Citrus Sinensis ID: 013234

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------
MVDSKKHISQQDLKGHNKPGDLWISVQGKVYNVTDWTKHHPGGDLPLLSLAGQDVTDAFVAYHPGAAWQYLDKFFTGYYLEDYTVSEASKDYRKLVAEFSKMGLFEKKGHCALYTFVFMAMLFAVSIYGVFCSDSTWVHLCSGGLMGLLWIQSGWIGHDSGHYQVMSSRGINRIVQVLTGNCLAGISIAWWKRNHNAHHIACNSLDFDPDLQHMPFFVVSSKFFNSITSCYYERKLHFDSVARFLVSYQHWTFYPVMCLARINLFAQSFLLLLSKKNVPNRVQEIFGILVFWIWYPLLISCLPNWGERVMFIVASFSVTGIQHVQFCLNHFSSNVYVGPPCSNDWFRKQTQGTLNIKCSSWMDWFHGGLQFQVEHHLFPRLPRCNLRKVSPFVVELCKKHNLPYNIVSFWKSNAMTVETLQAAALQARDLSRPVPRNLVWEAVNTHG
cccccccccHHHHHcccccccEEEEEccEEEEcccccccccccHHHHHHcccccccHHHHHcccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHcccccccHHHHHHHHcccccccccccccccccccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHEEEEEEcccccccccccccccccHHHHHHHcccccccccccccEEEccccccccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHccc
ccccccEEcHHHHHHHcccccEEEEEEcEEEEHHHHHHHccccHHHHHHHccccHHHHHHHHccHHHHHHHHHccccccccccccccHcHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccHHHcccccHHHHHHHHHHHHHccccHHHHHHccccccccccccccccccccccEEEEccHHHcccccccccEEEccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHEEEHHHHHccEEEEEEEEccccccccccccccccHHHHHHHHccccccccHHHHHHccccEEEEHccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHccc
mvdskkhisqqdlkghnkpgdlwisvqgkvynvtdwtkhhpggdlpllslagqdvTDAFVAYHPGAAWQYLDKFftgyyledytvseaSKDYRKLVAEFSKMglfekkghcaLYTFVFMAMLFAVSIYGvfcsdstwvhlCSGGLMGLLWIqsgwighdsgHYQVMSSRGINRIVQVLTGNCLAGISIAWWkrnhnahhiacnsldfdpdlqhmpffvvsSKFFNSITSCYYERKLHFDSVARFLVSYQHWTFYPVMCLARINLFAQSFLLLLSKKNVPNRVQEIFGILVFWIWYPLLISCLPNWGERVMFIVASFSVTGIQHVQFCLNHFssnvyvgppcsndwfrkqtqgtlnikcsswmdwfhgglqfqvehhlfprlprcnlrkvsPFVVELCkkhnlpynIVSFWKSNAMTVETLQAAALQArdlsrpvprnLVWEAVNTHG
mvdskkhisqqdlkghnkpgdlwISVQGKVYNVTDWTKHHPGGDLPLLSLAGQDVTDAFVAYHPGAAWQYLDKFFTGYYLEDYTVSEASKDYRKLVAEFSKMGLFEKKGHCALYTFVFMAMLFAVSIYGVFCSDSTWVHLCSGGLMGLLWIQSGWIGHDSGHYQVMSSRGINRIVQVLTGNCLAGISIAWWKRNHNAHHIACNSLDFDPDLQHMPFFVVSSKFFNSITSCYYERKLHFDSVARFLVSYQHWTFYPVMCLARINLFAQSFLLLLSKKNVPNRVQEIFGILVFWIWYPLLISCLPNWGERVMFIVASFSVTGIQHVQFCLNHFSSNVYVGPPCSNDWFRKQTQGTLNIKCSSWMDWFHGGLQFQVEHHLFPRLPRCNLRKVSPFVVELCKKHNLPYNIVSFWKSNAMTVETLQAAALqardlsrpvprnLVWEAVNTHG
MVDSKKHISQQDLKGHNKPGDLWISVQGKVYNVTDWTKHHPGGDLPLLSLAGQDVTDAFVAYHPGAAWQYLDKFFTGYYLEDYTVSEASKDYRKLVAEFSKMGLFEKKGHCALYTFVFMAMLFAVSIYGVFCSDSTWVHLCSGGLMGLLWIQSGWIGHDSGHYQVMSSRGINRIVQVLTGNCLAGISIAWWKRNHNAHHIACNSLDFDPDLQHMPFFVVSSKFFNSITSCYYERKLHFDSVARFLVSYQHWTFYPVMCLARINLFAQSFLLLLSKKNVPNRVQEIFGILVFWIWYPLLISCLPNWGERVMFIVASFSVTGIQHVQFCLNHFSSNVYVGPPCSNDWFRKQTQGTLNIKCSSWMDWFHGGLQFQVEHHLFPRLPRCNLRKVSPFVVELCKKHNLPYNIVSFWKSNAMTVETLQAAALQARDLSRPVPRNLVWEAVNTHG
********************DLWISVQGKVYNVTDWTKHHPGGDLPLLSLAGQDVTDAFVAYHPGAAWQYLDKFFTGYYLEDYTVSEASKDYRKLVAEFSKMGLFEKKGHCALYTFVFMAMLFAVSIYGVFCSDSTWVHLCSGGLMGLLWIQSGWIGHDSGHYQVMSSRGINRIVQVLTGNCLAGISIAWWKRNHNAHHIACNSLDFDPDLQHMPFFVVSSKFFNSITSCYYERKLHFDSVARFLVSYQHWTFYPVMCLARINLFAQSFLLLLSKKNVPNRVQEIFGILVFWIWYPLLISCLPNWGERVMFIVASFSVTGIQHVQFCLNHFSSNVYVGPPCSNDWFRKQTQGTLNIKCSSWMDWFHGGLQFQVEHHLFPRLPRCNLRKVSPFVVELCKKHNLPYNIVSFW*************************************
*****KH***QDLKGHNKPGDLWISVQGKVYNVTDWTKHHPGGDLPLLSLAGQDVTDAFVAYHPGAAWQYLDKFFTGYYLEDYTVSEASKDYRKLVAEFSKMGLFEKKGHCALYTFVFMAMLFAVSIYGVFCSDSTWVHLCSGGLMGLLWIQSGWIGHDSGHYQVMSSRGINRIVQVLTGNCLAGISIAWWKRNHNAHHIACNSLDFDPDLQHMPFFVVSSKFFNSITSCYYERKLHFDSVARFLVSYQHWTFYPVMCLARINLFAQSFLLLLSKKNVPNRVQEIFGILVFWIWYPLLISCLPNWGERVMFIVASFSVTGIQHVQFCLNHFSS**********DWFRKQTQGTLNIKCSSWMDWFHGGLQFQVEHHLFPRLPRCNLRKVSPFVVELCKKHNLPYNIVSFWKSNAMTVETLQAAALQARDLSRPVPRNLVWEAVN***
*************KGHNKPGDLWISVQGKVYNVTDWTKHHPGGDLPLLSLAGQDVTDAFVAYHPGAAWQYLDKFFTGYYLEDYTVSEASKDYRKLVAEFSKMGLFEKKGHCALYTFVFMAMLFAVSIYGVFCSDSTWVHLCSGGLMGLLWIQSGWIGHDSGHYQVMSSRGINRIVQVLTGNCLAGISIAWWKRNHNAHHIACNSLDFDPDLQHMPFFVVSSKFFNSITSCYYERKLHFDSVARFLVSYQHWTFYPVMCLARINLFAQSFLLLLSKKNVPNRVQEIFGILVFWIWYPLLISCLPNWGERVMFIVASFSVTGIQHVQFCLNHFSSNVYVGPPCSNDWFRKQTQGTLNIKCSSWMDWFHGGLQFQVEHHLFPRLPRCNLRKVSPFVVELCKKHNLPYNIVSFWKSNAMTVETLQAAALQARDLSRPVPRNLVWEAVNTHG
****KKHISQQDLKGHNKPGDLWISVQGKVYNVTDWTKHHPGGDLPLLSLAGQDVTDAFVAYHPGAAWQYLDKFFTGYYLEDYTVSEASKDYRKLVAEFSKMGLFEKKGHCALYTFVFMAMLFAVSIYGVFCSDSTWVHLCSGGLMGLLWIQSGWIGHDSGHYQVMSSRGINRIVQVLTGNCLAGISIAWWKRNHNAHHIACNSLDFDPDLQHMPFFVVSSKFFNSITSCYYERKLHFDSVARFLVSYQHWTFYPVMCLARINLFAQSFLLLLSKKNVPNRVQEIFGILVFWIWYPLLISCLPNWGERVMFIVASFSVTGIQHVQFCLNHFSSNVYVGPPCSNDWFRKQTQGTLNIKCSSWMDWFHGGLQFQVEHHLFPRLPRCNLRKVSPFVVELCKKHNLPYNIVSFWKSNAMTVETLQAAALQARDLSRPVPRNLVWEAVNT**
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MVDSKKHISQQDLKGHNKPGDLWISVQGKVYNVTDWTKHHPGGDLPLLSLAGQDVTDAFVAYHPGAAWQYLDKFFTGYYLEDYTVSEASKDYRKLVAEFSKMGLFEKKGHCALYTFVFMAMLFAVSIYGVFCSDSTWVHLCSGGLMGLLWIQSGWIGHDSGHYQVMSSRGINRIVQVLTGNCLAGISIAWWKRNHNAHHIACNSLDFDPDLQHMPFFVVSSKFFNSITSCYYERKLHFDSVARFLVSYQHWTFYPVMCLARINLFAQSFLLLLSKKNVPNRVQEIFGILVFWIWYPLLISCLPNWGERVMFIVASFSVTGIQHVQFCLNHFSSNVYVGPPCSNDWFRKQTQGTLNIKCSSWMDWFHGGLQFQVEHHLFPRLPRCNLRKVSPFVVELCKKHNLPYNIVSFWKSNAMTVETLQAAALQARDLSRPVPRNLVWEAVNTHG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query447 2.2.26 [Sep-21-2011]
Q43469458 Delta(8)-fatty-acid desat N/A no 1.0 0.975 0.626 0.0
Q9FR82446 Delta(8)-fatty-acid desat N/A no 0.997 1.0 0.637 0.0
Q8NKG9568 Delta(8)-fatty-acid desat N/A no 0.850 0.669 0.340 2e-59
Q6CMK7573 Delta(8)-fatty-acid desat yes no 0.780 0.609 0.343 4e-59
Q8NKG8573 Delta(8)-fatty-acid desat yes no 0.780 0.609 0.329 2e-57
Q9SWQ9419 Delta(8)-fatty-acid desat N/A no 0.800 0.854 0.3 3e-38
A4UVI1444 Fatty acid desaturase 1 O N/A no 0.841 0.846 0.281 1e-37
A4FV48444 Fatty acid desaturase 2 O no no 0.838 0.844 0.279 5e-37
O60427501 Fatty acid desaturase 1 O yes no 0.847 0.756 0.281 5e-37
Q9DEX7444 Fatty acid desaturase 2 O yes no 0.879 0.885 0.270 6e-37
>sp|Q43469|SLD1_HELAN Delta(8)-fatty-acid desaturase OS=Helianthus annuus GN=sld1 PE=1 SV=1 Back     alignment and function desciption
 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 280/447 (62%), Positives = 361/447 (80%)

Query: 1   MVDSKKHISQQDLKGHNKPGDLWISVQGKVYNVTDWTKHHPGGDLPLLSLAGQDVTDAFV 60
           + D KK+I+ ++LK HN P DLWIS+ GKVYNVT+W K HPGGD PL++LAGQDVTDAF+
Sbjct: 12  IADGKKYITSKELKKHNNPNDLWISILGKVYNVTEWAKEHPGGDAPLINLAGQDVTDAFI 71

Query: 61  AYHPGAAWQYLDKFFTGYYLEDYTVSEASKDYRKLVAEFSKMGLFEKKGHCALYTFVFMA 120
           A+HPG AW++LDK FTGY+L+DY VS+ S+DYRKL +EF+K G+FEKKGH  +Y+  F++
Sbjct: 72  AFHPGTAWKHLDKLFTGYHLKDYQVSDISRDYRKLASEFAKAGMFEKKGHGVIYSLCFVS 131

Query: 121 MLFAVSIYGVFCSDSTWVHLCSGGLMGLLWIQSGWIGHDSGHYQVMSSRGINRIVQVLTG 180
           +L +  +YGV  S S W+H+ SG ++GL W+Q  ++GHD+GHYQ+M++RG N+   +  G
Sbjct: 132 LLLSACVYGVLYSGSFWIHMLSGAILGLAWMQIAYLGHDAGHYQMMATRGWNKFAGIFIG 191

Query: 181 NCLAGISIAWWKRNHNAHHIACNSLDFDPDLQHMPFFVVSSKFFNSITSCYYERKLHFDS 240
           NC+ GISIAWWK  HNAHHIACNSLD+DPDLQH+P   VSSK FNSITS +Y R+L FD 
Sbjct: 192 NCITGISIAWWKWTHNAHHIACNSLDYDPDLQHLPMLAVSSKLFNSITSVFYGRQLTFDP 251

Query: 241 VARFLVSYQHWTFYPVMCLARINLFAQSFLLLLSKKNVPNRVQEIFGILVFWIWYPLLIS 300
           +ARF VSYQH+ +YP+MC+AR+NL+ Q+ LLL+SK+ +P+R   I G L+FW W+PLL+S
Sbjct: 252 LARFFVSYQHYLYYPIMCVARVNLYLQTILLLISKRKIPDRGLNILGTLIFWTWFPLLVS 311

Query: 301 CLPNWGERVMFIVASFSVTGIQHVQFCLNHFSSNVYVGPPCSNDWFRKQTQGTLNIKCSS 360
            LPNW ERV F++ SF VTGIQH+QF LNHFS +VYVGPP  ++WF KQT+GT++I CSS
Sbjct: 312 RLPNWPERVAFVLVSFCVTGIQHIQFTLNHFSGDVYVGPPKGDNWFEKQTRGTIDIACSS 371

Query: 361 WMDWFHGGLQFQVEHHLFPRLPRCNLRKVSPFVVELCKKHNLPYNIVSFWKSNAMTVETL 420
           WMDWF GGLQFQ+EHHLFPRLPRC+LR +SP   ELCKK+NLPY  +SF+ +N  T++TL
Sbjct: 372 WMDWFFGGLQFQLEHHLFPRLPRCHLRSISPICRELCKKYNLPYVSLSFYDANVTTLKTL 431

Query: 421 QAAALQARDLSRPVPRNLVWEAVNTHG 447
           + AALQARDL+ P P+NL WEA NTHG
Sbjct: 432 RTAALQARDLTNPAPQNLAWEAFNTHG 458
Delta(8)-fatty-acid desaturase which introduces a double bond at the 8-position in 20-carbon fatty acids that have an existing delta-11 unsaturation. Involved in the biosynthesis of sphingolipids. In addition to their role as membrane components, sphingolipids act as secondary messengers by controlling metabolism and cell growth.
Helianthus annuus (taxid: 4232)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 9EC: .EC: 4
>sp|Q9FR82|SLD1_BOROF Delta(8)-fatty-acid desaturase OS=Borago officinalis GN=sld1 PE=1 SV=1 Back     alignment and function description
>sp|Q8NKG9|SLD1_LACK1 Delta(8)-fatty-acid desaturase OS=Lachancea kluyveri (strain ATCC 58438 / CBS 3082 / CCRC 21498 / NBRC 1685 / JCM 7257 / NCYC 543 / NRRL Y-12651) GN=SLD PE=1 SV=1 Back     alignment and function description
>sp|Q6CMK7|SLD1_KLULA Delta(8)-fatty-acid desaturase OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SLD PE=3 SV=1 Back     alignment and function description
>sp|Q8NKG8|SLD1_KLULC Delta(8)-fatty-acid desaturase OS=Kluyveromyces lactis GN=SLD PE=1 SV=1 Back     alignment and function description
>sp|Q9SWQ9|SLD1_EUGGR Delta(8)-fatty-acid desaturase OS=Euglena gracilis GN=efd1 PE=1 SV=1 Back     alignment and function description
>sp|A4UVI1|FADS1_PAPAN Fatty acid desaturase 1 OS=Papio anubis GN=FADS1 PE=2 SV=1 Back     alignment and function description
>sp|A4FV48|FADS2_BOVIN Fatty acid desaturase 2 OS=Bos taurus GN=FADS2 PE=2 SV=1 Back     alignment and function description
>sp|O60427|FADS1_HUMAN Fatty acid desaturase 1 OS=Homo sapiens GN=FADS1 PE=1 SV=2 Back     alignment and function description
>sp|Q9DEX7|FADS2_DANRE Fatty acid desaturase 2 OS=Danio rerio GN=fads2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query447
255550764447 fatty acid desaturase, putative [Ricinus 1.0 1.0 0.794 0.0
144583293447 D8-sphingolipid desaturase [Jatropha cur 1.0 1.0 0.805 0.0
129593742447 sphingolipid delta-8 desaturase [Nicotia 1.0 1.0 0.774 0.0
224088826448 predicted protein [Populus trichocarpa] 1.0 0.997 0.772 0.0
4101626446 desaturase/cytochrome b5 protein [Ricinu 0.997 1.0 0.778 0.0
289552249448 delta-6-desaturase [Camellia oleifera] 0.993 0.991 0.779 0.0
37727301448 delta-6-desaturase [Camellia sinensis] 0.993 0.991 0.765 0.0
225429536447 PREDICTED: fatty acid desaturase 3 [Viti 1.0 1.0 0.756 0.0
171673207447 delta6-fatty acid desaturase [Oenothera 1.0 1.0 0.749 0.0
418204468450 fatty acid desaturase 2a [Musa AB Group] 0.993 0.986 0.714 0.0
>gi|255550764|ref|XP_002516430.1| fatty acid desaturase, putative [Ricinus communis] gi|223544250|gb|EEF45771.1| fatty acid desaturase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  771 bits (1991), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/447 (79%), Positives = 397/447 (88%)

Query: 1   MVDSKKHISQQDLKGHNKPGDLWISVQGKVYNVTDWTKHHPGGDLPLLSLAGQDVTDAFV 60
           M ++KK+I+++DL+ HN PGDLWIS+QGK+YNVTDW+K HPGG  PLL LAGQDVTDAFV
Sbjct: 1   MAETKKYITKEDLEKHNNPGDLWISIQGKIYNVTDWSKDHPGGVSPLLHLAGQDVTDAFV 60

Query: 61  AYHPGAAWQYLDKFFTGYYLEDYTVSEASKDYRKLVAEFSKMGLFEKKGHCALYTFVFMA 120
           AYHPG AWQYLDKFFTGY+L+DY+VSE SKDYR+LVAEFSK+GLFEKKGH A  T V M 
Sbjct: 61  AYHPGTAWQYLDKFFTGYHLKDYSVSETSKDYRRLVAEFSKLGLFEKKGHIAFITLVSMV 120

Query: 121 MLFAVSIYGVFCSDSTWVHLCSGGLMGLLWIQSGWIGHDSGHYQVMSSRGINRIVQVLTG 180
           ML A+S+YGV CS+STWVHL SGGLMG +WIQSGWIGHDSGHYQVM SR  NR+ Q+L+G
Sbjct: 121 MLLALSVYGVLCSNSTWVHLISGGLMGFMWIQSGWIGHDSGHYQVMMSRRFNRLAQILSG 180

Query: 181 NCLAGISIAWWKRNHNAHHIACNSLDFDPDLQHMPFFVVSSKFFNSITSCYYERKLHFDS 240
           NCLAGISIAWWK NHN HHIACNSLDFDPDLQHMPFF VSSKFF+SITS +YERK++FD 
Sbjct: 181 NCLAGISIAWWKWNHNTHHIACNSLDFDPDLQHMPFFAVSSKFFSSITSYFYERKMNFDC 240

Query: 241 VARFLVSYQHWTFYPVMCLARINLFAQSFLLLLSKKNVPNRVQEIFGILVFWIWYPLLIS 300
            ARFLVSYQH TFYPVMC ARINLFAQS  LLLSK+ V NR QEI G+LVFWIWYP L+S
Sbjct: 241 AARFLVSYQHLTFYPVMCFARINLFAQSISLLLSKRRVANRGQEILGVLVFWIWYPFLVS 300

Query: 301 CLPNWGERVMFIVASFSVTGIQHVQFCLNHFSSNVYVGPPCSNDWFRKQTQGTLNIKCSS 360
           CLPNWGERVMF+VASFSVTGIQHVQFCLNHFSS+VY+GPP +NDWF  QT+GTLNI CSS
Sbjct: 301 CLPNWGERVMFVVASFSVTGIQHVQFCLNHFSSSVYLGPPSANDWFENQTKGTLNITCSS 360

Query: 361 WMDWFHGGLQFQVEHHLFPRLPRCNLRKVSPFVVELCKKHNLPYNIVSFWKSNAMTVETL 420
           WMDWFHGGLQFQ+EHHLFPRLPRC LRKVSPFV ELCKKHNLPY+  SFW +N +T +TL
Sbjct: 361 WMDWFHGGLQFQIEHHLFPRLPRCQLRKVSPFVRELCKKHNLPYDSASFWNANELTFKTL 420

Query: 421 QAAALQARDLSRPVPRNLVWEAVNTHG 447
           +AAALQARDLS P+P+NLVWEAVNTHG
Sbjct: 421 RAAALQARDLSNPIPKNLVWEAVNTHG 447

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|144583293|gb|ABP01349.1| D8-sphingolipid desaturase [Jatropha curcas] Back     alignment and taxonomy information
>gi|129593742|gb|ABO31111.1| sphingolipid delta-8 desaturase [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|224088826|ref|XP_002308556.1| predicted protein [Populus trichocarpa] gi|222854532|gb|EEE92079.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|4101626|gb|AAD01240.1| desaturase/cytochrome b5 protein [Ricinus communis] Back     alignment and taxonomy information
>gi|289552249|gb|ADD10720.1| delta-6-desaturase [Camellia oleifera] Back     alignment and taxonomy information
>gi|37727301|gb|AAO13090.1| delta-6-desaturase [Camellia sinensis] Back     alignment and taxonomy information
>gi|225429536|ref|XP_002279189.1| PREDICTED: fatty acid desaturase 3 [Vitis vinifera] Back     alignment and taxonomy information
>gi|171673207|gb|ACB47482.1| delta6-fatty acid desaturase [Oenothera biennis] Back     alignment and taxonomy information
>gi|418204468|gb|AFX61788.1| fatty acid desaturase 2a [Musa AB Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query447
TAIR|locus:2062928449 SLD2 "sphingoid LCB desaturase 0.991 0.986 0.659 2e-175
TAIR|locus:2082792449 SLD1 "sphingoid LCB desaturase 0.991 0.986 0.647 4.3e-173
ASPGD|ASPL0000078156545 AN4592 [Emericella nidulans (t 0.765 0.627 0.355 6e-70
CGD|CAL0004027584 SLD1 [Candida albicans (taxid: 0.742 0.568 0.345 3.3e-65
UNIPROTKB|Q5AEK8584 CaO19.260 "Potential delta(6)- 0.742 0.568 0.345 3.3e-65
WB|WBGene00001395443 fat-3 [Caenorhabditis elegans 0.749 0.756 0.315 2.9e-44
UNIPROTKB|F1N8E1400 F1N8E1 "Uncharacterized protei 0.816 0.912 0.305 3.1e-44
UNIPROTKB|K7N7E5441 FADS1 "Uncharacterized protein 0.847 0.859 0.304 5.2e-42
UNIPROTKB|E1BMB7485 LOC615051 "Uncharacterized pro 0.847 0.781 0.293 1.7e-41
WB|WBGene00001396447 fat-4 [Caenorhabditis elegans 0.744 0.744 0.283 2e-41
TAIR|locus:2062928 SLD2 "sphingoid LCB desaturase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1704 (604.9 bits), Expect = 2.0e-175, P = 2.0e-175
 Identities = 292/443 (65%), Positives = 360/443 (81%)

Query:     5 KKHISQQDLKGHNKPGDLWISVQGKVYNVTDWTKHHPGGDLPLLSLAGQDVTDAFVAYHP 64
             K++++ +DLK HNKPGDLWIS+QGKVY+V+DW K HPGG+  +L+LAGQDVTDAF+AYHP
Sbjct:     7 KRYVTSEDLKKHNKPGDLWISIQGKVYDVSDWVKSHPGGEAAILNLAGQDVTDAFIAYHP 66

Query:    65 GAAWQYLDKFFTGYYLEDYTVSEASKDYRKLVAEFSKMGLFEKKGHCALYTFVFMAMLFA 124
             G AW +L+K   GY++ D+ VS+ S+DYR+L AEFSK GLF+KKGH  LYT   + ++ A
Sbjct:    67 GTAWHHLEKLHNGYHVRDHHVSDVSRDYRRLAAEFSKRGLFDKKGHVTLYTLTCVGVMLA 126

Query:   125 VSIYGVFCSDSTWVHLCSGGLMGLLWIQSGWIGHDSGHYQVMSSRGINRIVQVLTGNCLA 184
               +YGV    S W HL S  L+GLLWIQS ++GHDSGHY V S++  N+++Q+L+GNCL 
Sbjct:   127 AVLYGVLACTSIWAHLISAVLLGLLWIQSAYVGHDSGHYTVTSTKPCNKLIQLLSGNCLT 186

Query:   185 GISIAWWKRNHNAHHIACNSLDFDPDLQHMPFFVVSSKFFNSITSCYYERKLHFDSVARF 244
             GISIAWWK  HNAHHIACNSLD DPDLQH+P F VS+KFFNS+TS +Y RKL FD +ARF
Sbjct:   187 GISIAWWKWTHNAHHIACNSLDHDPDLQHIPIFAVSTKFFNSMTSRFYGRKLTFDPLARF 246

Query:   245 LVSYQHWTFYPVMCLARINLFAQSFLLLLSKKNVPNRVQEIFGILVFWIWYPLLISCLPN 304
             L+SYQHWTFYPVMC+ RINLF Q+FLLL SK++VP+R   I GILVFW W+PLL+S LPN
Sbjct:   247 LISYQHWTFYPVMCVGRINLFIQTFLLLFSKRHVPDRALNIAGILVFWTWFPLLVSFLPN 306

Query:   305 WGERVMFIVASFSVTGIQHVQFCLNHFSSNVYVGPPCSNDWFRKQTQGTLNIKCSSWMDW 364
             W ER +F+  SF+VT IQHVQFCLNHF+++VY GPP  NDWF KQT GTL+I C S+MDW
Sbjct:   307 WQERFIFVFVSFAVTAIQHVQFCLNHFAADVYTGPPNGNDWFEKQTAGTLDISCRSFMDW 366

Query:   365 FHGGLQFQVEHHLFPRLPRCNLRKVSPFVVELCKKHNLPYNIVSFWKSNAMTVETLQAAA 424
             F GGLQFQ+EHHLFPRLPRC+LR VSP V ELCKKHNLPY  +S+W++N  T+ TL+ AA
Sbjct:   367 FFGGLQFQLEHHLFPRLPRCHLRTVSPVVKELCKKHNLPYRSLSWWEANVWTIRTLKNAA 426

Query:   425 LQARDLSRPVPRNLVWEAVNTHG 447
             +QARD + PV +NL+WEAVNTHG
Sbjct:   427 IQARDATNPVLKNLLWEAVNTHG 449
GO:0005506 "iron ion binding" evidence=IEA
GO:0006629 "lipid metabolic process" evidence=IEA
GO:0006633 "fatty acid biosynthetic process" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=ISS
GO:0016717 "oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water" evidence=IEA
GO:0020037 "heme binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2082792 SLD1 "sphingoid LCB desaturase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000078156 AN4592 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
CGD|CAL0004027 SLD1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5AEK8 CaO19.260 "Potential delta(6)-or delta(8)-desaturase" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
WB|WBGene00001395 fat-3 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|F1N8E1 F1N8E1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|K7N7E5 FADS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1BMB7 LOC615051 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
WB|WBGene00001396 fat-4 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FR82SLD1_BOROF1, ., 1, 4, ., 1, 9, ., 40.63750.99771.0N/Ano
Q43469SLD1_HELAN1, ., 1, 4, ., 1, 9, ., 40.62631.00.9759N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.190.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query447
PLN03199485 PLN03199, PLN03199, delta6-acyl-lipid desaturase-l 5e-65
PLN03198526 PLN03198, PLN03198, delta6-acyl-lipid desaturase; 9e-65
cd03506204 cd03506, Delta6-FADS-like, The Delta6 Fatty Acid D 2e-64
pfam0017374 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid 1e-25
pfam00487251 pfam00487, FA_desaturase, Fatty acid desaturase 2e-22
PLN02252888 PLN02252, PLN02252, nitrate reductase [NADPH] 4e-13
COG5274164 COG5274, CYB5, Cytochrome b involved in lipid meta 1e-11
COG3239343 COG3239, DesA, Fatty acid desaturase [Lipid metabo 4e-10
cd01060122 cd01060, Membrane-FADS-like, The membrane fatty ac 8e-10
cd03507222 cd03507, Delta12-FADS-like, The Delta12 Fatty Acid 1e-04
>gnl|CDD|178740 PLN03199, PLN03199, delta6-acyl-lipid desaturase-like protein; Provisional Back     alignment and domain information 
 Score =  216 bits (551), Expect = 5e-65
 Identities = 141/456 (30%), Positives = 212/456 (46%), Gaps = 44/456 (9%)

Query: 1   MVDSKKHISQQDLKGHNKPGDLWISVQGKVYNVTDWTKHHPGGDLPLLSLAGQDVTDAFV 60
           + +  + IS Q++K H  P D WI  Q KVY+V++W  H PGG + + + AG D+TD F 
Sbjct: 19  LAEKPQKISWQEVKKHASPDDAWIIHQNKVYDVSNWHDH-PGGAV-IFTHAGDDMTDIFA 76

Query: 61  AYHPGAAWQYLDKFFTGYYLEDYTVSEA------SKDYRKLVAEFSKMGLFEKKGHCALY 114
           A+H   +   + KF+ G  + + T  +        K YR L A+   MG+F+       Y
Sbjct: 77  AFHAPGSQALMKKFYIGDLIPESTEHKDPQQIAFEKGYRDLRAKLIMMGMFKSNKMFYAY 136

Query: 115 TFVFMAMLFAVSIYGVFCSDSTWVHLCSGGLMGLLWIQSGWIGHDSGHYQVMSSRGINRI 174
             +F   ++A +   VF SD   +H+ S  L+GL + Q GW+ HD  H+QV   R    +
Sbjct: 137 KCLFNMAIWAAACALVFYSDRFAMHIASALLLGLFFQQCGWLAHDFLHHQVFKKRKHGDL 196

Query: 175 VQVLTGNCLAGISIAWWKRNHNAHH----IACNSL---DFDPDLQHMPFFVVSSKFFNSI 227
             +  G+ + G S+ WWK  HN HH    + C+S    D DPD+  MP    S K   S 
Sbjct: 197 GGIFWGDLMQGFSMQWWKNKHNGHHAVPNLHCSSADAQDGDPDIDTMPLLAWSLKQAQSF 256

Query: 228 TSCYYERKLHFDS-VARFLVSYQHWTFYPVMCLARINLFAQSF-------------LLLL 273
                + K   DS   +F + +Q + ++P++ LARI+   +SF              L L
Sbjct: 257 REINADGK---DSGFVKFAIKFQAFFYFPILLLARISWLNESFKCAFGLGAASENAALEL 313

Query: 274 SKKNVPNRVQEIFGILVFWIWYPLLISCLPNWG---ERVMFIVASFSVTGIQHVQFCLNH 330
             K +   + E  GIL+ + W   L S    +        F  A+ S      + F L H
Sbjct: 314 EAKGLQYPLLEKAGILLHYAWMFTLSSGFGRFSFAYSAFYFFTATASCGFFLAIVFGLGH 373

Query: 331 FSSNVYVGPPCSNDWFRKQTQGTLNIKC-----SSWMDWFHGGLQFQVEHHLFPRLPRCN 385
                Y       D+++ Q   T NI        +++DWF GGLQ+QV+HHLFP LPR N
Sbjct: 374 NGMATY-DADARPDFWKLQVTTTRNIIGGHGFPQAFVDWFCGGLQYQVDHHLFPMLPRHN 432

Query: 386 LRKVSPFVVELCKKHNLPYNIVSFWKSNAMTVETLQ 421
           + K    V   CK+  + Y+          T+E L 
Sbjct: 433 IAKCHALVESFCKEWGVKYHEADLVDG---TMEVLH 465

Length = 485
>gnl|CDD|178739 PLN03198, PLN03198, delta6-acyl-lipid desaturase; Provisional Back     alignment and domain information
>gnl|CDD|239583 cd03506, Delta6-FADS-like, The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria Back     alignment and domain information
>gnl|CDD|201057 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid binding domain Back     alignment and domain information
>gnl|CDD|215943 pfam00487, FA_desaturase, Fatty acid desaturase Back     alignment and domain information
>gnl|CDD|215141 PLN02252, PLN02252, nitrate reductase [NADPH] Back     alignment and domain information
>gnl|CDD|227599 COG5274, CYB5, Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism] Back     alignment and domain information
>gnl|CDD|225779 COG3239, DesA, Fatty acid desaturase [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|238511 cd01060, Membrane-FADS-like, The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane hydroxylases, beta carotene ketolases (CrtW-like), hydroxylases (CrtR-like), and other related proteins Back     alignment and domain information
>gnl|CDD|239584 cd03507, Delta12-FADS-like, The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane enzymes, delta-12 acyl-lipid desaturases, oleate 12-hydroxylases, omega3 and omega6 fatty acid desaturases, and other related proteins, found in a wide range of organisms including higher plants, green algae, diatoms, nematodes, fungi, and bacteria Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 447
PLN03199485 delta6-acyl-lipid desaturase-like protein; Provisi 100.0
PLN03198526 delta6-acyl-lipid desaturase; Provisional 100.0
KOG4232430 consensus Delta 6-fatty acid desaturase/delta-8 sp 100.0
cd03506204 Delta6-FADS-like The Delta6 Fatty Acid Desaturase 100.0
PLN02598421 omega-6 fatty acid desaturase 100.0
PLN02498450 omega-3 fatty acid desaturase 100.0
PLN02505381 omega-6 fatty acid desaturase 100.0
COG3239343 DesA Fatty acid desaturase [Lipid metabolism] 100.0
cd03507222 Delta12-FADS-like The Delta12 Fatty Acid Desaturas 100.0
cd03511285 Rhizopine-oxygenase-like This CD includes the puta 100.0
PF00487257 FA_desaturase: Fatty acid desaturase This entry is 100.0
PLN02579323 sphingolipid delta-4 desaturase 100.0
cd03508289 Delta4-sphingolipid-FADS-like The Delta4-sphingoli 100.0
cd03514207 CrtR_beta-carotene-hydroxylase Beta-carotene hydro 100.0
cd03509288 DesA_FADS-like Fatty acid desaturase protein famil 99.97
cd03510175 Rhizobitoxine-FADS-like This CD includes the dihyd 99.97
cd03513225 CrtW_beta-carotene-ketolase Beta-carotene ketolase 99.96
KOG2987324 consensus Fatty acid desaturase [Lipid transport a 99.92
KOG0537124 consensus Cytochrome b5 [Energy production and con 99.89
cd03512314 Alkane-hydroxylase Alkane hydroxylase is a bacteri 99.81
PF0017376 Cyt-b5: Cytochrome b5-like Heme/Steroid binding do 99.8
KOG0536145 consensus Flavohemoprotein b5+b5R [Energy producti 99.79
cd01060122 Membrane-FADS-like The membrane fatty acid desatur 99.75
COG5274164 CYB5 Cytochrome b involved in lipid metabolism [En 99.61
PLN02252888 nitrate reductase [NADPH] 99.6
KOG4576167 consensus Sulfite oxidase, heme-binding component 99.31
COG489281 Predicted heme/steroid binding protein [General fu 98.8
KOG1600321 consensus Fatty acid desaturase [Lipid transport a 98.78
COG1398289 OLE1 Fatty-acid desaturase [Lipid metabolism] 98.75
PLN02220299 delta-9 acyl-lipid desaturase 98.56
KOG1110183 consensus Putative steroid membrane receptor Hpr6. 97.82
cd03505178 Delta9-FADS-like The Delta9 Fatty Acid Desaturase 97.58
KOG1108281 consensus Predicted heme/steroid binding protein [ 96.55
PF1490194 Jiv90: Cleavage inducing molecular chaperone 83.42
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.7e-82  Score=643.49  Aligned_cols=420  Identities=31%  Similarity=0.561  Sum_probs=346.3

Q ss_pred             CCCCCcCHHHHcccCCCCCeEEEEcCeEEecCCCcccccccccccccccCCchhhHHHhcCcHHHHhhhhhccccccccc
Q 013234            3 DSKKHISQQDLKGHNKPGDLWISVQGKVYNVTDWTKHHPGGDLPLLSLAGQDVTDAFVAYHPGAAWQYLDKFFTGYYLED   82 (447)
Q Consensus         3 ~~~~~~~~~e~~~~~~~~~~~v~i~g~vydvt~f~~~hPgg~~~l~~~~g~D~t~~f~~~H~~~~~~~l~~~~vg~~~~~   82 (447)
                      ++.+.+|++|+++|+++++|||+|+|+|||||+|. +||||+ .|..++|+|+|++|+++|+..++++|++|+||+..++
T Consensus        21 ~~~~~~s~~ev~~h~~~~~~wi~i~g~vYDvt~f~-~HPGG~-~i~~~aG~DaT~~F~~~H~~~~~~~l~~~~iG~l~~~   98 (485)
T PLN03199         21 EKPQKISWQEVKKHASPDDAWIIHQNKVYDVSNWH-DHPGGA-VIFTHAGDDMTDIFAAFHAPGSQALMKKFYIGDLIPE   98 (485)
T ss_pred             ccCCccCHHHHHhhCCCCCeEEEECCEEEcCCCcC-cCCCch-HHHhhCCCChhHHHHHhcCHHHHHHHHhccccccccc
Confidence            35689999999999999999999999999999997 899998 7889999999999999999999999999999976543


Q ss_pred             cc------ccccchhHHHHHHHHhhcccCccCchhHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhh
Q 013234           83 YT------VSEASKDYRKLVAEFSKMGLFEKKGHCALYTFVFMAMLFAVSIYGVFCSDSTWVHLCSGGLMGLLWIQSGWI  156 (447)
Q Consensus        83 ~~------~~~~~~~y~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~~~~~~~l  156 (447)
                      ..      ..+.+++|++||++++++|++++++..+..+++.+++++++++++.+...++|+.+++++++|+++.+++++
T Consensus        99 ~~~~~~~~~~~~~~~y~~L~~~v~~~g~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aillg~~~~~~g~l  178 (485)
T PLN03199         99 STEHKDPQQIAFEKGYRDLRAKLIMMGMFKSNKMFYAYKCLFNMAIWAAACALVFYSDRFAMHIASALLLGLFFQQCGWL  178 (485)
T ss_pred             cccccccchHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            22      123467899999999999999999998888888888888888777665667778899999999999999999


Q ss_pred             hccccccccccCchhhhHHHHHHhhhhcCcchhhhhhccccccccCCC-------CCCCCCCCCCCeeeeeccccccccc
Q 013234          157 GHDSGHYQVMSSRGINRIVQVLTGNCLAGISIAWWKRNHNAHHIACNS-------LDFDPDLQHMPFFVVSSKFFNSITS  229 (447)
Q Consensus       157 ~HD~~H~~~~~~~~~N~~~g~~~~~~~~~~s~~~wr~~H~~HH~~tn~-------~~~DpD~~~~p~~~~~~~~~~~~~~  229 (447)
                      +||++|+++++++++|+++|.++++++.|.|..||+.+||.||++||+       .+.|||++..|++++++.+......
T Consensus       179 ~HDa~H~~~~~~~~~N~~~g~~~g~l~~G~S~~wW~~~Hn~HH~~tN~~~~~~~~~~~DPDI~~~p~l~~~~~~~~~~~~  258 (485)
T PLN03199        179 AHDFLHHQVFKKRKHGDLGGIFWGDLMQGFSMQWWKNKHNGHHAVPNLHCSSADAQDGDPDIDTMPLLAWSLKQAQSFRE  258 (485)
T ss_pred             HHhhhhhhhhCCchHHHHHHHHHHHhccCCChHHHHHHHhhhhcCcCcCccccCCCCCCCCCCCCceeeecHHHhhhHhh
Confidence            999999999999999999998887788899999999999999999997       4789999988999888765432211


Q ss_pred             hhhhhhcchhhHHhHHHhccchhHHHHHHHHHHHHHHHHHHHHHhcC-------------CCCchHHHHHHHHHHHHHHH
Q 013234          230 CYYERKLHFDSVARFLVSYQHWTFYPVMCLARINLFAQSFLLLLSKK-------------NVPNRVQEIFGILVFWIWYP  296 (447)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~  296 (447)
                      ...  .+..+...+++.++|+++++|++.+.+++|...++...+...             ....+..+++..++++++..
T Consensus       259 ~~~--~~~~~~~~~~~~~~Qh~~~~p~l~l~~l~w~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  336 (485)
T PLN03199        259 INA--DGKDSGFVKFAIKFQAFFYFPILLLARISWLNESFKCAFGLGAASENAALELEAKGLQYPLLEKAGILLHYAWMF  336 (485)
T ss_pred             hhh--hccccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhHHHHHHHHHHHHHHHHHH
Confidence            111  122344557899999999999998889999888876555311             01122345556666665544


Q ss_pred             HHhhcCC--chhHHHHHHHHHHHhhh-heeeeeeccCcccccccCCCCCCcHHHHhHhcccccCC-----Ccchhhhhcc
Q 013234          297 LLISCLP--NWGERVMFIVASFSVTG-IQHVQFCLNHFSSNVYVGPPCSNDWFRKQTQGTLNIKC-----SSWMDWFHGG  368 (447)
Q Consensus       297 ~~~~~~~--~~~~~~~~~~~~~~~~~-~l~~~~~~~H~~~~~~~~~~~~~~w~~~ql~~s~~~~~-----~~~~~~l~~g  368 (447)
                      .+...++  .+...+.++++..++++ +++++|.++|..++.... +...||.+.|++||+|+++     ++|++||+||
T Consensus       337 ~lp~~~~~~~~~~~l~~~~~~~~~~g~~l~~~f~l~H~~~~~~~~-~~~~d~~~~Qv~TT~n~~~~~~~~s~~~~wf~GG  415 (485)
T PLN03199        337 TLSSGFGRFSFAYSAFYFFTATASCGFFLAIVFGLGHNGMATYDA-DARPDFWKLQVTTTRNIIGGHGFPQAFVDWFCGG  415 (485)
T ss_pred             HHHHHhccccHHHHHHHHHHHHHHHhhHheEEEecCCccccccCC-CCCccHHHHHHHhccCccCCCCCcchHHHHHhcc
Confidence            4332221  12334445555555666 899999999999886533 3456899999999999986     6799999999


Q ss_pred             cccccccccCCCCCCcChhhhhHHHHHHHHHcCCCcccccHHHHHHHHHHHHHHHHhhh
Q 013234          369 LQFQVEHHLFPRLPRCNLRKVSPFVVELCKKHNLPYNIVSFWKSNAMTVETLQAAALQA  427 (447)
Q Consensus       369 lnyHieHHLfP~vP~~~lp~~~~~v~~~~~~~g~~y~~~~~~~~~~~~~~~L~~~~~~~  427 (447)
                      |||||||||||+||++|||+++|+||++|+|+|+||++.++++++++++++|+++|+++
T Consensus       416 LN~QIEHHLFP~mp~~~y~~i~piVk~~C~k~glpY~~~~~~~a~~~~~~~L~~vg~~~  474 (485)
T PLN03199        416 LQYQVDHHLFPMLPRHNIAKCHALVESFCKEWGVKYHEADLVDGTMEVLHHLGKVADDF  474 (485)
T ss_pred             chhhhhhhcCCCCchhhHHhhhHHHHHHHHHhCCCccccCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999864

>PLN03198 delta6-acyl-lipid desaturase; Provisional Back     alignment and domain information
>KOG4232 consensus Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase [Lipid transport and metabolism] Back     alignment and domain information
>cd03506 Delta6-FADS-like The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria Back     alignment and domain information
>PLN02598 omega-6 fatty acid desaturase Back     alignment and domain information
>PLN02498 omega-3 fatty acid desaturase Back     alignment and domain information
>PLN02505 omega-6 fatty acid desaturase Back     alignment and domain information
>COG3239 DesA Fatty acid desaturase [Lipid metabolism] Back     alignment and domain information
>cd03507 Delta12-FADS-like The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane enzymes, delta-12 acyl-lipid desaturases, oleate 12-hydroxylases, omega3 and omega6 fatty acid desaturases, and other related proteins, found in a wide range of organisms including higher plants, green algae, diatoms, nematodes, fungi, and bacteria Back     alignment and domain information
>cd03511 Rhizopine-oxygenase-like This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins Back     alignment and domain information
>PF00487 FA_desaturase: Fatty acid desaturase This entry is only a subset of the Pfam family Back     alignment and domain information
>PLN02579 sphingolipid delta-4 desaturase Back     alignment and domain information
>cd03508 Delta4-sphingolipid-FADS-like The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins Back     alignment and domain information
>cd03514 CrtR_beta-carotene-hydroxylase Beta-carotene hydroxylase (CrtR), the carotenoid zeaxanthin biosynthetic enzyme catalyzes the addition of hydroxyl groups to the beta-ionone rings of beta-carotene to form zeaxanthin and is found in bacteria and red algae Back     alignment and domain information
>cd03509 DesA_FADS-like Fatty acid desaturase protein family subgroup, a delta-12 acyl-lipid desaturase-like, DesA-like, yet uncharacterized subgroup of membrane fatty acid desaturase proteins found in alpha-, beta-, and gamma-proteobacteria Back     alignment and domain information
>cd03510 Rhizobitoxine-FADS-like This CD includes the dihydrorhizobitoxine fatty acid desaturase (RtxC) characterized in Bradyrhizobium japonicum USDA110, and other related proteins Back     alignment and domain information
>cd03513 CrtW_beta-carotene-ketolase Beta-carotene ketolase/oxygenase (CrtW, also known as CrtO), the carotenoid astaxanthin biosynthetic enzyme, initially catalyzes the addition of two keto groups to carbons C4 and C4' of beta-carotene Back     alignment and domain information
>KOG2987 consensus Fatty acid desaturase [Lipid transport and metabolism] Back     alignment and domain information
>KOG0537 consensus Cytochrome b5 [Energy production and conversion] Back     alignment and domain information
>cd03512 Alkane-hydroxylase Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases Back     alignment and domain information
>PF00173 Cyt-b5: Cytochrome b5-like Heme/Steroid binding domain This prints entry is a subset of the Pfam entry; InterPro: IPR001199 Cytochromes b5 are ubiquitous electron transport proteins found in animals, plants and yeasts [] Back     alignment and domain information
>KOG0536 consensus Flavohemoprotein b5+b5R [Energy production and conversion] Back     alignment and domain information
>cd01060 Membrane-FADS-like The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane hydroxylases, beta carotene ketolases (CrtW-like), hydroxylases (CrtR-like), and other related proteins Back     alignment and domain information
>COG5274 CYB5 Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism] Back     alignment and domain information
>PLN02252 nitrate reductase [NADPH] Back     alignment and domain information
>KOG4576 consensus Sulfite oxidase, heme-binding component [Energy production and conversion] Back     alignment and domain information
>COG4892 Predicted heme/steroid binding protein [General function prediction only] Back     alignment and domain information
>KOG1600 consensus Fatty acid desaturase [Lipid transport and metabolism] Back     alignment and domain information
>COG1398 OLE1 Fatty-acid desaturase [Lipid metabolism] Back     alignment and domain information
>PLN02220 delta-9 acyl-lipid desaturase Back     alignment and domain information
>KOG1110 consensus Putative steroid membrane receptor Hpr6 Back     alignment and domain information
>cd03505 Delta9-FADS-like The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi Back     alignment and domain information
>KOG1108 consensus Predicted heme/steroid binding protein [General function prediction only] Back     alignment and domain information
>PF14901 Jiv90: Cleavage inducing molecular chaperone Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query447
3lf5_A88 Structure Of Human Nadh Cytochrome B5 Oxidoreductas 4e-09
3ks0_A95 Crystal Structure Of The Heme Domain Of Flavocytoch 2e-07
1ldc_A511 X-Ray Structure Of Two Complexes Of The Y143f Flavo 5e-07
1ltd_A506 The 2.6 Angstroms Refined Structure Of The Escheric 5e-07
2oz0_A511 Mechanistic And Structural Studies Of H373q Flavocy 5e-07
1fcb_A511 Molecular Structure Of Flavocytochrome B2 At 2.4 An 6e-07
1sze_A511 L230a Mutant Flavocytochrome B2 With Benzoylformate 6e-07
1szf_A511 A198g:l230a Mutant Flavocytochrome B2 With Pyruvate 6e-07
3ozz_B82 Structure Of A Cytochrome B5 Core-Swap Mutant Lengt 3e-06
1x3x_A82 Crystal Structure Of Cytochrome B5 From Ascaris Suu 5e-06
3ner_A92 Structure Of Human Type B Cytochrome B5 Length = 92 1e-05
1b5m_A84 Rat Outer Mitochondrial Membrane Cytochrome B5 Leng 1e-05
3mus_A87 2a Resolution Structure Of Rat Type B Cytochrome B5 1e-05
1eue_A86 Rat Outer Mitochondrial Membrane Cytochrome B5 Leng 2e-05
1awp_A92 Rat Outer Mitochondrial Membrane Cytochrome B5 Leng 3e-05
2m33_A104 Solution Nmr Structure Of Full-length Oxidized Micr 8e-05
1do9_A94 Solution Structure Of Oxidized Microsomal Rabbit Cy 8e-05
2i89_A93 Structure Of Septuple Mutant Of Rat Outer Mitochond 9e-05
1icc_A87 Rat Outer Mitochondrial Membrane Cytochrome B5 Leng 1e-04
1m2m_A82 Crystal Structure Of E44aE48AE56AD60A MUTANT OF Cyt 1e-04
1f03_A82 Solution Structure Of Oxidized Bovine Microsomal Cy 1e-04
1lqx_A82 Crystal Structure Of V45e Mutant Of Cytochrome B5 L 2e-04
1m20_A82 Crystal Structure Of F35y Mutant Of Trypsin-Solubil 2e-04
2i96_A108 Solution Structure Of The Oxidized Microsomal Human 2e-04
1cxy_A90 Structure And Characterization Of Ectothiorhodospir 2e-04
1i5u_A82 Solution Structure Of Cytochrome B5 Triple Mutant ( 2e-04
1sh4_A82 Solution Structure Of Oxidized Bovine Microsomal Cy 2e-04
1j0q_A82 Solution Structure Of Oxidized Bovine Microsomal Cy 2e-04
1es1_A82 Crystal Structure Of Val61his Mutant Of Trypsin-Sol 2e-04
1cyo_A93 Bovine Cytochrome B(5) Length = 93 2e-04
1ehb_A82 Crystal Structure Of Recombinant Trypsin-Solubilize 2e-04
1hko_A104 Nmr Structure Of Bovine Cytochrome B5 Length = 104 2e-04
1lr6_A82 Crystal Structure Of V45y Mutant Of Cytochrome B5 L 3e-04
1m2i_A82 Crystal Structure Of E44aE56A MUTANT OF CYTOCHROME 4e-04
1lj0_A92 Structure Of Quintuple Mutant Of The Rat Outer Mito 5e-04
1u9u_A82 Crystal Structure Of F58y Mutant Of Cytochrome B5 L 6e-04
1ib7_A94 Solution Structure Of F35y Mutant Of Rat Ferro Cyto 6e-04
1jex_A94 Solution Structure Of A67v Mutant Of Rat Ferro Cyto 8e-04
1bfx_A99 The Solution Nmr Structure Of The B Form Of Oxidize 8e-04
1blv_A94 Solution Structure Of Oxidized Rat Microsomal Cytoc 8e-04
1aqa_A94 Solution Structure Of Reduced Microsomal Rat Cytoch 8e-04
1i87_A98 Solution Structure Of The Water-Soluble Fragment Of 8e-04
>pdb|3LF5|A Chain A, Structure Of Human Nadh Cytochrome B5 Oxidoreductase (Ncb5or) B5 Domain To 1.25a Resolution Length = 88 Back     alignment and structure 
Iteration: 1

 Score = 59.3 bits (142), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 38/56 (67%)
Query: 8  ISQQDLKGHNKPGDLWISVQGKVYNVTDWTKHHPGGDLPLLSLAGQDVTDAFVAYH 63
          +++++LK HNK  D WI ++G VYNV+ + ++HPGG+  L+  AG D T+ F   H
Sbjct: 8  VTEEELKKHNKKDDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGSDGTELFDQVH 63
>pdb|3KS0|A Chain A, Crystal Structure Of The Heme Domain Of Flavocytochrome B2 In Complex With Fab B2b4 Length = 95 Back     alignment and structure
>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f Flavocytochrome B2 Mutant Crystallized In The Presence Of Lactate Or Phenyl-Lactate Length = 511 Back     alignment and structure
>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia Coli Recombinant Saccharomyces Cerevisiae Flavocytochrome B2-Sulphite Complex Length = 506 Back     alignment and structure
>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q Flavocytochrome B2: Effects Of Mutating The Active Site Base Length = 511 Back     alignment and structure
>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms Resolution Length = 511 Back     alignment and structure
>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate Length = 511 Back     alignment and structure
>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound Length = 511 Back     alignment and structure
>pdb|3OZZ|B Chain B, Structure Of A Cytochrome B5 Core-Swap Mutant Length = 82 Back     alignment and structure
>pdb|1X3X|A Chain A, Crystal Structure Of Cytochrome B5 From Ascaris Suum Length = 82 Back     alignment and structure
>pdb|3NER|A Chain A, Structure Of Human Type B Cytochrome B5 Length = 92 Back     alignment and structure
>pdb|1B5M|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5 Length = 84 Back     alignment and structure
>pdb|3MUS|A Chain A, 2a Resolution Structure Of Rat Type B Cytochrome B5 Length = 87 Back     alignment and structure
>pdb|1EUE|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5 Length = 86 Back     alignment and structure
>pdb|1AWP|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5 Length = 92 Back     alignment and structure
>pdb|2M33|A Chain A, Solution Nmr Structure Of Full-length Oxidized Microsomal Rabbit Cytochrome B5 Length = 104 Back     alignment and structure
>pdb|1DO9|A Chain A, Solution Structure Of Oxidized Microsomal Rabbit Cytochrome B5. Factors Determining The Heterogeneous Binding Of The Heme Length = 94 Back     alignment and structure
>pdb|2I89|A Chain A, Structure Of Septuple Mutant Of Rat Outer Mitochondrial Membrane Cytochrome B5 Length = 93 Back     alignment and structure
>pdb|1ICC|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5 Length = 87 Back     alignment and structure
>pdb|1M2M|A Chain A, Crystal Structure Of E44aE48AE56AD60A MUTANT OF Cytochrome B5 Length = 82 Back     alignment and structure
>pdb|1F03|A Chain A, Solution Structure Of Oxidized Bovine Microsomal Cytochrome B5 Mutant (E44a, E48a, E56a, D60a) And Its Interaction With Cytochrome C Length = 82 Back     alignment and structure
>pdb|1LQX|A Chain A, Crystal Structure Of V45e Mutant Of Cytochrome B5 Length = 82 Back     alignment and structure
>pdb|1M20|A Chain A, Crystal Structure Of F35y Mutant Of Trypsin-Solubilized Fragment Of Cytochrome B5 Length = 82 Back     alignment and structure
>pdb|2I96|A Chain A, Solution Structure Of The Oxidized Microsomal Human Cytochrome B5 Length = 108 Back     alignment and structure
>pdb|1CXY|A Chain A, Structure And Characterization Of Ectothiorhodospira Vacuolata Cytochrome B558, A Prokaryotic Homologue Of Cytochrome B5 Length = 90 Back     alignment and structure
>pdb|1I5U|A Chain A, Solution Structure Of Cytochrome B5 Triple Mutant (E48aE56AD60A) Length = 82 Back     alignment and structure
>pdb|1SH4|A Chain A, Solution Structure Of Oxidized Bovine Microsomal Cytochrome B5 Mutant V45h Length = 82 Back     alignment and structure
>pdb|1J0Q|A Chain A, Solution Structure Of Oxidized Bovine Microsomal Cytochrome B5 Mutant V61h Length = 82 Back     alignment and structure
>pdb|1ES1|A Chain A, Crystal Structure Of Val61his Mutant Of Trypsin-Solubilized Fragment Of Cytochrome B5 Length = 82 Back     alignment and structure
>pdb|1CYO|A Chain A, Bovine Cytochrome B(5) Length = 93 Back     alignment and structure
>pdb|1EHB|A Chain A, Crystal Structure Of Recombinant Trypsin-Solubilized Fragment Of Cytochrome B5 Length = 82 Back     alignment and structure
>pdb|1HKO|A Chain A, Nmr Structure Of Bovine Cytochrome B5 Length = 104 Back     alignment and structure
>pdb|1LR6|A Chain A, Crystal Structure Of V45y Mutant Of Cytochrome B5 Length = 82 Back     alignment and structure
>pdb|1M2I|A Chain A, Crystal Structure Of E44aE56A MUTANT OF CYTOCHROME B5 Length = 82 Back     alignment and structure
>pdb|1LJ0|A Chain A, Structure Of Quintuple Mutant Of The Rat Outer Mitocondrial Cytochrome B5. Length = 92 Back     alignment and structure
>pdb|1U9U|A Chain A, Crystal Structure Of F58y Mutant Of Cytochrome B5 Length = 82 Back     alignment and structure
>pdb|1JEX|A Chain A, Solution Structure Of A67v Mutant Of Rat Ferro Cytochrome B5 Length = 94 Back     alignment and structure
>pdb|1BFX|A Chain A, The Solution Nmr Structure Of The B Form Of Oxidized Rat Microsomal Cytochrome B5, Minimized Average Structure Length = 99 Back     alignment and structure
>pdb|1BLV|A Chain A, Solution Structure Of Oxidized Rat Microsomal Cytochrome B5 In The Presence Of 2 M Guanidinium Chloride: Monitoring The Early Steps In Protein Unfolding Length = 94 Back     alignment and structure
>pdb|1AQA|A Chain A, Solution Structure Of Reduced Microsomal Rat Cytochrome B5, Nmr, Minimized Average Structure Length = 94 Back     alignment and structure
>pdb|1I87|A Chain A, Solution Structure Of The Water-Soluble Fragment Of Rat Hepatic Apocytochrome B5 Length = 98 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query447
1hko_A104 Cytochrome B5; electron transfer protein, heme, el 2e-28
3lf5_A88 Cytochrome B5 reductase 4; NCB5OR, electron transf 7e-27
3ner_A92 Cytochrome B5 type B; heme, electron transport; HE 1e-26
2keo_A112 Probable E3 ubiquitin-protein ligase HERC2; protei 4e-26
1cxy_A90 Cytochrome B5; helix, beta-strand, electron transp 7e-26
1cyo_A93 Cytochrome B5; electron transport; HET: HEM; 1.50A 9e-26
2ibj_A88 Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY dif 5e-25
1x3x_A82 Cytochrome B5; hemoprotein, porcine parasitic nama 9e-24
1mj4_A82 Sulfite oxidase; cytochrome B5, heme, oxidoreducta 7e-18
1kbi_A511 Cytochrome B2, L-LCR; flavocytochrome B2, electron 1e-15
1sox_A466 Sulfite oxidase; oxidoreductase, sulfite oxidation 5e-07
>1hko_A Cytochrome B5; electron transfer protein, heme, electron transport; HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1 PDB: 2i96_A* Length = 104 Back     alignment and structure
 Score =  107 bits (268), Expect = 2e-28
 Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 2/98 (2%)

Query: 4   SKKHISQQDLKGHNKPGDLWISVQGKVYNVTDWTKHHPGGDLPLLSLAGQDVTDAFVAY- 62
           + K+ + ++++ HN     W+ +  KVY++T + + HPGG+  L   AG D T+ F    
Sbjct: 7   AVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVG 66

Query: 63  HPGAAWQYLDKFFTGYYLEDYTVSEASKDYRKLVAEFS 100
           H   A +    F  G  L     S+ +K    ++    
Sbjct: 67  HSTDARELSKTFIIG-ELHPDDRSKITKPSESIITTID 103
>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox, heme, endoplasmic reticulu flavoprotein, iron, metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A {Homo sapiens} Length = 88 Back     alignment and structure
>3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A {Homo sapiens} PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A* 1icc_A* 1lj0_A* 2i89_A* Length = 92 Back     alignment and structure
>2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown function, HERC2 cytochrome domain, ligase binding, phosphoprotein; NMR {Homo sapiens} Length = 112 Back     alignment and structure
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM; 1.65A {Ectothiorhodospira shaposhnikovii} SCOP: d.120.1.1 Length = 90 Back     alignment and structure
>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus} SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A 1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A* 1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A* 1u9u_A* 1m20_A* ... Length = 93 Back     alignment and structure
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme, electron transport; HET: HEM; 1.55A {Musca domestica} Length = 88 Back     alignment and structure
>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron transport; HET: HEM; 1.80A {Ascaris suum} Length = 82 Back     alignment and structure
>1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM; 1.20A {Homo sapiens} SCOP: d.120.1.1 Length = 82 Back     alignment and structure
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* Length = 511 Back     alignment and structure
>1sox_A Sulfite oxidase; oxidoreductase, sulfite oxidation; HET: MTE HEM EPE; 1.90A {Gallus gallus} SCOP: b.1.18.6 d.120.1.1 d.176.1.1 PDB: 3hc2_A* 3hbq_A* 3hbg_A* 3hbp_A* 3r18_A* 3r19_A* Length = 466 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query447
3ner_A92 Cytochrome B5 type B; heme, electron transport; HE 99.89
1cyo_A93 Cytochrome B5; electron transport; HET: HEM; 1.50A 99.89
3lf5_A88 Cytochrome B5 reductase 4; NCB5OR, electron transf 99.89
1cxy_A90 Cytochrome B5; helix, beta-strand, electron transp 99.88
2ibj_A88 Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY dif 99.88
1hko_A104 Cytochrome B5; electron transfer protein, heme, el 99.87
2keo_A112 Probable E3 ubiquitin-protein ligase HERC2; protei 99.87
1mj4_A82 Sulfite oxidase; cytochrome B5, heme, oxidoreducta 99.86
1x3x_A82 Cytochrome B5; hemoprotein, porcine parasitic nama 99.86
1sox_A466 Sulfite oxidase; oxidoreductase, sulfite oxidation 99.65
1kbi_A511 Cytochrome B2, L-LCR; flavocytochrome B2, electron 99.64
1j03_A102 Putative steroid binding protein; alpha and beta, 99.53
>3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A {Homo sapiens} SCOP: d.120.1.1 PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A* 1icc_A* 1lj0_A* 2i89_A* Back     alignment and structure
Probab=99.89  E-value=5.1e-24  Score=165.07  Aligned_cols=80  Identities=29%  Similarity=0.567  Sum_probs=74.7

Q ss_pred             CCCCCcCHHHHcccCCCCCeEEEEcCeEEecCCCcccccccccccccccCCchhhHHHh-cCcHHHHhhhhhcccccccc
Q 013234            3 DSKKHISQQDLKGHNKPGDLWISVQGKVYNVTDWTKHHPGGDLPLLSLAGQDVTDAFVA-YHPGAAWQYLDKFFTGYYLE   81 (447)
Q Consensus         3 ~~~~~~~~~e~~~~~~~~~~~v~i~g~vydvt~f~~~hPgg~~~l~~~~g~D~t~~f~~-~H~~~~~~~l~~~~vg~~~~   81 (447)
                      +..+.||++||++||++++|||+|+|+|||||+|++.||||...|..++|+|+|+.|+. .|+..|+++|++|+||++.+
T Consensus         7 ~~~~~~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~l~~~aG~DaT~~F~~~~Hs~~a~~~L~~~~IG~l~~   86 (92)
T 3ner_A            7 TSVTYYRLEEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHSSDAREMLKQYYIGDIHP   86 (92)
T ss_dssp             CCSCEECHHHHTTCEETTEEEEEETTEEEECGGGTTTCTTCSHHHHTTTTSBCHHHHHHTTCCHHHHHHHGGGEEEEECG
T ss_pred             CCCCeeCHHHHHhhCCCCCEEEEECCEEEEcccccccCCCHHHHHHHhcCCcchHHHHHcCCCHHHHHHHHhCeeEEECh
Confidence            46789999999999999999999999999999999999999999999999999999997 69999999999999997654


Q ss_pred             c
Q 013234           82 D   82 (447)
Q Consensus        82 ~   82 (447)
                      +
T Consensus        87 ~   87 (92)
T 3ner_A           87 S   87 (92)
T ss_dssp             G
T ss_pred             H
Confidence            3
>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus} SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A 1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A* 1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A* 1u9u_A* 1m20_A* ... Back     alignment and structure
>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox, heme, endoplasmic reticulu flavoprotein, iron, metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A {Homo sapiens} Back     alignment and structure
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM; 1.65A {Ectothiorhodospira shaposhnikovii} SCOP: d.120.1.1 Back     alignment and structure
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme, electron transport; HET: HEM; 1.55A {Musca domestica} Back     alignment and structure
>1hko_A Cytochrome B5; electron transfer protein, heme, electron transport; HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1 PDB: 2i96_A* Back     alignment and structure
>2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown function, HERC2 cytochrome domain, ligase binding, phosphoprotein; NMR {Homo sapiens} Back     alignment and structure
>1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM; 1.20A {Homo sapiens} SCOP: d.120.1.1 Back     alignment and structure
>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron transport; HET: HEM; 1.80A {Ascaris suum} Back     alignment and structure
>1sox_A Sulfite oxidase; oxidoreductase, sulfite oxidation; HET: MTE HEM EPE; 1.90A {Gallus gallus} SCOP: b.1.18.6 d.120.1.1 d.176.1.1 PDB: 3hc2_A* 3hbq_A* 3hbg_A* 3hbp_A* 3r18_A* 3r19_A* Back     alignment and structure
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* Back     alignment and structure
>1j03_A Putative steroid binding protein; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.120.1.2 PDB: 1t0g_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 447
d1kbia297 d.120.1.1 (A:1-97) Flavocytochrome b2, N-terminal 3e-21
d1cyoa_88 d.120.1.1 (A:) Cytochrome b5 {Cow (Bos taurus) [Ta 2e-20
d1cxya_81 d.120.1.1 (A:) Cytochrome b558 {Ectothiorhodospira 7e-20
d1euea_86 d.120.1.1 (A:) Cytochrome b5 {Rat (Rattus norvegic 7e-18
d1mj4a_80 d.120.1.1 (A:) Sulfite oxidase, N-terminal domain 3e-16
d1soxa291 d.120.1.1 (A:3-93) Sulfite oxidase, N-terminal dom 7e-16
d1t0ga_109 d.120.1.2 (A:) Putative steroid binding protein AT 0.001
>d1kbia2 d.120.1.1 (A:1-97) Flavocytochrome b2, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 97 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cytochrome b5-like heme/steroid binding domain
superfamily: Cytochrome b5-like heme/steroid binding domain
family: Cytochrome b5
domain: Flavocytochrome b2, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 85.8 bits (212), Expect = 3e-21
 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 3/93 (3%)

Query: 1  MVDSKKHISQQDLKGHNKPGDLWISVQGKVYNVTDWTKHHPGGDLPLLSLAGQDVTDAFV 60
          +  +K+ IS  ++  HNKP D W+ + G VY++T +  +HPGG   +   AG+DVT  F 
Sbjct: 4  LDMNKQKISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFE 63

Query: 61 AYHPGAAWQ--YLDKFFTGYYLEDYTVSEASKD 91
            H           +   G  L+     E    
Sbjct: 64 PLHAPNVIDKYIAPEKKLG-PLQGSMPPELVCP 95
>d1cyoa_ d.120.1.1 (A:) Cytochrome b5 {Cow (Bos taurus) [TaxId: 9913]} Length = 88 Back     information, alignment and structure
>d1cxya_ d.120.1.1 (A:) Cytochrome b558 {Ectothiorhodospira vacuolata [TaxId: 1054]} Length = 81 Back     information, alignment and structure
>d1euea_ d.120.1.1 (A:) Cytochrome b5 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 86 Back     information, alignment and structure
>d1mj4a_ d.120.1.1 (A:) Sulfite oxidase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 80 Back     information, alignment and structure
>d1soxa2 d.120.1.1 (A:3-93) Sulfite oxidase, N-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91 Back     information, alignment and structure
>d1t0ga_ d.120.1.2 (A:) Putative steroid binding protein AT2G24940 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 109 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query447
d1cyoa_88 Cytochrome b5 {Cow (Bos taurus) [TaxId: 9913]} 99.92
d1cxya_81 Cytochrome b558 {Ectothiorhodospira vacuolata [Tax 99.91
d1euea_86 Cytochrome b5 {Rat (Rattus norvegicus) [TaxId: 101 99.91
d1kbia297 Flavocytochrome b2, N-terminal domain {Baker's yea 99.89
d1soxa291 Sulfite oxidase, N-terminal domain {Chicken (Gallu 99.87
d1mj4a_80 Sulfite oxidase, N-terminal domain {Human (Homo sa 99.87
d1t0ga_109 Putative steroid binding protein AT2G24940 {Thale 98.5
>d1cyoa_ d.120.1.1 (A:) Cytochrome b5 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cytochrome b5-like heme/steroid binding domain
superfamily: Cytochrome b5-like heme/steroid binding domain
family: Cytochrome b5
domain: Cytochrome b5
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=5.3e-26  Score=173.21  Aligned_cols=81  Identities=28%  Similarity=0.501  Sum_probs=75.5

Q ss_pred             CCCCCCcCHHHHcccCCCCCeEEEEcCeEEecCCCcccccccccccccccCCchhhHHHhc-CcHHHHhhhhhccccccc
Q 013234            2 VDSKKHISQQDLKGHNKPGDLWISVQGKVYNVTDWTKHHPGGDLPLLSLAGQDVTDAFVAY-HPGAAWQYLDKFFTGYYL   80 (447)
Q Consensus         2 ~~~~~~~~~~e~~~~~~~~~~~v~i~g~vydvt~f~~~hPgg~~~l~~~~g~D~t~~f~~~-H~~~~~~~l~~~~vg~~~   80 (447)
                      ++..|.||++||++||++++|||+|+|+|||||+|++.||||.+.|..++|+|+|+.|+++ |+..|+++|++|+||++.
T Consensus         1 s~~~k~yt~~Ev~~H~~~~d~Wvii~g~VYDvT~f~~~HPGG~~~i~~~aG~D~T~~F~~~~hs~~a~~~l~~~~IG~l~   80 (88)
T d1cyoa_           1 SKAVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELH   80 (88)
T ss_dssp             CCSCCEECHHHHTTCEETTEEEEEETTEEEECTTTTTTCTTCSHHHHHHTTSBCHHHHHHTTCCHHHHHHHTTTEEEEEC
T ss_pred             CCccccccHHHHHhhCCCCCeEEEECCEEEecchhhcccCCchHHHHHHcCCchHHHHHHHCCCHHHHHHHHcCccEEEC
Confidence            4678999999999999999999999999999999999999999999999999999999987 888899999999999765


Q ss_pred             cc
Q 013234           81 ED   82 (447)
Q Consensus        81 ~~   82 (447)
                      ++
T Consensus        81 ~~   82 (88)
T d1cyoa_          81 PD   82 (88)
T ss_dssp             GG
T ss_pred             cc
Confidence            54
>d1cxya_ d.120.1.1 (A:) Cytochrome b558 {Ectothiorhodospira vacuolata [TaxId: 1054]} Back     information, alignment and structure
>d1euea_ d.120.1.1 (A:) Cytochrome b5 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1kbia2 d.120.1.1 (A:1-97) Flavocytochrome b2, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1soxa2 d.120.1.1 (A:3-93) Sulfite oxidase, N-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1mj4a_ d.120.1.1 (A:) Sulfite oxidase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t0ga_ d.120.1.2 (A:) Putative steroid binding protein AT2G24940 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure