Citrus Sinensis ID: 013241

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------
MDASMTMSKSVTTTSPGLFVGRGKGILRSSQCSFMVGSRTVNFPRQVVAGVGGKLKRRCGGGGALKVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQELQAPQKIVLATTPNEMAGATA
ccccccccccccccccccccccccccccccccccccccHHcccccccccccccHHHHHHHHcccEEEcccHHHHHHccccHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHcccEEEEEccccccccEEEcccHHHHHHHHHHHHHHHHHHcccccEEEEEccccccEEEEEEEEcccccEEEEcccccHHHHccHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccEEEEEEEccccEEEEEcccccccccccccEEHHHHHHHHHHHHHccccccccccccEEccEEEEEEEcccccccccccccccccEEEccccccEEEccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHcccEEccccccHHHHHHHcccccccccccccccccccHHHHccccccccccccHHHHcccc
cccEEEcccccccccccEEEcccccccccHHHHHHcccccccccccccHHccHHHHHHHHHcccEEEcccHcEEEEcccHHHHHHHHHHHHHHccEEEEEEEccccccHHHHHccEEEEEEcccHHHHHHcccEEEEEccccccccEEEEccHHHHHHHHHHHHHHHHHHcccccEEEEEcccccEEEEEEEEEEccccEEEEEEEEEEEEEccEEEEEEEccccccHHHHHHHHHHHHHHHHHHccEEEEEEEEEEEEccEEEEEEEEccccccHHHHHHHHcccHHHHHHHHHccccccccHHHcccccEEEEEEEEcEcccccccEccEEccEEEccccccEEEEEccccccEEccccccEEEEEEEEEccHHHHHHHHHHHHHHcEEEcccEcHHHHHHHHccHHHHHccccccHHHHcHHHHcccccccccHHHHHHHHHcc
mdasmtmsksvtttspglfvgrgkgilrssqcsfmvgsrtvnfprqvvagvggklkrrcggggalkvtCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIkataggggrgmrlakePDEFVKLLQQAKSEAAAAFGNDGVYLEKyvqnprhiEFQVLAdkygnvvhfgerdcSIQRRNQKLleeapspaltpELRKAMGDAAVAAAASIGYIGVGTVEFLldergsfyfmeMNTRIQVEHPVTEMISSVDLIEEQIHVAMGgklrykqediVLQGHSiecrinaedpfknfrpgpgritaylpaggpfvrmdshvypdyvvppsydslLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEYHKLILdvedfkngkvdtafipkheqelqapqkivlattpnemagata
mdasmtmsksvtttspglfvgrgKGILRSSQCSFmvgsrtvnfprqvvagvggklkrrcggggalkvtcrqekilvanrGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINaedpfknfrpgPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRAlndtiitgvptTIEYHKLILDVEDFKNGKVDTAFIPkheqelqapqkivlatTPNEMAGATA
MDAsmtmsksvtttsPGLFVGRGKGILRSSQCSFMVGSRTVNFPRQVVAgvggklkrrcggggALKVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDaavaaaaSIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQELQAPQKIVLATTPNEMAGATA
****************GLFVGRGKGILRSSQCSFMVGSRTVNFPRQVVAGVGGKLKRRCGGGGALKVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGGGRGMRL*****EFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSI************************GDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIP**************************
************TTSPGLFV************SFMVGSRTVNFPRQVVAGVGGKLKRRCGGGGALKVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQ***************EMAGA**
************TTSPGLFVGRGKGILRSSQCSFMVGSRTVNFPRQVVAGVGGKLKRRCGGGGALKVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQELQAPQKIVLATTPNEMAGATA
**ASMTMSKSVTTTSPGLFVGRGKGILRSSQCSFMVGSRTVNFPRQVVAGVGGKLKRRCGGGGALKVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQELQAPQKIVLATTPNEMAGATA
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDASMTMSKSVTTTSPGLFVGRGKGILRSSQCSFMVGSRTVNFPRQVVAGVGGKLKRRCGGGGALKVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQELQAPQKIVLATTPNEMAGATA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query447 2.2.26 [Sep-21-2011]
B9HBA8528 Biotin carboxylase 1, chl yes no 0.693 0.587 0.927 1e-176
B9N843526 Biotin carboxylase 2, chl no no 0.693 0.589 0.930 1e-174
O04983537 Biotin carboxylase, chlor yes no 0.682 0.567 0.926 1e-169
Q06862447 Biotin carboxylase OS=Nos yes no 0.671 0.671 0.67 1e-122
O27939491 Pyruvate carboxylase subu yes no 0.702 0.639 0.561 1e-104
P49787450 Biotin carboxylase 1 OS=B yes no 0.682 0.677 0.581 3e-97
Q58626501 Pyruvate carboxylase subu yes no 0.689 0.614 0.517 8e-90
D3DJ42472 2-oxoglutarate carboxylas yes no 0.655 0.620 0.549 1e-88
P43873448 Biotin carboxylase OS=Hae yes no 0.727 0.725 0.497 1e-86
P24182449 Biotin carboxylase OS=Esc N/A no 0.659 0.657 0.525 4e-84
>sp|B9HBA8|ACCC1_POPTR Biotin carboxylase 1, chloroplastic OS=Populus trichocarpa GN=POPTRDRAFT_831870 PE=2 SV=1 Back     alignment and function desciption
 Score =  617 bits (1591), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 293/316 (92%), Positives = 308/316 (97%)

Query: 121 EEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEK 180
           EE V+LA+E+G+PVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEK
Sbjct: 205 EEGVRLANEIGYPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEK 264

Query: 181 YVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVA 240
           YVQNPRHIEFQVLADK+GNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAV+
Sbjct: 265 YVQNPRHIEFQVLADKFGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVS 324

Query: 241 AAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKL 300
           AAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQI VAMG KL
Sbjct: 325 AAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIRVAMGEKL 384

Query: 301 RYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPS 360
           RYKQEDIVL+GHSIECRINAED FK FRPGPGRITAYLP+GGPFVRMDSHVYPDYVVPPS
Sbjct: 385 RYKQEDIVLRGHSIECRINAEDAFKGFRPGPGRITAYLPSGGPFVRMDSHVYPDYVVPPS 444

Query: 361 YDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFI 420
           YDSLLGKLIVWAPTREKAIERMKRAL+DTIITGVPTTI+YHKLIL++EDFKNG VDTAFI
Sbjct: 445 YDSLLGKLIVWAPTREKAIERMKRALDDTIITGVPTTIDYHKLILEIEDFKNGNVDTAFI 504

Query: 421 PKHEQELQAPQKIVLA 436
           PKHE+EL APQ+I+ A
Sbjct: 505 PKHEKELAAPQQIIPA 520
This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
Populus trichocarpa (taxid: 3694)
EC: 6EC: .EC: 4EC: .EC: 1EC: .EC: 2
>sp|B9N843|ACCC2_POPTR Biotin carboxylase 2, chloroplastic OS=Populus trichocarpa GN=POPTRDRAFT_673504 PE=2 SV=1 Back     alignment and function description
>sp|O04983|ACCC_ARATH Biotin carboxylase, chloroplastic OS=Arabidopsis thaliana GN=CAC2 PE=1 SV=1 Back     alignment and function description
>sp|Q06862|ACCC_NOSS1 Biotin carboxylase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=accC PE=3 SV=1 Back     alignment and function description
>sp|O27939|PYCA_METTH Pyruvate carboxylase subunit A OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=pycA PE=1 SV=1 Back     alignment and function description
>sp|P49787|ACCC1_BACSU Biotin carboxylase 1 OS=Bacillus subtilis (strain 168) GN=accC1 PE=3 SV=3 Back     alignment and function description
>sp|Q58626|PYCA_METJA Pyruvate carboxylase subunit A OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=pycA PE=1 SV=1 Back     alignment and function description
>sp|D3DJ42|2OCS_HYDTT 2-oxoglutarate carboxylase small subunit OS=Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6) GN=cfiB PE=1 SV=1 Back     alignment and function description
>sp|P43873|ACCC_HAEIN Biotin carboxylase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=accC PE=3 SV=1 Back     alignment and function description
>sp|P24182|ACCC_ECOLI Biotin carboxylase OS=Escherichia coli (strain K12) GN=accC PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query447
239759398533 biotin carboxylase [Camellia oleifera] 0.713 0.598 0.929 1e-175
351725715539 biotin carboxylase precursor [Glycine ma 0.731 0.606 0.917 1e-174
255557562541 Biotin caboxylase subunit (BC) of Het-AC 0.724 0.598 0.935 1e-174
357520639538 Biotin carboxylase [Medicago truncatula] 0.731 0.607 0.906 1e-174
224087339528 predicted protein [Populus trichocarpa] 0.693 0.587 0.927 1e-174
145910320535 chloroplast biotin carboxylase [Gossypiu 0.718 0.6 0.911 1e-174
380853844536 acetyl-CoA carboxylase [Nicotiana tabacu 0.729 0.608 0.923 1e-173
307566892536 acetyl-CoA carboxylase BC subunit [Jatro 0.724 0.604 0.929 1e-173
238837063536 heteromeric acetyl-CoA biotin carboxylas 0.724 0.604 0.929 1e-173
351726778539 biotin carboxylase precursor [Glycine ma 0.731 0.606 0.914 1e-173
>gi|239759398|gb|ACS14663.1| biotin carboxylase [Camellia oleifera] Back     alignment and taxonomy information
 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 304/327 (92%), Positives = 316/327 (96%)

Query: 121 EEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEK 180
           EEAV+L++E+GFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEK
Sbjct: 207 EEAVRLSEEIGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEK 266

Query: 181 YVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVA 240
           Y+QNPRHIEFQVLADK+GNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVA
Sbjct: 267 YIQNPRHIEFQVLADKFGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVA 326

Query: 241 AAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKL 300
           AAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQI VAMG KL
Sbjct: 327 AAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIRVAMGEKL 386

Query: 301 RYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPS 360
           RYKQEDIVL+GHSIECRINAED FKNFRPGPGRITAYLP+GGPFVRMDSHVYPDYVVPPS
Sbjct: 387 RYKQEDIVLRGHSIECRINAEDAFKNFRPGPGRITAYLPSGGPFVRMDSHVYPDYVVPPS 446

Query: 361 YDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFI 420
           YDSLLGKLIVWAPTRE+AIERMKRALNDTII GVPTTI+YHKLILDVEDFKNGKVDTAFI
Sbjct: 447 YDSLLGKLIVWAPTRERAIERMKRALNDTIIIGVPTTIDYHKLILDVEDFKNGKVDTAFI 506

Query: 421 PKHEQELQAPQKIVLATTPNEMAGATA 447
           PKHEQEL APQK+V AT   E+  ATA
Sbjct: 507 PKHEQELAAPQKMVPATPAKELTKATA 533

Source: Camellia oleifera

Species: Camellia oleifera

Genus: Camellia

Family: Theaceae

Order: Ericales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|351725715|ref|NP_001237358.1| biotin carboxylase precursor [Glycine max] gi|8886467|gb|AAF80468.1|AF163149_1 acetyl-CoA carboxylase [Glycine max] gi|2253384|gb|AAC02267.1| biotin carboxylase precursor [Glycine max] Back     alignment and taxonomy information
>gi|255557562|ref|XP_002519811.1| Biotin caboxylase subunit (BC) of Het-ACCase [Ricinus communis] gi|223541050|gb|EEF42607.1| Biotin caboxylase subunit (BC) of Het-ACCase [Ricinus communis] Back     alignment and taxonomy information
>gi|357520639|ref|XP_003630608.1| Biotin carboxylase [Medicago truncatula] gi|355524630|gb|AET05084.1| Biotin carboxylase [Medicago truncatula] Back     alignment and taxonomy information
>gi|224087339|ref|XP_002308127.1| predicted protein [Populus trichocarpa] gi|290463112|sp|B9HBA8.1|ACCC1_POPTR RecName: Full=Biotin carboxylase 1, chloroplastic; AltName: Full=Acetyl-CoA carboxylase subunit A 1; Short=ACC; Flags: Precursor gi|222854103|gb|EEE91650.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|145910320|gb|ABP98813.1| chloroplast biotin carboxylase [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|380853844|gb|AFE88229.1| acetyl-CoA carboxylase [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|307566892|gb|ADN52612.1| acetyl-CoA carboxylase BC subunit [Jatropha curcas] Back     alignment and taxonomy information
>gi|238837063|gb|ACR61637.1| heteromeric acetyl-CoA biotin carboxylase [Jatropha curcas] Back     alignment and taxonomy information
>gi|351726778|ref|NP_001237138.1| biotin carboxylase precursor [Glycine max] gi|3219361|gb|AAC23573.1| biotin carboxylase precursor [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query447
TIGR_CMR|GSU_2019446 GSU_2019 "acetyl-CoA carboxyla 0.675 0.677 0.597 5.4e-115
TIGR_CMR|BA_4408450 BA_4408 "acetyl-CoA carboxylas 0.680 0.675 0.567 6.4e-108
TIGR_CMR|CHY_1998449 CHY_1998 "acetyl-CoA carboxyla 0.677 0.674 0.564 2.1e-107
TIGR_CMR|CHY_0918517 CHY_0918 "acetyl-CoA carboxyla 0.682 0.589 0.532 1.1e-103
TIGR_CMR|CJE_1482443 CJE_1482 "acetyl-CoA carboxyla 0.673 0.679 0.528 6.7e-100
UNIPROTKB|Q9KV62447 VC_0295 "Acetyl-CoA carboxylas 0.657 0.657 0.523 2.9e-99
TIGR_CMR|VC_0295447 VC_0295 "acetyl-CoA carboxylas 0.657 0.657 0.523 2.9e-99
TIGR_CMR|DET_0120498 DET_0120 "acetyl-CoA carboxyla 0.718 0.644 0.496 2e-96
TIGR_CMR|SPO_1101 681 SPO_1101 "propionyl-CoA carbox 0.503 0.330 0.528 2e-91
UNIPROTKB|P05165 728 PCCA "Propionyl-CoA carboxylas 0.671 0.412 0.476 9.1e-88
TIGR_CMR|GSU_2019 GSU_2019 "acetyl-CoA carboxylase, biotin carboxylase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
 Score = 958 (342.3 bits), Expect = 5.4e-115, Sum P(2) = 5.4e-115
 Identities = 181/303 (59%), Positives = 224/303 (73%)

