       282 ~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~  324 (447)
                      ++++++.+++.|++|.|++++.+++..+++.|+++|.|++...
T Consensus       410 ~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          410 NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             CHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            8899999999999999999999999999999999999999864

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.5e-34  Score=285.51  Aligned_cols=397  Identities=16%  Similarity=0.142  Sum_probs=337.0

Q ss_pred             cccccC-CCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228            2 VAGVWS-DDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID   80 (447)
Q Consensus         2 v~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (447)
                      ++.|.+ ++++++..|+.+|.+++..  .+....+.+.|+++.|+++|++++ +.++..|+++|.+++...+..+..+.+
T Consensus        62 v~~L~~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~~~~v~~  138 (644)
T 2z6h_A           62 VRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGAKMAVRL  138 (644)
T ss_dssp             HHHHHSCCCHHHHHHHHHHHHHHTTS--HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchhHHHHHH
Confidence            445655 4899999999999988765  457788889999999999999998 999999999999999876778888899


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCC
Q 013228           81 HGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPI  160 (447)
Q Consensus        81 ~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~  160 (447)
                      .|+++.|+.++.++++.++..++.+|.+++...+..+..+.+.|+++.++.++........+..++.+|.+++.......
T Consensus       139 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~  218 (644)
T 2z6h_A          139 AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP  218 (644)
T ss_dssp             TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHH
T ss_pred             CCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHH
Confidence            99999999999999999999999999999987788888999999999999999766667888999999999997654444


Q ss_pred             hhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCCh
Q 013228          161 FDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD  240 (447)
Q Consensus       161 ~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~  240 (447)
                      .....++++.++.++.+.+..++..++++|.+++......   ....++++.|+.++.++++.++..++++|++++..++
T Consensus       219 ~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~  295 (644)
T 2z6h_A          219 AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY  295 (644)
T ss_dssp             HHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence            4445789999999999999999999999999999654321   1112679999999999999999999999999999888


Q ss_pred             hhHHHHHhcCChHHHHHhhccCCc-hhHHHHHHHHHHHHhcCCH---HHHHHHHHcCChHHHHHHHhcCc-hhHHHHHHH
Q 013228          241 FQTQCIINCGALPYLLGLLIHNHK-KSIKTDACWTISNITAGNS---EHIQAVIDAGLIGPLVNLLQNAE-FDIKNWAAR  315 (447)
Q Consensus       241 ~~~~~~~~~~~l~~l~~~l~~~~~-~~v~~~a~~~l~nl~~~~~---~~~~~l~~~~~~~~L~~~l~~~~-~~v~~~a~~  315 (447)
                      ..+..+.+.|+++.|+.++.+..+ ..++..++++|+|++...+   .....+.+.|+++.|+++|.+++ +.++..|++
T Consensus       296 ~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~  375 (644)
T 2z6h_A          296 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG  375 (644)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHH
Confidence            888889999999999999987423 7999999999999987433   22334778999999999999764 799999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCC----------------------HHHHHHHHHHHHHHHHhhhhhhhh
Q 013228          316 AISNATFGGTHEQIKYLVREGCIKPLCDLLLCAD----------------------PEIVTVFLKGLEKILKVGEAEKNM  373 (447)
Q Consensus       316 aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~----------------------~~~~~~a~~~l~~l~~~~~~~~~~  373 (447)
                      +|+|++...  +....+.+.|+++.|++++.+.+                      .+++..++.+|.+++....     
T Consensus       376 ~L~nLa~~~--~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~-----  448 (644)
T 2z6h_A          376 LIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVH-----  448 (644)
T ss_dssp             HHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHH-----
T ss_pred             HHHHHccCH--HHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHH-----
Confidence            999999853  34477889999999999987633                      3566777888888875432     


Q ss_pred             hhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 013228          374 DIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWC  420 (447)
Q Consensus       374 ~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  420 (447)
                               .+..+.+.|+++.|.+++.+++++++..|..+|.++..
T Consensus       449 ---------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~  486 (644)
T 2z6h_A          449 ---------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ  486 (644)
T ss_dssp             ---------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             ---------HHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence                     25678789999999999999999999999999888764

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=5.8e-34  Score=286.96  Aligned_cols=397  Identities=16%  Similarity=0.149  Sum_probs=335.0

Q ss_pred             cccccC-CCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228            2 VAGVWS-DDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID   80 (447)
Q Consensus         2 v~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (447)
                      ++.|.+ +++.++..|+.+|.+++..  ......+.+.|+++.|+++|++++ +.++..|+++|.+++...+..+..+.+
T Consensus       198 v~~L~~~~d~~vr~~Aa~aL~~Ls~~--~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~~~~v~~  274 (780)
T 2z6g_A          198 VRTMQNTNDVETARCTSGTLHNLSHH--REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGAKMAVRL  274 (780)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTHHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhhHHHHHH
Confidence            345554 4899999999999998765  455778888999999999999998 999999999999999977788888989


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCC
Q 013228           81 HGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPI  160 (447)
Q Consensus        81 ~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~  160 (447)
                      .|+++.|+.++.+++..++..++.+|.+++..++..+..+.+.++++.++.++........+..++.++.+++.......
T Consensus       275 ~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~  354 (780)
T 2z6g_A          275 AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP  354 (780)
T ss_dssp             TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHH
T ss_pred             cCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHH
Confidence            99999999999999999999999999999988888888888999999999999766666777889999999997653333


Q ss_pred             hhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCCh
Q 013228          161 FDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD  240 (447)
Q Consensus       161 ~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~  240 (447)
                      .....++++.|+.++.+.++.++..++++|.+++......   ....++++.|+.++.+.++.++..|+++|++|+..++
T Consensus       355 ~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~  431 (780)
T 2z6g_A          355 AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY  431 (780)
T ss_dssp             HHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH
T ss_pred             HHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH
Confidence            3344789999999999999999999999999999655331   1123678999999999999999999999999999888


Q ss_pred             hhHHHHHhcCChHHHHHhhccCCc-hhHHHHHHHHHHHHhcCCHH---HHHHHHHcCChHHHHHHHhcCch-hHHHHHHH
Q 013228          241 FQTQCIINCGALPYLLGLLIHNHK-KSIKTDACWTISNITAGNSE---HIQAVIDAGLIGPLVNLLQNAEF-DIKNWAAR  315 (447)
Q Consensus       241 ~~~~~~~~~~~l~~l~~~l~~~~~-~~v~~~a~~~l~nl~~~~~~---~~~~l~~~~~~~~L~~~l~~~~~-~v~~~a~~  315 (447)
                      ..+..+.+.|+++.|+.+|.+..+ ..++..|+++|+|++...++   ....+.+.++++.|++++.+++. .++..|++
T Consensus       432 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~  511 (780)
T 2z6g_A          432 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG  511 (780)
T ss_dssp             HHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHH
Confidence            888889999999999999986323 48999999999999875433   23467789999999999998764 99999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCC----------------------HHHHHHHHHHHHHHHHhhhhhhhh
Q 013228          316 AISNATFGGTHEQIKYLVREGCIKPLCDLLLCAD----------------------PEIVTVFLKGLEKILKVGEAEKNM  373 (447)
Q Consensus       316 aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~----------------------~~~~~~a~~~l~~l~~~~~~~~~~  373 (447)
                      +|+|++.  .+.....+.+.|+++.|++++.+.+                      ++++..++.+|.++.....     
T Consensus       512 aL~nLa~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~-----  584 (780)
T 2z6g_A          512 LIRNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIH-----  584 (780)
T ss_dssp             HHHHHHS--SHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHH-----
T ss_pred             HHHHHhc--CHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChh-----
Confidence            9999997  4455678889999999999987643                      3466677888888864321     


Q ss_pred             hhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 013228          374 DIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWC  420 (447)
Q Consensus       374 ~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  420 (447)
                               .+..+.+.|+++.|..++.+++++++..|..+|.++..
T Consensus       585 ---------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~  622 (780)
T 2z6g_A          585 ---------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ  622 (780)
T ss_dssp             ---------HHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred             ---------hHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence                     25678889999999999999999999999999888753

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.98  E-value=1.4e-31  Score=242.27  Aligned_cols=275  Identities=19%  Similarity=0.176  Sum_probs=238.4

Q ss_pred             CCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCC----------CCHHHHHHHHHHHHHHcCCChhhHHH
Q 013228            8 DDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMRE----------DYPQLQFEAAWALKNIVSGTSEDTKV   77 (447)
Q Consensus         8 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~----------~~~~v~~~a~~~L~~l~~~~~~~~~~   77 (447)
                      ++...+..|+++|.+++..  ++.++.+++.|+++.|+.+|.++          .++.+|..|+++|.+++.+++..+..
T Consensus        44 ~~~~~~~~A~~aL~nls~d--~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~  121 (354)
T 3nmw_A           44 PVEHQICPAVCVLMKLSFD--EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKAT  121 (354)
T ss_dssp             GGGGTHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            3346677999999999976  67899999999999999999521          22689999999999999977778877


Q ss_pred             HHhC-CChHHHHHhhCCCCHHHHHHHHHHHHHhhcC-ChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCC
Q 013228           78 VIDH-GAVPIFVKLLASPSDDIREQAVCALGNVAAD-SARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAG  155 (447)
Q Consensus        78 ~~~~-~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  155 (447)
                      +... |+++.|+.+|.++++++++.++|+|+||+.. ++..+..+.+.|++++|+++|..+.+.++++.++++|++|+..
T Consensus       122 i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~  201 (354)
T 3nmw_A          122 LCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH  201 (354)
T ss_dssp             HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc
Confidence            7655 5599999999999999999999999999975 5678889999999999999875667889999999999999984


Q ss_pred             C-CCCChhh-HhhhHHHHHHhhccCCh----hHHHHHHHHHHHhcc---CCcHHHHHHHHhCcHHHHHHhcCCCCchhHh
Q 013228          156 K-PKPIFDQ-VRPALPALAQLVHSNDK----EVMTDACRALFYLSE---GTNDEIQAVIEAGVCPRLVELLGHPSPSVLT  226 (447)
Q Consensus       156 ~-~~~~~~~-~~~~l~~l~~ll~~~~~----~v~~~al~~l~~l~~---~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~  226 (447)
                      . ....... ..+++|.|+.+|+++++    +++..++++|+|++.   ..++..+.+.+.|+++.|+.+|.+++..+++
T Consensus       202 ~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~  281 (354)
T 3nmw_A          202 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVS  281 (354)
T ss_dssp             CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHH
T ss_pred             ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHH
Confidence            4 2222223 47999999999987654    589999999999996   5666778889999999999999999999999


Q ss_pred             HHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHH
Q 013228          227 RALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEH  285 (447)
Q Consensus       227 ~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~  285 (447)
                      .|+++|+|++.+++..+..+.+.|+++.|++++.++ +..+++.|+|+|.|++.+.+..
T Consensus       282 ~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~~~~~~  339 (354)
T 3nmw_A          282 NACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANRPAK  339 (354)
T ss_dssp             HHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCCGG
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCHHH
Confidence            999999999988888889999999999999999998 9999999999999999876553

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.98  E-value=2.2e-31  Score=241.07  Aligned_cols=270  Identities=20%  Similarity=0.195  Sum_probs=233.2

Q ss_pred             HHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhhcCChhHHHHHHh
Q 013228           54 PQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLAS-----------PSDDIREQAVCALGNVAADSARCRDLVLS  122 (447)
Q Consensus        54 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-----------~~~~i~~~a~~~L~~l~~~~~~~~~~~~~  122 (447)
                      ...+.+|+++|.+++. ++++|+.+++.|++++|+.+|..           .++.+++.|+|+|.||+..++..+..+..
T Consensus        46 ~~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~  124 (354)
T 3nmw_A           46 EHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS  124 (354)
T ss_dssp             GGTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3556689999999999 58999999999999999999942           24789999999999999888777777754


Q ss_pred             -cCCHHHHHHHhccccchhHHHHHHHHHHHhcCCC--CCCChhhHhhhHHHHHHhh-ccCChhHHHHHHHHHHHhccCCc
Q 013228          123 -EEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK--PKPIFDQVRPALPALAQLV-HSNDKEVMTDACRALFYLSEGTN  198 (447)
Q Consensus       123 -~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~l~~l~~ll-~~~~~~v~~~al~~l~~l~~~~~  198 (447)
                       .|+++.|+.+| .+.+.++++.++|+|.+|+...  .........+++|.|+++| ++.++.+++.++.+|+|++...+
T Consensus       125 ~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~  203 (354)
T 3nmw_A          125 MKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT  203 (354)
T ss_dssp             CHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             cCCcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence             45599999999 6778899999999999999752  1223333479999999974 66789999999999999998554


Q ss_pred             HHHHHHH-HhCcHHHHHHhcCCCCc----hhHhHHHHHHHHhhc---CChhhHHHHHhcCChHHHHHhhccCCchhHHHH
Q 013228          199 DEIQAVI-EAGVCPRLVELLGHPSP----SVLTRALQTVVNIAA---GDDFQTQCIINCGALPYLLGLLIHNHKKSIKTD  270 (447)
Q Consensus       199 ~~~~~~~-~~~~~~~L~~lL~~~~~----~v~~~a~~~l~~l~~---~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~  270 (447)
                      +....+. ..|+++.|+.+|.++++    .++..|+++|.|++.   .++..+..+.+.|+++.|+.+|.++ +..+++.
T Consensus       204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~  282 (354)
T 3nmw_A          204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSN  282 (354)
T ss_dssp             HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHH
T ss_pred             hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHH
Confidence            4444555 68999999999987654    489999999999997   6777888899999999999999998 9999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCH
Q 013228          271 ACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTH  326 (447)
Q Consensus       271 a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~  326 (447)
                      |+|+|+|++.+++++++.+++.|++|.|++++.+++..+++.|+++|.|++.....
T Consensus       283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~  338 (354)
T 3nmw_A          283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA  338 (354)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred             HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence            99999999988889999999999999999999999999999999999999987443

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.96  E-value=6.9e-28  Score=211.17  Aligned_cols=240  Identities=28%  Similarity=0.412  Sum_probs=221.4

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHH
Q 013228           39 GVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRD  118 (447)
Q Consensus        39 ~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~  118 (447)
                      |.++.|+++|++++ ++++..|+++|.+++..+++.+..+.+.|+++.|+.++.++++.++..++++|++++.+++..+.
T Consensus         2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~   80 (252)
T 4hxt_A            2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK   80 (252)
T ss_dssp             CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence            57899999999999 99999999999999998888999999999999999999999999999999999999999888999


Q ss_pred             HHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCC-CChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 013228          119 LVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPK-PIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGT  197 (447)
Q Consensus       119 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~  197 (447)
                      .+.+.|+++.++.++ .+.+..++..++++|.+++...+. .......++++.++++++++++.++..++++|++++...
T Consensus        81 ~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~  159 (252)
T 4hxt_A           81 AIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP  159 (252)
T ss_dssp             HHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999 677899999999999999965422 222334789999999999999999999999999999888


Q ss_pred             cHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHH
Q 013228          198 NDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISN  277 (447)
Q Consensus       198 ~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~n  277 (447)
                      +...+.+.+.|+++.|+.++.++++.++..++++|++++..++.....+.+.|+++.+++++.++ ++.++..|+|+|+|
T Consensus       160 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~  238 (252)
T 4hxt_A          160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALEN  238 (252)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence            77777889999999999999999999999999999999998888888899999999999999998 99999999999999


Q ss_pred             HhcC
Q 013228          278 ITAG  281 (447)
Q Consensus       278 l~~~  281 (447)
                      ++..
T Consensus       239 l~~~  242 (252)
T 4hxt_A          239 IKSG  242 (252)
T ss_dssp             HHHT
T ss_pred             HHcC
Confidence            9874

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.96  E-value=8.8e-28  Score=210.44  Aligned_cols=239  Identities=34%  Similarity=0.493  Sum_probs=218.8

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHH
Q 013228           39 GVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRD  118 (447)
Q Consensus        39 ~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~  118 (447)
                      ...+.++++|++++ ++++..|+++|.++...+++.+..+.+.|+++.|+.++.++++.++..++++|++++.+++..+.
T Consensus        12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (252)
T 4db8_A           12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (252)
T ss_dssp             CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            46899999999999 89999999999886665778888999999999999999999999999999999999998888899


Q ss_pred             HHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCC-ChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 013228          119 LVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKP-IFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGT  197 (447)
Q Consensus       119 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~  197 (447)
                      .+.+.|+++.++.++ .++++.++..++++|.+++...+.. ......+++|.++.+++++++.++..++++|++++..+
T Consensus        91 ~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  169 (252)
T 4db8_A           91 AVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG  169 (252)
T ss_dssp             HHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999 6678999999999999999876444 33445789999999999999999999999999999888


Q ss_pred             cHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHH
Q 013228          198 NDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISN  277 (447)
Q Consensus       198 ~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~n  277 (447)
                      +.....+.+.|+++.|+.++.++++.++..|+++|++++..++.....+.+.|+++.++.++.++ ++.++..|+|+|+|
T Consensus       170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~  248 (252)
T 4db8_A          170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEK  248 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHT
T ss_pred             hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence            77778888999999999999999999999999999999988888888899999999999999998 99999999999999


Q ss_pred             Hhc
Q 013228          278 ITA  280 (447)
Q Consensus       278 l~~  280 (447)
                      ++.
T Consensus       249 l~~  251 (252)
T 4db8_A          249 LQS  251 (252)
T ss_dssp             TC-
T ss_pred             Hhc
Confidence            864

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.96  E-value=3.3e-26  Score=200.47  Aligned_cols=249  Identities=28%  Similarity=0.428  Sum_probs=226.3

Q ss_pred             hhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHH
Q 013228          166 PALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQC  245 (447)
Q Consensus       166 ~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~  245 (447)
                      +.+|.++.+|+++++.++..++++|.+++...+.....+.+.|+++.|+.++.++++.++..++++|++++..++.....
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~   81 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA   81 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence            46899999999999999999999999999888777788899999999999999999999999999999999988888888


Q ss_pred             HHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCC
Q 013228          246 IINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGT  325 (447)
Q Consensus       246 ~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~  325 (447)
                      +.+.|+++.++.++.++ +..++..++++|++++..+++....+.+.|+++.|+.++.++++.++..++++|++++.. +
T Consensus        82 ~~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~-~  159 (252)
T 4hxt_A           82 IVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG-P  159 (252)
T ss_dssp             HHHTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-C
T ss_pred             HHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-C
Confidence            99999999999999998 999999999999999988888899999999999999999999999999999999999986 5


Q ss_pred             HHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCH
Q 013228          326 HEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDND  405 (447)
Q Consensus       326 ~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~  405 (447)
                      +.....+.+.|+++.|+.++.++++.++..++++|.+++...+.             ....+.+.|+++.|.+++.++++
T Consensus       160 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-------------~~~~l~~~~~i~~L~~ll~~~~~  226 (252)
T 4hxt_A          160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTS-------------AIKAIVDAGGVEVLQKLLTSTDS  226 (252)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHH-------------HHHHHHHTTHHHHHHHGGGCSCH
T ss_pred             HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHH-------------HHHHHHHCCCHHHHHHHHCCCcH
Confidence            66778888999999999999999999999999999999874333             36677789999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCC
Q 013228          406 EIHEKSVKILETYWCGRVAGPQPG  429 (447)
Q Consensus       406 ~v~~~a~~~l~~~~~~~~~~~~~~  429 (447)
                      ++++.|.++|.++......+..++
T Consensus       227 ~v~~~a~~~L~~l~~~~~~~~~~~  250 (252)
T 4hxt_A          227 EVQKEAQRALENIKSGGWLEHHHH  250 (252)
T ss_dssp             HHHHHHHHHHHHHHHTCBCCC---
T ss_pred             HHHHHHHHHHHHHHcCCCcccccc
Confidence            999999999999988776665443

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.95  E-value=1.1e-26  Score=203.41  Aligned_cols=239  Identities=33%  Similarity=0.456  Sum_probs=215.6

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCC-CC
Q 013228           82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPK-PI  160 (447)
Q Consensus        82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~  160 (447)
                      ...+.+...|.+++++++..++++|.++....+..+..+.+.|+++.++.+| .+.+..++..++++|.+++...+. ..
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQ   90 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            4678999999999999999999999876655566677888999999999999 666789999999999999986533 23


Q ss_pred             hhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCCh
Q 013228          161 FDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD  240 (447)
Q Consensus       161 ~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~  240 (447)
                      .....+++|.++.+++++++.++..++++|++++...+.....+.+.|+++.|+.++.++++.++..++++|++++..++
T Consensus        91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~  170 (252)
T 4db8_A           91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN  170 (252)
T ss_dssp             HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence            33347899999999999999999999999999998887765778999999999999999999999999999999999888


Q ss_pred             hhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHh
Q 013228          241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNA  320 (447)
Q Consensus       241 ~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l  320 (447)
                      .....+.+.|+++.|+.++.++ ++.++..++++|+|++..+++....+.+.|+++.|+.++.+++++++..|+++|.++
T Consensus       171 ~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l  249 (252)
T 4db8_A          171 EQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL  249 (252)
T ss_dssp             HHHHHHHHTTCHHHHHHGGGCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred             HHHHHHHHCCCHHHHHHHHCCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            8888889999999999999998 999999999999999988889899999999999999999999999999999999999


Q ss_pred             cC
Q 013228          321 TF  322 (447)
Q Consensus       321 ~~  322 (447)
                      +.
T Consensus       250 ~~  251 (252)
T 4db8_A          250 QS  251 (252)
T ss_dssp             C-
T ss_pred             hc
Confidence            74

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.95  E-value=8.2e-26  Score=199.10  Aligned_cols=236  Identities=17%  Similarity=0.141  Sum_probs=198.6

Q ss_pred             hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHH-hcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHh
Q 013228          180 KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVE-LLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGL  258 (447)
Q Consensus       180 ~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~-lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~  258 (447)
                      .+-+..|+..|.+++...+ ....+.+.|+++.|+. +|.++++.++..|+++|++++..++..+..+++.|+++.|+.+
T Consensus        54 ~e~k~~Al~~L~~lv~~~d-na~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           54 QQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhChh-hHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            3567778999999997544 4566888999999999 9999999999999999999999999888999999999999999


Q ss_pred             hccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCh
Q 013228          259 LIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCI  338 (447)
Q Consensus       259 l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l  338 (447)
                      |+++.+..++..|+|+|+|++.+.+...+.+.+.|+++.|+.++.++++.++..|+|+|.+++.. +++.+..+.+.|++
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i  211 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMV  211 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHH
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCH
Confidence            98643789999999999999998888888899999999999999999999999999999999976 56788899999999


Q ss_pred             HHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCC-CHHHHHHHHHHHHH
Q 013228          339 KPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHD-NDEIHEKSVKILET  417 (447)
Q Consensus       339 ~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~-~~~v~~~a~~~l~~  417 (447)
                      +.|+.+|.+++++++..++.+|.+++...........  ...+.+...+++     .++.++.++ +.+++++|..++++
T Consensus       212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~--~~~~~l~~lL~~-----~~~~lq~~e~~~e~~~~~~~il~~  284 (296)
T 1xqr_A          212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECR--EPELGLEELLRH-----RCQLLQQHEEYQEELEFCEKLLQT  284 (296)
T ss_dssp             HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHH--CGGGCHHHHHHH-----HHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHh--ccHHHHHHHHHH-----HHHHccchHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999987543321110  011235555653     466777665 79999999999999


Q ss_pred             hcCCCCC
Q 013228          418 YWCGRVA  424 (447)
Q Consensus       418 ~~~~~~~  424 (447)
                      ||...++
T Consensus       285 ~f~~~~~  291 (296)
T 1xqr_A          285 CFSSPAD  291 (296)
T ss_dssp             HCC----
T ss_pred             HcCCCCC
Confidence            9976544

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.93  E-value=4.1e-24  Score=206.06  Aligned_cols=389  Identities=13%  Similarity=0.112  Sum_probs=291.7

Q ss_pred             CCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHH
Q 013228            7 SDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPI   86 (447)
Q Consensus         7 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~   86 (447)
                      ++.......+++-+.+.++.  ....+..+..++++.|.+++++   +.++..|+-+|..+..........+.  ...+.
T Consensus       266 ~~~~~~~~~a~L~lLsaACi--~~~cR~~I~~~~~~~L~~~l~~---~~ir~lAavvL~KL~~~~~~~~~si~--~La~~  338 (778)
T 3opb_A          266 EEQDLQFTKELLRLLSSACI--DETMRTYITENYLQLLERSLNV---EDVQIYSALVLVKTWSFTKLTCINLK--QLSEI  338 (778)
T ss_dssp             SSCCHHHHHHHHHHHHHHCC--SHHHHHHHHHHHHHHHHHHTTS---GGGHHHHHHHHHHHTGGGTCTTCCHH--HHHHH
T ss_pred             cccchHHHHHHHHHHHHHhC--CcHHHHHHHHhHHHHHHHHhcc---HHHHHHHHHHHHHHhcCCCCCcCcHH--HHHHH
Confidence            33334455666666677766  4455666677889999999864   47899999999998763322111111  24566


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHH-hcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCCh----
Q 013228           87 FVKLLASPSDDIREQAVCALGNVAADSARCRDLVL-SEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIF----  161 (447)
Q Consensus        87 L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~----  161 (447)
                      +.+.+.+++.+-++.|++.|+.++.+.. .++.+. +.+++..|+.++....+..+...++.++.|++...+....    
T Consensus       339 ~~~~L~~~~~~~~~~AvEgLaYLSl~~~-VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~  417 (778)
T 3opb_A          339 FINAISRRIVPKVEMSVEALAYLSLKAS-VKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXX  417 (778)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHHHTTSSH-HHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC-
T ss_pred             HHHHHhcCCccHHHHHHHHHHHHhCCHH-HHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhh
Confidence            7777777666669999999999998766 555555 4566999999996556778999999999999986532100    


Q ss_pred             ---------------------------------h--hHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHH
Q 013228          162 ---------------------------------D--QVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIE  206 (447)
Q Consensus       162 ---------------------------------~--~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~  206 (447)
                                                       .  ...|++|.|+.++.++++.++..++++|.+++... .....+++
T Consensus       418 l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~-~~R~~lvq  496 (778)
T 3opb_A          418 XXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSK-NFIPQLAQ  496 (778)
T ss_dssp             -----------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSG-GGHHHHHH
T ss_pred             hhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHHHHHH
Confidence                                             0  12689999999999999999999999999999664 44567889


Q ss_pred             hCcHHHHHHhcCCCCch---hHhHHHHHHHHhhcCChhhHHHHHh----cCChHHHHHhhcc-CCch------------h
Q 013228          207 AGVCPRLVELLGHPSPS---VLTRALQTVVNIAAGDDFQTQCIIN----CGALPYLLGLLIH-NHKK------------S  266 (447)
Q Consensus       207 ~~~~~~L~~lL~~~~~~---v~~~a~~~l~~l~~~~~~~~~~~~~----~~~l~~l~~~l~~-~~~~------------~  266 (447)
                      .|+++.|+.++.+....   .+..|+.+|++++...+...  ++.    .++++.|+.+|.. +...            .
T Consensus       497 qGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l  574 (778)
T 3opb_A          497 QGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL--IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLT  574 (778)
T ss_dssp             TTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHH
T ss_pred             CCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH--HcCCCccccchHHHHHHcCCCCCcccccccccccccHH
Confidence            99999999999876544   89999999999985443221  121    3789999999983 2111            1


Q ss_pred             HHHHHHHHHHHHhcCC----HHHHHHHHHc-CChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHH-HHHHHc-----
Q 013228          267 IKTDACWTISNITAGN----SEHIQAVIDA-GLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQI-KYLVRE-----  335 (447)
Q Consensus       267 v~~~a~~~l~nl~~~~----~~~~~~l~~~-~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~-~~l~~~-----  335 (447)
                      -+.+|+.+|.|++..+    ++.++.+++. |+++.|..++.+++..+|+.|+++++|++..  ++.+ ..+.+.     
T Consensus       575 ~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~--~e~i~~k~~~~~~~~~  652 (778)
T 3opb_A          575 DNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSH--PLTIAAKFFNLENPQS  652 (778)
T ss_dssp             HHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTS--GGGTGGGTSCCSSHHH
T ss_pred             HHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHhhcCchh
Confidence            2779999999999865    3456778885 9999999999999999999999999999973  3432 233221     


Q ss_pred             -CChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcC--CCHHHHHHHH
Q 013228          336 -GCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSH--DNDEIHEKSV  412 (447)
Q Consensus       336 -~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~--~~~~v~~~a~  412 (447)
                       +.++.|+.++++++.+++.+|.++|.++....+..            ....+...++++.+..+...  ++++++.++.
T Consensus       653 ~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~i------------a~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~  720 (778)
T 3opb_A          653 LRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLI------------AKELLTKKELIENAIQVFADQIDDIELRQRLL  720 (778)
T ss_dssp             HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHH------------HHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             hccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHH------------HHHHHHccccHHHHHHHHhccCCCHHHHHHHH
Confidence             23789999999999999999999999996543332            13344445899999998777  8999999999


Q ss_pred             HHHHHhcC
Q 013228          413 KILETYWC  420 (447)
Q Consensus       413 ~~l~~~~~  420 (447)
                      .++.+++.
T Consensus       721 ~~l~NL~~  728 (778)
T 3opb_A          721 MLFFGLFE  728 (778)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            99999986

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2.3e-24  Score=207.71  Aligned_cols=376  Identities=14%  Similarity=0.102  Sum_probs=285.3

Q ss_pred             HHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC-CChHHHH
Q 013228           10 NNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH-GAVPIFV   88 (447)
Q Consensus        10 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~   88 (447)
                      ..++..|+..|.++.+.... ....+.  .+.+.+.++|.+++ .+.+..|++.|..++. .++.+..+.+. |+++.|+
T Consensus       308 ~~ir~lAavvL~KL~~~~~~-~~~si~--~La~~~~~~L~~~~-~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv  382 (778)
T 3opb_A          308 EDVQIYSALVLVKTWSFTKL-TCINLK--QLSEIFINAISRRI-VPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILL  382 (778)
T ss_dssp             GGGHHHHHHHHHHHTGGGTC-TTCCHH--HHHHHHHHHTTTCC-HHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCC-CcCcHH--HHHHHHHHHHhcCC-ccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHH
Confidence            57899999999999876422 111111  26788888888877 6679999999999998 67778877766 5699999


Q ss_pred             HhhCC-CCHHHHHHHHHHHHHhhcCChh--------------------------------------HHHHHHhcCCHHHH
Q 013228           89 KLLAS-PSDDIREQAVCALGNVAADSAR--------------------------------------CRDLVLSEEALIPL  129 (447)
Q Consensus        89 ~ll~~-~~~~i~~~a~~~L~~l~~~~~~--------------------------------------~~~~~~~~~~l~~l  129 (447)
                      .++++ .+..+...++.+|.|++...+.                                      .+..+.+.|+++.|
T Consensus       383 ~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~L  462 (778)
T 3opb_A          383 TMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFL  462 (778)
T ss_dssp             HHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHH
T ss_pred             HHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHH
Confidence            99985 6788999999999999963321                                      34566788999999


Q ss_pred             HHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChh---HHHHHHHHHHHhccCCcHHHHHHHH
Q 013228          130 LTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKE---VMTDACRALFYLSEGTNDEIQAVIE  206 (447)
Q Consensus       130 ~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~---v~~~al~~l~~l~~~~~~~~~~~~~  206 (447)
                      +.++ .+.++.+++.++|+|.+++.+...+......|+++.|+.++.+....   .+..|+.+|.+++...+... .+-.
T Consensus       463 v~Ll-~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~-~f~~  540 (778)
T 3opb_A          463 KREM-HNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL-IFKK  540 (778)
T ss_dssp             HHHG-GGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH-HSSS
T ss_pred             HHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH-HcCC
Confidence            9999 67788999999999999998765555555589999999999877544   89999999999995544332 1211


Q ss_pred             ---hCcHHHHHHhcCC-CCc-------------hhHhHHHHHHHHhhcCC----hhhHHHHHhc-CChHHHHHhhccCCc
Q 013228          207 ---AGVCPRLVELLGH-PSP-------------SVLTRALQTVVNIAAGD----DFQTQCIINC-GALPYLLGLLIHNHK  264 (447)
Q Consensus       207 ---~~~~~~L~~lL~~-~~~-------------~v~~~a~~~l~~l~~~~----~~~~~~~~~~-~~l~~l~~~l~~~~~  264 (447)
                         .|+++.|+.+|.. +..             .-+..|+.+|.||+..+    +..+..++.. |+++.|..++.++ +
T Consensus       541 ~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~-n  619 (778)
T 3opb_A          541 YSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDE-N  619 (778)
T ss_dssp             SCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCS-S
T ss_pred             CccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCC-C
Confidence               3889999999983 221             12678999999999876    2345667775 8999999999998 9


Q ss_pred             hhHHHHHHHHHHHHhcCCHHHH-HHHHHcC------ChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHc-C
Q 013228          265 KSIKTDACWTISNITAGNSEHI-QAVIDAG------LIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVRE-G  336 (447)
Q Consensus       265 ~~v~~~a~~~l~nl~~~~~~~~-~~l~~~~------~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~-~  336 (447)
                      ..+|+.|+++++|++.. ++.+ +.+.+.+      .++.|+.++.+++.++|+.|+++|.+++.. .+.....+++. +
T Consensus       620 ~~VrrAA~elI~NL~~~-~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~-~~~ia~~ll~~~~  697 (778)
T 3opb_A          620 VPLQRSTLELISNMMSH-PLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT-IPLIAKELLTKKE  697 (778)
T ss_dssp             HHHHHHHHHHHHHHHTS-GGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH-CHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhCC-cHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC-ChHHHHHHHHccc
Confidence            99999999999999874 3433 3443222      378899999999999999999999999654 45666777776 7


Q ss_pred             ChHHHHhhccC--CCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcC
Q 013228          337 CIKPLCDLLLC--ADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSH  402 (447)
Q Consensus       337 ~l~~L~~ll~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~  402 (447)
                      +++.++.++.+  ++++++..++.++.|++........       ...+..........+.+.+++.+
T Consensus       698 gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~-------~~~~~~~~~~~~l~~~l~~~lk~  758 (778)
T 3opb_A          698 LIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGT-------NEVYPLLQENQKLKDALNMSLKR  758 (778)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTT-------TSCCHHHHSCHHHHHHHHHHHSS
T ss_pred             cHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCC-------hHHHHHHhcChHHHHHHHHHHhC
Confidence            89999999998  8999999999999999975432211       11123333344455556665443

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.93  E-value=6.4e-24  Score=180.37  Aligned_cols=199  Identities=38%  Similarity=0.536  Sum_probs=185.8

Q ss_pred             hhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHH
Q 013228          165 RPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQ  244 (447)
Q Consensus       165 ~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~  244 (447)
                      .+..+.+..+++++++.++..++++|.+++..++.....+.+.|+++.|+.+|.++++.++..|+++|++++.+++....
T Consensus        11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (210)
T 4db6_A           11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (210)
T ss_dssp             --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence            67788999999999999999999999999988877778899999999999999999999999999999999988888888


Q ss_pred             HHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCC
Q 013228          245 CIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGG  324 (447)
Q Consensus       245 ~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~  324 (447)
                      .+++.|+++.++.+|.++ +..++..|+|+|+|++..+++..+.+++.|+++.|+.++.++++.++..|+++|.+++.. 
T Consensus        91 ~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~-  168 (210)
T 4db6_A           91 AVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-  168 (210)
T ss_dssp             HHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-
T ss_pred             HHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-
Confidence            899999999999999999 999999999999999998888888999999999999999999999999999999999985 


Q ss_pred             CHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 013228          325 THEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILK  365 (447)
Q Consensus       325 ~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~  365 (447)
                      +++....+.+.|+++.|+.++.+++++++..|+++|.++..
T Consensus       169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            57778888999999999999999999999999999999853

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.92  E-value=2.1e-23  Score=177.12  Aligned_cols=199  Identities=32%  Similarity=0.440  Sum_probs=180.5

Q ss_pred             ccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhH
Q 013228           37 PFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARC  116 (447)
Q Consensus        37 ~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~  116 (447)
                      ..+..+.|+.+|++++ ++++..|+++|.+++.++++.+..+.+.|+++.|+.+|.++++.++..++++|++++.+++..
T Consensus        10 ~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~   88 (210)
T 4db6_A           10 HGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ   88 (210)
T ss_dssp             ---CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             ccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence            4578999999999999 999999999999999888999999999999999999999999999999999999999888888


Q ss_pred             HHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCC-hhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 013228          117 RDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPI-FDQVRPALPALAQLVHSNDKEVMTDACRALFYLSE  195 (447)
Q Consensus       117 ~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~  195 (447)
                      +..+.+.|+++.++.+| .+.+..++..++|+|.+++...+... .....+++|.|+.+++++++.++..++++|++++.
T Consensus        89 ~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  167 (210)
T 4db6_A           89 IQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS  167 (210)
T ss_dssp             HHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            89999999999999999 67789999999999999997653322 23347899999999999999999999999999998


Q ss_pred             CCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhc
Q 013228          196 GTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAA  237 (447)
Q Consensus       196 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~  237 (447)
                      .++.....+.+.|+++.|+.++.++++.++..|+++|.+++.
T Consensus       168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            877777888899999999999999999999999999999975

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.90  E-value=2.3e-22  Score=177.12  Aligned_cols=239  Identities=14%  Similarity=0.098  Sum_probs=192.0

Q ss_pred             HHHHHHhhcCCC-----------CHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHH
Q 013228           41 VPRFVEFLMRED-----------YPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVK-LLASPSDDIREQAVCALGN  108 (447)
Q Consensus        41 v~~L~~ll~~~~-----------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-ll~~~~~~i~~~a~~~L~~  108 (447)
                      ++..+..|.++.           +.+-+..|+..|..++. +.++...+.+.|++++|+. +|.++++.++..|+|+|++
T Consensus        30 mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~  108 (296)
T 1xqr_A           30 MKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGT  108 (296)
T ss_dssp             HHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            455666666642           13578899999999998 6778888999999999999 9999999999999999999


Q ss_pred             hhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCC-hhhHhhhHHHHHHhhccCChhHHHHHH
Q 013228          109 VAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPI-FDQVRPALPALAQLVHSNDKEVMTDAC  187 (447)
Q Consensus       109 l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~l~~l~~ll~~~~~~v~~~al  187 (447)
                      ++.+++.+++.+.+.|++++|+.+|..+++..+++.|+|+|++++++.+... .....+++|.|+.+|++++..++..++
T Consensus       109 ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~  188 (296)
T 1xqr_A          109 CSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSA  188 (296)
T ss_dssp             HHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence            9999999999999999999999999655678999999999999998763322 233468999999999999999999999


Q ss_pred             HHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhc--CC---hHHHHHhhccC
Q 013228          188 RALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINC--GA---LPYLLGLLIHN  262 (447)
Q Consensus       188 ~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~--~~---l~~l~~~l~~~  262 (447)
                      |+|++++..+++....+.+.|+++.|+.+|.+++..++..++++|++++...+.........  .+   ++.-++-+++.
T Consensus       189 ~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~  268 (296)
T 1xqr_A          189 FLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQH  268 (296)
T ss_dssp             HHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccch
Confidence            99999998877788889999999999999999999999999999999998865443332221  11   11123333322


Q ss_pred             C-chhHHHHHHHHHHHHhc
Q 013228          263 H-KKSIKTDACWTISNITA  280 (447)
Q Consensus       263 ~-~~~v~~~a~~~l~nl~~  280 (447)
                      + ..++...+..++.++..
T Consensus       269 e~~~e~~~~~~~il~~~f~  287 (296)
T 1xqr_A          269 EEYQEELEFCEKLLQTCFS  287 (296)
T ss_dssp             GGGHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHcC
Confidence            1 34566666666666643

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.88  E-value=8.5e-22  Score=165.74  Aligned_cols=197  Identities=18%  Similarity=0.152  Sum_probs=170.3

Q ss_pred             CHHHHHHhhcCCCCH--HHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHH
Q 013228           40 VVPRFVEFLMREDYP--QLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCR  117 (447)
Q Consensus        40 ~v~~L~~ll~~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~  117 (447)
                      .+|.++++|++++ +  +++..|+++|.+++..+++.+..+.+.|+|++|+.+|.++++++++.|+|+|.||+.+++..+
T Consensus         9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            6899999999998 6  899999999999998789999999999999999999999999999999999999999888899


Q ss_pred             HHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhc----------------cCChh
Q 013228          118 DLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVH----------------SNDKE  181 (447)
Q Consensus       118 ~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~----------------~~~~~  181 (447)
                      ..+.+.|++++|+.+|..+.+.++++.++.+|++|+..... +.....+++|.|+.++.                ..++.
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~-k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~  166 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKL-KNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD  166 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGG-HHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred             HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhh-HHHHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence            99999999999999995567889999999999999987533 34445678898887653                13679


Q ss_pred             HHHHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHhcCC------CCchhHhHHHHHHHHhhcC
Q 013228          182 VMTDACRALFYLSEGTNDEIQAVIEA-GVCPRLVELLGH------PSPSVLTRALQTVVNIAAG  238 (447)
Q Consensus       182 v~~~al~~l~~l~~~~~~~~~~~~~~-~~~~~L~~lL~~------~~~~v~~~a~~~l~~l~~~  238 (447)
                      ++..+..+|+|++..+++..+.+.+. |+++.|+.+++.      .+...++.++.+|.||+..
T Consensus       167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            99999999999998776666777765 678999999854      3567889999999999864

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.86  E-value=1e-21  Score=165.21  Aligned_cols=192  Identities=18%  Similarity=0.203  Sum_probs=161.5

Q ss_pred             CcccccCCCH--HHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHH
Q 013228            1 MVAGVWSDDN--NMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVV   78 (447)
Q Consensus         1 lv~~l~s~~~--~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~   78 (447)
                      +|++|+++++  +++..|++.+.+++.++ ++....+++.|++|.|+++|++++ +++|+.|+++|.+++.++++++..+
T Consensus        13 lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~nk~~I   90 (233)
T 3tt9_A           13 AVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDNDNKLEV   90 (233)
T ss_dssp             HHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            4678999988  89999999999998764 667788999999999999999988 9999999999999999889999999


Q ss_pred             HhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhc---------------cccchhHH
Q 013228           79 IDHGAVPIFVKLLA-SPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLN---------------KHAKLSML  142 (447)
Q Consensus        79 ~~~~~i~~L~~ll~-~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~---------------~~~~~~~~  142 (447)
                      .+.|+|+.|+++|. +++.++++.++.+|++|+..+. .+..+.+ +++++|+.++.               ...+.+++
T Consensus        91 ~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~-~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~  168 (233)
T 3tt9_A           91 AELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK-LKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFDIF  168 (233)
T ss_dssp             HHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG-GHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHH
T ss_pred             HHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh-hHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHHHH
Confidence            99999999999998 5789999999999999997655 5666655 46888888652               01256899


Q ss_pred             HHHHHHHHHhcCCCCCCChhhH--hhhHHHHHHhhcc------CChhHHHHHHHHHHHhccC
Q 013228          143 RIATWTLSNFCAGKPKPIFDQV--RPALPALAQLVHS------NDKEVMTDACRALFYLSEG  196 (447)
Q Consensus       143 ~~a~~~L~~l~~~~~~~~~~~~--~~~l~~l~~ll~~------~~~~v~~~al~~l~~l~~~  196 (447)
                      +++..+|.||+...+..+..+.  .|+++.|+.+++.      .+.+.++.++.+|+||+..
T Consensus       169 ~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          169 YNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            9999999999986533333332  5788999999884      3678899999999999854

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.82  E-value=6.6e-19  Score=173.53  Aligned_cols=343  Identities=12%  Similarity=0.111  Sum_probs=249.1

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChh-HH
Q 013228           39 GVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSAR-CR  117 (447)
Q Consensus        39 ~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~-~~  117 (447)
                      .++|.+.+++++++ +.+|..++.+|+.++.....   ......+++.+..++.++++.+|..++++|+.++...+. .+
T Consensus       242 ~~~~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~  317 (588)
T 1b3u_A          242 LVMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCR  317 (588)
T ss_dssp             HTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTH
T ss_pred             HHHHHHHHHccCCC-HHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhh
Confidence            36666777777666 67888888888777652111   112335678888999989999999999999998854321 11


Q ss_pred             HHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 013228          118 DLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGT  197 (447)
Q Consensus       118 ~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~  197 (447)
                      ........++.+..++ .+.++.++..+++++..++....  .......++|.+..++++.++.++..++.++..+....
T Consensus       318 ~~~~~~~l~p~l~~~l-~d~~~~vR~~a~~~l~~l~~~~~--~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~  394 (588)
T 1b3u_A          318 ENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPILG--KDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI  394 (588)
T ss_dssp             HHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHHC--HHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHS
T ss_pred             hhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhh--HhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhc
Confidence            1111234566777777 77788999999999998875421  11223568899999999999999999999988887533


Q ss_pred             cHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHH
Q 013228          198 NDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISN  277 (447)
Q Consensus       198 ~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~n  277 (447)
                      ...   .....+++.+..++.++++.+|..++.+++.++......   .....+++.+...+.++ +..+|..|+.+++.
T Consensus       395 ~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~  467 (588)
T 1b3u_A          395 GIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLVDH-VYAIREAATSNLKK  467 (588)
T ss_dssp             CHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG---GCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHH
T ss_pred             CHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHH
Confidence            221   122357888889999999999999999999987522111   11223577888889888 89999999999999


Q ss_pred             HhcC-CHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHH
Q 013228          278 ITAG-NSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVF  356 (447)
Q Consensus       278 l~~~-~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a  356 (447)
                      ++.. +++    .....++|.+..++.++++.+|..++++++.++.....+    .....+++.|..++.+++++++..+
T Consensus       468 l~~~~~~~----~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~l~d~~~~Vr~~a  539 (588)
T 1b3u_A          468 LVEKFGKE----WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD----ITTKHMLPTVLRMAGDPVANVRFNV  539 (588)
T ss_dssp             HHHHHCHH----HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH----HHHHHTHHHHHHGGGCSCHHHHHHH
T ss_pred             HHHHhCch----hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHHhhCCCCCchHHHHH
Confidence            9763 222    123448888888888889999999999999997632211    1223578999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 013228          357 LKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYW  419 (447)
Q Consensus       357 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  419 (447)
                      ++++..+.......                +.....++.|..+.++++++|+..|...+..+-
T Consensus       540 ~~~l~~l~~~~~~~----------------~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~  586 (588)
T 1b3u_A          540 AKSLQKIGPILDNS----------------TLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HHHHHHHGGGSCHH----------------HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhchh----------------hhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence            99999998653221                112445677888889999999999999998764

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.81  E-value=2.1e-18  Score=169.96  Aligned_cols=375  Identities=12%  Similarity=0.100  Sum_probs=279.2

Q ss_pred             ccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCC
Q 013228            3 AGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHG   82 (447)
Q Consensus         3 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~   82 (447)
                      ++++++++.++..|+..|..++...+.    ......++|.+..++++++ +.+|..|+.+|..++...+.   ......
T Consensus       171 ~l~~d~~~~VR~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~---~~~~~~  242 (588)
T 1b3u_A          171 NLCSDDTPMVRRAAASKLGEFAKVLEL----DNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQ---EDLEAL  242 (588)
T ss_dssp             HHHTCSCHHHHHHHHHHHHHHHHTSCH----HHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCH---HHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHhcH----HhHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCH---HHHHHH
Confidence            345778899999999999998865311    1223457888999998888 89999999999998763222   112234


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCCh-
Q 013228           83 AVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIF-  161 (447)
Q Consensus        83 ~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~-  161 (447)
                      +++.+..++.++++.+|..++.+|+.++.....  + ......++.++..+ .++++.++..+++++..++...+.... 
T Consensus       243 ~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~-~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~  318 (588)
T 1b3u_A          243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--E-ITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENLSADCRE  318 (588)
T ss_dssp             THHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--H-HHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTSCTTTHH
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--c-cchhHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHhChhhhh
Confidence            678888888889999999999999999843211  1 12234578888888 678889999999999999876533211 


Q ss_pred             -hhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCCh
Q 013228          162 -DQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD  240 (447)
Q Consensus       162 -~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~  240 (447)
                       .....++|.+..+++++++.++..+++++..++......   .....+++.+..++.++++.+|..++.+++.++....
T Consensus       319 ~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~  395 (588)
T 1b3u_A          319 NVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG  395 (588)
T ss_dssp             HHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH---HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcC
Confidence             345778899999999999999999999999887432221   1223578889999999999999999999988875432


Q ss_pred             hhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHH
Q 013228          241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAG-NSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISN  319 (447)
Q Consensus       241 ~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~  319 (447)
                      ..   .....+++.+..++.+. +..+|..++.+++.++.. +++    .....++|.+...+.+++..+|..|+.+++.
T Consensus       396 ~~---~~~~~~lp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~  467 (588)
T 1b3u_A          396 IR---QLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVE----FFDEKLNSLCMAWLVDHVYAIREAATSNLKK  467 (588)
T ss_dssp             HH---HHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGG----GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred             HH---HHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHcCHH----HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            11   11234677888888887 999999999999998752 111    1112367888888888899999999999999


Q ss_pred             hcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHH
Q 013228          320 ATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENL  399 (447)
Q Consensus       320 l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l  399 (447)
                      ++....++.    ....+++.|..++.+.+..++..+++++..+.......                ......++.|.++
T Consensus       468 l~~~~~~~~----~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~----------------~~~~~~~~~l~~~  527 (588)
T 1b3u_A          468 LVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD----------------ITTKHMLPTVLRM  527 (588)
T ss_dssp             HHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH----------------HHHHHTHHHHHHG
T ss_pred             HHHHhCchh----HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH----------------HHHHHHHHHHHhh
Confidence            986433321    12347888888888899999999999999998753321                1124567888888


Q ss_pred             hcCCCHHHHHHHHHHHHHhcC
Q 013228          400 RSHDNDEIHEKSVKILETYWC  420 (447)
Q Consensus       400 ~~~~~~~v~~~a~~~l~~~~~  420 (447)
                      ..+++++|+..+.+.+..++.
T Consensus       528 l~d~~~~Vr~~a~~~l~~l~~  548 (588)
T 1b3u_A          528 AGDPVANVRFNVAKSLQKIGP  548 (588)
T ss_dssp             GGCSCHHHHHHHHHHHHHHGG
T ss_pred             CCCCCchHHHHHHHHHHHHHH
Confidence            899999999999999988875

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.80  E-value=1e-18  Score=179.42  Aligned_cols=350  Identities=15%  Similarity=0.161  Sum_probs=254.9

Q ss_pred             cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHH--
Q 013228            2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVI--   79 (447)
Q Consensus         2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~--   79 (447)
                      ++.|.++++.+|..++.++..++.......     -.++++.|++.+++++ +.+++.++.+|+.++...+.....-.  
T Consensus        96 l~~l~~~~~~vr~~~a~~i~~ia~~~~~~~-----wp~ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~~~~~~~~~~  169 (852)
T 4fdd_A           96 LNNIGDSSPLIRATVGILITTIASKGELQN-----WPDLLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEILDSDVLD  169 (852)
T ss_dssp             HTTTTCSSHHHHHHHHHHHHHHHHHTTTTT-----CTTHHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHTTHHHHCSSS
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHhcCccc-----cHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHHhchhhhc
Confidence            456788889999999999999998742211     1458999999999988 89999999999999874333211100  


Q ss_pred             --hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCC
Q 013228           80 --DHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKP  157 (447)
Q Consensus        80 --~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~  157 (447)
                        -..+++.+++.+.++++.+|..|++++.++....+...... -...++.+...+ .+.+..++..++++|..++...+
T Consensus       170 ~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~-~~~~l~~l~~~~-~d~~~~vr~~a~~~L~~l~~~~~  247 (852)
T 4fdd_A          170 RPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLH-IDSFIENLFALA-GDEEPEVRKNVCRALVMLLEVRM  247 (852)
T ss_dssp             SCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTS-HHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHHHHCH
T ss_pred             chHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHhCH
Confidence              12356777788888999999999999998886543211000 013466677766 67788999999999999997654


Q ss_pred             CCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHH---hCcHHHHHHhc-----------CC----
Q 013228          158 KPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIE---AGVCPRLVELL-----------GH----  219 (447)
Q Consensus       158 ~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~---~~~~~~L~~lL-----------~~----  219 (447)
                      .........+++.+...+.+.++.++..++.++..++......  ....   ..+++.++..+           .+    
T Consensus       248 ~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~--~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed  325 (852)
T 4fdd_A          248 DRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICK--DVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGG  325 (852)
T ss_dssp             HHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHH--HHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHH--HHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccc
Confidence            3322334678888889999999999999999999998654221  1111   14566676666           33    


Q ss_pred             -------CCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHc
Q 013228          220 -------PSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDA  292 (447)
Q Consensus       220 -------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~  292 (447)
                             .++.+|..+..++..++...+..   ++. .+++.+...+.++ ++.+|..|++++++++.+..+...... .
T Consensus       326 ~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~~-~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~~l-~  399 (852)
T 4fdd_A          326 SGGDDTISDWNLRKCSAAALDVLANVYRDE---LLP-HILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIPYL-P  399 (852)
T ss_dssp             -------CCCCHHHHHHHHHHHHHHHHGGG---GHH-HHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGGGH-H
T ss_pred             cccccccccchHHHHHHHHHHHHHHhccHH---HHH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHHHH-H
Confidence                   34567999999999998644322   111 3677888888888 999999999999999987665444333 3


Q ss_pred             CChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHH-HHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 013228          293 GLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHE-QIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEA  369 (447)
Q Consensus       293 ~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~-~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~  369 (447)
                      ++++.++..+.++++.+|..|++++++++....+. ....  -.++++.|+..+.+.++.++..++++|.++++....
T Consensus       400 ~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~--~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~  475 (852)
T 4fdd_A          400 ELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY--LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT  475 (852)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTT--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhH
Confidence            47899999999999999999999999998631110 0011  123678888888889999999999999999976543

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.79  E-value=3.3e-18  Score=175.56  Aligned_cols=386  Identities=13%  Similarity=0.116  Sum_probs=270.9

Q ss_pred             cCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChH
Q 013228            6 WSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVP   85 (447)
Q Consensus         6 ~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~   85 (447)
                      .+.++.+|..|+..|.+..... -.....-.+..+-+.+++.|.+++ +.+|..++.+++.++.....  .  .-.+.++
T Consensus        58 ~~~~~~vR~~a~~~Lkn~i~~~-w~~~~~~~~~~ik~~ll~~l~~~~-~~vr~~~a~~i~~ia~~~~~--~--~wp~ll~  131 (852)
T 4fdd_A           58 KSEDEPTRSLSGLILKNNVKAH-FQNFPNGVTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGEL--Q--NWPDLLP  131 (852)
T ss_dssp             TTSCHHHHHHHHHHHHHHTTTS-GGGCCHHHHHHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHHHTTT--T--TCTTHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHHc-cCCCCHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcCc--c--ccHHHHH
Confidence            5678899999999999887642 111111123345667778888887 89999999999999873211  0  1125789


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHH----hcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCCh
Q 013228           86 IFVKLLASPSDDIREQAVCALGNVAADSARCRDLVL----SEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIF  161 (447)
Q Consensus        86 ~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~----~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~  161 (447)
                      .|+..+.++++.+++.++.+|+.++...+.....-.    -...++.+++.+ .+++..++..+++++..+....+....
T Consensus       132 ~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l-~~~~~~vR~~A~~aL~~~~~~~~~~~~  210 (852)
T 4fdd_A          132 KLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFF-KHSSPKIRSHAVACVNQFIISRTQALM  210 (852)
T ss_dssp             HHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTT-TCSSHHHHHHHHHHHHTTTTTTCHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhcccHHHH
Confidence            999999999999999999999999865432211000    012345555555 567889999999999988765432212


Q ss_pred             hhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChh
Q 013228          162 DQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDF  241 (447)
Q Consensus       162 ~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~  241 (447)
                      .....+++.+..++.++++.++..+++++..++...+......++ ++++.++..+.+.++.++..|+.++..++.... 
T Consensus       211 ~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~-  288 (852)
T 4fdd_A          211 LHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENVALEACEFWLTLAEQPI-  288 (852)
T ss_dssp             TSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTT-
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchh-
Confidence            233578889999999999999999999999999766544332222 478888888999999999999999999986542 


Q ss_pred             hHHHHHhc---CChHHHHHhh-----------cc--C--------CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHH
Q 013228          242 QTQCIINC---GALPYLLGLL-----------IH--N--------HKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGP  297 (447)
Q Consensus       242 ~~~~~~~~---~~l~~l~~~l-----------~~--~--------~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~  297 (447)
                      ... .+..   .+++.++..+           .+  .        .+..+|..++.++..++...++   .++. .+++.
T Consensus       289 ~~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~~-~l~~~  363 (852)
T 4fdd_A          289 CKD-VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELLP-HILPL  363 (852)
T ss_dssp             HHH-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGHH-HHHHH
T ss_pred             HHH-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HHHH-HHHHH
Confidence            111 2221   3455666665           22  0        1346788999999988763222   1222 36777


Q ss_pred             HHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhc
Q 013228          298 LVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAI  377 (447)
Q Consensus       298 L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~  377 (447)
                      +...+.++++.+|..|++++++++..... ..... -.++++.+..++.++++.++..+++++.++.........     
T Consensus       364 l~~~l~~~~~~~R~aa~~alg~i~~~~~~-~~~~~-l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~-----  436 (852)
T 4fdd_A          364 LKELLFHHEWVVKESGILVLGAIAEGCMQ-GMIPY-LPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPP-----  436 (852)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHTTTTTHH-HHGGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCT-----
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHhcchH-HHHHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchH-----
Confidence            88888888999999999999999987532 22221 134688999999999999999999999999875432110     


Q ss_pred             ccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 013228          378 GDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWC  420 (447)
Q Consensus       378 ~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  420 (447)
                         ..+.     .+.++.|.+.+.++++.++..|.+.+.++.+
T Consensus       437 ---~~~~-----~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~  471 (852)
T 4fdd_A          437 ---DTYL-----KPLMTELLKRILDSNKRVQEAACSAFATLEE  471 (852)
T ss_dssp             ---TTTH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             ---HHHH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence               0011     2345667777778899999999999998875

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.75  E-value=2e-15  Score=147.87  Aligned_cols=369  Identities=15%  Similarity=0.147  Sum_probs=253.2

Q ss_pred             cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228            2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH   81 (447)
Q Consensus         2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (447)
                      ++++++++..++..+..++..++... ++.   .  .-+++.+.+-|++++ +.+|..|+.+|+++..  ++....    
T Consensus        55 i~l~~s~~~~~Krl~yl~l~~~~~~~-~e~---~--~l~~n~l~kdL~~~n-~~ir~~AL~~L~~i~~--~~~~~~----  121 (591)
T 2vgl_B           55 VNCMQTDNLELKKLVYLYLMNYAKSQ-PDM---A--IMAVNSFVKDCEDPN-PLIRALAVRTMGCIRV--DKITEY----  121 (591)
T ss_dssp             HHTTSSSCHHHHHHHHHHHHHHHHHS-HHH---H--HTTHHHHGGGSSSSS-HHHHHHHHHHHHTCCS--GGGHHH----
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHcccC-chH---H--HHHHHHHHHHcCCCC-HHHHHHHHHHHHcCCh--HHHHHH----
Confidence            45678888888888888887776542 111   1  125678888888888 8999999999998863  444433    


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCC-C
Q 013228           82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKP-I  160 (447)
Q Consensus        82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~  160 (447)
                       +++.+..++.++++.+|..|++++.+++...+..   +...+.++.+..+| .++++.++..|+++|..++...+.. .
T Consensus       122 -l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~~~~~~~  196 (591)
T 2vgl_B          122 -LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLI-ADSNPMVVANAVAALSEISESHPNSNL  196 (591)
T ss_dssp             -HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTSCCSCCS
T ss_pred             -HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhhCCCccc
Confidence             3577889999999999999999999998755542   22234567788888 7889999999999999999876543 2


Q ss_pred             hhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcC--
Q 013228          161 FDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG--  238 (447)
Q Consensus       161 ~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~--  238 (447)
                      .......++.++..+.+.++-.+...+.++..+...++...     ..+++.+..++++.++.++..|++++..+...  
T Consensus       197 ~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~  271 (591)
T 2vgl_B          197 LDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSAVVLSAVKVLMKFLELLP  271 (591)
T ss_dssp             CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCC
T ss_pred             hhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccC
Confidence            33445667788888888888889999999988885544322     24678888899999999999999999998742  


Q ss_pred             -ChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHH------------------HHHH----HH---Hc
Q 013228          239 -DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSE------------------HIQA----VI---DA  292 (447)
Q Consensus       239 -~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~------------------~~~~----l~---~~  292 (447)
                       +++....+. ..+.+.|+.++ ++ ++.+|..|+.+++.++...++                  .+..    +.   +.
T Consensus       272 ~~~~~~~~~~-~~~~~~L~~L~-~~-d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~  348 (591)
T 2vgl_B          272 KDSDYYNMLL-KKLAPPLVTLL-SG-EPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQ  348 (591)
T ss_dssp             BTTBSHHHHH-HHTHHHHHHHT-TS-CHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCS
T ss_pred             CCHHHHHHHH-HHHHHHHHHHh-cC-CccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCCh
Confidence             233333222 24556666555 35 777888888887777642111                  0111    11   11


Q ss_pred             ----CChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhh
Q 013228          293 ----GLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGE  368 (447)
Q Consensus       293 ----~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~  368 (447)
                          .+++.|..++.+.+.++|..++++++.++... +.....     +++.|++++.+....++..++.++..++...+
T Consensus       349 ~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~-~~~~~~-----~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p  422 (591)
T 2vgl_B          349 ANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKV-EQSAER-----CVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYP  422 (591)
T ss_dssp             STHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTC-HHHHHH-----HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSC
T ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-hhHHHH-----HHHHHHHHHcccchHHHHHHHHHHHHHHHHCc
Confidence                14555666666778889999999999988764 322222     57888888888888888888888888876543


Q ss_pred             hhhhhhhhcccccHHHHHHHHhchHHHHHHHh-cCCCHHHHHHHHHHHHHhcC
Q 013228          369 AEKNMDIAIGDVNQYAQLVEEAEGLEKIENLR-SHDNDEIHEKSVKILETYWC  420 (447)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~-~~~~~~v~~~a~~~l~~~~~  420 (447)
                      ..+                  ..++..|.+.. ....++++..+.|++.+|.+
T Consensus       423 ~~~------------------~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~  457 (591)
T 2vgl_B          423 NKY------------------ESIIATLCENLDSLDEPDARAAMIWIVGEYAE  457 (591)
T ss_dssp             SSC------------------CTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCT
T ss_pred             chH------------------HHHHHHHHHHHHhccCHHHHHHHHHHHHcccc
Confidence            321                  12223332322 23456666666666666643

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.75  E-value=1e-14  Score=137.41  Aligned_cols=407  Identities=14%  Similarity=0.135  Sum_probs=283.5

Q ss_pred             CCHHHHHHHHHHHHHHHccCCCC----------------chhhh-hccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC
Q 013228            8 DDNNMQLEATTHIRKLLSNARSA----------------PTEEV-IPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSG   70 (447)
Q Consensus         8 ~~~~~~~~a~~~l~~l~~~~~~~----------------~~~~~-~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~   70 (447)
                      +|.++...++..|.++.+....+                ..+.+ .+.+.++.|+.+|++.+ ..+|..++.+|..++..
T Consensus        74 ~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d-f~vR~~alqlL~~L~~~  152 (651)
T 3grl_A           74 SDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD-FHVRWPGVKLLTSLLKQ  152 (651)
T ss_dssp             TCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC-HHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc-HHHHHHHHHHHHHHHhc
Confidence            57788888999998887754221                11233 35678999999999999 89999999999999987


Q ss_pred             Chh-hHHHHHhC-CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcccc---chhHHHHH
Q 013228           71 TSE-DTKVVIDH-GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHA---KLSMLRIA  145 (447)
Q Consensus        71 ~~~-~~~~~~~~-~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~---~~~~~~~a  145 (447)
                      .++ .++.+... ++++.|+.+|.++.+.+|..++..|.+|+.+++..++.+.-.|+++.++.++....   ...+...+
T Consensus       153 r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DC  232 (651)
T 3grl_A          153 LGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDC  232 (651)
T ss_dssp             SHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHH
T ss_pred             CcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHH
Confidence            777 77777755 99999999999999999999999999999999999999998999999999995332   23678889


Q ss_pred             HHHHHHhcCCCC-CCChhhHhhhHHHHHHhhccCCh------hHHHH---HHHHHHHhccCCc------HHHHHHHHhCc
Q 013228          146 TWTLSNFCAGKP-KPIFDQVRPALPALAQLVHSNDK------EVMTD---ACRALFYLSEGTN------DEIQAVIEAGV  209 (447)
Q Consensus       146 ~~~L~~l~~~~~-~~~~~~~~~~l~~l~~ll~~~~~------~v~~~---al~~l~~l~~~~~------~~~~~~~~~~~  209 (447)
                      +.++.+|.+..+ +.......+++|.|..++..+++      .....   ++.++.-+...+.      .....+.+.|+
T Consensus       233 L~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~  312 (651)
T 3grl_A          233 LILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGL  312 (651)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTH
T ss_pred             HHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCC
Confidence            999999999873 33333447889999999875432      12333   5666666664422      23456888999


Q ss_pred             HHHHHHhcCCC--CchhHhHHHHHHHHhhcCChhhHHHHHhcC---------ChHHHHHhhccCCchhHHHHHHHHHHHH
Q 013228          210 CPRLVELLGHP--SPSVLTRALQTVVNIAAGDDFQTQCIINCG---------ALPYLLGLLIHNHKKSIKTDACWTISNI  278 (447)
Q Consensus       210 ~~~L~~lL~~~--~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~---------~l~~l~~~l~~~~~~~v~~~a~~~l~nl  278 (447)
                      ++.+++++...  ...++..|+.+++.+.++++.....+.+..         ++..++.++.+.+...+|..|+.++..+
T Consensus       313 l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay  392 (651)
T 3grl_A          313 LQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCF  392 (651)
T ss_dssp             HHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence            99999998765  567899999999999999988777776532         2333444565554789999999999999


Q ss_pred             hcCCHHHHHHHHHc----------CCh---HHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHH--------c--
Q 013228          279 TAGNSEHIQAVIDA----------GLI---GPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVR--------E--  335 (447)
Q Consensus       279 ~~~~~~~~~~l~~~----------~~~---~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~--------~--  335 (447)
                      ..++++....+...          +.+   ..+..-+-+.|+--.-.|+.++..+... +++....+.+        .  
T Consensus       393 ~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~-n~~~K~~~l~v~l~~~~ge~~  471 (651)
T 3grl_A          393 LYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQE-NATQKEQLLRVQLATSIGNPP  471 (651)
T ss_dssp             HTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTT-CHHHHHHHTTCBCCCCTTCCC
T ss_pred             HhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcC-CHHHHHHHHhCcccccCCCCc
Confidence            98887655555532          011   1234444455554334467777788775 5555444433        1  


Q ss_pred             -CChHHHHhhccC-CCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcC--C--CHHHHH
Q 013228          336 -GCIKPLCDLLLC-ADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSH--D--NDEIHE  409 (447)
Q Consensus       336 -~~l~~L~~ll~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~--~--~~~v~~  409 (447)
                       -.+..+...|.. .++.+...-+..|..-+..+..            .....+.+...++.|.....+  +  +.-|+.
T Consensus       472 vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~------------AV~dFL~~~s~l~~L~~~i~~~~~~~~~lvqG  539 (651)
T 3grl_A          472 VSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPI------------AVTHFLHNSANVPFLTGQIAENLGEEEQLVQG  539 (651)
T ss_dssp             CBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHH------------HHHHHHHSTTHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             ccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChH------------HHHHHHcCCchHHHHHHHHHhccCcchHHHHH
Confidence             114444555543 3455444444444443333322            245566655568888876533  2  234788


Q ss_pred             HHHHHHHHhcCCCCCCCCC
Q 013228          410 KSVKILETYWCGRVAGPQP  428 (447)
Q Consensus       410 ~a~~~l~~~~~~~~~~~~~  428 (447)
                      .+.-+|.-++....++..|
T Consensus       540 L~a~LLGi~yef~~~~~~~  558 (651)
T 3grl_A          540 LCALLLGISIYFNDNSLET  558 (651)
T ss_dssp             HHHHHHHHHHHTCCSCCGG
T ss_pred             HHHHHHHHHhhccCCCcCc
Confidence            8999998888766555433

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.73  E-value=6.2e-16  Score=137.09  Aligned_cols=258  Identities=13%  Similarity=0.094  Sum_probs=201.8

Q ss_pred             hccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChh
Q 013228           36 IPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSAR  115 (447)
Q Consensus        36 ~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~  115 (447)
                      ...+.++.|++.|.+++ +.+|..|+++|+++..  +         +.++.|+.++.++++.+|..++++|+.+......
T Consensus        20 ~~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~   87 (280)
T 1oyz_A           20 CKKLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC   87 (280)
T ss_dssp             HHTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT
T ss_pred             HHHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC--c---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence            34568999999999988 8999999999999873  2         3578899999999999999999999998754332


Q ss_pred             HHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 013228          116 CRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSE  195 (447)
Q Consensus       116 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~  195 (447)
                      ...      .++.+...+..+++..++..++++|..+....+    .....+++.+..+++++++.++..++++|+++..
T Consensus        88 ~~~------l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~  157 (280)
T 1oyz_A           88 EDN------VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND  157 (280)
T ss_dssp             HHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred             chH------HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence            111      123333333367889999999999999974321    1235678999999999999999999999998753


Q ss_pred             CCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHH
Q 013228          196 GTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTI  275 (447)
Q Consensus       196 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l  275 (447)
                                 .+.++.|+.++.++++.+|..++++|+.+....+         ..++.+..++.++ ++.+|..++++|
T Consensus       158 -----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~aL  216 (280)
T 1oyz_A          158 -----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIGL  216 (280)
T ss_dssp             ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHHH
T ss_pred             -----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence                       2478999999999999999999999999854333         2456788899888 999999999999


Q ss_pred             HHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccC-CCHHHHH
Q 013228          276 SNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC-ADPEIVT  354 (447)
Q Consensus       276 ~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~~~~  354 (447)
                      +++..           ...++.|+..+.++  +++..|+++|+.+...            ..++.|..++.+ .+++++.
T Consensus       217 ~~~~~-----------~~~~~~L~~~l~d~--~vr~~a~~aL~~i~~~------------~~~~~L~~~l~~~~~~~~~~  271 (280)
T 1oyz_A          217 SYRKD-----------KRVLSVLCDELKKN--TVYDDIIEAAGELGDK------------TLLPVLDTMLYKFDDNEIIT  271 (280)
T ss_dssp             HHTTC-----------GGGHHHHHHHHTSS--SCCHHHHHHHHHHCCG------------GGHHHHHHHHTTSSCCHHHH
T ss_pred             HHhCC-----------HhhHHHHHHHhcCc--cHHHHHHHHHHhcCch------------hhhHHHHHHHhcCCCcHHHH
Confidence            99852           23788888888764  4899999999998541            367888888865 5667777


Q ss_pred             HHHHHHH
Q 013228          355 VFLKGLE  361 (447)
Q Consensus       355 ~a~~~l~  361 (447)
                      .++..+.
T Consensus       272 ~~~~~l~  278 (280)
T 1oyz_A          272 SAIDKLK  278 (280)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhh
Confidence            7776654

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.73  E-value=2.1e-15  Score=141.96  Aligned_cols=324  Identities=13%  Similarity=0.134  Sum_probs=249.1

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCChh--
Q 013228           40 VVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLAS--PSDDIREQAVCALGNVAADSAR--  115 (447)
Q Consensus        40 ~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~i~~~a~~~L~~l~~~~~~--  115 (447)
                      .++.|+.=+++..-.+-|+.|+..|..++..   ++..+. .++++.|+..|+.  .|.++.+.++.+|.++....+.  
T Consensus        22 tI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~Vg-~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~   97 (651)
T 3grl_A           22 TIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLEVG-IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEE   97 (651)
T ss_dssp             HHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTHHH-HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC----
T ss_pred             HHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHHhh-hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCccc
Confidence            5788888777765578899999999999874   333333 4679999999976  5889999999999887643321  


Q ss_pred             ---------------HHHH-HHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhH---hhhHHHHHHhhc
Q 013228          116 ---------------CRDL-VLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQV---RPALPALAQLVH  176 (447)
Q Consensus       116 ---------------~~~~-~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~---~~~l~~l~~ll~  176 (447)
                                     +.+. +.+.+.++.|+.+| ...+-.++.+++.+|..++...+......+   .++++.|+.+|.
T Consensus        98 ~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL-~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~  176 (651)
T 3grl_A           98 VEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLL-EEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA  176 (651)
T ss_dssp             ----------CHHHHHHHHHHHSTHHHHHHHHHT-TCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGG
T ss_pred             ccccccccchHHHHHHHHHHHcCCccHHHHHHHh-cCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHh
Confidence                           1122 34556799999999 778899999999999999988754333322   589999999999


Q ss_pred             cCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCc----hhHhHHHHHHHHhhcCChhhHHHHHhcCCh
Q 013228          177 SNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSP----SVLTRALQTVVNIAAGDDFQTQCIINCGAL  252 (447)
Q Consensus       177 ~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~----~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l  252 (447)
                      ++.+.+|..++..|.+++.++.+..+.+.-.|+++.|+.++.....    .+...++.++.+|.++++.....+.+.+++
T Consensus       177 d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i  256 (651)
T 3grl_A          177 DSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYI  256 (651)
T ss_dssp             CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCG
T ss_pred             CchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCH
Confidence            9999999999999999999888766656666999999999976443    678889999999999999888999999999


Q ss_pred             HHHHHhhccCCch-----hHHHH---HHHHHHHHhcC------CHHHHHHHHHcCChHHHHHHHhcC--chhHHHHHHHH
Q 013228          253 PYLLGLLIHNHKK-----SIKTD---ACWTISNITAG------NSEHIQAVIDAGLIGPLVNLLQNA--EFDIKNWAARA  316 (447)
Q Consensus       253 ~~l~~~l~~~~~~-----~v~~~---a~~~l~nl~~~------~~~~~~~l~~~~~~~~L~~~l~~~--~~~v~~~a~~a  316 (447)
                      +.|..++..+.+.     ....+   +..++.-++..      ++.+...+.+.|+++.+++++...  ...++..|+.+
T Consensus       257 ~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~t  336 (651)
T 3grl_A          257 QRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINT  336 (651)
T ss_dssp             GGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHH
T ss_pred             HHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHH
Confidence            9999999755211     12222   44555555553      234566788999999999998865  57899999999


Q ss_pred             HHHhcCCCCHHHHHHHHHcC---------ChHHHHhhccCC-CHHHHHHHHHHHHHHHHhhhh
Q 013228          317 ISNATFGGTHEQIKYLVREG---------CIKPLCDLLLCA-DPEIVTVFLKGLEKILKVGEA  369 (447)
Q Consensus       317 L~~l~~~~~~~~~~~l~~~~---------~l~~L~~ll~~~-~~~~~~~a~~~l~~l~~~~~~  369 (447)
                      ++.+... ++.....+....         ++..|..++.+. ..+++.+++.++..++...+.
T Consensus       337 la~~irg-N~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~  398 (651)
T 3grl_A          337 VSEVIRG-CQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQK  398 (651)
T ss_dssp             HHHHHTT-CHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhC-CHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHH
Confidence            9998886 566666666533         233455556554 468999999999999976654

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.70  E-value=6.1e-16  Score=151.45  Aligned_cols=325  Identities=14%  Similarity=0.114  Sum_probs=204.8

Q ss_pred             cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228            2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH   81 (447)
Q Consensus         2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (447)
                      .+++.++++.+|..|+.++.++.... ++.   +.+.+.++.+.++|.+++ +.|+..|+.+|..++..+++........
T Consensus       127 ~~~L~d~~~~VRk~A~~al~~i~~~~-p~~---~~~~~~~~~l~~lL~d~d-~~V~~~A~~aL~~i~~~~~~~~~~~l~~  201 (591)
T 2vgl_B          127 RKCLKDEDPYVRKTAAVCVAKLHDIN-AQM---VEDQGFLDSLRDLIADSN-PMVVANAVAALSEISESHPNSNLLDLNP  201 (591)
T ss_dssp             HHHSSCSCHHHHHHHHHHHHHHHHSS-CCC---HHHHHHHHHHHHTTSCSC-HHHHHHHHHHHHHHTTSCCSCCSCCCHH
T ss_pred             HHHcCCCChHHHHHHHHHHHHHHhhC-hhh---cccccHHHHHHHHhCCCC-hhHHHHHHHHHHHHHhhCCCccchhccH
Confidence            35678899999999999999998864 332   223468899999999888 9999999999999998665331000111


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCC---CC
Q 013228           82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK---PK  158 (447)
Q Consensus        82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~---~~  158 (447)
                      +.+..|+..+.+.++-.+...+.+++.++..++....     ..++.+...+ ++.+..++..|++++.++....   +.
T Consensus       202 ~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~-----~~l~~l~~~l-~~~~~~V~~ea~~~i~~l~~~~~~~~~  275 (591)
T 2vgl_B          202 QNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQ-----SICERVTPRL-SHANSAVVLSAVKVLMKFLELLPKDSD  275 (591)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHH-----HHHHHHTTCS-CSSTTHHHHHHHHHHHHSCCSCCBTTB
T ss_pred             HHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHH-cCCChHHHHHHHHHHHHHhhccCCCHH
Confidence            2356677777777888888999999998865543222     2356666666 6778899999999999997532   22


Q ss_pred             CChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcC
Q 013228          159 PIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG  238 (447)
Q Consensus       159 ~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~  238 (447)
                      ........+.+.++.++ ++++.++..++.++..+....+....     ..+..+. .+.+++..+|..++.++..++..
T Consensus       276 ~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~-----~~~~~~~-~~~~d~~~Ir~~al~~L~~l~~~  348 (591)
T 2vgl_B          276 YYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEILK-----QEIKVFF-VKYNDPIYVKLEKLDIMIRLASQ  348 (591)
T ss_dssp             SHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTT-----TCTTTTS-CCTTSCHHHHHHHHHHHHHTCCS
T ss_pred             HHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHH-----HHHHhhe-eccCChHHHHHHHHHHHHHHCCh
Confidence            22222356667777665 47899999999999988854332211     0111111 11233367777777777777643


Q ss_pred             ChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHH
Q 013228          239 DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAIS  318 (447)
Q Consensus       239 ~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~  318 (447)
                      ..  ..     .+++.|...+.+. +.++|..++++++.++...+....     ..++.|++++......++..+..++.
T Consensus       349 ~n--v~-----~iv~~L~~~l~~~-d~~~r~~~v~aI~~la~~~~~~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~  415 (591)
T 2vgl_B          349 AN--IA-----QVLAELKEYATEV-DVDFVRKAVRAIGRCAIKVEQSAE-----RCVSTLLDLIQTKVNYVVQEAIVVIR  415 (591)
T ss_dssp             ST--HH-----HHHHHHHHHTTSS-CHHHHHHHHHHHHHHHTTCHHHHH-----HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             hh--HH-----HHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhChhHHH-----HHHHHHHHHHcccchHHHHHHHHHHH
Confidence            32  22     1344566667666 777777777777777765443222     24455666666555566666665665


Q ss_pred             HhcCCCCHHHHHHHHHcCChHHHHhhccC-CCHHHHHHHHHHHHHH
Q 013228          319 NATFGGTHEQIKYLVREGCIKPLCDLLLC-ADPEIVTVFLKGLEKI  363 (447)
Q Consensus       319 ~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~~~~~a~~~l~~l  363 (447)
                      ++..... +     ....++..|.+.+++ .+++++..++|+++.+
T Consensus       416 ~ii~~~p-~-----~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey  455 (591)
T 2vgl_B          416 DIFRKYP-N-----KYESIIATLCENLDSLDEPDARAAMIWIVGEY  455 (591)
T ss_dssp             HHHHHSC-S-----SCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTT
T ss_pred             HHHHHCc-c-----hHHHHHHHHHHHHHhccCHHHHHHHHHHHHcc
Confidence            5543211 0     012344455555542 3445555555555544

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.68  E-value=1e-14  Score=129.25  Aligned_cols=257  Identities=14%  Similarity=0.105  Sum_probs=196.5

Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCC
Q 013228           79 IDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPK  158 (447)
Q Consensus        79 ~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~  158 (447)
                      ...+.++.|+..|.++++.+|..++++|+++..  +         +.++.++..+ .+++..++..++++|..+..... 
T Consensus        20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l-~d~~~~vR~~A~~aL~~l~~~~~-   86 (280)
T 1oyz_A           20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRGG--Q---------DAVRLAIEFC-SDKNYIRRDIGAFILGQIKICKK-   86 (280)
T ss_dssp             HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC--H---------HHHHHHHHHH-TCSSHHHHHHHHHHHHHSCCCTT-
T ss_pred             HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC--c---------hHHHHHHHHH-cCCCHHHHHHHHHHHHHhccccc-
Confidence            345789999999999999999999999999862  2         2477888888 77888999999999999864321 


Q ss_pred             CChhhHhhhHHHHHH-hhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhc
Q 013228          159 PIFDQVRPALPALAQ-LVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAA  237 (447)
Q Consensus       159 ~~~~~~~~~l~~l~~-ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~  237 (447)
                          ....+++.+.. +++++++.++..++++|+++....+..     ....++.|...+.++++.+|..++.+|+++..
T Consensus        87 ----~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~  157 (280)
T 1oyz_A           87 ----CEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITAFDKSTNVRRATAFAISVIND  157 (280)
T ss_dssp             ----THHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred             ----cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence                12335555553 567889999999999999987433221     12457889999999999999999999997653


Q ss_pred             CChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHH
Q 013228          238 GDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAI  317 (447)
Q Consensus       238 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL  317 (447)
                                 ...++.|+.++.++ ++.+|..++++|+.+....+.         .++.|..++.++++.+|..|+++|
T Consensus       158 -----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~~~~~---------~~~~L~~~l~d~~~~vR~~A~~aL  216 (280)
T 1oyz_A          158 -----------KATIPLLINLLKDP-NGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRIEAIIGL  216 (280)
T ss_dssp             ------------CCHHHHHHHHTCS-SHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             -----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHhhccCcHH---------HHHHHHHHhcCCCHHHHHHHHHHH
Confidence                       24789999999998 999999999999998644443         567788889999999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHH
Q 013228          318 SNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIE  397 (447)
Q Consensus       318 ~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~  397 (447)
                      +++..            ...++.|...+.+++  ++..+..+|..+-.                        ...++.|.
T Consensus       217 ~~~~~------------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~------------------------~~~~~~L~  258 (280)
T 1oyz_A          217 SYRKD------------KRVLSVLCDELKKNT--VYDDIIEAAGELGD------------------------KTLLPVLD  258 (280)
T ss_dssp             HHTTC------------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC------------------------GGGHHHHH
T ss_pred             HHhCC------------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc------------------------hhhhHHHH
Confidence            99862            236788888887754  77788888777521                        13355666


Q ss_pred             HHh-cCCCHHHHHHHHHHHH
Q 013228          398 NLR-SHDNDEIHEKSVKILE  416 (447)
Q Consensus       398 ~l~-~~~~~~v~~~a~~~l~  416 (447)
                      .++ .++++++...+...+.
T Consensus       259 ~~l~~~~~~~~~~~~~~~l~  278 (280)
T 1oyz_A          259 TMLYKFDDNEIITSAIDKLK  278 (280)
T ss_dssp             HHHTTSSCCHHHHHHHHHHT
T ss_pred             HHHhcCCCcHHHHHHHHHhh
Confidence            665 4566777777776664

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.65  E-value=1e-14  Score=143.22  Aligned_cols=355  Identities=13%  Similarity=0.091  Sum_probs=250.6

Q ss_pred             ccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCC
Q 013228            3 AGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHG   82 (447)
Q Consensus         3 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~   82 (447)
                      +-|+++++.++..|+++|.++...       .+. ..+++.+.+++.+++ +.||..|+.++.++...+++...     +
T Consensus       114 kDL~~~n~~vr~lAL~~L~~i~~~-------~~~-~~l~~~l~~~L~~~~-~~VRk~A~~al~~l~~~~p~~v~-----~  179 (618)
T 1w63_A          114 NDLNHSTQFVQGLALCTLGCMGSS-------EMC-RDLAGEVEKLLKTSN-SYLRKKAALCAVHVIRKVPELME-----M  179 (618)
T ss_dssp             HHHSCSSSHHHHHHHHHHHHHCCH-------HHH-HHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHCGGGGG-----G
T ss_pred             HhcCCCCHhHHHHHHHHHHhcCCH-------HHH-HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHChHHHH-----H
Confidence            346778888888888888887632       122 246888999999998 99999999999999886665432     6


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcc--------------ccchhHHHHHHHH
Q 013228           83 AVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNK--------------HAKLSMLRIATWT  148 (447)
Q Consensus        83 ~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~--------------~~~~~~~~~a~~~  148 (447)
                      +++.+..++.++++.++..|+.+|..++..++.....+  ...++.++..|..              ..++-.+...+.+
T Consensus       180 ~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~  257 (618)
T 1w63_A          180 FLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRL  257 (618)
T ss_dssp             GGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHH
Confidence            77888899999999999999999999997765432233  2568888887743              2366777888899


Q ss_pred             HHHhcCCCCCCChhhHhhhHHHHHHhhc------cCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCc
Q 013228          149 LSNFCAGKPKPIFDQVRPALPALAQLVH------SNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSP  222 (447)
Q Consensus       149 L~~l~~~~~~~~~~~~~~~l~~l~~ll~------~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~  222 (447)
                      +..++...+    .......+.|..++.      +.+..+...+++++..+... +.    +. ..++..|..++.++++
T Consensus       258 L~~l~~~~~----~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~-~~----l~-~~a~~~L~~~L~~~d~  327 (618)
T 1w63_A          258 LRILGRNDD----DSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE-SG----LR-VLAINILGRFLLNNDK  327 (618)
T ss_dssp             HHHHTTTCH----HHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC-HH----HH-HHHHHHHHHHHTCSST
T ss_pred             HHHhCCCCH----HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC-HH----HH-HHHHHHHHHHHhCCCC
Confidence            999886542    122334444545443      34568899999999987642 21    11 1356788888999999


Q ss_pred             hhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH
Q 013228          223 SVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLL  302 (447)
Q Consensus       223 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l  302 (447)
                      .+|..|+.+|+.++...+..    +. .....++..+.++ +..+|..|..++..++...  +...     +++.+...+
T Consensus       328 ~vr~~aL~~L~~i~~~~p~~----~~-~~~~~i~~~l~d~-d~~Ir~~alelL~~l~~~~--nv~~-----iv~eL~~~l  394 (618)
T 1w63_A          328 NIRYVALTSLLKTVQTDHNA----VQ-RHRSTIVDCLKDL-DVSIKRRAMELSFALVNGN--NIRG-----MMKELLYFL  394 (618)
T ss_dssp             TTHHHHHHHHHHHHHHHHHH----HG-GGHHHHHHGGGSS-CHHHHHHHHHHHHHHCCSS--STHH-----HHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhhCHHH----HH-HHHHHHHHHccCC-ChhHHHHHHHHHHHHcccc--cHHH-----HHHHHHHHH
Confidence            99999999999998755432    22 3566788889988 9999999999999998742  1222     356788888


Q ss_pred             hcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccH
Q 013228          303 QNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQ  382 (447)
Q Consensus       303 ~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~  382 (447)
                      .+.+.+++..++.+|+.++....+.. ..     .++.|++++......+...++..+..++...+..+           
T Consensus       395 ~~~d~e~r~~~v~~I~~la~k~~~~~-~~-----~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~-----------  457 (618)
T 1w63_A          395 DSCEPEFKADCASGIFLAAEKYAPSK-RW-----HIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMH-----------  457 (618)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHSSCCCH-HH-----HHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTH-----------
T ss_pred             HhCCHHHHHHHHHHHHHHHHHhCccH-HH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHH-----------
Confidence            88899999999999999997532222 22     36777788877665566666667777776544321           


Q ss_pred             HHHHHHHhchHHHHHHHhc--CCCHHHHHHHHHHHHHhcC
Q 013228          383 YAQLVEEAEGLEKIENLRS--HDNDEIHEKSVKILETYWC  420 (447)
Q Consensus       383 ~~~~i~~~~~~~~l~~l~~--~~~~~v~~~a~~~l~~~~~  420 (447)
                        .     .++..|..+..  ...+.+...+.|++.+|.+
T Consensus       458 --~-----~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~  490 (618)
T 1w63_A          458 --A-----YTVQRLYKAILGDYSQQPLVQVAAWCIGEYGD  490 (618)
T ss_dssp             --H-----HHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHH
T ss_pred             --H-----HHHHHHHHHHhcccccHHHHHHHHHHHhhhHH
Confidence              1     11222333322  1334455678999999864

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.64  E-value=4.3e-14  Score=145.54  Aligned_cols=343  Identities=15%  Similarity=0.200  Sum_probs=234.3

Q ss_pred             CHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh-hhHHHHHhCCChHHH
Q 013228            9 DNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTS-EDTKVVIDHGAVPIF   87 (447)
Q Consensus         9 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L   87 (447)
                      ++.++..|..+|..++...+.    .++ ..+++.+.+.+++++ +.+|+.|+++++.++.+.. +.....+. .+++.+
T Consensus       344 ~~~~r~~a~~~L~~l~~~~~~----~~~-~~l~~~l~~~l~~~~-~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l  416 (861)
T 2bpt_A          344 DWNVSMSAGACLQLFAQNCGN----HIL-EPVLEFVEQNITADN-WRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSI  416 (861)
T ss_dssp             CCHHHHHHHHHHHHHHHHHGG----GGH-HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHccH----hHH-HHHHHHHHHHcCCCC-hhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHH
Confidence            457888888899888765311    111 235677777788888 8999999999999997542 32222332 478889


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhhcCChhH---HHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCC----CCC
Q 013228           88 VKLLASPSDDIREQAVCALGNVAADSARC---RDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKP----KPI  160 (447)
Q Consensus        88 ~~ll~~~~~~i~~~a~~~L~~l~~~~~~~---~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~----~~~  160 (447)
                      +..+.++++.+|..++++++.++......   ...  -...++.++..+ .+. +.++..+++++.+++....    ...
T Consensus       417 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~l~~l~~~l-~~~-~~v~~~a~~al~~l~~~~~~~~~~~l  492 (861)
T 2bpt_A          417 LNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH--LPGVVQACLIGL-QDH-PKVATNCSWTIINLVEQLAEATPSPI  492 (861)
T ss_dssp             HHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT--HHHHHHHHHHHH-TSC-HHHHHHHHHHHHHHHHHHSSSSSCGG
T ss_pred             HHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH--HHHHHHHHHHHh-ccC-hHHHHHHHHHHHHHHHhcccccchhh
Confidence            99999999999999999999998431110   000  112366777777 333 7899999999999886532    222


Q ss_pred             hhhHhhhHHHHHHhhccCC--hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC---------------CCch
Q 013228          161 FDQVRPALPALAQLVHSND--KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH---------------PSPS  223 (447)
Q Consensus       161 ~~~~~~~l~~l~~ll~~~~--~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~---------------~~~~  223 (447)
                      ......+++.++..+.+.+  +.++..++.+++.++............ .+++.++..+.+               ....
T Consensus       493 ~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~  571 (861)
T 2bpt_A          493 YNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQE  571 (861)
T ss_dssp             GGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHH
Confidence            2345778888889988544  789999999999998654433222222 355555555532               1345


Q ss_pred             hHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCch-hHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH
Q 013228          224 VLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKK-SIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLL  302 (447)
Q Consensus       224 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~-~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l  302 (447)
                      ++..++.++++++...+....... ..+++.+...+.+. +. .++..++++++.++..........+.. ++|.+...+
T Consensus       572 ~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~-i~~~l~~~l  648 (861)
T 2bpt_A          572 LQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRLLEKK-DSAFIEDDVFYAISALAASLGKGFEKYLET-FSPYLLKAL  648 (861)
T ss_dssp             HHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHHHHST-TGGGTHHHHHHHHHHHHHHHGGGGHHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHccC-CCCcHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHh
Confidence            677899999998865443211111 14667788888777 56 899999999999886322222233333 788899999


Q ss_pred             hcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCC--HHHHHHHHHHHHHHHHhhh
Q 013228          303 QNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCAD--PEIVTVFLKGLEKILKVGE  368 (447)
Q Consensus       303 ~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~--~~~~~~a~~~l~~l~~~~~  368 (447)
                      ..+++.++..++.++..++.........++  ..+++.+...+.+.+  ++++..++.++..++....
T Consensus       649 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~  714 (861)
T 2bpt_A          649 NQVDSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIG  714 (861)
T ss_dssp             HCTTSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHG
T ss_pred             ccccHHHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhh
Confidence            888889999999999988865432222222  235777778887754  7899999999999987654

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.62  E-value=8.5e-15  Score=139.65  Aligned_cols=385  Identities=12%  Similarity=0.079  Sum_probs=262.2

Q ss_pred             ccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHcCCChhhHHH----
Q 013228            3 AGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMRED-YPQLQFEAAWALKNIVSGTSEDTKV----   77 (447)
Q Consensus         3 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~----   77 (447)
                      ..+.++|..+|..|-..|.++...+         ..+.+..|..++.+++ ++.+|..|+..|.++..........    
T Consensus         8 ~~~~s~d~~~r~~Ae~~L~~~~~~~---------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~   78 (462)
T 1ibr_B            8 EKTVSPDRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ   78 (462)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHhhC---------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHh
Confidence            4567889999999999998865421         1235677788887652 4899999999999987643111100    


Q ss_pred             -H------HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcccc--chhHHHHHHHH
Q 013228           78 -V------IDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHA--KLSMLRIATWT  148 (447)
Q Consensus        78 -~------~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~--~~~~~~~a~~~  148 (447)
                       .      ....+-..++..+.++++.+ ..++.+++.++.......   .-.+.++.++..+ .+.  +..++..++.+
T Consensus        79 ~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~---~w~~ll~~L~~~l-~~~~~~~~~r~~al~~  153 (462)
T 1ibr_B           79 RWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN---QWPELIPQLVANV-TNPNSTEHMKESTLEA  153 (462)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT---CCTTHHHHHHHHH-HCTTCCHHHHHHHHHH
T ss_pred             hhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc---ccHHHHHHHHHHh-ccCCCCHHHHHHHHHH
Confidence             0      11123355777788777778 889999999874321100   0134678888888 445  78899999999


Q ss_pred             HHHhcCCC-CCCChhhHhhhHHHHHHhhccC--ChhHHHHHHHHHHHhccCCcHHHH-HHHHhCcHHHHHHhcCCCCchh
Q 013228          149 LSNFCAGK-PKPIFDQVRPALPALAQLVHSN--DKEVMTDACRALFYLSEGTNDEIQ-AVIEAGVCPRLVELLGHPSPSV  224 (447)
Q Consensus       149 L~~l~~~~-~~~~~~~~~~~l~~l~~ll~~~--~~~v~~~al~~l~~l~~~~~~~~~-~~~~~~~~~~L~~lL~~~~~~v  224 (447)
                      +..++... +.........+++.+...+.++  ++.++..+++++.++......... .....-+++.+...+.++++.+
T Consensus       154 l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v  233 (462)
T 1ibr_B          154 IGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRV  233 (462)
T ss_dssp             HHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHH
T ss_pred             HHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHH
Confidence            99998753 2222334467888899999887  789999999999987643322111 0111124667777788889999


Q ss_pred             HhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHH--------------------
Q 013228          225 LTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSE--------------------  284 (447)
Q Consensus       225 ~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~--------------------  284 (447)
                      +..++.++..++...+......+..++++.++..+.+. +..++..++..+..++.....                    
T Consensus       234 r~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (462)
T 1ibr_B          234 RVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSK  312 (462)
T ss_dssp             HHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhH
Confidence            99999999999865543322222225677777788777 899999999999888753111                    


Q ss_pred             -HHHHHHHcCChHHHHHHHhc-------CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHH
Q 013228          285 -HIQAVIDAGLIGPLVNLLQN-------AEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVF  356 (447)
Q Consensus       285 -~~~~l~~~~~~~~L~~~l~~-------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a  356 (447)
                       ..+... ..++|.++..+..       +++.+|..|..+|..++.........     .+++.+...+.+.++.++..+
T Consensus       313 ~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~-----~~~~~l~~~l~~~~~~~r~aa  386 (462)
T 1ibr_B          313 FYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP-----HVLPFIKEHIKNPDWRYRDAA  386 (462)
T ss_dssp             CHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHH-----HHHHHHHHHTTCSSHHHHHHH
T ss_pred             HHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhcCCChHHHHHH
Confidence             011111 2256666666643       24578999999999987643322222     357788888999999999999


Q ss_pred             HHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 013228          357 LKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWCG  421 (447)
Q Consensus       357 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  421 (447)
                      +.++..+........           +...+  ...++.+...+.++++.|+..|.+.+.++...
T Consensus       387 l~~l~~l~~~~~~~~-----------~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~  438 (462)
T 1ibr_B          387 VMAFGCILEGPEPSQ-----------LKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  438 (462)
T ss_dssp             HHHHHHTSSSSCTTT-----------TCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCcHHH-----------HHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            999999986432110           01111  45678888899999999999999999998763

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.62  E-value=2.4e-14  Score=147.64  Aligned_cols=267  Identities=19%  Similarity=0.212  Sum_probs=188.7

Q ss_pred             cccCC--CHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228            4 GVWSD--DNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH   81 (447)
Q Consensus         4 ~l~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (447)
                      .+.++  ++.++..|+.++..++..-............+++.+...+.+++ ++++..++++|..++...++.....+..
T Consensus       180 ~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~-~~vr~~a~~~l~~l~~~~~~~~~~~~~~  258 (876)
T 1qgr_A          180 GMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQYMETYMGP  258 (876)
T ss_dssp             HHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSGGGCHHHHTT
T ss_pred             hhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            45555  68899999999999875421100011111236777778877777 8999999999999987555554444545


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChh----------------------HHHHHHhcCCHHHHHHHhcc----
Q 013228           82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSAR----------------------CRDLVLSEEALIPLLTQLNK----  135 (447)
Q Consensus        82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~----------------------~~~~~~~~~~l~~l~~~l~~----  135 (447)
                      .+++.++..+.+.++.++..++.++..++.....                      .+..+  ...++.++..+..    
T Consensus       259 ~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ll~~ll~~l~~~~~d  336 (876)
T 1qgr_A          259 ALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL--QYLVPILTQTLTKQDEN  336 (876)
T ss_dssp             THHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH--HHHHHHHHHHTTCCCSS
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH--HHHhHHHHHHhhccccc
Confidence            7788888888888999999999999998743210                      00011  1235566666642    


Q ss_pred             --ccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCc-HHHHHHHHhCcHHH
Q 013228          136 --HAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTN-DEIQAVIEAGVCPR  212 (447)
Q Consensus       136 --~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~-~~~~~~~~~~~~~~  212 (447)
                        +.+..++..+..++..++...+   ......+++.+...+.++++.++..++++++.++.... +...... ..+++.
T Consensus       337 ~~~~~~~~r~~a~~~l~~l~~~~~---~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~  412 (876)
T 1qgr_A          337 DDDDDWNPCKAAGVCLMLLATCCE---DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPT  412 (876)
T ss_dssp             CCTTCCCHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHH
T ss_pred             ccccccHHHHHHHHHHHHHHHHCc---HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHH
Confidence              2346788889999988886543   13356788888888899999999999999999997654 3333222 357899


Q ss_pred             HHHhcCCCCchhHhHHHHHHHHhhcCChhhH--HHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc
Q 013228          213 LVELLGHPSPSVLTRALQTVVNIAAGDDFQT--QCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA  280 (447)
Q Consensus       213 L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~  280 (447)
                      ++..+.++++.+|..|++++++++...+...  ...+ ..+++.++..+.+  ++.++..+++++++++.
T Consensus       413 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l-~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~  479 (876)
T 1qgr_A          413 LIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL-APLLQCLIEGLSA--EPRVASNVCWAFSSLAE  479 (876)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH-HHHHHHHHHHTTS--CHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH-HHHHHHHHHHHcC--CHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999987543210  0011 1356677777765  37889999999999875

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.61  E-value=1.1e-14  Score=149.82  Aligned_cols=396  Identities=11%  Similarity=0.116  Sum_probs=259.1

Q ss_pred             ccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-HHHHhC
Q 013228            3 AGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDT-KVVIDH   81 (447)
Q Consensus         3 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~   81 (447)
                      +.++++++..+..|++++..++.+.......... ..+++.+++.+.+++ +.+|..++++++.++....... ..-.-.
T Consensus       376 ~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~~~~  453 (861)
T 2bpt_A          376 QNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESIDPQQHLP  453 (861)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGGSCTTTTHH
T ss_pred             HHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhhhhcCCHHHHH
Confidence            3467888999999999999998653112222222 247888999999888 9999999999999886211100 000011


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-----hhHHHHHHhcCCHHHHHHHhcc-ccchhHHHHHHHHHHHhcCC
Q 013228           82 GAVPIFVKLLASPSDDIREQAVCALGNVAADS-----ARCRDLVLSEEALIPLLTQLNK-HAKLSMLRIATWTLSNFCAG  155 (447)
Q Consensus        82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~-----~~~~~~~~~~~~l~~l~~~l~~-~~~~~~~~~a~~~L~~l~~~  155 (447)
                      .+++.++..+.++ +.++..+++++.+++...     ......+  ...++.++..+.. +.+..++..++.++..++..
T Consensus       454 ~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~  530 (861)
T 2bpt_A          454 GVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALTTMVEY  530 (861)
T ss_dssp             HHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHH
Confidence            3567788888765 999999999999987431     1111111  1235667777743 33478899999999999877


Q ss_pred             CCCCChhhHhhhHHHHHHhhccC---------------ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC
Q 013228          156 KPKPIFDQVRPALPALAQLVHSN---------------DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHP  220 (447)
Q Consensus       156 ~~~~~~~~~~~~l~~l~~ll~~~---------------~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~  220 (447)
                      .+.........++|.++..+...               ...++..++.++.+++........... ..+++.+...+.+.
T Consensus       531 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~  609 (861)
T 2bpt_A          531 ATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRLLEKK  609 (861)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHHHHST
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHccC
Confidence            65444444567777777766531               345778889999888854433211111 24677788888777


Q ss_pred             Cc-hhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHH
Q 013228          221 SP-SVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLV  299 (447)
Q Consensus       221 ~~-~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~  299 (447)
                      +. .++..++.+++.++..........+. .+++.+...+.++ +..++..++.+++.++....+...... ..+++.++
T Consensus       610 ~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~l~~~l~  686 (861)
T 2bpt_A          610 DSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYS-DAMMNVLA  686 (861)
T ss_dssp             TGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHH-HHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhchhccchH-HHHHHHHH
Confidence            66 89999999999998644333222222 4778888888776 888999999999998874333333333 23778888


Q ss_pred             HHHhcCc--hhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCC-----------HHHHHHHHHHHHHHHHh
Q 013228          300 NLLQNAE--FDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCAD-----------PEIVTVFLKGLEKILKV  366 (447)
Q Consensus       300 ~~l~~~~--~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~-----------~~~~~~a~~~l~~l~~~  366 (447)
                      ..+.+++  .++|..++.+++.++.........++-  .+++.+...+....           ..++..+++++..++..
T Consensus       687 ~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~--~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~  764 (861)
T 2bpt_A          687 QMISNPNARRELKPAVLSVFGDIASNIGADFIPYLN--DIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAG  764 (861)
T ss_dssp             HHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888654  889999999999998753333333332  25777777776431           35778888888888864


Q ss_pred             hhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCC----CHHHHHHHHHHHHHhcC
Q 013228          367 GEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHD----NDEIHEKSVKILETYWC  420 (447)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~----~~~v~~~a~~~l~~~~~  420 (447)
                      .....         ..+...+  ...++.+.....+.    +.+++..|..++..+..
T Consensus       765 l~~~~---------~~~~~~~--~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~  811 (861)
T 2bpt_A          765 LHDKP---------EALFPYV--GTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAA  811 (861)
T ss_dssp             TTTCH---------HHHGGGH--HHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHH
T ss_pred             HccCH---------HHHHHHH--HHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHH
Confidence            32110         0011111  12234444444442    78899999999988765

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.58  E-value=1.4e-13  Score=135.21  Aligned_cols=321  Identities=13%  Similarity=0.117  Sum_probs=230.5

Q ss_pred             ccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCC
Q 013228            3 AGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHG   82 (447)
Q Consensus         3 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~   82 (447)
                      +.+.+.++.++..|+.++.++.... ++..     .+.++.+..++.+++ +.|+..|+.+|..++..+++....+.  .
T Consensus       149 ~~L~~~~~~VRk~A~~al~~l~~~~-p~~v-----~~~~~~l~~lL~D~d-~~V~~~Al~~L~~i~~~~~~~~~~~~--~  219 (618)
T 1w63_A          149 KLLKTSNSYLRKKAALCAVHVIRKV-PELM-----EMFLPATKNLLNEKN-HGVLHTSVVLLTEMCERSPDMLAHFR--K  219 (618)
T ss_dssp             HHHHSCCHHHHHHHHHHHHHHHHHC-GGGG-----GGGGGGTTTSTTCCC-HHHHHHHHHHHHHHCCSHHHHHHHHH--T
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHC-hHHH-----HHHHHHHHHHhCCCC-HhHHHHHHHHHHHHHHhChHHHHHHH--H
Confidence            4678899999999999999999864 3222     257888889998888 99999999999999986555433332  5


Q ss_pred             ChHHHHHhhCC---------------CCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhc-----cccchhHH
Q 013228           83 AVPIFVKLLAS---------------PSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLN-----KHAKLSML  142 (447)
Q Consensus        83 ~i~~L~~ll~~---------------~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~-----~~~~~~~~  142 (447)
                      .++.++..|.+               .++-.+..++.+|+.++..++...+     ...+.+..++.     ++.+..+.
T Consensus       220 ~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~~~~~~aV~  294 (618)
T 1w63_A          220 LVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTETSKNVGNAIL  294 (618)
T ss_dssp             THHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCSSTHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccccccchHHHHH
Confidence            67878776642               4788889999999999987664322     23444444442     22356788


Q ss_pred             HHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCc
Q 013228          143 RIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSP  222 (447)
Q Consensus       143 ~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~  222 (447)
                      ..+++++..+...     ......+++.+..++.++++.++..++.+|..+....+..    + ......++..+.+++.
T Consensus       295 ~ea~~~i~~l~~~-----~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~----~-~~~~~~i~~~l~d~d~  364 (618)
T 1w63_A          295 YETVLTIMDIKSE-----SGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNA----V-QRHRSTIVDCLKDLDV  364 (618)
T ss_dssp             HHHHHHHHHSCCC-----HHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHH----H-GGGHHHHHHGGGSSCH
T ss_pred             HHHHHHHHhcCCC-----HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHH----H-HHHHHHHHHHccCCCh
Confidence            8899999887532     2223457788899999999999999999999998543321    1 2456788899999999


Q ss_pred             hhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH
Q 013228          223 SVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLL  302 (447)
Q Consensus       223 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l  302 (447)
                      .+|..++.++..++....  ...     +++.+...+.+. +.++|..++.+++.++...+.....     .++.+++++
T Consensus       365 ~Ir~~alelL~~l~~~~n--v~~-----iv~eL~~~l~~~-d~e~r~~~v~~I~~la~k~~~~~~~-----~v~~ll~lL  431 (618)
T 1w63_A          365 SIKRRAMELSFALVNGNN--IRG-----MMKELLYFLDSC-EPEFKADCASGIFLAAEKYAPSKRW-----HIDTIMRVL  431 (618)
T ss_dssp             HHHHHHHHHHHHHCCSSS--THH-----HHHHHHHHHHHC-CHHHHHHHHHHHHHHHHSSCCCHHH-----HHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccccc--HHH-----HHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHhCccHHH-----HHHHHHHHH
Confidence            999999999999987543  122     346777888777 8999999999999998742221111     367788888


Q ss_pred             hcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccC--CCHHHHHHHHHHHHHHHHh
Q 013228          303 QNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC--ADPEIVTVFLKGLEKILKV  366 (447)
Q Consensus       303 ~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~~~~~a~~~l~~l~~~  366 (447)
                      ......++..+...+..+.... ++....     ++..|+..+.+  ....+...++|+++.+...
T Consensus       432 ~~~~~~v~~~~~~~l~~ii~~~-p~l~~~-----~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~  491 (618)
T 1w63_A          432 TTAGSYVRDDAVPNLIQLITNS-VEMHAY-----TVQRLYKAILGDYSQQPLVQVAAWCIGEYGDL  491 (618)
T ss_dssp             HHTGGGSCSSHHHHHHHHHHHS-CSTHHH-----HHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHH
T ss_pred             HhccchhHHHHHHHHHHHHhcC-hhHHHH-----HHHHHHHHHhcccccHHHHHHHHHHHhhhHHH
Confidence            8776667777777777776542 222222     35566666654  3345556788999888753

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.58  E-value=7.8e-14  Score=148.73  Aligned_cols=403  Identities=12%  Similarity=0.085  Sum_probs=263.4

Q ss_pred             cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228            2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH   81 (447)
Q Consensus         2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (447)
                      +..+.++|+++|..|...|.+..... ......-....+++.+++.+.+++ +.+|..|+.+|+.++...++  ..+  .
T Consensus        12 L~~l~s~d~~~R~~A~~~L~~~l~~~-~~~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~--~~~--~   85 (1230)
T 1u6g_C           12 LEKMTSSDKDFRFMATNDLMTELQKD-SIKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKE--YQV--E   85 (1230)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHHTSSS-CCSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCH--HHH--H
T ss_pred             HHhcCCCCHhHHHHHHHHHHHHHccc-ccCCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCH--HHH--H
Confidence            35678999999999999999877653 111111122347888999998877 89999999999999874433  111  2


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhH------HHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCC
Q 013228           82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARC------RDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAG  155 (447)
Q Consensus        82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~------~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  155 (447)
                      .+++.++..+.++++.+|..++.+|+.++......      .... -...++.++..+..+.+..++..++.++..++..
T Consensus        86 ~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~-~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~  164 (1230)
T 1u6g_C           86 TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR  164 (1230)
T ss_dssp             HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHH-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence            35678888888888899999999999988433221      0111 1235788888884357788999999999999864


Q ss_pred             CCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC-CchhHhHHHHHHHH
Q 013228          156 KPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHP-SPSVLTRALQTVVN  234 (447)
Q Consensus       156 ~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~-~~~v~~~a~~~l~~  234 (447)
                      .+.........+++.+...+.++++.++..++.++..++...+..   + -..+++.++..+.+. ++.++..++.+++.
T Consensus       165 ~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~  240 (1230)
T 1u6g_C          165 QGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAA  240 (1230)
T ss_dssp             TCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---H-HHHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence            322222345778888999999999999999999999999765432   1 124577777777543 35788889999999


Q ss_pred             hhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-----------
Q 013228          235 IAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQ-----------  303 (447)
Q Consensus       235 l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~-----------  303 (447)
                      ++...+...... -..+++.++..+.+. ++.+|..+..++..++...++.....+. .+++.++..+.           
T Consensus       241 l~~~~~~~~~~~-l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~~~l~-~li~~ll~~l~~d~~~~~~~d~  317 (1230)
T 1u6g_C          241 ISRQAGHRIGEY-LEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYNYDDED  317 (1230)
T ss_dssp             HHHHSSGGGTTS-CTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC---------
T ss_pred             HHHHhHHHHHHH-HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHChHHHHHhHH-HHHHHHHHHhCCCCCCCCcccc
Confidence            886544322111 136788889999887 8899999999999888632221111111 12333322221           


Q ss_pred             --------------------------cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHH
Q 013228          304 --------------------------NAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFL  357 (447)
Q Consensus       304 --------------------------~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~  357 (447)
                                                +..+.+|..|+.++..++..........+  ..+++.+...+.+.++.++..++
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~d~~~~Vr~~a~  395 (1230)
T 1u6g_C          318 EDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY--KTVSPALISRFKEREENVKADVF  395 (1230)
T ss_dssp             ---------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH--TTTHHHHHSTTSCSSSHHHHHHH
T ss_pred             cccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH--HHHHHHHHHHcCCCchHHHHHHH
Confidence                                      11245789999999998874322122222  35678888888888899999999


Q ss_pred             HHHHHHHHhhhhhhhhhh-hc-c----cccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 013228          358 KGLEKILKVGEAEKNMDI-AI-G----DVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWCG  421 (447)
Q Consensus       358 ~~l~~l~~~~~~~~~~~~-~~-~----~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  421 (447)
                      .++..++........... .. .    ........+. ...++.+.+.+.++++.++..+...+..+...
T Consensus       396 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~  464 (1230)
T 1u6g_C          396 HAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV-PNIVKALHKQMKEKSVKTRQCCFNMLTELVNV  464 (1230)
T ss_dssp             HHHHHHHHHHCCC------------CCCHHHHHHHHT-THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccccccCccccccccchHHHHHHHh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence            999988864321000000 00 0    0000011111 23455666667788888888888887776543

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.57  E-value=1.6e-13  Score=141.65  Aligned_cols=400  Identities=13%  Similarity=0.139  Sum_probs=253.2

Q ss_pred             ccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh---HHHHH
Q 013228            3 AGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSED---TKVVI   79 (447)
Q Consensus         3 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~---~~~~~   79 (447)
                      ..+.++++.++..|++++..++.+..+....... ..+++.++..+++++ +.+|..|++++++++...+..   ...+ 
T Consensus       373 ~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~~~~~l-  449 (876)
T 1qgr_A          373 EHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPS-VVVRDTAAWTVGRICELLPEAAINDVYL-  449 (876)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHCGGGTSSTTTH-
T ss_pred             HHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCchhcccHHHH-
Confidence            4567889999999999999998764212222222 347899999999888 899999999999998743321   1111 


Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh---------------hHHHHHHhcCCHHHHHHHhcccc--chhHH
Q 013228           80 DHGAVPIFVKLLASPSDDIREQAVCALGNVAADSA---------------RCRDLVLSEEALIPLLTQLNKHA--KLSML  142 (447)
Q Consensus        80 ~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~---------------~~~~~~~~~~~l~~l~~~l~~~~--~~~~~  142 (447)
                       ..+++.++..+.++ +.++..++++|.+++....               .....+  ...++.++..+....  +..++
T Consensus       450 -~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~~~~~~~~r  525 (876)
T 1qgr_A          450 -APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLETTDRPDGHQNNLR  525 (876)
T ss_dssp             -HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHHTTSCSSCSTTHH
T ss_pred             -HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HHHHHHHHHHHhCcCcchhhHH
Confidence             14567788888774 8999999999999984311               000011  123556666664321  35677


Q ss_pred             HHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhcc-----------CC----hhHHHHHHHHHHHhccCCc-HHHHHHHH
Q 013228          143 RIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHS-----------ND----KEVMTDACRALFYLSEGTN-DEIQAVIE  206 (447)
Q Consensus       143 ~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~-----------~~----~~v~~~al~~l~~l~~~~~-~~~~~~~~  206 (447)
                      ..+..++..++...+.........++|.++..+..           .+    +.++..++.++..++.... ....... 
T Consensus       526 ~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-  604 (876)
T 1qgr_A          526 SSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS-  604 (876)
T ss_dssp             HHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH-
T ss_pred             HHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH-
Confidence            88888888888776544445556777777766542           12    4567788999999887655 3332222 


Q ss_pred             hCcHHHHHHhcCCCC--chhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHH
Q 013228          207 AGVCPRLVELLGHPS--PSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSE  284 (447)
Q Consensus       207 ~~~~~~L~~lL~~~~--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~  284 (447)
                      ..+++.++..+.+..  +.++..++.+++.++..........+. .+++.+...+.+..+..+|..++++++.++.....
T Consensus       605 ~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~  683 (876)
T 1qgr_A          605 DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQS  683 (876)
T ss_dssp             HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHH
Confidence            357788888887764  478999999999998643222121222 35677888887654688999999999999863222


Q ss_pred             HHHHHHHcCChHHHHHHHhc--CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCC----H-------H
Q 013228          285 HIQAVIDAGLIGPLVNLLQN--AEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCAD----P-------E  351 (447)
Q Consensus       285 ~~~~l~~~~~~~~L~~~l~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~----~-------~  351 (447)
                      .....+. .+++.++..+.+  .+.+++..+++++++++....++...++  ..+++.+...+....    +       .
T Consensus       684 ~~~~~~~-~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l--~~~~~~l~~~~~~~~~~~d~~~~~~~~~  760 (876)
T 1qgr_A          684 NIIPFCD-EVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYL--EVVLNTLQQASQAQVDKSDYDMVDYLNE  760 (876)
T ss_dssp             GGHHHHH-HHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHTCCCCTTCHHHHHHHHH
T ss_pred             hhhhhHH-HHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHH--HHHHHHHHHHHhccCCCCChHHHHHHHH
Confidence            2333333 378888888886  3678999999999999763222222222  124566666665432    2       6


Q ss_pred             HHHHHHHHHHHHHHhhhhhhh--hhhhcccccHHHHHHHHhchHHHHHHHhcCC--CHHHHHHHHHHHHHhcC
Q 013228          352 IVTVFLKGLEKILKVGEAEKN--MDIAIGDVNQYAQLVEEAEGLEKIENLRSHD--NDEIHEKSVKILETYWC  420 (447)
Q Consensus       352 ~~~~a~~~l~~l~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~--~~~v~~~a~~~l~~~~~  420 (447)
                      ++..++.++..++........  ... .....+|...+     ++.+..+..++  ++.++..|..++..+..
T Consensus       761 ~r~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~i-----~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~  827 (876)
T 1qgr_A          761 LRESCLEAYTGIVQGLKGDQENVHPD-VMLVQPRVEFI-----LSFIDHIAGDEDHTDGVVACAAGLIGDLCT  827 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHCSSSSCCGG-GGGSGGGHHHH-----HHHHHHHHTCSCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccCcccccch-HHHHHHHHHHH-----HHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence            788888888888765332100  000 00111122222     24444454555  78899999888887654

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.56  E-value=1.2e-14  Score=138.54  Aligned_cols=350  Identities=13%  Similarity=0.092  Sum_probs=235.8

Q ss_pred             CCHHHHHHHHHHHHHHHccCCCC----------chhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 013228            8 DDNNMQLEATTHIRKLLSNARSA----------PTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKV   77 (447)
Q Consensus         8 ~~~~~~~~a~~~l~~l~~~~~~~----------~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~   77 (447)
                      .++.+|..|+..|.++....-..          ....-....+-..|++.+.+++ +.+ ..++.+++.++...... . 
T Consensus        49 ~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~-~~v-~~~~~~i~~ia~~~~~~-~-  124 (462)
T 1ibr_B           49 NSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YRP-SSASQCVAGIACAEIPV-N-  124 (462)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SSS-CSHHHHHHHHHHHHGGG-T-
T ss_pred             CChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCC-chh-hHHHHHHHHHHHHhccc-c-
Confidence            36889999999999988642000          0000111234456778888887 678 88999999988632110 0 


Q ss_pred             HHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhcCC-hhHHHHHHhcCCHHHHHHHhcccc-chhHHHHHHHHHHHhc
Q 013228           78 VIDHGAVPIFVKLLASP--SDDIREQAVCALGNVAADS-ARCRDLVLSEEALIPLLTQLNKHA-KLSMLRIATWTLSNFC  153 (447)
Q Consensus        78 ~~~~~~i~~L~~ll~~~--~~~i~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~l~~~l~~~~-~~~~~~~a~~~L~~l~  153 (447)
                       .-.+.++.|+..+.++  ++.++..++.+|+.++... +..-... ....++.++..+.... +..++..+++++.++.
T Consensus       125 -~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~  202 (462)
T 1ibr_B          125 -QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSL  202 (462)
T ss_dssp             -CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHT
T ss_pred             -ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence             0136789999999888  8999999999999998532 2110000 0124667777774432 6889999999999876


Q ss_pred             CCCC--CCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHH
Q 013228          154 AGKP--KPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQT  231 (447)
Q Consensus       154 ~~~~--~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~  231 (447)
                      ....  .........+++.+...+.++++.++..+++++..++..........+..++++.++..+.+.++.++..++..
T Consensus       203 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~  282 (462)
T 1ibr_B          203 EFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEF  282 (462)
T ss_dssp             TTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence            4321  00111113357777778888899999999999999986544322212222567777888888899999999999


Q ss_pred             HHHhhcCChh---------------------hHHHHHhcCChHHHHHhhccC------CchhHHHHHHHHHHHHhcCCHH
Q 013228          232 VVNIAAGDDF---------------------QTQCIINCGALPYLLGLLIHN------HKKSIKTDACWTISNITAGNSE  284 (447)
Q Consensus       232 l~~l~~~~~~---------------------~~~~~~~~~~l~~l~~~l~~~------~~~~v~~~a~~~l~nl~~~~~~  284 (447)
                      +..++.....                     ..+... ..+++.+++.+...      .+..+|..|+.++..++...++
T Consensus       283 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~  361 (462)
T 1ibr_B          283 WSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED  361 (462)
T ss_dssp             HHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH
Confidence            9988753210                     000001 23456666666432      1457899999999999874322


Q ss_pred             HHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHH
Q 013228          285 HIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKIL  364 (447)
Q Consensus       285 ~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~  364 (447)
                         .++ ..+++.+...+.++++.+|..|+.+++.++....++...... ..+++.++..+.++++.++..|+++|.+++
T Consensus       362 ---~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~  436 (462)
T 1ibr_B          362 ---DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRIC  436 (462)
T ss_dssp             ---THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             ---HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence               222 236777778888889999999999999999864422111111 457899999999999999999999999999


Q ss_pred             Hhhhh
Q 013228          365 KVGEA  369 (447)
Q Consensus       365 ~~~~~  369 (447)
                      .....
T Consensus       437 ~~~~~  441 (462)
T 1ibr_B          437 ELLPE  441 (462)
T ss_dssp             HHGGG
T ss_pred             Hhccc
Confidence            86543

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.51  E-value=3.4e-13  Score=143.87  Aligned_cols=392  Identities=12%  Similarity=0.119  Sum_probs=254.0

Q ss_pred             ccccCCCHHHHHHHHHHHHHHHccCCCCc----hhhhhccCCHHHHHHhhc-CCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 013228            3 AGVWSDDNNMQLEATTHIRKLLSNARSAP----TEEVIPFGVVPRFVEFLM-REDYPQLQFEAAWALKNIVSGTSEDTKV   77 (447)
Q Consensus         3 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~----~~~~~~~~~v~~L~~ll~-~~~~~~v~~~a~~~L~~l~~~~~~~~~~   77 (447)
                      ..+.++++.+|..|+.+|..++.......    ...-.-..++|.|.+.+. +++ +.++..|+.++..++.........
T Consensus        93 ~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~-~~~~~~al~~l~~~~~~~~~~l~~  171 (1230)
T 1u6g_C           93 TNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED-VSVQLEALDIMADMLSRQGGLLVN  171 (1230)
T ss_dssp             HHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSC-HHHHHHHHHHHHHHHHHTCSSCTT
T ss_pred             HHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHhHhHHHH
Confidence            34567777888888888888876532210    011112347899999998 466 899999999999988422111100


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCC
Q 013228           78 VIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKP  157 (447)
Q Consensus        78 ~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~  157 (447)
                      . -..+++.++..+.++++.+|..++.+++.++...+.   .+ -...++.++..+....+..++..++.++..++...+
T Consensus       172 ~-~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~  246 (1230)
T 1u6g_C          172 F-HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAG  246 (1230)
T ss_dssp             T-HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSS
T ss_pred             H-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhH
Confidence            1 123567788888888999999999999999965432   11 223578888888554445667778888888876543


Q ss_pred             CCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC------------------
Q 013228          158 KPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH------------------  219 (447)
Q Consensus       158 ~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~------------------  219 (447)
                      ..-......++|.++..+.+.++.++..++.++..++........... ..+++.++..+..                  
T Consensus       247 ~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~  325 (1230)
T 1u6g_C          247 HRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDEDENAMDA  325 (1230)
T ss_dssp             GGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC-----------------
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCcccccccccccc
Confidence            322233478999999999999999999999999888864332211111 2344555444421                  


Q ss_pred             -------------------CCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc
Q 013228          220 -------------------PSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA  280 (447)
Q Consensus       220 -------------------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~  280 (447)
                                         ..+.+|..|+.++..++...+.....++ ..+++.++..+.+. +..+|..++.++..++.
T Consensus       326 ~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~  403 (1230)
T 1u6g_C          326 DGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVFHAYLSLLK  403 (1230)
T ss_dssp             -------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHHHHHHHHH
T ss_pred             cccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCC-chHHHHHHHHHHHHHHH
Confidence                               1245788999999999875543333333 36788888888877 89999999988887764


Q ss_pred             C--C-----------------HHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHH
Q 013228          281 G--N-----------------SEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPL  341 (447)
Q Consensus       281 ~--~-----------------~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L  341 (447)
                      .  .                 ......++ ..+++.+...+.++++.+|..++.+++.++..........+  ..+++.+
T Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l--~~ll~~l  480 (1230)
T 1u6g_C          404 QTRPVQSWLCDPDAMEQGETPLTMLQSQV-PNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI--PVLVPGI  480 (1230)
T ss_dssp             HHCCC------------CCCHHHHHHHHT-THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH--HHHHHHH
T ss_pred             HhccccccccCccccccccchHHHHHHHh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHH--HHHHHHH
Confidence            1  0                 11112222 22566677778888899999999999988764221111111  1357788


Q ss_pred             HhhccCCCH--HHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 013228          342 CDLLLCADP--EIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYW  419 (447)
Q Consensus       342 ~~ll~~~~~--~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  419 (447)
                      ...+.+..+  .++..++..+..++.......           +...+  ...++.+.....+++..++..|...+..+.
T Consensus       481 ~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~-----------~~~~l--~~llp~L~~~l~d~~~~v~~~al~~l~~l~  547 (1230)
T 1u6g_C          481 IFSLNDKSSSSNLKIDALSCLYVILCNHSPQV-----------FHPHV--QALVPPVVACVGDPFYKITSEALLVTQQLV  547 (1230)
T ss_dssp             HHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGG-----------GHHHH--TTTHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCcchHHHHHHHHHHHHHHhCCHHH-----------HHhHH--HHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence            888887654  888888988888876422211           12222  244666666667777777666666666544

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.50  E-value=2.1e-12  Score=109.08  Aligned_cols=187  Identities=20%  Similarity=0.154  Sum_probs=157.6

Q ss_pred             cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHH
Q 013228           38 FGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCR  117 (447)
Q Consensus        38 ~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~  117 (447)
                      .+.++.|+++|++++ +.+|..|++.|+.+..           .+.++.|+.++.++++.+|..++++|+.+..      
T Consensus        18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred             HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence            457999999999988 9999999999998865           2578999999999999999999999999852      


Q ss_pred             HHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 013228          118 DLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGT  197 (447)
Q Consensus       118 ~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~  197 (447)
                           .+.++.++..+ .++++.++..++++|..+..          ...++.|..++.++++.++..++++|+.+..  
T Consensus        80 -----~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--  141 (211)
T 3ltm_A           80 -----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--  141 (211)
T ss_dssp             -----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred             -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence                 23578888888 77889999999999998853          3578899999999999999999999999852  


Q ss_pred             cHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHH
Q 013228          198 NDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISN  277 (447)
Q Consensus       198 ~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~n  277 (447)
                               ...++.|..++.++++.++..++.+|+.+..  +         ..++.|..++.++ ++.+|..|..+|.+
T Consensus       142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~-~~~vr~~A~~aL~~  200 (211)
T 3ltm_A          142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETG-TGFARKVAVNYLET  200 (211)
T ss_dssp             ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHC-CHHHHHHHHHHHHC
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence                     2357889999999999999999999998853  1         3566788888888 99999999999999


Q ss_pred             HhcC
Q 013228          278 ITAG  281 (447)
Q Consensus       278 l~~~  281 (447)
                      +...
T Consensus       201 ~~~~  204 (211)
T 3ltm_A          201 HKSF  204 (211)
T ss_dssp             ----
T ss_pred             cCCC
Confidence            8654

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.50  E-value=2.1e-12  Score=109.04  Aligned_cols=188  Identities=20%  Similarity=0.172  Sum_probs=156.9

Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCC
Q 013228           81 HGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPI  160 (447)
Q Consensus        81 ~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~  160 (447)
                      .+.++.|+..|.++++.+|..+++.|+.+..           ...++.++..+ .+++..++..++++|..+..      
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSCHHHHHHHHHHHHHHCC------
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC------
Confidence            3578999999999999999999999998753           23578899988 67789999999999998863      


Q ss_pred             hhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCCh
Q 013228          161 FDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD  240 (447)
Q Consensus       161 ~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~  240 (447)
                          ...++.+..++.++++.++..++++|+.+..           .+.++.|..++.++++.++..++.+|+.+..   
T Consensus        80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---  141 (211)
T 3ltm_A           80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---  141 (211)
T ss_dssp             ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---
Confidence                3578899999999999999999999998863           2467889999999999999999999998843   


Q ss_pred             hhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHh
Q 013228          241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNA  320 (447)
Q Consensus       241 ~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l  320 (447)
                              ...++.|..++.++ ++.+|..++++|+.+..  ++         .++.|..++.++++.+|..|..+|.++
T Consensus       142 --------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~--~~---------~~~~L~~~l~d~~~~vr~~A~~aL~~~  201 (211)
T 3ltm_A          142 --------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG--ER---------VRAAMEKLAETGTGFARKVAVNYLETH  201 (211)
T ss_dssp             --------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS--HH---------HHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred             --------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc--hh---------HHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence                    23677899999888 99999999999999842  22         577788889999999999999999999


Q ss_pred             cCCC
Q 013228          321 TFGG  324 (447)
Q Consensus       321 ~~~~  324 (447)
                      ....
T Consensus       202 ~~~~  205 (211)
T 3ltm_A          202 KSFN  205 (211)
T ss_dssp             ----
T ss_pred             CCCC
Confidence            7753

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.49  E-value=7e-12  Score=104.93  Aligned_cols=185  Identities=20%  Similarity=0.185  Sum_probs=156.9

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCCh
Q 013228           82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIF  161 (447)
Q Consensus        82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~  161 (447)
                      +..+.++.+|.++++.+|..++++|+.+..           ...++.++..+ .+.+..++..++++|..+..       
T Consensus        14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~~L~~~~~-------   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD-------   74 (201)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-------
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC-------
Confidence            457889999999999999999999998753           13578899999 67889999999999998853       


Q ss_pred             hhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChh
Q 013228          162 DQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDF  241 (447)
Q Consensus       162 ~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~  241 (447)
                         ...++.+..++.++++.++..++++|+.+..           ...++.|..++.++++.+|..++++|+.+..    
T Consensus        75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----  136 (201)
T 3ltj_A           75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----  136 (201)
T ss_dssp             ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred             ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence               3578999999999999999999999998753           2367888999999999999999999998853    


Q ss_pred             hHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhc
Q 013228          242 QTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNAT  321 (447)
Q Consensus       242 ~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~  321 (447)
                             ...++.|..++.++ ++.+|..|+++|+.+.  .++         .++.|..++.++++.+|..|..+|.++.
T Consensus       137 -------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~--~~~---------~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          137 -------ERAVEPLIKALKDE-DGWVRQSAADALGEIG--GER---------VRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             -------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC--SHH---------HHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             -------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC--chh---------HHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence                   24677899999988 9999999999999983  223         5777888889999999999999999875


Q ss_pred             C
Q 013228          322 F  322 (447)
Q Consensus       322 ~  322 (447)
                      .
T Consensus       198 ~  198 (201)
T 3ltj_A          198 S  198 (201)
T ss_dssp             -
T ss_pred             h
Confidence            3

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.48  E-value=4.2e-12  Score=106.33  Aligned_cols=186  Identities=20%  Similarity=0.159  Sum_probs=158.1

Q ss_pred             ccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhH
Q 013228           37 PFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARC  116 (447)
Q Consensus        37 ~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~  116 (447)
                      ..+..+.++++|++++ +.+|..|+++|+.+..           .+.++.|+.++.++++.+|..++++|+.+...    
T Consensus        12 ~~~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~----   75 (201)
T 3ltj_A           12 DPEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGDE----   75 (201)
T ss_dssp             CHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG----
T ss_pred             CCcchHHHHHHhcCCC-HHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH----
Confidence            3457889999999999 9999999999998865           24689999999999999999999999998521    


Q ss_pred             HHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccC
Q 013228          117 RDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEG  196 (447)
Q Consensus       117 ~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~  196 (447)
                             ..++.++..+ .++++.++..++++|..+..          ...++.+..++.++++.++..++++|+.+.. 
T Consensus        76 -------~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-  136 (201)
T 3ltj_A           76 -------RAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-  136 (201)
T ss_dssp             -------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-
T ss_pred             -------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-
Confidence                   3578888888 67889999999999998853          3478889999999999999999999998853 


Q ss_pred             CcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHH
Q 013228          197 TNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTIS  276 (447)
Q Consensus       197 ~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~  276 (447)
                                .+.++.|..++.++++.++..|+.+|+.+.  .+         ..++.|..++.++ ++.+|..|..+|.
T Consensus       137 ----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~--~~---------~~~~~L~~~l~d~-~~~vr~~A~~aL~  194 (201)
T 3ltj_A          137 ----------ERAVEPLIKALKDEDGWVRQSAADALGEIG--GE---------RVRAAMEKLAETG-TGFARKVAVNYLE  194 (201)
T ss_dssp             ----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--SH---------HHHHHHHHHHHHC-CHHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--ch---------hHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence                      246788999999999999999999999883  22         2566788888888 9999999999998


Q ss_pred             HHh
Q 013228          277 NIT  279 (447)
Q Consensus       277 nl~  279 (447)
                      ++.
T Consensus       195 ~l~  197 (201)
T 3ltj_A          195 THK  197 (201)
T ss_dssp             HCC
T ss_pred             HHH
Confidence            873

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.39  E-value=5e-10  Score=109.67  Aligned_cols=327  Identities=15%  Similarity=0.132  Sum_probs=226.6

Q ss_pred             cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228            2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH   81 (447)
Q Consensus         2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (447)
                      ++++.+++...+.-+.-++..++..+ +   +.++-  +++.+.+-+++++ +-++..|+++|+++..  ++...     
T Consensus        80 vkl~~s~~~~~Krl~YL~l~~~~~~~-~---e~~~L--~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e~~~-----  145 (621)
T 2vgl_A           80 VNLLSSNRYTEKQIGYLFISVLVNSN-S---ELIRL--INNAIKNDLASRN-PTFMGLALHCIANVGS--REMAE-----  145 (621)
T ss_dssp             HHGGGCSCHHHHHHHHHHHHHSCCCC-H---HHHHH--HHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HHHHH-----
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHccCC-c---HHHHH--HHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HHHHH-----
Confidence            46778888888888888888887552 2   21111  4667778888888 9999999999999965  55333     


Q ss_pred             CChHHHHHhh--CCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCC
Q 013228           82 GAVPIFVKLL--ASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKP  159 (447)
Q Consensus        82 ~~i~~L~~ll--~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~  159 (447)
                      .+++.+.+++  .+.++.+|..|+.++.++....|..   +...+.++.+..+| .+.|+.++..|+.++..++...+..
T Consensus       146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~~~~~~~  221 (621)
T 2vgl_A          146 AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLL-NDQHLGVVTAATSLITTLAQKNPEE  221 (621)
T ss_dssp             HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHh-CCCCccHHHHHHHHHHHHHHhChHH
Confidence            3567888898  8899999999999999998755532   22236788888888 7888999999999999998765321


Q ss_pred             ChhhHhhhHHHHHHhhccC-------------ChhHHHHHHHHHHHhccCCc-HHHHHHHHhCcHHHHHHhcC-CC----
Q 013228          160 IFDQVRPALPALAQLVHSN-------------DKEVMTDACRALFYLSEGTN-DEIQAVIEAGVCPRLVELLG-HP----  220 (447)
Q Consensus       160 ~~~~~~~~l~~l~~ll~~~-------------~~~v~~~al~~l~~l~~~~~-~~~~~~~~~~~~~~L~~lL~-~~----  220 (447)
                      ........++.|.+++..+             ++=.+...+..+..++...+ .....+.+  .+..++..+. .+    
T Consensus       222 ~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~  299 (621)
T 2vgl_A          222 FKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKK  299 (621)
T ss_dssp             HTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSS
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCccccc
Confidence            1111223333344444321             56788888999988885433 33222322  3444443321 11    


Q ss_pred             ----C--chhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 013228          221 ----S--PSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGL  294 (447)
Q Consensus       221 ----~--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~  294 (447)
                          +  ..+...++.++..+.. .+....     .++..|..++.++ ++.+|..+...+..++...+. . ..+. ..
T Consensus       300 l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----~~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~-~-~~~~-~~  369 (621)
T 2vgl_A          300 VQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----RACNQLGQFLQHR-ETNLRYLALESMCTLASSEFS-H-EAVK-TH  369 (621)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----HHHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTT-H-HHHH-TT
T ss_pred             ccccchHHHHHHHHHHHHHhcCC-cHHHHH-----HHHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCc-H-HHHH-HH
Confidence                2  2777888888888753 222222     3566788888888 899999999999999875432 1 1222 36


Q ss_pred             hHHHHHHHh-cCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 013228          295 IGPLVNLLQ-NAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKV  366 (447)
Q Consensus       295 ~~~L~~~l~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~  366 (447)
                      .+.++..+. ++|..++..++..|..++.   +.+...     ++..|...+.+.+.+++..++..+..++..
T Consensus       370 ~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~---~~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k  434 (621)
T 2vgl_A          370 IETVINALKTERDVSVRQRAVDLLYAMCD---RSNAQQ-----IVAEMLSYLETADYSIREEIVLKVAILAEK  434 (621)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHHCC---HHHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCHhHHHHHHHHHHHHcC---hhhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence            778888888 8899999999999999985   344444     466777777778888888777777777643

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.38  E-value=2.5e-11  Score=118.84  Aligned_cols=360  Identities=10%  Similarity=0.102  Sum_probs=234.1

Q ss_pred             ccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhh--cCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228            3 AGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFL--MREDYPQLQFEAAWALKNIVSGTSEDTKVVID   80 (447)
Q Consensus         3 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll--~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (447)
                      +-|+++++.++-.|++++.++...   +    +. ..+++.+.+++  .+.+ +-||..|+.++.++...+++...   .
T Consensus       118 kDl~~~n~~ir~lALr~L~~i~~~---e----~~-~~l~~~v~~~l~~~d~~-~~VRK~A~~al~kl~~~~p~~~~---~  185 (621)
T 2vgl_A          118 NDLASRNPTFMGLALHCIANVGSR---E----MA-EAFAGEIPKILVAGDTM-DSVKQSAALCLLRLYRTSPDLVP---M  185 (621)
T ss_dssp             HHHHSCCHHHHHHHHHHHHHHCCH---H----HH-HHHTTHHHHHHHCSSSC-HHHHHHHHHHHHHHHHHCGGGCC---C
T ss_pred             HhcCCCCHHHHHHHHHHhhccCCH---H----HH-HHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHhChhhcC---c
Confidence            346788888899999998888532   1    22 23678888898  7777 99999999999999886655332   2


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhc----c--c----------cchhHHHH
Q 013228           81 HGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLN----K--H----------AKLSMLRI  144 (447)
Q Consensus        81 ~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~----~--~----------~~~~~~~~  144 (447)
                      .+.++.+..+|.++++.++.+|+.++..++..++..   +  ...++.++..|.    .  .          +++-.+..
T Consensus       186 ~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~---~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~  260 (621)
T 2vgl_A          186 GDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE---F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVK  260 (621)
T ss_dssp             CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH---H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHH
T ss_pred             hhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH---H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHH
Confidence            478999999999999999999999999998766531   1  123444444332    1  1          14556666


Q ss_pred             HHHHHHHhcCCCCCCChhhHhhhHHHHHHhh---------ccCC--hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHH
Q 013228          145 ATWTLSNFCAGKPKPIFDQVRPALPALAQLV---------HSND--KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRL  213 (447)
Q Consensus       145 a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll---------~~~~--~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L  213 (447)
                      .+..+..++.............+++.++..+         ++.+  ..+...+..++..+.. .+....     .++..|
T Consensus       261 il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----~~~~~L  334 (621)
T 2vgl_A          261 LLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----RACNQL  334 (621)
T ss_dssp             HHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----HHHHHH
T ss_pred             HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----HHHHHH
Confidence            7777777664321111111223444444322         2223  3788889999988863 222111     356788


Q ss_pred             HHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhc-cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHc
Q 013228          214 VELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLI-HNHKKSIKTDACWTISNITAGNSEHIQAVIDA  292 (447)
Q Consensus       214 ~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~-~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~  292 (447)
                      ..++.++++.++..++..+..++...+.. . ++ ......++..+. ++ +..+|..+..++..++.  +.+...    
T Consensus       335 ~~~L~~~~~niry~aL~~l~~l~~~~~~~-~-~~-~~~~~~i~~~L~~d~-d~~Ir~~aL~lL~~l~~--~~Nv~~----  404 (621)
T 2vgl_A          335 GQFLQHRETNLRYLALESMCTLASSEFSH-E-AV-KTHIETVINALKTER-DVSVRQRAVDLLYAMCD--RSNAQQ----  404 (621)
T ss_dssp             HHHSSCSCHHHHHHHHHHHHHHTTCTTTH-H-HH-HTTHHHHHHHHTTCC-CHHHHHHHHHHHHHHCC--HHHHHH----
T ss_pred             HHHhcCCCcchHHHHHHHHHHHHhccCcH-H-HH-HHHHHHHHHHhccCC-CHhHHHHHHHHHHHHcC--hhhHHH----
Confidence            89998899999999999999999766421 2 22 246778888888 77 89999999999999864  345544    


Q ss_pred             CChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhh
Q 013228          293 GLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKN  372 (447)
Q Consensus       293 ~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~  372 (447)
                       ++..|...+...+.+++..++.+++.++..-.+. ...     .++.|++++......+...+...+..++...+..+ 
T Consensus       405 -Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~-~~~-----~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~~-  476 (621)
T 2vgl_A          405 -IVAEMLSYLETADYSIREEIVLKVAILAEKYAVD-YTW-----YVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQ-  476 (621)
T ss_dssp             -HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSS-THH-----HHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSCH-
T ss_pred             -HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc-HHH-----HHHHHHHHHHhhcccchHHHHHHHHHHHhCChhHH-
Confidence             4556788888889999999999999887521111 111     36666777765444444445555666665433321 


Q ss_pred             hhhhcccccHHHHHHHHhchHHHHHHHh-cCC-CHHHHHHHHHHHHHhcC
Q 013228          373 MDIAIGDVNQYAQLVEEAEGLEKIENLR-SHD-NDEIHEKSVKILETYWC  420 (447)
Q Consensus       373 ~~~~~~~~~~~~~~i~~~~~~~~l~~l~-~~~-~~~v~~~a~~~l~~~~~  420 (447)
                                  ..     .+..+.+.. ... ...+...+.|++.+|.+
T Consensus       477 ------------~~-----~~~~l~~~l~~~~~~~~li~~~~wilGEy~~  509 (621)
T 2vgl_A          477 ------------GY-----AAKTVFEALQAPACHENLVKVGGYILGEFGN  509 (621)
T ss_dssp             ------------HH-----HHHHHHHHHTSSSCCHHHHHHHHHHHHHHTH
T ss_pred             ------------HH-----HHHHHHHHHcCccchHHHHHHHHHHhcchHH
Confidence                        11     112222222 222 34566777899888854

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.23  E-value=3.2e-09  Score=82.20  Aligned_cols=218  Identities=13%  Similarity=0.153  Sum_probs=175.0

Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCC
Q 013228           80 DHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKP  159 (447)
Q Consensus        80 ~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~  159 (447)
                      +..+++.++.+|.++-..++.+|+..+.+++...+...+.+     +..|+-+++.+...........+++.++..    
T Consensus        30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i----  100 (253)
T 2db0_A           30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKE----  100 (253)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHH----
T ss_pred             hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHh----
Confidence            34578899999999999999999999999998877765543     567888887787777877888888888854    


Q ss_pred             ChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCC
Q 013228          160 IFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGD  239 (447)
Q Consensus       160 ~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~  239 (447)
                      ......+++|.+..-.+-++++++.....+|..++...+....     +++.-+..++.+++..-+..|+..++.+....
T Consensus       101 ~Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~  175 (253)
T 2db0_A          101 KPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENS  175 (253)
T ss_dssp             CHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT
T ss_pred             CHHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccC
Confidence            3456688899999888899999999999999999977665433     56778889999999888999999999887766


Q ss_pred             hhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHH
Q 013228          240 DFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISN  319 (447)
Q Consensus       240 ~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~  319 (447)
                      .....     ..+|.|..+|.+. +.-+|..|+.+|.+++..++..+..+.      .-+.-+++.+..++..+..+|+.
T Consensus       176 ~~yv~-----PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V~egL~r  243 (253)
T 2db0_A          176 FKYVN-----PFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISR  243 (253)
T ss_dssp             HHHHG-----GGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHHHHHHHH
T ss_pred             ccccC-----cchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHHHHHHHH
Confidence            54322     5789999999999 999999999999999998887444322      23444566678888888889988


Q ss_pred             hcCC
Q 013228          320 ATFG  323 (447)
Q Consensus       320 l~~~  323 (447)
                      ++.-
T Consensus       244 l~l~  247 (253)
T 2db0_A          244 LLLL  247 (253)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            7653

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.19  E-value=9.9e-10  Score=108.99  Aligned_cols=218  Identities=17%  Similarity=0.108  Sum_probs=155.6

Q ss_pred             ccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhcC-Ch
Q 013228           37 PFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFV-KLLASPSDDIREQAVCALGNVAAD-SA  114 (447)
Q Consensus        37 ~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~-~ll~~~~~~i~~~a~~~L~~l~~~-~~  114 (447)
                      +..++| +++.|++++ +..|..|+++|++++. ++..+..+...|++..++ .+|.+++.++|..|+++|+||+.+ .+
T Consensus        33 ~~~i~P-ll~~L~S~~-~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~  109 (684)
T 4gmo_A           33 EDKILP-VLKDLKSPD-AKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEA  109 (684)
T ss_dssp             HHTTHH-HHHHHSSSC-CSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCH
T ss_pred             hhhHHH-HHHHcCCCC-HHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCc
Confidence            344444 567789999 8999999999999998 889999999999998765 578889999999999999999954 45


Q ss_pred             hHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhc
Q 013228          115 RCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLS  194 (447)
Q Consensus       115 ~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~  194 (447)
                      .....+...|++++|...+...         ...+........... ......+           ..+...++.+|++++
T Consensus       110 d~~~~l~~~~il~~L~~~l~~~---------~~~~~~~~~~~~~~~-~~~~~~~-----------~~~~~~~l~lL~~L~  168 (684)
T 4gmo_A          110 DFCVHLYRLDVLTAIEHAAKAV---------LETLTTSEPPFSKLL-KAQQRLV-----------WDITGSLLVLIGLLA  168 (684)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHH---------HHHHHCBTTBGGGSC-HHHHHHH-----------HHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHcChHHHHHHHHHhh---------HHHHhhhcccccccc-HHHHHHH-----------HHHHHHHHHHHHHHH
Confidence            6677788999999999998321         111222211110000 0001111           123455677888888


Q ss_pred             cCCcHHHHHHHHhCcHHHHHHhcCC---CCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhh--ccCCchhHHH
Q 013228          195 EGTNDEIQAVIEAGVCPRLVELLGH---PSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLL--IHNHKKSIKT  269 (447)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~L~~lL~~---~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l--~~~~~~~v~~  269 (447)
                      ..++.....+...+.++.|+.+|.+   ....++..|+.+|..++..++...+.+.+.+....+..++  ... +...+.
T Consensus       169 e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~  247 (684)
T 4gmo_A          169 LARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TDPRAV  247 (684)
T ss_dssp             HHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHH
T ss_pred             hCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-CcHHHH
Confidence            7777777778888899999988843   3457999999999999999998888888776543332222  233 344577


Q ss_pred             HHHHHHHHHh
Q 013228          270 DACWTISNIT  279 (447)
Q Consensus       270 ~a~~~l~nl~  279 (447)
                      .+++.+.|+.
T Consensus       248 la~giL~Ni~  257 (684)
T 4gmo_A          248 MACGVLHNVF  257 (684)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhHh
Confidence            8889999874

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=99.11  E-value=2.9e-09  Score=86.24  Aligned_cols=226  Identities=15%  Similarity=0.112  Sum_probs=172.3

Q ss_pred             hhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHH
Q 013228          165 RPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQ  244 (447)
Q Consensus       165 ~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~  244 (447)
                      .+.+..+..++.+.|+.++..++.+|..+....+.......-..+++.++.++.++++.+...|++++..+..+.+-...
T Consensus        32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence            45678899999999999999999999999976544444455557899999999999999999999999999987663333


Q ss_pred             HHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCC
Q 013228          245 CIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGG  324 (447)
Q Consensus       245 ~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~  324 (447)
                      .+..  +...+..++.++ ++-++.+++-.++-+--.++.       .+++..+.+++.+.+.+++..+..++.+++...
T Consensus       112 ~y~K--l~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S  181 (265)
T 3b2a_A          112 TFLK--AAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSS  181 (265)
T ss_dssp             HHHH--HHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred             HHHH--HHHHHHHHhcCC-CchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence            3322  566788889988 999999999999988332211       125667888888999999999999999999754


Q ss_pred             C-HHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHh-cC
Q 013228          325 T-HEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLR-SH  402 (447)
Q Consensus       325 ~-~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~-~~  402 (447)
                      . ++..     .+++.-+-.++++.|+.+++.|+.++..++...-...          ....   -.+......++. -.
T Consensus       182 ~D~~i~-----~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~----------~~~~---~~~~~~~v~~l~~~~  243 (265)
T 3b2a_A          182 ADSGHL-----TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLEN----------VKIE---LLKISRIVDGLVYRE  243 (265)
T ss_dssp             SSCCCG-----GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSC----------CHHH---HHHHHHHHHHGGGCS
T ss_pred             CCHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHh----------HHHH---HHHHHHHHHHHHHhc
Confidence            2 2221     2467777889999999999999999999987632211          1111   134456677777 67


Q ss_pred             CCHHHHHHHHHHHHHh
Q 013228          403 DNDEIHEKSVKILETY  418 (447)
Q Consensus       403 ~~~~v~~~a~~~l~~~  418 (447)
                      +.|.++.+|..+-+..
T Consensus       244 ~~~~~~~ka~~v~~~l  259 (265)
T 3b2a_A          244 GAPIIRLKAKKVSDLI  259 (265)
T ss_dssp             SCHHHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHH
Confidence            8899999988776654

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=99.10  E-value=1.5e-08  Score=100.65  Aligned_cols=265  Identities=14%  Similarity=0.126  Sum_probs=186.9

Q ss_pred             CCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCC-------CHHHHHHHHHHHHHHcCCChhhHHHHH
Q 013228            7 SDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMRED-------YPQLQFEAAWALKNIVSGTSEDTKVVI   79 (447)
Q Consensus         7 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~-------~~~v~~~a~~~L~~l~~~~~~~~~~~~   79 (447)
                      ++++.++.-|+..|..+..+...         .++..|...|.+++       .+.++..|+..|+.+..++..      
T Consensus       406 s~~~~ik~GAllaLGli~ag~~~---------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~------  470 (963)
T 4ady_A          406 ASSRFIKGGSLYGLGLIYAGFGR---------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN------  470 (963)
T ss_dssp             CSCHHHHHHHHHHHHHHTTTTTH---------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC------
T ss_pred             CCcHHHHHHHHHHHHHhcCCCcH---------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC------
Confidence            56788888888888887766311         14667777776543       367898999999997654321      


Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCC
Q 013228           80 DHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKP  159 (447)
Q Consensus        80 ~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~  159 (447)
                       ..+++.|...+.+++..+++.++.+|+.+-.++...       .++..++..+....+..+++.++.+|..+....   
T Consensus       471 -eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~-------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~---  539 (963)
T 4ady_A          471 -IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP-------EAIHDMFTYSQETQHGNITRGLAVGLALINYGR---  539 (963)
T ss_dssp             -HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC---
T ss_pred             -HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH-------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC---
Confidence             125677888888877788889999999874333211       135667776656667789999999999887654   


Q ss_pred             ChhhHhhhHHHHHHhhc-cCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhc-CCCCchhHhHHHHHHHHhhc
Q 013228          160 IFDQVRPALPALAQLVH-SNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELL-GHPSPSVLTRALQTVVNIAA  237 (447)
Q Consensus       160 ~~~~~~~~l~~l~~ll~-~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~a~~~l~~l~~  237 (447)
                           ...++.+++.|. +.++-++..++.+++--.....+..       .++.|+..+ .+.++.+|..|+..|+.+..
T Consensus       540 -----~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~-------aIq~LL~~~~~d~~d~VRraAViaLGlI~~  607 (963)
T 4ady_A          540 -----QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS-------AVKRLLHVAVSDSNDDVRRAAVIALGFVLL  607 (963)
T ss_dssp             -----GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH-------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTS
T ss_pred             -----hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHhccCCcHHHHHHHHHHHHhhcc
Confidence                 345566666665 5678888888877764443333221       245444443 56778899999999999887


Q ss_pred             CChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHH
Q 013228          238 GDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAI  317 (447)
Q Consensus       238 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL  317 (447)
                      +.++         .++.++.++.+..++.+|..++++++.++.+++.       ..++..|..+..+.+..||+.|+.+|
T Consensus       608 g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-------~~aid~L~~L~~D~d~~Vrq~Ai~AL  671 (963)
T 4ady_A          608 RDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-------QSAIDVLDPLTKDPVDFVRQAAMIAL  671 (963)
T ss_dssp             SSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-------HHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             CCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-------HHHHHHHHHHccCCCHHHHHHHHHHH
Confidence            6652         3455666555444999999999999999886542       11566677788888999999999999


Q ss_pred             HHhcCCCC
Q 013228          318 SNATFGGT  325 (447)
Q Consensus       318 ~~l~~~~~  325 (447)
                      +.+....+
T Consensus       672 G~Ig~gtn  679 (963)
T 4ady_A          672 SMILIQQT  679 (963)
T ss_dssp             HHHSTTCC
T ss_pred             HHHhcCCc
Confidence            99987543

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=99.07  E-value=1.1e-08  Score=91.38  Aligned_cols=272  Identities=14%  Similarity=0.064  Sum_probs=160.2

Q ss_pred             cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228            2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH   81 (447)
Q Consensus         2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (447)
                      +++++++|..++.-...++..++... + .   ++  =++..+.+=+++++ +-+|-.|+++|+++..  ++....    
T Consensus        74 ~kl~~s~d~~lKrLvYLyl~~~~~~~-~-e---~i--Lv~Nsl~kDl~~~N-~~iR~lALRtL~~I~~--~~m~~~----  139 (355)
T 3tjz_B           74 TKLFQSNDPTLRRMCYLTIKEMSCIA-E-D---VI--IVTSSLTKDMTGKE-DSYRGPAVRALCQITD--STMLQA----  139 (355)
T ss_dssp             HGGGGCCCHHHHHHHHHHHHHHTTTS-S-C---GG--GGHHHHHHHHHSSC-HHHHHHHHHHHHHHCC--TTTHHH----
T ss_pred             HHHhcCCCHHHHHHHHHHHHHhCCCH-H-H---HH--HHHHHHHhhcCCCc-HhHHHHHHHHHhcCCC--HHHHHH----
Confidence            56889999999999999998877652 2 2   22  26788999999999 9999999999999987  333332    


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCCh
Q 013228           82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIF  161 (447)
Q Consensus        82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~  161 (447)
                       +.+.+.+.+.+.++.+|..|+.+...|....|+..     .+++..+-+++ .+.++.++.+|+.++..+...+     
T Consensus       140 -l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d-----  207 (355)
T 3tjz_B          140 -IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKND-----  207 (355)
T ss_dssp             -HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTC-----
T ss_pred             -HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhc-----
Confidence             35667888899999999999999999998877532     25788888888 7778889999999999998653     


Q ss_pred             hhHhhhHHHHHHhhccC---ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcC
Q 013228          162 DQVRPALPALAQLVHSN---DKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG  238 (447)
Q Consensus       162 ~~~~~~l~~l~~ll~~~---~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~  238 (447)
                         ...+..++..+...   ++-.+...++.+..+...++..    ....+++.+...|++.++.|...|++++..+...
T Consensus       208 ---~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~----~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~  280 (355)
T 3tjz_B          208 ---RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS----RDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGC  280 (355)
T ss_dssp             ---HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---------------------CCCCCSSHHHHHHHHHHHTC----
T ss_pred             ---hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh----hHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCC
Confidence               22344445444432   3444445555555555433111    1236778888999999999999999999887652


Q ss_pred             ChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHH
Q 013228          239 DDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAI  317 (447)
Q Consensus       239 ~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL  317 (447)
                      ...    .. ..++..+..++.++ ++.+|..|...|..+....|+..+.     .-..+.+++.+++..+...|...|
T Consensus       281 ~~~----~~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t~Aittl  348 (355)
T 3tjz_B          281 SAK----EL-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIATLAITTL  348 (355)
T ss_dssp             ------------CCCTHHHHHHSS-SSSSHHHHHHCC------------------------------------------
T ss_pred             CHH----HH-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHHHHHHHh
Confidence            221    11 24567777888888 8999999999999998766654332     334466777777777665555444

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=99.04  E-value=2.2e-08  Score=89.47  Aligned_cols=277  Identities=13%  Similarity=0.139  Sum_probs=160.3

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 013228           40 VVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDL  119 (447)
Q Consensus        40 ~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~  119 (447)
                      +...+++++.+++ ..++...--.+.+++...++.   +   =++..|.+=+.++++-+|-.|+++|+++....  .-+.
T Consensus        69 lf~~v~kl~~s~d-~~lKrLvYLyl~~~~~~~~e~---i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~--m~~~  139 (355)
T 3tjz_B           69 AFFAMTKLFQSND-PTLRRMCYLTIKEMSCIAEDV---I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDST--MLQA  139 (355)
T ss_dssp             HHHHHHGGGGCCC-HHHHHHHHHHHHHHTTTSSCG---G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT--THHH
T ss_pred             HHHHHHHHhcCCC-HHHHHHHHHHHHHhCCCHHHH---H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH--HHHH
Confidence            5667788999999 899999888888888853332   1   24677888888999999999999999997543  2222


Q ss_pred             HHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcH
Q 013228          120 VLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTND  199 (447)
Q Consensus       120 ~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~  199 (447)
                           ..+.+-+.+ .+.++.++..|+.+...+....    .....+.++.+..++.+.++.++.+|+.++..+...+..
T Consensus       140 -----l~~~lk~~L-~d~~pyVRk~A~l~~~kL~~~~----pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~  209 (355)
T 3tjz_B          140 -----IERYMKQAI-VDKVPSVSSSALVSSLHLLKCS----FDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL  209 (355)
T ss_dssp             -----HHHHHHHHH-TCSSHHHHHHHHHHHHHHTTTC----HHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH
T ss_pred             -----HHHHHHHHc-CCCCHHHHHHHHHHHHHHhccC----HHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH
Confidence                 245556666 7889999999999999998654    334567889999999999999999999999999865532


Q ss_pred             HHHHHHHhCcHHHHHHhcCCC---CchhHhHHHHHHHHhhcCC-hhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHH
Q 013228          200 EIQAVIEAGVCPRLVELLGHP---SPSVLTRALQTVVNIAAGD-DFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTI  275 (447)
Q Consensus       200 ~~~~~~~~~~~~~L~~lL~~~---~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l  275 (447)
                      .         +..++..+...   ++-.+...++.+..++..+ +.     .....++.+..+|++. ++.|..+|+.++
T Consensus       210 a---------~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~-~~aVvyEa~k~I  274 (355)
T 3tjz_B          210 A---------VSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNK-HEMVVYEAASAI  274 (355)
T ss_dssp             H---------HHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCS-SHHHHHHHHHHH
T ss_pred             H---------HHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCC-ChHHHHHHHHHH
Confidence            2         22333333221   3333444455554554433 21     1235677888889988 999999999999


Q ss_pred             HHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHH
Q 013228          276 SNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTV  355 (447)
Q Consensus       276 ~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~  355 (447)
                      ..+...+..    .. ..++..|..++.++++.+|..|+..|..+... .|+....     .-..+.+++.++|..+...
T Consensus       275 ~~l~~~~~~----~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~-~P~~v~~-----~n~~ie~li~d~n~sI~t~  343 (355)
T 3tjz_B          275 VNLPGCSAK----EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMK-HPSAVTA-----CNLDLENLVTDANRSIATL  343 (355)
T ss_dssp             TC----------------CCCTHHHHHHSSSSSSHHHHHHCC--------------------------------------
T ss_pred             HhccCCCHH----HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH-CcHHHHH-----HHHHHHHHccCCcHhHHHH
Confidence            988542222    11 23566777888899999999999999888875 3333222     3556778889999887777


Q ss_pred             HHHHHH
Q 013228          356 FLKGLE  361 (447)
Q Consensus       356 a~~~l~  361 (447)
                      |+..|.
T Consensus       344 Aittll  349 (355)
T 3tjz_B          344 AITTLL  349 (355)
T ss_dssp             ------
T ss_pred             HHHHhh
Confidence            665543

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.00  E-value=2.4e-09  Score=106.29  Aligned_cols=197  Identities=15%  Similarity=0.052  Sum_probs=148.7

Q ss_pred             hhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHH-HHhcCCCCchhHhHHHHHHHHhhcC-Chhh
Q 013228          165 RPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRL-VELLGHPSPSVLTRALQTVVNIAAG-DDFQ  242 (447)
Q Consensus       165 ~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L-~~lL~~~~~~v~~~a~~~l~~l~~~-~~~~  242 (447)
                      ..++| +++.|+++++..+..|+++|++++.. +...+.+...+++..+ ..+|.+++..+|..|+++|.||+.. ..+.
T Consensus        34 ~~i~P-ll~~L~S~~~~~r~~A~~al~~l~~~-~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~  111 (684)
T 4gmo_A           34 DKILP-VLKDLKSPDAKSRTTAAGAIANIVQD-AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF  111 (684)
T ss_dssp             HTTHH-HHHHHSSSCCSHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             hhHHH-HHHHcCCCCHHHHHHHHHHHHHHHcC-cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence            34555 55668999999999999999999964 4445667778888765 5678999999999999999999864 4566


Q ss_pred             HHHHHhcCChHHHHHhhccCC-------------c-------hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH
Q 013228          243 TQCIINCGALPYLLGLLIHNH-------------K-------KSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLL  302 (447)
Q Consensus       243 ~~~~~~~~~l~~l~~~l~~~~-------------~-------~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l  302 (447)
                      +..++..|+++.|..++....             .       ..+...++.+|.++|.++.+....+...+.++.++..+
T Consensus       112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L  191 (684)
T 4gmo_A          112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL  191 (684)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence            778889999999998885320             0       12334577888999888888888888889999999988


Q ss_pred             hcC---chhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChH---HHHhhccCCCHHHHHHHHHHHHHHHH
Q 013228          303 QNA---EFDIKNWAARAISNATFGGTHEQIKYLVREGCIK---PLCDLLLCADPEIVTVFLKGLEKILK  365 (447)
Q Consensus       303 ~~~---~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~---~L~~ll~~~~~~~~~~a~~~l~~l~~  365 (447)
                      .+.   ..+++..|+.+|..++.. +++....+.+.+...   .+..+.++.++ .+..+++.+.|++.
T Consensus       192 ~~~~~~~~~v~~~a~~~L~~ls~d-n~~~~~~i~~~~~~~~~~~ll~~~~~~~~-~~~la~giL~Ni~~  258 (684)
T 4gmo_A          192 ISADIAPQDIYEEAISCLTTLSED-NLKVGQAITDDQETHVYDVLLKLATGTDP-RAVMACGVLHNVFT  258 (684)
T ss_dssp             HHHCCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHTCCSSCHHHHHHHHHHSSCT-THHHHHHHHHHHHH
T ss_pred             HhcCCCcHHHHHHHHHHHHHHhcc-CHHHHHHHHhcchHHHHHHHHHHhcCCcH-HHHHHHHHHHhHhh
Confidence            643   367999999999999987 567777777766433   33333334443 45677888888864

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.99  E-value=6.2e-07  Score=69.65  Aligned_cols=217  Identities=14%  Similarity=0.128  Sum_probs=168.9

Q ss_pred             hccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCh
Q 013228           36 IPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLA-SPSDDIREQAVCALGNVAADSA  114 (447)
Q Consensus        36 ~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~i~~~a~~~L~~l~~~~~  114 (447)
                      .+..++..++.+|.+.- ..||..|+..+..++...++....++     ..|+.+++ +..-..-+...++++.++...|
T Consensus        29 ~d~~~l~~lI~~LDDDl-wtV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEaIpltqeIa~a~G~la~i~P  102 (253)
T 2db0_A           29 YDESVLKKLIELLDDDL-WTVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP  102 (253)
T ss_dssp             HCHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH
T ss_pred             hhHHHHHHHHHHhccHH-HHHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhcccCchHHHHHHHHhHHHHhCH
Confidence            34568889999998888 79999999999999998888766543     55666655 4556666788899999997776


Q ss_pred             hHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhc
Q 013228          115 RCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLS  194 (447)
Q Consensus       115 ~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~  194 (447)
                      +.-..     .+|.+..-. .-.++.++-+..++|..+++..    .....+++.-+..++.++|..-+..++..+..+.
T Consensus       103 e~v~~-----vVp~lfany-rigd~kikIn~~yaLeeIaran----P~l~~~v~rdi~smltskd~~Dkl~aLnFi~alG  172 (253)
T 2db0_A          103 ELVKS-----MIPVLFANY-RIGDEKTKINVSYALEEIAKAN----PMLMASIVRDFMSMLSSKNREDKLTALNFIEAMG  172 (253)
T ss_dssp             HHHHH-----HHHHHHHHS-CCCSHHHHHHHHHHHHHHHHHC----HHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCC
T ss_pred             HHHHh-----hHHHHHHHH-hcCCccceecHHHHHHHHHHhC----hHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence            54222     355566655 3448899999999999998764    3455778888999999999888888998888888


Q ss_pred             cCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHH
Q 013228          195 EGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWT  274 (447)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~  274 (447)
                      .+.....     ...+|.|..+|.+.+.-+|..+..+|.+++..++..+..+      ...++-+.+. +..+.+.....
T Consensus       173 en~~~yv-----~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii------~~kl~e~~D~-S~lv~~~V~eg  240 (253)
T 2db0_A          173 ENSFKYV-----NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVV------IKRLEELNDT-SSLVNKTVKEG  240 (253)
T ss_dssp             TTTHHHH-----GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHH------HHHHHHCCCS-CHHHHHHHHHH
T ss_pred             ccCcccc-----CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHH------HHHHHHhcCc-HHHHHHHHHHH
Confidence            6654432     3678999999999999999999999999999998765533      3355667777 78888888888


Q ss_pred             HHHHhc
Q 013228          275 ISNITA  280 (447)
Q Consensus       275 l~nl~~  280 (447)
                      |+.+..
T Consensus       241 L~rl~l  246 (253)
T 2db0_A          241 ISRLLL  246 (253)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887765

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.96  E-value=3.2e-07  Score=83.77  Aligned_cols=321  Identities=12%  Similarity=0.106  Sum_probs=197.3

Q ss_pred             CCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCh---hHHHHHHhcCCH-HHHHHHhccccchhHHHHHHHHHHHhcCC
Q 013228           81 HGAVPIFVKLLAS-PSDDIREQAVCALGNVAADSA---RCRDLVLSEEAL-IPLLTQLNKHAKLSMLRIATWTLSNFCAG  155 (447)
Q Consensus        81 ~~~i~~L~~ll~~-~~~~i~~~a~~~L~~l~~~~~---~~~~~~~~~~~l-~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  155 (447)
                      ..++..++.+|.. .+.++.+..+..+.-+...++   .....+.+.... ..+........+.-....++.++..++..
T Consensus        76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~  155 (480)
T 1ho8_A           76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN  155 (480)
T ss_dssp             STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred             chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence            3577888998875 688999999999999987776   333443333222 22333332334444556666666666644


Q ss_pred             CCCCChhhHhhhHH--HHHHhhccC-ChhHHHHHHHHHHHhccCCcHHHHHHHHh--CcHHHHHHhcC----CC------
Q 013228          156 KPKPIFDQVRPALP--ALAQLVHSN-DKEVMTDACRALFYLSEGTNDEIQAVIEA--GVCPRLVELLG----HP------  220 (447)
Q Consensus       156 ~~~~~~~~~~~~l~--~l~~ll~~~-~~~v~~~al~~l~~l~~~~~~~~~~~~~~--~~~~~L~~lL~----~~------  220 (447)
                      .+. .......++.  -+...|+.. +...+.-++.++..+...+..+ ..+.+.  +.++.++.+++    +.      
T Consensus       156 ~~~-~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R-~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~  233 (480)
T 1ho8_A          156 GLH-NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYR-DVIWLHEKKFMPTLFKILQRATDSQLATRIV  233 (480)
T ss_dssp             TTC-CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHH-HHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred             CCc-cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHH-HHHHHcccchhHHHHHHHHHhhccccccccc
Confidence            322 2333344444  344455543 3455666888888888655443 344433  23555544332    11      


Q ss_pred             -------CchhHhHHHHHHHHhhcCChhhHHHHHhcCCh--HHHHHhhccCCchhHHHHHHHHHHHHhcCCH----HHHH
Q 013228          221 -------SPSVLTRALQTVVNIAAGDDFQTQCIINCGAL--PYLLGLLIHNHKKSIKTDACWTISNITAGNS----EHIQ  287 (447)
Q Consensus       221 -------~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l--~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~----~~~~  287 (447)
                             ...++..++.|++-++...+ ....+...++.  ..|+.+++....+++.+-++.++.|+....+    ....
T Consensus       234 ~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~  312 (480)
T 1ho8_A          234 ATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK  312 (480)
T ss_dssp             -----CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred             cccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHH
Confidence                   23457889999998887554 55556555533  5667777765478899999999999988542    2233


Q ss_pred             H-HHHcCChHHHHHHHhc---CchhHHHHHHHHHHH-------h--------------cCCCCHH---------HHHHHH
Q 013228          288 A-VIDAGLIGPLVNLLQN---AEFDIKNWAARAISN-------A--------------TFGGTHE---------QIKYLV  333 (447)
Q Consensus       288 ~-l~~~~~~~~L~~~l~~---~~~~v~~~a~~aL~~-------l--------------~~~~~~~---------~~~~l~  333 (447)
                      . ++..++ +.++..|..   .|+++....-.....       +              ... +|-         +...|.
T Consensus       313 ~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~W-SP~H~se~FW~ENa~kf~  390 (480)
T 1ho8_A          313 QLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCW-SPPHVDNGFWSDNIDEFK  390 (480)
T ss_dssp             HHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCC-CGGGGCHHHHHHHSGGGS
T ss_pred             HHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCccc-CCCccchhHHHHHHHHHH
Confidence            2 333344 445566653   355554332221111       1              111 111         111222


Q ss_pred             Hc--CChHHHHhhccC----------CCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhc
Q 013228          334 RE--GCIKPLCDLLLC----------ADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRS  401 (447)
Q Consensus       334 ~~--~~l~~L~~ll~~----------~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~  401 (447)
                      ++  .++..|+++|++          .|+.+...|+.=+..+++.-+..             +..+.+.|+-+.+.+|++
T Consensus       391 e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~g-------------r~i~~~lg~K~~VM~Lm~  457 (480)
T 1ho8_A          391 KDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPES-------------IDVLDKTGGKADIMELLN  457 (480)
T ss_dssp             SGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTH-------------HHHHHHHSHHHHHHHHTS
T ss_pred             hcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcch-------------hHHHHHcCcHHHHHHHhc
Confidence            21  236788888873          36778888888899999876654             678889999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhc
Q 013228          402 HDNDEIHEKSVKILETYW  419 (447)
Q Consensus       402 ~~~~~v~~~a~~~l~~~~  419 (447)
                      |++++|+..|..++.++.
T Consensus       458 h~d~~Vr~~AL~avQklm  475 (480)
T 1ho8_A          458 HSDSRVKYEALKATQAII  475 (480)
T ss_dssp             CSSHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            999999999999988764

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.90  E-value=4.2e-07  Score=90.42  Aligned_cols=291  Identities=15%  Similarity=0.119  Sum_probs=197.0

Q ss_pred             HHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhc---CCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHH
Q 013228           11 NMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLM---REDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIF   87 (447)
Q Consensus        11 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L   87 (447)
                      ..++.|+..|..+-... .        .+++..|-+.|.   +++ +.++..|+.+|+.+..+...        .++..|
T Consensus       373 ~~k~sA~aSLGlIh~g~-~--------~~gl~~L~~yL~~~~s~~-~~ik~GAllaLGli~ag~~~--------~~~~lL  434 (963)
T 4ady_A          373 WAKFTATASLGVIHKGN-L--------LEGKKVMAPYLPGSRASS-RFIKGGSLYGLGLIYAGFGR--------DTTDYL  434 (963)
T ss_dssp             HHHHHHHHHHHHHTSSC-T--------TTHHHHHTTTSTTSCCSC-HHHHHHHHHHHHHHTTTTTH--------HHHHHH
T ss_pred             HHHHHHHHHhhhhccCc-h--------HHHHHHHHHhccccCCCc-HHHHHHHHHHHHHhcCCCcH--------HHHHHH
Confidence            34556666665554442 1        134666667775   445 89999999999999875432        146777


Q ss_pred             HHhhCCCC--------HHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCC
Q 013228           88 VKLLASPS--------DDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKP  159 (447)
Q Consensus        88 ~~ll~~~~--------~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~  159 (447)
                      ...+.+++        +.++..|+..|+-...++..  +     .++..|...+ .+.+..+.+.++.++..+..+..+ 
T Consensus       435 ~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~--e-----ev~e~L~~~L-~dd~~~~~~~AalALGli~vGTgn-  505 (963)
T 4ady_A          435 KNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN--I-----EVYEALKEVL-YNDSATSGEAAALGMGLCMLGTGK-  505 (963)
T ss_dssp             HHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC--H-----HHHHHHHHHH-HTCCHHHHHHHHHHHHHHHTTCCC-
T ss_pred             HHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC--H-----HHHHHHHHHH-hcCCHHHHHHHHHHHhhhhcccCC-
Confidence            77776544        67888999999997644421  1     1356677777 444445666788888877544311 


Q ss_pred             ChhhHhhhHHHHHHhh-ccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhc-CCCCchhHhHHHHHHHHhhc
Q 013228          160 IFDQVRPALPALAQLV-HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELL-GHPSPSVLTRALQTVVNIAA  237 (447)
Q Consensus       160 ~~~~~~~~l~~l~~ll-~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~a~~~l~~l~~  237 (447)
                           ..++..|++.+ .+.++.++..+..+|+.+....++.         ++.++..| .+.++-+|..++.+++--..
T Consensus       506 -----~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~---------~~~li~~L~~~~dp~vRygaa~alglAya  571 (963)
T 4ady_A          506 -----PEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL---------ADDLITKMLASDESLLRYGGAFTIALAYA  571 (963)
T ss_dssp             -----HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG---------GHHHHHHHHHCSCHHHHHHHHHHHHHHTT
T ss_pred             -----HHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH---------HHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence                 23445555543 4567889999999999887666543         34555555 35778888888888875554


Q ss_pred             CChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH-hcCchhHHHHHHHH
Q 013228          238 GDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLL-QNAEFDIKNWAARA  316 (447)
Q Consensus       238 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l-~~~~~~v~~~a~~a  316 (447)
                      +.... .      .++.|+..+.+..+..+|..|+.+|+.+..+.++         .++.++..+ ++.++.+|..|+.+
T Consensus       572 GTGn~-~------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalA  635 (963)
T 4ady_A          572 GTGNN-S------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFA  635 (963)
T ss_dssp             TSCCH-H------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHH
T ss_pred             CCCCH-H------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHH
Confidence            44322 1      2344555544333788999999999998776542         566677655 46799999999999


Q ss_pred             HHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 013228          317 ISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKV  366 (447)
Q Consensus       317 L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~  366 (447)
                      |+.++.....   .     .+++.|..+.++.+..++..|+.+|..+..-
T Consensus       636 LGli~aGn~~---~-----~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~g  677 (963)
T 4ady_A          636 LGIACAGKGL---Q-----SAIDVLDPLTKDPVDFVRQAAMIALSMILIQ  677 (963)
T ss_dssp             HHHHTSSSCC---H-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTT
T ss_pred             HHHhccCCCc---H-----HHHHHHHHHccCCCHHHHHHHHHHHHHHhcC
Confidence            9999764321   1     1477788889999999999999999988754

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.87  E-value=7e-08  Score=78.30  Aligned_cols=184  Identities=16%  Similarity=0.126  Sum_probs=145.5

Q ss_pred             CcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcC---CHH
Q 013228          208 GVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAG---NSE  284 (447)
Q Consensus       208 ~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~---~~~  284 (447)
                      +.+..+..+|.+.++.++..++.+|..+...-+.......-..+++.++.++++. +..+.-.|..++..+..+   +++
T Consensus        33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~-dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQE-NEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCST-THHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHcCCCCCHH
Confidence            4678899999999999999999999999876544433333346899999999999 999999999999999875   334


Q ss_pred             HHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHH
Q 013228          285 HIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKIL  364 (447)
Q Consensus       285 ~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~  364 (447)
                      ....     +...+.+++.++++-++.+|+..++.+-....   ..     +++..+.+++++.+++++..++.++.++.
T Consensus       112 ~y~K-----l~~aL~dlik~~~~il~~eaae~Lgklkv~~~---~~-----~V~~~l~sLl~Skd~~vK~agl~~L~eia  178 (265)
T 3b2a_A          112 TFLK-----AAKTLVSLLESPDDMMRIETIDVLSKLQPLED---SK-----LVRTYINELVVSPDLYTKVAGFCLFLNML  178 (265)
T ss_dssp             HHHH-----HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC---CH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHG
T ss_pred             HHHH-----HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc---hH-----HHHHHHHHHHhCCChhHHHHHHHHHHHhh
Confidence            3332     56678889999999999999999999943321   11     24778888999999999999999999998


Q ss_pred             HhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 013228          365 KVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWCG  421 (447)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  421 (447)
                      ...++....                .+.++-+..+++++++.++++|..++++.+..
T Consensus       179 ~~S~D~~i~----------------~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~  219 (265)
T 3b2a_A          179 NSSADSGHL----------------TLILDEIPSLLQNDNEFIVELALDVLEKALSF  219 (265)
T ss_dssp             GGCSSCCCG----------------GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred             cccCCHHHH----------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            765542211                23345566889999999999999999998875

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.84  E-value=2.6e-08  Score=85.66  Aligned_cols=185  Identities=16%  Similarity=0.220  Sum_probs=141.5

Q ss_pred             HHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhc-cCChhHHHHHHHHHHHhccCCcHHHHHHHH
Q 013228          128 PLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVH-SNDKEVMTDACRALFYLSEGTNDEIQAVIE  206 (447)
Q Consensus       128 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~-~~~~~v~~~al~~l~~l~~~~~~~~~~~~~  206 (447)
                      .+.+.+ .+.++..+..++..|..+....+.........+++.+...+. +.+..++..++.++..++..-...... .-
T Consensus        19 ~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~-~~   96 (242)
T 2qk2_A           19 DFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN-YA   96 (242)
T ss_dssp             THHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH-HH
T ss_pred             HHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH-HH
Confidence            466677 788999999999999999876322212223677888999995 899999999999999999543222222 22


Q ss_pred             hCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcC-CHHH
Q 013228          207 AGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAG-NSEH  285 (447)
Q Consensus       207 ~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~-~~~~  285 (447)
                      ..+++.++..+.+++..+|..+..++..++...+ . .     .+++.+...+.+. ++.+|..++..++.+... .++.
T Consensus        97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~-~-----~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~~  168 (242)
T 2qk2_A           97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-L-E-----AQQESIVESLSNK-NPSVKSETALFIARALTRTQPTA  168 (242)
T ss_dssp             HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-H-H-----HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-H-H-----HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCCC
Confidence            3578999999999999999999999999987543 1 1     2567888899988 999999999999997553 3331


Q ss_pred             -HHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCC
Q 013228          286 -IQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFG  323 (447)
Q Consensus       286 -~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~  323 (447)
                       ....+. .++|.+..++.+.++++|..|..+++.++..
T Consensus       169 ~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~  206 (242)
T 2qk2_A          169 LNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIKL  206 (242)
T ss_dssp             CCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence             122233 4899999999999999999999999998753

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.83  E-value=9.7e-08  Score=82.06  Aligned_cols=181  Identities=13%  Similarity=0.111  Sum_probs=136.5

Q ss_pred             ccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhc-CCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228            3 AGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLM-REDYPQLQFEAAWALKNIVSGTSEDTKVVIDH   81 (447)
Q Consensus         3 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (447)
                      +.+.+.++..|..|+..|..++.+........ . ..+++.|...+. +++ ..++..|+.+++.++..-........ .
T Consensus        22 ~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~-~~i~~~L~~~l~kd~~-~~V~~~a~~~l~~la~~l~~~~~~~~-~   97 (242)
T 2qk2_A           22 DKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-Y-GALVSALKKVITKDSN-VVLVAMAGKCLALLAKGLAKRFSNYA-S   97 (242)
T ss_dssp             HHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-C-HHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHGGGGHHHH-H
T ss_pred             hhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-H-HHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHHhhhHHHHH-H
Confidence            46788999999999999999988631111111 1 245778888884 777 89999999999999862211111211 2


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCC-CC-C
Q 013228           82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK-PK-P  159 (447)
Q Consensus        82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~-~  159 (447)
                      .+++.++..+.++++.+|..+..+|..++...+ ..      ..++.+...+ .+.++.++..++..+..+.... +. .
T Consensus        98 ~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~~------~ll~~l~~~l-~~~~~~vr~~~l~~l~~~l~~~~~~~~  169 (242)
T 2qk2_A           98 ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-LE------AQQESIVESL-SNKNPSVKSETALFIARALTRTQPTAL  169 (242)
T ss_dssp             HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-HH------HHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-HH------HHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence            478999999999999999999999999986543 21      2367777877 6678899999999999965543 32 2


Q ss_pred             ChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 013228          160 IFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSE  195 (447)
Q Consensus       160 ~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~  195 (447)
                      .......++|.+..++.+.++++|..+..+++.+..
T Consensus       170 ~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          170 NKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             CHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence            344557899999999999999999999999988773

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.74  E-value=1.4e-07  Score=81.00  Aligned_cols=192  Identities=10%  Similarity=0.079  Sum_probs=139.4

Q ss_pred             HHHHhccccchhHHHHHHHHHHH-hcCCCCCCC--hhhHhhhHHHHHHhh-ccCChhHHHHHHHHHHHhccCCc-HHHHH
Q 013228          129 LLTQLNKHAKLSMLRIATWTLSN-FCAGKPKPI--FDQVRPALPALAQLV-HSNDKEVMTDACRALFYLSEGTN-DEIQA  203 (447)
Q Consensus       129 l~~~l~~~~~~~~~~~a~~~L~~-l~~~~~~~~--~~~~~~~l~~l~~ll-~~~~~~v~~~al~~l~~l~~~~~-~~~~~  203 (447)
                      +.+.+ .+.++.-+..++..|.. ++...+...  ......++..+.+.+ ++.+..++..++.+++.++..-. .....
T Consensus        21 f~~~l-~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           21 FQERI-TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             HHHHH-TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             HHHHh-hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            34455 67889999999999999 875543322  222356788888999 78899999999999999985322 11110


Q ss_pred             HHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCH
Q 013228          204 VIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNS  283 (447)
Q Consensus       204 ~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~  283 (447)
                      -....+++.++..+.+....++..+..++..++...+.....-.-..+++.+...+.+. ++.+|..++.+|..++...+
T Consensus       100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~~  178 (249)
T 2qk1_A          100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEEK  178 (249)
T ss_dssp             HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcC
Confidence            11123689999999999999999999988888864421100000012566888899998 99999999999999886433


Q ss_pred             ---HHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcC
Q 013228          284 ---EHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATF  322 (447)
Q Consensus       284 ---~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~  322 (447)
                         ......+...++|.+..++.+.++.+|..|..+++.++.
T Consensus       179 ~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          179 DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             SCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             CcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence               434444434599999999999999999999999998864

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.69  E-value=1.8e-07  Score=80.34  Aligned_cols=191  Identities=13%  Similarity=0.161  Sum_probs=137.9

Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHH-HcCCChhhHHHHHh-CCChHHHHHhh-CCCCHHHHHHHHHHHHHhhcCC--hhHH
Q 013228           43 RFVEFLMREDYPQLQFEAAWALKN-IVSGTSEDTKVVID-HGAVPIFVKLL-ASPSDDIREQAVCALGNVAADS--ARCR  117 (447)
Q Consensus        43 ~L~~ll~~~~~~~v~~~a~~~L~~-l~~~~~~~~~~~~~-~~~i~~L~~ll-~~~~~~i~~~a~~~L~~l~~~~--~~~~  117 (447)
                      .+.+.+++.+ +.-|..|+..|.. ++.+.++....-.+ ..++..|...+ .+.+..++..|+.+++.++..-  +.+.
T Consensus        20 ~f~~~l~s~~-w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~   98 (249)
T 2qk1_A           20 DFQERITSSK-WKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFS   98 (249)
T ss_dssp             THHHHHTCSS-HHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred             hHHHHhhcCC-HHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccccc
Confidence            3556678888 7999999999999 87533332100000 13466777888 6789999999999999998422  1221


Q ss_pred             -HHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCCh-hhHhhhHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 013228          118 -DLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIF-DQVRPALPALAQLVHSNDKEVMTDACRALFYLSE  195 (447)
Q Consensus       118 -~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~  195 (447)
                       ...  ...++.++..+ .+....++..+..++..++...+.... .....+++.+...+++.++.++..++.+|..+..
T Consensus        99 ~~y~--~~llp~ll~~l-~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~  175 (249)
T 2qk1_A           99 KDYV--SLVFTPLLDRT-KEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMK  175 (249)
T ss_dssp             HHHH--HHHHHHHHHGG-GCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHH--HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence             221  12478888888 566678989988888888875422111 1256789999999999999999999999999885


Q ss_pred             CCc---HHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhc
Q 013228          196 GTN---DEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAA  237 (447)
Q Consensus       196 ~~~---~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~  237 (447)
                      ...   ......+...+++.+.+++.+.+..+|..|..+++.++.
T Consensus       176 ~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          176 EEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             HCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            543   222222225789999999999999999999999998874

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.61  E-value=5.4e-06  Score=83.63  Aligned_cols=290  Identities=13%  Similarity=0.169  Sum_probs=201.3

Q ss_pred             HHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh---hhHHHHHhCCChHH
Q 013228           10 NNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTS---EDTKVVIDHGAVPI   86 (447)
Q Consensus        10 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~~~i~~   86 (447)
                      ..-+..++..+..+..+....   ..+..+++..|.+.+.... ..  +.|+.++..++....   ..-..++  +.++.
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~k~-~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~   99 (986)
T 2iw3_A           28 ADNRHEIASEVASFLNGNIIE---HDVPEHFFGELAKGIKDKK-TA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPA   99 (986)
T ss_dssp             TTTHHHHHHHHHHHHTSSCSS---SSCCHHHHHHHHHHHTSHH-HH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHH
T ss_pred             hhHHHHHHHHHHHHHhccccc---cccchhHHHHHHHHHhccC-CH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHH
Confidence            444566777777776653111   1122367788888887776 33  999999999985331   1222233  57899


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhh
Q 013228           87 FVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRP  166 (447)
Q Consensus        87 L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  166 (447)
                      ++..+.+....+|..|..++..+...-+...-    ...++.++..|.....+..+..++.++..++...+.........
T Consensus       100 ~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~  175 (986)
T 2iw3_A          100 ICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPE  175 (986)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             HHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccc
Confidence            99998888899999988888887743322211    22488999999656678999999999999997654444445588


Q ss_pred             hHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHH
Q 013228          167 ALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCI  246 (447)
Q Consensus       167 ~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~  246 (447)
                      ++|.+...+.+..++|...+..++..++..-++. . +  ...+|.|++.+.+++.  ...++..|+..+.-.......+
T Consensus       176 ~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~-d-~--~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l  249 (986)
T 2iw3_A          176 LIPVLSETMWDTKKEVKAAATAAMTKATETVDNK-D-I--ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATL  249 (986)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCT-T-T--GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHH
T ss_pred             hhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCc-c-h--hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhH
Confidence            9999999999999999999988888777422211 0 0  1568999999988744  4455555555443332211111


Q ss_pred             HhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHcCChHHHHHHHhc-CchhHHHHHHHHHHHhc
Q 013228          247 INCGALPYLLGLLIHNHKKSIKTDACWTISNITA--GNSEHIQAVIDAGLIGPLVNLLQN-AEFDIKNWAARAISNAT  321 (447)
Q Consensus       247 ~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~--~~~~~~~~l~~~~~~~~L~~~l~~-~~~~v~~~a~~aL~~l~  321 (447)
                        +-.+|.|.+-|... ...+++.++-++.|+|.  .+|.....++.. ++|.+-..... .+|++|..|..++..+.
T Consensus       250 --~~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~-l~p~~~~~~~~~~~pe~r~~~~~a~~~l~  323 (986)
T 2iw3_A          250 --SIMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFLGK-LLPGLKSNFATIADPEAREVTLRALKTLR  323 (986)
T ss_dssp             --HHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHHTT-THHHHHHHTTTCCSHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhhhh-hhhHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence              12467788888777 88899999999999998  677766666554 77877776663 68999999988888774

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.60  E-value=1.2e-08  Score=78.39  Aligned_cols=121  Identities=17%  Similarity=0.098  Sum_probs=93.0

Q ss_pred             cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHH
Q 013228           38 FGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCR  117 (447)
Q Consensus        38 ~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~  117 (447)
                      ...++.++.+|++++ +.+|..|+++|+.+..            ..++.|+.++.++++.+|..++++|+++..  +   
T Consensus        11 ~~~~~~l~~~L~~~~-~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~---   72 (131)
T 1te4_A           11 SSGLVPRGSHMADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---   72 (131)
T ss_dssp             ----------CCSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---
T ss_pred             cccHHHHHHHhcCCC-HHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H---
Confidence            457888999999988 8999999999887643            126889999999999999999999999863  1   


Q ss_pred             HHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHh
Q 013228          118 DLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYL  193 (447)
Q Consensus       118 ~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l  193 (447)
                            ..++.++..+ .++++.++..++++|..+..          ...++.|..+++++++.++..++++|..+
T Consensus        73 ------~a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           73 ------RAVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             ------HHHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             ------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence                  1377888888 77889999999999998862          45788999999999999999999988653

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.56  E-value=5e-05  Score=69.52  Aligned_cols=325  Identities=13%  Similarity=0.109  Sum_probs=194.6

Q ss_pred             ccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh---hhHHHHHhCCCh-HHHHH-hhCCCCHHHHHHHHHHHHHhhc
Q 013228           37 PFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTS---EDTKVVIDHGAV-PIFVK-LLASPSDDIREQAVCALGNVAA  111 (447)
Q Consensus        37 ~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~~~i-~~L~~-ll~~~~~~i~~~a~~~L~~l~~  111 (447)
                      +..++..++++|+....+++....+..+..+...++   .....+.+..-. ..+.. ++..+++-....+..++..++.
T Consensus        75 ~~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~  154 (480)
T 1ho8_A           75 NGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQ  154 (480)
T ss_dssp             SSTTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTS
T ss_pred             CchHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence            345788999999876558888888888998888665   433444443322 22332 3333445555666666666653


Q ss_pred             CChhHHHHHHhcCCHH--HHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhH--hhhHHHHHHhhcc----------
Q 013228          112 DSARCRDLVLSEEALI--PLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQV--RPALPALAQLVHS----------  177 (447)
Q Consensus       112 ~~~~~~~~~~~~~~l~--~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~l~~l~~ll~~----------  177 (447)
                      ..+...+.+.  ..+.  -++..|....+...+..++.+|..+.+....+.....  ...+|.++..++.          
T Consensus       155 ~~~~~~~~l~--~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~  232 (480)
T 1ho8_A          155 NGLHNVKLVE--KLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRI  232 (480)
T ss_dssp             TTTCCHHHHH--HHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------
T ss_pred             cCCccHhHHH--HHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhcccccccc
Confidence            3322111110  0122  3455553322334455678888888776522222211  2345666543331          


Q ss_pred             -----C--ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcH--HHHHHhcC-CCCchhHhHHHHHHHHhhcCCh----hhH
Q 013228          178 -----N--DKEVMTDACRALFYLSEGTNDEIQAVIEAGVC--PRLVELLG-HPSPSVLTRALQTVVNIAAGDD----FQT  243 (447)
Q Consensus       178 -----~--~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~--~~L~~lL~-~~~~~v~~~a~~~l~~l~~~~~----~~~  243 (447)
                           +  ...++..++.+++-++..+. ..+.+...++.  +.|+..++ +..+.+.+-++.++.|+....+    ...
T Consensus       233 ~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~  311 (480)
T 1ho8_A          233 VATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVI  311 (480)
T ss_dssp             ------CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHH
T ss_pred             ccccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHH
Confidence                 1  25678999999999986544 44555555543  45666664 4678899999999999997652    112


Q ss_pred             H-HHHhcCChHHHHHhhccC--CchhHHHHHHHHHHHHh---------------------cCCHHHH-HHHHH-------
Q 013228          244 Q-CIINCGALPYLLGLLIHN--HKKSIKTDACWTISNIT---------------------AGNSEHI-QAVID-------  291 (447)
Q Consensus       244 ~-~~~~~~~l~~l~~~l~~~--~~~~v~~~a~~~l~nl~---------------------~~~~~~~-~~l~~-------  291 (447)
                      . .++..+++ .++..|...  .|+++....-.....|-                     .-+|-+. ..+..       
T Consensus       312 ~~~~~~~~~l-~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~  390 (480)
T 1ho8_A          312 KQLLLLGNAL-PTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFK  390 (480)
T ss_dssp             HHHHHHHCHH-HHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGS
T ss_pred             HHHHHHccch-HHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHH
Confidence            2 23333444 455555432  15555443322221111                     1011111 12221       


Q ss_pred             ---cCChHHHHHHHhc----------CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHH
Q 013228          292 ---AGLIGPLVNLLQN----------AEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLK  358 (447)
Q Consensus       292 ---~~~~~~L~~~l~~----------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~  358 (447)
                         ..++..|+++|.+          .|+.+..-||.=++.++.. -|+.+..+.+.|+-+.+++++.++|++++..|+.
T Consensus       391 e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~-~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~  469 (480)
T 1ho8_A          391 KDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVEL-LPESIDVLDKTGGKADIMELLNHSDSRVKYEALK  469 (480)
T ss_dssp             SGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHH-CTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHH
T ss_pred             hcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHH-CcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHH
Confidence               1247889999973          3688888999999999987 4667777777899999999999999999999999


Q ss_pred             HHHHHHHh
Q 013228          359 GLEKILKV  366 (447)
Q Consensus       359 ~l~~l~~~  366 (447)
                      ++..++..
T Consensus       470 avQklm~~  477 (480)
T 1ho8_A          470 ATQAIIGY  477 (480)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998753

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.51  E-value=2.1e-08  Score=77.06  Aligned_cols=120  Identities=18%  Similarity=0.158  Sum_probs=91.2

Q ss_pred             hCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHH
Q 013228          207 AGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHI  286 (447)
Q Consensus       207 ~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~  286 (447)
                      ...++.+..+|.++++.+|..|+++|+.+..  +          .++.|+..+.++ ++.+|..|+++|+++..  +.  
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~--~----------~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~--~~--   73 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD--E----------AFEPLLESLSNE-DWRIRGAAAWIIGNFQD--ER--   73 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSS--T----------THHHHHHGGGCS-CHHHHHHHHHHHGGGCS--HH--
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc--h----------HHHHHHHHHcCC-CHHHHHHHHHHHHhcCC--HH--
Confidence            3567889999999999999999998876532  1          257889999988 99999999999999843  22  


Q ss_pred             HHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHH
Q 013228          287 QAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEK  362 (447)
Q Consensus       287 ~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~  362 (447)
                             .++.|+..+.++++.+|..|+++|+++..   +         ..++.|..+++++++.++..+..+|.+
T Consensus        74 -------a~~~L~~~L~d~~~~VR~~A~~aL~~~~~---~---------~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           74 -------AVEPLIKLLEDDSGFVRSGAARSLEQIGG---E---------RVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             -------HHHHHHHHHHHCCTHHHHHHHHHHHHHCS---H---------HHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             -------HHHHHHHHHcCCCHHHHHHHHHHHHHhCc---H---------HHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence                   47888899999999999999999999863   2         247788889999999999999888764

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.48  E-value=9.5e-05  Score=76.75  Aligned_cols=338  Identities=10%  Similarity=0.039  Sum_probs=192.4

Q ss_pred             cccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh------hhHHH
Q 013228            4 GVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTS------EDTKV   77 (447)
Q Consensus         4 ~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~------~~~~~   77 (447)
                      .+.+++..++...+.++..++...-+..   .  .++++.|++++++++ +..+..++.++..++....      +.+..
T Consensus        93 ~l~~~~~~ir~~l~~~ia~ia~~d~p~~---W--p~ll~~L~~~l~s~~-~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~  166 (960)
T 1wa5_C           93 LMISLPNNLQVQIGEAISSIADSDFPDR---W--PTLLSDLASRLSNDD-MVTNKGVLTVAHSIFKRWRPLFRSDELFLE  166 (960)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHHHHHSTTT---C--TTHHHHHHTTCCSSC-TTHHHHHHHHHHHHHGGGTTSCCCHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHhhCccc---h--hHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHhhcChHHHHH
Confidence            3444557788888888888887631211   1  358999999998887 7888999999999987321      22221


Q ss_pred             H---HhCCChHHHHH-------hhCCCCH---------HHHHHHHHHHHHhhc-CChhH-HHHHHhcCCHHHHHHHhccc
Q 013228           78 V---IDHGAVPIFVK-------LLASPSD---------DIREQAVCALGNVAA-DSARC-RDLVLSEEALIPLLTQLNKH  136 (447)
Q Consensus        78 ~---~~~~~i~~L~~-------ll~~~~~---------~i~~~a~~~L~~l~~-~~~~~-~~~~~~~~~l~~l~~~l~~~  136 (447)
                      +   +. ...+.++.       .+.++..         ++...++.++..+.. +.+.. .+.+  ...++.+.+.+...
T Consensus       167 l~~~l~-~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~--~~~~~~~~~~l~~~  243 (960)
T 1wa5_C          167 IKLVLD-VFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNI--QVGMGIFHKYLSYS  243 (960)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTH--HHHHHHHHHHHSCC
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH--HHHHHHHHHHHcCC
Confidence            1   11 12333333       2443211         233446667766652 22221 1111  11233444444221


Q ss_pred             -----cc---------hhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhc-----cCChhHHHHHHHHHHHhccCC
Q 013228          137 -----AK---------LSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVH-----SNDKEVMTDACRALFYLSEGT  197 (447)
Q Consensus       137 -----~~---------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~-----~~~~~v~~~al~~l~~l~~~~  197 (447)
                           .+         ..++..++.++..+....+..-......+++.....+.     ..++.++..++..+..++...
T Consensus       244 ~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~  323 (960)
T 1wa5_C          244 NPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIP  323 (960)
T ss_dssp             SCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSH
T ss_pred             CCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcH
Confidence                 11         24667778888777654322111223455666666664     346788888999888877532


Q ss_pred             cHHHHHHHH-hC----cH-HHHHHhcC-----------------------CCCchhHhHHHHHHHHhhcCChhhHHHHHh
Q 013228          198 NDEIQAVIE-AG----VC-PRLVELLG-----------------------HPSPSVLTRALQTVVNIAAGDDFQTQCIIN  248 (447)
Q Consensus       198 ~~~~~~~~~-~~----~~-~~L~~lL~-----------------------~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~  248 (447)
                      ...  .+.. .+    ++ +.++..+.                       +.....|..|..+|..++...+..   +..
T Consensus       324 ~~~--~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~---v~~  398 (960)
T 1wa5_C          324 KYF--EIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVL---VTN  398 (960)
T ss_dssp             HHH--GGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHH---HHH
T ss_pred             hHH--HHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchh---HHH
Confidence            211  1110 01    22 22233321                       111256778888888888655421   211


Q ss_pred             cCChHHHHHhhc------cCCchhHHHHHHHHHHHHhcCC--HH----------HHHHHHHcCChHHHHHHHhcC---ch
Q 013228          249 CGALPYLLGLLI------HNHKKSIKTDACWTISNITAGN--SE----------HIQAVIDAGLIGPLVNLLQNA---EF  307 (447)
Q Consensus       249 ~~~l~~l~~~l~------~~~~~~v~~~a~~~l~nl~~~~--~~----------~~~~l~~~~~~~~L~~~l~~~---~~  307 (447)
                       .+++.+...+.      +. +...|..|..+++.++.+.  ..          ....++..-++    ..+.++   ++
T Consensus       399 -~~l~~i~~~l~~~~~~~~~-~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~----p~l~~~~~~~p  472 (960)
T 1wa5_C          399 -IFLAHMKGFVDQYMSDPSK-NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIA----PDLTSNNIPHI  472 (960)
T ss_dssp             -HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTH----HHHHCSSCSCH
T ss_pred             -HHHHHHHHHHHHhccCcch-hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhH----HHhcCCCCCCc
Confidence             23445555554      44 6788999999999997531  10          12222211133    334555   88


Q ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 013228          308 DIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKV  366 (447)
Q Consensus       308 ~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~  366 (447)
                      .+|..|+|+++.++..-.++....     +++.+++.+.++++.++..|+.+|.++++.
T Consensus       473 ~vr~~a~~~lg~~~~~~~~~~l~~-----~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~  526 (960)
T 1wa5_C          473 ILRVDAIKYIYTFRNQLTKAQLIE-----LMPILATFLQTDEYVVYTYAAITIEKILTI  526 (960)
T ss_dssp             HHHHHHHHHHHHTGGGSCHHHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             eehHHHHHHHHHHHhhCCHHHHHH-----HHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence            999999999999987644443333     578888888888899999999999999874

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.44  E-value=6.7e-06  Score=71.40  Aligned_cols=188  Identities=13%  Similarity=0.096  Sum_probs=142.3

Q ss_pred             HHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH-H
Q 013228          213 LVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVI-D  291 (447)
Q Consensus       213 L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~-~  291 (447)
                      ++..|.+.+.+.++.++.-|..+...+......++..+++..|+++.... +...+..+..++.++... .....-++ .
T Consensus       123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~-v~Gm~gvvs~  200 (339)
T 3dad_A          123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLF-VDGMLGVVAH  200 (339)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTS-HHHHHHHHHC
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhc-cccccchhCC
Confidence            44445566778888999999986666777888999999999999999998 999999999999999765 34454555 3


Q ss_pred             cCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHH--------Hc--CChHHHHhhcc---CCCHHHHHHHHH
Q 013228          292 AGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLV--------RE--GCIKPLCDLLL---CADPEIVTVFLK  358 (447)
Q Consensus       292 ~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~--------~~--~~l~~L~~ll~---~~~~~~~~~a~~  358 (447)
                      ..++..+..++.+.+..+.+.|+..|..++...+. ....+.        ..  ..+..|+..|.   +.|.+++..++.
T Consensus       201 ~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~-~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt  279 (339)
T 3dad_A          201 SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSEN-NAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT  279 (339)
T ss_dssp             HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcc-cchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence            45788899999988899999999999998876421 111111        11  24888999997   678999999999


Q ss_pred             HHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCC--CHHHHHH
Q 013228          359 GLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHD--NDEIHEK  410 (447)
Q Consensus       359 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~--~~~v~~~  410 (447)
                      .+..++...+.....       ..+...+.+.|.-..+...+...  ++++++.
T Consensus       280 LIN~lL~~apd~d~~-------~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q  326 (339)
T 3dad_A          280 LINKTLAALPDQDSF-------YDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ  326 (339)
T ss_dssp             HHHHHHHHCSSHHHH-------HHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred             HHHHHHhcCCChhHH-------HHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence            999999876543321       12577888888888888877665  5666543

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.40  E-value=0.00012  Score=75.90  Aligned_cols=381  Identities=9%  Similarity=0.067  Sum_probs=210.1

Q ss_pred             CCHHHHHHHHHHHHHHHccCCC-----CchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-ChhhHHHHHhC
Q 013228            8 DDNNMQLEATTHIRKLLSNARS-----APTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSG-TSEDTKVVIDH   81 (447)
Q Consensus         8 ~~~~~~~~a~~~l~~l~~~~~~-----~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~   81 (447)
                      .+..+|..|+..|.+.....-.     .....=.+..+=..+++.+.++. ..+|..++.++..++.. .++..     .
T Consensus        49 ~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~~~-~~ir~~l~~~ia~ia~~d~p~~W-----p  122 (960)
T 1wa5_C           49 LPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLP-NNLQVQIGEAISSIADSDFPDRW-----P  122 (960)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHSTTTC-----T
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHhhCccch-----h
Confidence            4578999999999998764211     01111011122234555555566 79999999999998862 11111     2


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC------hhHHHHHH--hcCCHHHHHHH-------hcccc-c-------
Q 013228           82 GAVPIFVKLLASPSDDIREQAVCALGNVAADS------ARCRDLVL--SEEALIPLLTQ-------LNKHA-K-------  138 (447)
Q Consensus        82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~------~~~~~~~~--~~~~l~~l~~~-------l~~~~-~-------  138 (447)
                      +.++.|++.+.++++..+..++.++..++...      +..+..+.  -....++++++       +.... +       
T Consensus       123 ~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~  202 (960)
T 1wa5_C          123 TLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNIL  202 (960)
T ss_dssp             THHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence            57888999998888888999999999998632      12221110  01123433333       32221 1       


Q ss_pred             hhHHHHHHHHHHHhcCCC-CCCChhhHhhhHHHHHHhhccC------C---------hhHHHHHHHHHHHhccCCcHHHH
Q 013228          139 LSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLVHSN------D---------KEVMTDACRALFYLSEGTNDEIQ  202 (447)
Q Consensus       139 ~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~l~~ll~~~------~---------~~v~~~al~~l~~l~~~~~~~~~  202 (447)
                      .++...++.+++.+.... +..........++.+..++...      +         ..++..++.++..+.........
T Consensus       203 ~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~  282 (960)
T 1wa5_C          203 FDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFG  282 (960)
T ss_dssp             HHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            123344666666665433 2211112244556666665421      1         24677888888887754444332


Q ss_pred             HHHHhCcHHHHHHhcC-----CCCchhHhHHHHHHHHhhcCChhhHHHHHh-cCChH-----HHHHhhcc----------
Q 013228          203 AVIEAGVCPRLVELLG-----HPSPSVLTRALQTVVNIAAGDDFQTQCIIN-CGALP-----YLLGLLIH----------  261 (447)
Q Consensus       203 ~~~~~~~~~~L~~lL~-----~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~l~-----~l~~~l~~----------  261 (447)
                      ... ..+++..+..+.     ..++.++..++..+..++..... .. ++. ...++     .++..+.-          
T Consensus       283 ~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~-~~-~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~  359 (960)
T 1wa5_C          283 PMI-NEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKY-FE-IFNNESAMNNITEQIILPNVTLREEDVELFED  359 (960)
T ss_dssp             HHH-HHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHH-HG-GGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTT
T ss_pred             HHH-HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhH-HH-HHcCchHHHHHHHHHhHHhcCCCHHHHHHHhc
Confidence            222 234555555553     34567888899999888753221 11 111 01222     22222210          


Q ss_pred             ------------CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh------cCchhHHHHHHHHHHHhcCC
Q 013228          262 ------------NHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQ------NAEFDIKNWAARAISNATFG  323 (447)
Q Consensus       262 ------------~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~------~~~~~v~~~a~~aL~~l~~~  323 (447)
                                  ......|..|..+|..++...++.   ++.. +++.+...+.      +.++..|+.|+.+++.++..
T Consensus       360 dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~---v~~~-~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~  435 (960)
T 1wa5_C          360 DPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVL---VTNI-FLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAIN  435 (960)
T ss_dssp             CHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHH---HHHH-HHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBS
T ss_pred             CHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchh---HHHH-HHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHH
Confidence                        102256777778888877644321   1111 3344444454      45678889999999999753


Q ss_pred             CC-HH----------HHHHHHHcCChHHHHhhccCC---CHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHH
Q 013228          324 GT-HE----------QIKYLVREGCIKPLCDLLLCA---DPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEE  389 (447)
Q Consensus       324 ~~-~~----------~~~~l~~~~~l~~L~~ll~~~---~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~  389 (447)
                      +. ..          ....+..    ..+...+.++   ++.++..+++++..+...-..               +.+  
T Consensus       436 ~~~~~~~~~~~~~~~~l~~~l~----~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~---------------~~l--  494 (960)
T 1wa5_C          436 GNITNAGVSSTNNLLNVVDFFT----KEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK---------------AQL--  494 (960)
T ss_dssp             SCCBTTBCCCBCTTCCHHHHHH----HHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH---------------HHH--
T ss_pred             hccccCCcccccccccHHHHHH----HHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCH---------------HHH--
Confidence            21 00          1222111    1222333444   789999999999998764211               111  


Q ss_pred             hchHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 013228          390 AEGLEKIENLRSHDNDEIHEKSVKILETYWCGR  422 (447)
Q Consensus       390 ~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~  422 (447)
                      ...++.+.+.+.++++.|+..|..++.++++..
T Consensus       495 ~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~  527 (960)
T 1wa5_C          495 IELMPILATFLQTDEYVVYTYAAITIEKILTIR  527 (960)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCB
T ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcc
Confidence            223455555566778999999999999988743

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.36  E-value=9.4e-05  Score=74.75  Aligned_cols=298  Identities=14%  Similarity=0.118  Sum_probs=200.0

Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCC--CChhhH
Q 013228           87 FVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPK--PIFDQV  164 (447)
Q Consensus        87 L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~  164 (447)
                      +.+-+...+..-+..++..+..+.......  .....+.+..+...+....+.   +.|+.++..++.....  ......
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~~e~~~   93 (986)
T 2iw3_A           19 LFQKLSVATADNRHEIASEVASFLNGNIIE--HDVPEHFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPSVEPYI   93 (986)
T ss_dssp             HHHHHTTCCTTTHHHHHHHHHHHHTSSCSS--SSCCHHHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTTTHHHH
T ss_pred             HHhhccccchhHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCCcccch
Confidence            444344322333345555666654322111  011123456666666332233   8899999999966522  333344


Q ss_pred             hhhHHHHHHhhccCChhHHHHHHHHHHHhccCCc-HHHHHHHHhCcHHHHHHhcCC-CCchhHhHHHHHHHHhhcCChhh
Q 013228          165 RPALPALAQLVHSNDKEVMTDACRALFYLSEGTN-DEIQAVIEAGVCPRLVELLGH-PSPSVLTRALQTVVNIAAGDDFQ  242 (447)
Q Consensus       165 ~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~-~~~~~~~~~~~~~~L~~lL~~-~~~~v~~~a~~~l~~l~~~~~~~  242 (447)
                      -+.+|.++..+.+....|+..|-.++..+...-+ ...     ..++|.|+..|.+ ..|..+..|+.++..++...+.+
T Consensus        94 ~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~  168 (986)
T 2iw3_A           94 VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQ  168 (986)
T ss_dssp             HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHH
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHH
Confidence            5678888888888888999888777766664332 222     2467888888855 47999999999999999766644


Q ss_pred             HHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHh
Q 013228          243 TQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA--GNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNA  320 (447)
Q Consensus       243 ~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~--~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l  320 (447)
                      ...-+ ..++|.+...+.+. .++++..|..++..+|.  .+.+.      ..++|.|++.+..++.  ..++...|+.-
T Consensus       169 ~~~~~-~~~~p~~~~~~~d~-k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~p~~--~~~~~~~l~~~  238 (986)
T 2iw3_A          169 VALRM-PELIPVLSETMWDT-KKEVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIADPTE--VPETVHLLGAT  238 (986)
T ss_dssp             HHHHH-HHHHHHHHHHTTCS-SHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHCTTH--HHHHHHHHTTC
T ss_pred             HHHhc-cchhcchHhhcccC-cHHHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcChhh--hHHHHHHhhcC
Confidence            33222 35889999999988 99999999999999987  34331      3479999999987633  45566666554


Q ss_pred             cCCC--CHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHH
Q 013228          321 TFGG--THEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIEN  398 (447)
Q Consensus       321 ~~~~--~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~  398 (447)
                      +...  +......     .++.|.+-|......+...+.-++.|+++..++-..           ...|. ...++.+++
T Consensus       239 tfv~~v~~~~l~~-----~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~-----------~~~f~-~~l~p~~~~  301 (986)
T 2iw3_A          239 TFVAEVTPATLSI-----MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQV-----------IAPFL-GKLLPGLKS  301 (986)
T ss_dssp             CCCSCCCHHHHHH-----HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHH-----------HHHHH-TTTHHHHHH
T ss_pred             eeEeeecchhHHH-----HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHH-----------Hhhhh-hhhhhHHHH
Confidence            4432  2222333     377888888888888999999999999998665431           34444 455677777


Q ss_pred             H-hcCCCHHHHHHHHHHHHHhcCC
Q 013228          399 L-RSHDNDEIHEKSVKILETYWCG  421 (447)
Q Consensus       399 l-~~~~~~~v~~~a~~~l~~~~~~  421 (447)
                      . ..-.+|++++.|.+.+..+...
T Consensus       302 ~~~~~~~pe~r~~~~~a~~~l~~~  325 (986)
T 2iw3_A          302 NFATIADPEAREVTLRALKTLRRV  325 (986)
T ss_dssp             HTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred             HhhccCCHHHHHHHHHHHHHHHHh
Confidence            5 4567899999999988888653

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.32  E-value=0.0002  Score=74.57  Aligned_cols=394  Identities=10%  Similarity=0.042  Sum_probs=204.6

Q ss_pred             CCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHh-------hcCCCC--HHHHHHHHHHHHHHcCCChhhH---
Q 013228            8 DDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEF-------LMREDY--PQLQFEAAWALKNIVSGTSEDT---   75 (447)
Q Consensus         8 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~l-------l~~~~~--~~v~~~a~~~L~~l~~~~~~~~---   75 (447)
                      ++++.+..|+.++..+............+. .+++.++.+       +..++.  ++.....++.+..++.......   
T Consensus       256 ~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~  334 (971)
T 2x1g_F          256 DENELAESCLKTMVNIIIQPDCHNYPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSG  334 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSGGGGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHcCccccccHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457888999999999998631111111111 133333332       223331  2667777777777764222211   


Q ss_pred             ---------HHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhcC---------ChhHHHHHHh--cCCHHHHH
Q 013228           76 ---------KVVIDHGAVPIFVKLLAS-----PSDDIREQAVCALGNVAAD---------SARCRDLVLS--EEALIPLL  130 (447)
Q Consensus        76 ---------~~~~~~~~i~~L~~ll~~-----~~~~i~~~a~~~L~~l~~~---------~~~~~~~~~~--~~~l~~l~  130 (447)
                               ..+.  ..++.++.+...     .++++...+++.+..++..         .+.....+..  ...++.++
T Consensus       335 ~~~~~~~~~~~l~--~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~  412 (971)
T 2x1g_F          335 ITSADPELSILVH--RIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILV  412 (971)
T ss_dssp             HHTCCHHHHHHHH--HHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHH
T ss_pred             hccCcccccHHHH--HHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHH
Confidence                     1111  345566665533     4788899999988887641         1111111110  12344444


Q ss_pred             HHhccccc--------------hhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhcc-----CChhHHHHHHHHHH
Q 013228          131 TQLNKHAK--------------LSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHS-----NDKEVMTDACRALF  191 (447)
Q Consensus       131 ~~l~~~~~--------------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~-----~~~~v~~~al~~l~  191 (447)
                      ..+....+              .+.+..+..++..++...+   ......+++.+...+.+     .+...++.++.+++
T Consensus       413 ~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~  489 (971)
T 2x1g_F          413 RKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN---DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQ  489 (971)
T ss_dssp             HHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT---THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred             HHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH
Confidence            44422111              1345566777777775432   23334455555555544     57788999999999


Q ss_pred             HhccCCcHHHHHHHHhCcHHHHHHhcC-CCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHH
Q 013228          192 YLSEGTNDEIQAVIEAGVCPRLVELLG-HPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTD  270 (447)
Q Consensus       192 ~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~  270 (447)
                      .++..........+. .+++.+..+.. +.++.++..++++++.++..-....+.+  ..+++.++..+ +   +.++..
T Consensus       490 ~iae~~~~~~~~~l~-~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~~l~~~l-~---~~v~~~  562 (971)
T 2x1g_F          490 SVAEHFGGEEKRQIP-RLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAINLLVRGL-N---SSMSAQ  562 (971)
T ss_dssp             HTTTC------CHHH-HHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHHHHHHHH-H---SSCHHH
T ss_pred             HHHhhcChhhhHHHH-HHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHHHHHHHh-C---hHHHHH
Confidence            998765432211111 13342322222 3578999999999999875321111111  12455666666 2   578999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--chhHHHHHHHHHHHhcCCCC-HHHHHHHHHcCChHHHH----h
Q 013228          271 ACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNA--EFDIKNWAARAISNATFGGT-HEQIKYLVREGCIKPLC----D  343 (447)
Q Consensus       271 a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~--~~~v~~~a~~aL~~l~~~~~-~~~~~~l~~~~~l~~L~----~  343 (447)
                      |++++.+++..........++ .++..+..++..+  +.+.+..+..+++.++.... .+....+..  +++.+.    .
T Consensus       563 A~~al~~l~~~~~~~l~p~~~-~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~--ll~~l~~~l~~  639 (971)
T 2x1g_F          563 ATLGLKELCRDCQLQLKPYAD-PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDI--IVSPCFEELQA  639 (971)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccHH-HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHH--HHHHHHHHHHH
Confidence            999999999755444444333 3677777778763  57888899999998876422 222333222  233333    3


Q ss_pred             hccCC--CHHHHH---HHHHHHHHHHHhhhhhhhhhhhcc--cccHHHHHHHHhchHHHHHHHhc--CCCHHHHHHHHHH
Q 013228          344 LLLCA--DPEIVT---VFLKGLEKILKVGEAEKNMDIAIG--DVNQYAQLVEEAEGLEKIENLRS--HDNDEIHEKSVKI  414 (447)
Q Consensus       344 ll~~~--~~~~~~---~a~~~l~~l~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~l~~l~~--~~~~~v~~~a~~~  414 (447)
                      .+...  +++.+.   .+++.|..++..-...... ...+  ..+++...+  ...++.+..+..  ..++++.+.+.++
T Consensus       640 ~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~-~~~~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~v~e~~~~~  716 (971)
T 2x1g_F          640 ICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDE-QATDQPIVQPVLLVM--QRTMPIFKRIAEMWVEEIDVLEAACSA  716 (971)
T ss_dssp             HHTC---CHHHHHHHHHHHHHHHHHHHHHTC--------------CCHHHH--HTTHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCc-ccccccCCCchHHHH--HHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            33333  332233   3444455444422110000 0000  001111222  344565555543  2467888888888


Q ss_pred             HHHhcC
Q 013228          415 LETYWC  420 (447)
Q Consensus       415 l~~~~~  420 (447)
                      +.+...
T Consensus       717 ~~~~~~  722 (971)
T 2x1g_F          717 MKHAIT  722 (971)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887443

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.32  E-value=0.00023  Score=74.00  Aligned_cols=331  Identities=11%  Similarity=0.045  Sum_probs=178.6

Q ss_pred             HHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhc---------------C-CCCHHHHHHHHHHHHHHcCCCh--
Q 013228           11 NMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLM---------------R-EDYPQLQFEAAWALKNIVSGTS--   72 (447)
Q Consensus        11 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~---------------~-~~~~~v~~~a~~~L~~l~~~~~--   72 (447)
                      .++..++.++...+....-+ ..  .....++.+.. |.               + ++ ++++..|+.++..+....+  
T Consensus       204 ~~~~~al~~l~~~~~~~~ip-~~--~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~l~~i~~~~~~~  278 (971)
T 2x1g_F          204 SNMNRAVKCVGTWIKNIGYT-IE--GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADE-NELAESCLKTMVNIIIQPDCH  278 (971)
T ss_dssp             HHHHHHHHHHHHHHHHSCCC-GG--GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHH-HHHHHHHHHHHHHHHHCSGGG
T ss_pred             hHHHHHHHHHHHHHhhCCcC-cc--ccccHHHHHHh-hhhhhccccccccccccCcCC-cHHHHHHHHHHHHHHcCcccc
Confidence            67777888887766520011 11  33445666665 41               1 34 7899999999999987322  


Q ss_pred             hhHHHHHhCCChHHHHH-------hhCCCC---HHHHHHHHHHHHHhhcCChhH-HHHHH-----hc----CCHHHHHHH
Q 013228           73 EDTKVVIDHGAVPIFVK-------LLASPS---DDIREQAVCALGNVAADSARC-RDLVL-----SE----EALIPLLTQ  132 (447)
Q Consensus        73 ~~~~~~~~~~~i~~L~~-------ll~~~~---~~i~~~a~~~L~~l~~~~~~~-~~~~~-----~~----~~l~~l~~~  132 (447)
                      +....+ . .+++.++.       .+...+   .+.....++.+..++...... .+.+.     ..    ..++.++..
T Consensus       279 ~~~~~~-~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~  356 (971)
T 2x1g_F          279 NYPKTA-F-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHC  356 (971)
T ss_dssp             GCHHHH-H-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHH-H-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHH
Confidence            111111 1 12233332       123334   367777777777776432211 10000     01    123333433


Q ss_pred             hcc----ccchhHHHHHHHHHHHhcCCC--------CCCChh----hHhhhHHHHHHhhccCCh---------------h
Q 013228          133 LNK----HAKLSMLRIATWTLSNFCAGK--------PKPIFD----QVRPALPALAQLVHSNDK---------------E  181 (447)
Q Consensus       133 l~~----~~~~~~~~~a~~~L~~l~~~~--------~~~~~~----~~~~~l~~l~~ll~~~~~---------------~  181 (447)
                      ...    ..+.++...+++.+..++...        ......    ....+++.++..+..+++               .
T Consensus       357 ~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~  436 (971)
T 2x1g_F          357 TDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRC  436 (971)
T ss_dssp             HHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHH
T ss_pred             HcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHH
Confidence            312    246678888888887776411        011111    223445555544432211               3


Q ss_pred             HHHHHHHHHHHhccCCc-HHHHHHHHhCcHHHHHHhcC-----CCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHH
Q 013228          182 VMTDACRALFYLSEGTN-DEIQAVIEAGVCPRLVELLG-----HPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYL  255 (447)
Q Consensus       182 v~~~al~~l~~l~~~~~-~~~~~~~~~~~~~~L~~lL~-----~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l  255 (447)
                      .|..+..++..++.... .....     +++.+...+.     ..++..+..++.+++.++.+......     ..++.+
T Consensus       437 ~R~~~~~~l~~~~~~~~~~~l~~-----~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~-----~~l~~l  506 (971)
T 2x1g_F          437 YRQDISDTFMYCYDVLNDYILEI-----LAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK-----RQIPRL  506 (971)
T ss_dssp             HHHHHHHHHHHHHTTCTTHHHHH-----HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh-----HHHHHH
Confidence            45556666666654333 21111     1233333332     26788999999999999876553221     223333


Q ss_pred             HHhh---c--cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHH
Q 013228          256 LGLL---I--HNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIK  330 (447)
Q Consensus       256 ~~~l---~--~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~  330 (447)
                      +.++   .  ++ ++.+|..++|+++.++..-....+.+ . .+++.++..+.   +.++..|++++.+++.........
T Consensus       507 ~~~l~~l~~~d~-~~~vr~~a~~~l~~~~~~l~~~~~~l-~-~vl~~l~~~l~---~~v~~~A~~al~~l~~~~~~~l~p  580 (971)
T 2x1g_F          507 MRVLAEIPYEKL-NVKLLGTALETMGSYCNWLMENPAYI-P-PAINLLVRGLN---SSMSAQATLGLKELCRDCQLQLKP  580 (971)
T ss_dssp             HHHHHHSCTTTS-CHHHHHHHHHHHHHTHHHHC----CH-H-HHHHHHHHHHH---SSCHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHhcCcccc-CHHHHHHHHHHHHHHHHHHhcCHHHH-H-HHHHHHHHHhC---hHHHHHHHHHHHHHHHHHHHhccc
Confidence            3332   2  34 78999999999999875211111111 1 25666666662   789999999999999754333222


Q ss_pred             HHHHcCChHHHHhhccC--CCHHHHHHHHHHHHHHHHh
Q 013228          331 YLVREGCIKPLCDLLLC--ADPEIVTVFLKGLEKILKV  366 (447)
Q Consensus       331 ~l~~~~~l~~L~~ll~~--~~~~~~~~a~~~l~~l~~~  366 (447)
                      ++  ..++..+..++..  -+.+.+..+++++..++..
T Consensus       581 ~~--~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~  616 (971)
T 2x1g_F          581 YA--DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL  616 (971)
T ss_dssp             HH--HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred             cH--HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence            22  2356677777776  3568888999999999875

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.28  E-value=2.6e-05  Score=67.77  Aligned_cols=186  Identities=12%  Similarity=0.077  Sum_probs=136.8

Q ss_pred             HHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHh
Q 013228          169 PALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIIN  248 (447)
Q Consensus       169 ~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~  248 (447)
                      ..++.-|.+.+.+.+..++..|..+...+......++..+++..|+......+...+..+++++.++..+.......+-.
T Consensus       121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~  200 (339)
T 3dad_A          121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAH  200 (339)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHC
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCC
Confidence            34556666778888999999999866566667788999999999999999999999999999999999864433222224


Q ss_pred             cCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH----------cCChHHHHHHHh---cCchhHHHHHHH
Q 013228          249 CGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVID----------AGLIGPLVNLLQ---NAEFDIKNWAAR  315 (447)
Q Consensus       249 ~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~----------~~~~~~L~~~l~---~~~~~v~~~a~~  315 (447)
                      ..++..+..++.+. ...+.+.|...|..++..++.....+.+          ...++.++.+|+   +.|.+++.+|+.
T Consensus       201 ~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt  279 (339)
T 3dad_A          201 SDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT  279 (339)
T ss_dssp             HHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence            56788889999876 8999999999999988755433332221          124888999997   678999999998


Q ss_pred             HHHHhcCCCC-HH----HHHHHHHcCChHHHHhhccCC--CHHHHHH
Q 013228          316 AISNATFGGT-HE----QIKYLVREGCIKPLCDLLLCA--DPEIVTV  355 (447)
Q Consensus       316 aL~~l~~~~~-~~----~~~~l~~~~~l~~L~~ll~~~--~~~~~~~  355 (447)
                      .|..+..... .+    ....+.+.|.-..+.+.++..  +++++..
T Consensus       280 LIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q  326 (339)
T 3dad_A          280 LINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ  326 (339)
T ss_dssp             HHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred             HHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence            8776665433 33    233444566556677767764  6666655

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=98.25  E-value=0.00044  Score=71.44  Aligned_cols=336  Identities=11%  Similarity=0.081  Sum_probs=184.7

Q ss_pred             CCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHH-HhhcCCCCHHHHHHHHHHHHHHcCCC---h--hhHHHHHhC
Q 013228            8 DDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFV-EFLMREDYPQLQFEAAWALKNIVSGT---S--EDTKVVIDH   81 (447)
Q Consensus         8 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~-~ll~~~~~~~v~~~a~~~L~~l~~~~---~--~~~~~~~~~   81 (447)
                      .++++...++.++....+-   -....+++.+.++.+. .++.  + ++++..|+.+|..+....   +  +....+...
T Consensus       207 ~~~~l~~~~L~~l~s~l~W---I~i~~i~~~~ll~~l~~~~L~--~-~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~l  280 (1023)
T 4hat_C          207 ASSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLF  280 (1023)
T ss_dssp             SSCHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHh---CCHHHhcchhHHHHHHHHHcC--C-HHHHHHHHHHHHHHHccccCCchHHHHHHHHHH
Confidence            3456666677777777653   3356677888999999 8874  4 789999999999998622   2  122111110


Q ss_pred             --CChHHH--------------HHhhCCCCHHHHHHHHHHHHHhhc-------CChhHHHHHHhcCCHHHHHHHhccccc
Q 013228           82 --GAVPIF--------------VKLLASPSDDIREQAVCALGNVAA-------DSARCRDLVLSEEALIPLLTQLNKHAK  138 (447)
Q Consensus        82 --~~i~~L--------------~~ll~~~~~~i~~~a~~~L~~l~~-------~~~~~~~~~~~~~~l~~l~~~l~~~~~  138 (447)
                        +.++.+              ...-...+.+..+..++.+..+..       ..+..+..+.  .++..++..- ..++
T Consensus       281 f~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~~Ll~~~-~~~d  357 (1023)
T 4hat_C          281 FQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLS-KIEE  357 (1023)
T ss_dssp             HHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHHHHHHHT-TSSC
T ss_pred             HHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHHHHHHhh-CCCc
Confidence              111111              111122356666666666655542       1122122211  1122333332 4557


Q ss_pred             hhHHHHHHHHHHHhcCCCC--CCChhhH----hhhHHHHHHhhccCC--------------------hh-HHH----HHH
Q 013228          139 LSMLRIATWTLSNFCAGKP--KPIFDQV----RPALPALAQLVHSND--------------------KE-VMT----DAC  187 (447)
Q Consensus       139 ~~~~~~a~~~L~~l~~~~~--~~~~~~~----~~~l~~l~~ll~~~~--------------------~~-v~~----~al  187 (447)
                      .++...++..-..++.+-.  .......    ..+++.+++-+..+.                    ++ ...    .++
T Consensus       358 ~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L  437 (1023)
T 4hat_C          358 RELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVL  437 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHH
Confidence            7777776665555553221  1122222    344445554444322                    00 111    222


Q ss_pred             HHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC--CCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhcc----
Q 013228          188 RALFYLSEGTNDEIQAVIEAGVCPRLVELLGH--PSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIH----  261 (447)
Q Consensus       188 ~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~----  261 (447)
                      ..+.++..  ++..+     -.++.+...+.+  .++..+..++++++.++.+.......-.-..+++.|+.++.+    
T Consensus       438 ~~l~~l~~--~~~~~-----~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~  510 (1023)
T 4hat_C          438 VYLTHLNV--IDTEE-----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGK  510 (1023)
T ss_dssp             HHHHHHCH--HHHHH-----HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSH
T ss_pred             HHHhccCH--HHHHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccC
Confidence            23333221  11111     123444444443  679999999999999997765432222223577788888764    


Q ss_pred             -CCchhHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHH---
Q 013228          262 -NHKKSIKTDACWTISNITA---GNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVR---  334 (447)
Q Consensus       262 -~~~~~v~~~a~~~l~nl~~---~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~---  334 (447)
                       + ...++..++|+++..+.   ..++....     ++..|++.+..+++.++..|++++.+++..+.    ..+..   
T Consensus       511 d~-k~~v~~t~~~~lGry~~wl~~~~~~L~~-----vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~----~~l~~~~~  580 (1023)
T 4hat_C          511 DN-KAVVASDIMYVVGQYPRFLKAHWNFLRT-----VILKLFEFMHETHEGVQDMACDTFIKIVQKCK----YHFVIQQP  580 (1023)
T ss_dssp             HH-HHHHHHHHHHHHHTCHHHHHHCHHHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHT----HHHHSCCT
T ss_pred             cc-hHHHHHHHHHHHHHHHHHHhccHHHHHH-----HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH----HHhhccCC
Confidence             2 44566788899998765   23332222     45556666766778999999999999987432    22221   


Q ss_pred             -------cCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 013228          335 -------EGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEA  369 (447)
Q Consensus       335 -------~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~  369 (447)
                             ..++..+......-+++-+..+.+++..++...+.
T Consensus       581 ~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~  622 (1023)
T 4hat_C          581 RESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERS  622 (1023)
T ss_dssp             TCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCS
T ss_pred             CCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC
Confidence                   01233344444455667778889999999987543

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=98.04  E-value=0.0015  Score=67.97  Aligned_cols=338  Identities=12%  Similarity=0.084  Sum_probs=186.2

Q ss_pred             cCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhh---CCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCC
Q 013228           49 MREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLL---ASPSDDIREQAVCALGNVAADSARCRDLVLSEEA  125 (447)
Q Consensus        49 ~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll---~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~  125 (447)
                      .+.+ ...++.++++++.++.+-.+..     ...++.++..+   .++++.++..++|+++.++..-....+.  -..+
T Consensus       459 ~~~~-w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~--l~~v  530 (963)
T 2x19_B          459 EPYS-WQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVM--INSV  530 (963)
T ss_dssp             CSCC-HHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHH--HTTT
T ss_pred             CCCc-hHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHH--HHHH
Confidence            4445 7889999999999997533211     12334444433   3357889999999999998532211122  2357


Q ss_pred             HHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccC--ChhHHHHHHHHHHHhccCCc-HHHH
Q 013228          126 LIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSN--DKEVMTDACRALFYLSEGTN-DEIQ  202 (447)
Q Consensus       126 l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~--~~~v~~~al~~l~~l~~~~~-~~~~  202 (447)
                      ++.++..+ .+  +.++..|++++..++......-......++..+..++...  +...+..+..+++.++...+ +...
T Consensus       531 l~~l~~~l-~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~  607 (963)
T 2x19_B          531 LPLVLHAL-GN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL  607 (963)
T ss_dssp             HHHHHHHT-TC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHh-CC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence            88888888 33  6889999999999997543222233466677777777753  56788888999998885443 3222


Q ss_pred             HHHHhCcHHHHHHhc----CC-CCchhHh---HHHHHHHHhhcCCh----------------------hhHHHHHhcCCh
Q 013228          203 AVIEAGVCPRLVELL----GH-PSPSVLT---RALQTVVNIAAGDD----------------------FQTQCIINCGAL  252 (447)
Q Consensus       203 ~~~~~~~~~~L~~lL----~~-~~~~v~~---~a~~~l~~l~~~~~----------------------~~~~~~~~~~~l  252 (447)
                      ..++ .+++.+...+    .. .+++.+.   ..+.+++.+...-.                      ..... +...++
T Consensus       608 ~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  685 (963)
T 2x19_B          608 KNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVV-VLQQVF  685 (963)
T ss_dssp             HHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHH-HHHHHH
T ss_pred             HHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHH-HHHHHH
Confidence            2222 2444444333    22 2344433   34445544432110                      00111 122355


Q ss_pred             HHHHHhhcc-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH----hc-CchhHHHHHHHHHHHhcC--CC
Q 013228          253 PYLLGLLIH-NHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLL----QN-AEFDIKNWAARAISNATF--GG  324 (447)
Q Consensus       253 ~~l~~~l~~-~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l----~~-~~~~v~~~a~~aL~~l~~--~~  324 (447)
                      +.+..++.. ..+..+.+.++.++..++..-.+..     ..++|.++..+    .. +.+.    .++.+..+..  ..
T Consensus       686 ~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~-----~~~l~~~~~~l~~~~~~~~~~~----~l~l~~~li~~f~~  756 (963)
T 2x19_B          686 QLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDF-----APMVPQLCEMLGRMYSTIPQAS----ALDLTRQLVHIFAH  756 (963)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTT-----GGGHHHHHHHHHHHHHHSCCHH----HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccc-----cccHHHHHHHHHHHHHcCCccH----HHHHHHHHHHHhCC
Confidence            555555542 1256888888888888764211111     11244433332    22 2222    3333333322  11


Q ss_pred             CH---HHHHHHHHcCChHHHHhhcc---CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccH-HHHHHHHhchHHHHH
Q 013228          325 TH---EQIKYLVREGCIKPLCDLLL---CADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQ-YAQLVEEAEGLEKIE  397 (447)
Q Consensus       325 ~~---~~~~~l~~~~~l~~L~~ll~---~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~l~  397 (447)
                      .+   .....+.+ ..+..+..++.   ..+++++......+..++......--      ..+. +..      .++.+.
T Consensus       757 ~~~~~~~~~~~l~-~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~------~~~~~~~~------i~~~~~  823 (963)
T 2x19_B          757 EPAHFPPIEALFL-LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFL------CERLDVKA------VFQCAV  823 (963)
T ss_dssp             CTTTCHHHHHHHH-HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGG------CTTSCHHH------HHHHHH
T ss_pred             CcchHHHHHHHHH-HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHc------CCcccHHH------HHHHHH
Confidence            11   12221111 12333333333   24689999999999999986554310      0111 111      234444


Q ss_pred             HHhcCCCHHHHHHHHHHHHHhcCC
Q 013228          398 NLRSHDNDEIHEKSVKILETYWCG  421 (447)
Q Consensus       398 ~l~~~~~~~v~~~a~~~l~~~~~~  421 (447)
                      ..+.+++.++.+.+...+.++...
T Consensus       824 ~~l~~~~~~~~~~~l~~l~~l~~~  847 (963)
T 2x19_B          824 LALKFPEAPTVKASCGFFTELLPR  847 (963)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHGGG
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHhc
Confidence            456688899999999999988754

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=98.03  E-value=0.0021  Score=66.84  Aligned_cols=330  Identities=12%  Similarity=0.066  Sum_probs=170.2

Q ss_pred             HHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh--hhHHHH---Hh--CCCh
Q 013228           12 MQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTS--EDTKVV---ID--HGAV   84 (447)
Q Consensus        12 ~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~---~~--~~~i   84 (447)
                      +...++.++.....-. . ..  .....+++.+.+.+.  + ++++..|+.++..+.....  .....+   ..  .+..
T Consensus       218 ~~~~~l~~l~~wi~~~-~-~~--~~~~~ll~~l~~~l~--~-~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~  290 (963)
T 2x19_B          218 VRQKVLKCFSSWVQLE-V-PL--QDCEALIQAAFAALQ--D-SELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQ  290 (963)
T ss_dssp             HHHHHHHHHHHHHTSS-C-CG--GGTHHHHHHHHHHTT--S-TTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHHHHcCC-C-Cc--ccchHHHHHHHHHhC--C-chHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhH
Confidence            5555666665544321 1 11  112345677777763  4 6789999999999987421  111111   11  0112


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHh--------cCCHHHHHHHhcc----ccchhHHHHHHHHHHHh
Q 013228           85 PIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLS--------EEALIPLLTQLNK----HAKLSMLRIATWTLSNF  152 (447)
Q Consensus        85 ~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~--------~~~l~~l~~~l~~----~~~~~~~~~a~~~L~~l  152 (447)
                      +.+...+...+.......+..+..++...+   ..+..        ...+..++.....    ..+..+...++..+..+
T Consensus       291 ~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~---~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l  367 (963)
T 2x19_B          291 EQLRQAVQNGDMETSHGICRIAVALGENHS---RALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTL  367 (963)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHH---HHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHhH---HHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHH
Confidence            222223334455666666666666653211   11110        0223344443322    12444555555555555


Q ss_pred             cCCCCCC-------Ch----hhHhhhHHHHHHhhccCCh---------------hHHHHHHHHHHHhccCCcHHHHHHHH
Q 013228          153 CAGKPKP-------IF----DQVRPALPALAQLVHSNDK---------------EVMTDACRALFYLSEGTNDEIQAVIE  206 (447)
Q Consensus       153 ~~~~~~~-------~~----~~~~~~l~~l~~ll~~~~~---------------~v~~~al~~l~~l~~~~~~~~~~~~~  206 (447)
                      +......       ..    .....+++.++..+..+++               +.+..+..++..++......   +. 
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~---~l-  443 (963)
T 2x19_B          368 QDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAE---LL-  443 (963)
T ss_dssp             HHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHH---HH-
T ss_pred             HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHH---HH-
Confidence            4421110       01    1123344444444432221               11333444444443211110   00 


Q ss_pred             hCcHHHHHHhc----CCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhh---ccCCchhHHHHHHHHHHHHh
Q 013228          207 AGVCPRLVELL----GHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLL---IHNHKKSIKTDACWTISNIT  279 (447)
Q Consensus       207 ~~~~~~L~~lL----~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l---~~~~~~~v~~~a~~~l~nl~  279 (447)
                      .-+++.+...+    .+.++..+..++++++.++.+.....     ...++.++..+   ..+ ++.++..++|+++.++
T Consensus       444 ~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~-~~~vr~~~~~~l~~~~  517 (963)
T 2x19_B          444 SNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISIS-NVQLADTVMFTIGALS  517 (963)
T ss_dssp             HHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCC-SHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCC-cHHHHHHHHHHHHHHH
Confidence            11233344444    55778899999999999987654211     12233333333   334 6789999999999987


Q ss_pred             cCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccC--CCHHHHHHHH
Q 013228          280 AGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC--ADPEIVTVFL  357 (447)
Q Consensus       280 ~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~~~~~a~  357 (447)
                      ..-.... ..+ ..+++.++..+.+  +.++..|++++.+++.........++  ..++..|..++..  -+.+.+..++
T Consensus       518 ~~l~~~~-~~l-~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~~~~~~~~~~~~~~  591 (963)
T 2x19_B          518 EWLADHP-VMI-NSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYA--ANIVAVSQDVLMKQIHKTSQCMWLM  591 (963)
T ss_dssp             HHHHHCH-HHH-TTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH--HHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred             HHHHhCH-HHH-HHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHhccCCCChHHHHHHH
Confidence            5311111 222 3588888888854  89999999999999864321111111  1234455555554  2567888899


Q ss_pred             HHHHHHHHhh
Q 013228          358 KGLEKILKVG  367 (447)
Q Consensus       358 ~~l~~l~~~~  367 (447)
                      +++..++...
T Consensus       592 eai~~i~~~~  601 (963)
T 2x19_B          592 QALGFLLSAL  601 (963)
T ss_dssp             HHHHHHHTTS
T ss_pred             HHHHHHHhcC
Confidence            9999998644

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=97.99  E-value=0.0017  Score=67.96  Aligned_cols=343  Identities=11%  Similarity=0.104  Sum_probs=177.7

Q ss_pred             CCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC--hh---hHHHHHh--
Q 013228            8 DDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGT--SE---DTKVVID--   80 (447)
Q Consensus         8 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~--~~---~~~~~~~--   80 (447)
                      ++..++..++.++.....--   ....+.+...++.+.+.+. .+ ++++..|+.+|..+....  +.   ....+..  
T Consensus       207 ~~~~~~~~aL~~l~~~l~wi---~~~~~~~~~ll~~l~~~~l-~~-~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~  281 (1049)
T 3m1i_C          207 SSSSLIVATLESLLRYLHWI---PYRYIYETNILELLSTKFM-TS-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFF  281 (1049)
T ss_dssp             CCHHHHHHHHHHHHHHTTTS---CTHHHHSSSHHHHHHTHHH-HS-HHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhC---CHHHHhhhhHHHHHHHHhC-CC-HhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHH
Confidence            34667777888887766532   2344555677777774332 25 899999999999998642  21   1111111  


Q ss_pred             CCChHHHHH-hh-------------CCCCHHHHHHHHHHHHHhhcC-------ChhHHHHHHhcCCHHHHHHHhccccch
Q 013228           81 HGAVPIFVK-LL-------------ASPSDDIREQAVCALGNVAAD-------SARCRDLVLSEEALIPLLTQLNKHAKL  139 (447)
Q Consensus        81 ~~~i~~L~~-ll-------------~~~~~~i~~~a~~~L~~l~~~-------~~~~~~~~~~~~~l~~l~~~l~~~~~~  139 (447)
                      .+.+..+.. ++             .+.+.+.....+..+..+...       .+..+..+  ..+++.++... ..++.
T Consensus       282 ~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~-~~~d~  358 (1049)
T 3m1i_C          282 QNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLS-KIEER  358 (1049)
T ss_dssp             HHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHH-TSSCH
T ss_pred             HHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHH-cCCcH
Confidence            122222221 11             122444555555555444321       11111111  12344455544 34567


Q ss_pred             hHHHHHHHHHHHhcC----CCCC--CChhhHhhhHHHHHHhhccCC--------h--------------hHHHHHHHHHH
Q 013228          140 SMLRIATWTLSNFCA----GKPK--PIFDQVRPALPALAQLVHSND--------K--------------EVMTDACRALF  191 (447)
Q Consensus       140 ~~~~~a~~~L~~l~~----~~~~--~~~~~~~~~l~~l~~ll~~~~--------~--------------~v~~~al~~l~  191 (447)
                      ++...++..+..++.    ....  ........+++.++..+..++        +              ..+..+..+|.
T Consensus       359 ~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~  438 (1049)
T 3m1i_C          359 ELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLV  438 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHH
Confidence            777778777777765    2211  111233555566665543211        0              12333444555


Q ss_pred             HhccCCcHHHHHHHHhCcHHHHHHhcC--CCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhcc-----CCc
Q 013228          192 YLSEGTNDEIQAVIEAGVCPRLVELLG--HPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIH-----NHK  264 (447)
Q Consensus       192 ~l~~~~~~~~~~~~~~~~~~~L~~lL~--~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~-----~~~  264 (447)
                      .++.......   . .-+.+.+-..+.  ..++..+..++++++.++.........-.-..+++.+..+...     + .
T Consensus       439 ~l~~~~~~~~---l-~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~-~  513 (1049)
T 3m1i_C          439 YLTHLNVIDT---E-EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDN-K  513 (1049)
T ss_dssp             HHHHHCHHHH---H-HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHH-H
T ss_pred             HHHccCHHHH---H-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccc-h
Confidence            5542222111   1 112344444454  3678899999999999986543221111111244455544322     2 4


Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHH--------HHHHHcC
Q 013228          265 KSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQI--------KYLVREG  336 (447)
Q Consensus       265 ~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~--------~~l~~~~  336 (447)
                      +.++..++|+++.++..-..+.+ .+. .+++.++..+.++++.++..|++++.+++........        .++  ..
T Consensus       514 ~~v~~~~~~~lgry~~~~~~~~~-~l~-~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~--~~  589 (1049)
T 3m1i_C          514 AVVASDIMYVVGQYPRFLKAHWN-FLR-TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI--QT  589 (1049)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHCHH-HHH-HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH--HH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHH-HHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHH--HH
Confidence            55566799999987652111111 222 2566777778777899999999999999974332211        111  11


Q ss_pred             ChHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 013228          337 CIKPLCDLLLCADPEIVTVFLKGLEKILKVG  367 (447)
Q Consensus       337 ~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~  367 (447)
                      ++..+..++..-+.+-.....+++..++...
T Consensus       590 il~~l~~~~~~~~~~~~~~~~eai~~ii~~~  620 (1049)
T 3m1i_C          590 IIRDIQKTTADLQPQQVHTFYKACGIIISEE  620 (1049)
T ss_dssp             HHHTHHHHHTTSCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHcC
Confidence            3333444455545544566677777776543

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=97.91  E-value=0.0027  Score=65.66  Aligned_cols=389  Identities=6%  Similarity=0.063  Sum_probs=202.9

Q ss_pred             CCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcC-----CCCHHHHHHHHHHHHHHcCCChhhHHHHHhCC
Q 013228            8 DDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMR-----EDYPQLQFEAAWALKNIVSGTSEDTKVVIDHG   82 (447)
Q Consensus         8 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~   82 (447)
                      .++..+..+++++..++.+...+..+.++ ..+++.|+.++.+     +. ..++..++|+++..+.--..... +.. .
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l-~~vi~~Ll~l~~~~~~~d~k-~~v~~t~~~~lGry~~wl~~~~~-~L~-~  540 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLDLCVKKRGKDNK-AVVASDIMYVVGQYPRFLKAHWN-FLR-T  540 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHHHHCCSHHHH-HHHHHHHHHHHHTCHHHHHHCHH-HHH-H
T ss_pred             CCHHHHHHHHHHHHHHHcCCCchhHHHHH-HHHHHHHHHhhhccccCcch-HHHHHHHHHHHHHHHHHHhccHH-HHH-H
Confidence            57899999999999998764222122222 2367788887753     22 34556777999887652111111 111 3


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHh------cCCHHHHHHHhc---cccchhHHHHHHHHHHHhc
Q 013228           83 AVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLS------EEALIPLLTQLN---KHAKLSMLRIATWTLSNFC  153 (447)
Q Consensus        83 ~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~------~~~l~~l~~~l~---~~~~~~~~~~a~~~L~~l~  153 (447)
                      ++..|+..+.++++.++..|++++.+||..   ++..+..      ...++.+++.+.   ...+......+..+++.+.
T Consensus       541 vl~~L~~~l~~~~~~v~~~A~~al~~l~~~---c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi  617 (1023)
T 4hat_C          541 VILKLFEFMHETHEGVQDMACDTFIKIVQK---CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIII  617 (1023)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHHH---HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHHH---HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            456677777777899999999999999964   4444432      123444444332   2234556677888888888


Q ss_pred             CCCCCCC--hhhHhhhHHHHHH----hhc--cCC---------hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHh
Q 013228          154 AGKPKPI--FDQVRPALPALAQ----LVH--SND---------KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVEL  216 (447)
Q Consensus       154 ~~~~~~~--~~~~~~~l~~l~~----ll~--~~~---------~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~l  216 (447)
                      ...+...  ......+++.+..    +..  +.+         .......++++..++..-......... .+.+.++.+
T Consensus       618 ~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~~-~i~~~~l~~  696 (1023)
T 4hat_C          618 SEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLG-HIYYNMLQL  696 (1023)
T ss_dssp             TTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHH
T ss_pred             HhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHHHHHH-HHHHHHHHH
Confidence            7764322  1122333332222    221  011         122233344443333211110000000 112222222


Q ss_pred             cCC------------C-----Cc------hhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhc----cC----Cch
Q 013228          217 LGH------------P-----SP------SVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLI----HN----HKK  265 (447)
Q Consensus       217 L~~------------~-----~~------~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~----~~----~~~  265 (447)
                      .+.            +     .+      .+++..++.+.......+.. + .+...+++.+++.+-    ..    +++
T Consensus       697 y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~-~-~~~~~~~~~l~~~vl~dY~~~~~~~r~~  774 (1023)
T 4hat_C          697 YRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNL-D-DVVKVLVEPLLNAVLEDYMNNVPDARDA  774 (1023)
T ss_dssp             HHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCH-H-HHHHHTHHHHHHHHHHHHHHSCGGGCCH
T ss_pred             HHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCH-H-HHHHHhHHHHHHHHHHHHHhCChhhccH
Confidence            100            0     11      12333344444333222211 1 122235555544331    11    134


Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc---CchhHHHHHHHHHHHhcCCCCH-------HHHHHHHHc
Q 013228          266 SIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQN---AEFDIKNWAARAISNATFGGTH-------EQIKYLVRE  335 (447)
Q Consensus       266 ~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~---~~~~v~~~a~~aL~~l~~~~~~-------~~~~~l~~~  335 (447)
                      ++-.-....+..+...-.+....+++. ++..-+.+++.   +.|+.|..-...+..+...+-.       +..+.    
T Consensus       775 ~vL~l~s~iv~~~~~~~~~~~~~il~~-vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~----  849 (1023)
T 4hat_C          775 EVLNCMTTVVEKVGHMIPQGVILILQS-VFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKL----  849 (1023)
T ss_dssp             HHHHHHHHHHHHHGGGCHHHHHHHHHH-HHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHH----
T ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHH----
Confidence            444444444444443333444444444 55555666664   4688888888888877654322       22222    


Q ss_pred             CChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHH----HhcCCCHHHHHHH
Q 013228          336 GCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIEN----LRSHDNDEIHEKS  411 (447)
Q Consensus       336 ~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~----l~~~~~~~v~~~a  411 (447)
                       +++.++-..++.+.++...+++++..++......+.        ..+...|-+.-+...+..    +..+...-.++.-
T Consensus       850 -~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~~--------~~~~~~f~~~~~~~~~~~~~~v~td~~h~~~f~~~  920 (1023)
T 4hat_C          850 -FVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGN--------VPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQ  920 (1023)
T ss_dssp             -HHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHCS--------SHHHHHHHHHHHHHHHHHHHHHHHSSSCGGGHHHH
T ss_pred             -HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCC--------hHHHHHHHHHHHHHHHHHHHHHHhCchhhhhHHHH
Confidence             577777888999999999999999999987664211        124555555555555444    3444555556666


Q ss_pred             HHHHHHhcC
Q 013228          412 VKILETYWC  420 (447)
Q Consensus       412 ~~~l~~~~~  420 (447)
                      ..+|..++.
T Consensus       921 ~~~l~~l~~  929 (1023)
T 4hat_C          921 ALLLMKLIS  929 (1023)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            677777665

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=97.75  E-value=0.0078  Score=63.07  Aligned_cols=312  Identities=12%  Similarity=0.104  Sum_probs=170.8

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhcCC--hh--
Q 013228           41 VPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVK-LLASPSDDIREQAVCALGNVAADS--AR--  115 (447)
Q Consensus        41 v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-ll~~~~~~i~~~a~~~L~~l~~~~--~~--  115 (447)
                      ++.+.+++....++.++..++.++.+....-+  ...+.+...++.++. ++  .++.++..++.+|..+....  +.  
T Consensus       196 ~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~--~~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~~~~~~~~  271 (1049)
T 3m1i_C          196 FKLCFQVLEQGSSSSLIVATLESLLRYLHWIP--YRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDND  271 (1049)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHCCCCTTCH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC--HHHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhCCCCcchh
Confidence            34445555544447899999999998776333  233555667777773 44  37899999999999998542  21  


Q ss_pred             -HHHHHHhcCCHHHHHHHhc-----------------cccchhHHHHHHHHHHHhcCCC------CCCChhhHhhhHHHH
Q 013228          116 -CRDLVLSEEALIPLLTQLN-----------------KHAKLSMLRIATWTLSNFCAGK------PKPIFDQVRPALPAL  171 (447)
Q Consensus       116 -~~~~~~~~~~l~~l~~~l~-----------------~~~~~~~~~~a~~~L~~l~~~~------~~~~~~~~~~~l~~l  171 (447)
                       ....+..  .++.++..+.                 .+.+.+.....+..+..+....      +.........+++.+
T Consensus       272 ~~~~~~~~--l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l  349 (1049)
T 3m1i_C          272 LIKRQTVL--FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYL  349 (1049)
T ss_dssp             HHHHHHHH--HHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHH
T ss_pred             hHHHHHHH--HHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Confidence             1111111  1122222110                 1224444444444443332110      111122335567777


Q ss_pred             HHhhccCChhHHHHHHHHHHHhcc----CC--cHHHHHHHHhCcHHHHHHhcCCCCc----------------------h
Q 013228          172 AQLVHSNDKEVMTDACRALFYLSE----GT--NDEIQAVIEAGVCPRLVELLGHPSP----------------------S  223 (447)
Q Consensus       172 ~~ll~~~~~~v~~~al~~l~~l~~----~~--~~~~~~~~~~~~~~~L~~lL~~~~~----------------------~  223 (447)
                      +.....++.++...++..+..++.    .+  ....+.++ ..+++.++..+..+++                      .
T Consensus       350 l~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l-~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~  428 (1049)
T 3m1i_C          350 IQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEIC-SQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQ  428 (1049)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHH-HHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHH
T ss_pred             HHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH-HHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHH
Confidence            777777788888888877777664    11  11111111 1345556665533210                      1


Q ss_pred             hHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhcc-CCchhHHHHHHHHHHHHhcCCHHH-HHHHHHcCChHHHHHH
Q 013228          224 VLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIH-NHKKSIKTDACWTISNITAGNSEH-IQAVIDAGLIGPLVNL  301 (447)
Q Consensus       224 v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~-~~~~~v~~~a~~~l~nl~~~~~~~-~~~l~~~~~~~~L~~~  301 (447)
                      .+..+..+|..++...+...-.    -+.+.+-..+.+ ..+...+..++++++.++...... ...+.. .+++.+..+
T Consensus       429 ~~~~~~~~L~~l~~~~~~~~l~----~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~-~v~~~l~~l  503 (1049)
T 3m1i_C          429 LYKSEREVLVYLTHLNVIDTEE----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDL  503 (1049)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHH----HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHH-HHHHHHHHH
Confidence            2334555666665333221111    123444444543 227788999999999987642222 112111 144444443


Q ss_pred             Hhc-----CchhHHHHHHHHHHHhcCC--CCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhh
Q 013228          302 LQN-----AEFDIKNWAARAISNATFG--GTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEA  369 (447)
Q Consensus       302 l~~-----~~~~v~~~a~~aL~~l~~~--~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~  369 (447)
                      ...     +++.++..++++++.++..  ..++...     .+++.++..+.+.++.++..|+.++.++++.+..
T Consensus       504 ~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~-----~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~  573 (1049)
T 3m1i_C          504 TVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY  573 (1049)
T ss_dssp             TTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-----HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTH
T ss_pred             HhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            321     2345555688999877642  1222222     2577788888888999999999999999986543

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.60  E-value=0.0017  Score=66.91  Aligned_cols=306  Identities=8%  Similarity=-0.021  Sum_probs=167.2

Q ss_pred             CCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh--hHHHHHHhcCCHH
Q 013228           50 REDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSA--RCRDLVLSEEALI  127 (447)
Q Consensus        50 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~--~~~~~~~~~~~l~  127 (447)
                      +.+ +.++..++.++......-+  ...+++.+.++.+..++.+  ++++..|+.+|..+.....  ..+..+...=.+.
T Consensus       204 ~~~-~~l~~~~L~~l~s~i~wi~--~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~  278 (980)
T 3ibv_A          204 AKN-YGTVGLCLQVYAQWVSWIN--INLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLN  278 (980)
T ss_dssp             TTC-HHHHHHHHHHHHHHTTTSC--HHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred             cCC-HHHHHHHHHHHHHHHhhcC--HHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHH
Confidence            356 8899999999999987322  3456666788888888865  8999999999999984432  2222222110011


Q ss_pred             HHHHHhcc-ccchhHHHHHHHHH-------HHhcCCCCC-CC-------hhhHhhhHHHHHHhhccCChhHHHHHHHHHH
Q 013228          128 PLLTQLNK-HAKLSMLRIATWTL-------SNFCAGKPK-PI-------FDQVRPALPALAQLVHSNDKEVMTDACRALF  191 (447)
Q Consensus       128 ~l~~~l~~-~~~~~~~~~a~~~L-------~~l~~~~~~-~~-------~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~  191 (447)
                      ..+..+.. ..|.++.+..+..+       ..+ ...+. ..       ......+++.++.++.+++.++...++..+.
T Consensus       279 ~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~-~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~  357 (980)
T 3ibv_A          279 LFFSKSQEQSTDPNFDEHVAKLINAQGVELVAI-KSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLS  357 (980)
T ss_dssp             HHHCC-----CCHHHHHHHHHHHHHHHHHHHHH-HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHH
T ss_pred             HHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH-ccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence            12222211 34555554433333       222 21111 11       1334678899999999998888777766665


Q ss_pred             HhccC-----C----cHHHHHHHHhCcHHHHHHhcCCCCc----------------hhHhHHHHHHHHhhcCChhhHHH-
Q 013228          192 YLSEG-----T----NDEIQAVIEAGVCPRLVELLGHPSP----------------SVLTRALQTVVNIAAGDDFQTQC-  245 (447)
Q Consensus       192 ~l~~~-----~----~~~~~~~~~~~~~~~L~~lL~~~~~----------------~v~~~a~~~l~~l~~~~~~~~~~-  245 (447)
                      .+...     .    ......++ ..+++.++..+..++.                +.|+.....+..++.-.+...-. 
T Consensus       358 ~~l~~~~~~~~~~~~~~~~~~~l-~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~  436 (980)
T 3ibv_A          358 DLLVSLRKESSSKELSASLKEFL-KSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSY  436 (980)
T ss_dssp             HHHHHHHHHTTSCCCCHHHHHHH-HHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             HHHHHHHhccccccccHHHHHHH-HHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence            54421     0    11111121 1345555555543211                23333332222222222221111 


Q ss_pred             HHhcCChHHHHHhhc---cCCchhHHHHHHHHHHHHhcCCHHHHHHHH-HcC----ChHHHHHHHh-----cCchhHHHH
Q 013228          246 IINCGALPYLLGLLI---HNHKKSIKTDACWTISNITAGNSEHIQAVI-DAG----LIGPLVNLLQ-----NAEFDIKNW  312 (447)
Q Consensus       246 ~~~~~~l~~l~~~l~---~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~-~~~----~~~~L~~~l~-----~~~~~v~~~  312 (447)
                      +.+ -+.+.+...+.   +. +...++.+..+++.++.+-........ ...    +++.+..++.     .+++.++..
T Consensus       437 ~~~-~i~~~l~~~l~~~~~~-~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~  514 (980)
T 3ibv_A          437 MYS-AITSSLSTAATLSPEN-SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLL  514 (980)
T ss_dssp             HHH-HHHHHHHHHTTSCHHH-HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHH
T ss_pred             HHH-HHHHHHHHHhcccCCC-CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence            110 11122223332   23 677888999999998774322111000 011    3444555554     567999999


Q ss_pred             HHHHHHHhcCCC--CHHHHHHHHHcCChHHHHh--hccCCCHHHHHHHHHHHHHHHHhhhh
Q 013228          313 AARAISNATFGG--THEQIKYLVREGCIKPLCD--LLLCADPEIVTVFLKGLEKILKVGEA  369 (447)
Q Consensus       313 a~~aL~~l~~~~--~~~~~~~l~~~~~l~~L~~--ll~~~~~~~~~~a~~~l~~l~~~~~~  369 (447)
                      ++++++..+..-  .++....     +++.++.  .+.++++.++..|..++.++++.+..
T Consensus       515 ~~~~l~rys~~~~~~~~~l~~-----~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~  570 (980)
T 3ibv_A          515 YMEILVRYASFFDYESAAIPA-----LIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK  570 (980)
T ss_dssp             HHHHHHHTGGGGGTCCTTHHH-----HHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHhcCchhHHH-----HHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence            999999987642  1222221     3455555  55567788999999999999987764

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.57  E-value=0.00099  Score=58.10  Aligned_cols=186  Identities=13%  Similarity=0.102  Sum_probs=124.8

Q ss_pred             HHHHhccccchhHHHHHHHHHHHhcCCCCCCC-----hhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcH----
Q 013228          129 LLTQLNKHAKLSMLRIATWTLSNFCAGKPKPI-----FDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTND----  199 (447)
Q Consensus       129 l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~-----~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~----  199 (447)
                      +-+.| .+.++..|..++..+..+....+...     ........+.+...+.+.+..++..++.++..++.....    
T Consensus        14 l~e~l-~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~   92 (278)
T 4ffb_C           14 LEERL-TYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLK   92 (278)
T ss_dssp             HHHHT-TCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred             HHHhc-ccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            45666 78899999999999888775542211     111244556677788899999999999999888753221    


Q ss_pred             -HHHHHHHhCcHHHHHHh-cCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHH
Q 013228          200 -EIQAVIEAGVCPRLVEL-LGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISN  277 (447)
Q Consensus       200 -~~~~~~~~~~~~~L~~l-L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~n  277 (447)
                       ......-..+++.|+.- +.+....++..+..++..++...... .     .+++.+...+.+. ++.++..++..|..
T Consensus        93 ~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~-----~~~e~l~~~l~~K-npkv~~~~l~~l~~  165 (278)
T 4ffb_C           93 NAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-T-----QSVELVIPFFEKK-LPKLIAAAANCVYE  165 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-H-----HHHHHHGGGGGCS-CHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-H-----HHHHHHHHHHhcc-CHHHHHHHHHHHHH
Confidence             11112223467777754 78888999999988887776433211 1     1245677778888 99999999888887


Q ss_pred             HhcC-CHH--HHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCC
Q 013228          278 ITAG-NSE--HIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFG  323 (447)
Q Consensus       278 l~~~-~~~--~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~  323 (447)
                      +... +..  .....+. .+++.+..++.+.++.||..|..++..+...
T Consensus       166 ~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          166 LMAAFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             HHHHHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            7641 111  0112222 2566677888999999999999999888664

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.51  E-value=0.0028  Score=55.18  Aligned_cols=185  Identities=12%  Similarity=0.135  Sum_probs=121.5

Q ss_pred             cccCCCHHHHHHHHHHHHHHHccCCCCch-hhhh--ccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh-----hhH
Q 013228            4 GVWSDDNNMQLEATTHIRKLLSNARSAPT-EEVI--PFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTS-----EDT   75 (447)
Q Consensus         4 ~l~s~~~~~~~~a~~~l~~l~~~~~~~~~-~~~~--~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~-----~~~   75 (447)
                      .|.|.++..|..|+..+.++......... ....  -....+.+.+.+.+.+ ..++..++.++..++....     ...
T Consensus        17 ~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~~~~~~~~~~   95 (278)
T 4ffb_C           17 RLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAFASSSLKNAH   95 (278)
T ss_dssp             HTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTCC---CCHHH
T ss_pred             hcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHhhhhhcccch
Confidence            57899999999999999998875422111 1111  1235666777887777 8999999999998875211     111


Q ss_pred             HHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcC
Q 013228           76 KVVIDHGAVPIFVK-LLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCA  154 (447)
Q Consensus        76 ~~~~~~~~i~~L~~-ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~  154 (447)
                      ....-..+++.|+. .+.+..+.++..+..++..++....... .     +++.++..+ .+.++.++..++..|..+..
T Consensus        96 ~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~-~-----~~e~l~~~l-~~Knpkv~~~~l~~l~~~l~  168 (278)
T 4ffb_C           96 NITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT-Q-----SVELVIPFF-EKKLPKLIAAAANCVYELMA  168 (278)
T ss_dssp             HHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH-H-----HHHHHGGGG-GCSCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH-H-----HHHHHHHHH-hccCHHHHHHHHHHHHHHHH
Confidence            11122345677775 4778889999999888887764322111 1     134444455 67788888888888877765


Q ss_pred             CC--CCCC-hhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccC
Q 013228          155 GK--PKPI-FDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEG  196 (447)
Q Consensus       155 ~~--~~~~-~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~  196 (447)
                      ..  .... ......+++.+..++.+.++.||..|..++..+-..
T Consensus       169 ~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          169 AFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             HHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            42  1111 223355677788899999999999999998877644

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.50  E-value=0.0048  Score=52.44  Aligned_cols=181  Identities=12%  Similarity=0.044  Sum_probs=119.5

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhc----CCCCCCC
Q 013228           85 PIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFC----AGKPKPI  160 (447)
Q Consensus        85 ~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~----~~~~~~~  160 (447)
                      +.+...+-+.+..-+..++..|.......+  ...+...+.+-..+.+-..+++..+...++.+|..+.    ...+...
T Consensus        49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~--~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~  126 (266)
T 2of3_A           49 VSLMSQLFHKDFKQHLAALDSLVRLADTSP--RSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMS  126 (266)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHHHHCH--HHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhhhCh--HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccch
Confidence            445566666677777777777766554332  1222111112222221113567777777777766653    3323333


Q ss_pred             hhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCCh
Q 013228          161 FDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD  240 (447)
Q Consensus       161 ~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~  240 (447)
                      ......++|.|+.-+.++.+.++..+-.++..+..-.+.       ..+++.++.-+.+.++..|..++..++.+.....
T Consensus       127 ~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G  199 (266)
T 2of3_A          127 QEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYYITNAG  199 (266)
T ss_dssp             HHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC
Confidence            334467899999999999999999888877666532111       1356778888899999999999999999874322


Q ss_pred             hhHHHHHhcCCh---HHHHHhhccCCchhHHHHHHHHHHHHhc
Q 013228          241 FQTQCIINCGAL---PYLLGLLIHNHKKSIKTDACWTISNITA  280 (447)
Q Consensus       241 ~~~~~~~~~~~l---~~l~~~l~~~~~~~v~~~a~~~l~nl~~  280 (447)
                      ..     ....+   +.+.+++.+. +..||..|..++..+-.
T Consensus       200 ~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          200 IS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK  236 (266)
T ss_dssp             SG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred             CC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence            11     23467   9999999998 99999999999987655

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.46  E-value=0.029  Score=57.86  Aligned_cols=340  Identities=11%  Similarity=0.044  Sum_probs=178.6

Q ss_pred             CCHHHHHHHHHHHHHHHccCCCCchhhh-----hccCCHHHHHHhhc-----CCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 013228            8 DDNNMQLEATTHIRKLLSNARSAPTEEV-----IPFGVVPRFVEFLM-----REDYPQLQFEAAWALKNIVSGTSEDTKV   77 (447)
Q Consensus         8 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~-----~~~~~v~~L~~ll~-----~~~~~~v~~~a~~~L~~l~~~~~~~~~~   77 (447)
                      .++.....|+.+|..++.+-.. ....+     .-..+++.+..+++     .+. +.|+..++++++..+..-..    
T Consensus       455 ~~W~~~EaaL~~l~~iaE~i~~-~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~h-p~V~~~~~~~l~rys~~~~~----  528 (980)
T 3ibv_A          455 NSWQLIEFALYETYIFGEGLRG-PDAFFNEVDKSPTVLSQILALVTTSQVCRHPH-PLVQLLYMEILVRYASFFDY----  528 (980)
T ss_dssp             HHHHHHHHHHHHHHHTTTTCCS-GGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCC-HHHHHHHHHHHHHTGGGGGT----
T ss_pred             CCHHHHHHHHHHHHHHHhhccc-cccccCcccchhHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHHHhc----
Confidence            3467778888888887765321 11111     01124455666655     444 89999999999998873322    


Q ss_pred             HHhCCChHHHHHhh------CCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcc--------ccch----
Q 013228           78 VIDHGAVPIFVKLL------ASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNK--------HAKL----  139 (447)
Q Consensus        78 ~~~~~~i~~L~~ll------~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~--------~~~~----  139 (447)
                        ....++.++..+      .++++.++..|+.++.++|.....   .+  .+.++.+++.+..        ..+.    
T Consensus       529 --~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~---~L--~~~~~~il~~l~~lL~~~~~~~~~~~~~~  601 (980)
T 3ibv_A          529 --ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK---QV--VNYTESSLAMLGDLLNISVSPVTDMDAPV  601 (980)
T ss_dssp             --CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT---TC--SSSHHHHHHHTTGGGCCCCCCCCC--CSS
T ss_pred             --CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH---Hh--hhHHHHHHHHHHHhhcCcCCCCCcccccc
Confidence              123455555543      346788999999999999965432   22  2446666666531        0100    


Q ss_pred             ------------hHHHHHHHHHHHhcCCC---CCCChhhHhhhHHHHHH----hhccC----Chh-HHHHHHHHHHHhcc
Q 013228          140 ------------SMLRIATWTLSNFCAGK---PKPIFDQVRPALPALAQ----LVHSN----DKE-VMTDACRALFYLSE  195 (447)
Q Consensus       140 ------------~~~~~a~~~L~~l~~~~---~~~~~~~~~~~l~~l~~----ll~~~----~~~-v~~~al~~l~~l~~  195 (447)
                                  +-+.....+++.+....   +.........+++.++.    .+...    +.. -..+.+.+++.++.
T Consensus       602 ~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lak  681 (980)
T 3ibv_A          602 PTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAK  681 (980)
T ss_dssp             CCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhc
Confidence                        12334445555554332   22233334555554443    33222    211 23356777777774


Q ss_pred             CCcH-------HHHHHHHhCcHHHHHHhcC--CCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchh
Q 013228          196 GTND-------EIQAVIEAGVCPRLVELLG--HPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKS  266 (447)
Q Consensus       196 ~~~~-------~~~~~~~~~~~~~L~~lL~--~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~  266 (447)
                      .-..       ....+.  .+.+.+...+.  ..+..++..++.++..+...-.....     ..++.++..+-+.....
T Consensus       682 gf~~~~~~~~p~~~~f~--~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~-----p~lp~~i~~ll~~~~~~  754 (980)
T 3ibv_A          682 GFPARGSEEVAWLASFN--KASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDML-----PKVPQLISILLNSIDMN  754 (980)
T ss_dssp             TSCSCC-CCCSHHHHHH--HHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHT-----TTHHHHHHHHHHHCCTT
T ss_pred             cCCcccCCCCcHHHHHH--HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHH-----HHHHHHHHHHHhcCCHH
Confidence            4211       111111  34555655564  36788999999999999875543322     45666666554321333


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHc---CChHHHHHHHhcCc---------hhHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 013228          267 IKTDACWTISNITAGNSEHIQAVIDA---GLIGPLVNLLQNAE---------FDIKNWAARAISNATFGGTHEQIKYLVR  334 (447)
Q Consensus       267 v~~~a~~~l~nl~~~~~~~~~~l~~~---~~~~~L~~~l~~~~---------~~v~~~a~~aL~~l~~~~~~~~~~~l~~  334 (447)
                      --....|.++.+...-...+..+++.   .++..+..++..+.         ..+++.-...+..+..++-......-.+
T Consensus       755 e~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n  834 (980)
T 3ibv_A          755 ELVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFTEEN  834 (980)
T ss_dssp             THHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGGSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCcc
Confidence            45566777877776211112222221   13444445555321         2355555556666665431111100011


Q ss_pred             cCChH----HHHhhcc-CCCHHHHHHHHHHHHHHHHhh
Q 013228          335 EGCIK----PLCDLLL-CADPEIVTVFLKGLEKILKVG  367 (447)
Q Consensus       335 ~~~l~----~L~~ll~-~~~~~~~~~a~~~l~~l~~~~  367 (447)
                      .+.++    .++.+-. .+++..++.|+..+.+++..-
T Consensus       835 ~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~~  872 (980)
T 3ibv_A          835 QVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSLW  872 (980)
T ss_dssp             HTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC-
T ss_pred             hHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHH
Confidence            23333    3333322 367889999999999999864

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.42  E-value=0.0009  Score=61.97  Aligned_cols=244  Identities=13%  Similarity=0.077  Sum_probs=158.6

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh--HHHHHhCCChHHHHHhh--CC--------CCHHHHHHHHHHHH
Q 013228           40 VVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSED--TKVVIDHGAVPIFVKLL--AS--------PSDDIREQAVCALG  107 (447)
Q Consensus        40 ~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~--~~~~~~~~~i~~L~~ll--~~--------~~~~i~~~a~~~L~  107 (447)
                      ..+.|+.-|-++. .++|..|+.+|..+.......  +....+....-.++.++  +.        --..||+.|+.+|+
T Consensus       175 fcE~L~~DLFdp~-WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG  253 (800)
T 3oc3_A          175 FFEQISDNLLSYE-WYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS  253 (800)
T ss_dssp             TTHHHHHHTTCSS-HHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcc-hhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence            5677777788899 799999999999987632210  00000112233333332  11        12579999999999


Q ss_pred             HhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHH
Q 013228          108 NVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDAC  187 (447)
Q Consensus       108 ~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al  187 (447)
                      .+ ..-+.-      ..++..++..+ .....+++..++..|.++. +- -..   ..++++.++..|.+.|++|+..|+
T Consensus       254 aL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL~-DL-L~~---Ld~Vv~aVL~GL~D~DDDVRAVAA  320 (800)
T 3oc3_A          254 RI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGYLK-EF-VED---KDGLCRKLVSLLSSPDEDIKLLSA  320 (800)
T ss_dssp             HH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHTG-GG-CCC---HHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHHHH-HH-HHH---HHHHHHHHHhhcCCcccHHHHHHH
Confidence            98 554432      33455555444 5667899999999999992 11 111   688899999999999999999999


Q ss_pred             HHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCC--chhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCch
Q 013228          188 RALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPS--PSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKK  265 (447)
Q Consensus       188 ~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~  265 (447)
                      .+|.-++ .+ ....     .++..+...|.+-+  ..-....+..|+.++......   ..+...+|.|..+++++ -.
T Consensus       321 etLiPIA-~p-~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHt-IT  389 (800)
T 3oc3_A          321 ELLCHFP-IT-DSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSP-VP  389 (800)
T ss_dssp             HHHTTSC-CS-STHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCS-SH
T ss_pred             HHhhhhc-ch-hhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCC-cH
Confidence            9999998 22 2222     34566666664422  223344566777777655321   12247889999999999 99


Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHH
Q 013228          266 SIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAIS  318 (447)
Q Consensus       266 ~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~  318 (447)
                      .||..+..++..+.  .......+        ..+++-.++++++..+..+..
T Consensus       390 SVR~AVL~TL~tfL--~~~~LRLI--------FQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          390 EVRTSILNMVKNLS--EESIDFLV--------AEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             HHHHHHHHHTTTCC--CHHHHHHH--------HHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH--hhhHHHHH--------HHHHHhCCcHHHHHHHHHHHH
Confidence            99999999988776  22222222        222344567788877777764

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.41  E-value=0.0016  Score=55.35  Aligned_cols=178  Identities=13%  Similarity=0.094  Sum_probs=117.6

Q ss_pred             HHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHH----hcCCCCchhHhHHHHHHHHhhcC----Chh
Q 013228          170 ALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVE----LLGHPSPSVLTRALQTVVNIAAG----DDF  241 (447)
Q Consensus       170 ~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~----lL~~~~~~v~~~a~~~l~~l~~~----~~~  241 (447)
                      .+...+-+.|..-+..++..|.......+..   +.  ..++.+++    .+.+++..+...++.++..+...    ...
T Consensus        50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~---~~--~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~  124 (266)
T 2of3_A           50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRS---LL--SNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETP  124 (266)
T ss_dssp             HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHH---HH--HTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhhhChHH---HH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence            3455555667777777777776655333221   11  12333333    33467888888888888776421    100


Q ss_pred             hHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHh
Q 013228          242 QTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA-GNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNA  320 (447)
Q Consensus       242 ~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l  320 (447)
                      ... --..-++|.|+.-+.++ ...+|..+-.++..++. .++.        .+++.+++-+.+.+...|..++..+..+
T Consensus       125 ~~~-~ea~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v~~~~--------~v~~~l~~g~ksKN~R~R~e~l~~l~~l  194 (266)
T 2of3_A          125 MSQ-EEVSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDVVGPL--------KMTPMLLDALKSKNARQRSECLLVIEYY  194 (266)
T ss_dssp             CCH-HHHHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             chH-HHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHCCHH--------HHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence            101 00123678999999888 88899888777766654 2222        2566677888889999999999999888


Q ss_pred             cCCCCHHHHHHHHHcCCh---HHHHhhccCCCHHHHHHHHHHHHHHHHhhh
Q 013228          321 TFGGTHEQIKYLVREGCI---KPLCDLLLCADPEIVTVFLKGLEKILKVGE  368 (447)
Q Consensus       321 ~~~~~~~~~~~l~~~~~l---~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~  368 (447)
                      .......      ....+   +.+..++.+.|..++.+|+.++..+.....
T Consensus       195 i~~~G~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~G  239 (266)
T 2of3_A          195 ITNAGIS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEG  239 (266)
T ss_dssp             HHHHCSG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhcCCC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence            6532111      23468   999999999999999999999998887543

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.40  E-value=0.00074  Score=62.52  Aligned_cols=246  Identities=17%  Similarity=0.123  Sum_probs=157.8

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhc--CCHHHHHHHhcc---------ccchhHHHHHHHHHHH
Q 013228           83 AVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSE--EALIPLLTQLNK---------HAKLSMLRIATWTLSN  151 (447)
Q Consensus        83 ~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~--~~l~~l~~~l~~---------~~~~~~~~~a~~~L~~  151 (447)
                      ..+.|+.-|-++..++|..|+.+|..+..............  +..-.++..+.-         ..-..+++.++.+|+.
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa  254 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR  254 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence            45677777788999999999999999874332110000111  223333333321         1124799999999999


Q ss_pred             hcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHH
Q 013228          152 FCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQT  231 (447)
Q Consensus       152 l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~  231 (447)
                      + ..-+..     ..++..++..+..+..+++..++-.|..+..--..      -.++++.++..|.+.+++|+..|+.+
T Consensus       255 L-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~------Ld~Vv~aVL~GL~D~DDDVRAVAAet  322 (800)
T 3oc3_A          255 I-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED------KDGLCRKLVSLLSSPDEDIKLLSAEL  322 (800)
T ss_dssp             H-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC------HHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             H-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH------HHHHHHHHHhhcCCcccHHHHHHHHH
Confidence            9 554443     34555555666888999999999999988211111      23568888999999999999999999


Q ss_pred             HHHhhcCChhhHHHHHhcCChHHHHHhhccCCc-hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHH
Q 013228          232 VVNIAAGDDFQTQCIINCGALPYLLGLLIHNHK-KSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIK  310 (447)
Q Consensus       232 l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~-~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~  310 (447)
                      |.-++  .+.....     ++..+-..|.+-++ ..........|+.++...+.   .......+|.|...+.+.-+.||
T Consensus       323 LiPIA--~p~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtITSVR  392 (800)
T 3oc3_A          323 LCHFP--ITDSLDL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPVPEVR  392 (800)
T ss_dssp             HTTSC--CSSTHHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSSHHHH
T ss_pred             hhhhc--chhhHHH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCcHHHH
Confidence            99888  2222232     33345555543212 22233445566666653321   01123579999999999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHH
Q 013228          311 NWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLE  361 (447)
Q Consensus       311 ~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~  361 (447)
                      ..++.++..+.   +......        ...++|-+++++++..+..+..
T Consensus       393 ~AVL~TL~tfL---~~~~LRL--------IFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          393 TSILNMVKNLS---EESIDFL--------VAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             HHHHHHTTTCC---CHHHHHH--------HHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH---hhhHHHH--------HHHHHHhCCcHHHHHHHHHHHH
Confidence            99999998887   2222222        2334667788888888877774

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=97.39  E-value=0.045  Score=47.51  Aligned_cols=294  Identities=14%  Similarity=0.136  Sum_probs=173.9

Q ss_pred             HHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhc-cCChhHHH
Q 013228          106 LGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVH-SNDKEVMT  184 (447)
Q Consensus       106 L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~-~~~~~v~~  184 (447)
                      |.+|..+++..-+-+.+.+++..+...+ +.++.++.+..+..|...+... .....-..+.+|.++..++ ++++++..
T Consensus       266 LL~LLmHdSnAIDGFVk~DGv~~I~Tvi-nYpN~~l~RaG~KLLLQVSDak-sL~~t~L~e~LPFi~~~i~~h~eDdvvY  343 (619)
T 3c2g_A          266 LLGLLLHDSDAIDGFVRSDGVGAITTVV-QYPNNDLIRAGCKLLLQVSDAK-ALAKTPLENILPFLLRLIEIHPDDEVIY  343 (619)
T ss_dssp             HHHHHCCSHHHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHTTCG-GGGTSCCTTHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHhcccccccceeecccceeEEEEe-ecCCcHHHHhhhheeeeecchH-HHhhccccccchHHHHHhccCCCcceEE
Confidence            4445555555566677888899888888 7888899999999998887543 2222234778898888775 77899999


Q ss_pred             HHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-------CCchhHhHHHHHHHH-------hhc-------------
Q 013228          185 DACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH-------PSPSVLTRALQTVVN-------IAA-------------  237 (447)
Q Consensus       185 ~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-------~~~~v~~~a~~~l~~-------l~~-------------  237 (447)
                      ..-..++|...+.....+.-+..|.+..|...+..       .+..-+..||.+++|       +..             
T Consensus       344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~  423 (619)
T 3c2g_A          344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTA  423 (619)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCC
T ss_pred             ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccC
Confidence            99999999999888777777788999998887632       223334445554444       321             


Q ss_pred             CC--hhhHHHHHhcCChHHHHHhhccCC-----chhHHHHHHHHHHHHhcCC---HHHH----HHHHHcCChHHHHHHHh
Q 013228          238 GD--DFQTQCIINCGALPYLLGLLIHNH-----KKSIKTDACWTISNITAGN---SEHI----QAVIDAGLIGPLVNLLQ  303 (447)
Q Consensus       238 ~~--~~~~~~~~~~~~l~~l~~~l~~~~-----~~~v~~~a~~~l~nl~~~~---~~~~----~~l~~~~~~~~L~~~l~  303 (447)
                      +.  ..+...+++..++..|+..|+-+.     --++|.......--+.+..   .+..    ..+-+.+.+-.++-.+.
T Consensus       424 G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRTP~~Pkd~~l~VtDd~rk~NLvGHIciA~s  503 (619)
T 3c2g_A          424 GPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTPFVPKDGVLNVIDENRKENLIGHICAAYS  503 (619)
T ss_dssp             CHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTCTTSCCTTGGGCCCTTTCCCHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcCCCCchhhhccccchhhhhhhHHHHHHHHH
Confidence            01  123334566677778888775431     2345555544444333321   0100    01112333444433332


Q ss_pred             ----c-Cc-------hhHHHHHHHHHHHhcCCC-CHHHHHHHHHcCChHHHHhhccCC--CHHHHHHHHHHHHHHHHhhh
Q 013228          304 ----N-AE-------FDIKNWAARAISNATFGG-THEQIKYLVREGCIKPLCDLLLCA--DPEIVTVFLKGLEKILKVGE  368 (447)
Q Consensus       304 ----~-~~-------~~v~~~a~~aL~~l~~~~-~~~~~~~l~~~~~l~~L~~ll~~~--~~~~~~~a~~~l~~l~~~~~  368 (447)
                          . .+       ..+.+.+...|..+.... +..+...  ..-.++.=.++|++.  .|.....++..-.++++.++
T Consensus       504 Wa~~Q~tNertqdTkqQLiER~fSLL~~LmEQc~~E~qVAh--~~YsIsCPLnlLn~nQ~KP~FI~NVL~VcDKILeHcP  581 (619)
T 3c2g_A          504 WVFRQPNNTRTQSTKQQLVERTISLLLVLMEQCGAEKEVAQ--YSYSIDCPLNLLNGNQVKPTFIHNVLVVCDKILEHCP  581 (619)
T ss_dssp             HHHHSCCCTTTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH--TTTTSCCGGGGGSSCCCCHHHHHHHHHHHHHHHHHCT
T ss_pred             HhhcCccccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHh--heeeccCchhhhcccccChHHHHHHHHHHHHHHHhCc
Confidence                1 11       123344555555554322 2222111  112244445667664  46666667777777776655


Q ss_pred             hhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013228          369 AEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETY  418 (447)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~  418 (447)
                      ...             ....  ---..++-+.+|.|+|+.+.|..++.++
T Consensus       582 ~~A-------------d~W~--i~r~tle~l~NHsNsDIa~aasSLL~rf  616 (619)
T 3c2g_A          582 TRA-------------DIWT--IDRPMLEGLTNHRNSDIAKAANSLLSRF  616 (619)
T ss_dssp             THH-------------HHSC--CCHHHHHHHHTCSSHHHHHHHHHHHTTS
T ss_pred             chh-------------ccce--echHHHHHHhcCCCchHHHHHHHHHHhC
Confidence            432             1111  1134566778999999999999998876

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=97.39  E-value=0.019  Score=49.94  Aligned_cols=201  Identities=14%  Similarity=0.067  Sum_probs=145.1

Q ss_pred             HHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChh----hHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHH
Q 013228          202 QAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDF----QTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISN  277 (447)
Q Consensus       202 ~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~n  277 (447)
                      +.+...+.+..|+..|..-+.+.|+.+..+++++.+....    ....+..  -.+.+..++..-+++++-..+..+|..
T Consensus        72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRe  149 (341)
T 1upk_A           72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRE  149 (341)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHH
Confidence            4566779999999999998999999999999999865432    2333332  233444444433245666666666666


Q ss_pred             HhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHc---CChHHHHhhccCCCHHHHH
Q 013228          278 ITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVRE---GCIKPLCDLLLCADPEIVT  354 (447)
Q Consensus       278 l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~---~~l~~L~~ll~~~~~~~~~  354 (447)
                      ++.. +...+.++..+.+..+.+.++.++.++...|...+..+.... +.....++..   .+....-.++.+++.-++.
T Consensus       150 cir~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~H-k~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkR  227 (341)
T 1upk_A          150 CIRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRH-KLLSAEFLEQHYDRFFSEYEKLLHSENYVTKR  227 (341)
T ss_dssp             HHTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHH
T ss_pred             HHHh-HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcc-HHHHHHHHHHhHHHHHHHHHHHhcCCcchhHH
Confidence            6554 566777888888899999999999999999999999887763 3333344433   3466777899999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHH
Q 013228          355 VFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILE  416 (447)
Q Consensus       355 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~  416 (447)
                      .+++.|+.++-...+...          ..+.+.+..-++.+..|+.+++..++-.|=.+..
T Consensus       228 QSlKLLgelLldr~N~~v----------M~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFK  279 (341)
T 1upk_A          228 QSLKLLGELLLDRHNFTI----------MTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFK  279 (341)
T ss_dssp             HHHHHHHHHHHSGGGHHH----------HHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCchHHHH----------HHHHhCCHHHHHHHHHHhcCchhchhhhhhhhee
Confidence            999999999976554332          3455556667888889999988888777666544

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=97.39  E-value=0.063  Score=55.54  Aligned_cols=314  Identities=12%  Similarity=0.118  Sum_probs=167.0

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHH-HHhhCCCCHHHHHHHHHHHHHhhcC-ChhHHH
Q 013228           41 VPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIF-VKLLASPSDDIREQAVCALGNVAAD-SARCRD  118 (447)
Q Consensus        41 v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L-~~ll~~~~~~i~~~a~~~L~~l~~~-~~~~~~  118 (447)
                      ++.+..+|+.+.++++...++.+|+.+...-+  ...+++.+.++.+ ..++  +++.++..|+.+|..+... .+.+.+
T Consensus       208 l~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~--i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~  283 (1073)
T 3gjx_A          208 FQLCQFVMENSQNAPLVHATLETLLRFLNWIP--LGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEE  283 (1073)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHH
T ss_pred             HHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC--HHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHH
Confidence            33344455444448888889999999987432  4567788888888 4666  4689999999999998854 222222


Q ss_pred             HHHh--cCCHHHHHHHhc------------cccchhHHHHHHHHHHHhcCCCC-----C-CChhhHhhhHHHHHHhhccC
Q 013228          119 LVLS--EEALIPLLTQLN------------KHAKLSMLRIATWTLSNFCAGKP-----K-PIFDQVRPALPALAQLVHSN  178 (447)
Q Consensus       119 ~~~~--~~~l~~l~~~l~------------~~~~~~~~~~a~~~L~~l~~~~~-----~-~~~~~~~~~l~~l~~ll~~~  178 (447)
                      .+..  ...+..+-..+.            ...|.+.....+..+..+.....     . ........++..++.+-..+
T Consensus       284 ~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~  363 (1073)
T 3gjx_A          284 QFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVE  363 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCC
Confidence            2211  011111111111            22234555555556555443220     0 01112233444556666677


Q ss_pred             ChhHHHHHHHHHHHhccC----C------------------cHHHHHHHH---hCcHHHHHHhcCCCCc----------h
Q 013228          179 DKEVMTDACRALFYLSEG----T------------------NDEIQAVIE---AGVCPRLVELLGHPSP----------S  223 (447)
Q Consensus       179 ~~~v~~~al~~l~~l~~~----~------------------~~~~~~~~~---~~~~~~L~~lL~~~~~----------~  223 (447)
                      +.++.+.++..-..+...    .                  ..+ ..+..   ..+...++..+..+.+          .
T Consensus       364 d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~-~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~  442 (1073)
T 3gjx_A          364 ETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPR-RQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEV  442 (1073)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHH-HHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCE
T ss_pred             cHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhH-HHHHHHHHHHHHHHHHHhcCCCccccccCcccchH
Confidence            888877776654444321    0                  011 11111   1233344444543321          0


Q ss_pred             hHh------------HHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccC-CchhHHHHHHHHHHHHhcC-CHHHHHHH
Q 013228          224 VLT------------RALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHN-HKKSIKTDACWTISNITAG-NSEHIQAV  289 (447)
Q Consensus       224 v~~------------~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~~~v~~~a~~~l~nl~~~-~~~~~~~l  289 (447)
                      +|.            ..-.++..++.........+    .++.+.+.+..+ -+......++|+++.++.. .++.-..+
T Consensus       443 ~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~  518 (1073)
T 3gjx_A          443 VREFMKDTDSINLYKNMRETLVYLTHLDYVDTEII----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRF  518 (1073)
T ss_dssp             EEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHH----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHH
T ss_pred             HHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccch
Confidence            111            11112222222111111111    223344333332 2588899999999999753 32222222


Q ss_pred             HHcCChHHHHHHHhcC---c--hhHHHHHHHHHHHhcCC--CCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHH
Q 013228          290 IDAGLIGPLVNLLQNA---E--FDIKNWAARAISNATFG--GTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEK  362 (447)
Q Consensus       290 ~~~~~~~~L~~~l~~~---~--~~v~~~a~~aL~~l~~~--~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~  362 (447)
                      +- .+++.|+.+....   +  ..++...+++++.....  ..++..+.     ++..|.+.+.+.++.++..|+.++..
T Consensus       519 Lp-~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~-----vl~~L~~~m~~~~~~vq~aA~~af~~  592 (1073)
T 3gjx_A          519 LV-TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT-----VVNKLFEFMHETHDGVQDMACDTFIK  592 (1073)
T ss_dssp             HH-HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTCCSTTHHHHHHHHHHH
T ss_pred             HH-HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            22 2677777776643   2  23455566788776543  12333332     57788888888999999999999999


Q ss_pred             HHHhhhh
Q 013228          363 ILKVGEA  369 (447)
Q Consensus       363 l~~~~~~  369 (447)
                      ++..+..
T Consensus       593 i~~~C~~  599 (1073)
T 3gjx_A          593 IAQKCRR  599 (1073)
T ss_dssp             HHHHTGG
T ss_pred             HHHHHHH
Confidence            9987765

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=97.36  E-value=0.051  Score=47.28  Aligned_cols=240  Identities=10%  Similarity=0.114  Sum_probs=164.1

Q ss_pred             hhhHHHHHHhhccCChhHHHHHHHHHHHhccCCc----HHHHHHHH-hCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCC
Q 013228          165 RPALPALAQLVHSNDKEVMTDACRALFYLSEGTN----DEIQAVIE-AGVCPRLVELLGHPSPSVLTRALQTVVNIAAGD  239 (447)
Q Consensus       165 ~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~----~~~~~~~~-~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~  239 (447)
                      .+.+..|+..|..-+-+.+..+..++.++.....    .....+.. ..++..|+..-  .++++...+-..|..++. .
T Consensus        77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--e~~diAl~~G~mLRecir-~  153 (341)
T 1upk_A           77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRECIR-H  153 (341)
T ss_dssp             HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHHHT-S
T ss_pred             hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh--ccchhHhHHHHHHHHHHH-h
Confidence            5678888888888899999999999998886543    22333332 12333333333  344555555555554444 5


Q ss_pred             hhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcC---ChHHHHHHHhcCchhHHHHHHHH
Q 013228          240 DFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAG---LIGPLVNLLQNAEFDIKNWAARA  316 (447)
Q Consensus       240 ~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~---~~~~L~~~l~~~~~~v~~~a~~a  316 (447)
                      +...+.++..+.+..+.+.+..+ +-++...|..++..+....+.....++..+   ++...-.++.++++-+|+.++..
T Consensus       154 e~la~~iL~~~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKL  232 (341)
T 1upk_A          154 EPLAKIILWSEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKL  232 (341)
T ss_dssp             HHHHHHHHHSGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHhcCC-CchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence            66777788888888899999998 999999999999988776666666666533   57777888999999999999999


Q ss_pred             HHHhcCCC-CHHH-HHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHH--hch
Q 013228          317 ISNATFGG-THEQ-IKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEE--AEG  392 (447)
Q Consensus       317 L~~l~~~~-~~~~-~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~  392 (447)
                      |+.+.... +... ..++.+..-+..++.+|++....++..|..++.-++.+..+.          .++..++..  ...
T Consensus       233 LgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~----------~~I~~IL~~Nr~kL  302 (341)
T 1upk_A          233 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKT----------QPILDILLKNQAKL  302 (341)
T ss_dssp             HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCC----------HHHHHHHHHTHHHH
T ss_pred             HHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCC----------hHHHHHHHHHHHHH
Confidence            99998742 2222 233334455888999999999999999999998888765443          234555542  344


Q ss_pred             HHHHHHHhcCC--CHHHHHHHHHHHHHh
Q 013228          393 LEKIENLRSHD--NDEIHEKSVKILETY  418 (447)
Q Consensus       393 ~~~l~~l~~~~--~~~v~~~a~~~l~~~  418 (447)
                      ++.|.++....  ++...+.-..++...
T Consensus       303 l~fl~~f~~d~~eDeqF~dEK~~lI~~I  330 (341)
T 1upk_A          303 IEFLSKFQNDRTEDEQFNDEKTYLVKQI  330 (341)
T ss_dssp             HHHHHHTTTTC-CCSHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCcchhhHHHHHHHHHHHH
Confidence            56666665544  333433333344443

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=97.34  E-value=0.01  Score=49.30  Aligned_cols=188  Identities=12%  Similarity=0.120  Sum_probs=126.3

Q ss_pred             ChhHHHHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHhc-------CCCCc--hh---HhHHHHHHHHhhcCChhhHHH
Q 013228          179 DKEVMTDACRALFYLSEGTNDEIQAVIEA-GVCPRLVELL-------GHPSP--SV---LTRALQTVVNIAAGDDFQTQC  245 (447)
Q Consensus       179 ~~~v~~~al~~l~~l~~~~~~~~~~~~~~-~~~~~L~~lL-------~~~~~--~v---~~~a~~~l~~l~~~~~~~~~~  245 (447)
                      +++.++.|+.-|+.--+.-++..-.+..+ |.+..|++=+       ..+.-  ..   .-.|+..+..++. +++.+..
T Consensus        14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAs-hpetr~~   92 (268)
T 2fv2_A           14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVAS-HPETRSA   92 (268)
T ss_dssp             STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHH-CTTTHHH
T ss_pred             CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHc-CcchhhH
Confidence            45567777777766544444443344444 6555554332       22221  11   2334444555565 5556778


Q ss_pred             HHhcCChHHHHHhhccCC----chhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHh
Q 013228          246 IINCGALPYLLGLLIHNH----KKSIKTDACWTISNITA-GNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNA  320 (447)
Q Consensus       246 ~~~~~~l~~l~~~l~~~~----~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l  320 (447)
                      ++++++.-.|..+|....    -+.+|-.+.++++.+.. ++++.+..+++.+++|..++.++.++.-.+.-|...+..+
T Consensus        93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI  172 (268)
T 2fv2_A           93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI  172 (268)
T ss_dssp             HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            999999888888887542    35788899999999986 6789999999999999999999999999999999999888


Q ss_pred             cCCCCHHHHHHHHH--------cCChHHHHh-hccCCCHHHHHHHHHHHHHHHHhhhh
Q 013228          321 TFGGTHEQIKYLVR--------EGCIKPLCD-LLLCADPEIVTVFLKGLEKILKVGEA  369 (447)
Q Consensus       321 ~~~~~~~~~~~l~~--------~~~l~~L~~-ll~~~~~~~~~~a~~~l~~l~~~~~~  369 (447)
                      ...  .....++..        ..++..++. +.+++++.+.+.++.+..++.++...
T Consensus       173 L~d--d~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~ra  228 (268)
T 2fv2_A          173 LLD--DTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRA  228 (268)
T ss_dssp             HHS--HHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHH
T ss_pred             hcc--chhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHH
Confidence            773  344443322        123333333 44567888999999988888766543

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=97.31  E-value=0.00011  Score=62.05  Aligned_cols=185  Identities=15%  Similarity=0.112  Sum_probs=125.0

Q ss_pred             HhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCC
Q 013228           46 EFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEA  125 (447)
Q Consensus        46 ~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~  125 (447)
                      .++.+++ +.+|..++..+                  ....+..++.++++.+|..++..|.                  
T Consensus        57 ~ll~d~~-~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L~------------------   99 (244)
T 1lrv_A           57 QYLADPF-WERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRLP------------------   99 (244)
T ss_dssp             GGTTCSS-HHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTSC------------------
T ss_pred             HHhcCCC-HHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHCC------------------
Confidence            4456777 89998888743                  1234677888899999998886421                  


Q ss_pred             HHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHH
Q 013228          126 LIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVI  205 (447)
Q Consensus       126 l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~  205 (447)
                      .+.+..++ .+++..++..++..+   .              .+.+..+++++++.|+..+...   +.           
T Consensus       100 ~~~L~~ll-~D~d~~VR~~aA~~l---~--------------~~~L~~L~~D~d~~VR~~aA~~---l~-----------  147 (244)
T 1lrv_A          100 REQLSALM-FDEDREVRITVADRL---P--------------LEQLEQMAADRDYLVRAYVVQR---IP-----------  147 (244)
T ss_dssp             SGGGGGTT-TCSCHHHHHHHHHHS---C--------------TGGGGGGTTCSSHHHHHHHHHH---SC-----------
T ss_pred             HHHHHHHH-cCCCHHHHHHHHHhC---C--------------HHHHHHHHcCCCHHHHHHHHHh---cC-----------
Confidence            12233344 788888888877642   1              0135566788899999888762   11           


Q ss_pred             HhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHH
Q 013228          206 EAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEH  285 (447)
Q Consensus       206 ~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~  285 (447)
                          .+.+..+++++++.||..++..+                  ..+.+..++.++ ++.||..++..+          
T Consensus       148 ----~~~l~~l~~D~d~~VR~~aa~~l------------------~~~ll~~ll~D~-d~~VR~aaa~~l----------  194 (244)
T 1lrv_A          148 ----PGRLFRFMRDEDRQVRKLVAKRL------------------PEESLGLMTQDP-EPEVRRIVASRL----------  194 (244)
T ss_dssp             ----GGGGGGTTTCSCHHHHHHHHHHS------------------CGGGGGGSTTCS-SHHHHHHHHHHC----------
T ss_pred             ----HHHHHHHHcCCCHHHHHHHHHcC------------------CHHHHHHHHcCC-CHHHHHHHHHhC----------
Confidence                12345677888999998887741                  113455677777 999999887642          


Q ss_pred             HHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHH
Q 013228          286 IQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGL  360 (447)
Q Consensus       286 ~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l  360 (447)
                              ..+.|..++.++++.||..++..+.                   .+.|..+ .++++.++..+...|
T Consensus       195 --------~~~~L~~Ll~D~d~~VR~~aa~~l~-------------------~~~L~~L-~D~~~~VR~aa~~~L  241 (244)
T 1lrv_A          195 --------RGDDLLELLHDPDWTVRLAAVEHAS-------------------LEALREL-DEPDPEVRLAIAGRL  241 (244)
T ss_dssp             --------CGGGGGGGGGCSSHHHHHHHHHHSC-------------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred             --------CHHHHHHHHcCCCHHHHHHHHHcCC-------------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence                    2355777788889999999888752                   2445556 888888888876543

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=97.23  E-value=9.5e-05  Score=62.51  Aligned_cols=65  Identities=11%  Similarity=0.022  Sum_probs=40.1

Q ss_pred             ccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCC
Q 013228            3 AGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHG   82 (447)
Q Consensus         3 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~   82 (447)
                      .+++++++.++..++..+.                   ...+..++++++ +.||..++..|.                 
T Consensus        57 ~ll~d~~~~VR~~AA~~l~-------------------~~~l~~L~~D~~-~~VR~~aA~~L~-----------------   99 (244)
T 1lrv_A           57 QYLADPFWERRAIAVRYSP-------------------VEALTPLIRDSD-EVVRRAVAYRLP-----------------   99 (244)
T ss_dssp             GGTTCSSHHHHHHHHTTSC-------------------GGGGGGGTTCSS-HHHHHHHHTTSC-----------------
T ss_pred             HHhcCCCHHHHHHHHHhCC-------------------HHHHHHHccCcC-HHHHHHHHHHCC-----------------
Confidence            3557778888888877430                   122556666777 777777775320                 


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHH
Q 013228           83 AVPIFVKLLASPSDDIREQAVCA  105 (447)
Q Consensus        83 ~i~~L~~ll~~~~~~i~~~a~~~  105 (447)
                       .+.|..++.++++.+|..++..
T Consensus       100 -~~~L~~ll~D~d~~VR~~aA~~  121 (244)
T 1lrv_A          100 -REQLSALMFDEDREVRITVADR  121 (244)
T ss_dssp             -SGGGGGTTTCSCHHHHHHHHHH
T ss_pred             -HHHHHHHHcCCCHHHHHHHHHh
Confidence             1345566667777777766653

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=97.12  E-value=0.3  Score=50.66  Aligned_cols=98  Identities=10%  Similarity=0.100  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHHcCCChh--hHHHHHhCCChHHHHHhhCCC-----CHHHHHHHHHHHHHhhcCChhHHHHHHhcCCH
Q 013228           54 PQLQFEAAWALKNIVSGTSE--DTKVVIDHGAVPIFVKLLASP-----SDDIREQAVCALGNVAADSARCRDLVLSEEAL  126 (447)
Q Consensus        54 ~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~~i~~L~~ll~~~-----~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l  126 (447)
                      ....+.++|+++.++..-.+  ....+.  .+++.|+.+.+.+     ...++...+|+++..+..-....+.+.  .++
T Consensus       493 W~~lea~~~aigaIag~~~~~~E~~~Lp--~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~--~vl  568 (1073)
T 3gjx_A          493 WKNLNTLCWAIGSISGAMHEEDEKRFLV--TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLK--TVV  568 (1073)
T ss_dssp             HHHHHHHHHHHHHTTTSSCHHHHHHHHH--HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH--HHH
T ss_pred             HHHHhHHHHHHHHHHCcCCcccccchHH--HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHH--HHH
Confidence            68899999999999864332  222232  3577777776543     234555566888887643221112211  135


Q ss_pred             HHHHHHhccccchhHHHHHHHHHHHhcCCC
Q 013228          127 IPLLTQLNKHAKLSMLRIATWTLSNFCAGK  156 (447)
Q Consensus       127 ~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~  156 (447)
                      ..+++.+ .++++.++..|+.++..+|...
T Consensus       569 ~~L~~~m-~~~~~~vq~aA~~af~~i~~~C  597 (1073)
T 3gjx_A          569 NKLFEFM-HETHDGVQDMACDTFIKIAQKC  597 (1073)
T ss_dssp             HHHHHHT-TCCSTTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHH-hcCCHHHHHHHHHHHHHHHHHH
Confidence            5566665 5667899999999999998764

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=97.11  E-value=0.042  Score=45.66  Aligned_cols=190  Identities=15%  Similarity=0.086  Sum_probs=119.6

Q ss_pred             chhHhHHHHHHHHhhcCChhhHHHHHhc-CChHHHHHh-------hccCC-chhHHHHHHHH---HHHHhcCCHHHHHHH
Q 013228          222 PSVLTRALQTVVNIAAGDDFQTQCIINC-GALPYLLGL-------LIHNH-KKSIKTDACWT---ISNITAGNSEHIQAV  289 (447)
Q Consensus       222 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~-~~l~~l~~~-------l~~~~-~~~v~~~a~~~---l~nl~~~~~~~~~~l  289 (447)
                      ++.|+.|+..|+.=-...++..-.+..+ |.+..|++=       +..+. ....-..+|.+   +..+++ .++.+..+
T Consensus        15 p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAs-hpetr~~F   93 (268)
T 2fv2_A           15 PETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVAS-HPETRSAF   93 (268)
T ss_dssp             TTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHH-CTTTHHHH
T ss_pred             chhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHc-CcchhhHH
Confidence            3456666666655333334343444443 334443322       22210 11222333333   345554 56888899


Q ss_pred             HHcCChHHHHHHHhcC-----chhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHH
Q 013228          290 IDAGLIGPLVNLLQNA-----EFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKIL  364 (447)
Q Consensus       290 ~~~~~~~~L~~~l~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~  364 (447)
                      ++.++.-.|..+++..     .+.+|..+..+++.+...++++...++.+.++++...+.++.++.--+..|..++.+++
T Consensus        94 l~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL  173 (268)
T 2fv2_A           94 LAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKIL  173 (268)
T ss_dssp             HHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHh
Confidence            9998888888888743     36789999999999999999999999999999999999999999988899999999999


Q ss_pred             HhhhhhhhhhhhcccccHHHHHHHHhchHH-HHHHHhcCCCHHHHHHHHHHHHHh
Q 013228          365 KVGEAEKNMDIAIGDVNQYAQLVEEAEGLE-KIENLRSHDNDEIHEKSVKILETY  418 (447)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~l~~l~~~~~~~v~~~a~~~l~~~  418 (447)
                      ..+....-.+.      ..-+...-...+. .+..+..++++.+.+...++.-++
T Consensus       174 ~dd~GL~YiC~------t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRL  222 (268)
T 2fv2_A          174 LDDTGLAYICQ------TYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRL  222 (268)
T ss_dssp             HSHHHHHHHTS------SHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHc------cHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence            87766543322      1111111112222 233456677877765544444443

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=96.95  E-value=0.23  Score=45.53  Aligned_cols=248  Identities=10%  Similarity=0.030  Sum_probs=146.9

Q ss_pred             CCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHH
Q 013228           50 REDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPL  129 (447)
Q Consensus        50 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l  129 (447)
                      .++ +..+..|+..+.......|+..+.     ++..++.+.++.+..||.+|++.|..+|.+ ... ..     +...|
T Consensus        39 kg~-~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i-~k-----iaDvL  105 (507)
T 3u0r_A           39 KGG-TKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENL-PR-----VADIL  105 (507)
T ss_dssp             GSC-HHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCH-HH-----HHHHH
T ss_pred             CCC-HHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhh-hh-----HHHHH
Confidence            445 799999999999999988887664     567899999999999999999999999987 322 22     35678


Q ss_pred             HHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccC-CcHHHHHHHHhC
Q 013228          130 LTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEG-TNDEIQAVIEAG  208 (447)
Q Consensus       130 ~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~-~~~~~~~~~~~~  208 (447)
                      +++| +..+..-...+-.+|..+...++       .+.+..+..-+..+++.+++.++..|..-... ..+....-.+.-
T Consensus       106 ~QlL-qtdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~  177 (507)
T 3u0r_A          106 TQLL-QTDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEEL  177 (507)
T ss_dssp             HHHT-TCCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHH
T ss_pred             HHHH-hccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHH
Confidence            8888 45554445555555555554321       44555566666667899999999888644421 111111122233


Q ss_pred             cHHHHHHhcCCCCchhHhHHHHHHHHhhcCC-hhhHHHHHhcCChHHHHHhh------ccCCchhHHHHHHHHHHHHh--
Q 013228          209 VCPRLVELLGHPSPSVLTRALQTVVNIAAGD-DFQTQCIINCGALPYLLGLL------IHNHKKSIKTDACWTISNIT--  279 (447)
Q Consensus       209 ~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~-~~~~~~~~~~~~l~~l~~~l------~~~~~~~v~~~a~~~l~nl~--  279 (447)
                      ++..+.+.|.+-...--...+.+|..+-... ....+.+     ++.+....      ... +.+.......|+....  
T Consensus       178 i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeL-----v~ii~eQa~L~~~f~~s-D~e~vdRlI~C~~~ALP~  251 (507)
T 3u0r_A          178 ILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQL-----VELVAEQADLEQTFNPS-DPDCVDRLLQCTRQAVPL  251 (507)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHH-----HHHHHHHHTTTSCCCSS-CHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHH-----HHHHHHHHhccCCCCCc-CHHHHHHHHHHHHHHHHH
Confidence            4566667776544444444555555543322 2222222     23333332      212 4444444444443322  


Q ss_pred             --c--CCHHHHHHHHHcCChHHHHHHHhcC-chhHHHHHHHHHHHhcCCCC
Q 013228          280 --A--GNSEHIQAVIDAGLIGPLVNLLQNA-EFDIKNWAARAISNATFGGT  325 (447)
Q Consensus       280 --~--~~~~~~~~l~~~~~~~~L~~~l~~~-~~~v~~~a~~aL~~l~~~~~  325 (447)
                        .  .+.....++.+. ++|.+-.+-... .++.+...+.++..++....
T Consensus       252 FS~~v~StkFv~y~~~k-IlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~  301 (507)
T 3u0r_A          252 FSKNVHSTRFVTYFCEQ-VLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCG  301 (507)
T ss_dssp             CBTTBCCHHHHHHHHHH-TGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCC
T ss_pred             hccCCChHHHHHHHHHh-hccchhhccccccchHHHHHHHHHHHHHccCCC
Confidence              1  244555555554 777554333321 23477788888888887654

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=96.92  E-value=0.014  Score=49.10  Aligned_cols=162  Identities=15%  Similarity=0.104  Sum_probs=111.2

Q ss_pred             hhHHHHHhcCChHHHHHhhcc----------CCchhHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHHHhcCchhH
Q 013228          241 FQTQCIINCGALPYLLGLLIH----------NHKKSIKTDACWTISNITAGNSEHIQAVID-AGLIGPLVNLLQNAEFDI  309 (447)
Q Consensus       241 ~~~~~~~~~~~l~~l~~~l~~----------~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-~~~~~~L~~~l~~~~~~v  309 (447)
                      ...+.+ ..+++..|+.+|..          ..+......++.||..+.. +......++. .+.+..+...+.++++.+
T Consensus        35 ~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~  112 (233)
T 2f31_A           35 SWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNM  112 (233)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSHHHHHHTTCCTTSHHH
T ss_pred             HHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHHHHHHHHHhCCCCchH
Confidence            444555 34666666666632          1134667788888888855 4556666665 557888888888889999


Q ss_pred             HHHHHHHHHHhcCCCCH----H-HHH------HHHHcCChHHHHhhccC-CCHHHHHHHHHHHHHHHHhhhhhhhhhhhc
Q 013228          310 KNWAARAISNATFGGTH----E-QIK------YLVREGCIKPLCDLLLC-ADPEIVTVFLKGLEKILKVGEAEKNMDIAI  377 (447)
Q Consensus       310 ~~~a~~aL~~l~~~~~~----~-~~~------~l~~~~~l~~L~~ll~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~  377 (447)
                      +..++..|..++....+    + ...      ..-+..-...+++.++. .+.+....++..+..++...+......   
T Consensus       113 r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~---  189 (233)
T 2f31_A          113 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRV---  189 (233)
T ss_dssp             HHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHH---
T ss_pred             HHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHH---
Confidence            99999888877765431    1 111      11233456778887874 566888889988999988766544322   


Q ss_pred             ccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHH
Q 013228          378 GDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKS  411 (447)
Q Consensus       378 ~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a  411 (447)
                          .++..|...|..+.+..+...+++++...-
T Consensus       190 ----~lR~ef~~~Gl~~il~~l~~~~~~~L~~Qi  219 (233)
T 2f31_A          190 ----HIRSELMRLGLHQVLQELREIENEDMKVQL  219 (233)
T ss_dssp             ----HHHHHHHHTTHHHHHHHHHHCCCHHHHHHH
T ss_pred             ----HHHHHHHHCChHHHHHHHhccCCHHHHHHH
Confidence                267888899999999999998998876553

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=96.68  E-value=0.071  Score=43.95  Aligned_cols=144  Identities=16%  Similarity=0.081  Sum_probs=102.8

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhc-CChhHHH
Q 013228           41 VPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVK-LLASPSDDIREQAVCALGNVAA-DSARCRD  118 (447)
Q Consensus        41 v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-ll~~~~~~i~~~a~~~L~~l~~-~~~~~~~  118 (447)
                      ++....+.+++. .++|..|+..|+.. ...+         ..++.+.. +..+++..|++.+..++..++. ..++   
T Consensus        73 ~~la~~L~~~~~-deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---  138 (240)
T 3l9t_A           73 KKLAFLAYQSDV-YQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---  138 (240)
T ss_dssp             HHHHHHHHTCSS-HHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---
T ss_pred             HHHHHHHHhCcc-hHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---
Confidence            344445566777 79999999998888 3111         24566666 5566889999999999999984 3332   


Q ss_pred             HHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCc
Q 013228          119 LVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTN  198 (447)
Q Consensus       119 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~  198 (447)
                           ..++.+..-. .+++..+++.|...+.--+.. + ........++|.+-.+..+++.-|+....+.|..++...+
T Consensus       139 -----~~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P  210 (240)
T 3l9t_A          139 -----KALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP  210 (240)
T ss_dssp             -----TTHHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred             -----HHHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence                 1345555555 888999999998877554432 1 1122235678888888889999999999999999998888


Q ss_pred             HHHHHHHH
Q 013228          199 DEIQAVIE  206 (447)
Q Consensus       199 ~~~~~~~~  206 (447)
                      +....+++
T Consensus       211 d~V~~~~~  218 (240)
T 3l9t_A          211 DLVKIELK  218 (240)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77665554

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=96.45  E-value=0.058  Score=48.94  Aligned_cols=162  Identities=15%  Similarity=0.081  Sum_probs=113.5

Q ss_pred             hhhHHHHHhcCChHHHHHhhcc----------CCchhHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHHHhcCchh
Q 013228          240 DFQTQCIINCGALPYLLGLLIH----------NHKKSIKTDACWTISNITAGNSEHIQAVID-AGLIGPLVNLLQNAEFD  308 (447)
Q Consensus       240 ~~~~~~~~~~~~l~~l~~~l~~----------~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-~~~~~~L~~~l~~~~~~  308 (447)
                      ....+.+. .+++..|+.+|..          ..+......++.||..+... ......++. ...+..+...+.+..+.
T Consensus       100 ~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~-~~G~~~vl~~~~~i~~l~~~L~s~~~~  177 (383)
T 3eg5_B          100 VSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPN  177 (383)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSS-HHHHHHHHTCSSHHHHHHHTCCTTSHH
T ss_pred             cHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcc-hhhHHHHHcChHHHHHHHHHhCCCchH
Confidence            34455555 4667777777631          11346778888899888554 456666665 55788899988889999


Q ss_pred             HHHHHHHHHHHhcCCCCHHH-HHH----------HHHcCChHHHHhhccC-CCHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 013228          309 IKNWAARAISNATFGGTHEQ-IKY----------LVREGCIKPLCDLLLC-ADPEIVTVFLKGLEKILKVGEAEKNMDIA  376 (447)
Q Consensus       309 v~~~a~~aL~~l~~~~~~~~-~~~----------l~~~~~l~~L~~ll~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~  376 (447)
                      ++..|...|.-++....++. ...          ..+..-...++..++. .+.+....++..+..++...+......  
T Consensus       178 ~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~--  255 (383)
T 3eg5_B          178 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRV--  255 (383)
T ss_dssp             HHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHH--
T ss_pred             HHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHH--
Confidence            99999999988887543111 111          1234557788888887 567888888988999988765544322  


Q ss_pred             cccccHHHHHHHHhchHHHHHHHhcCCCHHHHHH
Q 013228          377 IGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEK  410 (447)
Q Consensus       377 ~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~  410 (447)
                           .++..|...|..+.+..+...+++++...
T Consensus       256 -----~lR~ef~~~Gl~~il~~lr~~~~~~L~~Q  284 (383)
T 3eg5_B          256 -----HIRSELMRLGLHQVLQELREIENEDMKVQ  284 (383)
T ss_dssp             -----HHHHHHHHTTHHHHHHHHTTSCCHHHHHH
T ss_pred             -----HHHHHHHHCChHHHHHHHhcCCChhHHHH
Confidence                 25778889999999999988888877543

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=96.34  E-value=0.035  Score=48.20  Aligned_cols=173  Identities=17%  Similarity=0.251  Sum_probs=118.8

Q ss_pred             HHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHH
Q 013228          190 LFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKT  269 (447)
Q Consensus       190 l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~  269 (447)
                      +.++..++++.+..+++..++..+...+..++.++.+..+..+-..+.... .+..- -...+|.++..+.-..+.++..
T Consensus       266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaks-L~~t~-L~e~LPFi~~~i~~h~eDdvvY  343 (619)
T 3c2g_A          266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKA-LAKTP-LENILPFLLRLIEIHPDDEVIY  343 (619)
T ss_dssp             HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGG-GGTSC-CTTHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHH-Hhhcc-ccccchHHHHHhccCCCcceEE
Confidence            345666788888999999999999999999999999999999988775332 11111 1246788888776443889999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-------chhHHHHHHHHHHH-------hcC------CC-----
Q 013228          270 DACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNA-------EFDIKNWAARAISN-------ATF------GG-----  324 (447)
Q Consensus       270 ~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~-------~~~v~~~a~~aL~~-------l~~------~~-----  324 (447)
                      ...+.|+|...+.....+..+..|.++.|...+...       +..-+..|+..++|       +..      ++     
T Consensus       344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~  423 (619)
T 3c2g_A          344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTA  423 (619)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCC
T ss_pred             ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccC
Confidence            999999999998877777778899999999887631       23334455555544       332      11     


Q ss_pred             ---CHHHHHHHHHcCChHHHHhhccCCC---H---HHHHHHHHHHHHHH
Q 013228          325 ---THEQIKYLVREGCIKPLCDLLLCAD---P---EIVTVFLKGLEKIL  364 (447)
Q Consensus       325 ---~~~~~~~l~~~~~l~~L~~ll~~~~---~---~~~~~a~~~l~~l~  364 (447)
                         +..+...+++.+++..|+.+|+-+.   +   +++...+..+.-+.
T Consensus       424 G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~Lvl  472 (619)
T 3c2g_A          424 GPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLL  472 (619)
T ss_dssp             CHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHh
Confidence               2234455666678888888886432   2   44544444443333

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=96.33  E-value=0.24  Score=43.18  Aligned_cols=173  Identities=12%  Similarity=0.073  Sum_probs=104.1

Q ss_pred             CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChH----HHHHhhCC-CCHHHHHHHHHHHHHhhcCCh
Q 013228           40 VVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVP----IFVKLLAS-PSDDIREQAVCALGNVAADSA  114 (447)
Q Consensus        40 ~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~----~L~~ll~~-~~~~i~~~a~~~L~~l~~~~~  114 (447)
                      .+..+.++++-+.  +.+.-++..+.-++. ++.....+.+.+.-.    .+...+.+ ..+..+-.++++++|+.....
T Consensus       104 ~l~~l~kil~WP~--~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~  180 (304)
T 3ebb_A          104 QLQILWKAINCPE--DIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA  180 (304)
T ss_dssp             HHHHHHHHHTSCT--TTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH
T ss_pred             HHHHHHHHHcCCH--HhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch
Confidence            3566667664444  556677777777666 566555555433223    33344433 356678899999999987765


Q ss_pred             hHHHHHHhcCCHHHHHHHhc---cccchhHHHHHHHHHHHhcCCC-CCCChhhHhhhHHHHHHhhc-cCChhHHHHHHHH
Q 013228          115 RCRDLVLSEEALIPLLTQLN---KHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLVH-SNDKEVMTDACRA  189 (447)
Q Consensus       115 ~~~~~~~~~~~l~~l~~~l~---~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~l~~ll~-~~~~~v~~~al~~  189 (447)
                       .+..+...  ...++..+.   .+.+..++..++..+.|++... ..........++..+..+++ ..|.+....++.+
T Consensus       181 -g~~~l~~~--~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvA  257 (304)
T 3ebb_A          181 -GQKLMMSQ--RESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVA  257 (304)
T ss_dssp             -HHHHHHHT--HHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             -hHHHHHHH--HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence             45555432  344444432   3457788888888888887543 11122223345555556664 3588999999999


Q ss_pred             HHHhccCCcHHHHHHHHh-CcHHHHHHhcCC
Q 013228          190 LFYLSEGTNDEIQAVIEA-GVCPRLVELLGH  219 (447)
Q Consensus       190 l~~l~~~~~~~~~~~~~~-~~~~~L~~lL~~  219 (447)
                      ++++...+.+. ..+.+. ++-..+-+....
T Consensus       258 LGtL~~~~~~~-~~lak~l~~~~~v~~~~~~  287 (304)
T 3ebb_A          258 LGTLISDDSNA-VQLAKSLGVDSQIKKYSSV  287 (304)
T ss_dssp             HHHHHTTCHHH-HHHHHHTTHHHHGGGGGGC
T ss_pred             HHHHHhCChhH-HHHHHHcCHHHHHHHHHhC
Confidence            99999765543 334443 444444444443

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=96.31  E-value=0.17  Score=46.36  Aligned_cols=122  Identities=17%  Similarity=0.205  Sum_probs=88.3

Q ss_pred             cchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHh
Q 013228          137 AKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVEL  216 (447)
Q Consensus       137 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~l  216 (447)
                      .+...++-|+..+.......|.    .....+..++.++.+.|..||..|++.|-.+|..  +...     .+...|.++
T Consensus        40 g~~k~K~LaaQ~I~kffk~FP~----l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~-----kiaDvL~Ql  108 (507)
T 3u0r_A           40 GGTKEKRLAAQFIPKFFKHFPE----LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLP-----RVADILTQL  108 (507)
T ss_dssp             SCHHHHHHHHHHHHHHGGGCGG----GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHH-----HHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhChh----hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhh-----hHHHHHHHH
Confidence            3578888899999888876543    3366788899999999999999999999999976  2222     457889999


Q ss_pred             cCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHH
Q 013228          217 LGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNI  278 (447)
Q Consensus       217 L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl  278 (447)
                      |..+++.-...+-.+|..+...++..        .+..+..-+.++ ++.+|..+...|..-
T Consensus       109 Lqtdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~-~e~~Rer~lkFi~~k  161 (507)
T 3u0r_A          109 LQTDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQG-EDIVRERAIKFLSTK  161 (507)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHS-CHHHHHHHHHHHHHH
T ss_pred             HhccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHccc-chHHHHHHHHHHHHH
Confidence            99888777666666676666555422        233344444445 678888877777543

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=95.98  E-value=0.27  Score=44.66  Aligned_cols=161  Identities=14%  Similarity=0.075  Sum_probs=109.8

Q ss_pred             hhHHHHHhcCChHHHHHhhcc----C------CchhHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHHHhcCchhH
Q 013228          241 FQTQCIINCGALPYLLGLLIH----N------HKKSIKTDACWTISNITAGNSEHIQAVID-AGLIGPLVNLLQNAEFDI  309 (447)
Q Consensus       241 ~~~~~~~~~~~l~~l~~~l~~----~------~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-~~~~~~L~~~l~~~~~~v  309 (447)
                      ...+.+. .+++..|+.+|..    +      .+......++.||..+... ......++. .+.+..+...+.+..+.+
T Consensus        39 ~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~-~~Gl~~vl~~~~~i~~l~~sL~s~~~~~  116 (386)
T 2bnx_A           39 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNM  116 (386)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTCCTTSHHH
T ss_pred             HHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCC-HHHHHHHHcCcHHHHHHHHHhCCCCchH
Confidence            3444443 3556666665531    1      1456677888888888554 455666665 457888888888888999


Q ss_pred             HHHHHHHHHHhcCCCCHHH-HH----------HHHHcCChHHHHhhcc-CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhc
Q 013228          310 KNWAARAISNATFGGTHEQ-IK----------YLVREGCIKPLCDLLL-CADPEIVTVFLKGLEKILKVGEAEKNMDIAI  377 (447)
Q Consensus       310 ~~~a~~aL~~l~~~~~~~~-~~----------~l~~~~~l~~L~~ll~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~  377 (447)
                      +..++..|..++....++. ..          ..-+..-...+++.+. +.+.+....++..+..++...+......   
T Consensus       117 r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~---  193 (386)
T 2bnx_A          117 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRV---  193 (386)
T ss_dssp             HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHH---
T ss_pred             HHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHH---
Confidence            9999988877776543211 11          1123345667888776 4566888889999999988776544332   


Q ss_pred             ccccHHHHHHHHhchHHHHHHHhcCCCHHHHHH
Q 013228          378 GDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEK  410 (447)
Q Consensus       378 ~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~  410 (447)
                          .++..|...|..+.+..+....++++...
T Consensus       194 ----~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q  222 (386)
T 2bnx_A          194 ----HIRSELMRLGLHQVLQELREIENEDMKVQ  222 (386)
T ss_dssp             ----HHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred             ----HHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence                26788999999999999998888887544

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=95.89  E-value=0.16  Score=41.91  Aligned_cols=145  Identities=15%  Similarity=0.144  Sum_probs=101.7

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcC-CCCCCChh
Q 013228           84 VPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCA-GKPKPIFD  162 (447)
Q Consensus        84 i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~  162 (447)
                      ++....+..++..++|..|+..|+.+ ...   .+      .++.+...+..+.+..|++.+..++..++. ..+..   
T Consensus        73 ~~la~~L~~~~~deVR~~Av~lLg~~-~~~---~~------~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~---  139 (240)
T 3l9t_A           73 KKLAFLAYQSDVYQVRMYAVFLFGYL-SKD---KE------ILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK---  139 (240)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHT-TTS---HH------HHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT---
T ss_pred             HHHHHHHHhCcchHHHHHHHHHHHhc-cCc---HH------HHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH---
Confidence            34444566677889999999998887 311   11      244444435567888999999999999985 33332   


Q ss_pred             hHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhh
Q 013228          163 QVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQ  242 (447)
Q Consensus       163 ~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~  242 (447)
                          .++.+.....+++..++..|...+.--+......   .....+++.+-.+..+++..|++...+.|..++..+|+.
T Consensus       140 ----~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k---~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~  212 (240)
T 3l9t_A          140 ----ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFK---ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDL  212 (240)
T ss_dssp             ----THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTT---TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             ----HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhh---cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHH
Confidence                5677889999999999999988764322211100   001124677777788899999999999999999999877


Q ss_pred             HHHHHh
Q 013228          243 TQCIIN  248 (447)
Q Consensus       243 ~~~~~~  248 (447)
                      ...+++
T Consensus       213 V~~~~~  218 (240)
T 3l9t_A          213 VKIELK  218 (240)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665554

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=95.83  E-value=0.27  Score=52.11  Aligned_cols=283  Identities=10%  Similarity=0.035  Sum_probs=159.7

Q ss_pred             HHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhhcC-----ChhHHHHHHhcCCH
Q 013228           54 PQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLL--ASPSDDIREQAVCALGNVAAD-----SARCRDLVLSEEAL  126 (447)
Q Consensus        54 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll--~~~~~~i~~~a~~~L~~l~~~-----~~~~~~~~~~~~~l  126 (447)
                      ...|.+|-..|.++-. ++         .+...+...|  .+.++.+|..|+..|.+....     ++..+..+.     
T Consensus        27 ~~~r~~Ae~~L~~~~~-~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir-----   91 (1204)
T 3a6p_A           27 QRYRLEALKFCEEFKE-KC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK-----   91 (1204)
T ss_dssp             HHHHHHHHHHHHHHHH-HC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH-----
T ss_pred             hHHHHHHHHHHHHHHh-Cc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-----
Confidence            6788888888877644 22         1333344333  346889999999999988632     233333332     


Q ss_pred             HHHHHHhccc------cchhHHHHHHHHHHHhcCCC-CCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccC---
Q 013228          127 IPLLTQLNKH------AKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEG---  196 (447)
Q Consensus       127 ~~l~~~l~~~------~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~---  196 (447)
                      ..++..+...      .+..++...+.++..++... |..    ..++++.++.++++ ++.....++.+|..+++.   
T Consensus        92 ~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~----Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~  166 (1204)
T 3a6p_A           92 NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH----WPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVT  166 (1204)
T ss_dssp             HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT----CTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc----chHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcc
Confidence            2344444322      34677788888998888765 322    35678888888866 455567777777777532   


Q ss_pred             ----CcHHHHHH---HHh---CcHHHHHHhcCC-------------------CCchhHhHHHHHHHHhhcCChhhHHHHH
Q 013228          197 ----TNDEIQAV---IEA---GVCPRLVELLGH-------------------PSPSVLTRALQTVVNIAAGDDFQTQCII  247 (447)
Q Consensus       197 ----~~~~~~~~---~~~---~~~~~L~~lL~~-------------------~~~~v~~~a~~~l~~l~~~~~~~~~~~~  247 (447)
                          ...+...+   +..   .+++.+..++.+                   .+..++..++.++.+...-.+.  ..+.
T Consensus       167 ~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~--~~i~  244 (1204)
T 3a6p_A          167 FQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM--SHIT  244 (1204)
T ss_dssp             SCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH--HHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH--HHHH
Confidence                11111111   111   223333333422                   1234666777777766543331  2233


Q ss_pred             hcC--ChHHHHHhhccCCchhHHHHHHHHHHHHhcCC--HHHHHHHHHc---CChHHHHHHHh--------cCchhHHHH
Q 013228          248 NCG--ALPYLLGLLIHNHKKSIKTDACWTISNITAGN--SEHIQAVIDA---GLIGPLVNLLQ--------NAEFDIKNW  312 (447)
Q Consensus       248 ~~~--~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~--~~~~~~l~~~---~~~~~L~~~l~--------~~~~~v~~~  312 (447)
                      +..  .++.+..++.   ++.++..|+.+|..++...  ++....++..   ..+..++....        ..+.++.+.
T Consensus       245 ~~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~  321 (1204)
T 3a6p_A          245 AENCKLLEILCLLLN---EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKR  321 (1204)
T ss_dssp             TTTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHH
T ss_pred             hccchHHHHHHHHcC---CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHH
Confidence            332  5666666654   4578999999999998743  3333333321   11234444432        124566677


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHH-----------cCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 013228          313 AARAISNATFGGTHEQIKYLVR-----------EGCIKPLCDLLLCADPEIVTVFLKGLEKILKV  366 (447)
Q Consensus       313 a~~aL~~l~~~~~~~~~~~l~~-----------~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~  366 (447)
                      .+..+..+..    . ...++.           .++++.+..+..+++..+...++.....+++.
T Consensus       322 l~~ll~~lg~----~-l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~  381 (1204)
T 3a6p_A          322 LCQVLCALGN----Q-LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH  381 (1204)
T ss_dssp             HHHHHHHHHH----H-HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHH----H-HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence            7777766652    1 111111           13467777777777777777777766666654

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=95.71  E-value=1.5  Score=45.82  Aligned_cols=173  Identities=16%  Similarity=0.179  Sum_probs=109.8

Q ss_pred             HHHHHHHhccc---cchhHHHHHHHHHHHh----cCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCc
Q 013228          126 LIPLLTQLNKH---AKLSMLRIATWTLSNF----CAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTN  198 (447)
Q Consensus       126 l~~l~~~l~~~---~~~~~~~~a~~~L~~l----~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~  198 (447)
                      +..+..++...   .++.++..+..+++.+    |...+.........+...+...+...+..-+..++.+|+|+...  
T Consensus       393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p--  470 (1056)
T 1lsh_A          393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP--  470 (1056)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG--
T ss_pred             HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh--
Confidence            34445555321   2445566666665555    43333333334456666677777777888888999999999742  


Q ss_pred             HHHHHHHHhCcHHHHHHhcCC-------CCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhc-cCCchhHHHH
Q 013228          199 DEIQAVIEAGVCPRLVELLGH-------PSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLI-HNHKKSIKTD  270 (447)
Q Consensus       199 ~~~~~~~~~~~~~~L~~lL~~-------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~-~~~~~~v~~~  270 (447)
                               ..++.|.+++..       ....++..|+++|.++....+....        +.+++++. ...+.++|..
T Consensus       471 ---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~EvRia  533 (1056)
T 1lsh_A          471 ---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIR  533 (1056)
T ss_dssp             ---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHH
T ss_pred             ---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChHHHHH
Confidence                     235666677632       2346788899999999876653322        35666663 2338899999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc-CchhHHHHHHHHHHHhcCCCCHH
Q 013228          271 ACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQN-AEFDIKNWAARAISNATFGGTHE  327 (447)
Q Consensus       271 a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~-~~~~v~~~a~~aL~~l~~~~~~~  327 (447)
                      |+..|... ..+..         .+..+...+.. .+..|.......|.+++....|.
T Consensus       534 A~~~Lm~t-~P~~~---------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P~  581 (1056)
T 1lsh_A          534 SCIVFFES-KPSVA---------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPE  581 (1056)
T ss_dssp             HHHHHHHT-CCCHH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGG
T ss_pred             HHHHHHHH-CcCHH---------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCcc
Confidence            98888653 22223         34445566664 57888888888898988876653

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=95.20  E-value=0.39  Score=40.15  Aligned_cols=140  Identities=14%  Similarity=0.132  Sum_probs=88.1

Q ss_pred             HHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcC----C------CCHHHHHHHHHHHHHHcCCChhhHHHHH-hCCCh
Q 013228           16 ATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMR----E------DYPQLQFEAAWALKNIVSGTSEDTKVVI-DHGAV   84 (447)
Q Consensus        16 a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~----~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~i   84 (447)
                      -+..|...+..++..-.+.+ ..+++..|+..|..    +      .+.+.+..++.||..+.. +......+. ..+.+
T Consensus        21 ~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~i   98 (233)
T 2f31_A           21 CLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGI   98 (233)
T ss_dssp             HHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSHH
T ss_pred             HHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHHH
Confidence            34444444444322224555 45677778877642    1      125778899999999998 444444444 45688


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhcCCh-hH-HHHH----------HhcCCHHHHHHHhccccchhHHHHHHHHHHHh
Q 013228           85 PIFVKLLASPSDDIREQAVCALGNVAADSA-RC-RDLV----------LSEEALIPLLTQLNKHAKLSMLRIATWTLSNF  152 (447)
Q Consensus        85 ~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~-~~-~~~~----------~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l  152 (447)
                      ..+...+.++++.++..++..|..+|..+. .. ...+          .+..-..+++..+..+.+.+.+..+...+-.+
T Consensus        99 ~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~l  178 (233)
T 2f31_A           99 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL  178 (233)
T ss_dssp             HHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence            999999999999999999999999986543 11 2221          12234556777665455556666666666556


Q ss_pred             cCCCC
Q 013228          153 CAGKP  157 (447)
Q Consensus       153 ~~~~~  157 (447)
                      ....+
T Consensus       179 i~~~~  183 (233)
T 2f31_A          179 ITPAE  183 (233)
T ss_dssp             HTTCC
T ss_pred             HCCCC
Confidence            55543

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=95.04  E-value=0.56  Score=42.49  Aligned_cols=141  Identities=13%  Similarity=0.120  Sum_probs=92.6

Q ss_pred             HHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcC----------CCCHHHHHHHHHHHHHHcCCChhhHHHHH-hCCCh
Q 013228           16 ATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMR----------EDYPQLQFEAAWALKNIVSGTSEDTKVVI-DHGAV   84 (447)
Q Consensus        16 a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~----------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~i   84 (447)
                      .+..|+..+...+..-.+.+. .+++..|+..|..          ..+...+..++.||..+.. +......+. ....+
T Consensus        87 ~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN-~~~G~~~vl~~~~~i  164 (383)
T 3eg5_B           87 CLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGI  164 (383)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTS-SHHHHHHHHTCSSHH
T ss_pred             HHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhc-chhhHHHHHcChHHH
Confidence            444555444443222245555 5678888888741          1125788999999999998 444444444 45788


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhcCCh-hH-HHHH----------HhcCCHHHHHHHhccccchhHHHHHHHHHHHh
Q 013228           85 PIFVKLLASPSDDIREQAVCALGNVAADSA-RC-RDLV----------LSEEALIPLLTQLNKHAKLSMLRIATWTLSNF  152 (447)
Q Consensus        85 ~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~-~~-~~~~----------~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l  152 (447)
                      ..|...+.++.+.++..++..|..+|..+. .. ...+          .+..-..+++..+....+.+.+..+...+-.+
T Consensus       165 ~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~l  244 (383)
T 3eg5_B          165 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL  244 (383)
T ss_dssp             HHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHH
Confidence            999999999999999999999999996553 11 2221          22344677788875555667777666666666


Q ss_pred             cCCCCC
Q 013228          153 CAGKPK  158 (447)
Q Consensus       153 ~~~~~~  158 (447)
                      ....+.
T Consensus       245 i~~~~d  250 (383)
T 3eg5_B          245 ITPAEE  250 (383)
T ss_dssp             HTTCCC
T ss_pred             HcCCCC
Confidence            665543

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=94.25  E-value=0.26  Score=42.99  Aligned_cols=108  Identities=13%  Similarity=0.083  Sum_probs=71.3

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC--CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh---hHHH
Q 013228           44 FVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH--GAVPIFVKLLASPSDDIREQAVCALGNVAADSA---RCRD  118 (447)
Q Consensus        44 L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~---~~~~  118 (447)
                      +...+.++..+..+..++++++|+.. ++..+..+...  .+++.+...+.+++..++..++..+.|++...-   .. +
T Consensus       152 l~~~~~~~~~p~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~-~  229 (304)
T 3ebb_A          152 LINLLNPKGKPANQLLALRTFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNI-E  229 (304)
T ss_dssp             HHHTTCTTSCHHHHHHHHHHHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCH-H
T ss_pred             HHHhcCCCCChHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCc-h
Confidence            33444444346779999999999998 67777776653  344555555556789999999999999983210   00 1


Q ss_pred             HHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCC
Q 013228          119 LVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAG  155 (447)
Q Consensus       119 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  155 (447)
                      .  ....+..+...+....|.+....++.+|.++...
T Consensus       230 ~--~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~  264 (304)
T 3ebb_A          230 G--KAQCLSLISTILEVVQDLEATFRLLVALGTLISD  264 (304)
T ss_dssp             H--HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred             H--HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhC
Confidence            1  0112444455554556788888888899888865

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=94.01  E-value=2.4  Score=35.73  Aligned_cols=88  Identities=8%  Similarity=0.121  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHh
Q 013228           11 NMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKL   90 (447)
Q Consensus        11 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l   90 (447)
                      +.+...+.....++.+..+.    +. ..+++.++.+..+++ .++|...+..+...+...++...     ..++.|..+
T Consensus        30 ~~kl~~L~qa~el~~~~dp~----ll-~~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~l~~-----~~l~~L~~L   98 (257)
T 3gs3_A           30 STKCELLAKVQETVLGSCAE----LA-EEFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVELLP-----HVINVVSML   98 (257)
T ss_dssp             HHHHHHHHHHHHHHTTTTGG----GH-HHHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHh----HH-HHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence            46666666666655542111    11 235666666655555 77888887777777754433222     245667777


Q ss_pred             hCCCCHHHHHHHHHHHHHh
Q 013228           91 LASPSDDIREQAVCALGNV  109 (447)
Q Consensus        91 l~~~~~~i~~~a~~~L~~l  109 (447)
                      ++++++.+.+.++.+..++
T Consensus        99 l~d~d~~V~K~~I~~~~~i  117 (257)
T 3gs3_A           99 LRDNSAQVIKRVIQACGSI  117 (257)
T ss_dssp             TTCSCHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHH
Confidence            7777777777777766665

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=93.76  E-value=1.8  Score=39.23  Aligned_cols=141  Identities=13%  Similarity=0.116  Sum_probs=90.6

Q ss_pred             HHHHHHHHccCCCCchhhhhccCCHHHHHHhhcC----CC------CHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHH
Q 013228           17 TTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMR----ED------YPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPI   86 (447)
Q Consensus        17 ~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~----~~------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~   86 (447)
                      +..|...+..++..-.+.+. .+++..|+..|..    +.      +.+.+..++.||..+..........+...+++..
T Consensus        26 L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~  104 (386)
T 2bnx_A           26 LESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILL  104 (386)
T ss_dssp             HHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHH
T ss_pred             HHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHH
Confidence            44444444443122244554 4667777777642    11      2577899999999999844444444444578899


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhcCCh-hH-HHHH----------HhcCCHHHHHHHhccccchhHHHHHHHHHHHhcC
Q 013228           87 FVKLLASPSDDIREQAVCALGNVAADSA-RC-RDLV----------LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCA  154 (447)
Q Consensus        87 L~~ll~~~~~~i~~~a~~~L~~l~~~~~-~~-~~~~----------~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~  154 (447)
                      +...+.++++.++..++..|..+|..+. .. ...+          .+..-..+++..+..+.+.+.+..++..+-.+..
T Consensus       105 l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~  184 (386)
T 2bnx_A          105 LVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALIT  184 (386)
T ss_dssp             HHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHC
Confidence            9999998999999999999999996543 11 2221          2233566788888656667777777766666666


Q ss_pred             CCCC
Q 013228          155 GKPK  158 (447)
Q Consensus       155 ~~~~  158 (447)
                      ..+.
T Consensus       185 ~~~d  188 (386)
T 2bnx_A          185 PAEE  188 (386)
T ss_dssp             TCSC
T ss_pred             CCCC
Confidence            6543

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=92.07  E-value=1.1  Score=34.91  Aligned_cols=72  Identities=11%  Similarity=0.104  Sum_probs=55.7

Q ss_pred             ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcC-CCHHHHHHHHHHH
Q 013228          337 CIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSH-DNDEIHEKSVKIL  415 (447)
Q Consensus       337 ~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~-~~~~v~~~a~~~l  415 (447)
                      ++..|..-+.+.++.++..|+..|..+++++...            |...+....+++.+..+... .++.|++++..++
T Consensus        53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~------------Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li  120 (163)
T 1x5b_A           53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKI------------FHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLM  120 (163)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHH------------HHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH------------HHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence            4566777778889999999999999999987653            45555556666777776554 6789999999999


Q ss_pred             HHhcC
Q 013228          416 ETYWC  420 (447)
Q Consensus       416 ~~~~~  420 (447)
                      ..+-.
T Consensus       121 ~~W~~  125 (163)
T 1x5b_A          121 VEWSE  125 (163)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98765

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=91.78  E-value=14  Score=38.54  Aligned_cols=166  Identities=14%  Similarity=0.177  Sum_probs=106.6

Q ss_pred             ChHHHHHhhCC----CCHHHHHHHHHHHHHhhc----CChhHHHHHHhcCCHHHHHHHhc---cccchhHHHHHHHHHHH
Q 013228           83 AVPIFVKLLAS----PSDDIREQAVCALGNVAA----DSARCRDLVLSEEALIPLLTQLN---KHAKLSMLRIATWTLSN  151 (447)
Q Consensus        83 ~i~~L~~ll~~----~~~~i~~~a~~~L~~l~~----~~~~~~~~~~~~~~l~~l~~~l~---~~~~~~~~~~a~~~L~~  151 (447)
                      .+..+..++.+    .++.++..++.+++.+..    ..+.|     ....++.+.+.+.   ...+.+-+..++.+|.|
T Consensus       392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c-----~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN  466 (1056)
T 1lsh_A          392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSC-----PDELLQPLHDLLSQSSDRAKEEEIVLALKALGN  466 (1056)
T ss_dssp             HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSC-----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCC-----CHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhc
Confidence            34555566655    467788888888877752    21111     1122455554442   33456667778999999


Q ss_pred             hcCCCCCCChhhHhhhHHHHHHhhcc-------CChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhc--CCCCc
Q 013228          152 FCAGKPKPIFDQVRPALPALAQLVHS-------NDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELL--GHPSP  222 (447)
Q Consensus       152 l~~~~~~~~~~~~~~~l~~l~~ll~~-------~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL--~~~~~  222 (447)
                      +-..          ..++.+.+++..       ....++..|+++|..+....+...+        +.++++.  ...+.
T Consensus       467 ~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~  528 (1056)
T 1lsh_A          467 AGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKS  528 (1056)
T ss_dssp             HTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCH
T ss_pred             cCCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCCh
Confidence            8752          356677777642       2356888999999999866544332        5566776  44678


Q ss_pred             hhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcC
Q 013228          223 SVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAG  281 (447)
Q Consensus       223 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~  281 (447)
                      ++|..|+..|-..   +|..       ..+..+...+..+.+..|+......|.+++..
T Consensus       529 EvRiaA~~~Lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s  577 (1056)
T 1lsh_A          529 ELRIRSCIVFFES---KPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRS  577 (1056)
T ss_dssp             HHHHHHHHHHHHT---CCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHH---CcCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhc
Confidence            8998888877431   2211       13445777777755889999999999999874

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=91.24  E-value=17  Score=38.53  Aligned_cols=269  Identities=8%  Similarity=0.035  Sum_probs=148.8

Q ss_pred             CHHHHHHhhc-CCCCHHHHHHHHHHHHHHcCC-----ChhhHHHHHhCCChHHHHHhhCC---CCHHHHHHHHHHHHHhh
Q 013228           40 VVPRFVEFLM-REDYPQLQFEAAWALKNIVSG-----TSEDTKVVIDHGAVPIFVKLLAS---PSDDIREQAVCALGNVA  110 (447)
Q Consensus        40 ~v~~L~~ll~-~~~~~~v~~~a~~~L~~l~~~-----~~~~~~~~~~~~~i~~L~~ll~~---~~~~i~~~a~~~L~~l~  110 (447)
                      ....+...|. ...++.+|..|+..|.+....     +++.+.. ++..+++.+......   .+..++...+.++..++
T Consensus        46 ~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~-Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia  124 (1204)
T 3a6p_A           46 ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVY-LKNSVMELIANGTLNILEEENHIKDALSRIVVEMI  124 (1204)
T ss_dssp             THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHH-HHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHH-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHH
Confidence            4555555443 333389999999999987642     2333333 333344544443211   46888988999999887


Q ss_pred             cCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCC---CCCChhh-------H----hhhHHHHHHhhc
Q 013228          111 ADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK---PKPIFDQ-------V----RPALPALAQLVH  176 (447)
Q Consensus       111 ~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~-------~----~~~l~~l~~ll~  176 (447)
                      ...-..    .=.+.++.+++.+..  +......++.+|..++.+.   .......       .    ..+++.+...++
T Consensus       125 ~~d~p~----~Wp~ll~~L~~~~~~--~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~  198 (1204)
T 3a6p_A          125 KREWPQ----HWPDMLIELDTLSKQ--GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQ  198 (1204)
T ss_dssp             HHHSTT----TCTTHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             HHhCcc----cchHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            432100    002356777777733  4455677888888876431   1111110       1    133444444443


Q ss_pred             c-------------------CChhHHHHHHHHHHHhccCCcHHHHHHHHhC--cHHHHHHhcCCCCchhHhHHHHHHHHh
Q 013228          177 S-------------------NDKEVMTDACRALFYLSEGTNDEIQAVIEAG--VCPRLVELLGHPSPSVLTRALQTVVNI  235 (447)
Q Consensus       177 ~-------------------~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~--~~~~L~~lL~~~~~~v~~~a~~~l~~l  235 (447)
                      .                   .+..+...++.++.+....-+.  ..+.+..  +++.+..++.  ++.++..|+.||..+
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~--~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i  274 (1204)
T 3a6p_A          199 ENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM--SHITAENCKLLEILCLLLN--EQELQLGAAECLLIA  274 (1204)
T ss_dssp             HHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH--HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHH
T ss_pred             HHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH--HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHH
Confidence            2                   2345677788888776654332  2233332  6777777665  578899999999999


Q ss_pred             hcCC--hhhHHHHHhc---CChHHHHHhhc-------cCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-----------c
Q 013228          236 AAGD--DFQTQCIINC---GALPYLLGLLI-------HNHKKSIKTDACWTISNITAGNSEHIQAVID-----------A  292 (447)
Q Consensus       236 ~~~~--~~~~~~~~~~---~~l~~l~~~l~-------~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-----------~  292 (447)
                      +...  +.....++..   ..+..++....       +..+.++.+..+..+..+..   . ...++.           .
T Consensus       275 ~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~---~-l~~l~~~~~~~~~~~~l~  350 (1204)
T 3a6p_A          275 VSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGN---Q-LCALLGADSDVETPSNFG  350 (1204)
T ss_dssp             HTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHH---H-HHHHHHTCSSCCCCTTHH
T ss_pred             HhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHH---H-HHHHHhccccccChhHHH
Confidence            8644  2221122221   11223444432       11135566666666666652   1 222222           1


Q ss_pred             CChHHHHHHHhcCchhHHHHHHHHHHHhcCC
Q 013228          293 GLIGPLVNLLQNAEFDIKNWAARAISNATFG  323 (447)
Q Consensus       293 ~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~  323 (447)
                      ++++.++.+...++..+...++.....+...
T Consensus       351 ~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~  381 (1204)
T 3a6p_A          351 KYLESFLAFTTHPSQFLRSSTQMTWGALFRH  381 (1204)
T ss_dssp             HHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence            3577777777777878888877777666554

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=91.08  E-value=3.6  Score=35.27  Aligned_cols=150  Identities=9%  Similarity=0.096  Sum_probs=94.2

Q ss_pred             hhHHHHHHhhccC------ChhHHHHHHHHHHHhccCCcHHHHHHH-HhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcC
Q 013228          166 PALPALAQLVHSN------DKEVMTDACRALFYLSEGTNDEIQAVI-EAGVCPRLVELLGHPSPSVLTRALQTVVNIAAG  238 (447)
Q Consensus       166 ~~l~~l~~ll~~~------~~~v~~~al~~l~~l~~~~~~~~~~~~-~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~  238 (447)
                      .-+..+..+++++      +......++..|..++..-..-.+.+- +...+..|+ +.....+.+++.|.++|+...+.
T Consensus        22 ~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRN  100 (315)
T 3qml_C           22 SDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRN  100 (315)
T ss_dssp             HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHcc
Confidence            3344455566554      455677788888887743322222222 334444444 33446677999999999999999


Q ss_pred             ChhhHHHHHhc--CChHHHHHhhcc----C--CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--chh
Q 013228          239 DDFQTQCIINC--GALPYLLGLLIH----N--HKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNA--EFD  308 (447)
Q Consensus       239 ~~~~~~~~~~~--~~l~~l~~~l~~----~--~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~--~~~  308 (447)
                      +|.....+.+.  .++..+..-|..    +  ....+.+.-+.+|.-|...+..    + ....+..|.+++...  ++.
T Consensus       101 NP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~----F-~~~~m~~L~~ly~~~~~d~~  175 (315)
T 3qml_C          101 NPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED----L-PIYSTVVLQNVYERNNKDKQ  175 (315)
T ss_dssp             CHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT----C---CCHHHHHHHHHHTTTCHH
T ss_pred             CHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh----h-hhccHHHHHHHHccCCCCHH
Confidence            99887776653  334444433322    0  1345667777778777665421    2 244678888888877  899


Q ss_pred             HHHHHHHHHHHhc
Q 013228          309 IKNWAARAISNAT  321 (447)
Q Consensus       309 v~~~a~~aL~~l~  321 (447)
                      ++..++..+..+.
T Consensus       176 ~k~Kvl~li~d~f  188 (315)
T 3qml_C          176 LQIKVLELISKIL  188 (315)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc
Confidence            9999998888776

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=90.87  E-value=8.7  Score=34.49  Aligned_cols=88  Identities=8%  Similarity=0.120  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHh
Q 013228           11 NMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKL   90 (447)
Q Consensus        11 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l   90 (447)
                      +.+...+..+.+++-+. ++.    .-.++++.++.+-..++ .++|...+..|...+....+...     .+++.|..+
T Consensus        40 ~~Kl~~L~q~~EL~l~~-dps----Ll~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~L  108 (386)
T 3o2t_A           40 DSKITVLKQVQELIINK-DPT----LLDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIELLL-----KLIANLNML  108 (386)
T ss_dssp             THHHHHHHHHHHHHHTT-CGG----GGGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcc-CHH----HHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence            35677777777765542 111    22457888888887777 89999999988888764444432     345677788


Q ss_pred             hCCCCHHHHHHHHHHHHHh
Q 013228           91 LASPSDDIREQAVCALGNV  109 (447)
Q Consensus        91 l~~~~~~i~~~a~~~L~~l  109 (447)
                      +.+.++.+.+.++.+..++
T Consensus       109 L~d~d~~V~K~~I~~~tsl  127 (386)
T 3o2t_A          109 LRDENVNVVKKAILTMTQL  127 (386)
T ss_dssp             HTCSSHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHH
Confidence            8888888888888887776

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=90.67  E-value=2.8  Score=35.92  Aligned_cols=134  Identities=14%  Similarity=0.109  Sum_probs=86.9

Q ss_pred             hHhHHHHHHHHhhcCChhhHHHHH-hcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--cCChHHHHH
Q 013228          224 VLTRALQTVVNIAAGDDFQTQCII-NCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVID--AGLIGPLVN  300 (447)
Q Consensus       224 v~~~a~~~l~~l~~~~~~~~~~~~-~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~--~~~~~~L~~  300 (447)
                      ....|+..|.-++.......+.+- +...+..|+ +.... ...++..++.+++...+.+|..+..+.+  ..++..++.
T Consensus        44 ~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~-~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~  121 (315)
T 3qml_C           44 RLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENL-PLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMA  121 (315)
T ss_dssp             HHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccC-ChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHH
Confidence            456677777777765554444333 323333344 22334 6789999999999999999998888776  345555555


Q ss_pred             HHhc-------CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCC--CHHHHHHHHHHHHHHHH
Q 013228          301 LLQN-------AEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCA--DPEIVTVFLKGLEKILK  365 (447)
Q Consensus       301 ~l~~-------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~~~~~a~~~l~~l~~  365 (447)
                      -|..       ....+++.-+.+|.-|+...  .   .+. ...+..|.+++...  ++.++..++..+..++.
T Consensus       122 ~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~--~---~F~-~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~  189 (315)
T 3qml_C          122 ALSNLNDSNHRSSNILIKRYLSILNELPVTS--E---DLP-IYSTVVLQNVYERNNKDKQLQIKVLELISKILK  189 (315)
T ss_dssp             HHHHHHCC--CCCHHHHHHHHHHHHHSCCCS--T---TC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcccchhHHHHHHHHHHHHHHhcCh--H---hhh-hccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence            4442       23356666777777777753  1   111 34567777777666  88999999999999985

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=90.15  E-value=0.75  Score=34.76  Aligned_cols=72  Identities=13%  Similarity=0.158  Sum_probs=54.7

Q ss_pred             ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHH
Q 013228          337 CIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILE  416 (447)
Q Consensus       337 ~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~  416 (447)
                      ++..|..-+.+.++.++..|+..|..++++++..            |...+....+++.+..+....++.|++++..++.
T Consensus        43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~------------f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~  110 (140)
T 3ldz_A           43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKI------------FHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMV  110 (140)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH------------HHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHH------------HHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence            4666777778888999999999999999887653            4444545556666666666678999999999998


Q ss_pred             HhcC
Q 013228          417 TYWC  420 (447)
Q Consensus       417 ~~~~  420 (447)
                      .+..
T Consensus       111 ~W~~  114 (140)
T 3ldz_A          111 EWTD  114 (140)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8653

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=89.94  E-value=1.2  Score=34.87  Aligned_cols=72  Identities=14%  Similarity=0.142  Sum_probs=56.8

Q ss_pred             ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhc------CCCHHHHHH
Q 013228          337 CIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRS------HDNDEIHEK  410 (447)
Q Consensus       337 ~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~------~~~~~v~~~  410 (447)
                      ++..|..-+.+.++.++..|+..|..+++++...            |...+....+++.|..+..      ..++.|+++
T Consensus        51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~------------Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~k  118 (171)
T 1juq_A           51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRR------------FHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTK  118 (171)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH------------HHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH------------HHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHH
Confidence            4666777788899999999999999999987654            5666666777788888764      246899999


Q ss_pred             HHHHHHHhcC
Q 013228          411 SVKILETYWC  420 (447)
Q Consensus       411 a~~~l~~~~~  420 (447)
                      +..++..+..
T Consensus       119 il~li~~W~~  128 (171)
T 1juq_A          119 VIELLYSWTM  128 (171)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988654

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=89.91  E-value=1.2  Score=34.07  Aligned_cols=72  Identities=13%  Similarity=0.096  Sum_probs=57.6

Q ss_pred             ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcC------CCHHHHHH
Q 013228          337 CIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSH------DNDEIHEK  410 (447)
Q Consensus       337 ~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~------~~~~v~~~  410 (447)
                      ++..|..-+.+.++.++..|+..|..+++++...            |...+....+++.|..+...      .+++|+++
T Consensus        39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~------------fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~k  106 (148)
T 1mhq_A           39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEK------------FHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGR  106 (148)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH------------HHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH------------HHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHH
Confidence            4666777778899999999999999999987653            56667667778888887653      47899999


Q ss_pred             HHHHHHHhcC
Q 013228          411 SVKILETYWC  420 (447)
Q Consensus       411 a~~~l~~~~~  420 (447)
                      +..++..+..
T Consensus       107 il~li~~W~~  116 (148)
T 1mhq_A          107 VIEILFSWTV  116 (148)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998754

>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A

Probab=89.85  E-value=2.1  Score=32.09  Aligned_cols=78  Identities=8%  Similarity=0.143  Sum_probs=57.1

Q ss_pred             ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHH-hchHHHHHHHhcCCC--------HHH
Q 013228          337 CIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEE-AEGLEKIENLRSHDN--------DEI  407 (447)
Q Consensus       337 ~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~l~~l~~~~~--------~~v  407 (447)
                      +++.|..=|.+.++.++..++.+|..|+..+...            |...+.+ ...++.+.++...++        ..|
T Consensus        50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~------------f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~V  117 (140)
T 1vdy_A           50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSE------------FRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAV  117 (140)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHH------------HHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHH
T ss_pred             HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHH------------HHHHHHHhHHHHHHHHhcCCCCCcccccchhHHH
Confidence            5778888888888999999999999999876543            4555553 344555555544433        679


Q ss_pred             HHHHHHHHHHhcCCCCCCC
Q 013228          408 HEKSVKILETYWCGRVAGP  426 (447)
Q Consensus       408 ~~~a~~~l~~~~~~~~~~~  426 (447)
                      +.+|.++++-+|+++...+
T Consensus       118 R~~AkEl~~ll~d~~~~~~  136 (140)
T 1vdy_A          118 RETAHETISAIFSEENGSG  136 (140)
T ss_dssp             HHHHHHHHHHHTCCSSCCC
T ss_pred             HHHHHHHHHHHhCcCCCCC
Confidence            9999999999998776543

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=89.36  E-value=1.3  Score=33.79  Aligned_cols=72  Identities=14%  Similarity=0.151  Sum_probs=57.3

Q ss_pred             ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhc------CCCHHHHHH
Q 013228          337 CIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRS------HDNDEIHEK  410 (447)
Q Consensus       337 ~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~------~~~~~v~~~  410 (447)
                      ++..|..-+.+.++.++..|+..|..+++++...            |...+....+++.|..+..      ..+++|+.+
T Consensus        49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~------------fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~k  116 (149)
T 3g2s_A           49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKR------------FHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNK  116 (149)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHH------------HHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHH------------HHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHH
Confidence            4666777778899999999999999999987764            5666666777788887764      357899999


Q ss_pred             HHHHHHHhcC
Q 013228          411 SVKILETYWC  420 (447)
Q Consensus       411 a~~~l~~~~~  420 (447)
                      ...++..+..
T Consensus       117 il~li~~W~~  126 (149)
T 3g2s_A          117 ILELLYSWTV  126 (149)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988754

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=86.21  E-value=1.9  Score=32.47  Aligned_cols=72  Identities=4%  Similarity=-0.000  Sum_probs=56.4

Q ss_pred             ChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 013228          294 LIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILK  365 (447)
Q Consensus       294 ~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~  365 (447)
                      .+..+..-+.++++.++..|+..|-.+..++.+.....+....+++.|..++...++.++..++..+..-..
T Consensus        43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~  114 (140)
T 3ldz_A           43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD  114 (140)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence            455567777888999999999999888888777766666666677778888877788899888888776654

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=85.78  E-value=2.4  Score=32.27  Aligned_cols=73  Identities=8%  Similarity=-0.094  Sum_probs=58.7

Q ss_pred             ChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccC------CCHHHHHHHHHHHHHHHHh
Q 013228          294 LIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC------ADPEIVTVFLKGLEKILKV  366 (447)
Q Consensus       294 ~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~~~~~a~~~l~~l~~~  366 (447)
                      .+..|..-+.+.++.++..|+..|-.+..++.+.....+....+++.|+.++..      .++.++..++..+..-...
T Consensus        49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~  127 (149)
T 3g2s_A           49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG  127 (149)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence            455677778889999999999999999998888777777777788888888863      4678888888888776653

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=84.22  E-value=4.7  Score=30.65  Aligned_cols=72  Identities=10%  Similarity=-0.063  Sum_probs=57.6

Q ss_pred             ChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccC------CCHHHHHHHHHHHHHHHH
Q 013228          294 LIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC------ADPEIVTVFLKGLEKILK  365 (447)
Q Consensus       294 ~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~~~~~a~~~l~~l~~  365 (447)
                      .+..|..-++++++.++..|+..|-.+..++.+.....+....+++.|+.++..      .++.++..++..+..-..
T Consensus        39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (148)
T 1mhq_A           39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV  116 (148)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            455677778889999999999999999998888777777777889889988864      366888888777766543

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=83.52  E-value=12  Score=33.52  Aligned_cols=132  Identities=14%  Similarity=0.086  Sum_probs=85.9

Q ss_pred             hHhHHHHHHHHhhc-CChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH
Q 013228          224 VLTRALQTVVNIAA-GDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLL  302 (447)
Q Consensus       224 v~~~a~~~l~~l~~-~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l  302 (447)
                      .+...+.-+..++. .++.    ++ .++++.++.+-.+. +.++|+..+..|...+....+...     ..++.|..++
T Consensus        41 ~Kl~~L~q~~EL~l~~dps----Ll-~~fl~~il~f~~d~-~~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~LL  109 (386)
T 3o2t_A           41 SKITVLKQVQELIINKDPT----LL-DNFLDEIIAFQADK-SIEVRKFVIGFIEEACKRDIELLL-----KLIANLNMLL  109 (386)
T ss_dssp             HHHHHHHHHHHHHHTTCGG----GG-GGGHHHHHGGGGCS-CHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHH----HH-HHHHHHHHHhccCC-cHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence            44555555555433 2232    22 36788888888888 899999999999888764433221     2566788888


Q ss_pred             hcCchhHHHHHHHHHHHhcC--------CCC-HHHHHHHHH--cCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 013228          303 QNAEFDIKNWAARAISNATF--------GGT-HEQIKYLVR--EGCIKPLCDLLLCADPEIVTVFLKGLEKILKV  366 (447)
Q Consensus       303 ~~~~~~v~~~a~~aL~~l~~--------~~~-~~~~~~l~~--~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~  366 (447)
                      .++++.+.+.++.+..++-.        ..+ .+.....++  ..+-..++.++++.+..++..+++.+..++-.
T Consensus       110 ~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~  184 (386)
T 3o2t_A          110 RDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVT  184 (386)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHH
Confidence            88889999888887777642        111 111111111  12345677778888999999999999998853

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=81.14  E-value=2.5  Score=32.80  Aligned_cols=71  Identities=4%  Similarity=-0.036  Sum_probs=54.1

Q ss_pred             ChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccC-CCHHHHHHHHHHHHHHH
Q 013228          294 LIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC-ADPEIVTVFLKGLEKIL  364 (447)
Q Consensus       294 ~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~~~~~a~~~l~~l~  364 (447)
                      .+..|..-+.++++.++..|+..|-.+..++.+.....+....+++.|+.++.. .++.++..++..+..-.
T Consensus        53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~  124 (163)
T 1x5b_A           53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS  124 (163)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence            455577778888999999999999999988877777666666778888887765 56678877777665543

>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20

Probab=81.07  E-value=24  Score=32.34  Aligned_cols=222  Identities=13%  Similarity=0.058  Sum_probs=114.6

Q ss_pred             cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC-----hhhHH
Q 013228            2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGT-----SEDTK   76 (447)
Q Consensus         2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~-----~~~~~   76 (447)
                      +.++.|+|+.-|...-..|+.+-.+- .. .+..+...+-..+.+.+-......-....+++++.+..+.     ++.+.
T Consensus       168 l~lfdSeDpRERd~LktiLhrIY~Kf-~~-~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~  245 (449)
T 2npp_B          168 LELFDSEDPRERDFLKTTLHRIYGKF-LG-LRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKI  245 (449)
T ss_dssp             HHTTTSSTHHHHHHHHHHHHHHHHSC-TT-THHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHH
T ss_pred             HHHcCCCChHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHH
Confidence            55678888888888888887776552 22 2333333344455555533221233456777788877653     23332


Q ss_pred             HHHhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCC
Q 013228           77 VVIDHGAVPIFVKLLASPS-DDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAG  155 (447)
Q Consensus        77 ~~~~~~~i~~L~~ll~~~~-~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  155 (447)
                      .+     ...|+.+...+. .....+-..++..+...++.....+     +..++..- ..++..-...-+.-+..+...
T Consensus       246 fl-----~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~W-P~tns~KevlFL~eleeile~  314 (449)
T 2npp_B          246 FL-----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYW-PKTHSPKEVMFLNELEEILDV  314 (449)
T ss_dssp             HH-----HHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTC-CSSCHHHHHHHHHHHHHHHTT
T ss_pred             HH-----HHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHH-----HHHHHHhC-CCCCchHHHHHHHHHHHHHHh
Confidence            22     244555554432 2233344455555554444332221     23333333 222222222233344444433


Q ss_pred             CCCCC-hhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHh---CcHHHHHHhcCC-----CCchhHh
Q 013228          156 KPKPI-FDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEA---GVCPRLVELLGH-----PSPSVLT  226 (447)
Q Consensus       156 ~~~~~-~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~---~~~~~L~~lL~~-----~~~~v~~  226 (447)
                      -+... ......++..+.+.+.+++-.|.+.|+....|     +. ...++..   .++|.+...|..     =+..++.
T Consensus       315 ~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N-----~~-i~~li~~n~~~IlPii~p~L~~~s~~HWn~~V~~  388 (449)
T 2npp_B          315 IEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNN-----EY-IMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHG  388 (449)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGC-----HH-HHHHHHTTHHHHHHHHHHHHTSCTTCCSSTTHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCC-----HH-HHHHHHhchhhhHHhhHHHHHHHHHHhcCHHHHH
Confidence            21111 12335667777788889999998888754422     11 1122221   345666665522     2467888


Q ss_pred             HHHHHHHHhhcCChhh
Q 013228          227 RALQTVVNIAAGDDFQ  242 (447)
Q Consensus       227 ~a~~~l~~l~~~~~~~  242 (447)
                      .+..++..+...++..
T Consensus       389 la~~vlk~l~e~d~~l  404 (449)
T 2npp_B          389 LIYNALKLFMEMNQKL  404 (449)
T ss_dssp             HHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHCHHH
Confidence            8888888777766644

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=81.01  E-value=4.7  Score=33.29  Aligned_cols=72  Identities=11%  Similarity=0.207  Sum_probs=52.9

Q ss_pred             ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHh-cCCCHHHHHHHHHHH
Q 013228          337 CIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLR-SHDNDEIHEKSVKIL  415 (447)
Q Consensus       337 ~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~-~~~~~~v~~~a~~~l  415 (447)
                      ++..|..-+.+.++.++..|+..|..+++++...            |...+....+++.|..+. ...+++|++++..++
T Consensus        46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~------------f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li  113 (226)
T 3zyq_A           46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQT------------VHDEVANKQTMEELKDLLKRQVEVNVRNKILYLI  113 (226)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHH------------HHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchH------------HHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence            4666777778899999999999999999987663            344454555555665553 346788999999998


Q ss_pred             HHhcC
Q 013228          416 ETYWC  420 (447)
Q Consensus       416 ~~~~~  420 (447)
                      ..+..
T Consensus       114 ~~W~~  118 (226)
T 3zyq_A          114 QAWAH  118 (226)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87643

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=80.43  E-value=5  Score=31.39  Aligned_cols=72  Identities=8%  Similarity=-0.068  Sum_probs=55.9

Q ss_pred             ChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccC------CCHHHHHHHHHHHHHHHH
Q 013228          294 LIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC------ADPEIVTVFLKGLEKILK  365 (447)
Q Consensus       294 ~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~~~~~a~~~l~~l~~  365 (447)
                      .+..|..-+.+.++.++..|+..|-.+..++.......+.+..+++.|+.++..      .+..++..++..+..-..
T Consensus        51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  128 (171)
T 1juq_A           51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM  128 (171)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            355677778889999999999999999988766666677777788888888863      356888888777766543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	447
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	6e-92
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-77
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-18
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	9e-34
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-06
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	5e-18
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	9e-15
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-14
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-12
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-11
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	3e-11
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	5e-10
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	7e-11
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	5e-08
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	4e-04
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	5e-09
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	2e-07
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	4e-05
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	7e-05
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	0.001
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	0.001

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  285 bits (729), Expect = 6e-92
 Identities = 221/422 (52%), Positives = 281/422 (66%), Gaps = 7/422 (1%)

Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
           M   + SDD   QL AT   R++LS     P + VI  GVVPR VEF+       LQ EA
Sbjct: 81  MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEA 140

Query: 61  AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
           AWAL NI SGTS  TKVV+D  AVP+F++LL + S +++EQA+ ALGNVA DS   RD V
Sbjct: 141 AWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYV 200

Query: 121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK-PKPIFDQVRPALPALAQLVHSND 179
           L   A+ P+L  L    K S++R ATWTLSN C GK P+P +  V  ALP LA+L++S D
Sbjct: 201 LQCNAMEPIL-GLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMD 259

Query: 180 KEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGD 239
            E + DAC A+ YLS+G  + IQAVI+  +  RLVELL H S  V T AL+ V NI  G+
Sbjct: 260 TETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGN 319

Query: 240 DFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLV 299
           D QTQ +IN G LP L  LL  + K++IK +ACWTISNITAGN+E IQAVIDA LI PLV
Sbjct: 320 DLQTQVVINAGVLPALRLLL-SSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLV 378

Query: 300 NLLQNAEFDIKNWAARAISNATFGGTH--EQIKYLVREGCIKPLCDLLLCADPEIVTVFL 357
            LL+ AE+  K  A  AISNA+ GG    + I+YLV +GCIKPLCDLL  AD  I+ V L
Sbjct: 379 KLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTL 438

Query: 358 KGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILET 417
             LE ILK+GEA+K       ++N+ A  +E+A G+EKI N + ++ND+I+EK+ KI+ET
Sbjct: 439 DALENILKMGEADKEARGL--NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIET 496

Query: 418 YW 419
           Y+
Sbjct: 497 YF 498

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  245 bits (625), Expect = 2e-77
 Identities = 186/424 (43%), Positives = 261/424 (61%), Gaps = 13/424 (3%)

Query: 1   MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
           +V G+ S++   QL+AT   RKLLS  +  P + +I  G++P+FV FL + D   +QFE+
Sbjct: 18  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 77

Query: 61  AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV 120
           AWAL NI SGTSE TK V+D GA+P F+ LLASP   I EQAV ALGN+A D +  RDLV
Sbjct: 78  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 137

Query: 121 LSEEALIPLLTQLNKH----AKLSMLRIATWTLSNFCAGKPK-PIFDQVRPALPALAQLV 175
           +   A+ PLL  L            LR  TWTLSN C  K   P  D V   LP L +L+
Sbjct: 138 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 197

Query: 176 HSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI 235
           H ND EV+ D+C A+ YL++G N+ I+ V++ GV P+LV+LLG     ++T AL+ + NI
Sbjct: 198 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 257

Query: 236 AAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLI 295
             G D QTQ +I+ GAL     LL  N K +I+ +A WT+SNITAG  + IQ V++ GL+
Sbjct: 258 VTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 316

Query: 296 GPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTV 355
             LV +L  A+F  +  AA AI+N T GGT EQI YLV  G I+PL +LL   D +I+ V
Sbjct: 317 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 376

Query: 356 FLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKIL 415
            L  +  I +  E        +G+  + + ++EE  GL+KIE L+ H+N+ +++ S+ ++
Sbjct: 377 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 429

Query: 416 ETYW 419
           E Y+
Sbjct: 430 EKYF 433

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.2 bits (209), Expect = 2e-18
 Identities = 42/187 (22%), Positives = 71/187 (37%), Gaps = 3/187 (1%)

Query: 163 QVRPALPALAQLVHSNDKEVMTDACRALF-YLSEGTNDEIQAVIEAGVCPRLVELLGH-P 220
            V  ++  + + ++SN+ E    A +A    LS      I  +I AG+ P+ V  LG   
Sbjct: 10  TVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD 69

Query: 221 SPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA 280
              +   +   + NIA+G   QT+ +++ GA+P     L+ +    I   A W + NI  
Sbjct: 70  CSPIQFESAWALTNIASGTSEQTKAVVDGGAIP-AFISLLASPHAHISEQAVWALGNIAG 128

Query: 281 GNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKP 340
             S     VI  G I PL+ LL   +              T                ++ 
Sbjct: 129 DGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQ 188

Query: 341 LCDLLLC 347
           +   L+ 
Sbjct: 189 ILPTLVR 195

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (325), Expect = 9e-34
 Identities = 58/447 (12%), Positives = 123/447 (27%), Gaps = 70/447 (15%)

Query: 41  VPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIRE 100
           +P+ V++L  +D  + Q   A+ +++         + V   G +   V LL SP+ ++++
Sbjct: 4   IPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 101 QAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPI 160
            A  AL N+   S   +     +  +   ++ L +     + +  T  L N  +      
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 161 FDQVRPALPALAQLV---------------HSNDKEVMTDACRALFYLSEGTNDEIQAVI 205
                       +++                  D EV  +A   L  LS           
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182

Query: 206 EAGVCPRLVELLGHPSPSVL--------------TRALQTVVNIAAGDDFQTQCIINCGA 251
            +G+   L+  + +   +                  + +    +            N   
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242

Query: 252 LPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKN 311
                G    N    +  +           N +    +  +  I   +NL+  ++ D   
Sbjct: 243 EKSSTGCF-SNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATL 301

Query: 312 WAARAISNATFGGTHEQIKY-----LVREGCIKPLCDLL-----------------LCAD 349
            A                        ++E  +  +  LL                 +   
Sbjct: 302 EACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361

Query: 350 PEIVTVFLKG----LEKILKVGEAEKNMDIAI------------GDVNQYAQLVEEAEGL 393
           P +  V        + ++L       +    I                Q A+    +  L
Sbjct: 362 PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSML 421

Query: 394 EKIENL-RSHDNDEIHEKSVKILETYW 419
             I NL RS  + +  E +  +L   W
Sbjct: 422 NNIINLCRSSASPKAAEAARLLLSDMW 448

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 2e-06
 Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 6/93 (6%)

Query: 27  ARSAPTEEVIPFGVVPRFVEFLMREDY-----PQLQFEAAWALKNIVSGTSEDTKVVIDH 81
           +R      V+   V P     L            +   A + ++N+++   +  K     
Sbjct: 359 SRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSS 418

Query: 82  GAVPIFVKLLASP-SDDIREQAVCALGNVAADS 113
             +   + L  S  S    E A   L ++ +  
Sbjct: 419 SMLNNIINLCRSSASPKAAEAARLLLSDMWSSK 451

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.2 bits (206), Expect = 5e-18
 Identities = 40/238 (16%), Positives = 84/238 (35%), Gaps = 1/238 (0%)

Query: 82  GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSM 141
            A+P   KLL      +  +A   +  ++   A    ++ S + +  ++  +     +  
Sbjct: 17  RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVET 76

Query: 142 LRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEI 201
            R    TL N    +   +       +PAL +++ S    V+  A   L  L        
Sbjct: 77  ARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136

Query: 202 QAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIH 261
            AV  AG   ++V LL   +   L      +  +A G+      I+  G    L+ ++  
Sbjct: 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 196

Query: 262 NHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISN 319
              + +       +  + +  S +  A+++AG +  L   L +    +       + N
Sbjct: 197 YTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 253

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.2 bits (180), Expect = 9e-15
 Identities = 64/345 (18%), Positives = 113/345 (32%), Gaps = 10/345 (2%)

Query: 7   SDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKN 66
            +D  +  +A   + +L     S       P  +V   V  +   +  +     A  L N
Sbjct: 28  DEDQVVVNKAAVMVHQLSKKEASRHAIMRSP-QMVSAIVRTMQNTNDVETARCTAGTLHN 86

Query: 67  IVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEAL 126
           + S   E    +   G +P  VK+L SP D +   A+  L N+       +  V     L
Sbjct: 87  L-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGL 145

Query: 127 IPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDA 186
             ++  LNK     +              +   +         AL  ++ +   E +   
Sbjct: 146 QKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWT 205

Query: 187 CRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCI 246
              +  +    +    A++EAG    L   L  PS  ++   L T+ N++   D  T+  
Sbjct: 206 TSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS---DAATKQE 262

Query: 247 INCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAE 306
              G L  L+ LL  +    + T A   +SN+T  N ++   V   G I  LV  +  A 
Sbjct: 263 GMEGLLGTLVQLLGSDDIN-VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG 321

Query: 307 FDIKNW----AARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC 347
                      A     +           +     +  +  LL  
Sbjct: 322 DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHP 366

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.6 bits (176), Expect = 2e-14
 Identities = 29/224 (12%), Positives = 75/224 (33%), Gaps = 2/224 (0%)

Query: 197 TNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLL 256
            N +  A +     P L +LL      V+ +A   V  ++  +  +   + +   +  ++
Sbjct: 6   INYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIV 65

Query: 257 GLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARA 316
             + + +          T+ N++  + E + A+  +G I  LV +L +    +  +A   
Sbjct: 66  RTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITT 124

Query: 317 ISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIA 376
           + N            +   G ++ +  LL   + + + +    L+ +    +  K + +A
Sbjct: 125 LHNLLL-HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA 183

Query: 377 IGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWC 420
            G       ++      + +              S K       
Sbjct: 184 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAG 227

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.6 bits (163), Expect = 1e-12
 Identities = 58/338 (17%), Positives = 109/338 (32%), Gaps = 24/338 (7%)

Query: 48  LMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALG 107
           +MR    +        +  ++S  S +   +++ G +      L  PS  + +  +  L 
Sbjct: 193 IMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 252

Query: 108 NVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPA 167
           N++  + +   +      L+ LL   + +       I +    N    K          A
Sbjct: 253 NLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEA 312

Query: 168 LPALAQLVHSNDK--EVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVL 225
           L          +   E    A R L    +       AV      P +V+LL  PS   L
Sbjct: 313 LVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 372

Query: 226 TRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISN-------- 277
            +A   ++   A        +   GA+P L+ LL+  H+ + +  +              
Sbjct: 373 IKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRM 432

Query: 278 ------------ITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGT 325
                       I A +  +   +     I   V LL +   +I+  AA  +        
Sbjct: 433 EEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ--D 490

Query: 326 HEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKI 363
            E  + +  EG   PL +LL   +  + T     L ++
Sbjct: 491 KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.4 bits (152), Expect = 2e-11
 Identities = 31/198 (15%), Positives = 63/198 (31%), Gaps = 23/198 (11%)

Query: 39  GVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDI 98
             +P  V+ L    +  L       ++N+ +    +   + + GA+P  V+LL     D 
Sbjct: 355 YGLPVVVKLLHPPSHWPLIKATVGLIRNL-ALCPANHAPLREQGAIPRLVQLLVRAHQDT 413

Query: 99  REQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPK 158
           + +                               +       ++   T  L         
Sbjct: 414 QRRTSMGGTQ---------------------QQFVEGVRMEEIVEGCTGALHILARDVHN 452

Query: 159 PIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLG 218
            I  +    +P   QL++S  + +   A   L  L++   +  +A+   G    L ELL 
Sbjct: 453 RIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLH 511

Query: 219 HPSPSVLTRALQTVVNIA 236
             +  V T A   +  ++
Sbjct: 512 SRNEGVATYAAAVLFRMS 529

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (150), Expect = 7e-11
 Identities = 49/378 (12%), Positives = 117/378 (30%), Gaps = 42/378 (11%)

Query: 54  PQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADS 113
              +F A   L   +   S       +   V + +KLL   + +++  AV  LG +    
Sbjct: 17  KDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLV--- 73

Query: 114 ARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQ--VRPALPAL 171
           ++ ++  +    ++  L       K  +  I++  L       P               +
Sbjct: 74  SKVKEYQVET--IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKI 131

Query: 172 AQLVHS-----NDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLT 226
              + S      D  V  +A   +  +       +     + +   L+  L  P  +V  
Sbjct: 132 TGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPS-ILTCLLPQLTSPRLAVRK 190

Query: 227 RALQTVVNIA--AGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSE 284
           R +  + ++    G+            + +LL  L  N   S        I+ I+     
Sbjct: 191 RTIIALGHLVMSCGNIVFVD------LIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH 244

Query: 285 HIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDL 344
            I   ++  +I  +V      + +++ +  +A  +       E   ++            
Sbjct: 245 RIGEYLEK-IIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV------------ 291

Query: 345 LLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDN 404
                  I+ + LK L         +++ D    D +      ++ +G +   +     +
Sbjct: 292 -----STIINICLKYLTYDPNYNYDDEDEDENAMDADGG---DDDDQGSDDEYSDDDDMS 343

Query: 405 DEIHEKSVKILETYWCGR 422
            ++   + K L+     R
Sbjct: 344 WKVRRAAAKCLDAVVSTR 361

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 5e-08
 Identities = 35/268 (13%), Positives = 83/268 (30%), Gaps = 44/268 (16%)

Query: 1    MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEA 60
            +   V+S    +  + + +       A +    +  P  V     +         ++  A
Sbjct: 776  LTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLA 835

Query: 61   AWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAA--------- 111
              +L  +        ++ +      + ++  +SPS++++  A  ALG+++          
Sbjct: 836  LLSLGEVGHHIDLSGQLEL----KSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPF 891

Query: 112  ------DSARCRDLVLSE-----------------EALIPLLTQLNKHAKLSMLRIATWT 148
                     + + L+L                   E +  LL +  + A+     +    
Sbjct: 892  VLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAEC 951

Query: 149  LSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAG 208
            L       P+ +       LP L   + S      +    A+ +        I  +++  
Sbjct: 952  LGKLTLIDPETL-------LPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLK-N 1003

Query: 209  VCPRLVELLGHPSPSVLTRALQTVVNIA 236
                 ++ L  P  +V   AL T  + A
Sbjct: 1004 CIGDFLKTLEDPDLNVRRVALVTFNSAA 1031

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 4e-04
 Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 5/124 (4%)

Query: 62   WALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVL 121
               +N+V+       ++     +P     L S S   R   V A+    +D  +  D +L
Sbjct: 942  EGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLL 1001

Query: 122  SEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKP---KPIFDQVRPALPALAQLVHSN 178
                 I    +  +   L++ R+A  T ++    KP   + + D V P L    ++    
Sbjct: 1002 KN--CIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKEL 1059

Query: 179  DKEV 182
             +EV
Sbjct: 1060 IREV 1063

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 4e-05
 Identities = 21/197 (10%), Positives = 60/197 (30%), Gaps = 12/197 (6%)

Query: 42  PRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQ 101
              +  L  +   +++      +  +      +     D     + +  L      IRE 
Sbjct: 404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF---FDEKLNSLCMAWLVDHVYAIREA 460

Query: 102 AVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIF 161
           A   L  +     +      +   +IP +  ++            + ++       + I 
Sbjct: 461 ATSNLKKLVEKFGKE----WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDIT 516

Query: 162 DQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPS 221
            +    LP + ++       V  +  ++L  +    +    + +++ V P L +L     
Sbjct: 517 TKH--MLPTVLRMAGDPVANVRFNVAKSLQKIGPILD---NSTLQSEVKPILEKLTQDQD 571

Query: 222 PSVLTRALQTVVNIAAG 238
             V   A + +  ++  
Sbjct: 572 VDVKYFAQEALTVLSLA 588

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 7e-05
 Identities = 24/128 (18%), Positives = 52/128 (40%), Gaps = 8/128 (6%)

Query: 6   WSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALK 65
             DD+    +A      LL    +   ++++P  +   F++  ++    + +  A  A  
Sbjct: 336 DDDDDWNPCKAAGVCLMLL---ATCCEDDIVPHVL--PFIKEHIKNPDWRYRDAAVMAFG 390

Query: 66  NIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEA 125
            I+ G        +   A+P  ++L+  PS  +R+ A   +G +        +  +++  
Sbjct: 391 CILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL---LPEAAINDVY 447

Query: 126 LIPLLTQL 133
           L PLL  L
Sbjct: 448 LAPLLQCL 455

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 27/145 (18%), Positives = 51/145 (35%), Gaps = 10/145 (6%)

Query: 33  EEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLA 92
           + ++P        +    +D      +AA     +++   ED  V      +P   + + 
Sbjct: 319 QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPH---VLPFIKEHIK 375

Query: 93  SPSDDIREQAVCALGNVAADSARCRDLVLSE--EALIPLLTQLNKHAKLSMLRIATWTLS 150
           +P    R+ AV A G +           L       +P L +L K   + +   A WT+ 
Sbjct: 376 NPDWRYRDAAVMAFGCIL---EGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVG 432

Query: 151 NFCAGKPKPIFDQ--VRPALPALAQ 173
             C   P+   +   + P L  L +
Sbjct: 433 RICELLPEAAINDVYLAPLLQCLIE 457

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 26/282 (9%), Positives = 58/282 (20%), Gaps = 47/282 (16%)

Query: 48  LMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALG 107
           L+ +     +  +A  L+                 AV + ++  +  +   R+     LG
Sbjct: 27  LLDDHNSLKRISSARVLQLRG-----------GQDAVRLAIEFCSDKNYIRRDIGAFILG 75

Query: 108 NVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPA 167
            +        +          L           +   A  + +  C   P          
Sbjct: 76  QIKICKKCEDN------VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKI 125

Query: 168 LPALAQLVHSNDKEVMTDACRALFYLSEGT-----------NDEIQAVIEAGVCPRLVEL 216
           +             V      A+  +++              +       A         
Sbjct: 126 VEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYD 185

Query: 217 LGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTIS 276
                   +         +            +   L  L   L  N    +  D      
Sbjct: 186 NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNT---VYDDIIEAAG 242

Query: 277 NITAGNSEHIQAVIDAGLIGPLVNLLQNAE-FDIKNWAARAI 317
            +            D  L+  L  +L   +  +I   A   +
Sbjct: 243 ELG-----------DKTLLPVLDTMLYKFDDNEIITSAIDKL 273

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	447
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.85
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.83
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.79
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.74
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.68
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.59
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.51
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.47
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.41
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.36
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.34
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.27
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.24
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.18
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.17
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.16
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.05
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.0
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.95
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.87
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.79
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.72
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.48
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.44
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.62
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.56
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	96.96
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.74
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.72
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.7
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	96.29
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.13
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	95.02
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	94.13
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	91.34
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	89.29
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	88.8
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	87.32
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	87.24
d1juqa_	151	ADP-ribosylation factor binding protein Gga3 {Huma	86.69
d1juqa_	151	ADP-ribosylation factor binding protein Gga3 {Huma	80.18

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-46  Score=361.56  Aligned_cols=419  Identities=52%  Similarity=0.769  Sum_probs=382.0

Q ss_pred             cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228            2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH   81 (447)
Q Consensus         2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (447)
                      +..+++++...+..|+..++++++....+..+.+++.|++|.|+++++++.++.++..|+++|++++.+++.....+.+.
T Consensus        82 ~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~  161 (503)
T d1wa5b_          82 TQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDA  161 (503)
T ss_dssp             HHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhC
Confidence            45678899999999999999999877677788999999999999999876658899999999999999888899999999


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCC-CCCC
Q 013228           82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGK-PKPI  160 (447)
Q Consensus        82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~  160 (447)
                      |+++.++.++.+++.+++..++|+|+|++.+++..+..+.+.|++++++.++ .+.+..+++.++|++.+++... +...
T Consensus       162 g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll-~~~~~~~~~~~~~~l~nl~~~~~~~~~  240 (503)
T d1wa5b_         162 DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQPD  240 (503)
T ss_dssp             TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred             CChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhc-ccCCHHHHHHHHHHHHHHhcCCccchH
Confidence            9999999999999999999999999999999999999999999999999999 6677889999999999999876 4555


Q ss_pred             hhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCCh
Q 013228          161 FDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD  240 (447)
Q Consensus       161 ~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~  240 (447)
                      .....+++|.+..++.+.+++++..+++++.+++...++....+.+.|+++.++.++.++++.++..++.++++++.+.+
T Consensus       241 ~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~  320 (503)
T d1wa5b_         241 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND  320 (503)
T ss_dssp             HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHH
Confidence            56678999999999999999999999999999998888877889999999999999999999999999999999999988


Q ss_pred             hhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHh
Q 013228          241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNA  320 (447)
Q Consensus       241 ~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l  320 (447)
                      .....+++.|+++.+..++.++ ++.++..++|+++|++.++++....+++.|+++.++.++.+++.+++..|+|+|.|+
T Consensus       321 ~~~~~~~~~~~l~~l~~ll~~~-~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl  399 (503)
T d1wa5b_         321 LQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNA  399 (503)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHhhhccchHHHHHHHhcCC-CHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHH
Confidence            8888899999999999999998 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCC--CHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHH
Q 013228          321 TFGG--THEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIEN  398 (447)
Q Consensus       321 ~~~~--~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~  398 (447)
                      +..+  .++....+.+.|+++.|+++|.+.++++...++++|.++++.++......  ....+++...|++.|+++.|+.
T Consensus       400 ~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~--~~~~~~~~~~iee~g~~~~i~~  477 (503)
T d1wa5b_         400 SSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEAR--GLNINENADFIEKAGGMEKIFN  477 (503)
T ss_dssp             HHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHH--TCSSCHHHHHHHHTTHHHHHHG
T ss_pred             HhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhh--cccchHHHHHHHHCCCHHHHHH
Confidence            8743  35677888999999999999999999999999999999998776543322  1345778999999999999999


Q ss_pred             HhcCCCHHHHHHHHHHHHHhcCCCCC
Q 013228          399 LRSHDNDEIHEKSVKILETYWCGRVA  424 (447)
Q Consensus       399 l~~~~~~~v~~~a~~~l~~~~~~~~~  424 (447)
                      |++++++++++.|..++++||+++||
T Consensus       478 Lq~~~~~~i~~~A~~il~~~f~~~~~  503 (503)
T d1wa5b_         478 CQQNENDKIYEKAYKIIETYFGEEED  503 (503)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHSSSCC-
T ss_pred             HHcCCCHHHHHHHHHHHHHHcCCcCC
Confidence            99999999999999999999987764

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.2e-45  Score=348.84  Aligned_cols=412  Identities=45%  Similarity=0.734  Sum_probs=375.4

Q ss_pred             CcccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228            1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID   80 (447)
Q Consensus         1 lv~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (447)
                      +|+.+.|++++.+..|+.+++++++...++..+.+++.|++|.|+++|++.+++++|..|+++|.+++.++++.+..+++
T Consensus        18 lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~   97 (434)
T d1q1sc_          18 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD   97 (434)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhh
Confidence            36778999999999999999999887655567889999999999999987655899999999999999988899999999


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccc----hhHHHHHHHHHHHhcCCC
Q 013228           81 HGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAK----LSMLRIATWTLSNFCAGK  156 (447)
Q Consensus        81 ~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~----~~~~~~a~~~L~~l~~~~  156 (447)
                      .|+++.++.++.++++++++.++++|++++.+++..+..+.+.++++.++..+.....    ....+.++|++.+++...
T Consensus        98 ~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~  177 (434)
T d1q1sc_          98 GGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK  177 (434)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCC
T ss_pred             ccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999999999999999999999899999999999999999954332    346677899999999876


Q ss_pred             -CCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHh
Q 013228          157 -PKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNI  235 (447)
Q Consensus       157 -~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l  235 (447)
                       +........+++|.+..++.+++++++..+++++++++..+......+...|+++.++.++.++++.++..++.+++++
T Consensus       178 ~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l  257 (434)
T d1q1sc_         178 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI  257 (434)
T ss_dssp             TTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhH
Confidence             3444455688999999999999999999999999999988877777778889999999999999999999999999999


Q ss_pred             hcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHH
Q 013228          236 AAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAAR  315 (447)
Q Consensus       236 ~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~  315 (447)
                      +.+++.....+++.|+++.+..++.++ +.+++..++|++++++...++....+.+.|+++.++.++.+++++++..|++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~  336 (434)
T d1q1sc_         258 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAW  336 (434)
T ss_dssp             TTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHH
T ss_pred             HhhhhHHHHHHHhccccchHHHhhccc-chhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHH
Confidence            998888888899999999999999998 9999999999999999988888888999999999999999999999999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHH
Q 013228          316 AISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEK  395 (447)
Q Consensus       316 aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  395 (447)
                      +|.+++...+++....+.+.|+++.|++++++.+++++..++++|.++++.++...       ..+++...+++.|+++.
T Consensus       337 ~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~-------~~~~~~~~~~~~~~~~~  409 (434)
T d1q1sc_         337 AITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-------ETEKLSIMIEECGGLDK  409 (434)
T ss_dssp             HHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTT-------CHHHHHHHHHHTTSHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcC-------CcHHHHHHHHHcCCHHH
Confidence            99999988888888999999999999999999999999999999999998876543       45668999999999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhcC
Q 013228          396 IENLRSHDNDEIHEKSVKILETYWC  420 (447)
Q Consensus       396 l~~l~~~~~~~v~~~a~~~l~~~~~  420 (447)
                      |+.|++|+++++++.|..+|++||.
T Consensus       410 i~~L~~~~n~~i~~~a~~il~~~f~  434 (434)
T d1q1sc_         410 IEALQRHENESVYKASLNLIEKYFS  434 (434)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHCC
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999984

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4e-34  Score=274.50  Aligned_cols=362  Identities=26%  Similarity=0.345  Sum_probs=315.7

Q ss_pred             cccccC-CCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228            2 VAGVWS-DDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID   80 (447)
Q Consensus         2 v~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (447)
                      +..+++ .++.++..|+++|.+++++. +.....+...|+++.++.+|.+++ ++++..|+|+|++++..+++.+..+.+
T Consensus       125 v~~l~~~~~~~iq~~a~~~L~ni~~~~-~~~~~~~~~~g~i~~l~~lL~s~~-~~i~~~a~~~L~nia~~~~~~r~~l~~  202 (503)
T d1wa5b_         125 VEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDYRDYVLQ  202 (503)
T ss_dssp             HHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHhCCChHHHHHHhcCCC-hhHHHHHHHHHHHHhhhhHHHHHHHHh
Confidence            455654 56889999999999999875 556777889999999999999999 899999999999999988999999999


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCC
Q 013228           81 HGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPI  160 (447)
Q Consensus        81 ~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~  160 (447)
                      .|+++.|+.++.+.++.+++.++|+|.+++.............++++.++..+ .+.+.+++..++|++.+++...+...
T Consensus       203 ~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l-~~~d~~~~~~~~~~l~~l~~~~~~~~  281 (503)
T d1wa5b_         203 CNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSDGPQEAI  281 (503)
T ss_dssp             TTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred             hcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHhhccCCchhh
Confidence            99999999999999999999999999999976544444444567899999988 77888999999999999998653322


Q ss_pred             -hhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCC
Q 013228          161 -FDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGD  239 (447)
Q Consensus       161 -~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~  239 (447)
                       .....++++.++.++.++++.++..++.++++++...+.....+.+.|+++.+..++.++++.++..++++++|++.++
T Consensus       282 ~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~  361 (503)
T d1wa5b_         282 QAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN  361 (503)
T ss_dssp             HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             hhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcc
Confidence             2334789999999999999999999999999999888888888889999999999999999999999999999999999


Q ss_pred             hhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcC---CHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHH
Q 013228          240 DFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAG---NSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARA  316 (447)
Q Consensus       240 ~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~---~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~a  316 (447)
                      +.....+++.++++.++.++.++ +.+++.+++|+++|++..   .++.+..+++.|+++.+++++.+.++++...++.+
T Consensus       362 ~~~~~~i~~~~~l~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~  440 (503)
T d1wa5b_         362 TEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDA  440 (503)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHccccchhHHhcccC-ChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHH
Confidence            88888899999999999999999 999999999999999862   35678889999999999999999999999999999


Q ss_pred             HHHhcCCC----------CHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 013228          317 ISNATFGG----------THEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVG  367 (447)
Q Consensus       317 L~~l~~~~----------~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~  367 (447)
                      |.++...+          .......+.+.|+++.|..+..+++.+++..|.+.|..++..+
T Consensus       441 l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~~il~~~f~~~  501 (503)
T d1wa5b_         441 LENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEE  501 (503)
T ss_dssp             HHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSC
T ss_pred             HHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc
Confidence            99886422          1234456778899999999999999999999999988877543

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-32  Score=265.61  Aligned_cols=395  Identities=17%  Similarity=0.162  Sum_probs=338.4

Q ss_pred             CcccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228            1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID   80 (447)
Q Consensus         1 lv~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (447)
                      |+.+|++++++++..|+++|.+++... +.....+.+.|+++.|+.+|++++ ++++..++++|.+++..+++.+..+..
T Consensus       106 Li~lL~~~~~~v~~~a~~aL~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~  183 (529)
T d1jdha_         106 LVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLIILA  183 (529)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHhhccc-chhhhHHHhcCCchHHHHHHHccC-hHHHHHHHHHHHHHhhhhhHHHHHHHh
Confidence            356789999999999999999999874 556677789999999999999999 999999999999999888899999999


Q ss_pred             CCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCC
Q 013228           81 HGAVPIFVKLLAS-PSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKP  159 (447)
Q Consensus        81 ~~~i~~L~~ll~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~  159 (447)
                      .|+++.++.++.. +++.++..+++++.+++.+.. .+..+.+.|+++.++.++ .+.+.+++..+++++.+++....  
T Consensus       184 ~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~-~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~l~~ls~~~~--  259 (529)
T d1jdha_         184 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS-NKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAAT--  259 (529)
T ss_dssp             TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTT-HHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHTTCT--
T ss_pred             cccchHHHHHHHhhhhHHHHHHHHHHHhhhhcccc-ccchhhhhhhhhhHHHHh-cccchhhhhhhhhHHHhcccccc--
Confidence            9999999999965 567899999999999997654 677888999999999999 67788999999999999986542  


Q ss_pred             ChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcC--CCCchhHhHHHHHHHHhhc
Q 013228          160 IFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLG--HPSPSVLTRALQTVVNIAA  237 (447)
Q Consensus       160 ~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~--~~~~~v~~~a~~~l~~l~~  237 (447)
                      ......++++.+++++.++++.++..++++|++++..++.....+.+.++++.++..+.  ++.+.++..++.++++++.
T Consensus       260 ~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~  339 (529)
T d1jdha_         260 KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS  339 (529)
T ss_dssp             TCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred             chhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccc
Confidence            22234789999999999999999999999999999888777777888999999999884  4667889999999999996


Q ss_pred             CChh---hHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCc--------
Q 013228          238 GDDF---QTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAE--------  306 (447)
Q Consensus       238 ~~~~---~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~--------  306 (447)
                      ..+.   ....+...++++.++.++.++.+..++..+++++.|++.. ++....+.+.|+++.+++++.+.+        
T Consensus       340 ~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~-~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~  418 (529)
T d1jdha_         340 RHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQDTQRRTS  418 (529)
T ss_dssp             SSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHHTTHHHHHHHHHHHHHHHHC----
T ss_pred             hhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchh-hhhhhhhhhcccHHHHHHHHhcCCHHHHHHHH
Confidence            6542   3455667899999999998875677888999999999775 456678889999999999997543        


Q ss_pred             --------------hhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhh
Q 013228          307 --------------FDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKN  372 (447)
Q Consensus       307 --------------~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~  372 (447)
                                    .++...++.++..++.  .+..+..+.+.|+++.|++++.+++++++..++++|.++....+    
T Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~al~~la~--~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~----  492 (529)
T d1jdha_         419 MGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE----  492 (529)
T ss_dssp             -------CBTTBCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHH----
T ss_pred             hhhhhHHhhcccchHHHHHHHHHHHHHHcc--CHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcChh----
Confidence                          3456677778888876  56777778889999999999999999999999999999875432    


Q ss_pred             hhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013228          373 MDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETY  418 (447)
Q Consensus       373 ~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~  418 (447)
                                .++.+.+.|+++.|.+++++++++++..|..+|.++
T Consensus       493 ----------~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~l  528 (529)
T d1jdha_         493 ----------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             ----------HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             ----------hHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence                      267888999999999999999999999999998764

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.2e-33  Score=263.12  Aligned_cols=359  Identities=28%  Similarity=0.402  Sum_probs=309.5

Q ss_pred             cccccC-CCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228            2 VAGVWS-DDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID   80 (447)
Q Consensus         2 v~~l~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (447)
                      ++.|++ +++++|..|+++|.++++.. ++....+++.|+++.++++|++++ +++++.|+++|++++.++++.+..+.+
T Consensus        62 v~lL~~~~~~~v~~~a~~~L~~la~~~-~~~~~~i~~~~~i~~l~~~L~~~~-~~~~~~a~~~L~nl~~~~~~~~~~i~~  139 (434)
T d1q1sc_          62 VSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIK  139 (434)
T ss_dssp             HHHTTCGGGHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHccCCCHHHHHHHHHHHHHHhcCC-hhhhhHhhhccchhhhhhccccCC-HHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            455654 56889999999999999774 566788899999999999999998 899999999999999988999999999


Q ss_pred             CCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCC
Q 013228           81 HGAVPIFVKLLASPS-----DDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAG  155 (447)
Q Consensus        81 ~~~i~~L~~ll~~~~-----~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  155 (447)
                      .|+++.++.++...+     ......+++++.+++.............++++.+..++ .+.+++++..+++++.+++..
T Consensus       140 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~~~~~a~~~l~~l~~~  218 (434)
T d1q1sc_         140 HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAISYLTDG  218 (434)
T ss_dssp             TTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTSS
T ss_pred             hhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHH-hccccchhhhHHhhhcccchh
Confidence            999999999997643     35667889999999976654444444456678888888 777889999999999999977


Q ss_pred             CCCCCh-hhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHH
Q 013228          156 KPKPIF-DQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVN  234 (447)
Q Consensus       156 ~~~~~~-~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~  234 (447)
                      .+.... ....+++|.++.+++++++.++..+++++.+++..++.....+.+.|+++.+..++.++++.++..+++++++
T Consensus       219 ~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~  298 (434)
T d1q1sc_         219 PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSN  298 (434)
T ss_dssp             CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHH
T ss_pred             hhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhh
Confidence            532222 2337899999999999999999999999999998887777788899999999999999999999999999999


Q ss_pred             hhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCchhHHHHH
Q 013228          235 IAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITA-GNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWA  313 (447)
Q Consensus       235 l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a  313 (447)
                      ++...+.....+.+.|+++.++.++.++ +.+++..++|+++|++. .+.+....+.+.|+++.|++++.+++++++..+
T Consensus       299 l~~~~~~~~~~i~~~~~i~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~  377 (434)
T d1q1sc_         299 ITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVI  377 (434)
T ss_dssp             HTTSCHHHHHHHHHTTCHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHH
T ss_pred             hccccchhHHHHhhhhhHHHHHHHHhcc-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHH
Confidence            9998888888899999999999999998 99999999999999987 567778889999999999999999999999999


Q ss_pred             HHHHHHhcC-----CCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHH
Q 013228          314 ARAISNATF-----GGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKIL  364 (447)
Q Consensus       314 ~~aL~~l~~-----~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~  364 (447)
                      +++|.++..     ...+.....+.+.|+++.|..+..+++++++..|.++|.+.+
T Consensus       378 l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~~f  433 (434)
T d1q1sc_         378 LDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF  433 (434)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            999999864     223344566778899999999999999999999999987764

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-32  Score=261.99  Aligned_cols=397  Identities=16%  Similarity=0.144  Sum_probs=333.9

Q ss_pred             cccc-CCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228            3 AGVW-SDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH   81 (447)
Q Consensus         3 ~~l~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (447)
                      ..|. +++++++..|+.+|.+++.+  .+....+++.|++|.|+++|++++ ++++..|+++|++++.+++..+..+.+.
T Consensus        66 ~~L~~~~~~~~~~~a~~~L~~l~~~--~~~~~~i~~~g~i~~Li~lL~~~~-~~v~~~a~~aL~~l~~~~~~~~~~~~~~  142 (529)
T d1jdha_          66 RTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGAKMAVRLA  142 (529)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHCCCHHHHHHHhCCCC-HHHHHHHHHHHHHhhcccchhhhHHHhc
Confidence            3453 46789999999999999865  667788999999999999999999 8999999999999999888888999999


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCCh
Q 013228           82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIF  161 (447)
Q Consensus        82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~  161 (447)
                      |+++.|+.++.+++++++..++++|.+++..++..+..+...|++++++.++..+.+..++..+++++.+++.+......
T Consensus       143 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~  222 (529)
T d1jdha_         143 GGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPA  222 (529)
T ss_dssp             THHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHH
T ss_pred             CCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccch
Confidence            99999999999999999999999999999888888888899999999999997777788999999999999987644444


Q ss_pred             hhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChh
Q 013228          162 DQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDF  241 (447)
Q Consensus       162 ~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~  241 (447)
                      ....++++.+..++.+++..++..+++++.+++......   ....|+++.|+.++.+++..++..++++|++++..++.
T Consensus       223 ~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~---~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~  299 (529)
T d1jdha_         223 IVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK  299 (529)
T ss_dssp             HHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHH
T ss_pred             hhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccch---hhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhH
Confidence            455789999999999999999999999999998554322   22247899999999999999999999999999998888


Q ss_pred             hHHHHHhcCChHHHHHhhcc-CCchhHHHHHHHHHHHHhcCCH---HHHHHHHHcCChHHHHHHHhcC-chhHHHHHHHH
Q 013228          242 QTQCIINCGALPYLLGLLIH-NHKKSIKTDACWTISNITAGNS---EHIQAVIDAGLIGPLVNLLQNA-EFDIKNWAARA  316 (447)
Q Consensus       242 ~~~~~~~~~~l~~l~~~l~~-~~~~~v~~~a~~~l~nl~~~~~---~~~~~l~~~~~~~~L~~~l~~~-~~~v~~~a~~a  316 (447)
                      ....+.+.++++.++..+.. +..+.++..+++++.+++...+   .....+...++++.++.++..+ +..++..++++
T Consensus       300 ~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~  379 (529)
T d1jdha_         300 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL  379 (529)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHH
Confidence            88888899999999998853 2267889999999999987432   2344566789999999999865 45788899999


Q ss_pred             HHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCH----------------------HHHHHHHHHHHHHHHhhhhhhhhh
Q 013228          317 ISNATFGGTHEQIKYLVREGCIKPLCDLLLCADP----------------------EIVTVFLKGLEKILKVGEAEKNMD  374 (447)
Q Consensus       317 L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~----------------------~~~~~a~~~l~~l~~~~~~~~~~~  374 (447)
                      +.+++..  ++....+.+.|+++.|++++.+.+.                      +++..+..++..+.....      
T Consensus       380 l~~l~~~--~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~~------  451 (529)
T d1jdha_         380 IRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVH------  451 (529)
T ss_dssp             HHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHH------
T ss_pred             Hhhcchh--hhhhhhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHccCHH------
Confidence            9999884  4567788899999999999865433                      455566666666643222      


Q ss_pred             hhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 013228          375 IAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWCG  421 (447)
Q Consensus       375 ~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  421 (447)
                              -+..+.+.|+++.|.+++.+++++++..|..+|..+...
T Consensus       452 --------~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~  490 (529)
T d1jdha_         452 --------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD  490 (529)
T ss_dssp             --------HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred             --------HHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcC
Confidence                    256777899999999999999999999999999887643

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.9e-27  Score=221.66  Aligned_cols=367  Identities=17%  Similarity=0.190  Sum_probs=279.7

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHH
Q 013228           39 GVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRD  118 (447)
Q Consensus        39 ~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~  118 (447)
                      ..+|.|+++|++++ ++++..|+++|++++.++++.+..+.+.|+++.|+++|++++++++..|+++|++|+.+++..+.
T Consensus         2 ~~ip~lv~~L~~~~-~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           2 LTIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CCHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CCHHHHHHHhCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            36899999999999 99999999999999998999999999999999999999999999999999999999988888999


Q ss_pred             HHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhh----------------ccCChhH
Q 013228          119 LVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLV----------------HSNDKEV  182 (447)
Q Consensus       119 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll----------------~~~~~~v  182 (447)
                      .+.+.|+++.++.++....+.+++..+++++.+++..... ........++.++..+                ...+..+
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v  159 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL-KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV  159 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSST-HHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhh-HHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHH
Confidence            9999999999999997778889999999999999987633 3333344444444332                3457889


Q ss_pred             HHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCC------CchhHhHHHHHHHHhhc-------------------
Q 013228          183 MTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHP------SPSVLTRALQTVVNIAA-------------------  237 (447)
Q Consensus       183 ~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~------~~~v~~~a~~~l~~l~~-------------------  237 (447)
                      +..+++++.+++...+.........|+++.++.++.+.      .......+...+.....                   
T Consensus       160 ~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  239 (457)
T d1xm9a1         160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhh
Confidence            99999999999977666554445567888888887431      11111111111111100                   


Q ss_pred             -------------------------------CChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHH--
Q 013228          238 -------------------------------GDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSE--  284 (447)
Q Consensus       238 -------------------------------~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~--  284 (447)
                                                     ........+...++++.++.++.+..++.++..+.+++.+++.....  
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~  319 (457)
T d1xm9a1         240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             hhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccch
Confidence                                           00111111223345677777776654788899999999999864321  


Q ss_pred             ---HHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCC------CHHHHHH
Q 013228          285 ---HIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCA------DPEIVTV  355 (447)
Q Consensus       285 ---~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~------~~~~~~~  355 (447)
                         ....+.+.|+++.|+.++.+++++++..+++++.+++..  ++....+. .++++.++.++...      +++++..
T Consensus       320 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~--~~~~~~i~-~~~i~~li~~L~~~~~~~~~~~~v~~~  396 (457)
T d1xm9a1         320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--PLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSS  396 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--GGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhC--hhHHHHHH-HhhHHHHHHHHhccccCcCCcHHHHHH
Confidence               223344689999999999999999999999999999984  34444444 46789999988642      3478999


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhc-CCCHHHHHHHHHHHHHhcCCCC
Q 013228          356 FLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRS-HDNDEIHEKSVKILETYWCGRV  423 (447)
Q Consensus       356 a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~-~~~~~v~~~a~~~l~~~~~~~~  423 (447)
                      ++.+|.++......             .++.+.+.|+++.|.++.. ++++++++.|..+|.++|...+
T Consensus       397 a~~~L~~l~~~~~~-------------~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~  452 (457)
T d1xm9a1         397 ACYTVRNLMASQPQ-------------LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE  452 (457)
T ss_dssp             HHHHHHHHHTTCTH-------------HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred             HHHHHHHHhcCCHH-------------HHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHh
Confidence            99999999865433             3677888999999999865 4678999999999999987665

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.7e-25  Score=207.24  Aligned_cols=358  Identities=16%  Similarity=0.156  Sum_probs=265.5

Q ss_pred             CcccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 013228            1 MVAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID   80 (447)
Q Consensus         1 lv~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   80 (447)
                      +|++|++++++++..|+++|.+++.++ ++.+..+.+.|++|.|+++|++++ +++|..|+++|.+++.++++++..+.+
T Consensus         7 lv~~L~~~~~~~~~~a~~~l~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~~L~~~~~~~~~~i~~   84 (457)
T d1xm9a1           7 AVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKLETRR   84 (457)
T ss_dssp             HHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCcHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            467899999999999999999999765 777899999999999999999999 999999999999999889999999999


Q ss_pred             CCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhc---------------cccchhHHHH
Q 013228           81 HGAVPIFVKLLAS-PSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLN---------------KHAKLSMLRI  144 (447)
Q Consensus        81 ~~~i~~L~~ll~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~---------------~~~~~~~~~~  144 (447)
                      .|+++.++.++.+ .+++++..++++|++++..... +..... .+++.++..+.               ...+..++..
T Consensus        85 ~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  162 (457)
T d1xm9a1          85 QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL-KEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN  162 (457)
T ss_dssp             TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSST-HHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred             CCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhh-HHHHHh-cccHHHHHHHHhhhhhhhcchhhhhcccccHHHHHH
Confidence            9999999998865 6889999999999999977653 333333 23444444431               3446788999


Q ss_pred             HHHHHHHhcCCCCCCChhh-HhhhHHHHHHhhccCC------hhHHHHHHHHHHHhcc----------------------
Q 013228          145 ATWTLSNFCAGKPKPIFDQ-VRPALPALAQLVHSND------KEVMTDACRALFYLSE----------------------  195 (447)
Q Consensus       145 a~~~L~~l~~~~~~~~~~~-~~~~l~~l~~ll~~~~------~~v~~~al~~l~~l~~----------------------  195 (447)
                      +++++.+++.......... ..++++.++.++++..      ......+...+.+...                      
T Consensus       163 a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (457)
T d1xm9a1         163 ATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT  242 (457)
T ss_dssp             HHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-----
T ss_pred             HHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhh
Confidence            9999999987753322222 2567788887775321      1111112111111110                      


Q ss_pred             ----------------------------CCcHHHHHHHHhCcHHHHHHhcCC-CCchhHhHHHHHHHHhhcCChh-----
Q 013228          196 ----------------------------GTNDEIQAVIEAGVCPRLVELLGH-PSPSVLTRALQTVVNIAAGDDF-----  241 (447)
Q Consensus       196 ----------------------------~~~~~~~~~~~~~~~~~L~~lL~~-~~~~v~~~a~~~l~~l~~~~~~-----  241 (447)
                                                  ........+...++++.++.++.. .++.++..+.+++.+++.....     
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~  322 (457)
T d1xm9a1         243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGM  322 (457)
T ss_dssp             -----------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHH
T ss_pred             HHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHH
Confidence                                        000000111222455666666643 5567788889999998865432     


Q ss_pred             hHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc------CchhHHHHHHH
Q 013228          242 QTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQN------AEFDIKNWAAR  315 (447)
Q Consensus       242 ~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~------~~~~v~~~a~~  315 (447)
                      ....+.+.++++.+++++.++ +..++..+++++++++... +....+ ..++++.++.++..      .+.+++..++.
T Consensus       323 ~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~l~~La~~~-~~~~~i-~~~~i~~li~~L~~~~~~~~~~~~v~~~a~~  399 (457)
T d1xm9a1         323 SQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRHP-LLHRVM-GNQVFPEVTRLLTSHTGNTSNSEDILSSACY  399 (457)
T ss_dssp             HHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSG-GGHHHH-HHHTHHHHHHTTTSCCSCSTTHHHHHHHHHH
T ss_pred             HHHHHHHcCChHHHHhhhcCc-cHHHHHHHHHHHHHHhhCh-hHHHHH-HHhhHHHHHHHHhccccCcCCcHHHHHHHHH
Confidence            234455679999999999999 9999999999999998753 444444 44689999999863      24578999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHcCChHHHHhhccCC-CHHHHHHHHHHHHHHHHh
Q 013228          316 AISNATFGGTHEQIKYLVREGCIKPLCDLLLCA-DPEIVTVFLKGLEKILKV  366 (447)
Q Consensus       316 aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~~~~~a~~~l~~l~~~  366 (447)
                      +|.+++.. +++..+.+.+.|+++.|+.++.+. ++.++..|..+|.+|+..
T Consensus       400 ~L~~l~~~-~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~  450 (457)
T d1xm9a1         400 TVRNLMAS-QPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS  450 (457)
T ss_dssp             HHHHHHTT-CTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred             HHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcC
Confidence            99999976 567788888999999999999775 678999999999999654

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.9e-20  Score=162.36  Aligned_cols=198  Identities=15%  Similarity=0.140  Sum_probs=175.4

Q ss_pred             CCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHH
Q 013228           50 REDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVK-LLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIP  128 (447)
Q Consensus        50 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~  128 (447)
                      +.+ .+.+..|+.+|.+++. +.+++..+...|++++++. ++.+++++++..|+++|++++.+++..+..+.+.|+++.
T Consensus        28 ~~~-~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~  105 (264)
T d1xqra1          28 AAD-QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRK  105 (264)
T ss_dssp             HHH-HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred             CCC-HHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH
Confidence            344 6889999999999997 7788889999999999886 778899999999999999999999989999999999999


Q ss_pred             HHHHhccccchhHHHHHHHHHHHhcCCCCCCCh-hhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHh
Q 013228          129 LLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIF-DQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEA  207 (447)
Q Consensus       129 l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~  207 (447)
                      ++.++.++.++.++..+++++.+++.+.+.... ....++++.++++++++++.++..++++|.+++..++.....+.+.
T Consensus       106 Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  185 (264)
T d1xqra1         106 LLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSM  185 (264)
T ss_dssp             HHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHT
T ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHh
Confidence            999997677889999999999999988743333 3458899999999999999999999999999998777777888999


Q ss_pred             CcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhc
Q 013228          208 GVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINC  249 (447)
Q Consensus       208 ~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~  249 (447)
                      |+++.|+.++.++++.++..++++|++++..++.....+...
T Consensus       186 ~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~  227 (264)
T d1xqra1         186 GMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREP  227 (264)
T ss_dssp             THHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCG
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence            999999999999999999999999999999888776655543

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.1e-19  Score=155.78  Aligned_cols=229  Identities=19%  Similarity=0.148  Sum_probs=188.0

Q ss_pred             cCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHH-hcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHH
Q 013228          177 SNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVE-LLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYL  255 (447)
Q Consensus       177 ~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~-lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l  255 (447)
                      ..+.+.+..|+.+|.+++... +....+...|+++.++. +++++++.++..|+++|++++.+++.....+.+.|+++.|
T Consensus        28 ~~~~~~~~~Al~~L~~L~~~~-d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L  106 (264)
T d1xqra1          28 AADQQEREGALELLADLCENM-DNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL  106 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSH-HHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCH-HHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence            446778889999999999654 44567889999998875 6788999999999999999999998888889999999999


Q ss_pred             HHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHc
Q 013228          256 LGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVRE  335 (447)
Q Consensus       256 ~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~  335 (447)
                      +.++.+..++.++..+++++++++.+++.....+.+.|+++.|+.++.+++..++..++++|.+++.. +++....+.+.
T Consensus       107 v~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~  185 (264)
T d1xqra1         107 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSM  185 (264)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHT
T ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhc-cHHHHHHHHHh
Confidence            99997654889999999999999999888888999999999999999999999999999999999875 45677888899


Q ss_pred             CChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHH--hch---HHHHHHHhc--CCCHHHH
Q 013228          336 GCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEE--AEG---LEKIENLRS--HDNDEIH  408 (447)
Q Consensus       336 ~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~---~~~l~~l~~--~~~~~v~  408 (447)
                      |+++.|+.++++++++++..++++|.++....+...             ..+..  .+.   +..+.++..  ....+..
T Consensus       186 ~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~-------------~~~~~~~l~~~~~L~~~~~~~~~~~~~~e~~  252 (264)
T d1xqra1         186 GMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGV-------------RECREPELGLEELLRHRCQLLQQHEEYQEEL  252 (264)
T ss_dssp             THHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHH-------------HHHHCGGGCHHHHHHHHHHHHTTCGGGHHHH
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHH-------------HHHHHhhhhHHHHHHHHHHhccchHHHHHHH
Confidence            999999999999999999999999999987654432             11221  111   222222222  2345556


Q ss_pred             HHHHHHHHHhcC
Q 013228          409 EKSVKILETYWC  420 (447)
Q Consensus       409 ~~a~~~l~~~~~  420 (447)
                      +.+..+++++|.
T Consensus       253 ~~~~~ll~~~~~  264 (264)
T d1xqra1         253 EFCEKLLQTCFS  264 (264)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHHhcC
Confidence            788889988874

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=4.3e-18  Score=165.34  Aligned_cols=372  Identities=12%  Similarity=0.099  Sum_probs=260.2

Q ss_pred             ccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCCh
Q 013228            5 VWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAV   84 (447)
Q Consensus         5 l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i   84 (447)
                      ++++++.++..|+.++..++.....    ......++|.+.+++++++ +.+|..++.+|++++..   .........++
T Consensus       212 ~~d~~~~vr~~a~~~l~~i~~~~~~----~~~~~~i~~~l~~~~~D~~-~~Vr~~~~~~l~~l~~~---~~~~~~~~~l~  283 (588)
T d1b3ua_         212 ASDEQDSVRLLAVEACVNIAQLLPQ----EDLEALVMPTLRQAAEDKS-WRVRYMVADKFTELQKA---VGPEITKTDLV  283 (588)
T ss_dssp             HTCSCHHHHTTHHHHHHHHHHHSCH----HHHHHHTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHH---HCHHHHHHTHH
T ss_pred             hcCCchhhHHHHHHHHHHhhccCCH----HHHHHHHHHHHHHhccccc-HHHHHHHHHhHHHHHHH---hhhhhhhhhhh
Confidence            3445555555555555555443211    1112236777778877777 78888888888887652   11223334678


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhcCC-hhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhh
Q 013228           85 PIFVKLLASPSDDIREQAVCALGNVAADS-ARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQ  163 (447)
Q Consensus        85 ~~L~~ll~~~~~~i~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  163 (447)
                      +.+..++.++++++|..++..+..++..- ...+....-...++.+...+ .+.+..++..++.++..++...  .....
T Consensus       284 ~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~-~d~~~~vr~~~~~~l~~~~~~~--~~~~~  360 (588)
T d1b3ua_         284 PAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPIL--GKDNT  360 (588)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHH--CHHHH
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhh-cCCChHHHHHHHHHHhhhhhcc--chhHH
Confidence            88889999999999999999999887432 11222222234566666666 6778888888887777765321  12233


Q ss_pred             HhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhH
Q 013228          164 VRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQT  243 (447)
Q Consensus       164 ~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~  243 (447)
                      ...++|.+..+++++++.++..++.++..+.......   -....+++.+...+.+.++.+|..++.+++.++.....  
T Consensus       361 ~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~---~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~--  435 (588)
T d1b3ua_         361 IEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV--  435 (588)
T ss_dssp             HHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG--
T ss_pred             HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcchh---hhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCh--
Confidence            4668899999999999999999888877766432211   11235678889999999999999999999988742110  


Q ss_pred             HHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcC
Q 013228          244 QCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAG-NSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATF  322 (447)
Q Consensus       244 ~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~  322 (447)
                       ......+.+.+..++.++ ...+|..|+++++.++.. +++    .....+++.+.+++.++++..|..++.++..+..
T Consensus       436 -~~~~~~l~~~l~~~l~D~-~~~VR~~A~~~L~~l~~~~~~~----~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~  509 (588)
T d1b3ua_         436 -EFFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGKE----WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSE  509 (588)
T ss_dssp             -GGCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH----HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHH
T ss_pred             -HhHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHhCcH----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence             012223456778888888 899999999999999763 222    2234488999999999999999999999998875


Q ss_pred             CCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcC
Q 013228          323 GGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSH  402 (447)
Q Consensus       323 ~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~  402 (447)
                      ....    ......+++.+..+++++.+.+|..++++|..+....+...           +.     ....+.+..++++
T Consensus       510 ~~~~----~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~~-----------~~-----~~i~~~l~~L~~D  569 (588)
T d1b3ua_         510 VCGQ----DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNST-----------LQ-----SEVKPILEKLTQD  569 (588)
T ss_dssp             HHHH----HHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHH-----------HH-----HHHHHHHHHHTTC
T ss_pred             HcCh----HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcHh-----------HH-----HHHHHHHHHHcCC
Confidence            3222    22334589999999999999999999999999976543211           12     3345788899999


Q ss_pred             CCHHHHHHHHHHHHHh
Q 013228          403 DNDEIHEKSVKILETY  418 (447)
Q Consensus       403 ~~~~v~~~a~~~l~~~  418 (447)
                      ++++|+..|.+++..+
T Consensus       570 ~d~dVr~~A~~al~~l  585 (588)
T d1b3ua_         570 QDVDVKYFAQEALTVL  585 (588)
T ss_dssp             SSHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            9999999999998865

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.1e-16  Score=155.28  Aligned_cols=375  Identities=12%  Similarity=0.098  Sum_probs=274.6

Q ss_pred             ccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCC
Q 013228            3 AGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHG   82 (447)
Q Consensus         3 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~   82 (447)
                      ++++++++.+|..++..+..++..-.    .......+++.+..++++++ +.+|..|+.++..++...+..   .....
T Consensus       171 ~l~~D~~~~VR~~a~~~l~~~~~~~~----~~~~~~~l~~~l~~l~~d~~-~~vr~~a~~~l~~i~~~~~~~---~~~~~  242 (588)
T d1b3ua_         171 NLCSDDTPMVRRAAASKLGEFAKVLE----LDNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE---DLEAL  242 (588)
T ss_dssp             HHHTCSCHHHHHHHHHHHHHHHHTSC----HHHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH---HHHHH
T ss_pred             HHhccCCHHHHHHHHHHHHHHHHHhc----HHHHHHHHHHHHHHHhcCCc-hhhHHHHHHHHHHhhccCCHH---HHHHH
Confidence            35678889999999999999987531    12233457888888888888 899999999999987532221   12223


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCCh-
Q 013228           83 AVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIF-  161 (447)
Q Consensus        83 ~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~-  161 (447)
                      +++.+..++.++++.+|..++.+|++++..-+   ........++.+...+ .+.+.+++..++..+..++..-..... 
T Consensus       243 i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~ll-~d~~~~vr~~a~~~l~~~~~~l~~~~~~  318 (588)
T d1b3ua_         243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVG---PEITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENLSADCRE  318 (588)
T ss_dssp             THHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC---HHHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTSCTTTHH
T ss_pred             HHHHHHHhcccccHHHHHHHHHhHHHHHHHhh---hhhhhhhhhHHHHHHH-hccchHHHHHHHHHHHHHHHHHhhhhhh
Confidence            67888889999999999999999999874321   1122334577777777 778889999999999998876532222 


Q ss_pred             -hhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCCh
Q 013228          162 -DQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD  240 (447)
Q Consensus       162 -~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~  240 (447)
                       .....++|.+...+.+.++.++..+..++..++..-...   .....+++.+...+.++++.++..++..+..+.....
T Consensus       319 ~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~~---~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~  395 (588)
T d1b3ua_         319 NVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG  395 (588)
T ss_dssp             HHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH---HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSC
T ss_pred             hhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccchh---HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcc
Confidence             234678899999999999999999988887776322111   1223468899999999999999999888877764321


Q ss_pred             hhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHH
Q 013228          241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAG-NSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISN  319 (447)
Q Consensus       241 ~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~  319 (447)
                      .  ..+ ...+++.+..++.+. ++.+|..++.++..++.. +.+.    +...+.+.+..++.++...+|..|+.+|+.
T Consensus       396 ~--~~~-~~~ll~~l~~~~~d~-~~~~r~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~  467 (588)
T d1b3ua_         396 I--RQL-SQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVEF----FDEKLNSLCMAWLVDHVYAIREAATSNLKK  467 (588)
T ss_dssp             H--HHH-HHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGGG----CCHHHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred             h--hhh-hhHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHcChHh----HHHHHHHHHHhhccCCchhHHHHHHHHHHH
Confidence            1  111 124577888888888 999999999999988652 1111    112256667777888889999999999999


Q ss_pred             hcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHH
Q 013228          320 ATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENL  399 (447)
Q Consensus       320 l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l  399 (447)
                      ++....++.    ....+++.+.+++.+++...|..++.++..+.......                ......++.+.++
T Consensus       468 l~~~~~~~~----~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~----------------~~~~~ilp~ll~~  527 (588)
T d1b3ua_         468 LVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD----------------ITTKHMLPTVLRM  527 (588)
T ss_dssp             HHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH----------------HHHHHTHHHHHHG
T ss_pred             HHHHhCcHH----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChH----------------HHHHHHHHHHHHH
Confidence            976433332    22347888999999999999999999999887653321                1224568888999


Q ss_pred             hcCCCHHHHHHHHHHHHHhcC
Q 013228          400 RSHDNDEIHEKSVKILETYWC  420 (447)
Q Consensus       400 ~~~~~~~v~~~a~~~l~~~~~  420 (447)
                      ..++.+.|+..+.+.+..++.
T Consensus       528 ~~D~v~nVR~~a~~~l~~i~~  548 (588)
T d1b3ua_         528 AGDPVANVRFNVAKSLQKIGP  548 (588)
T ss_dssp             GGCSCHHHHHHHHHHHHHHGG
T ss_pred             cCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999998888764

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3.2e-13  Score=137.00  Aligned_cols=345  Identities=14%  Similarity=0.166  Sum_probs=210.9

Q ss_pred             HHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHh
Q 013228           11 NMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKL   90 (447)
Q Consensus        11 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l   90 (447)
                      .++..|..+|..++...+...    + .-+++.+.+.+.+++ +..|+.|+.+++.++.+..+.....+. .+++.++..
T Consensus       372 ~~r~~a~~~L~~l~~~~~~~i----l-~~~l~~l~~~l~s~~-~~~reaa~~alg~i~eg~~~~~~~~l~-~li~~l~~~  444 (888)
T d1qbkb_         372 NLRKCSAAALDVLANVYRDEL----L-PHILPLLKELLFHHE-WVVKESGILVLGAIAEGCMQGMIPYLP-ELIPHLIQC  444 (888)
T ss_dssp             SSHHHHHHHSTTTTTTCCSSS----H-HHHHHHHHHTTTSSS-HHHHHHHHHHHHHHTTTSHHHHTTTHH-HHHHHHHHH
T ss_pred             hHHHHHHHHHhhHhhhhHHHH----H-HHHHHHHHHhhccch-hHHHHHHHHHhhhhhhhHHHHhcccch-hhhHHHHHh
Confidence            456666666665554321111    1 113556666777888 899999999999998755443222222 367888888


Q ss_pred             hCCCCHHHHHHHHHHHHHhhcCChh-HHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHH
Q 013228           91 LASPSDDIREQAVCALGNVAADSAR-CRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALP  169 (447)
Q Consensus        91 l~~~~~~i~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~  169 (447)
                      +.++++.+|..++|+|+.++..... ..+. .-...++.++..+ .+.++.++..+++++.+++.............+++
T Consensus       445 l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~-~~~~~l~~ll~~l-~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~  522 (888)
T d1qbkb_         445 LSDKKALVRSITCWTLSRYAHWVVSQPPDT-YLKPLMTELLKRI-LDSNKRVQEAACSAFATLEEEACTELVPYLAYILD  522 (888)
T ss_dssp             TTSSCHHHHHHHHHHHHHTHHHHHSSCHHH-HTTTHHHHHHHHH-SSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHhhhhhhhh-hhhhhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            9999999999999999998742111 1111 1234677788877 66778999999999999886542222222233333


Q ss_pred             HHHHhhccCChhHHHH---------------------------------------------HHHHHHHhcc---------
Q 013228          170 ALAQLVHSNDKEVMTD---------------------------------------------ACRALFYLSE---------  195 (447)
Q Consensus       170 ~l~~ll~~~~~~v~~~---------------------------------------------al~~l~~l~~---------  195 (447)
                      .+...+...+...+..                                             .+.++..+..         
T Consensus       523 ~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~  602 (888)
T d1qbkb_         523 TLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPY  602 (888)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHH
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhh
Confidence            3333332222111111                                             1111111110         


Q ss_pred             ------------------------------C-CcHHH------------------HH-HHHhCcHHHHHHhcCCCCchhH
Q 013228          196 ------------------------------G-TNDEI------------------QA-VIEAGVCPRLVELLGHPSPSVL  225 (447)
Q Consensus       196 ------------------------------~-~~~~~------------------~~-~~~~~~~~~L~~lL~~~~~~v~  225 (447)
                                                    . ..+..                  .. +....+++.+...+.+.++.++
T Consensus       603 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr  682 (888)
T d1qbkb_         603 CEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVR  682 (888)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHH
Confidence                                          0 00000                  00 0111245555666677788899


Q ss_pred             hHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC
Q 013228          226 TRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNA  305 (447)
Q Consensus       226 ~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~  305 (447)
                      ..|..+++.++..........++ .+++.+...+.++ ...++..++|+++.++...++.....+. .+++.|+.+++.+
T Consensus       683 ~~a~~llgdl~~~~~~~~~~~l~-~~~~~l~~~L~~~-~~~v~~~a~~~ig~ia~~~~~~~~py~~-~il~~L~~il~~~  759 (888)
T d1qbkb_         683 QSSFALLGDLTKACFQHVKPCIA-DFMPILGTNLNPE-FISVCNNATWAIGEISIQMGIEMQPYIP-MVLHQLVEIINRP  759 (888)
T ss_dssp             HHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHTCCGG-GHHHHHHHHHHHHHHHHHTGGGGGGGSH-HHHHHHHHHHTCT
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHhCcC-CHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHcCC
Confidence            99998888887655433222222 3667788888877 8899999999999998744343333333 3788888999865


Q ss_pred             --chhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccC-CCHHHHHHHHHHHHHHHHhhhh
Q 013228          306 --EFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC-ADPEIVTVFLKGLEKILKVGEA  369 (447)
Q Consensus       306 --~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~~~~~a~~~l~~l~~~~~~  369 (447)
                        +..++.+++.+|+.++.. .++.....+. .+++.++..+.. .+.+-+..+..++..++...+.
T Consensus       760 ~~~~~v~~n~~~~lgrl~~~-~p~~~~~~l~-~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p~  824 (888)
T d1qbkb_         760 NTPKTLLENTAITIGRLGYV-CPQEVAPMLQ-QFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPS  824 (888)
T ss_dssp             TCCHHHHHHHHHHHHHHHHH-CHHHHGGGGG-GTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCGG
T ss_pred             CccHHHHHHHHHHHHHHHHH-CHHHHHhhHH-HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCcH
Confidence              355889999999999876 3444322222 366777776655 4555577889999999876554

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.3e-12  Score=134.98  Aligned_cols=403  Identities=12%  Similarity=0.083  Sum_probs=260.1

Q ss_pred             cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228            2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH   81 (447)
Q Consensus         2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (447)
                      ++.+++.|++.|+.|+.-|.+.+... ....+.-....+++.|+++|++++ ++||..|+.+|+.++..-++...    .
T Consensus         9 l~k~~~~D~d~R~ma~~dl~~~l~~~-~~~~~~~~~~~i~~~ll~~L~D~~-~~Vq~~A~k~l~~l~~~~~~~~~----~   82 (1207)
T d1u6gc_           9 LEKMTSSDKDFRFMATNDLMTELQKD-SIKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEYQV----E   82 (1207)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHHTSSS-CCSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHHHH----H
T ss_pred             HHhcCCCCHhHHHHHHHHHHHHHhhc-ccccChHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCcHhhH----H
Confidence            45689999999999999999887654 222211122347899999999988 99999999999999875443221    2


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChh------HHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCC
Q 013228           82 GAVPIFVKLLASPSDDIREQAVCALGNVAADSAR------CRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAG  155 (447)
Q Consensus        82 ~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~------~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~  155 (447)
                      .+++.|+..+.+++...+..+..+|..+...-+.      ....+ ....++.+...+....+..++..++.++..+...
T Consensus        83 ~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~  161 (1207)
T d1u6gc_          83 TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR  161 (1207)
T ss_dssp             HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Confidence            3577888888888888888888888776532111      01111 1113444555555566778888999999988776


Q ss_pred             CCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhc-CCCCchhHhHHHHHHHH
Q 013228          156 KPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELL-GHPSPSVLTRALQTVVN  234 (447)
Q Consensus       156 ~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~v~~~a~~~l~~  234 (447)
                      .+.........+++.++..+.++++.++..++.+++.++...+...    -..+++.++..+ .+.+...+..++.+++.
T Consensus       162 ~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~----~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~  237 (1207)
T d1u6gc_         162 QGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV----FVDLIEHLLSELSKNDSMSTTRTYIQCIAA  237 (1207)
T ss_dssp             TCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHH
T ss_pred             hhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHH----HHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence            5444444456788889999999999999999999999986544321    123456666555 45566778888899999


Q ss_pred             hhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCH----HHHHHHHHc------------------
Q 013228          235 IAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNS----EHIQAVIDA------------------  292 (447)
Q Consensus       235 l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~----~~~~~l~~~------------------  292 (447)
                      ++...+...... -..+++.+...+.+. +.++|..+..++..++...+    .....++..                  
T Consensus       238 l~~~~~~~~~~~-l~~i~~~l~~~l~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~  315 (1207)
T d1u6gc_         238 ISRQAGHRIGEY-LEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDE  315 (1207)
T ss_dssp             HHHHSSGGGTTS-CTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC----------
T ss_pred             HHHHcchhhHHH-HHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhhhHHH
Confidence            887554332211 135678888999888 88999999988888775322    111111110                  


Q ss_pred             --------------CChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHH
Q 013228          293 --------------GLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLK  358 (447)
Q Consensus       293 --------------~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~  358 (447)
                                    ...+..........+.+|..++.+|..+..... +....+ -..+++.+...+.+.++.++..++.
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~-~~l~~~-~~~~~~~L~~~l~d~~~~vr~~~~~  393 (1207)
T d1u6gc_         316 DENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRH-EMLPEF-YKTVSPALISRFKEREENVKADVFH  393 (1207)
T ss_dssp             --------------------------CTTHHHHHHHHHHHHHHTTCC-TTHHHH-HTTTHHHHHSTTSCSSSHHHHHHHH
T ss_pred             HHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHH-HHHHHH-HHHHHHHHHHHhcCCchHHHHHHHH
Confidence                          001111111223456789999999999887533 222322 2357899999999999999999999


Q ss_pred             HHHHHHHhhhhhhhhhhh----cccccHHHHHHHH--hchHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 013228          359 GLEKILKVGEAEKNMDIA----IGDVNQYAQLVEE--AEGLEKIENLRSHDNDEIHEKSVKILETYWC  420 (447)
Q Consensus       359 ~l~~l~~~~~~~~~~~~~----~~~~~~~~~~i~~--~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  420 (447)
                      ++..++............    ..... ....+..  ...++.+.+...+.++.++..+..++..+..
T Consensus       394 ~l~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~  460 (1207)
T d1u6gc_         394 AYLSLLKQTRPVQSWLCDPDAMEQGET-PLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVN  460 (1207)
T ss_dssp             HHHHHHHHHCCC------------CCC-HHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccchhhhhhchHHHHhhcc-hHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence            999888654322110000    00000 0111111  2346667777888889998888888877654

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=4.2e-11  Score=103.36  Aligned_cols=256  Identities=14%  Similarity=0.090  Sum_probs=194.4

Q ss_pred             cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHH
Q 013228           38 FGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCR  117 (447)
Q Consensus        38 ~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~  117 (447)
                      ....+.|+++|++++ +.+|..|+.+|+.+..  +         ..++.|+.+++++++.+|..|+.+|+.+....... 
T Consensus        18 ~~~~~~L~~~L~d~~-~~vR~~A~~~L~~~~~--~---------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~-   84 (276)
T d1oyza_          18 KLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE-   84 (276)
T ss_dssp             TSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH-
T ss_pred             cCCHHHHHHHhcCCC-HHHHHHHHHHHHhhCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc-
Confidence            346778999999999 9999999999998854  2         35799999999999999999999999987543321 


Q ss_pred             HHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 013228          118 DLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGT  197 (447)
Q Consensus       118 ~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~  197 (447)
                      ..     .++.+...+.+++++.++..++.++..++...+    ......++.+...+.+.++.++..++.+++.+..  
T Consensus        85 ~~-----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~--  153 (276)
T d1oyza_          85 DN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--  153 (276)
T ss_dssp             HH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----
T ss_pred             cc-----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccc----hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch--
Confidence            11     244566666678899999999999999886531    2235577888888889999999988888876542  


Q ss_pred             cHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHH
Q 013228          198 NDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISN  277 (447)
Q Consensus       198 ~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~n  277 (447)
                               ...++.+..++...++.++..+...+..+......         ..+.+...+.+. +..++..+.++++.
T Consensus       154 ---------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~al~~  214 (276)
T d1oyza_         154 ---------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDK-NEEVRIEAIIGLSY  214 (276)
T ss_dssp             ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCS-CHHHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cchhhhhhhhhh-hhhhhhhhccccch
Confidence                     24567788888888899998888888877665542         233466777777 89999999999887


Q ss_pred             HhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccC-CCHHHHHHH
Q 013228          278 ITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC-ADPEIVTVF  356 (447)
Q Consensus       278 l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~~~~~a  356 (447)
                      +..           ...++.|++.+.  ++.+|..++++|+.+..            .+.++.|..++.+ ++.+++..|
T Consensus       215 ~~~-----------~~~~~~L~~~l~--d~~vr~~a~~aL~~ig~------------~~~~~~L~~~l~~~~d~~vr~~A  269 (276)
T d1oyza_         215 RKD-----------KRVLSVLCDELK--KNTVYDDIIEAAGELGD------------KTLLPVLDTMLYKFDDNEIITSA  269 (276)
T ss_dssp             TTC-----------GGGHHHHHHHHT--SSSCCHHHHHHHHHHCC------------GGGHHHHHHHHTTSSCCHHHHHH
T ss_pred             hhh-----------hhhHHHHHHHhC--ChHHHHHHHHHHHHcCC------------HHHHHHHHHHHccCCCHHHHHHH
Confidence            632           236777888776  45689999999998853            1367788887766 567899988


Q ss_pred             HHHHH
Q 013228          357 LKGLE  361 (447)
Q Consensus       357 ~~~l~  361 (447)
                      ++.|.
T Consensus       270 ~~~L~  274 (276)
T d1oyza_         270 IDKLK  274 (276)
T ss_dssp             HHHHT
T ss_pred             HHHHc
Confidence            88764

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=1.8e-10  Score=99.37  Aligned_cols=248  Identities=14%  Similarity=0.093  Sum_probs=183.3

Q ss_pred             cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 013228            2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH   81 (447)
Q Consensus         2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~   81 (447)
                      +++|+++++.++..|+..|..+...            ..++.|++++++++ +.++..|+.+|+.+...... ...    
T Consensus        25 ~~~L~d~~~~vR~~A~~~L~~~~~~------------~~~~~l~~~l~d~~-~~vr~~a~~aL~~l~~~~~~-~~~----   86 (276)
T d1oyza_          25 FRLLDDHNSLKRISSARVLQLRGGQ------------DAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKKC-EDN----   86 (276)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHHCCH------------HHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTTT-HHH----
T ss_pred             HHHhcCCCHHHHHHHHHHHHhhCCH------------hHHHHHHHHHcCCC-HHHHHHHHHHHHHhcccccc-ccc----
Confidence            5678999999999999999876422            26899999999999 99999999999998753222 111    


Q ss_pred             CChHHHHH-hhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCC
Q 013228           82 GAVPIFVK-LLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPI  160 (447)
Q Consensus        82 ~~i~~L~~-ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~  160 (447)
                       .++.+.. ++.++++.++..++.+|++++...+.....     .++.+...+ .+.+..++..++.++..+..      
T Consensus        87 -~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~-----~~~~l~~~~-~d~~~~vr~~a~~~l~~~~~------  153 (276)
T d1oyza_          87 -VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPK-----IVEQSQITA-FDKSTNVRRATAFAISVIND------  153 (276)
T ss_dssp             -HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHHT-TCSCHHHHHHHHHHHHTC--------
T ss_pred             -hHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhHH-----HHHHHHHHh-cCcchHHHHHHHHHHhhcch------
Confidence             1233443 567789999999999999998655433222     245566666 67778888888888776542      


Q ss_pred             hhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCCh
Q 013228          161 FDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDD  240 (447)
Q Consensus       161 ~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~  240 (447)
                          ...++.+..++...+..++..+..++.........         ..+.+...+.+.+..++..+..+++.+..   
T Consensus       154 ----~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~al~~~~~---  217 (276)
T d1oyza_         154 ----KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRIEAIIGLSYRKD---  217 (276)
T ss_dssp             -----CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCHHHHHHHHHHHHHTTC---
T ss_pred             ----HHHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cchhhhhhhhhhhhhhhhhhccccchhhh---
Confidence                33567788888999999998888888877654432         24556777888999999999888876532   


Q ss_pred             hhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc-CchhHHHHHHHHHH
Q 013228          241 FQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQN-AEFDIKNWAARAIS  318 (447)
Q Consensus       241 ~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~-~~~~v~~~a~~aL~  318 (447)
                              ...++.|++.+.++   .+|..++++|+.+.  +         .+.++.|..++.. ++.+++..|+.+|.
T Consensus       218 --------~~~~~~L~~~l~d~---~vr~~a~~aL~~ig--~---------~~~~~~L~~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         218 --------KRVLSVLCDELKKN---TVYDDIIEAAGELG--D---------KTLLPVLDTMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             --------GGGHHHHHHHHTSS---SCCHHHHHHHHHHC--C---------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             --------hhhHHHHHHHhCCh---HHHHHHHHHHHHcC--C---------HHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence                    23567788888654   58899999999874  2         2378888888875 47889999988874

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.7e-10  Score=107.01  Aligned_cols=387  Identities=12%  Similarity=0.069  Sum_probs=244.6

Q ss_pred             cccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHcCCChhhH-HHH-
Q 013228            2 VAGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMRED-YPQLQFEAAWALKNIVSGTSEDT-KVV-   78 (447)
Q Consensus         2 v~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~-~~~v~~~a~~~L~~l~~~~~~~~-~~~-   78 (447)
                      ++.+.|+|.+.+.+|-..|..+...+ .        .+.+..|...+.+++ ...+|..|+-.|.+......... ... 
T Consensus         6 l~~~~s~d~~~r~~A~~~L~~~~~~~-~--------~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~   76 (458)
T d1ibrb_           6 LEKTVSPDRLELEAAQKFLERAAVEN-L--------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQ   76 (458)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHHHH-H--------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred             HHHHhCcCHHHHHHHHHHHHHHHhcC-c--------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHh
Confidence            35567899999999999999988652 1        125677778776543 36788888888888765332211 111 


Q ss_pred             ---------HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcc-ccchhHHHHHHHH
Q 013228           79 ---------IDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNK-HAKLSMLRIATWT  148 (447)
Q Consensus        79 ---------~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~-~~~~~~~~~a~~~  148 (447)
                               ....+.+.++..+.++++. ++.++.+++.++......   -.-.+.++.+++.+.. ..+...+..++.+
T Consensus        77 ~~~~~l~~~~~~~i~~~ll~~~~~~~~~-~~~~~~~~~~i~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~  152 (458)
T d1ibrb_          77 QRWLAIDANARREVKNYVLQTLGTETYR-PSSASQCVAGIACAEIPV---NQWPELIPQLVANVTNPNSTEHMKESTLEA  152 (458)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHHTTCCCSS-SCSHHHHHHHHHHHHGGG---TCCTTHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred             hhhccCCHHHHHHHHHHHHhccCCCcHH-HHHHHHHHHHHHHHhCCc---ccCcchhHHHHHHHHhhcchHHHHHHHHHH
Confidence                     1123445566666665443 334455555554211000   0012357777777743 2345677788888


Q ss_pred             HHHhcCCC-CCCChhhHhhhHHHHHHhhccC--ChhHHHHHHHHHHHhccCCcHHHH-HHHHhCcHHHHHHhcCCCCchh
Q 013228          149 LSNFCAGK-PKPIFDQVRPALPALAQLVHSN--DKEVMTDACRALFYLSEGTNDEIQ-AVIEAGVCPRLVELLGHPSPSV  224 (447)
Q Consensus       149 L~~l~~~~-~~~~~~~~~~~l~~l~~ll~~~--~~~v~~~al~~l~~l~~~~~~~~~-~~~~~~~~~~L~~lL~~~~~~v  224 (447)
                      +..++... +.........+++.+...+.++  +..++..++.++.++......... ........+.+...+.++++++
T Consensus       153 l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  232 (458)
T d1ibrb_         153 IGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRV  232 (458)
T ss_dssp             HHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHH
T ss_pred             HHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHH
Confidence            88887654 2333334567888888888754  578999999999998865443211 1223346677888889999999


Q ss_pred             HhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHH---------------
Q 013228          225 LTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAV---------------  289 (447)
Q Consensus       225 ~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l---------------  289 (447)
                      +..++.++..++...+......+.......+...+.+. +..++..++..+..++..........               
T Consensus       233 ~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (458)
T d1ibrb_         233 RVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSK  311 (458)
T ss_dssp             HHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCC
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHH
Confidence            99999999999865554322222223334455556666 88899999988888764321111110               


Q ss_pred             -----HHcCChHHHHHHHhc-------CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHH
Q 013228          290 -----IDAGLIGPLVNLLQN-------AEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFL  357 (447)
Q Consensus       290 -----~~~~~~~~L~~~l~~-------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~  357 (447)
                           ....+++.+...+..       .+..++..+..++..++.....+....     +++.+.+.+.++++..+..++
T Consensus       312 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-----l~~~i~~~l~s~~~~~r~aal  386 (458)
T d1ibrb_         312 FYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPH-----VLPFIKEHIKNPDWRYRDAAV  386 (458)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHH-----HHHHHHHHTTCSSHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhH-----HHHHHHHHhcCCCHHHHHHHH
Confidence                 001123444444331       234688888888888876433333333     467788889999999999999


Q ss_pred             HHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 013228          358 KGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWC  420 (447)
Q Consensus       358 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  420 (447)
                      .+|..++.......-           ...+  ...++.+....+++++.|+..|.+.+.++.+
T Consensus       387 ~~l~~i~~~~~~~~~-----------~~~l--~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~  436 (458)
T d1ibrb_         387 MAFGCILEGPEPSQL-----------KPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICE  436 (458)
T ss_dssp             HHHHHTSSSSCTTTT-----------CTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHhHH-----------HHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            999988754322110           0011  3356778888999999999999999998764

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.1e-10  Score=118.14  Aligned_cols=350  Identities=15%  Similarity=0.149  Sum_probs=210.4

Q ss_pred             ccccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCC
Q 013228            3 AGVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHG   82 (447)
Q Consensus         3 ~~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~   82 (447)
                      +.+.++++..|..|+.+|..++.+. .......+ ..+++.++..+++++ +.+|..++|+|+.++.........-.-..
T Consensus       402 ~~l~s~~~~~reaa~~alg~i~eg~-~~~~~~~l-~~li~~l~~~l~d~~-~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~  478 (888)
T d1qbkb_         402 ELLFHHEWVVKESGILVLGAIAEGC-MQGMIPYL-PELIPHLIQCLSDKK-ALVRSITCWTLSRYAHWVVSQPPDTYLKP  478 (888)
T ss_dssp             HTTTSSSHHHHHHHHHHHHHHTTTS-HHHHTTTH-HHHHHHHHHHTTSSC-HHHHHHHHHHHHHTHHHHHSSCHHHHTTT
T ss_pred             HhhccchhHHHHHHHHHhhhhhhhH-HHHhcccc-hhhhHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence            4578889999999999999887653 11111111 236788889999888 99999999999988752111111112235


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh-----hHHH------------------H-------HHh--------cC
Q 013228           83 AVPIFVKLLASPSDDIREQAVCALGNVAADSA-----RCRD------------------L-------VLS--------EE  124 (447)
Q Consensus        83 ~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~-----~~~~------------------~-------~~~--------~~  124 (447)
                      +++.++..+.++++.++..|+++|.+++....     ....                  .       +.+        ..
T Consensus       479 ~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~  558 (888)
T d1qbkb_         479 LMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPE  558 (888)
T ss_dssp             HHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHH
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchH
Confidence            78888888888999999999999998873110     0000                  0       000        00


Q ss_pred             CHHH----HHHHhcc--ccc---------------------------------------------------------hhH
Q 013228          125 ALIP----LLTQLNK--HAK---------------------------------------------------------LSM  141 (447)
Q Consensus       125 ~l~~----l~~~l~~--~~~---------------------------------------------------------~~~  141 (447)
                      .+..    +......  ..+                                                         .++
T Consensus       559 ~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  638 (888)
T d1qbkb_         559 YIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDF  638 (888)
T ss_dssp             HHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHH
T ss_pred             HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHH
Confidence            0011    1111100  000                                                         001


Q ss_pred             HHHHHHHHHHhcCCCCCCChhhH--hhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC
Q 013228          142 LRIATWTLSNFCAGKPKPIFDQV--RPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH  219 (447)
Q Consensus       142 ~~~a~~~L~~l~~~~~~~~~~~~--~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~  219 (447)
                      ...++.++..+............  ..+++.+...+++.++.++..+..+++.++...........+ .+++.+...+.+
T Consensus       639 ~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~-~~~~~l~~~L~~  717 (888)
T d1qbkb_         639 MIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA-DFMPILGTNLNP  717 (888)
T ss_dssp             HHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHTCCG
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHhCc
Confidence            11111111111110000000001  224556667777888999999999998888554433222222 367778888888


Q ss_pred             CCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHH
Q 013228          220 PSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNH-KKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPL  298 (447)
Q Consensus       220 ~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~-~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L  298 (447)
                      +...++..++++++.++..........+. .+++.|++++.++. ...++..++.+++.++...++.....+.. +++.+
T Consensus       718 ~~~~v~~~a~~~ig~ia~~~~~~~~py~~-~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~~-~~~~~  795 (888)
T d1qbkb_         718 EFISVCNNATWAIGEISIQMGIEMQPYIP-MVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQ-FIRPW  795 (888)
T ss_dssp             GGHHHHHHHHHHHHHHHHHTGGGGGGGSH-HHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGGG-THHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhHHH-HHHHH
Confidence            88899999999999998654433222222 46778889997652 35688999999999988777755443433 78888


Q ss_pred             HHHHhc-CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhcc---CCCHHHHHHHHHHHHHHH
Q 013228          299 VNLLQN-AEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLL---CADPEIVTVFLKGLEKIL  364 (447)
Q Consensus       299 ~~~l~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~---~~~~~~~~~a~~~l~~l~  364 (447)
                      +..+.. .|.+-+..|...++.+.... +....     ..+..++....   ...+++.....+.|..+-
T Consensus       796 ~~~l~~~~d~~ek~~~~~g~~~~i~~~-p~~~~-----~~l~~~~~~i~~~~~~~~~~~~~~~~~l~~~~  859 (888)
T d1qbkb_         796 CTSLRNIRDNEEKDSAFRGICTMISVN-PSGVI-----QDFIFFCDAVASWINPKDDLRDMFCKILHGFK  859 (888)
T ss_dssp             HHHHTTSCCSHHHHHHHHHHHHHHHHC-GGGTG-----GGHHHHHHHHTTCSSCCHHHHHHHHHHHHHHH
T ss_pred             HHHhccCCCcHHHHHHHHHHHHHHHHC-cHHHH-----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            888875 46667888999999988653 22111     12233333332   245677777666666554

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=8.7e-11  Score=109.02  Aligned_cols=351  Identities=12%  Similarity=0.063  Sum_probs=215.6

Q ss_pred             CCHHHHHHHHHHHHHHHccCCCCchhh----------hhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 013228            8 DDNNMQLEATTHIRKLLSNARSAPTEE----------VIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKV   77 (447)
Q Consensus         8 ~~~~~~~~a~~~l~~l~~~~~~~~~~~----------~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~   77 (447)
                      .+..+|..|+..|.+............          -....+.+.+++.+.+++ +. +..++.++..++...  ... 
T Consensus        48 ~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~~~~~~-~~-~~~~~~~~~~i~~~~--~~~-  122 (458)
T d1ibrb_          48 NSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YR-PSSASQCVAGIACAE--IPV-  122 (458)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SS-SCSHHHHHHHHHHHH--GGG-
T ss_pred             CCHHHHHHHHHHHHHHhhccCchhhhHHhhhhccCCHHHHHHHHHHHHhccCCCc-HH-HHHHHHHHHHHHHHh--CCc-
Confidence            346788889888888876531111100          112335556777776665 33 334455555554310  000 


Q ss_pred             HHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcc-ccchhHHHHHHHHHHHhcC
Q 013228           78 VIDHGAVPIFVKLLAS--PSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNK-HAKLSMLRIATWTLSNFCA  154 (447)
Q Consensus        78 ~~~~~~i~~L~~ll~~--~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~-~~~~~~~~~a~~~L~~l~~  154 (447)
                      -.-.+.++.++..+.+  .+...+..++.++..++.........-.....++.++..+.. +.+..++..++.++..+..
T Consensus       123 ~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~  202 (458)
T d1ibrb_         123 NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE  202 (458)
T ss_dssp             TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTT
T ss_pred             ccCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHH
Confidence            0012567888887765  467888899999988874322111000111235666666643 3456789999999998886


Q ss_pred             CCC--CCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHH
Q 013228          155 GKP--KPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTV  232 (447)
Q Consensus       155 ~~~--~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l  232 (447)
                      ...  ...........+.+..++.+++++++..++.++..++..........+.......+...+.+.++.++..++..+
T Consensus       203 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l  282 (458)
T d1ibrb_         203 FTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFW  282 (458)
T ss_dssp             TTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred             hhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            541  122223345677788888999999999999999998865443322222223344555666778888999999888


Q ss_pred             HHhhcCChhhHHHH--------------------HhcCChHHHHHhhcc------CCchhHHHHHHHHHHHHhcCCHHHH
Q 013228          233 VNIAAGDDFQTQCI--------------------INCGALPYLLGLLIH------NHKKSIKTDACWTISNITAGNSEHI  286 (447)
Q Consensus       233 ~~l~~~~~~~~~~~--------------------~~~~~l~~l~~~l~~------~~~~~v~~~a~~~l~nl~~~~~~~~  286 (447)
                      ..++..........                    ......+.+...+..      ..+..++..+..++..++...++. 
T Consensus       283 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~-  361 (458)
T d1ibrb_         283 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD-  361 (458)
T ss_dssp             HHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT-
T ss_pred             HHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHh-
Confidence            88764221111000                    011223444444432      114468888888888887632221 


Q ss_pred             HHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 013228          287 QAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKV  366 (447)
Q Consensus       287 ~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~  366 (447)
                        +.. .+++.+...++++++.+|..|+.+|+.++....++....+ -..+++.+...+.++++.+|..|+++|.++++.
T Consensus       362 --~~~-~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~-l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~  437 (458)
T d1ibrb_         362 --IVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  437 (458)
T ss_dssp             --HHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             --hhh-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence              111 2566677778888999999999999999875432222211 134688999999999999999999999999876


Q ss_pred             hh
Q 013228          367 GE  368 (447)
Q Consensus       367 ~~  368 (447)
                      ..
T Consensus       438 ~~  439 (458)
T d1ibrb_         438 LP  439 (458)
T ss_dssp             GG
T ss_pred             hh
Confidence            54

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1.8e-10  Score=120.32  Aligned_cols=352  Identities=13%  Similarity=0.113  Sum_probs=221.1

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 013228           41 VPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLV  120 (447)
Q Consensus        41 v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~  120 (447)
                      +..|++-+++++ +++|..|+.-|.+......-..+.-....+++.++++|.++++++|..|+.+|+.++...++.  .+
T Consensus         5 ~~~ll~k~~~~D-~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~--~~   81 (1207)
T d1u6gc_           5 ISNLLEKMTSSD-KDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY--QV   81 (1207)
T ss_dssp             HHHHHHHTTCSS-HHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH--HH
T ss_pred             HHHHHHhcCCCC-HhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHh--hH
Confidence            456677788999 999999998888765422111000011236788999999999999999999999998665432  11


Q ss_pred             HhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCC------CChhhHhhhHHHHHHhhc-cCChhHHHHHHHHHHHh
Q 013228          121 LSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPK------PIFDQVRPALPALAQLVH-SNDKEVMTDACRALFYL  193 (447)
Q Consensus       121 ~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~------~~~~~~~~~l~~l~~ll~-~~~~~v~~~al~~l~~l  193 (447)
                        ...++.|+..+ .+.+...+..+..+|..+...-+.      ........+++.+...+. ..+..++..++.++..+
T Consensus        82 --~~l~~~L~~~l-~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l  158 (1207)
T d1u6gc_          82 --ETIVDTLCTNM-LSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM  158 (1207)
T ss_dssp             --HHHHHHHHHHT-TCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHh-cCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Confidence              12466677766 455667777777777666543211      111122445555555544 45788899999988887


Q ss_pred             ccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHH
Q 013228          194 SEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACW  273 (447)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~  273 (447)
                      ....+...... ...+++.++..+.+++..+|..|+.+++.++...+..   .. ...++.++..+..+.....+..++.
T Consensus       159 ~~~~g~~l~~~-~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~---~~-~~~~~~ll~~l~~~~~~~~~~~~~~  233 (1207)
T d1u6gc_         159 LSRQGGLLVNF-HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VF-VDLIEHLLSELSKNDSMSTTRTYIQ  233 (1207)
T ss_dssp             HHHTCSSCTTT-HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred             HHHhhHhhHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH---HH-HHHHHHHHHHHccCCCHHHHHHHHH
Confidence            64332111111 1246778888899999999999999999998755421   11 2356666666654436667777888


Q ss_pred             HHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHh----------
Q 013228          274 TISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCD----------  343 (447)
Q Consensus       274 ~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~----------  343 (447)
                      +++.++...+......+ ..+++.+...+..+++++|..+..++..+......+....+.+  .+..+..          
T Consensus       234 ~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~--ii~~~l~~l~~dp~~~~  310 (1207)
T d1u6gc_         234 CIAAISRQAGHRIGEYL-EKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVST--IINICLKYLTYDPNYNY  310 (1207)
T ss_dssp             HHHHHHHHSSGGGTTSC-TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHH--HHHHHTTCCCCC-----
T ss_pred             HHHHHHHHcchhhHHHH-HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHHH--HHHHHHHHHhcCcchhh
Confidence            88888764322111111 3478889999999999999999999988876432111111100  1111111          


Q ss_pred             ---------------------------hccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHH
Q 013228          344 ---------------------------LLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKI  396 (447)
Q Consensus       344 ---------------------------ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l  396 (447)
                                                 ...+..+.++..++.+|..++......            ... +. ...++.+
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~------------l~~-~~-~~~~~~L  376 (1207)
T d1u6gc_         311 DDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEM------------LPE-FY-KTVSPAL  376 (1207)
T ss_dssp             -------------------------------CTTHHHHHHHHHHHHHHTTCCTT------------HHH-HH-TTTHHHH
T ss_pred             hhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHH------------HHH-HH-HHHHHHH
Confidence                                       112334578888999999888654322            112 21 3456777


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHhcC
Q 013228          397 ENLRSHDNDEIHEKSVKILETYWC  420 (447)
Q Consensus       397 ~~l~~~~~~~v~~~a~~~l~~~~~  420 (447)
                      .....+.++.++..+...+..+..
T Consensus       377 ~~~l~d~~~~vr~~~~~~l~~l~~  400 (1207)
T d1u6gc_         377 ISRFKEREENVKADVFHAYLSLLK  400 (1207)
T ss_dssp             HSTTSCSSSHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCchHHHHHHHHHHHHHHH
Confidence            777888889999888887776653

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.16  E-value=1.2e-08  Score=102.06  Aligned_cols=382  Identities=13%  Similarity=0.074  Sum_probs=240.2

Q ss_pred             ccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHcCCChhhHHHH-----
Q 013228            5 VWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMRED-YPQLQFEAAWALKNIVSGTSEDTKVV-----   78 (447)
Q Consensus         5 l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~-----   78 (447)
                      +.|+|+.+|..|-..|.++...+ .        .+.+..|.+.+.+.+ +..+|..|+-.|.+............     
T Consensus        14 ~~s~d~~~r~~Ae~~L~~~~~~~-~--------~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~~~~~   84 (861)
T d2bpta1          14 ILSPDQNIRLTSETQLKKLSNDN-F--------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRW   84 (861)
T ss_dssp             HHCSSHHHHHHHHHHHHHHHHHC-H--------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHH
T ss_pred             hcCCCHHHHHHHHHHHHHHHhcC-c--------hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhhHHhhh
Confidence            56889999999999998887542 1        135677888886543 36888889888888765332211100     


Q ss_pred             -------HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhc---CCHHHHHHHhccccchhHHHHHHHH
Q 013228           79 -------IDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSE---EALIPLLTQLNKHAKLSMLRIATWT  148 (447)
Q Consensus        79 -------~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~---~~l~~l~~~l~~~~~~~~~~~a~~~  148 (447)
                             ....+-..++..+.++++.+|..++.+++.++...-      ...   ..++.+++.+....+..++..++.+
T Consensus        85 ~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~------p~~~wpeli~~L~~~~~s~~~~~~~~~al~~  158 (861)
T d2bpta1          85 ITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIEL------PHGAWPELMKIMVDNTGAEQPENVKRASLLA  158 (861)
T ss_dssp             HHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG------GGTCCHHHHHHHHHHTSTTSCHHHHHHHHHH
T ss_pred             HhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhC------CcCchHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence                   011223556777788899999999999999873211      111   1356677777555556778889999


Q ss_pred             HHHhcCCCCCCChh---hHhhhHHHHHHhhc--cCChhHHHHHHHHHHHhccCCcHHHH-HHHHhCcHHHHHHhcCCCCc
Q 013228          149 LSNFCAGKPKPIFD---QVRPALPALAQLVH--SNDKEVMTDACRALFYLSEGTNDEIQ-AVIEAGVCPRLVELLGHPSP  222 (447)
Q Consensus       149 L~~l~~~~~~~~~~---~~~~~l~~l~~ll~--~~~~~v~~~al~~l~~l~~~~~~~~~-~~~~~~~~~~L~~lL~~~~~  222 (447)
                      +..++.........   ....+++.++..+.  ..+..++..++.++.++......... ......+++.+...+.++++
T Consensus       159 l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  238 (861)
T d2bpta1         159 LGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDI  238 (861)
T ss_dssp             HHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCH
Confidence            99998665222222   22445555555554  34578999999999988865433211 11223467778888899999


Q ss_pred             hhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-----------
Q 013228          223 SVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVID-----------  291 (447)
Q Consensus       223 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-----------  291 (447)
                      .++..++.++..++...+......+..-+...+.....+. ++.++..+...+..++............           
T Consensus       239 ~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~  317 (861)
T d2bpta1         239 EVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP-NDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNF  317 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            9999999999999865544333233222223344455566 8899999988888776532221111111           


Q ss_pred             -----cCChHHHHHHHhc-------CchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHH
Q 013228          292 -----AGLIGPLVNLLQN-------AEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKG  359 (447)
Q Consensus       292 -----~~~~~~L~~~l~~-------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~  359 (447)
                           ..+++.+...+..       ++...+..+..++..++..........     ..+.+...+.+.++..+..++.+
T Consensus       318 ~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~a~~~  392 (861)
T d2bpta1         318 ALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEP-----VLEFVEQNITADNWRNREAAVMA  392 (861)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHH-----HHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhh-----hcchhhhhhhhHHHHHHHHHHHH
Confidence                 1134445555442       233566777777766654321111122     24455667778889999999998


Q ss_pred             HHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 013228          360 LEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYWC  420 (447)
Q Consensus       360 l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  420 (447)
                      +..+........           ....+  ...++.+.+...++++.++..+.+.+.++.+
T Consensus       393 l~~i~~~~~~~~-----------~~~~l--~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~  440 (861)
T d2bpta1         393 FGSIMDGPDKVQ-----------RTYYV--HQALPSILNLMNDQSLQVKETTAWCIGRIAD  440 (861)
T ss_dssp             HHHTSSSSCHHH-----------HHHHH--HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcchhh-----------HHHHH--HHHHHHHHHHhcCcchhhhhHHHHHHHHHHH
Confidence            888876433221           11112  2346778888899999999999999887654

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.00  E-value=2.4e-08  Score=99.80  Aligned_cols=345  Identities=15%  Similarity=0.179  Sum_probs=203.7

Q ss_pred             HHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHH
Q 013228           10 NNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVK   89 (447)
Q Consensus        10 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~   89 (447)
                      ...+..+..++..+....+.....     -..+.+...+.+++ ...+..++.+++.++.........-.-..+++.++.
T Consensus       345 ~~~~~~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~  418 (861)
T d2bpta1         345 WNVSMSAGACLQLFAQNCGNHILE-----PVLEFVEQNITADN-WRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILN  418 (861)
T ss_dssp             CHHHHHHHHHHHHHHHHHGGGGHH-----HHHHHHHHHTTCSS-HHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcchhhhh-----hhcchhhhhhhhHH-HHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHH
Confidence            455556666665555432111100     12334445556677 799999999999998754333222222346888999


Q ss_pred             hhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcc--ccchhHHHHHHHHHHHhcCCC----CCCChhh
Q 013228           90 LLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNK--HAKLSMLRIATWTLSNFCAGK----PKPIFDQ  163 (447)
Q Consensus        90 ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~--~~~~~~~~~a~~~L~~l~~~~----~~~~~~~  163 (447)
                      .+.++++.+|..++++++.++...+.   .+.....++.++..+..  ..++.+...+++++..++...    .......
T Consensus       419 ~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  495 (861)
T d2bpta1         419 LMNDQSLQVKETTAWCIGRIADSVAE---SIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNF  495 (861)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHHHHHGG---GSCTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGG
T ss_pred             HhcCcchhhhhHHHHHHHHHHHHhch---hhhhHHhhhhhhHHHHhccccChHHHHHHHHHHHHHHHHhhhcccchhhHH
Confidence            99999999999999999998743211   11122334444443321  335667777888877776432    2222223


Q ss_pred             HhhhHHHHHHhhcc--CChhHHHHHHHHHHHhccCCcHHHHHHHH---hCcHHHHHHhcCCCCc-----------hhHhH
Q 013228          164 VRPALPALAQLVHS--NDKEVMTDACRALFYLSEGTNDEIQAVIE---AGVCPRLVELLGHPSP-----------SVLTR  227 (447)
Q Consensus       164 ~~~~l~~l~~ll~~--~~~~v~~~al~~l~~l~~~~~~~~~~~~~---~~~~~~L~~lL~~~~~-----------~v~~~  227 (447)
                      ....+..++.....  .+..++..+..++..+.............   ....+.+...+.....           .++..
T Consensus       496 ~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  575 (861)
T d2bpta1         496 YPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSN  575 (861)
T ss_dssp             HHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence            34555556655543  35677888888888777543332221111   1223333333332211           23334


Q ss_pred             HHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCch
Q 013228          228 ALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQNAEF  307 (447)
Q Consensus       228 a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~~~~~  307 (447)
                      ++.++..+....+....... ..+++.+...+....+..++..++.+++.++...++.....+.. ++|.+...+.+.++
T Consensus       576 ~~~~l~~~~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~-i~p~l~~~l~~~~~  653 (861)
T d2bpta1         576 ILTVLAAVIRKSPSSVEPVA-DMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLET-FSPYLLKALNQVDS  653 (861)
T ss_dssp             HHHHHHHHHHHCGGGTGGGH-HHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHH-HHHHHHHHHHCTTS
T ss_pred             HHHHHHHHHhcchhhHHHHH-HHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHHH-HhhHHHHHhCCCCH
Confidence            44455555432222211111 13456677777666477889999999998887433333344433 78899999999999


Q ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCC--CHHHHHHHHHHHHHHHHhh
Q 013228          308 DIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCA--DPEIVTVFLKGLEKILKVG  367 (447)
Q Consensus       308 ~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~~~~~a~~~l~~l~~~~  367 (447)
                      .++..|+.+++.++.........++-  .+++.|.+.+.+.  +..++..++.++..++...
T Consensus       654 ~v~~~a~~~l~~i~~~~~~~~~~~~~--~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~  713 (861)
T d2bpta1         654 PVSITAVGFIADISNSLEEDFRRYSD--AMMNVLAQMISNPNARRELKPAVLSVFGDIASNI  713 (861)
T ss_dssp             HHHHHHHHHHHHHHHHTGGGGHHHHH--HHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHhHhhHH--HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999987654333333322  2577788888654  4578888999999888654

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.2e-07  Score=95.02  Aligned_cols=387  Identities=12%  Similarity=0.060  Sum_probs=233.4

Q ss_pred             CHHHHHHHHHHHHHHHccCCCCch----------hhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-HH
Q 013228            9 DNNMQLEATTHIRKLLSNARSAPT----------EEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDT-KV   77 (447)
Q Consensus         9 ~~~~~~~a~~~l~~l~~~~~~~~~----------~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~   77 (447)
                      +..+|..|+-.|.+..........          ..-.+..+...+++.+.+++  .++..++.+++.++..  +.. ..
T Consensus        50 ~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~~~i~~~~k~~ik~~ll~~l~~~~--~~~~~~a~~i~~i~~~--~~p~~~  125 (876)
T d1qgra_          50 SQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTET--YRPSSASQCVAGIACA--EIPVNQ  125 (876)
T ss_dssp             CHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCC--SSSCHHHHHHHHHHHH--HGGGTC
T ss_pred             CHHHHHHHHHHHHHHhhccccchhhhhhcccccCCHHHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHHHH--HCCccc
Confidence            466788888888877754211000          00112234567777887766  3455677888887652  110 00


Q ss_pred             HHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcc-ccchhHHHHHHHHHHHhcC
Q 013228           78 VIDHGAVPIFVKLLASP--SDDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNK-HAKLSMLRIATWTLSNFCA  154 (447)
Q Consensus        78 ~~~~~~i~~L~~ll~~~--~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~-~~~~~~~~~a~~~L~~l~~  154 (447)
                        =.+.++.|++.+.++  +..++..++.+|..++..-....-.-.....++.+++.+.. +.+.+++..++.++.+...
T Consensus       126 --Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~  203 (876)
T d1qgra_         126 --WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE  203 (876)
T ss_dssp             --CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGG
T ss_pred             --cHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHH
Confidence              025688888888654  47789999999999985322111000112346667777743 3356788888888887765


Q ss_pred             CCC--CCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHH
Q 013228          155 GKP--KPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTV  232 (447)
Q Consensus       155 ~~~--~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l  232 (447)
                      ...  .........+++.+...+.+++++++..++.++..+...............+...+.....+..+.++..++..+
T Consensus       204 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  283 (876)
T d1qgra_         204 FTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFW  283 (876)
T ss_dssp             GCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             HhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            431  111122244667777888899999999999999998865554433344445666677777888888888888887


Q ss_pred             HHhhcCChhhHHH--------------------HHhcCChHHHHHhhccC------CchhHHHHHHHHHHHHhcCCHHHH
Q 013228          233 VNIAAGDDFQTQC--------------------IINCGALPYLLGLLIHN------HKKSIKTDACWTISNITAGNSEHI  286 (447)
Q Consensus       233 ~~l~~~~~~~~~~--------------------~~~~~~l~~l~~~l~~~------~~~~v~~~a~~~l~nl~~~~~~~~  286 (447)
                      ..++.........                    .....+++.+...+...      .+..++..+..++..++...++  
T Consensus       284 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~--  361 (876)
T d1qgra_         284 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--  361 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--
T ss_pred             HHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhh--
Confidence            7776422211100                    00112233444443321      1345777777777776542111  


Q ss_pred             HHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 013228          287 QAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKV  366 (447)
Q Consensus       287 ~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~  366 (447)
                       .++. .+++.+...+.++++..+..++.+++.+............. ...++.+...+.++++.++..+++++..+++.
T Consensus       362 -~~~~-~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~  438 (876)
T d1qgra_         362 -DIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  438 (876)
T ss_dssp             -GGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             -hhhh-hhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHH-HHHHHHHHHhhcCCccHHHHHHHHHHHHHHHH
Confidence             1111 13445555666788899999999999998765555444322 23688889999999999999999999999886


Q ss_pred             hhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 013228          367 GEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILETYW  419 (447)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  419 (447)
                      .......       ..+..     ..++.+.+.. ++++.++..+.+.+..+.
T Consensus       439 ~~~~~~~-------~~~~~-----~~~~~l~~~l-~~~~~v~~~~~~~l~~l~  478 (876)
T d1qgra_         439 LPEAAIN-------DVYLA-----PLLQCLIEGL-SAEPRVASNVCWAFSSLA  478 (876)
T ss_dssp             CGGGTSS-------TTTHH-----HHHHHHHHHT-TSCHHHHHHHHHHHHHHH
T ss_pred             cchhhhh-------HHHhh-----hHHHHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence            5432110       00111     1123333333 346788888887777654

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=1.6e-08  Score=101.39  Aligned_cols=351  Identities=11%  Similarity=0.063  Sum_probs=210.3

Q ss_pred             cccCCCHHHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHcCCChhhHHHHHhCC
Q 013228            4 GVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMRED-YPQLQFEAAWALKNIVSGTSEDTKVVIDHG   82 (447)
Q Consensus         4 ~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~   82 (447)
                      .+.+++. .+..++.++..++..+-+  ....  .++++.|.+.+.+++ .+.++..++.+|..++.........-....
T Consensus        98 ~l~~~~~-~~~~~a~~i~~i~~~~~p--~~~W--peli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~  172 (876)
T d1qgra_          98 TLGTETY-RPSSASQCVAGIACAEIP--VNQW--PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNE  172 (876)
T ss_dssp             HTTTCCS-SSCHHHHHHHHHHHHHGG--GTCC--TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHH
T ss_pred             HhcCCcH-HHHHHHHHHHHHHHHHCC--cccc--HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence            3444443 344556666666654200  0000  257899999887654 367888899999998752211111011124


Q ss_pred             ChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCChhHHHHHH-hcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCC
Q 013228           83 AVPIFVKLLAS--PSDDIREQAVCALGNVAADSARCRDLVL-SEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKP  159 (447)
Q Consensus        83 ~i~~L~~ll~~--~~~~i~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~  159 (447)
                      +++.++..+.+  ++..++..++.++.+............. ....++.+...+ .+++++++..++.++..++...+..
T Consensus       173 il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~v~~~~~~~l~~l~~~~~~~  251 (876)
T d1qgra_         173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT-QCPDTRVRVAALQNLVKIMSLYYQY  251 (876)
T ss_dssp             HHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHSGGG
T ss_pred             HHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhHHH
Confidence            56777777765  4578999999999887754332111000 111233344444 6778899999999999998765443


Q ss_pred             ChhhH-hhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHH--------------------HHHHhCcHHHHHHhcC
Q 013228          160 IFDQV-RPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQ--------------------AVIEAGVCPRLVELLG  218 (447)
Q Consensus       160 ~~~~~-~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~--------------------~~~~~~~~~~L~~lL~  218 (447)
                      ..... ..+.+.+...+.+.++.+...++..+..++........                    ......+++.+...+.
T Consensus       252 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  331 (876)
T d1qgra_         252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT  331 (876)
T ss_dssp             CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            33333 34555666777888888888888777766632111100                    0111233445555543


Q ss_pred             C-------CCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcC-CHHHHHHHH
Q 013228          219 H-------PSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAG-NSEHIQAVI  290 (447)
Q Consensus       219 ~-------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~  290 (447)
                      .       .+..++..+..++..++.......   +. .+++.+...+.++ +...|..++..++.+..+ .........
T Consensus       332 ~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~---~~-~~~~~i~~~l~~~-~~~~r~~~~~~l~~~~~~~~~~~~~~~~  406 (876)
T d1qgra_         332 KQDENDDDDDWNPCKAAGVCLMLLATCCEDDI---VP-HVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPLV  406 (876)
T ss_dssp             CCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGG---HH-HHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCHHHHHHHH
T ss_pred             hcccccccccchHHHHHHHHHHHHHHHhhhhh---hh-hhHHHHHHhhccc-hHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence            2       234577778888877764333211   11 2345666677777 899999999999998764 444444444


Q ss_pred             HcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 013228          291 DAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVG  367 (447)
Q Consensus       291 ~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~  367 (447)
                      .. +++.+...+.++++.++..++++++.++............-...++.+...+. .++.++..+++++.++....
T Consensus       407 ~~-~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~v~~~~~~~l~~l~~~~  481 (876)
T d1qgra_         407 IQ-AMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS-AEPRVASNVCWAFSSLAEAA  481 (876)
T ss_dssp             HH-HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHH
Confidence            33 78889999999999999999999999875321100000000012445555554 46788889999998887654

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.79  E-value=1.8e-06  Score=76.63  Aligned_cols=350  Identities=11%  Similarity=0.099  Sum_probs=199.8

Q ss_pred             CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH---HHHhCC--ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 013228           39 GVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTK---VVIDHG--AVPIFVKLLASPSDDIREQAVCALGNVAADS  113 (447)
Q Consensus        39 ~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~---~~~~~~--~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~  113 (447)
                      .++..++++|.....+++....+-.+..+...++....   .+.+..  .-.++...+..++.-+...+...+..++...
T Consensus        74 ~~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~  153 (477)
T d1ho8a_          74 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG  153 (477)
T ss_dssp             TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHHHHHhcc
Confidence            46889999998765578888888888887765442211   222221  2244455565566667777778888887654


Q ss_pred             hhHHHHHHhcCCHHHHHHHhccccchhHHHHHHHHHHHhcCCCCCCChh--hHhhhHHHHHHhhcc--------------
Q 013228          114 ARCRDLVLSEEALIPLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFD--QVRPALPALAQLVHS--------------  177 (447)
Q Consensus       114 ~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~l~~l~~ll~~--------------  177 (447)
                      ...........-...++..+....+......++.++..+.+..+.+...  .....++.++..|+.              
T Consensus       154 ~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~  233 (477)
T d1ho8a_         154 LHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATN  233 (477)
T ss_dssp             TCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-----------
T ss_pred             ccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCccHHHHHHHcccchHHHHHHHHHHHhcccccchhhccc
Confidence            3322211110012334444446667777777888888888765333221  123445555555542              


Q ss_pred             ---CChhHHHHHHHHHHHhccCCcHHHHHHHHh--CcHHHHHHhc-CCCCchhHhHHHHHHHHhhcCChh-----hHHHH
Q 013228          178 ---NDKEVMTDACRALFYLSEGTNDEIQAVIEA--GVCPRLVELL-GHPSPSVLTRALQTVVNIAAGDDF-----QTQCI  246 (447)
Q Consensus       178 ---~~~~v~~~al~~l~~l~~~~~~~~~~~~~~--~~~~~L~~lL-~~~~~~v~~~a~~~l~~l~~~~~~-----~~~~~  246 (447)
                         ....++..++.+++-++... .....+.+.  +.++.++.++ .+..+.+.+-++.++.|++.....     ....+
T Consensus       234 ~~~~~~Ql~Y~~ll~lWlLSF~~-~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~  312 (477)
T d1ho8a_         234 SNHLGIQLQYHSLLLIWLLTFNP-VFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLL  312 (477)
T ss_dssp             --CCHHHHHHHHHHHHHHHTTSH-HHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHHHHHHHcCH-HHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Confidence               12477899999999999643 334445444  3477888887 457788999999999999865321     12334


Q ss_pred             HhcCChHHHHHhhccC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChH-HHHHHHhcC----chhHHHHHHHHHHH
Q 013228          247 INCGALPYLLGLLIHN--HKKSIKTDACWTISNITAGNSEHIQAVIDAGLIG-PLVNLLQNA----EFDIKNWAARAISN  319 (447)
Q Consensus       247 ~~~~~l~~l~~~l~~~--~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~-~L~~~l~~~----~~~v~~~a~~aL~~  319 (447)
                      +..++++.+ ..|...  .|+++....-. |.....   +..+.   ..-++ ..-++ .++    +|.-+.+..|- -|
T Consensus       313 v~~~~l~~l-~~L~~r~~~Dedl~edl~~-L~~~L~---~~~k~---lTsfd~Y~~Ev-~Sg~L~WSP~H~se~FW~-EN  382 (477)
T d1ho8a_         313 LLGNALPTV-QSLSERKYSDEELRQDISN-LKEILE---NEYQE---LTSFDEYVAEL-DSKLLCWSPPHVDNGFWS-DN  382 (477)
T ss_dssp             HHHCHHHHH-HHHHSSCCSSHHHHHHHHH-HHHHHH---HHHHT---CCHHHHHHHHH-HHTCCCCCGGGGCHHHHH-HH
T ss_pred             HHcchhHHH-HHHhcCCCCCHHHHHHHHH-HHHHHH---HHHHh---cCcHHHHHHHH-hcCCCCCCCCcCChhHHH-HH
Confidence            455555444 444322  14444433221 111111   00000   00000 01111 111    01111111111 01


Q ss_pred             hcCCCCHHHHHHHHHcCChHHHHhhcc----------CCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHH
Q 013228          320 ATFGGTHEQIKYLVREGCIKPLCDLLL----------CADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEE  389 (447)
Q Consensus       320 l~~~~~~~~~~~l~~~~~l~~L~~ll~----------~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~  389 (447)
                      ...-.+ +..      .++..|+++|+          +.|+.+...|+.=+..+++.-+..             +..+++
T Consensus       383 ~~kf~e-~~~------~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~g-------------r~il~~  442 (477)
T d1ho8a_         383 IDEFKK-DNY------KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPES-------------IDVLDK  442 (477)
T ss_dssp             SGGGSS-GGG------HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTH-------------HHHHHH
T ss_pred             HHhhcc-cch------HHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcch-------------hHHHHH
Confidence            111101 111      23677788875          346778888899999999876654             677889


Q ss_pred             hchHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 013228          390 AEGLEKIENLRSHDNDEIHEKSVKILETYW  419 (447)
Q Consensus       390 ~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  419 (447)
                      .|+-+++.+|++|++++|+..|..++.++.
T Consensus       443 lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm  472 (477)
T d1ho8a_         443 TGGKADIMELLNHSDSRVKYEALKATQAII  472 (477)
T ss_dssp             HSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988764

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.72  E-value=9.1e-07  Score=78.61  Aligned_cols=303  Identities=17%  Similarity=0.145  Sum_probs=184.2

Q ss_pred             cccCCCHHHHHHHHHHHHHHHccCCCCchhhhhc-cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC-
Q 013228            4 GVWSDDNNMQLEATTHIRKLLSNARSAPTEEVIP-FGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDH-   81 (447)
Q Consensus         4 ~l~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-   81 (447)
                      .+.+++.-....+...+..+++.. .......-. ......+-.+..+++ .+.+..++.++..+.. .+++|..+... 
T Consensus       130 ~l~~~d~~~~~~s~~i~~ll~~~~-~~~~~~~e~l~~~~~~l~~l~~~~~-~~~~~i~v~~lq~llr-~~~~R~~fw~~~  206 (477)
T d1ho8a_         130 SLKGDFQTVLISGFNVVSLLVQNG-LHNVKLVEKLLKNNNLINILQNIEQ-MDTCYVCIRLLQELAV-IPEYRDVIWLHE  206 (477)
T ss_dssp             CSCSSHHHHHHHHHHHHHHHTSTT-TCCHHHHHHHHHCHHHHHHHHCTTC-HHHHHHHHHHHHHHHT-SHHHHHHHHTTH
T ss_pred             hccCchhHHHHHHHHHHHHHHhcc-ccccchHHHHHHhhHHHHHhhcccc-cchHHHHHHHHHHHhc-CccHHHHHHHcc
Confidence            466677777778887788877653 322221110 112334444446666 7889999999999998 78888887543 


Q ss_pred             -CChHHHHHhhCC-----------------CCHHHHHHHHHHHHHhhcCChhHHHHHHhc--CCHHHHHHHhccccchhH
Q 013228           82 -GAVPIFVKLLAS-----------------PSDDIREQAVCALGNVAADSARCRDLVLSE--EALIPLLTQLNKHAKLSM  141 (447)
Q Consensus        82 -~~i~~L~~ll~~-----------------~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~--~~l~~l~~~l~~~~~~~~  141 (447)
                       ..++.++..++.                 ....++..++.+++-|+.... ....+.+.  +.++.++.++.....+.+
T Consensus       207 ~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~l~~~~~~~i~~l~~i~~~s~KEKv  285 (477)
T d1ho8a_         207 KKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKV  285 (477)
T ss_dssp             HHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHH
T ss_pred             cchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence             345556555532                 124778899999999997654 44454443  348888888888888999


Q ss_pred             HHHHHHHHHHhcCCCCCCChh-----hH-hhhHHHHHHhhc--cCChhHHHHHHHHHHHhccCCcHHHHHH--HHhCcHH
Q 013228          142 LRIATWTLSNFCAGKPKPIFD-----QV-RPALPALAQLVH--SNDKEVMTDACRALFYLSEGTNDEIQAV--IEAGVCP  211 (447)
Q Consensus       142 ~~~a~~~L~~l~~~~~~~~~~-----~~-~~~l~~l~~ll~--~~~~~v~~~al~~l~~l~~~~~~~~~~~--~~~~~~~  211 (447)
                      .+-++.++.|++.........     .. .++++.+-.+..  -.|+++.... ..|......   ..+.+  .+.=.-+
T Consensus       286 vRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~edl-~~L~~~L~~---~~k~lTsfd~Y~~E  361 (477)
T d1ho8a_         286 SRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDI-SNLKEILEN---EYQELTSFDEYVAE  361 (477)
T ss_dssp             HHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHH-HHHHHHHHH---HHHTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHHHHHhcCCCCCHHHHHHH-HHHHHHHHH---HHHhcCcHHHHHHH
Confidence            999999999999764222111     11 334444333332  2356654432 223222210   00000  0000011


Q ss_pred             HHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhcc---------CCchhHHHHHHHHHHHHhcCC
Q 013228          212 RLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIH---------NHKKSIKTDACWTISNITAGN  282 (447)
Q Consensus       212 ~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~---------~~~~~v~~~a~~~l~nl~~~~  282 (447)
                      ..-..|.- +|.-+....| --|.....+...      .++..|+++|.+         +.++.+..-||.=++.++...
T Consensus       362 v~Sg~L~W-SP~H~se~FW-~EN~~kf~e~~~------~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~  433 (477)
T d1ho8a_         362 LDSKLLCW-SPPHVDNGFW-SDNIDEFKKDNY------KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELL  433 (477)
T ss_dssp             HHHTCCCC-CGGGGCHHHH-HHHSGGGSSGGG------HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HhcCCCCC-CCCcCChhHH-HHHHHhhcccch------HHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHC
Confidence            11122221 1222222222 223333222222      356678888852         227778888999999999988


Q ss_pred             HHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcC
Q 013228          283 SEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATF  322 (447)
Q Consensus       283 ~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~  322 (447)
                      |..+..+-+.|+=..+++++.++|++||.+|+.++..+..
T Consensus       434 P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  473 (477)
T d1ho8a_         434 PESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG  473 (477)
T ss_dssp             TTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            8888777788999999999999999999999999987753

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.48  E-value=2.1e-08  Score=72.72  Aligned_cols=109  Identities=20%  Similarity=0.222  Sum_probs=88.1

Q ss_pred             cCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChH
Q 013228          217 LGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIG  296 (447)
Q Consensus       217 L~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~  296 (447)
                      |.++++.+|..|+++|+.+.   +         ..++.|+..+.++ ++.+|..|+++|+++..  +.         .++
T Consensus         1 L~D~~~~VR~~A~~aL~~~~---~---------~~~~~L~~~l~d~-~~~vR~~a~~~L~~~~~--~~---------~~~   56 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMG---D---------EAFEPLLESLSNE-DWRIRGAAAWIIGNFQD--ER---------AVE   56 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCS---S---------TTHHHHHHGGGCS-CHHHHHHHHHHHGGGCS--HH---------HHH
T ss_pred             CCCcCHHHHHHHHHHHHHhC---H---------HHHHHHHHHHcCC-CHHHHHHHHHHHHhcch--hh---------hHH
Confidence            46788899999988887642   1         3567788999988 99999999999988632  22         467


Q ss_pred             HHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHHH
Q 013228          297 PLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGLE  361 (447)
Q Consensus       297 ~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~  361 (447)
                      .|..+++++++.+|..|+++|+.+..   +.         .++.|..+++++++.++..|+.+|.
T Consensus        57 ~L~~~l~d~~~~VR~~a~~aL~~i~~---~~---------~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          57 PLIKLLEDDSGFVRSGAARSLEQIGG---ER---------VRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHHCCTHHHHHHHHHHHHHCS---HH---------HHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHHhhhccchhHHHHHHHHHHHHhCc---cc---------hHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            88999999999999999999998843   22         4677788999999999999988764

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.44  E-value=4.5e-08  Score=70.94  Aligned_cols=109  Identities=18%  Similarity=0.168  Sum_probs=88.2

Q ss_pred             hcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhHHHHHHhcCCHH
Q 013228           48 LMREDYPQLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARCRDLVLSEEALI  127 (447)
Q Consensus        48 l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~  127 (447)
                      |++++ +.||..|+++|+.+..            ..++.|+..+.++++.+|..++++|+++...           +.++
T Consensus         1 L~D~~-~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~~-----------~~~~   56 (111)
T d1te4a_           1 MADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQDE-----------RAVE   56 (111)
T ss_dssp             CCSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCSH-----------HHHH
T ss_pred             CCCcC-HHHHHHHHHHHHHhCH------------HHHHHHHHHHcCCCHHHHHHHHHHHHhcchh-----------hhHH
Confidence            34556 7888888888776532            3578899999999999999999999987521           2367


Q ss_pred             HHHHHhccccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHH
Q 013228          128 PLLTQLNKHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALF  191 (447)
Q Consensus       128 ~l~~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~  191 (447)
                      .+...+ .++++.++..++++|..+..          ...++.|..+++++++.++..++.+|.
T Consensus        57 ~L~~~l-~d~~~~VR~~a~~aL~~i~~----------~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          57 PLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHHhhh-ccchhHHHHHHHHHHHHhCc----------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            888888 68899999999999998742          467888999999999999999988774

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=0.0048  Score=51.05  Aligned_cols=201  Identities=14%  Similarity=0.063  Sum_probs=146.1

Q ss_pred             HHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChh----hHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHH
Q 013228          202 QAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDF----QTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISN  277 (447)
Q Consensus       202 ~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~n  277 (447)
                      +.+...+.+..|+..|..-+.+.|+.+..+++++.+....    ..+.+...  .+.+..++..-+++++...+..+|..
T Consensus        63 ~e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~--~eil~~L~~gye~~eiAl~~G~mLRE  140 (330)
T d1upka_          63 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ--QNILFMLLKGYESPEIALNCGIMLRE  140 (330)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC--THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred             HHHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcC--HHHHHHHHhhcCCcchhhhhhHHHHH
Confidence            4566778899999999999999999999999999864332    23444432  24444444433355666677777777


Q ss_pred             HhcCCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcC---ChHHHHhhccCCCHHHHH
Q 013228          278 ITAGNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREG---CIKPLCDLLLCADPEIVT  354 (447)
Q Consensus       278 l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~---~l~~L~~ll~~~~~~~~~  354 (447)
                      ++.. +...+.++....+..+.+.++.++.++...|...+..+.... +.....++..+   +...+..++.+++.-++.
T Consensus       141 cik~-e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~h-k~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrR  218 (330)
T d1upka_         141 CIRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRH-KLLSAEFLEQHYDRFFSEYEKLLHSENYVTKR  218 (330)
T ss_dssp             HHTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHH
T ss_pred             HHhh-HHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhC-HHHHHHHHHHhHHHHHHHHHHHhcCCchHHHH
Confidence            6554 567778888888999999999999999999999999888764 44444444433   466677899999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcCCCHHHHHHHHHHHH
Q 013228          355 VFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEKSVKILE  416 (447)
Q Consensus       355 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~a~~~l~  416 (447)
                      .+++.|+.++-...+...          ..+.+.+..-++.+..++.+++..|+-.|=.+..
T Consensus       219 qSlKLLgelLldr~N~~v----------m~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFK  270 (330)
T d1upka_         219 QSLKLLGELLLDRHNFTI----------MTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFK  270 (330)
T ss_dssp             HHHHHHHHHHHSGGGHHH----------HHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhHHHH----------HHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhh
Confidence            999999999976554331          2455555666888888888888877666555443

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=0.0081  Score=49.66  Aligned_cols=224  Identities=11%  Similarity=0.104  Sum_probs=159.2

Q ss_pred             hhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcH----HHHHHHHh-CcHHHHHHhcCCCCchhHhHHHHHHHHhhcCC
Q 013228          165 RPALPALAQLVHSNDKEVMTDACRALFYLSEGTND----EIQAVIEA-GVCPRLVELLGHPSPSVLTRALQTVVNIAAGD  239 (447)
Q Consensus       165 ~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~----~~~~~~~~-~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~  239 (447)
                      .+.+..++..|..-+-+.+.++..++.++.....+    ..+.+... .++..|+..-  .++++...+-..|..++. .
T Consensus        68 ~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gy--e~~eiAl~~G~mLREcik-~  144 (330)
T d1upka_          68 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRECIR-H  144 (330)
T ss_dssp             HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHHHT-S
T ss_pred             hChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhc--CCcchhhhhhHHHHHHHh-h
Confidence            56778888888889999999999999998865332    22333322 3344444443  345555555555555444 5


Q ss_pred             hhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcC---ChHHHHHHHhcCchhHHHHHHHH
Q 013228          240 DFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAVIDAG---LIGPLVNLLQNAEFDIKNWAARA  316 (447)
Q Consensus       240 ~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~---~~~~L~~~l~~~~~~v~~~a~~a  316 (447)
                      +...+.++....+..+.+.+..+ +-++...|..++..+....+.....++..+   ++.....++.++++-+|+.+...
T Consensus       145 e~lak~iL~s~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKL  223 (330)
T d1upka_         145 EPLAKIILWSEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKL  223 (330)
T ss_dssp             HHHHHHHHHSGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HHHHHHHHccHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            66778888888899999999999 999999999999988887777677776543   57777788899999999999999


Q ss_pred             HHHhcCCC-CHHHH-HHHHHcCChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHH--hch
Q 013228          317 ISNATFGG-THEQI-KYLVREGCIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEE--AEG  392 (447)
Q Consensus       317 L~~l~~~~-~~~~~-~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~  392 (447)
                      |+.+.... +.... .++.+..-+..++.+|++....++.-|..++.-++.+..+.          .++..++..  ...
T Consensus       224 LgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp----------~~I~~IL~~Nr~kL  293 (330)
T d1upka_         224 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKT----------QPILDILLKNQAKL  293 (330)
T ss_dssp             HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCC----------HHHHHHHHHTHHHH
T ss_pred             HHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCC----------HHHHHHHHHhHHHH
Confidence            99998642 22222 33333455888999999999999999998888888765543          234555542  344


Q ss_pred             HHHHHHHhcC
Q 013228          393 LEKIENLRSH  402 (447)
Q Consensus       393 ~~~l~~l~~~  402 (447)
                      ++.|.++..+
T Consensus       294 l~fl~~f~~d  303 (330)
T d1upka_         294 IEFLSKFQND  303 (330)
T ss_dssp             HHHHHHTTTT
T ss_pred             HHHHHhCCCC
Confidence            5556666543

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=96.96  E-value=0.089  Score=44.72  Aligned_cols=273  Identities=17%  Similarity=0.174  Sum_probs=152.2

Q ss_pred             HHHHHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh----CC---C
Q 013228           11 NMQLEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLMREDYPQLQFEAAWALKNIVSGTSEDTKVVID----HG---A   83 (447)
Q Consensus        11 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~----~~---~   83 (447)
                      +++-+.-..+..++..+ .+....=. ..-+-.|++++..-+ .+-....   ...+ ...++.+..+.+    .|   .
T Consensus        17 ~~~~~~~~~l~~L~~~~-~~~v~~~~-~~kF~~Lv~~lR~~~-~e~l~~v---~~~~-~~~~~~r~~~lDal~~~GT~~a   89 (336)
T d1lsha1          17 NLESEIHTVLKHLVENN-QLSVHEDA-PAKFLRLTAFLRNVD-AGVLQSI---WHKL-HQQKDYRRWILDAVPAMATSEA   89 (336)
T ss_dssp             CHHHHHHHHHHHHHHHC-SSSCCTTH-HHHHHHHHHHHTTSC-HHHHHHH---HHHH-TTSHHHHHHHHHHHHHHCSHHH
T ss_pred             CHHHHHHHHHHHHHHhc-ccccCcch-HHHHHHHHHHHHCCC-HHHHHHH---HHHH-hcChhHHHHHHHHHHHhCCHHH
Confidence            33344444566665543 22211000 012556777777776 2222222   1222 234555555443    23   4


Q ss_pred             hHHHHHhhCCCC--HHHHHHHHHHHHHhhcCChhHHHHHHhcCCHHHHHHHhcc---ccchhHHHHHHHHHHHhc----C
Q 013228           84 VPIFVKLLASPS--DDIREQAVCALGNVAADSARCRDLVLSEEALIPLLTQLNK---HAKLSMLRIATWTLSNFC----A  154 (447)
Q Consensus        84 i~~L~~ll~~~~--~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~---~~~~~~~~~a~~~L~~l~----~  154 (447)
                      +..+.+++.++.  ..-....+..+.....  | ..+.      +..+..++..   ..++.++..+..+++.+.    .
T Consensus        90 ~~~i~~~I~~~~ls~~ea~~~l~~l~~~~~--P-t~~~------l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~  160 (336)
T d1lsha1          90 LLFLKRTLASEQLTSAEATQIVASTLSNQQ--A-TRES------LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCA  160 (336)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHTCC--C-CHHH------HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHhccCC--C-CHHH------HHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhc
Confidence            556667666543  2223333334443322  2 2222      4445555532   234566666666666554    3


Q ss_pred             CCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCC-------CCchhHhH
Q 013228          155 GKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGH-------PSPSVLTR  227 (447)
Q Consensus       155 ~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-------~~~~v~~~  227 (447)
                      ..+.........+...+.+.....+.+-+..++.+|+|+..  +         +.++.+..++..       ....+|..
T Consensus       161 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p---------~~i~~l~~~l~~~~~~~~~~~~~vR~a  229 (336)
T d1lsha1         161 NTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQAE  229 (336)
T ss_dssp             TCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC--H---------hHHHHHHHHhcccccccccccHHHHHH
Confidence            33334344445555556666667777777888999999862  1         245677777743       24578999


Q ss_pred             HHHHHHHhhcCChhhHHHHHhcCChHHHHHhhc-cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cC
Q 013228          228 ALQTVVNIAAGDDFQTQCIINCGALPYLLGLLI-HNHKKSIKTDACWTISNITAGNSEHIQAVIDAGLIGPLVNLLQ-NA  305 (447)
Q Consensus       228 a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~-~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~~l~-~~  305 (447)
                      |++++.++....+....        +.+..++. ...+.++|..|+..+... .-+..         .+..+...+. .+
T Consensus       230 Ai~Alr~~~~~~p~~v~--------~~l~~i~~n~~e~~EvRiaA~~~lm~t-~P~~~---------~l~~i~~~l~~E~  291 (336)
T d1lsha1         230 AIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIRSCIVFFES-KPSVA---------LVSMVAVRLRREP  291 (336)
T ss_dssp             HHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHHHHHHHHHT-CCCHH---------HHHHHHHHHTTCS
T ss_pred             HHHHHHHhhhcCcHHHH--------HHHHHHHcCCCCChHHHHHHHHHHHhc-CCCHH---------HHHHHHHHHHhCc
Confidence            99999999876653322        23444443 333788999888887663 22333         3445566665 45


Q ss_pred             chhHHHHHHHHHHHhcCCCCHHH
Q 013228          306 EFDIKNWAARAISNATFGGTHEQ  328 (447)
Q Consensus       306 ~~~v~~~a~~aL~~l~~~~~~~~  328 (447)
                      +..|.......|.+++....|..
T Consensus       292 ~~QV~sfv~S~l~~la~s~~P~~  314 (336)
T d1lsha1         292 NLQVASFVYSQMRSLSRSSNPEF  314 (336)
T ss_dssp             CHHHHHHHHHHHHHHTTCCSGGG
T ss_pred             HHHHHHHHHHHHHHHHhCCCcch
Confidence            78888888889999988766544

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.74  E-value=0.00024  Score=57.56  Aligned_cols=151  Identities=15%  Similarity=0.053  Sum_probs=72.8

Q ss_pred             HHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHh
Q 013228          169 PALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIEAGVCPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIIN  248 (447)
Q Consensus       169 ~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~  248 (447)
                      ..|..+++++++.|+..+...|.                  .+.+..++.+++..|+..+...+.               
T Consensus        69 ~~L~~Ll~D~d~~VR~~AA~~Lp------------------~~~L~~L~~D~d~~VR~~aa~~l~---------------  115 (233)
T d1lrva_          69 EALTPLIRDSDEVVRRAVAYRLP------------------REQLSALMFDEDREVRITVADRLP---------------  115 (233)
T ss_dssp             GGGGGGTTCSSHHHHHHHHTTSC------------------SGGGGGTTTCSCHHHHHHHHHHSC---------------
T ss_pred             HHHHHHhcCCCHHHHHHHHHHcC------------------HHHHHHHhcCCChhHHHHHHhccC---------------
Confidence            34667888999999988875431                  123445555666666655543221               


Q ss_pred             cCChHHHHHhhccCCchhHHHHHHHHH-----HHHhc-CCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHH-----
Q 013228          249 CGALPYLLGLLIHNHKKSIKTDACWTI-----SNITA-GNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAI-----  317 (447)
Q Consensus       249 ~~~l~~l~~~l~~~~~~~v~~~a~~~l-----~nl~~-~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL-----  317 (447)
                         .+.|..++.++ +..||..++..+     ..+.. ..++....+...-..+.|..+++++++.||..++..+     
T Consensus       116 ---~~~L~~Ll~D~-d~~VR~~aa~~~~~~~L~~L~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~L~~~~L  191 (233)
T d1lrva_         116 ---LEQLEQMAADR-DYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLRGDDL  191 (233)
T ss_dssp             ---TGGGGGGTTCS-SHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHCCGGGG
T ss_pred             ---HHHHHHHhcCC-CHHHHHHHHhccchhHHHHHhcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHhcCcHHH
Confidence               12233333333 444444433221     11111 1222222222222345556666667777777766543     


Q ss_pred             HHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHH
Q 013228          318 SNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFL  357 (447)
Q Consensus       318 ~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~  357 (447)
                      ..++...+...+....+. ....++..|.+++++++..+.
T Consensus       192 ~~l~~D~d~~VR~aaae~-~~~~ll~~L~D~d~~VR~aA~  230 (233)
T d1lrva_         192 LELLHDPDWTVRLAAVEH-ASLEALRELDEPDPEVRLAIA  230 (233)
T ss_dssp             GGGGGCSSHHHHHHHHHH-SCHHHHHHCCCCCHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHh-ccHHHHHHhCCCCHHHHHHHH
Confidence            233333333333333332 233445556667777766654

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.72  E-value=0.066  Score=52.84  Aligned_cols=225  Identities=10%  Similarity=0.093  Sum_probs=119.7

Q ss_pred             CCCHHHHHHHHHHHHHHHccCCCCch--hhh-hccCCHHHH----HHhhcCCC--CHHHHHHHHHHHHHHcCCChhhHHH
Q 013228            7 SDDNNMQLEATTHIRKLLSNARSAPT--EEV-IPFGVVPRF----VEFLMRED--YPQLQFEAAWALKNIVSGTSEDTKV   77 (447)
Q Consensus         7 s~~~~~~~~a~~~l~~l~~~~~~~~~--~~~-~~~~~v~~L----~~ll~~~~--~~~v~~~a~~~L~~l~~~~~~~~~~   77 (447)
                      +.+...+..+...+..+.........  ... ......+.+    ...+.+.+  .+.++..++++++..+....  ...
T Consensus       416 ~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~--~~~  493 (959)
T d1wa5c_         416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--KAQ  493 (959)
T ss_dssp             --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--HHH
T ss_pred             ccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhcc--HHH
Confidence            34566666777777776654211110  000 001122222    23333322  26789999999999886322  122


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChhH--------HHHHHhcCCH----HHHHHHhccccch----hH
Q 013228           78 VIDHGAVPIFVKLLASPSDDIREQAVCALGNVAADSARC--------RDLVLSEEAL----IPLLTQLNKHAKL----SM  141 (447)
Q Consensus        78 ~~~~~~i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~~~~--------~~~~~~~~~l----~~l~~~l~~~~~~----~~  141 (447)
                      +  ..+++.++..|.+++..++..|++++..++......        .+.+  ...+    ..++..+......    ..
T Consensus       494 ~--~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l--~p~l~~ll~~L~~~l~~~~~~~~~~~~  569 (959)
T d1wa5c_         494 L--IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDI--SNSTEILLKNLIALILKHGSSPEKLAE  569 (959)
T ss_dssp             H--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGT--TTTHHHHHHHHHHHHHTTCCCHHHHTS
T ss_pred             H--HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHH--HhhHHHHHHHHHHHHHhhcchhhhHHH
Confidence            2  246888999999999999999999999998532210        0000  1123    3344444221111    11


Q ss_pred             HHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhc----c-CChhHHHHHHHHHHHhccCC-cHHHHHHHHhCcHHHHHH
Q 013228          142 LRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVH----S-NDKEVMTDACRALFYLSEGT-NDEIQAVIEAGVCPRLVE  215 (447)
Q Consensus       142 ~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~----~-~~~~v~~~al~~l~~l~~~~-~~~~~~~~~~~~~~~L~~  215 (447)
                      ...+..++..+..............+++.+...+.    + .++.....+..++..+.... +.... -....++|.+..
T Consensus       570 ~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~-~l~~~l~p~i~~  648 (959)
T d1wa5c_         570 NEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLP-LLVDSMMPTFLT  648 (959)
T ss_dssp             CHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhcCchhHH-HHHHHHHHHHHH
Confidence            23355555554433323333344455555555442    2 24666677777777766432 22222 234456788888


Q ss_pred             hcCCCCchhHhHHHHHHHHhhcC
Q 013228          216 LLGHPSPSVLTRALQTVVNIAAG  238 (447)
Q Consensus       216 lL~~~~~~v~~~a~~~l~~l~~~  238 (447)
                      .+..........++..+..+...
T Consensus       649 ~~~~~~~~~~~~~~~l~~~~~~~  671 (959)
T d1wa5c_         649 VFSEDIQEFIPYVFQIIAFVVEQ  671 (959)
T ss_dssp             HHHTTCTTTHHHHHHHHHHHHHH
T ss_pred             HHhccchhHHHHHHHHHHHHHHh
Confidence            88776666777777777766543

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.70  E-value=0.00076  Score=54.50  Aligned_cols=114  Identities=10%  Similarity=0.142  Sum_probs=73.1

Q ss_pred             HHHHHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 013228          210 CPRLVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHNHKKSIKTDACWTISNITAGNSEHIQAV  289 (447)
Q Consensus       210 ~~~L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l  289 (447)
                      +..|..+++++++.||..++..|+                  .+.+..++.++ +..||..++..+.             
T Consensus        68 ~~~L~~Ll~D~d~~VR~~AA~~Lp------------------~~~L~~L~~D~-d~~VR~~aa~~l~-------------  115 (233)
T d1lrva_          68 VEALTPLIRDSDEVVRRAVAYRLP------------------REQLSALMFDE-DREVRITVADRLP-------------  115 (233)
T ss_dssp             GGGGGGGTTCSSHHHHHHHHTTSC------------------SGGGGGTTTCS-CHHHHHHHHHHSC-------------
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHcC------------------HHHHHHHhcCC-ChhHHHHHHhccC-------------
Confidence            456778889999999998875431                  24566777788 8999988765431             


Q ss_pred             HHcCChHHHHHHHhcCchhHHHHHHHH-----HHHhcCCCCHHHHHHHHHcCChHHHHhhccCCCHHHHHHHHHHH
Q 013228          290 IDAGLIGPLVNLLQNAEFDIKNWAARA-----ISNATFGGTHEQIKYLVREGCIKPLCDLLLCADPEIVTVFLKGL  360 (447)
Q Consensus       290 ~~~~~~~~L~~~l~~~~~~v~~~a~~a-----L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~~~a~~~l  360 (447)
                           .+.|..++.++++.||..++..     |..+....+++.+..+...-..+.|..++++.++.++..+...+
T Consensus       116 -----~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~L  186 (233)
T d1lrva_         116 -----LEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRL  186 (233)
T ss_dssp             -----TGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHC
T ss_pred             -----HHHHHHHhcCCCHHHHHHHHhccchhHHHHHhcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHhc
Confidence                 2234445556666666666543     33333444555555555544566777778888888887776543

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.29  E-value=0.07  Score=45.53  Aligned_cols=161  Identities=14%  Similarity=0.087  Sum_probs=112.6

Q ss_pred             hhHHHHHhcCChHHHHHhhc----c------CCchhHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHHHhcCchhH
Q 013228          241 FQTQCIINCGALPYLLGLLI----H------NHKKSIKTDACWTISNITAGNSEHIQAVID-AGLIGPLVNLLQNAEFDI  309 (447)
Q Consensus       241 ~~~~~~~~~~~l~~l~~~l~----~------~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-~~~~~~L~~~l~~~~~~v  309 (447)
                      ...+.+ ..+++..|+.+|.    .      ..+.....++..|+..+... ......+++ .+.+..+...+.++.+.+
T Consensus        37 sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~-~~G~~~vl~~~~~i~~l~~~L~s~~~~t  114 (343)
T d2bnxa1          37 SWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNM  114 (343)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTCCTTSHHH
T ss_pred             hHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhcc-HHHHHHHHcChHHHHHHHHccCCCchHH
Confidence            444445 3456666666552    1      11345677888999888664 455666665 667888999898999999


Q ss_pred             HHHHHHHHHHhcCCCCH-HH----------HHHHHHcCChHHHHhhccCC-CHHHHHHHHHHHHHHHHhhhhhhhhhhhc
Q 013228          310 KNWAARAISNATFGGTH-EQ----------IKYLVREGCIKPLCDLLLCA-DPEIVTVFLKGLEKILKVGEAEKNMDIAI  377 (447)
Q Consensus       310 ~~~a~~aL~~l~~~~~~-~~----------~~~l~~~~~l~~L~~ll~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~  377 (447)
                      +..|...|..++....+ +.          .....+.+-...+++.++.. +.+....++..+..++...+......   
T Consensus       115 r~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~R~---  191 (343)
T d2bnxa1         115 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRV---  191 (343)
T ss_dssp             HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHH---
T ss_pred             HHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHHHH---
Confidence            99999999888754221 11          12233456688888888765 56888888888988887766544332   


Q ss_pred             ccccHHHHHHHHhchHHHHHHHhcCCCHHHHHH
Q 013228          378 GDVNQYAQLVEEAEGLEKIENLRSHDNDEIHEK  410 (447)
Q Consensus       378 ~~~~~~~~~i~~~~~~~~l~~l~~~~~~~v~~~  410 (447)
                          .++..|...|..+.+..+.+.+++++...
T Consensus       192 ----~lR~E~~~~Gl~~il~~l~~~~~~~L~~Q  220 (343)
T d2bnxa1         192 ----HIRSELMRLGLHQVLQELREIENEDMKVQ  220 (343)
T ss_dssp             ----HHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred             ----HHHHHHHHCChHHHHHHHHccCChHHHHH
Confidence                26788889999999999999888887543

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.13  E-value=0.15  Score=50.07  Aligned_cols=257  Identities=9%  Similarity=0.060  Sum_probs=132.1

Q ss_pred             HHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhh----C--CCCHHHHHHHHHHHHHhhcCChhHHHHHHh----cC
Q 013228           55 QLQFEAAWALKNIVSGTSEDTKVVIDHGAVPIFVKLL----A--SPSDDIREQAVCALGNVAADSARCRDLVLS----EE  124 (447)
Q Consensus        55 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll----~--~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~----~~  124 (447)
                      ..+..+...+..++...++.....    +.+.+...+    .  +.+...++.+..+++.+.............    ..
T Consensus       376 ~~r~~a~~ll~~l~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~  451 (959)
T d1wa5c_         376 TRRRACTDFLKELKEKNEVLVTNI----FLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN  451 (959)
T ss_dssp             CHHHHHHHHHHHHHHHCHHHHHHH----HHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred             cHHHHHHHHHHHHHHhccccchHH----HHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhh
Confidence            345666666777765433322111    122222222    2  246778888888888876322110000000    01


Q ss_pred             CH----HHHHHHhc--cccchhHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCc
Q 013228          125 AL----IPLLTQLN--KHAKLSMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTN  198 (447)
Q Consensus       125 ~l----~~l~~~l~--~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~  198 (447)
                      ..    +.+...+.  ......++..++|+++..+...   .......+++.++.+|.+++..++..|++++..++....
T Consensus       452 ~~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~---~~~~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~  528 (959)
T d1wa5c_         452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL---TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRE  528 (959)
T ss_dssp             HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS---CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred             HHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhc
Confidence            11    12222232  2234567888999999988643   234457889999999999999999999999999885321


Q ss_pred             H-----------HHHHHHHhCcHHHHHHhcCCCCch-----hHhHHHHHHHHhhcCCh----hhHHHHHhcCChHHHHHh
Q 013228          199 D-----------EIQAVIEAGVCPRLVELLGHPSPS-----VLTRALQTVVNIAAGDD----FQTQCIINCGALPYLLGL  258 (447)
Q Consensus       199 ~-----------~~~~~~~~~~~~~L~~lL~~~~~~-----v~~~a~~~l~~l~~~~~----~~~~~~~~~~~l~~l~~~  258 (447)
                      .           ...... ..++..++..+......     ....++.++..+.....    .....++. .+...+...
T Consensus       529 ~~~~~~~~~~~~~l~p~l-~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~-~l~~~~~~~  606 (959)
T d1wa5c_         529 SNTSPAFIFHKEDISNST-EILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLA-QFIEIVTIM  606 (959)
T ss_dssp             CSSSCCBSSCGGGTTTTH-HHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHH-HHHHHHHHH
T ss_pred             ccccchhhccHHHHHhhH-HHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            1           000011 12344455554332211     12335556655543211    12222221 122222233


Q ss_pred             hccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCchhHHHHHHHHHHHhc
Q 013228          259 LIHNHKKSIKTDACWTISNITA-GNSEHIQAVIDAGLIGPLVNLLQNAEFDIKNWAARAISNAT  321 (447)
Q Consensus       259 l~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~~l~~~~~~v~~~a~~aL~~l~  321 (447)
                      .+++.+.........+++.+.. .+++....+. ..++|.+...+.....+....+...+..+.
T Consensus       607 ~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l~-~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~  669 (959)
T d1wa5c_         607 AKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV-DSMMPTFLTVFSEDIQEFIPYVFQIIAFVV  669 (959)
T ss_dssp             TTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH-HHHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred             hcCccchHHHHHHHHHHHHHHHhcCchhHHHHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence            3444356667777777777765 2334333333 336777777777666666666666555443

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.02  E-value=0.53  Score=39.82  Aligned_cols=144  Identities=12%  Similarity=0.109  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHccCCCCchhhhhccCCHHHHHHhhc----CC------CCHHHHHHHHHHHHHHcCCChhhHHHHHhCCC
Q 013228           14 LEATTHIRKLLSNARSAPTEEVIPFGVVPRFVEFLM----RE------DYPQLQFEAAWALKNIVSGTSEDTKVVIDHGA   83 (447)
Q Consensus        14 ~~a~~~l~~l~~~~~~~~~~~~~~~~~v~~L~~ll~----~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~   83 (447)
                      ...+..|+--+..++..-.+.+ ..+++..|+.+|.    .+      .+...+..++.||..+..........+-..++
T Consensus        21 ~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~   99 (343)
T d2bnxa1          21 LSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEG   99 (343)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSH
T ss_pred             HHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHHHcChHH
Confidence            3444444444444312224445 3456666776653    11      12467889999999999955455555566689


Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhcCC--hhHHHH----------HHhcCCHHHHHHHhccccchhHHHHHHHHHHH
Q 013228           84 VPIFVKLLASPSDDIREQAVCALGNVAADS--ARCRDL----------VLSEEALIPLLTQLNKHAKLSMLRIATWTLSN  151 (447)
Q Consensus        84 i~~L~~ll~~~~~~i~~~a~~~L~~l~~~~--~~~~~~----------~~~~~~l~~l~~~l~~~~~~~~~~~a~~~L~~  151 (447)
                      +..+...+.++.+.++..++..|..+|..+  +.....          ..+.+-..+++..+....+.+....++..+..
T Consensus       100 i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~  179 (343)
T d2bnxa1         100 ILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINA  179 (343)
T ss_dssp             HHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            999999999999999999999999998542  111111          22345678888888666677777777777777


Q ss_pred             hcCCCCC
Q 013228          152 FCAGKPK  158 (447)
Q Consensus       152 l~~~~~~  158 (447)
                      +....+.
T Consensus       180 li~~~~d  186 (343)
T d2bnxa1         180 LITPAEE  186 (343)
T ss_dssp             HHTTCSC
T ss_pred             HHcCccc
Confidence            7766544

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=94.13  E-value=1.1  Score=37.67  Aligned_cols=199  Identities=15%  Similarity=0.153  Sum_probs=100.5

Q ss_pred             hHHHHHHHHHHHhcCCCCCCChhhHhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCcHHHHHHHH----hC---cHHH
Q 013228          140 SMLRIATWTLSNFCAGKPKPIFDQVRPALPALAQLVHSNDKEVMTDACRALFYLSEGTNDEIQAVIE----AG---VCPR  212 (447)
Q Consensus       140 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~----~~---~~~~  212 (447)
                      ++....-.++..|+.............-+-.++++++.-+.+-......-+.    ..+.....+.+    .|   .+..
T Consensus        17 ~~~~~~~~~l~~L~~~~~~~v~~~~~~kF~~Lv~~lR~~~~e~l~~v~~~~~----~~~~~r~~~lDal~~~GT~~a~~~   92 (336)
T d1lsha1          17 NLESEIHTVLKHLVENNQLSVHEDAPAKFLRLTAFLRNVDAGVLQSIWHKLH----QQKDYRRWILDAVPAMATSEALLF   92 (336)
T ss_dssp             CHHHHHHHHHHHHHHHCSSSCCTTHHHHHHHHHHHHTTSCHHHHHHHHHHHT----TSHHHHHHHHHHHHHHCSHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCHHHHHHHHHHHh----cChhHHHHHHHHHHHhCCHHHHHH
Confidence            4445555566666554422222222333446777777666554444332221    12222222222    23   3555


Q ss_pred             HHHhcCCCCchhHhHHHHHHHHhhcCChhhHHHHHhcCChHHHHHhhccC---CchhHHHHHHHHHHHHhcC----CHHH
Q 013228          213 LVELLGHPSPSVLTRALQTVVNIAAGDDFQTQCIINCGALPYLLGLLIHN---HKKSIKTDACWTISNITAG----NSEH  285 (447)
Q Consensus       213 L~~lL~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~---~~~~v~~~a~~~l~nl~~~----~~~~  285 (447)
                      +..++.+++..... +...+..+........+      .+..+.+++.++   .++.++..+..+++++...    .+..
T Consensus        93 i~~~I~~~~ls~~e-a~~~l~~l~~~~~Pt~~------~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~  165 (336)
T d1lsha1          93 LKRTLASEQLTSAE-ATQIVASTLSNQQATRE------SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSC  165 (336)
T ss_dssp             HHHHHHTTCSCHHH-HHHHHHHHHHTCCCCHH------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred             HHHHHHcCCCCHHH-HHHHHHHHhccCCCCHH------HHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCC
Confidence            66666554433322 23333333322111111      233556666542   2677888888888877641    1110


Q ss_pred             HHHHHHcCChHHHHH----HHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccC-------CCHHHHH
Q 013228          286 IQAVIDAGLIGPLVN----LLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC-------ADPEIVT  354 (447)
Q Consensus       286 ~~~l~~~~~~~~L~~----~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-------~~~~~~~  354 (447)
                           ...+++.+.+    ....++.+-+..++.+|+|+....            .++.|..++..       ..+.++.
T Consensus       166 -----~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~p~------------~i~~l~~~l~~~~~~~~~~~~~vR~  228 (336)
T d1lsha1         166 -----PDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQPN------------SIKKIQRFLPGQGKSLDEYSTRVQA  228 (336)
T ss_dssp             -----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCGG------------GHHHHHTTSTTSSSCCCCSCHHHHH
T ss_pred             -----cHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCCHh------------HHHHHHHHhcccccccccccHHHHH
Confidence                 1123333444    344567777788899999996421            35555555543       2456788


Q ss_pred             HHHHHHHHHHHh
Q 013228          355 VFLKGLEKILKV  366 (447)
Q Consensus       355 ~a~~~l~~l~~~  366 (447)
                      .|++++.++...
T Consensus       229 aAi~Alr~~~~~  240 (336)
T d1lsha1         229 EAIMALRNIAKR  240 (336)
T ss_dssp             HHHHTTTTGGGT
T ss_pred             HHHHHHHHhhhc
Confidence            888887776543

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.34  E-value=1  Score=32.42  Aligned_cols=73  Identities=8%  Similarity=-0.094  Sum_probs=59.7

Q ss_pred             ChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccC------CCHHHHHHHHHHHHHHHHh
Q 013228          294 LIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC------ADPEIVTVFLKGLEKILKV  366 (447)
Q Consensus       294 ~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~~~~~a~~~l~~l~~~  366 (447)
                      .+..|..-+.++++.++..|+..|-.+..++.+.....+.+.++++.|+.++..      .++.++..++..+..-...
T Consensus        46 a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~  124 (145)
T d1ujka_          46 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG  124 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHH
Confidence            355577778889999999999999999999888888888888899999998863      4567888888888776543

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.29  E-value=0.48  Score=34.27  Aligned_cols=72  Identities=17%  Similarity=0.191  Sum_probs=56.5

Q ss_pred             ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhc-CCCHHHHHHHHHHH
Q 013228          337 CIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRS-HDNDEIHEKSVKIL  415 (447)
Q Consensus       337 ~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~-~~~~~v~~~a~~~l  415 (447)
                      ++..|..-+.++++.++..|+..|..+++++...            |...+...+.++.|..+.. ..+..|+.++..++
T Consensus        43 a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~------------f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li  110 (145)
T d1dvpa1          43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAP------------VHEEVFTKENCEMFSSFLESTPHENVRQKMLELV  110 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH------------HHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchH------------HHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            4666777788899999999999999999987653            4566666677777777754 45788999999999


Q ss_pred             HHhcC
Q 013228          416 ETYWC  420 (447)
Q Consensus       416 ~~~~~  420 (447)
                      +.+..
T Consensus       111 ~~W~~  115 (145)
T d1dvpa1         111 QTWAY  115 (145)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98755

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.80  E-value=1.3  Score=31.68  Aligned_cols=73  Identities=10%  Similarity=-0.074  Sum_probs=59.0

Q ss_pred             ChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccC------CCHHHHHHHHHHHHHHHHh
Q 013228          294 LIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC------ADPEIVTVFLKGLEKILKV  366 (447)
Q Consensus       294 ~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~~~~~a~~~l~~l~~~  366 (447)
                      .+..|..-+.++++.++..|+..|-.+..++.+.....+...++++.|+.++..      .++.++..++..+......
T Consensus        39 a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~~  117 (143)
T d1mhqa_          39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW  117 (143)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            345566777889999999999999999998888888888888889999998863      4668888888888777553

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.32  E-value=1  Score=32.28  Aligned_cols=72  Identities=13%  Similarity=0.097  Sum_probs=56.7

Q ss_pred             ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhc------CCCHHHHHH
Q 013228          337 CIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRS------HDNDEIHEK  410 (447)
Q Consensus       337 ~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~------~~~~~v~~~  410 (447)
                      ++..|..-+.++++.++..++..|..+++++...            |...+....+++.|..+..      ..++.|+.+
T Consensus        39 a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~------------fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~k  106 (143)
T d1mhqa_          39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEK------------FHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGR  106 (143)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH------------HHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHH------------HHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHH
Confidence            4566667778889999999999999999987553            5667777788888888865      357889999


Q ss_pred             HHHHHHHhcC
Q 013228          411 SVKILETYWC  420 (447)
Q Consensus       411 a~~~l~~~~~  420 (447)
                      +..++..+..
T Consensus       107 il~li~~Wa~  116 (143)
T d1mhqa_         107 VIEILFSWTV  116 (143)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999987643

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.24  E-value=0.92  Score=32.68  Aligned_cols=72  Identities=14%  Similarity=0.151  Sum_probs=58.0

Q ss_pred             ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhc------CCCHHHHHH
Q 013228          337 CIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRS------HDNDEIHEK  410 (447)
Q Consensus       337 ~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~------~~~~~v~~~  410 (447)
                      ++..|..-+.+.++.++..++..|..+++++...            |...+.+.++++.|..+..      ..+..|+.+
T Consensus        46 a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~------------f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~k  113 (145)
T d1ujka_          46 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKR------------FHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNK  113 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHH------------HHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHH------------HHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHH
Confidence            4666777778899999999999999999987553            5677777888888888864      357889999


Q ss_pred             HHHHHHHhcC
Q 013228          411 SVKILETYWC  420 (447)
Q Consensus       411 a~~~l~~~~~  420 (447)
                      +..++..+..
T Consensus       114 il~li~~W~~  123 (145)
T d1ujka_         114 ILELLYSWTV  123 (145)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988753

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.69  E-value=1.4  Score=31.92  Aligned_cols=73  Identities=14%  Similarity=0.135  Sum_probs=57.3

Q ss_pred             ChHHHHhhccCCCHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccHHHHHHHHhchHHHHHHHhcC------CCHHHHHH
Q 013228          337 CIKPLCDLLLCADPEIVTVFLKGLEKILKVGEAEKNMDIAIGDVNQYAQLVEEAEGLEKIENLRSH------DNDEIHEK  410 (447)
Q Consensus       337 ~l~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l~~~------~~~~v~~~  410 (447)
                      ++..|..-+.+.++.++..++..|..+++++...            |...+....+++.|..+...      .+..|+.+
T Consensus        40 a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~------------F~~evask~Fl~~l~kli~~k~~~~~~~~~Vk~k  107 (151)
T d1juqa_          40 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRR------------FHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTK  107 (151)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH------------HHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHH------------HHHHHhhHHHHHHHHHHHcccCCCCcccHHHHHH
Confidence            4566666777888999999999999999987654            56667677788888888653      36789999


Q ss_pred             HHHHHHHhcCC
Q 013228          411 SVKILETYWCG  421 (447)
Q Consensus       411 a~~~l~~~~~~  421 (447)
                      +..++..+...
T Consensus       108 il~ll~~Wa~~  118 (151)
T d1juqa_         108 VIELLYSWTMA  118 (151)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999987553

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.18  E-value=4.6  Score=29.01  Aligned_cols=72  Identities=8%  Similarity=-0.068  Sum_probs=56.2

Q ss_pred             ChHHHHHHHhcCchhHHHHHHHHHHHhcCCCCHHHHHHHHHcCChHHHHhhccC------CCHHHHHHHHHHHHHHHH
Q 013228          294 LIGPLVNLLQNAEFDIKNWAARAISNATFGGTHEQIKYLVREGCIKPLCDLLLC------ADPEIVTVFLKGLEKILK  365 (447)
Q Consensus       294 ~~~~L~~~l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~~~~~a~~~l~~l~~  365 (447)
                      ++..|..-+.++++.++..|+..|-.+..++.+.....+.+..+++.|..++..      .++.++..++..+..-..
T Consensus        40 a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~Fl~~l~kli~~k~~~~~~~~~Vk~kil~ll~~Wa~  117 (151)
T d1juqa_          40 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM  117 (151)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHHHHHHHHcccCCCCcccHHHHHHHHHHHHHHHH
Confidence            455566777888999999999999999998877777777777888888888864      355788888777777654