Query:   120 IEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLE 179
             + EAVK+A ++GFPV+IKATAGGGGRGM++   P         A++EA A FGN  VY+E
Sbjct:   141 VNEAVKIAKKIGFPVIIKATAGGGGRGMKIVHSPAALPNAFATARAEAQAGFGNPEVYIE 200

Query:   180 KYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXX 239
             KY + PRH+E QV+ADK+GNV+H GERDCSIQRR+QK++EE+P P +TP LRKAMGD   
Sbjct:   201 KYCEKPRHVEIQVMADKHGNVIHLGERDCSIQRRHQKIIEESPCPVMTPALRKAMGDAAV 260

Query:   240 XXXXSIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 299
                 ++GY  VGTVEFL+D+  +FYFMEMNTR+QVEHPVTEM++ +D++ EQI  A G K
Sbjct:   261 RASKAVGYDSVGTVEFLVDKDLNFYFMEMNTRVQVEHPVTEMVTGIDIVREQIRSAAGLK 320

Query:   300 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPP 359
             LRYKQ DI L GH+IECRINAEDP K F P PG+I  Y   GG  VR+DS VY  Y V P
Sbjct:   321 LRYKQSDIKLHGHAIECRINAEDPVK-FTPSPGKIVGYHTPGGLGVRIDSFVYDQYSVVP 379

Query:   360 SYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAF 419
              YDSL+ KLIV A TRE AI RM RAL++ II G+ TTI +HK I+D +DF  G VDT F
Sbjct:   380 HYDSLIAKLIVHAETREDAIRRMARALDEYIIEGIKTTIPFHKRIMDNKDFMEGNVDTGF 439

Query:   420 IPK 422
             + +
Sbjct:   440 LER 442
GO:0003989 "acetyl-CoA carboxylase activity" evidence=ISS
GO:0006633 "fatty acid biosynthetic process" evidence=ISS
TIGR_CMR|BA_4408 BA_4408 "acetyl-CoA carboxylase, biotin carboxylase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1998 CHY_1998 "acetyl-CoA carboxylase, biotin carboxylase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0918 CHY_0918 "acetyl-CoA carboxylase, biotin carboxylase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_1482 CJE_1482 "acetyl-CoA carboxylase, biotin carboxylase" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KV62 VC_0295 "Acetyl-CoA carboxylase, biotin carboxylase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_0295 VC_0295 "acetyl-CoA carboxylase, biotin carboxylase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0120 DET_0120 "acetyl-CoA carboxylase, biotin carboxylase" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_1101 SPO_1101 "propionyl-CoA carboxylase, alpha subunit" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|P05165 PCCA "Propionyl-CoA carboxylase alpha chain, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q58626PYCA_METJA6, ., 4, ., 1, ., 10.51770.68900.6147yesno
Q06862ACCC_NOSS16, ., 4, ., 1, ., 20.670.67110.6711yesno
P49787ACCC1_BACSU6, ., 4, ., 1, ., 20.58160.68230.6777yesno
O04983ACCC_ARATH6, ., 4, ., 1, ., 20.92670.68230.5679yesno
O27939PYCA_METTH6, ., 4, ., 1, ., 10.56190.70240.6395yesno
D3DJ422OCS_HYDTT6, ., 4, ., 1, ., 70.54930.65540.6207yesno
B9HBA8ACCC1_POPTR6, ., 4, ., 1, ., 20.92720.69350.5871yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.4.1.20.979
3rd Layer6.3.40.983
3rd Layer6.3.4.140.979
3rd Layer6.4.10.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query447
PRK08591451 PRK08591, PRK08591, acetyl-CoA carboxylase biotin 0.0
TIGR00514449 TIGR00514, accC, acetyl-CoA carboxylase, biotin ca 0.0
PRK08654499 PRK08654, PRK08654, pyruvate carboxylase subunit A 1e-164
PRK05586447 PRK05586, PRK05586, biotin carboxylase; Validated 1e-162
COG0439449 COG0439, AccC, Biotin carboxylase [Lipid metabolis 1e-159
COG4770 645 COG4770, COG4770, Acetyl/propionyl-CoA carboxylase 1e-159
PRK12999 1146 PRK12999, PRK12999, pyruvate carboxylase; Reviewed 1e-156
PRK06111450 PRK06111, PRK06111, acetyl-CoA carboxylase biotin 1e-149
PRK07178472 PRK07178, PRK07178, pyruvate carboxylase subunit A 1e-144
PRK08462445 PRK08462, PRK08462, biotin carboxylase; Validated 1e-144
PRK08463478 PRK08463, PRK08463, acetyl-CoA carboxylase subunit 1e-132
PRK12833467 PRK12833, PRK12833, acetyl-CoA carboxylase biotin 1e-131
COG1038 1149 COG1038, PycA, Pyruvate carboxylase [Energy produc 1e-128
TIGR01235 1143 TIGR01235, pyruv_carbox, pyruvate carboxylase 1e-113
TIGR02712 1201 TIGR02712, urea_carbox, urea carboxylase 1e-102
pfam02786211 pfam02786, CPSase_L_D2, Carbamoyl-phosphate syntha 5e-85
smart00878107 smart00878, Biotin_carb_C, Biotin carboxylase C-te 3e-56
pfam02785107 pfam02785, Biotin_carb_C, Biotin carboxylase C-ter 7e-56
PRK08591451 PRK08591, PRK08591, acetyl-CoA carboxylase biotin 2e-25
TIGR00514449 TIGR00514, accC, acetyl-CoA carboxylase, biotin ca 1e-23
pfam00289108 pfam00289, CPSase_L_chain, Carbamoyl-phosphate syn 1e-21
PRK05586447 PRK05586, PRK05586, biotin carboxylase; Validated 4e-21
COG4770 645 COG4770, COG4770, Acetyl/propionyl-CoA carboxylase 5e-21
TIGR02712 1201 TIGR02712, urea_carbox, urea carboxylase 3e-19
PRK08654 499 PRK08654, PRK08654, pyruvate carboxylase subunit A 7e-19
COG0439449 COG0439, AccC, Biotin carboxylase [Lipid metabolis 5e-18
PRK06111450 PRK06111, PRK06111, acetyl-CoA carboxylase biotin 2e-17
PRK08462445 PRK08462, PRK08462, biotin carboxylase; Validated 5e-17
PRK07178472 PRK07178, PRK07178, pyruvate carboxylase subunit A 2e-15
PRK12999 1146 PRK12999, PRK12999, pyruvate carboxylase; Reviewed 2e-14
PRK12833467 PRK12833, PRK12833, acetyl-CoA carboxylase biotin 4e-14
COG1038 1149 COG1038, PycA, Pyruvate carboxylase [Energy produc 5e-13
TIGR013691050 TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synth 1e-12
COG0458400 COG0458, CarB, Carbamoylphosphate synthase large s 1e-12
TIGR01235 1143 TIGR01235, pyruv_carbox, pyruvate carboxylase 7e-12
PRK08463478 PRK08463, PRK08463, acetyl-CoA carboxylase subunit 9e-12
TIGR01369 1050 TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synth 3e-11
TIGR00768277 TIGR00768, rimK_fam, alpha-L-glutamate ligases, Ri 1e-09
pfam13535183 pfam13535, ATP-grasp_4, ATP-grasp domain 5e-09
PRK01372304 PRK01372, ddl, D-alanine--D-alanine ligase; Review 7e-09
PRK128151068 PRK12815, carB, carbamoyl phosphate synthase large 1e-08
PRK12815 1068 PRK12815, carB, carbamoyl phosphate synthase large 4e-08
pfam02222171 pfam02222, ATP-grasp, ATP-grasp domain 4e-08
PLN027351102 PLN02735, PLN02735, carbamoyl-phosphate synthase 4e-08
PRK06019372 PRK06019, PRK06019, phosphoribosylaminoimidazole c 7e-08
TIGR01205315 TIGR01205, D_ala_D_alaTIGR, D-alanine--D-alanine l 2e-07
COG1181317 COG1181, DdlA, D-alanine-D-alanine ligase and rela 4e-07
pfam07478201 pfam07478, Dala_Dala_lig_C, D-ala D-ala ligase C-t 5e-07
PRK05294 1066 PRK05294, carB, carbamoyl phosphate synthase large 7e-07
COG0026375 COG0026, PurK, Phosphoribosylaminoimidazole carbox 1e-06
PLN02948 577 PLN02948, PLN02948, phosphoribosylaminoimidazole c 4e-06
TIGR02144280 TIGR02144, LysX_arch, Lysine biosynthesis enzyme L 7e-06
COG0189318 COG0189, RimK, Glutathione synthase/Ribosomal prot 3e-05
TIGR01161352 TIGR01161, purK, phosphoribosylaminoimidazole carb 3e-05
PRK12767326 PRK12767, PRK12767, carbamoyl phosphate synthase-l 7e-05
pfam08443190 pfam08443, RimK, RimK-like ATP-grasp domain 1e-04
PRK14569296 PRK14569, PRK14569, D-alanyl-alanine synthetase A; 3e-04
PRK02186 887 PRK02186, PRK02186, argininosuccinate lyase; Provi 0.001
PRK052941066 PRK05294, carB, carbamoyl phosphate synthase large 0.003
>gnl|CDD|236307 PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated Back     alignment and domain information 
 Score =  573 bits (1479), Expect = 0.0
 Identities = 187/304 (61%), Positives = 236/304 (77%)

Query: 120 IEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLE 179
            EEA+ +A E+G+PV+IKATAGGGGRGMR+ +   E  K    A++EA AAFGN GVY+E
Sbjct: 141 EEEALAIAKEIGYPVIIKATAGGGGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYME 200

Query: 180 KYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAV 239
           KY++NPRHIE QVLAD +GN +H GERDCS+QRR+QK+LEEAPSPA+T ELR+ +G+AAV
Sbjct: 201 KYLENPRHIEIQVLADGHGNAIHLGERDCSLQRRHQKVLEEAPSPAITEELRRKIGEAAV 260

Query: 240 AAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK 299
            AA +IGY G GT+EFL ++ G FYF+EMNTRIQVEHPVTEMI+ VDL++EQI +A G  
Sbjct: 261 KAAKAIGYRGAGTIEFLYEKNGEFYFIEMNTRIQVEHPVTEMITGVDLVKEQIRIAAGEP 320

Query: 300 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPP 359
           L  KQEDIV +GH+IECRINAEDP KNF P PG+IT Y P GGP VR+DS VY  Y +PP
Sbjct: 321 LSIKQEDIVFRGHAIECRINAEDPAKNFMPSPGKITRYHPPGGPGVRVDSAVYTGYTIPP 380

Query: 360 SYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAF 419
            YDS++GKLIV   TRE+AI RMKRAL++ +I G+ TTI  H  +L+  +F+ G  +  +
Sbjct: 381 YYDSMIGKLIVHGETREEAIARMKRALSEFVIDGIKTTIPLHLRLLNDPNFQAGDYNIHY 440

Query: 420 IPKH 423
           + K 
Sbjct: 441 LEKK 444

Length = 451
>gnl|CDD|129605 TIGR00514, accC, acetyl-CoA carboxylase, biotin carboxylase subunit Back     alignment and domain information
>gnl|CDD|236325 PRK08654, PRK08654, pyruvate carboxylase subunit A; Validated Back     alignment and domain information
>gnl|CDD|180150 PRK05586, PRK05586, biotin carboxylase; Validated Back     alignment and domain information
>gnl|CDD|223516 COG0439, AccC, Biotin carboxylase [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|227111 COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|237263 PRK12999, PRK12999, pyruvate carboxylase; Reviewed Back     alignment and domain information
>gnl|CDD|180406 PRK06111, PRK06111, acetyl-CoA carboxylase biotin carboxylase subunit; Validated Back     alignment and domain information
>gnl|CDD|180865 PRK07178, PRK07178, pyruvate carboxylase subunit A; Validated Back     alignment and domain information
>gnl|CDD|236269 PRK08462, PRK08462, biotin carboxylase; Validated Back     alignment and domain information
>gnl|CDD|169452 PRK08463, PRK08463, acetyl-CoA carboxylase subunit A; Validated Back     alignment and domain information
>gnl|CDD|183781 PRK12833, PRK12833, acetyl-CoA carboxylase biotin carboxylase subunit; Provisional Back     alignment and domain information
>gnl|CDD|223968 COG1038, PycA, Pyruvate carboxylase [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|130302 TIGR01235, pyruv_carbox, pyruvate carboxylase Back     alignment and domain information
>gnl|CDD|233980 TIGR02712, urea_carbox, urea carboxylase Back     alignment and domain information
>gnl|CDD|190425 pfam02786, CPSase_L_D2, Carbamoyl-phosphate synthase L chain, ATP binding domain Back     alignment and domain information
>gnl|CDD|214878 smart00878, Biotin_carb_C, Biotin carboxylase C-terminal domain Back     alignment and domain information
>gnl|CDD|202395 pfam02785, Biotin_carb_C, Biotin carboxylase C-terminal domain Back     alignment and domain information
>gnl|CDD|236307 PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated Back     alignment and domain information
>gnl|CDD|129605 TIGR00514, accC, acetyl-CoA carboxylase, biotin carboxylase subunit Back     alignment and domain information
>gnl|CDD|201133 pfam00289, CPSase_L_chain, Carbamoyl-phosphate synthase L chain, N-terminal domain Back     alignment and domain information
>gnl|CDD|180150 PRK05586, PRK05586, biotin carboxylase; Validated Back     alignment and domain information
>gnl|CDD|227111 COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|233980 TIGR02712, urea_carbox, urea carboxylase Back     alignment and domain information
>gnl|CDD|236325 PRK08654, PRK08654, pyruvate carboxylase subunit A; Validated Back     alignment and domain information
>gnl|CDD|223516 COG0439, AccC, Biotin carboxylase [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|180406 PRK06111, PRK06111, acetyl-CoA carboxylase biotin carboxylase subunit; Validated Back     alignment and domain information
>gnl|CDD|236269 PRK08462, PRK08462, biotin carboxylase; Validated Back     alignment and domain information
>gnl|CDD|180865 PRK07178, PRK07178, pyruvate carboxylase subunit A; Validated Back     alignment and domain information
>gnl|CDD|237263 PRK12999, PRK12999, pyruvate carboxylase; Reviewed Back     alignment and domain information
>gnl|CDD|183781 PRK12833, PRK12833, acetyl-CoA carboxylase biotin carboxylase subunit; Provisional Back     alignment and domain information
>gnl|CDD|223968 COG1038, PycA, Pyruvate carboxylase [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|233379 TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synthase, large subunit Back     alignment and domain information
>gnl|CDD|223534 COG0458, CarB, Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|130302 TIGR01235, pyruv_carbox, pyruvate carboxylase Back     alignment and domain information
>gnl|CDD|169452 PRK08463, PRK08463, acetyl-CoA carboxylase subunit A; Validated Back     alignment and domain information
>gnl|CDD|233379 TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synthase, large subunit Back     alignment and domain information
>gnl|CDD|233121 TIGR00768, rimK_fam, alpha-L-glutamate ligases, RimK family Back     alignment and domain information
>gnl|CDD|222206 pfam13535, ATP-grasp_4, ATP-grasp domain Back     alignment and domain information
>gnl|CDD|234948 PRK01372, ddl, D-alanine--D-alanine ligase; Reviewed Back     alignment and domain information
>gnl|CDD|237215 PRK12815, carB, carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>gnl|CDD|237215 PRK12815, carB, carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>gnl|CDD|216935 pfam02222, ATP-grasp, ATP-grasp domain Back     alignment and domain information
>gnl|CDD|215391 PLN02735, PLN02735, carbamoyl-phosphate synthase Back     alignment and domain information
>gnl|CDD|235674 PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed Back     alignment and domain information
>gnl|CDD|233310 TIGR01205, D_ala_D_alaTIGR, D-alanine--D-alanine ligase Back     alignment and domain information
>gnl|CDD|224102 COG1181, DdlA, D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|203643 pfam07478, Dala_Dala_lig_C, D-ala D-ala ligase C-terminus Back     alignment and domain information
>gnl|CDD|235393 PRK05294, carB, carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>gnl|CDD|223105 COG0026, PurK, Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|178534 PLN02948, PLN02948, phosphoribosylaminoimidazole carboxylase Back     alignment and domain information
>gnl|CDD|131199 TIGR02144, LysX_arch, Lysine biosynthesis enzyme LysX Back     alignment and domain information
>gnl|CDD|223267 COG0189, RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|233295 TIGR01161, purK, phosphoribosylaminoimidazole carboxylase, PurK protein Back     alignment and domain information
>gnl|CDD|237195 PRK12767, PRK12767, carbamoyl phosphate synthase-like protein; Provisional Back     alignment and domain information
>gnl|CDD|117020 pfam08443, RimK, RimK-like ATP-grasp domain Back     alignment and domain information
>gnl|CDD|173033 PRK14569, PRK14569, D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>gnl|CDD|235010 PRK02186, PRK02186, argininosuccinate lyase; Provisional Back     alignment and domain information
>gnl|CDD|235393 PRK05294, carB, carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 447
COG4770 645 Acetyl/propionyl-CoA carboxylase, alpha subunit [L 100.0
KOG0238 670 consensus 3-Methylcrotonyl-CoA carboxylase, biotin 100.0
COG1038 1149 PycA Pyruvate carboxylase [Energy production and c 100.0
COG0439449 AccC Biotin carboxylase [Lipid metabolism] 100.0
PRK08654499 pyruvate carboxylase subunit A; Validated 100.0
KOG0369 1176 consensus Pyruvate carboxylase [Energy production 100.0
TIGR01235 1143 pyruv_carbox pyruvate carboxylase. This enzyme pla 100.0
PRK08463478 acetyl-CoA carboxylase subunit A; Validated 100.0
PRK07178472 pyruvate carboxylase subunit A; Validated 100.0
PRK12833467 acetyl-CoA carboxylase biotin carboxylase subunit; 100.0
PRK12999 1146 pyruvate carboxylase; Reviewed 100.0
PRK05586447 biotin carboxylase; Validated 100.0
TIGR00514449 accC acetyl-CoA carboxylase, biotin carboxylase su 100.0
PRK08462445 biotin carboxylase; Validated 100.0
PRK08591451 acetyl-CoA carboxylase biotin carboxylase subunit; 100.0
TIGR02712 1201 urea_carbox urea carboxylase. Members of this fami 100.0
KOG0368 2196 consensus Acetyl-CoA carboxylase [Lipid transport 100.0
PRK06111450 acetyl-CoA carboxylase biotin carboxylase subunit; 100.0
PF02786211 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, 100.0
PLN02948 577 phosphoribosylaminoimidazole carboxylase 100.0
TIGR01142380 purT phosphoribosylglycinamide formyltransferase 2 100.0
PRK06019372 phosphoribosylaminoimidazole carboxylase ATPase su 100.0
TIGR01369 1050 CPSaseII_lrg carbamoyl-phosphate synthase, large s 100.0
PLN02735 1102 carbamoyl-phosphate synthase 100.0
PF02785107 Biotin_carb_C: Biotin carboxylase C-terminal domai 99.98
PRK09288395 purT phosphoribosylglycinamide formyltransferase 2 99.97
PLN027351102 carbamoyl-phosphate synthase 99.97
smart00878107 Biotin_carb_C Biotin carboxylase C-terminal domain 99.97
PRK02186 887 argininosuccinate lyase; Provisional 99.97
TIGR01161352 purK phosphoribosylaminoimidazole carboxylase, Pur 99.97
PRK05294 1066 carB carbamoyl phosphate synthase large subunit; R 99.97
PRK07206416 hypothetical protein; Provisional 99.97
PRK13790379 phosphoribosylamine--glycine ligase; Provisional 99.97
PRK12815 1068 carB carbamoyl phosphate synthase large subunit; R 99.96
PLN02257434 phosphoribosylamine--glycine ligase 99.96
PRK00885420 phosphoribosylamine--glycine ligase; Provisional 99.96
COG0027394 PurT Formate-dependent phosphoribosylglycinamide f 99.96
PRK13789426 phosphoribosylamine--glycine ligase; Provisional 99.96
COG0458400 CarB Carbamoylphosphate synthase large subunit (sp 99.96
TIGR00877423 purD phosphoribosylamine--glycine ligase. This enz 99.95
PRK06395435 phosphoribosylamine--glycine ligase; Provisional 99.94
TIGR013691050 CPSaseII_lrg carbamoyl-phosphate synthase, large s 99.94
PRK128151068 carB carbamoyl phosphate synthase large subunit; R 99.94
PRK052941066 carB carbamoyl phosphate synthase large subunit; R 99.94
PRK14569296 D-alanyl-alanine synthetase A; Provisional 99.94
PRK06524493 biotin carboxylase-like protein; Validated 99.93
PRK05784486 phosphoribosylamine--glycine ligase; Provisional 99.93
COG0026375 PurK Phosphoribosylaminoimidazole carboxylase (NCA 99.93
PRK14570364 D-alanyl-alanine synthetase A; Provisional 99.93
PRK01966333 ddl D-alanyl-alanine synthetase A; Reviewed 99.92
PRK14568343 vanB D-alanine--D-lactate ligase; Provisional 99.92
PF13535184 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 99.92
PRK14572347 D-alanyl-alanine synthetase A; Provisional 99.91
PF07478203 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; In 99.91
PRK12767326 carbamoyl phosphate synthase-like protein; Provisi 99.91
PF02222172 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 T 99.9
PRK01372304 ddl D-alanine--D-alanine ligase; Reviewed 99.9
TIGR01205315 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a 99.9
PRK14573809 bifunctional D-alanyl-alanine synthetase A/UDP-N-a 99.89
PRK14571299 D-alanyl-alanine synthetase A; Provisional 99.89
COG0151428 PurD Phosphoribosylamine-glycine ligase [Nucleotid 99.89
PF15632329 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathwa 99.87
KOG0370 1435 consensus Multifunctional pyrimidine synthesis pro 99.87
COG2232389 Predicted ATP-dependent carboligase related to bio 99.85
TIGR00768277 rimK_fam alpha-L-glutamate ligases, RimK family. T 99.83
PRK10446300 ribosomal protein S6 modification protein; Provisi 99.82
PRK06849389 hypothetical protein; Provisional 99.82
TIGR02144280 LysX_arch Lysine biosynthesis enzyme LysX. The fam 99.8
PRK13277366 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribo 99.8
), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF01071">PF01071194 GARS_A: Phosphoribosylglycinamide synthetase, ATP- 99.79
COG1181317 DdlA D-alanine-D-alanine ligase and related ATP-gr 99.78
PF02655161 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 99.78
PRK13278358 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D 99.77
PF08443190 RimK: RimK-like ATP-grasp domain; InterPro: IPR013 99.76
KOG03701435 consensus Multifunctional pyrimidine synthesis pro 99.73
KOG0237 788 consensus Glycinamide ribonucleotide synthetase (G 99.72
COG0189318 RimK Glutathione synthase/Ribosomal protein S6 mod 99.64
PRK14016 727 cyanophycin synthetase; Provisional 99.61
TIGR03103547 trio_acet_GNAT GNAT-family acetyltransferase TIGR0 99.61
COG3919415 Predicted ATP-grasp enzyme [General function predi 99.57
TIGR02068 864 cya_phycin_syn cyanophycin synthetase. Cyanophycin 99.53
COG1821307 Predicted ATP-utilizing enzyme (ATP-grasp superfam 99.52
TIGR01435737 glu_cys_lig_rel glutamate--cysteine ligase/gamma-g 99.5
PRK02471752 bifunctional glutamate--cysteine ligase/glutathion 99.47
TIGR02291317 rimK_rel_E_lig alpha-L-glutamate ligase-related pr 99.31
PRK12458338 glutathione synthetase; Provisional 99.29
PLN02941328 inositol-tetrakisphosphate 1-kinase 99.28
PRK05246316 glutathione synthetase; Provisional 99.26
TIGR01380312 glut_syn glutathione synthetase, prokaryotic. This 99.24
PF14398262 ATPgrasp_YheCD: YheC/D like ATP-grasp 98.99
COG1759361 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofu 98.93
TIGR01016386 sucCoAbeta succinyl-CoA synthetase, beta subunit. 98.86
PF00289110 CPSase_L_chain: Carbamoyl-phosphate synthase L cha 98.8
PRK00696388 sucC succinyl-CoA synthetase subunit beta; Provisi 98.75
PF14397285 ATPgrasp_ST: Sugar-transfer associated ATP-grasp 98.6
PF02955173 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP 98.55
PF13549222 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A. 98.47
PF02750203 Synapsin_C: Synapsin, ATP binding domain; InterPro 97.99
PF03133292 TTL: Tubulin-tyrosine ligase family; InterPro: IPR 97.96
PRK14046392 malate--CoA ligase subunit beta; Provisional 97.9
PF05770307 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6- 97.81
PLN00124422 succinyl-CoA ligase [GDP-forming] subunit beta; Pr 97.73
PF14305239 ATPgrasp_TupA: TupA-like ATPgrasp 97.52
PF06973188 DUF1297: Domain of unknown function (DUF1297); Int 97.52
PLN02235423 ATP citrate (pro-S)-lyase 97.08
COG0045387 SucC Succinyl-CoA synthetase, beta subunit [Energy 96.96
PF08442202 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 96.78
KOG3895488 consensus Synaptic vesicle protein Synapsin [Signa 96.65
PF14243130 DUF4343: Domain of unknown function (DUF4343) 96.55
PF11379355 DUF3182: Protein of unknown function (DUF3182); In 95.2
KOG2156662 consensus Tubulin-tyrosine ligase-related protein 94.32
KOG2157497 consensus Predicted tubulin-tyrosine ligase [Postt 94.22
PF14403445 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 91.81
PF07065299 D123: D123; InterPro: IPR009772 This family contai 91.55
PRK08057248 cobalt-precorrin-6x reductase; Reviewed 80.44
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.5e-98  Score=752.08  Aligned_cols=361  Identities=56%  Similarity=0.940  Sum_probs=355.4

Q ss_pred             CCcEEEEecCcHHHHHHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCH-----------------------------
Q 013241           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI-----------------------------  120 (447)
Q Consensus        70 ~~~kvLianrgeia~ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i-----------------------------  120 (447)
                      ||+|||||||||||+||+|+|+++||+++++|+..|.+++|+++||++|.+                             
T Consensus         1 mf~KiLIANRGEIAcRVIRtar~lGi~tVAVYSdaDa~A~hV~~ADEAv~iGpapaaeSYL~~dkIi~Aa~~tGA~AIHP   80 (645)
T COG4770           1 MFSKILIANRGEIACRVIRTARDLGIRTVAVYSDADADALHVRMADEAVHIGPAPAAESYLDIDKIIDAARRTGAQAIHP   80 (645)
T ss_pred             CcceEEEeccchhhHHHHHHHHHcCCceEEEEecCCCCchhhhhcchhhhcCCCchhhhhccHHHHHHHHHHhCcccccC
Confidence            689999999999999999999999999999999999999999999999998                             


Q ss_pred             -------------------------------------------------------------HHHHHHhhhhCCcEEEEeC
Q 013241          121 -------------------------------------------------------------EEAVKLADELGFPVMIKAT  139 (447)
Q Consensus       121 -------------------------------------------------------------~e~~~~~~~ig~PvVvKP~  139 (447)
                                                                                   +++..+++++||||+||+.
T Consensus        81 GYGFLSENa~FA~a~~~aGlvfIGP~~~aI~aMGdK~~AK~l~~~AgVp~VPG~~g~~qd~~~~~~~A~eiGyPVlIKAs  160 (645)
T COG4770          81 GYGFLSENADFAQAVEDAGLVFIGPSAGAIRAMGDKIAAKKLAAEAGVPTVPGYHGPIQDAAELVAIAEEIGYPVLIKAS  160 (645)
T ss_pred             CccccccCHHHHHHHHHCCcEEECCCHHHHHHhccHHHHHHHHHHcCCCccCCCCCcccCHHHHHHHHHhcCCcEEEEec
Confidence                                                                         7788899999999999999


Q ss_pred             CCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeE
Q 013241          140 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLE  219 (447)
Q Consensus       140 ~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~  219 (447)
                      .|||||||+++++.+|+.++|+.++++++++||++.++||+|+..+|||++||++|++|+++++++||||+||+|||+++
T Consensus       161 aGGGGKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~PRHIEiQV~aD~HGNvv~LgERdCSlQRRhQKVIE  240 (645)
T COG4770         161 AGGGGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDKPRHIEIQVFADQHGNVVHLGERDCSLQRRHQKVIE  240 (645)
T ss_pred             cCCCCCceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCCCceEEEEEEecCCCCEEEeeccccchhhhcchhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEecCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCCC
Q 013241          220 EAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGK  299 (447)
Q Consensus       220 ~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~~  299 (447)
                      ++|+|.+++++++.|.+.++++++++||.|++||||++|.++.|||||||+|+|++||+||++||+||++||+++|.|++
T Consensus       241 EAPaP~l~~~~R~amg~aAv~~a~avgY~gAGTVEFivd~~~~f~FlEMNTRLQVEHPVTE~iTGiDLVewqiRVA~Gek  320 (645)
T COG4770         241 EAPAPFLTEETREAMGEAAVAAAKAVGYVGAGTVEFIVDADGNFYFLEMNTRLQVEHPVTELITGIDLVEWQIRVASGEK  320 (645)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHHhcCCCcCceEEEEEcCCCcEEEEEeecceeccccchhhhhhhHHHHHHHHHhcCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccccceeEEEEEEeeCCCCccccCCCCceeEEecCCCCcEEEeeeecCCcccCCCCCccceEEEEEcCCHHHHH
Q 013241          300 LRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAI  379 (447)
Q Consensus       300 l~~~~~~~~~~g~ai~~ri~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~lg~vi~~g~~~~eA~  379 (447)
                      |++.|.+++.+|||||+|||||||.++|.|++|+++.+.+|.++++|+|+++..|+.|+++||||++|+|+||.||++|+
T Consensus       321 L~~~Q~di~l~GhAiE~RiyAEDp~r~FLPs~G~l~~~~~P~~~~vRvDsGV~~G~~Is~~YDpMiAKLi~~G~dR~eAl  400 (645)
T COG4770         321 LPFTQDDIPLNGHAIEARIYAEDPARGFLPSTGRLTRYRPPAGPGVRVDSGVREGDEISPFYDPMIAKLIVHGADREEAL  400 (645)
T ss_pred             CCcccccccccceeEEEEEeccCcccCccCCCceeEeecCCCCCceecccCcccCCccccccchHHHHHhhcCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhccEEeccccCHHHHHHhcCCccccCCccccccccccchhccCC
Q 013241          380 ERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQELQAP  430 (447)
Q Consensus       380 ~~~~~al~~~~i~G~~tn~~~~~~~l~~~~f~~g~~~t~~~~~~~~~~~~~  430 (447)
                      +++.+||+++.|.|+.||++||++++.||+|+.|+.+|.||.++.+++.+|
T Consensus       401 ~rl~~AL~~~~v~Gi~tn~~Fl~al~~~~~F~~g~~~T~~i~r~~~~~~~~  451 (645)
T COG4770         401 DRLRRALAEFEVEGIATNIPFLRALMADPRFRGGDLDTGFIAREIEDLFAP  451 (645)
T ss_pred             HHHHHHHHhhEecCccccHHHHHHHhcCcccccCCCcceeeeecccccccC
Confidence            999999999999999999999999999999999999999999999887644

>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism] Back     alignment and domain information
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion] Back     alignment and domain information
>COG0439 AccC Biotin carboxylase [Lipid metabolism] Back     alignment and domain information
>PRK08654 pyruvate carboxylase subunit A; Validated Back     alignment and domain information
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion] Back     alignment and domain information
>TIGR01235 pyruv_carbox pyruvate carboxylase Back     alignment and domain information
>PRK08463 acetyl-CoA carboxylase subunit A; Validated Back     alignment and domain information
>PRK07178 pyruvate carboxylase subunit A; Validated Back     alignment and domain information
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional Back     alignment and domain information
>PRK12999 pyruvate carboxylase; Reviewed Back     alignment and domain information
>PRK05586 biotin carboxylase; Validated Back     alignment and domain information
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit Back     alignment and domain information
>PRK08462 biotin carboxylase; Validated Back     alignment and domain information
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated Back     alignment and domain information
>TIGR02712 urea_carbox urea carboxylase Back     alignment and domain information
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism] Back     alignment and domain information
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated Back     alignment and domain information
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below) Back     alignment and domain information
>PLN02948 phosphoribosylaminoimidazole carboxylase Back     alignment and domain information
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 Back     alignment and domain information
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed Back     alignment and domain information
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit Back     alignment and domain information
>PLN02735 carbamoyl-phosphate synthase Back     alignment and domain information
>PF02785 Biotin_carb_C: Biotin carboxylase C-terminal domain; InterPro: IPR005482 Acetyl-CoA carboxylase is found in all animals, plants, and bacteria and catalyzes the first committed step in fatty acid synthesis Back     alignment and domain information
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated Back     alignment and domain information
>PLN02735 carbamoyl-phosphate synthase Back     alignment and domain information
>smart00878 Biotin_carb_C Biotin carboxylase C-terminal domain Back     alignment and domain information
>PRK02186 argininosuccinate lyase; Provisional Back     alignment and domain information
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein Back     alignment and domain information
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>PRK07206 hypothetical protein; Provisional Back     alignment and domain information
>PRK13790 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>PLN02257 phosphoribosylamine--glycine ligase Back     alignment and domain information
>PRK00885 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK13789 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR00877 purD phosphoribosylamine--glycine ligase Back     alignment and domain information
>PRK06395 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit Back     alignment and domain information
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed Back     alignment and domain information
>PRK14569 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PRK06524 biotin carboxylase-like protein; Validated Back     alignment and domain information
>PRK05784 phosphoribosylamine--glycine ligase; Provisional Back     alignment and domain information
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK14570 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed Back     alignment and domain information
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional Back     alignment and domain information
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A Back     alignment and domain information
>PRK14572 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6 Back     alignment and domain information
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional Back     alignment and domain information
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis Back     alignment and domain information
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed Back     alignment and domain information
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase Back     alignment and domain information
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional Back     alignment and domain information
>PRK14571 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism] Back     alignment and domain information
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon Back     alignment and domain information
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only] Back     alignment and domain information
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only] Back     alignment and domain information
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family Back     alignment and domain information
>PRK10446 ribosomal protein S6 modification protein; Provisional Back     alignment and domain information
>PRK06849 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX Back     alignment and domain information
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional Back     alignment and domain information
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6 Back     alignment and domain information
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule [] Back     alignment and domain information
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional Back     alignment and domain information
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK [] Back     alignment and domain information
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only] Back     alignment and domain information
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism] Back     alignment and domain information
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK14016 cyanophycin synthetase; Provisional Back     alignment and domain information
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103 Back     alignment and domain information
>COG3919 Predicted ATP-grasp enzyme [General function prediction only] Back     alignment and domain information
>TIGR02068 cya_phycin_syn cyanophycin synthetase Back     alignment and domain information
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only] Back     alignment and domain information
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type Back     alignment and domain information
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional Back     alignment and domain information
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein Back     alignment and domain information
>PRK12458 glutathione synthetase; Provisional Back     alignment and domain information
>PLN02941 inositol-tetrakisphosphate 1-kinase Back     alignment and domain information
>PRK05246 glutathione synthetase; Provisional Back     alignment and domain information
>TIGR01380 glut_syn glutathione synthetase, prokaryotic Back     alignment and domain information
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp Back     alignment and domain information
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit Back     alignment and domain information
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below) Back     alignment and domain information
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional Back     alignment and domain information
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp Back     alignment and domain information
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6 Back     alignment and domain information
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A Back     alignment and domain information
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments) Back     alignment and domain information
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed Back     alignment and domain information
>PRK14046 malate--CoA ligase subunit beta; Provisional Back     alignment and domain information
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase Back     alignment and domain information
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional Back     alignment and domain information
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp Back     alignment and domain information
>PF06973 DUF1297: Domain of unknown function (DUF1297); InterPro: IPR009720 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH [] Back     alignment and domain information
>PLN02235 ATP citrate (pro-S)-lyase Back     alignment and domain information
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion] Back     alignment and domain information
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule [] Back     alignment and domain information
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14243 DUF4343: Domain of unknown function (DUF4343) Back     alignment and domain information
>PF11379 DUF3182: Protein of unknown function (DUF3182); InterPro: IPR021519 This family of proteins with unknown function appears to be restricted to Proteobacteria Back     alignment and domain information
>KOG2156 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2157 consensus Predicted tubulin-tyrosine ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2 Back     alignment and domain information
>PF07065 D123: D123; InterPro: IPR009772 This family contains a number of eukaryotic D123 proteins approximately 330 residues long Back     alignment and domain information
>PRK08057 cobalt-precorrin-6x reductase; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query447
2vpq_A451 Crystal Structure Of Biotin Carboxylase From S. Aur 3e-89
2gpw_A469 Crystal Structure Of The Biotin Carboxylase Subunit 2e-84
1ulz_A451 Crystal Structure Of The Biotin Carboxylase Subunit 2e-84
1bnc_A449 Three-Dimensional Structure Of The Biotin Carboxyla 4e-84
3jzf_A486 Crystal Structure Of Biotin Carboxylase From E. Col 4e-84
3g8c_A444 Crystal Stucture Of Biotin Carboxylase In Complex W 4e-84
2gps_A469 Crystal Structure Of The Biotin Carboxylase Subunit 4e-84
3rup_B452 Crystal Structure Of E.Coli Biotin Carboxylase In C 4e-84
3rv4_A452 Crystal Structure Of E.Coli Biotin Carboxylase R16e 5e-84
1dv2_A452 The Structure Of Biotin Carboxylase, Mutant E288k, 1e-83
3g8d_A444 Crystal Structure Of The Biotin Carboxylase Subunit 2e-83
2vqd_A464 Crystal Structure Of Biotin Carboxylase From Pseudo 1e-82
3ouz_A446 Crystal Structure Of Biotin Carboxylase-Adp Complex 9e-80
3n6r_A 681 Crystal Structure Of The Holoenzyme Of Propionyl-co 8e-77
3u9s_A 655 Crystal Structure Of P. Aeruginosa 3-methylcrotonyl 1e-75
2dzd_A461 Crystal Structure Of The Biotin Carboxylase Domain 1e-74
3tw7_A 1165 Structure Of Rhizobium Etli Pyruvate Carboxylase T8 2e-74
2qf7_A 1165 Crystal Structure Of A Complete Multifunctional Pyr 2e-74
4hnt_A 1173 Crystal Structure Of F403a Mutant Of S. Aureus Pyru 2e-71
3hb9_A 1150 Crystal Structure Of S. Aureus Pyruvate Carboxylase 4e-71
3ho8_A 1150 Crystal Structure Of S. Aureus Pyruvate Carboxylase 4e-71
3hbl_A 1150 Crystal Structure Of S. Aureus Pyruvate Carboxylase 4e-71
3bg5_A 1173 Crystal Structure Of Staphylococcus Aureus Pyruvate 4e-71
4hnv_A 1173 Crystal Structure Of R54e Mutant Of S. Aureus Pyruv 4e-71
4hnu_A 1173 Crystal Structure Of K442e Mutant Of S. Aureus Pyru 9e-71
3va7_A 1236 Crystal Structure Of The Kluyveromyces Lactis Urea 2e-62
2yl2_A540 Crystal Structure Of Human Acetyl-Coa Carboxylase 1 1e-53
2hjw_A573 Crystal Structure Of The Bc Domain Of Acc2 Length = 3e-53
3jrw_A587 Phosphorylated Bc Domain Of Acc2 Length = 587 4e-53
3jrx_A587 Crystal Structure Of The Bc Domain Of Acc2 In Compl 4e-53
3gid_A540 The Biotin Carboxylase (Bc) Domain Of Human Acetyl- 4e-53
1w93_A553 Crystal Structure Of Biotin Carboxylase Domain Of A 2e-46
1w96_A554 Crystal Structure Of Biotin Carboxylase Domain Of A 2e-46
2cqy_A108 Solution Structure Of B Domain From Human Propionyl 2e-11
1a9x_A1073 Carbamoyl Phosphate Synthetase: Caught In The Act O 2e-04
>pdb|2VPQ|A Chain A, Crystal Structure Of Biotin Carboxylase From S. Aureus Complexed With Amppnp Length = 451 Back     alignment and structure 
Iteration: 1

 Score =  325 bits (834), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 158/305 (51%), Positives = 221/305 (72%), Gaps = 1/305 (0%)
Query: 120 IEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLE 179
           + EA K+A ++G+PV+IKATAGGGG+G+R+A++  E     +  + EA  AFGN G+Y+E
Sbjct: 140 VSEAKKIAKKIGYPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYME 199
Query: 180 KYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDXXX 239
           K+++N RHIE Q++ D YGNV+H GERDC+IQRR QKL+EEAPSP L  E R+ MG+   
Sbjct: 200 KFIENFRHIEIQIVGDSYGNVIHLGERDCTIQRRMQKLVEEAPSPILDDETRREMGNAAV 259
Query: 240 XXXXSIGYIGVGTVEFLLD-ERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGG 298
               ++ Y   GT+EF+ D     FYFMEMNTRIQVEHPVTEM++ +DL++ Q+ VAMG 
Sbjct: 260 RAAKAVNYENAGTIEFIYDLNDNKFYFMEMNTRIQVEHPVTEMVTGIDLVKLQLQVAMGD 319
Query: 299 KLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVP 358
            L YKQEDI L GH+IE RINAE+P+KNF P PG+I  YL  GG  VR++S  Y +Y +P
Sbjct: 320 VLPYKQEDIKLTGHAIEFRINAENPYKNFMPSPGKIEQYLAPGGYGVRIESACYTNYTIP 379
Query: 359 PSYDSLLGKLIVWAPTREKAIERMKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTA 418
           P YDS++ KLI+  PTR++AI    RAL++ ++ G+ TTI +H  +L+ + F++GK +T 
Sbjct: 380 PYYDSMVAKLIIHEPTRDEAIMAGIRALSEFVVLGIDTTIPFHIKLLNNDIFRSGKFNTN 439
Query: 419 FIPKH 423
           F+ ++
Sbjct: 440 FLEQN 444
>pdb|2GPW|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, F363a Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli. Length = 469 Back     alignment and structure
>pdb|1ULZ|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit Of Pyruvate Carboxylase Length = 451 Back     alignment and structure
>pdb|1BNC|A Chain A, Three-Dimensional Structure Of The Biotin Carboxylase Subunit Of Acetyl-Coa Carboxylase Length = 449 Back     alignment and structure
>pdb|3JZF|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In Complex With Benzimidazoles Series Length = 486 Back     alignment and structure
>pdb|3G8C|A Chain A, Crystal Stucture Of Biotin Carboxylase In Complex With Biotin, Bicarbonate, Adp And Mg Ion Length = 444 Back     alignment and structure
>pdb|2GPS|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E23r Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli. Length = 469 Back     alignment and structure
>pdb|1DV2|A Chain A, The Structure Of Biotin Carboxylase, Mutant E288k, Complexed With Atp Length = 452 Back     alignment and structure
>pdb|3G8D|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E296a Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli Length = 444 Back     alignment and structure
>pdb|2VQD|A Chain A, Crystal Structure Of Biotin Carboxylase From Pseudomonas Aeruginosa Complexed With Ampcp Length = 464 Back     alignment and structure
>pdb|3OUZ|A Chain A, Crystal Structure Of Biotin Carboxylase-Adp Complex From Campylobacter Jejuni Length = 446 Back     alignment and structure
>pdb|3N6R|A Chain A, Crystal Structure Of The Holoenzyme Of Propionyl-coa Carboxylase (pcc) Length = 681 Back     alignment and structure
>pdb|3U9S|A Chain A, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex Length = 655 Back     alignment and structure
>pdb|2DZD|A Chain A, Crystal Structure Of The Biotin Carboxylase Domain Of Pyruvate Carboxylase Length = 461 Back     alignment and structure
>pdb|3TW7|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a Crystallized Without Acetyl Coenzyme-A Length = 1165 Back     alignment and structure
>pdb|2QF7|A Chain A, Crystal Structure Of A Complete Multifunctional Pyruvate Carboxylase From Rhizobium Etli Length = 1165 Back     alignment and structure
>pdb|4HNT|A Chain A, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate Carboxylase Length = 1173 Back     alignment and structure
>pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t Mutant Length = 1150 Back     alignment and structure
>pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In Complex With Coenzyme A Length = 1150 Back     alignment and structure
>pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a Mutant Length = 1150 Back     alignment and structure
>pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate Carboxylase Length = 1173 Back     alignment and structure
>pdb|4HNV|A Chain A, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate Carboxylase Length = 1173 Back     alignment and structure
>pdb|4HNU|A Chain A, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate Carboxylase Length = 1173 Back     alignment and structure
>pdb|3VA7|A Chain A, Crystal Structure Of The Kluyveromyces Lactis Urea Carboxylase Length = 1236 Back     alignment and structure
>pdb|2YL2|A Chain A, Crystal Structure Of Human Acetyl-Coa Carboxylase 1, Biotin Carboxylase (Bc) Domain Length = 540 Back     alignment and structure
>pdb|2HJW|A Chain A, Crystal Structure Of The Bc Domain Of Acc2 Length = 573 Back     alignment and structure
>pdb|3JRW|A Chain A, Phosphorylated Bc Domain Of Acc2 Length = 587 Back     alignment and structure
>pdb|3JRX|A Chain A, Crystal Structure Of The Bc Domain Of Acc2 In Complex With Soraphen A Length = 587 Back     alignment and structure
>pdb|3GID|A Chain A, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa Carboxylase 2 (Acc2) In Complex With Soraphen A Length = 540 Back     alignment and structure
>pdb|1W93|A Chain A, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl- Coenzyme A Carboxylase From Saccharomyces Cerevisiae Length = 553 Back     alignment and structure
>pdb|1W96|A Chain A, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl- Coenzyme A Carboxylase From Saccharomyces Cerevisiae In Complex With Soraphen A Length = 554 Back     alignment and structure
>pdb|2CQY|A Chain A, Solution Structure Of B Domain From Human Propionyl-Coa Carboxylase Alpha Subunit Length = 108 Back     alignment and structure
>pdb|1A9X|A Chain A, Carbamoyl Phosphate Synthetase: Caught In The Act Of Glutamine Hydrolysis Length = 1073 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query447
1ulz_A451 Pyruvate carboxylase N-terminal domain; biotin car 0.0
1ulz_A451 Pyruvate carboxylase N-terminal domain; biotin car 6e-28
2vpq_A451 Acetyl-COA carboxylase; bacteria, ATP-grAsp domain 0.0
2vpq_A451 Acetyl-COA carboxylase; bacteria, ATP-grAsp domain 6e-28
2w70_A449 Biotin carboxylase; ligase, ATP-binding, fatty aci 0.0
2w70_A449 Biotin carboxylase; ligase, ATP-binding, fatty aci 8e-28
3ouz_A446 Biotin carboxylase; structural genomics, center fo 0.0
3ouz_A446 Biotin carboxylase; structural genomics, center fo 6e-28
2dzd_A461 Pyruvate carboxylase; biotin carboxylase, ligase; 0.0
2dzd_A461 Pyruvate carboxylase; biotin carboxylase, ligase; 3e-25
3jrx_A587 Acetyl-COA carboxylase 2; BC domain, soraphen A, a 0.0
3jrx_A 587 Acetyl-COA carboxylase 2; BC domain, soraphen A, a 7e-20
3glk_A540 Acetyl-COA carboxylase 2; ATP binding, alternative 0.0
3glk_A 540 Acetyl-COA carboxylase 2; ATP binding, alternative 7e-20
3hbl_A 1150 Pyruvate carboxylase; TIM barrel, ligase; HET: BTI 0.0
3hbl_A 1150 Pyruvate carboxylase; TIM barrel, ligase; HET: BTI 2e-23
2qf7_A 1165 Pyruvate carboxylase protein; multi-domain, multi- 0.0
2qf7_A 1165 Pyruvate carboxylase protein; multi-domain, multi- 1e-23
3n6r_A 681 Propionyl-COA carboxylase, alpha subunit; protein 0.0
3n6r_A 681 Propionyl-COA carboxylase, alpha subunit; protein 8e-25
1w96_A554 ACC, acetyl-coenzyme A carboxylase; ligase, obesit 0.0
1w96_A 554 ACC, acetyl-coenzyme A carboxylase; ligase, obesit 9e-22
3va7_A 1236 KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A 1e-176
3va7_A 1236 KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A 1e-24
3u9t_A 675 MCC alpha, methylcrotonyl-COA carboxylase, alpha-s 1e-174
3u9t_A 675 MCC alpha, methylcrotonyl-COA carboxylase, alpha-s 2e-23
2cqy_A108 Propionyl-COA carboxylase alpha chain, mitochondri 2e-40
4dim_A403 Phosphoribosylglycinamide synthetase; structural g 2e-21
3vmm_A474 Alanine-anticapsin ligase BACD; ATP-grAsp domain, 6e-19
2pn1_A331 Carbamoylphosphate synthase large subunit; ZP_0053 1e-15
3df7_A305 Putative ATP-grAsp superfamily protein; putative p 4e-12
3k5i_A403 Phosphoribosyl-aminoimidazole carboxylase; purine 1e-11
4e4t_A419 Phosphoribosylaminoimidazole carboxylase, ATPase; 2e-11
3aw8_A369 PURK, phosphoribosylaminoimidazole carboxylase, AT 2e-11
4eg0_A317 D-alanine--D-alanine ligase; structural genomics, 4e-11
3q2o_A389 Phosphoribosylaminoimidazole carboxylase, ATPase; 2e-10
2fb9_A322 D-alanine:D-alanine ligase; 1.90A {Thermus caldoph 7e-10
1uc8_A280 LYSX, lysine biosynthesis enzyme; alpha-aminoadipa 8e-10
1iow_A306 DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen pho 9e-10
1ehi_A377 LMDDL2, D-alanine:D-lactate ligase; ATP-binding. g 1e-09
2r85_A334 PURP protein PF1517; ATP-grAsp superfamily, unknow 4e-09
3ax6_A380 Phosphoribosylaminoimidazole carboxylase, ATPase; 5e-09
3r5x_A307 D-alanine--D-alanine ligase; alpha-beta structure, 1e-08
3orq_A377 N5-carboxyaminoimidazole ribonucleotide synthetas; 1e-08
1kjq_A391 GART 2, phosphoribosylglycinamide formyltransferas 3e-08
2dwc_A433 PH0318, 433AA long hypothetical phosphoribosylglyc 4e-08
2p0a_A344 Synapsin-3, synapsin III; neurotransmitter release 4e-08
1e4e_A343 Vancomycin/teicoplanin A-type resistance protein; 6e-08
2pvp_A367 D-alanine-D-alanine ligase; 2.40A {Helicobacter py 7e-08
2z04_A365 Phosphoribosylaminoimidazole carboxylase ATPase su 1e-07
2i87_A364 D-alanine-D-alanine ligase; APO; 2.00A {Staphyloco 1e-07
1i7n_A309 Synapsin II; synapse, phosphorylation, neuropeptid 2e-07
3eth_A355 Phosphoribosylaminoimidazole carboxylase ATPase su 2e-07
3k3p_A383 D-alanine--D-alanine ligase; D-alanyl-alanine synt 2e-07
3i12_A364 D-alanine-D-alanine ligase A; D-alanyl-alanine syn 4e-07
2r7k_A361 5-formaminoimidazole-4-carboxamide-1-(beta)-D- rib 6e-07
3se7_A346 VANA; alpha-beta structure, D-alanine-D-lactate li 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
3e5n_A386 D-alanine-D-alanine ligase A; bacterial blight; 2. 4e-06
3tqt_A372 D-alanine--D-alanine ligase; cell envelope; 1.88A 2e-05
1a9x_A1073 Carbamoyl phosphate synthetase (large chain); amid 6e-05
1a9x_A 1073 Carbamoyl phosphate synthetase (large chain); amid 3e-04
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Length = 451 Back     alignment and structure
 Score =  603 bits (1558), Expect = 0.0
 Identities = 165/350 (47%), Positives = 223/350 (63%), Gaps = 22/350 (6%)

Query: 87  IRTAHEMGIPCV-----AVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAG 141
                + G+P V      + S                 +EEA  LA E+G+PV++KATAG
Sbjct: 119 KEVMKKAGVPVVPGSDGVLKS-----------------LEEAKALAREIGYPVLLKATAG 161

Query: 142 GGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVV 201
           GGGRG+R+ +  +E VK  +QA  EA  AFG   + LEK+++NP+HIE+QVL DK+GNV+
Sbjct: 162 GGGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENPKHIEYQVLGDKHGNVI 221

Query: 202 HFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERG 261
           H GERDCSIQRRNQKL+E APS  LTPE R+  G+    AA  IGY   GT+EF+ D+ G
Sbjct: 222 HLGERDCSIQRRNQKLVEIAPSLILTPEKREYYGNIVTKAAKEIGYYNAGTMEFIADQEG 281

Query: 262 SFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINAE 321
           + YF+EMNTRIQVEHPV+EM++ +D+++ QI +A G  L  KQED+   G++IECRINAE
Sbjct: 282 NLYFIEMNTRIQVEHPVSEMVTGIDIVKWQIKIAAGEPLTIKQEDVKFNGYAIECRINAE 341

Query: 322 DPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIER 381
           DP KNF P    I  Y   GG  +R++      + V P YDS++ KLI WAPT ++A+ER
Sbjct: 342 DPKKNFAPSTRVIERYYVPGGFGIRVEHAAARGFEVTPYYDSMIAKLITWAPTWDEAVER 401

Query: 382 MKRALNDTIITGVPTTIEYHKLILDVEDFKNGKVDTAFIPKHEQELQAPQ 431
           M+ AL    ITGV TTI     I+  +DFK GK  T ++ +H +  +  +
Sbjct: 402 MRAALETYEITGVKTTIPLLINIMKEKDFKAGKFTTKYLEEHPEVFEYEE 451
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Length = 451 Back     alignment and structure
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} Length = 451 Back     alignment and structure
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} Length = 451 Back     alignment and structure
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ... Length = 449 Back     alignment and structure
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ... Length = 449 Back     alignment and structure
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A* Length = 446 Back     alignment and structure
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A* Length = 446 Back     alignment and structure
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans} Length = 461 Back     alignment and structure
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans} Length = 461 Back     alignment and structure
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A* Length = 587 Back     alignment and structure
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A* Length = 587 Back     alignment and structure
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A Length = 540 Back     alignment and structure
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A Length = 540 Back     alignment and structure
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A* Length = 1150 Back     alignment and structure
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A* Length = 1150 Back     alignment and structure
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* Length = 1165 Back     alignment and structure
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* Length = 1165 Back     alignment and structure
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Length = 681 Back     alignment and structure
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Length = 681 Back     alignment and structure
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A Length = 554 Back     alignment and structure
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A Length = 554 Back     alignment and structure
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Length = 1236 Back     alignment and structure
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Length = 1236 Back     alignment and structure
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 108 Back     alignment and structure
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii} Length = 403 Back     alignment and structure
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis} Length = 474 Back     alignment and structure
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum} Length = 331 Back     alignment and structure
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus} Length = 305 Back     alignment and structure
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* Length = 403 Back     alignment and structure
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A Length = 419 Back     alignment and structure
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus} Length = 369 Back     alignment and structure
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A Length = 317 Back     alignment and structure
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* Length = 389 Back     alignment and structure
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A* Length = 322 Back     alignment and structure
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A* Length = 280 Back     alignment and structure
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A* Length = 306 Back     alignment and structure
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1 Length = 377 Back     alignment and structure
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A* Length = 334 Back     alignment and structure
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} Length = 380 Back     alignment and structure
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A* Length = 307 Back     alignment and structure
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A Length = 377 Back     alignment and structure
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* Length = 391 Back     alignment and structure
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A* Length = 433 Back     alignment and structure
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens} Length = 344 Back     alignment and structure
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B* Length = 343 Back     alignment and structure
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori} Length = 367 Back     alignment and structure
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A* Length = 364 Back     alignment and structure
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A* Length = 309 Back     alignment and structure
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A* Length = 355 Back     alignment and structure
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans} Length = 383 Back     alignment and structure
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A* Length = 364 Back     alignment and structure
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A* Length = 361 Back     alignment and structure
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {} Length = 346 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A* Length = 386 Back     alignment and structure
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii} Length = 372 Back     alignment and structure
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Length = 1073 Back     alignment and structure
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Length = 1073 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query447
3jrx_A587 Acetyl-COA carboxylase 2; BC domain, soraphen A, a 100.0
3glk_A540 Acetyl-COA carboxylase 2; ATP binding, alternative 100.0
3u9t_A 675 MCC alpha, methylcrotonyl-COA carboxylase, alpha-s 100.0
3n6r_A 681 Propionyl-COA carboxylase, alpha subunit; protein 100.0
3ouz_A446 Biotin carboxylase; structural genomics, center fo 100.0
3hbl_A 1150 Pyruvate carboxylase; TIM barrel, ligase; HET: BTI 100.0
3va7_A 1236 KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A 100.0
2qf7_A 1165 Pyruvate carboxylase protein; multi-domain, multi- 100.0
2vpq_A451 Acetyl-COA carboxylase; bacteria, ATP-grAsp domain 100.0
1ulz_A451 Pyruvate carboxylase N-terminal domain; biotin car 100.0
2dzd_A461 Pyruvate carboxylase; biotin carboxylase, ligase; 100.0
2w70_A449 Biotin carboxylase; ligase, ATP-binding, fatty aci 100.0
1w96_A554 ACC, acetyl-coenzyme A carboxylase; ligase, obesit 100.0
4dim_A403 Phosphoribosylglycinamide synthetase; structural g 100.0
3vot_A425 L-amino acid ligase, BL00235; ATP-grAsp motif, ATP 100.0
1a9x_A 1073 Carbamoyl phosphate synthetase (large chain); amid 100.0
4ffl_A363 PYLC; amino acid, biosynthesis of pyrrolysine, iso 100.0
4e4t_A419 Phosphoribosylaminoimidazole carboxylase, ATPase; 100.0
3k5i_A403 Phosphoribosyl-aminoimidazole carboxylase; purine 100.0
1kjq_A391 GART 2, phosphoribosylglycinamide formyltransferas 100.0
2dwc_A433 PH0318, 433AA long hypothetical phosphoribosylglyc 100.0
3aw8_A369 PURK, phosphoribosylaminoimidazole carboxylase, AT 100.0
3eth_A355 Phosphoribosylaminoimidazole carboxylase ATPase su 100.0
2z04_A365 Phosphoribosylaminoimidazole carboxylase ATPase su 100.0
3q2o_A389 Phosphoribosylaminoimidazole carboxylase, ATPase; 100.0
3ax6_A380 Phosphoribosylaminoimidazole carboxylase, ATPase; 100.0
3vmm_A474 Alanine-anticapsin ligase BACD; ATP-grAsp domain, 100.0
1vkz_A412 Phosphoribosylamine--glycine ligase; TM1250, struc 100.0
3orq_A377 N5-carboxyaminoimidazole ribonucleotide synthetas; 100.0
2yw2_A424 Phosphoribosylamine--glycine ligase; glycinamide r 100.0
2ip4_A417 PURD, phosphoribosylamine--glycine ligase; GAR syn 99.98
3mjf_A431 Phosphoribosylamine--glycine ligase; structural ge 99.97
2qk4_A452 Trifunctional purine biosynthetic protein adenosi; 99.97
3lp8_A442 Phosphoribosylamine-glycine ligase; ssgcid, NIH, n 99.97
2yrx_A451 Phosphoribosylglycinamide synthetase; glycinamide 99.97
2xcl_A422 Phosphoribosylamine--glycine ligase; GAR-SYN, ATP- 99.96
1a9x_A1073 Carbamoyl phosphate synthetase (large chain); amid 99.95
4fu0_A357 D-alanine--D-alanine ligase 7; vancomycin resistan 99.94
3e5n_A386 D-alanine-D-alanine ligase A; bacterial blight; 2. 99.93
3i12_A364 D-alanine-D-alanine ligase A; D-alanyl-alanine syn 99.93
3tqt_A372 D-alanine--D-alanine ligase; cell envelope; 1.88A 99.93
3k3p_A383 D-alanine--D-alanine ligase; D-alanyl-alanine synt 99.93
1ehi_A377 LMDDL2, D-alanine:D-lactate ligase; ATP-binding. g 99.92
3lwb_A373 D-alanine--D-alanine ligase; DDL, D-alanyl--D-alan 99.92
2i87_A364 D-alanine-D-alanine ligase; APO; 2.00A {Staphyloco 99.92
4eg0_A317 D-alanine--D-alanine ligase; structural genomics, 99.92
2pn1_A331 Carbamoylphosphate synthase large subunit; ZP_0053 99.9
2fb9_A322 D-alanine:D-alanine ligase; 1.90A {Thermus caldoph 99.9
3r5x_A307 D-alanine--D-alanine ligase; alpha-beta structure, 99.9
1e4e_A343 Vancomycin/teicoplanin A-type resistance protein; 99.9
3se7_A346 VANA; alpha-beta structure, D-alanine-D-lactate li 99.9
1iow_A306 DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen pho 99.9
2pvp_A367 D-alanine-D-alanine ligase; 2.40A {Helicobacter py 99.88
1uc8_A280 LYSX, lysine biosynthesis enzyme; alpha-aminoadipa 99.87
3df7_A305 Putative ATP-grAsp superfamily protein; putative p 99.83
2r85_A334 PURP protein PF1517; ATP-grAsp superfamily, unknow 99.82
2r7k_A361 5-formaminoimidazole-4-carboxamide-1-(beta)-D- rib 99.76
1wr2_A238 Hypothetical protein PH1789; structural genomics, 99.73
2pbz_A320 Hypothetical protein; NYSGXRC, PSI-II, IMP biosynt 99.72
3ln7_A757 Glutathione biosynthesis bifunctional protein GSH; 99.68
3ln6_A750 Glutathione biosynthesis bifunctional protein GSH; 99.65
1i7n_A309 Synapsin II; synapse, phosphorylation, neuropeptid 99.65
2p0a_A344 Synapsin-3, synapsin III; neurotransmitter release 99.64
1pk8_A422 RAT synapsin I; ATP binding, ATP grAsp, calcium (I 99.64
1gsa_A316 Glutathione synthetase; ligase; HET: ADP GSH; 2.00 99.64
1z2n_X324 Inositol 1,3,4-trisphosphate 5/6-kinase; inositol 99.63
2cqy_A108 Propionyl-COA carboxylase alpha chain, mitochondri 99.5
2q7d_A346 Inositol-tetrakisphosphate 1-kinase; inositol kina 99.39
2fp4_B395 Succinyl-COA ligase [GDP-forming] beta-chain, mito 99.29
2nu8_B388 SCS-beta, succinyl-COA synthetase beta chain; citr 99.25
3t7a_A330 Inositol pyrophosphate kinase; ATP-grAsp fold, tra 98.91
3ufx_B397 Succinyl-COA synthetase beta subunit; ATP-grAsp fo 98.78
3tig_A380 TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Si 98.27
3mwd_A425 ATP-citrate synthase; ATP-grAsp, phosphohistidine, 96.72
3pff_A 829 ATP-citrate synthase; phosphohistidine, organic ac 96.13
3n6x_A474 Putative glutathionylspermidine synthase; domain o 89.95
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A* Back     alignment and structure
Probab=100.00  E-value=4.9e-73  Score=602.17  Aligned_cols=358  Identities=38%  Similarity=0.598  Sum_probs=305.8

Q ss_pred             ccCCcEEEEecCcHHHHHHHHHHHHc---------CCCeeEEEeccC--hhhHHHHHhccccCH----------------
Q 013241           68 TCRQEKILVANRGEIAVRVIRTAHEM---------GIPCVAVYSTID--KDALHVKLADESVCI----------------  120 (447)
Q Consensus        68 ~~~~~kvLianrgeia~ri~r~~~~l---------Gi~~vav~~~~d--k~~~~~~lad~~v~i----------------  120 (447)
                      .+||+|||||||||+|+||+|+|+++         |+.++++++..|  +++++.++||+.+++                
T Consensus        53 ~~~~~kvLIanrGeiA~riira~r~lG~e~f~~e~Gi~tVav~s~~D~~~~a~~~~~ADe~v~i~~~~~~~syld~~~Il  132 (587)
T 3jrx_A           53 DRVIEKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPVPGGPNNNNYANVELIV  132 (587)
T ss_dssp             CCCCCEEEECCCHHHHHHHHHHHHHHHHHHHSCTTSSEEEEEECHHHHHTTCHHHHHSSEEEECCCSSGGGTTTCHHHHH
T ss_pred             CcccCEEEEECChHHHHHHHHHHHHhhhccccccCCceEEEEecccccCcCChhhHhCCEEEEeCCCCccccccCHHHHH
Confidence            46799999999999999999999987         899999999777  889999999987654                


Q ss_pred             -------------------------------------------------------------------H------------
Q 013241          121 -------------------------------------------------------------------E------------  121 (447)
Q Consensus       121 -------------------------------------------------------------------~------------  121 (447)
                                                                                         .            
T Consensus       133 ~~a~~~~vdaV~pG~GflsEn~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~ak~ll~~aGVPvpp~~~~~l~~~~~~~~~  212 (587)
T 3jrx_A          133 DIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDL  212 (587)
T ss_dssp             HHHHHTTCSEEECCSSTTTTCTHHHHHHHTTTCEESSCCHHHHHHHCSHHHHHHHHHHTTCCBCCBTTTTCCCCC-----
T ss_pred             HHHHHhCCCEEEeCCCccccCHHHHHHHHHCCCCeeCCCHHHHHHhCCHHHHHHHHHHcCCCCCCeeccccccccccccc
Confidence                                                                               2            


Q ss_pred             ----------------------HHHHHhhhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEe
Q 013241          122 ----------------------EAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLE  179 (447)
Q Consensus       122 ----------------------e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvE  179 (447)
                                            ++.++++++|||+||||..|+||+||++|++.+|+.++++.+..++    .+..++||
T Consensus       213 ~~~~~~~~~~~~~~~~~v~s~eea~~~a~~iGyPvVVKp~~GgGGkGv~iV~s~eEL~~a~~~a~~~~----~~~~vlVE  288 (587)
T 3jrx_A          213 QQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEI----PGSPIFLM  288 (587)
T ss_dssp             -CCCCCCCCHHHHHTTSCCSHHHHHHHHHHHCSSEEEEETTCCSSSSEEEECSTTTHHHHHHHHHHHS----TTCCEEEE
T ss_pred             ccccccccchhhccccccCCHHHHHHHHHhcCCeEEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHhhc----cCCCEEEE
Confidence                                  2345567899999999999999999999999999999999887663    35789999


Q ss_pred             eccCCCceEEEEEEEeCCCcEEEEeeeeeccccccceeeEecCCCCCCHHHHHHHHHHHHHHHHHcCCccEeEEEEEEec
Q 013241          180 KYVQNPRHIEFQVLADKYGNVVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDE  259 (447)
Q Consensus       180 efI~G~~ei~v~vl~d~~g~vv~l~~r~~s~~~~~~k~~~~~P~~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf~~d~  259 (447)
                      |||+|++|++|++++|++|+++++++++|+++++++|+++++|++.++++++++|.+.+.++++++||+|++++||++|+
T Consensus       289 eyI~g~rei~V~vl~D~~G~vv~l~~rd~siqrr~qk~ie~aPa~~l~~~~~~~i~~~A~~~a~alGy~G~~~VEfl~d~  368 (587)
T 3jrx_A          289 KLAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFMEQCAIRLAKTVGYVSAGTVEYLYSQ  368 (587)
T ss_dssp             ECCCSCEEEEEEEEECSSSCEEEEEEEEEEEESSSCEEEEEESCCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEECS
T ss_pred             EecCCCcEEEEEEEEcCCCCEEEEeeeeccccccccceeEecCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeC
Confidence            99999999999999999999999999999999999999999999988999999999999999999999999999999998


Q ss_pred             CCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCCCCC--------------------CCccc--cccceeEEEEE
Q 013241          260 RGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLR--------------------YKQED--IVLQGHSIECR  317 (447)
Q Consensus       260 ~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~~l~--------------------~~~~~--~~~~g~ai~~r  317 (447)
                      +|++||+|||||+|++|+++|+++|+|++++++++++|++++                    +.+.+  +.++||||+||
T Consensus       369 dG~~yflEINpRl~~e~~vte~~tGvdlv~~~lria~G~pL~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~ghaie~R  448 (587)
T 3jrx_A          369 DGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMGVPLHRLKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAAR  448 (587)
T ss_dssp             SSCEEEEEEESSCCTTHHHHHHHHTCCHHHHHHHHHTTCCGGGCHHHHHHTTCCTTCCCCCCSSSCSSCCCCCSEEEEEE
T ss_pred             CCCEEEEEEeCCCCCccceeccccCCCHHHHHHHHHCCCCcccchhcccccccccccccccccccccccCCCCceEEEEe
Confidence            899999999999999999999999999999999999999986                    22222  56789999999


Q ss_pred             EeeCCCCccccCCCCceeEEecCCCCcEEEeeeecCCcccCCCCCccceEEEEEcCCHHHHHHHHHHhhhccEEec-ccc
Q 013241          318 INAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRALNDTIITG-VPT  396 (447)
Q Consensus       318 i~ae~p~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~lg~vi~~g~~~~eA~~~~~~al~~~~i~G-~~t  396 (447)
                      ||||||..+|.|++|+|+.+.+|.+++||....+..+..|+++||||+||||+||+||++|+++|.+||+++.|+| ++|
T Consensus       449 i~aedp~~~f~p~~G~i~~~~~~~~~~v~~~~~~~~~~~~~~~yd~~~~k~i~~g~~r~~a~~~~~~al~~~~i~g~~~t  528 (587)
T 3jrx_A          449 ITSENPDEGFKPSSGTVQELNFRSSKNVWGYFSVAATGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDFRT  528 (587)
T ss_dssp             EEC----------CCCCEEEECSSCTTEEEEECCC----------CCEEEEEEEESSHHHHHHHHHHHHHHHHHSSTTSS
T ss_pred             ecccCccccCCCCCcEEEEEEeCCCCceEEeccccccCCcCcccCcccceEEEEcCCHHHHHHHHHHHHhccEEeCCCCC
Confidence            9999999999999999999999999999865554444469999999999999999999999999999999999999 899


Q ss_pred             CHHHHHHhcCCccccCCccccccccccchhccC
Q 013241          397 TIEYHKLILDVEDFKNGKVDTAFIPKHEQELQA  429 (447)
Q Consensus       397 n~~~~~~~l~~~~f~~g~~~t~~~~~~~~~~~~  429 (447)
                      |++||++||.+|+|++|+++|+||+++++++..
T Consensus       529 n~~~~~~~~~~~~f~~g~~~t~~~~~~~~~~~~  561 (587)
T 3jrx_A          529 TVEYLINLLETESFQNNDIDTGWLDYLIAEKVQ  561 (587)
T ss_dssp             TTHHHHHHHTSHHHHTTCSCCGGGGC-------
T ss_pred             cHHHHHHHhCChhhccCCcchhHHhHhhhhhcc
Confidence            999999999999999999999999999988753
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A Back     alignment and structure
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Back     alignment and structure
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A* Back     alignment and structure
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* Back     alignment and structure
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Back     alignment and structure
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* Back     alignment and structure
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} Back     alignment and structure
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Back     alignment and structure
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans} Back     alignment and structure
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ... Back     alignment and structure
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A Back     alignment and structure
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii} Back     alignment and structure
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis} Back     alignment and structure
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Back     alignment and structure
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* Back     alignment and structure
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A Back     alignment and structure
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* Back     alignment and structure
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* Back     alignment and structure
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A* Back     alignment and structure
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus} Back     alignment and structure
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A* Back     alignment and structure
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* Back     alignment and structure
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} Back     alignment and structure
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis} Back     alignment and structure
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Back     alignment and structure
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A Back     alignment and structure
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A Back     alignment and structure
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus} Back     alignment and structure
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A Back     alignment and structure
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens} Back     alignment and structure
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis} Back     alignment and structure
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A Back     alignment and structure
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A* Back     alignment and structure
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Back     alignment and structure
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis} Back     alignment and structure
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A* Back     alignment and structure
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A* Back     alignment and structure
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii} Back     alignment and structure
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans} Back     alignment and structure
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1 Back     alignment and structure
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis} Back     alignment and structure
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A* Back     alignment and structure
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A Back     alignment and structure
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum} Back     alignment and structure
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A* Back     alignment and structure
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A* Back     alignment and structure
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B* Back     alignment and structure
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {} Back     alignment and structure
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A* Back     alignment and structure
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori} Back     alignment and structure
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A* Back     alignment and structure
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus} Back     alignment and structure
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A* Back     alignment and structure
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A* Back     alignment and structure
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii} Back     alignment and structure
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9 Back     alignment and structure
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida} Back     alignment and structure
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V} Back     alignment and structure
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A* Back     alignment and structure
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens} Back     alignment and structure
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Back     alignment and structure
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A Back     alignment and structure
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X* Back     alignment and structure
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X Back     alignment and structure
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B* Back     alignment and structure
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B* Back     alignment and structure
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A* Back     alignment and structure
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus} Back     alignment and structure
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A* Back     alignment and structure
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A* Back     alignment and structure
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} Back     alignment and structure
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 447
d1a9xa5275 d.142.1.2 (A:128-402) Carbamoyl phosphate syntheta 5e-73
d1ulza3214 d.142.1.2 (A:115-328) Biotin carboxylase (BC), dom 2e-56
d2j9ga3216 d.142.1.2 (A:115-330) Biotin carboxylase (BC), dom 1e-51
d2r7ka2238 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carbo 4e-43
d1a9xa6259 d.142.1.2 (A:677-935) Carbamoyl phosphate syntheta 5e-39
d2j9ga1116 b.84.2.1 (A:331-446) Biotin carboxylase (BC), C-do 2e-37
d1w96a3267 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M 1e-36
d1ulza1123 b.84.2.1 (A:329-451) Biotin carboxylase (BC), C-do 1e-34
d1w96a1116 b.84.2.1 (A:451-566) Acetyl-CoA carboxylase, BC-C 3e-33
d2r85a2235 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carbo 1e-32
d1i7na2206 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus nor 2e-24
d1uc8a2192 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme Ly 1e-22
d1kjqa3206 d.142.1.2 (A:113-318) Glycinamide ribonucleotide t 9e-20
d1ulza2114 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-term 2e-18
d2j9ga2114 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-term 3e-17
d1w96a2170 c.30.1.1 (A:14-183) Acetyl-CoA carboxylase, BC-N s 5e-16
d3etja3198 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribo 1e-15
d1iowa2210 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain 2e-15
d1gsoa3224 d.142.1.2 (A:104-327) Glycinamide ribonucleotide s 1e-14
d1ehia2228 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase V 6e-14
d1vkza3220 d.142.1.2 (A:94-313) Glycinamide ribonucleotide sy 3e-10
d1e4ea2211 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase V 9e-08
>d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Length = 275 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains
species: Escherichia coli [TaxId: 562]

 Score =  228 bits (583), Expect = 5e-73
 Identities = 50/271 (18%), Positives = 109/271 (40%), Gaps = 24/271 (8%)

Query: 120 IEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLE 179
           +EEA+ +A ++GFP +I+ +   GG G  +A   +E     ++  +          + ++
Sbjct: 25  MEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREE----FEEICARGLDLSPTKELLID 80

Query: 180 KYVQNPRHIEFQVLADKYGN--VVHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDA 237
           + +   +  E +V+ DK  N  +V   E   ++       +  AP+  LT +  + M +A
Sbjct: 81  ESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNA 140

Query: 238 AVAAAASIGY-IGVGTVEFLLDERGS-FYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVA 295
           ++A    IG   G   V+F ++ +      +EMN R+     +    +   + +    +A
Sbjct: 141 SMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLA 200

Query: 296 MGGKLRYKQEDIVLQGHSIECRINAEDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDY 355
           +G  L     D           I       +F P       Y+    P    +     + 
Sbjct: 201 VGYTLDELMND-----------ITGGRTPASFEPSID----YVVTKIPRFNFEKFAGAND 245

Query: 356 VVPPSYDSLLGKLIVWAPTREKAIERMKRAL 386
            +     S +G+++    T+++++++  R L
Sbjct: 246 RLTTQMKS-VGEVMAIGRTQQESLQKALRGL 275
>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]} Length = 214 Back     information, alignment and structure
>d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2 {Escherichia coli [TaxId: 562]} Length = 216 Back     information, alignment and structure
>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]} Length = 238 Back     information, alignment and structure
>d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Length = 259 Back     information, alignment and structure
>d2j9ga1 b.84.2.1 (A:331-446) Biotin carboxylase (BC), C-domain {Escherichia coli [TaxId: 562]} Length = 116 Back     information, alignment and structure
>d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 267 Back     information, alignment and structure
>d1ulza1 b.84.2.1 (A:329-451) Biotin carboxylase (BC), C-domain {Aquifex aeolicus [TaxId: 63363]} Length = 123 Back     information, alignment and structure
>d1w96a1 b.84.2.1 (A:451-566) Acetyl-CoA carboxylase, BC-C subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 116 Back     information, alignment and structure
>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]} Length = 235 Back     information, alignment and structure
>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 206 Back     information, alignment and structure
>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX ATP-binding domain {Thermus thermophilus [TaxId: 274]} Length = 192 Back     information, alignment and structure
>d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]} Length = 206 Back     information, alignment and structure
>d1ulza2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 114 Back     information, alignment and structure
>d2j9ga2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Escherichia coli [TaxId: 562]} Length = 114 Back     information, alignment and structure
>d1w96a2 c.30.1.1 (A:14-183) Acetyl-CoA carboxylase, BC-N subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170 Back     information, alignment and structure
>d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 {Escherichia coli [TaxId: 562]} Length = 198 Back     information, alignment and structure
>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain {Escherichia coli, gene ddlB [TaxId: 562]} Length = 210 Back     information, alignment and structure
>d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]} Length = 224 Back     information, alignment and structure
>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]} Length = 228 Back     information, alignment and structure
>d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]} Length = 220 Back     information, alignment and structure
>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA, C-domain {Enterococcus faecium [TaxId: 1352]} Length = 211 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query447
d1a9xa5275 Carbamoyl phosphate synthetase (CPS), large subuni 100.0
d1a9xa6259 Carbamoyl phosphate synthetase (CPS), large subuni 100.0
d2j9ga3216 Biotin carboxylase (BC), domain 2 {Escherichia col 100.0
d1ulza3214 Biotin carboxylase (BC), domain 2 {Aquifex aeolicu 100.0
d1w96a3267 Acetyl-CoA carboxylase, BC-M subdomain {Baker's ye 100.0
d1ulza1123 Biotin carboxylase (BC), C-domain {Aquifex aeolicu 100.0
d2j9ga1116 Biotin carboxylase (BC), C-domain {Escherichia col 100.0
d1w96a1116 Acetyl-CoA carboxylase, BC-C subdomain {Baker's ye 100.0
d1kjqa3206 Glycinamide ribonucleotide transformylase PurT, do 99.95
d3etja3198 N5-carboxyaminoimidazole ribonucleotide synthetase 99.93
d1vkza3220 Glycinamide ribonucleotide synthetase (GAR-syn), d 99.93
d1gsoa3224 Glycinamide ribonucleotide synthetase (GAR-syn), d 99.93
d1iowa2210 D-ala-D-ala ligase, C-domain {Escherichia coli, ge 99.92
d2r7ka2238 5-formaminoimidazole-4-carboxamide ribonucleotide 99.92
d1ehia2228 D-alanine:D-lactate ligase VanA, C-domain {Leucono 99.91
d1e4ea2211 D-alanine:D-lactate ligase VanA, C-domain {Enteroc 99.9
d1uc8a2192 Lysine biosynthesis enzyme LysX ATP-binding domain 99.88
d2r85a2235 5-formaminoimidazole-4-carboxamide ribonucleotide 99.87
d1i7na2206 Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116 99.76
d1ulza2114 Biotin carboxylase (BC), N-terminal domain {Aquife 99.27
d2j9ga2114 Biotin carboxylase (BC), N-terminal domain {Escher 99.26
d1gsaa2192 Prokaryotic glutathione synthetase, C-domain {Esch 99.05
d1w96a2170 Acetyl-CoA carboxylase, BC-N subdomain {Baker's ye 98.91
d2pbza2213 5-formaminoimidazole-4-carboxamide ribonucleotide 98.47
d2nu7b2238 Succinyl-CoA synthetase, beta-chain, N-terminal do 97.75
d1eucb2246 Succinyl-CoA synthetase, beta-chain, N-terminal do 97.23
d1kjqa174 Glycinamide ribonucleotide transformylase PurT, C- 95.26
d1kjqa2111 Glycinamide ribonucleotide transformylase PurT, N- 93.62
d3etja278 N5-carboxyaminoimidazole ribonucleotide synthetase 83.78
d1pjqa1113 Siroheme synthase CysG, domain 1 {Salmonella typhi 83.65
d1gsoa199 Glycinamide ribonucleotide synthetase (GAR-syn), C 80.86
d1vkza186 Glycinamide ribonucleotide synthetase (GAR-syn), C 80.4
>d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.7e-43  Score=338.00  Aligned_cols=268  Identities=19%  Similarity=0.286  Sum_probs=229.0

Q ss_pred             HHHHHHHHcCCCeeEEEeccChhhHHHHHhccccCHHHHHHHhhhhCCcEEEEeCCCCCCcCeEEECCHHHHHHHHHHHH
Q 013241           85 RVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAK  164 (447)
Q Consensus        85 ri~r~~~~lGi~~vav~~~~dk~~~~~~lad~~v~i~e~~~~~~~ig~PvVvKP~~g~Gg~Gv~~v~~~~el~~~~~~~~  164 (447)
                      +..+.++++|+|++......+.              +|+.++++++|||+||||.+|+||+|+++|++++|+.++++++.
T Consensus         4 ~~r~~~~~~gip~~~~~~~~~~--------------~ea~~~~~~ig~PvviKp~~~~gg~G~~~v~~~~el~~~~~~a~   69 (275)
T d1a9xa5           4 RFDVAMKKIGLETARSGIAHTM--------------EEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGL   69 (275)
T ss_dssp             HHHHHHHHTTCCCCSEEEESSH--------------HHHHHHHHHHCSSEEEEETTCCTTTTCEEESSHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCceEeCCH--------------HHHHHHHHHcCCCEEEEECCCCCCCceEEeeCHHHHHHHHHHHH
Confidence            4567889999999998888888              99999999999999999999999999999999999999887765


Q ss_pred             HHHHHhcCCCcEEEeeccCCCceEEEEEEEeCCCcEE--EEeeeeeccccccceeeEecCCCCCCHHHHHHHHHHHHHHH
Q 013241          165 SEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVV--HFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAA  242 (447)
Q Consensus       165 ~~~~~~~~~~~~lvEefI~G~~ei~v~vl~d~~g~vv--~l~~r~~s~~~~~~k~~~~~P~~~l~~~~~~~l~~~a~~i~  242 (447)
                      ..    +++..++||||++|++|+++++++|++|+.+  +..+++|+.++++++.++.+|++.++++.++++.+.+.+++
T Consensus        70 ~~----~~~~~v~iEe~l~g~~e~~v~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~aP~~~L~~~~~~~i~~~a~~i~  145 (275)
T d1a9xa5          70 DL----SPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVL  145 (275)
T ss_dssp             HH----CTTSCEEEEECCTTSEEEEEEEEECTTCCEEEEEEEEESSCTTSCGGGSCEEESCCSCCHHHHHHHHHHHHHHH
T ss_pred             hh----CCCCcEEEeeecCCchhheeeeEEecCCCEEEEEeeccccccCcccCceeEEcCCCcCCHHHHHHHHHHHHHHH
Confidence            43    5778999999999988999999999988854  56789999999999999999999999999999999999999


Q ss_pred             HHcCCc-cEeEEEEEEe-cCCCEEEEEEeccCCCccchhhhhcCCCHHHHHHHHHcCCCCCCCccccccceeEEEEEEee
Q 013241          243 ASIGYI-GVGTVEFLLD-ERGSFYFMEMNTRIQVEHPVTEMISSVDLIEEQIHVAMGGKLRYKQEDIVLQGHSIECRINA  320 (447)
Q Consensus       243 ~alg~~-G~~~vEf~~d-~~G~~~~iEiNpR~~g~~~v~e~~~GiDl~~~~i~~a~G~~l~~~~~~~~~~g~ai~~ri~a  320 (447)
                      +++||. |.+++||+++ ++|++||+|+|||+|.+|++++.+||+|++++++++++|.+++..+.+...           
T Consensus       146 ~~lg~~~G~~~~ef~~~~~~~~~~~iE~npR~~~~~~~~~~~tgidlv~~~~~~a~G~~l~~~~~~~~~-----------  214 (275)
T d1a9xa5         146 REIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITG-----------  214 (275)
T ss_dssp             HHHTCCSEEEEEEEEECTTTCCEEEEEEESSCCHHHHHHHHHHSCCHHHHHHHHHTTCCGGGSBCTTTT-----------
T ss_pred             HHcCceECceEEEEEEeCCCCEEEEEEecCCCCceehhhhHhhCCCHHHHHHHHHcCCCCccccccccc-----------
Confidence            999996 9999999998 678999999999999999999999999999999999999998755543321           


Q ss_pred             CCCCccccCCCCceeEEecCCCCcEEEeeeecCCcccCCCCCccceEEEEEcCCHHHHHHHHHHhh
Q 013241          321 EDPFKNFRPGPGRITAYLPAGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRAL  386 (447)
Q Consensus       321 e~p~~~f~p~~g~i~~~~~~~~~~vr~d~~~~~G~~v~~~~ds~lg~vi~~g~~~~eA~~~~~~al  386 (447)
                      ......+.|..+.+...    .|.++++.....|..+.+.||| +|+||++|+|++||+.|+.+||
T Consensus       215 ~~~~~~~~~~~~~~~~k----~~~~~~~~~~~~~~~l~~~~~s-~g~vi~~G~t~~eA~~ka~raL  275 (275)
T d1a9xa5         215 GRTPASFEPSIDYVVTK----IPRFNFEKFAGANDRLTTQMKS-VGEVMAIGRTQQESLQKALRGL  275 (275)
T ss_dssp             TCSBSCSCCBCSSEEEE----EEECCGGGCTTSCCBCCSSCCC-CEEEEEEESSHHHHHHHHHHHS
T ss_pred             ccCccccCCCCCcEecC----ccceecCCCCCCCCEeCCCccc-CEEEEEEECCHHHHHHHHHHhC
Confidence            11122344555544321    1222333444567788899999 9999999999999999999986
>d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ulza1 b.84.2.1 (A:329-451) Biotin carboxylase (BC), C-domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2j9ga1 b.84.2.1 (A:331-446) Biotin carboxylase (BC), C-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w96a1 b.84.2.1 (A:451-566) Acetyl-CoA carboxylase, BC-C subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain {Escherichia coli, gene ddlB [TaxId: 562]} Back     information, alignment and structure
>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]} Back     information, alignment and structure
>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA, C-domain {Enterococcus faecium [TaxId: 1352]} Back     information, alignment and structure
>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX ATP-binding domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ulza2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2j9ga2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gsaa2 d.142.1.1 (A:123-314) Prokaryotic glutathione synthetase, C-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w96a2 c.30.1.1 (A:14-183) Acetyl-CoA carboxylase, BC-N subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2pbza2 d.142.1.9 (A:100-312) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Thermococcus kodakaraensis [TaxId: 311400]} Back     information, alignment and structure
>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1kjqa1 b.84.2.1 (A:319-392) Glycinamide ribonucleotide transformylase PurT, C-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1gsoa1 b.84.2.1 (A:328-426) Glycinamide ribonucleotide synthetase (GAR-syn), C-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vkza1 b.84.2.1 (A:314-399) Glycinamide ribonucleotide synthetase (GAR-syn), C-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure