Citrus Sinensis ID: 013250

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------
Protein Sequence
MDNSSGLGGRFLSGQNVGLLDLESSIPRNQQNQLGHPSFSRPHQMNMMHGLENDHHHIGLLEVKGSSRKGLPMNFGRGKMVSPINASNNGNTSEEDEPSYTDEGNGENSNGGRDKKGSMWHRMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRYKKLNDILGKGLTCQVVENPALIDTMSCSHLSAKAKDDVRKILGSKHLFYKEMFAYHNGKKIPNCHDIDLQGNDESEEEEADRNNDTDDDESDNEDDRNDDEDEGRMAEIGERGKGNEEDGHSWPQSAGRSVFEMEMARIFQDPSKSMWERREWIKKQKLALQNQRVSIQAQAFELEKQHLKWLRYCSKKDRELERSRLENERIRLDNEQMILHLKQKQFELDLRKTEVSLEPTSLGNRDRDRDQIDDLGRHQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccccEEEcccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccHHHHHHHHHHHHHccccccccccccccccEEEEEccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccccEEEccHHHHHHcccccccHHHHHHHHHHHHccHHHHHHHHHHcccccccccccHHHccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEcccccccccccccccccccccHHHHHHHcccc
Coil and Loop (DISEMBL)
mdnssglggrflsgqnvglldlessiprnqqnqlghpsfsrphqmnmmhglendhhhigllevkgssrkglpmnfgrgkmvspinasnngntseedepsytdegngensnggrdkkgsmwhRMKWTDNVVRLLIAAVACvgddgtidgveglkrksgilqkkgkwKTVSKIMISrgcqvspqqcEDKFNDLNKRYKKLNDILgkgltcqvvenpalidtmscshlsaKAKDDVRKILGSKHLFYKEMFAYhngkkipnchdidlqgndeseeeeadrnndtdddesdneddrnddedegrmaeigergkgneedghswpqsagrSVFEMEMARIFQDPSKSMWERREWIKKQKLALQNQRVSIQAQAFELEKQHLKWLRYCSKKDRELERSRLENERIRLDNEQMILHLKQKQFELDLRktevsleptslgnrdrdrdqiddlgrhq
Flexible Loop (DISEMBL)
mdnssglggrflsgqNVGLLDLESSIPRNQQNQLGHPSFSRPHQMNMMHGLENDHHHIGLLEVKGSSRKGLPMnfgrgkmvspinasnngntseedepsytdegngensnggrdkkgsMWHRMKWTDNVVRLLIAAVACVgddgtidgveglkrksgilqkkgkwktVSKIMIsrgcqvspqqCEDKFNDLNKRYKKLNDILGKGLTCQVVENPALIDTMSCSHLSAKAKDDVRKILGSKHLFYKEMFAYHNGKKIPNCHDIDLQGNDEseeeeadrnndtdddesdneddrnddedegrMAEIgergkgneedghswPQSAGRSVFEMEMARIFQDPSKSMWERREWIKKQKLALQNQRVSIQAQAFELEKQHLKWLrycskkdrelersrlenerirldneqMILHLKQKqfeldlrktevsleptslgnrdrdrdqiddlgrhq
Low Complexity Region (SEG)
MDNSSGLGGRFLSGQNVGLLDLESSIPRNQQNQLGHPSFSRPHQMNMMHGLENDHHHIGLLEVKGSSRKGLPMNFGRGKMVSPINASNNGNTSEEDEPSYTDEGNGENSNGGRDKKGSMWHRMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRYKKLNDILGKGLTCQVVENPALIDTMSCSHLSAKAKDDVRKILGSKHLFYKEMFAYHNGKKIPNCHDIDLQGNDESeeeeadrnndtdddesdneddrnddedeGRMAEIGERGKGNEEDGHSWPQSAGRSVFEMEMARIFQDPSKSMWERREWIKKQKLALQNQRVSIQAQAFELEKQHLKWLRYCSKKDrelersrlenerirlDNEQMILHLKQKQFELDLRKTEVSLEPTSLGNRDRDRDQIDDLGRHQ
Disordered region (IsUnstruct)
**********************************************************************************************************************MWHRMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRYKKLNDILGKGLTCQVVENPALIDTMSCSHLSAKAKDDVRKILGSKHLFYKEMFAYHNGKKIPNCHDI*******************************************************************************MWERREWIKKQKLALQNQRVSIQAQAFELEKQHLKWLRYCS**********************MILHL**************************************
Disordered Region (DISOPRED)
**************************************************************************************************************************MKWTDNVVRLLIAAVACVGD**********************WKTVSKIMISRGCQVSPQQCEDKFNDLNKRYKKLNDILGKGLTCQVVENPALIDT******************GSKHLFYKEMFAYHNGKKI*********************************************************************************************************SIQAQAFELEK***************************************************************************
Disordered Region (DISEMBL)
MDNSSGLGGRFLSGQNVGLLDLESSIPRNQQNQLGHPSFSRPHQMNMMHGLENDHHHIGLLEVKGSSRKGLPMNFGRGKMVSPINAS******************************SMWHRMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRYKKLNDILGKGLTCQVVENPALIDTMSCSHLSAKAKDDVRKILGSKHLFYKEMFAYHNGKKIPNCHDIDLQG*******************************EGRMAEIGE**************SAGRSVFEMEMARIFQDPSKSMWERREWIKKQKLALQNQRVSIQAQAFELEKQHLKWLRYCSKKDRELERSRLENERIRLDNEQMILHLKQKQFELDLRKTEVSLEPTSLGNRDRDRDQ********
Disordered Region (DISPRO)
****************VGLLDLESSIPRNQQNQLGHPSFSRPHQMNMMHGLENDHHHIGLLEVKGSSRKGLPMNFGRG***************************************SMWHRMKWTDNVVRLLIAAVACVGDDG*******LKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRYKKLNDILGKGLTCQVVENPALIDTMSCSHLSAKAKDDVRKILGSKHLFYKEMFAYHNGKKIPNCHDIDLQ***********************************************************SVFEMEMARIFQDPSKSMWERREWIKKQKLALQNQRVSIQAQAFELEKQHLKWLRYCSKKDRELERSRLENERIRLDNEQMILHLKQKQFELDL*****************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDNSSGLGGRFLSGQNVGLLDLESSIPRNQQNQLGHPSFSRPHQMNMMHGLENDHHHIGLLEVKGSSRKGLPMNFGRGKMVSPINASNNGNTSEEDEPSYTDEGNGENSNGGRDKKGSMWHRMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRYKKLNDILGKGLTCQVVENPALIDTMSCSHLSAKAKDDVRKILGSKHLFYKEMFAYHNGKKIPNCHDIDLQGNDESEEEEADRNNDTDDDESDNEDDRNDDEDEGRMAEIGERGKGNEEDGHSWPQSAGRSVFEMEMARIFQDPSKSMWERREWIKKQKLALQNQRVSIQAQAFELEKQHLKWLRYCSxxxxxxxxxxxxxxxxxxxxxQMILHLKQKQFELDLRKTEVSLEPTSLGNRDRDRDQIDDLGRHQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	447
255544826	454	transcription factor, putative [Ricinus	0.986	0.971	0.669	1e-161
225438331	451	PREDICTED: uncharacterized protein LOC10	0.968	0.960	0.640	1e-149
356557644	447	PREDICTED: uncharacterized protein LOC10	0.937	0.937	0.613	1e-140
356547289	439	PREDICTED: uncharacterized protein LOC10	0.955	0.972	0.585	1e-135
357454317	445	hypothetical protein MTR_2g098080 [Medic	0.928	0.932	0.586	1e-131
449448732	443	PREDICTED: uncharacterized protein LOC10	0.935	0.943	0.575	1e-123
449502614	443	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.935	0.943	0.568	1e-121
224057457	337	predicted protein [Populus trichocarpa]	0.718	0.952	0.647	1e-119
224072809	349	predicted protein [Populus trichocarpa]	0.756	0.968	0.602	1e-113
255583354	441	transcription factor, putative [Ricinus	0.789	0.800	0.438	2e-79

>gi|255544826|ref|XP_002513474.1| transcription factor, putative [Ricinus communis] gi|223547382|gb|EEF48877.1| transcription factor, putative [Ricinus communis]

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 306/457 (66%), Positives = 359/457 (78%), Gaps = 16/457 (3%)

Query: 3   NSSGLGGRFLSGQNVGLLDLESSIPRNQQNQLGHPSFSRPHQMNMMHGLENDHHHIGLLE 62
           ++SGLGG+FLS    GLLDLES I R QQ Q GH S +    MN++ GL NDH  IGL+E
Sbjct: 2   DASGLGGQFLSSPVGGLLDLESPIHRQQQAQSGHSSLAHQRHMNLISGLGNDHQPIGLME 61

Query: 63  VKGSSRKGLPMNFGRGKMVSPINASNNGNTSEEDEPSYTDEGNGENSNGGRDKKGSMWHR 122
           VKGSS +    N  +GK VS  + +N+GN SE+DEPS+T++GNG+NS+G + KKGS W R
Sbjct: 62  VKGSSPRNYSTNLSKGKGVSHFSPTNDGNVSEDDEPSFTEDGNGDNSSGAKSKKGSPWQR 121

Query: 123 MKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQ 182
           MKWTDNVVRLLIA VACVGDDG  DGVEGLKRKSGILQKKGKWKTVSKI+IS+GC VSPQ
Sbjct: 122 MKWTDNVVRLLIAVVACVGDDGAFDGVEGLKRKSGILQKKGKWKTVSKILISKGCHVSPQ 181

Query: 183 QCEDKFNDLNKRYKKLNDILGKGLTCQVVENPALIDTMSCSHLSAKAKDDVRKILGSKHL 242
           Q EDKFNDLNKRYK+LNDILG+G +C+VVENPAL+D+M    LSAKAK+DVRKIL SKHL
Sbjct: 182 QSEDKFNDLNKRYKRLNDILGRGTSCRVVENPALMDSMP---LSAKAKEDVRKILSSKHL 238

Query: 243 FYKEMFAYHNGKKIPNCHDIDLQG-----------NDESEEEEADRNNDTDDDESDNEDD 291
           FYKEM AYHNG+ IPNC D+DLQG           N+ SEEEEA+ ++D+D+DESDNEDD
Sbjct: 239 FYKEMCAYHNGQMIPNCQDLDLQGFSLPLERCSRDNNGSEEEEAEGHDDSDEDESDNEDD 298

Query: 292 RNDDEDEGRMAEIGERGKGNEEDGHSWPQSAGRSVFEMEMARIFQDPSKSMWERREWIKK 351
            N  E+  RM    ER K NEED H WPQS G + FE+EMA IFQDPS S+WE++EWI K
Sbjct: 299 NNAIEEGERMGMYAERNKVNEEDAHLWPQSGGCNSFEVEMAGIFQDPSVSLWEKKEWINK 358

Query: 352 QKLALQNQRVSIQAQAFELEKQHLKWLRYCSKKDRELERSRLENERIRLDNEQMILHLKQ 411
           QKL L  QRVSIQAQAFELEKQ  KWLRYCSKKD+E E+ RLENER+RL+NEQ +L L+Q
Sbjct: 359 QKLQLLEQRVSIQAQAFELEKQRFKWLRYCSKKDKEFEKLRLENERMRLENEQSVLQLRQ 418

Query: 412 KQFELDLRKTEVSLEPTSLG-NRDRDRDQIDDLGRHQ 447
           KQ E+DLR +E S +PTSLG +R + RDQI DLGRHQ
Sbjct: 419 KQLEMDLRSSESSRDPTSLGIDRLQGRDQI-DLGRHQ 454

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438331|ref|XP_002273284.1| PREDICTED: uncharacterized protein LOC100250855 [Vitis vinifera]

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 290/453 (64%), Positives = 352/453 (77%), Gaps = 20/453 (4%)

Query: 9   GRFLSGQNVGLLDLESSIPRNQQNQLGHPSFSRPHQMNMMHGLENDHHHIGLLEVKGSSR 68
           G FLSG + G+L+LE+SI R+QQ Q+  P  +  H MN+M G ENDH  IG LE KGS+ 
Sbjct: 5   GGFLSGTSAGILELETSIQRHQQAQMSIPPHTHHHHMNVMTGFENDHCSIGTLETKGSTP 64

Query: 69  KGLPMNFGRGKMVSPINASNN--GNTSEEDEPSYTDEGNGENSNGGRDKKGSMWHRMKWT 126
           KG+P+N+G+GK ++P++ +NN   NTS+EDEPSYT++   EN +G + KKGS W RMKWT
Sbjct: 65  KGIPINYGKGKGIAPVSVANNDNNNTSDEDEPSYTED---ENFSGAKGKKGSPWQRMKWT 121

Query: 127 DNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCED 186
           DNVVRLLIA VACVGDDGT++GVEGLKRKSGILQKKGKWKTVSKIMIS+GC VSPQQCED
Sbjct: 122 DNVVRLLIAVVACVGDDGTLEGVEGLKRKSGILQKKGKWKTVSKIMISKGCFVSPQQCED 181

Query: 187 KFNDLNKRYKKLNDILGKGLTCQVVENPALIDTMSCSHLSAKAKDDVRKILGSKHLFYKE 246
           KFNDLNKRYK+LN+ILG+G TC+VVENPAL+D+M    LSAK KDDV+KIL SKHLFY+E
Sbjct: 182 KFNDLNKRYKRLNEILGRGTTCRVVENPALMDSM--PQLSAKMKDDVKKILSSKHLFYQE 239

Query: 247 MFAYHNGKKIPNCHDIDLQG-----------NDESEEEEADRNNDTDDDESDNEDDRNDD 295
           M AYHNGK IPNCHDIDLQG           N+ SEEEEA+ N D DDDE DNE+  N D
Sbjct: 240 MCAYHNGKSIPNCHDIDLQGYFSPLARSSKDNNGSEEEEAEENEDFDDDELDNEEYDNVD 299

Query: 296 EDEGRMAEIGERGKGNEEDGHSWPQSAGRSVFEMEMARIFQDPSKSMWERREWIKKQKLA 355
               RM +  +R K N+ED   WPQ A +  FE+EMA IF+DP+KS+WE++EWIK + L 
Sbjct: 300 VHAQRMGQFHQRRKVNQEDCSFWPQDACQDSFEVEMAGIFEDPTKSLWEQKEWIKNRMLQ 359

Query: 356 LQNQRVSIQAQAFELEKQHLKWLRYCSKKDRELERSRLENERIRLDNEQMILHLKQKQFE 415
           LQ QRV+I AQ FELEKQ  KWLRY SKK R+LE SRLENER+ L+NE+M+L LKQK+ E
Sbjct: 360 LQEQRVTIMAQGFELEKQRFKWLRYSSKKGRDLENSRLENERLGLENERMVLELKQKELE 419

Query: 416 LDLRKTEVSLEPTSLG-NRDRDRDQIDDLGRHQ 447
           LD ++ E SL+P SLG +R + RDQI +LGR+Q
Sbjct: 420 LDSKRPEASLDPASLGIDRLQGRDQI-ELGRNQ 451

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557644|ref|XP_003547125.1| PREDICTED: uncharacterized protein LOC100798932 [Glycine max]

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 270/440 (61%), Positives = 328/440 (74%), Gaps = 21/440 (4%)

Query: 19  LLDLESSIPRNQQNQLGHPSFSRPHQMNMMHGLENDHHHIGLLEVKGSSRKGLPMNFGRG 78
           +LDLES   R+Q  QLGHPS +    MNMM GLE+DH  IGL+EVK  +     +NFG+G
Sbjct: 18  ILDLESPFHRHQHTQLGHPSITGQQHMNMMSGLESDHP-IGLIEVKSLN---AALNFGKG 73

Query: 79  KMVSPINASNNGNTSEEDEPSYTDEGNGENSNGGRDKKGSMWHRMKWTDNVVRLLIAAVA 138
           K V+P   SN+   SEEDEPSY +EGN EN +GG+ KKGS W RMKWTDNVVRLLI  V+
Sbjct: 74  KAVAP---SNSNELSEEDEPSYAEEGNCENLDGGKSKKGSPWQRMKWTDNVVRLLITVVS 130

Query: 139 CVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRYKKL 198
           CVGDDGTI G++  KRKSG+LQKKGKWKTVSKIMI +GC VSPQQCEDKFNDLNKRYK+L
Sbjct: 131 CVGDDGTIGGMDCHKRKSGVLQKKGKWKTVSKIMIGKGCHVSPQQCEDKFNDLNKRYKRL 190

Query: 199 NDILGKGLTCQVVENPALIDTMSCSHLSAKAKDDVRKILGSKHLFYKEMFAYHNGKKIPN 258
           NDILG+G  CQVVENP L+D+M   +LSAK KDDVRKIL SKHLFYKEM AYHNG++IPN
Sbjct: 191 NDILGRGTCCQVVENPVLMDSM--PNLSAKMKDDVRKILSSKHLFYKEMCAYHNGQRIPN 248

Query: 259 CHDIDLQGNDESEEEEADRNNDTDDDESDNED----------DRNDDEDEGRMAEIGERG 308
            H++DLQG       ++  NN ++D++ DN D          + N  ED GRM ++ +R 
Sbjct: 249 SHELDLQGYSLEHGRDSRDNNGSEDEDEDNNDSEDDESDDEININAHEDGGRMQQLCDRN 308

Query: 309 KGNEEDGHSWPQSAGRSVFEMEMARIFQDPSKSMWERREWIKKQKLALQNQRVSIQAQAF 368
           K +EED H  PQ++    FE+EMAR+FQDP+KS+ E+REWIK Q L LQ Q +S QAQA 
Sbjct: 309 KLSEEDVHFGPQTSRMDKFEVEMARVFQDPTKSLHEQREWIKIQMLQLQEQNISYQAQAL 368

Query: 369 ELEKQHLKWLRYCSKKDRELERSRLENERIRLDNEQMILHLKQKQFELDLRKTEVSLEPT 428
           ELEKQ LKWLRYCSKKDRELE+ RLEN+R++L+NE+ IL LKQK+ E D   +E+SL+P 
Sbjct: 369 ELEKQRLKWLRYCSKKDRELEKLRLENKRMKLENERRILKLKQKELEADFSTSEMSLDPA 428

Query: 429 SLG-NRDRDRDQIDDLGRHQ 447
           SLG NR + R+ I  LGR Q
Sbjct: 429 SLGINRPQGREHI-SLGRQQ 447

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547289|ref|XP_003542048.1| PREDICTED: uncharacterized protein LOC100801014 [Glycine max]

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 267/456 (58%), Positives = 328/456 (71%), Gaps = 29/456 (6%)

Query: 3   NSSGLGGRFLSGQNVGLLDLESSIPRNQQNQLGHPSFSRPHQMNMMHGLENDHHHIGLLE 62
           +SSGLGG        G+LDLES   R+Q  QLG  S +    +N+M GLE+DH  IGL+E
Sbjct: 2   SSSGLGG--------GILDLESPFHRHQHTQLGQQSITGQQHINIMSGLESDHP-IGLIE 52

Query: 63  VKGSSRKGLPMNFGRGKMVSPINASNNGNTSEEDEPSYTDEGNGENSNGGRDKKGSMWHR 122
           VK  +   + +NFG+ K ++P   SN+   SEEDEPSY +EGN EN +GG  KKGS W R
Sbjct: 53  VKSLN---VALNFGKAKALAP---SNSNELSEEDEPSYAEEGNCENLDGGNSKKGSPWQR 106

Query: 123 MKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQ 182
           MKW DNVVRLLI  V+CVGDDGTI G++G KRKSG+LQKKGKWK VSKIMI +GC VSPQ
Sbjct: 107 MKWADNVVRLLITVVSCVGDDGTIGGMDGHKRKSGVLQKKGKWKMVSKIMIGKGCHVSPQ 166

Query: 183 QCEDKFNDLNKRYKKLNDILGKGLTCQVVENPALIDTMSCSHLSAKAKDDVRKILGSKHL 242
           QCEDKFNDLNKRYK+LNDILG+G  CQVVENP L+D+M   +LSAK KDDVRKIL SKHL
Sbjct: 167 QCEDKFNDLNKRYKRLNDILGRGTCCQVVENPVLMDSM--PNLSAKMKDDVRKILSSKHL 224

Query: 243 FYKEMFAYHNGKKIPNCHDIDLQGNDESEEEEADRNNDTDDDESDNED----------DR 292
           FYKEM AYHNG++IPN H++DL G       ++  NN ++D++ DN D          + 
Sbjct: 225 FYKEMCAYHNGQRIPNSHELDLPGYSLEHGRDSRDNNGSEDEDEDNNDSEDDESDDEINT 284

Query: 293 NDDEDEGRMAEIGERGKGNEEDGHSWPQSAGRSVFEMEMARIFQDPSKSMWERREWIKKQ 352
           N  ED GRM E+ +R K ++ED H  PQ++    FE+EMAR+FQDP+K + E+REWIK Q
Sbjct: 285 NAHEDGGRMQELCDRNKLSDEDVHFGPQTSRMDKFEVEMARVFQDPTKLLREQREWIKIQ 344

Query: 353 KLALQNQRVSIQAQAFELEKQHLKWLRYCSKKDRELERSRLENERIRLDNEQMILHLKQK 412
            L LQ Q +S QAQA ELEKQ LKWLRYCSKKDREL + RLEN+R++L+NE  IL LKQK
Sbjct: 345 MLQLQEQNISYQAQALELEKQRLKWLRYCSKKDRELGKLRLENKRMKLENEHRILKLKQK 404

Query: 413 QFELDLRKTEVSLEPTSLG-NRDRDRDQIDDLGRHQ 447
           + E D   +E+SL+P SLG NR + R+ I  LGR Q
Sbjct: 405 ELEADFSTSEMSLDPASLGINRTQGREHI-SLGRQQ 439

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454317|ref|XP_003597439.1| hypothetical protein MTR_2g098080 [Medicago truncatula] gi|355486487|gb|AES67690.1| hypothetical protein MTR_2g098080 [Medicago truncatula]

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 260/443 (58%), Positives = 325/443 (73%), Gaps = 28/443 (6%)

Query: 18  GLLDLESSIPRNQQ-NQLGHPSFSRPHQMNMMHGLENDHHHIGLLEVKGSSRKGLPMNFG 76
           G+LDLES   R+QQ  QL H      H MNM+ GLEND + IGL+EVK        +NFG
Sbjct: 17  GILDLESPFNRHQQQTQLAHGQ----HHMNMITGLENDSNQIGLIEVKN-------LNFG 65

Query: 77  RGKMVSPINASNNGNTSEEDEPSYTDEGNGENS-NGGRDKKGSMWHRMKWTDNVVRLLIA 135
           +GK ++  N  N+ + SE+DE  Y ++GN EN  +GG+ KKGS W RMKWTDNVV LLIA
Sbjct: 66  KGKGIASSNHDNSNDMSEDDEHGYGEDGNCENFFDGGKGKKGSPWQRMKWTDNVVGLLIA 125

Query: 136 AVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRY 195
            V+CVG+DGTI GV+G+KRKSG++QKKGKWKTVSKIMIS+GC VSPQQCEDKFNDLNKRY
Sbjct: 126 VVSCVGEDGTISGVDGVKRKSGVVQKKGKWKTVSKIMISKGCHVSPQQCEDKFNDLNKRY 185

Query: 196 KKLNDILGKGLTCQVVENPALIDTMSCSHLSAKAKDDVRKILGSKHLFYKEMFAYHNGKK 255
           K+LN+ILG+G  CQVVENPAL+D+M   +LSAKAKDDVRKIL SKHLFYKEM AYHNG++
Sbjct: 186 KRLNEILGRGTCCQVVENPALMDSM--VNLSAKAKDDVRKILSSKHLFYKEMCAYHNGQR 243

Query: 256 IPNCHDIDLQG-----------NDESEEEEADRNNDTDDDESDNEDDRNDDEDEGRMAEI 304
           IPN HD+DL             +D S++E+ D NN+++DDE DN  + N   D GRM   
Sbjct: 244 IPNSHDLDLHSYSLEHGKDSRDHDGSDDEDED-NNESEDDELDNGININARGDGGRMEGF 302

Query: 305 GERGKGNEEDGHSWPQSAGRSVFEMEMARIFQDPSKSMWERREWIKKQKLALQNQRVSIQ 364
            +R K +EEDGH WPQS G    E EMAR+FQDP KS WE+REWIK+Q L LQ Q V  Q
Sbjct: 303 CDRNKLSEEDGHFWPQSIGMKKLESEMARVFQDPVKSPWEKREWIKQQLLQLQEQNVDFQ 362

Query: 365 AQAFELEKQHLKWLRYCSKKDRELERSRLENERIRLDNEQMILHLKQKQFELDLRKTEVS 424
           A+AFEL+KQ  KWLRY SKKDRELE+  +EN+R++ +NE  IL LKQ++ E +  ++E+S
Sbjct: 363 AKAFELQKQQFKWLRYRSKKDRELEKLAMENKRMKFENEHRILKLKQREQEAEFSRSEMS 422

Query: 425 LEPTSLG-NRDRDRDQIDDLGRH 446
           L+PTS+G  R + R+ I+   +H
Sbjct: 423 LDPTSIGIKRPQGREHINLARQH 445

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448732|ref|XP_004142119.1| PREDICTED: uncharacterized protein LOC101205501 [Cucumis sativus]

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 249/433 (57%), Positives = 311/433 (71%), Gaps = 15/433 (3%)

Query: 21  DLESSIPRNQQNQLGHPSFSRPHQMNMMHGLENDHHHIGLLEVKGSSRKGLPMNFGRGKM 80
           DLES I R Q+ QL +PS ++ HQ+NMM+  E DH  IG+L+ K   +K L M F RGK 
Sbjct: 19  DLESPIRRPQKTQLVNPSLTQRHQLNMMNNFEGDHQSIGILDSKSLGQKDLLMAFNRGKA 78

Query: 81  VSPINASNNGNTSEEDEPSYTDEGNGENSNGGRDKKGSMWHRMKWTDNVVRLLIAAVACV 140
           ++    +NN  TSEEDEPSYT++G  E S   + KKGS W RMKWTD +VRLLIA VACV
Sbjct: 79  IASGCITNN-YTSEEDEPSYTEDG--ECSEFLKGKKGSPWQRMKWTDEIVRLLIAVVACV 135

Query: 141 GDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRYKKLND 200
           GDDG  +   G KRKSGIL KKGKWKTVSKIM S+GC VSPQQCEDKFNDLNKRYK+LND
Sbjct: 136 GDDG--EAGMGSKRKSGILHKKGKWKTVSKIMQSKGCHVSPQQCEDKFNDLNKRYKRLND 193

Query: 201 ILGKGLTCQVVENPALIDTMSCSHLSAKAKDDVRKILGSKHLFYKEMFAYHNGKKIPNCH 260
           ILGKG +C+VVENPAL+D+M   HLS+KAKDDVRKIL SKHLFYKEM AYHNG+ IP C 
Sbjct: 194 ILGKGTSCRVVENPALMDSMP--HLSSKAKDDVRKILSSKHLFYKEMCAYHNGQTIPGCQ 251

Query: 261 DIDLQGN-------DESEEEEADRNNDTDDDESDNEDDRNDDEDEGRMAEIGERGKGNEE 313
           D+D QG         +   E  D ++D+D  ESDNEDD +  E+    +E   R K + +
Sbjct: 252 DVDFQGKILPVANFSKGNNESEDSDSDSDSGESDNEDDHSPVENRLWSSESRGRDKVSAD 311

Query: 314 DGHSWPQSAGRSVFEMEMARIFQDPSKSMWERREWIKKQKLALQNQRVSIQAQAFELEKQ 373
           DG  W  S G++ FE ++     DP+KS WER+ WIKKQ L LQ Q  S QAQ+ ELEKQ
Sbjct: 312 DGPLWSNSVGKNEFEGQIDVFLSDPTKSHWERKVWIKKQMLQLQEQCNSFQAQSVELEKQ 371

Query: 374 HLKWLRYCSKKDRELERSRLENERIRLDNEQMILHLKQKQFELDLRKTEVSLEPTSLGNR 433
             KWLRYCSKK+R+LER+RLENER++LDNEQ +L LK+K+ EL+L+++++++ P    +R
Sbjct: 372 RFKWLRYCSKKNRDLERARLENERMKLDNEQRVLQLKRKEMELELKRSDLAVGPLLAIDR 431

Query: 434 DRDRDQIDDLGRH 446
            + R+Q+ DLG H
Sbjct: 432 IQGREQL-DLGMH 443

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449502614|ref|XP_004161693.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101205501 [Cucumis sativus]

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 246/433 (56%), Positives = 308/433 (71%), Gaps = 15/433 (3%)

Query: 21  DLESSIPRNQQNQLGHPSFSRPHQMNMMHGLENDHHHIGLLEVKGSSRKGLPMNFGRGKM 80
           DLES I R Q+ QL +PS ++ HQ+NMM+  E DH  IG+L+ K   +K L M F RGK 
Sbjct: 19  DLESPIRRPQKTQLVNPSLTQRHQLNMMNNFEGDHQSIGILDSKSLGQKDLLMAFNRGKA 78

Query: 81  VSPINASNNGNTSEEDEPSYTDEGNGENSNGGRDKKGSMWHRMKWTDNVVRLLIAAVACV 140
           ++    +NN  TSEEDEPSYT++G  E S   + KKGS W RMKWTD +VRLLIA VACV
Sbjct: 79  IASGCITNN-YTSEEDEPSYTEDG--ECSEFLKGKKGSPWQRMKWTDEIVRLLIAVVACV 135

Query: 141 GDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRYKKLND 200
           GDDG  +   G KR  G L KKGKWKTVSKIM S+GC VSPQQCEDKFNDLNKRYK+LND
Sbjct: 136 GDDG--EAGMGSKRNLGXLHKKGKWKTVSKIMQSKGCHVSPQQCEDKFNDLNKRYKRLND 193

Query: 201 ILGKGLTCQVVENPALIDTMSCSHLSAKAKDDVRKILGSKHLFYKEMFAYHNGKKIPNCH 260
           ILGKG +C+VVENPAL+D+M   HLS+KAKDDVRKIL SKHLFYKEM AYHNG+ IP C 
Sbjct: 194 ILGKGTSCRVVENPALMDSMP--HLSSKAKDDVRKILSSKHLFYKEMCAYHNGQTIPGCQ 251

Query: 261 DIDLQGN-------DESEEEEADRNNDTDDDESDNEDDRNDDEDEGRMAEIGERGKGNEE 313
           D+D QG         +   E  D ++D+D  ESDNEDD +  E+    +E   R K + +
Sbjct: 252 DVDFQGKILPVANFSKGNNESEDSDSDSDSGESDNEDDHSPVENRLWSSESRGRDKVSAD 311

Query: 314 DGHSWPQSAGRSVFEMEMARIFQDPSKSMWERREWIKKQKLALQNQRVSIQAQAFELEKQ 373
           DG  W  S G++ FE ++     DP+KS WER+ WIKKQ L LQ Q  S QAQ+ ELEKQ
Sbjct: 312 DGPLWSNSVGKNEFEGQIDVFLSDPTKSHWERKVWIKKQMLQLQEQCNSFQAQSVELEKQ 371

Query: 374 HLKWLRYCSKKDRELERSRLENERIRLDNEQMILHLKQKQFELDLRKTEVSLEPTSLGNR 433
             KWLRYCSKK+R+LER+RLENER++LDNEQ +L LK+K+ EL+L+++++++ P    +R
Sbjct: 372 RFKWLRYCSKKNRDLERARLENERMKLDNEQRVLQLKRKEMELELKRSDLAVGPLLAIDR 431

Query: 434 DRDRDQIDDLGRH 446
            + R+Q+ DLG H
Sbjct: 432 IQGREQL-DLGMH 443

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057457|ref|XP_002299233.1| predicted protein [Populus trichocarpa] gi|222846491|gb|EEE84038.1| predicted protein [Populus trichocarpa]

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 220/340 (64%), Positives = 259/340 (76%), Gaps = 19/340 (5%)

Query: 105 NGENSNGGRDKKGSMWHRMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGK 164
           NGENS G + KKGS W RMKWTDNVVRLLIA VACVGDDGT++ VEGLKRKSG+LQKKGK
Sbjct: 1   NGENSTGVKGKKGSPWQRMKWTDNVVRLLIAVVACVGDDGTLNAVEGLKRKSGLLQKKGK 60

Query: 165 WKTVSKIMISRGCQVSPQQCEDKFNDLNKRYKKLNDILGKGLTCQVVENPALIDTMSCSH 224
           WK VSK+MIS+GC VSPQQCEDKFNDLNKRYK+LN+ILG+G TC+VVENP L+D+M   H
Sbjct: 61  WKMVSKLMISKGCHVSPQQCEDKFNDLNKRYKRLNEILGRGTTCRVVENPVLMDSM--PH 118

Query: 225 LSAKAKDDVRKILGSKHLFYKEMFAYHNGKKIPNCHDIDLQGNDESEEEEADRNNDTDDD 284
           LSAKAKDDVRKILGSKHLFYKEM AYHNG++IPNC D+DLQG     E  +  NN + +D
Sbjct: 119 LSAKAKDDVRKILGSKHLFYKEMCAYHNGQRIPNCQDLDLQGCSLPLERSSKDNNGSGED 178

Query: 285 ESDNEDDRND----------------DEDEGRMAEIGERGKGNEEDGHSWPQSAGRSVFE 328
           E++   D +D                DED  R+ ++ E G+ N+E  H W QS GR+ F+
Sbjct: 179 EAEGNGDSDDGDDDDDESDNEENNNADEDGERVGQLCE-GRVNDEHAHLWSQSGGRNGFD 237

Query: 329 MEMARIFQDPSKSMWERREWIKKQKLALQNQRVSIQAQAFELEKQHLKWLRYCSKKDREL 388
           +EMA IFQDP+ S WER+EWIKKQ+L L  QRVSIQAQ FELEKQ  KWLRYCSKKD+E 
Sbjct: 238 VEMAAIFQDPAVSPWERKEWIKKQRLQLLEQRVSIQAQTFELEKQRFKWLRYCSKKDKEF 297

Query: 389 ERSRLENERIRLDNEQMILHLKQKQFELDLRKTEVSLEPT 428
           ER RLENE  +L+NEQ  L L+QKQ E+D R +E S +P 
Sbjct: 298 ERLRLENEWRKLENEQSALQLRQKQLEMDFRSSEPSFDPA 337

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072809|ref|XP_002303892.1| predicted protein [Populus trichocarpa] gi|222841324|gb|EEE78871.1| predicted protein [Populus trichocarpa]

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/352 (60%), Positives = 259/352 (73%), Gaps = 14/352 (3%)

Query: 89  NGNTSEEDEPSYTDEGNGENSNGGRDKKGSMWHRMKWTDNVVRLLIAAVACVGDDGTIDG 148
           +G+ SE+D+ S+ ++GNGENS G + K+GS W RMKWTDN+VRLLI+ VACVGDD T DG
Sbjct: 1   SGDGSEDDDQSFMEDGNGENSTGAKGKQGSPWQRMKWTDNIVRLLISVVACVGDDDTFDG 60

Query: 149 VEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRYKKLNDILGKGLTC 208
             GLKRKSG+LQKKGKWKTVSK+MI +GC VSPQQCEDKFNDLNKRYK+LN+ILG+G +C
Sbjct: 61  TGGLKRKSGLLQKKGKWKTVSKLMIGKGCHVSPQQCEDKFNDLNKRYKRLNEILGRGTSC 120

Query: 209 QVVENPALIDTMSCSHLSAKAKDDVRKILGSKHLFYKEMFAYHNGKKIPNCHDIDLQGND 268
           +VVENPAL+D+M   HLSAKAKDDVRKIL SKHLFYKE+ AYHNG++IPNC D  LQG  
Sbjct: 121 RVVENPALMDSM--PHLSAKAKDDVRKILSSKHLFYKEICAYHNGQRIPNCQDFGLQGCS 178

Query: 269 ESEEEEADRNNDTDDDESDNED-----------DRNDDEDEGRMAEIGERGKGNEEDGHS 317
              E  +   N +  DE +  D           D N DE+   + ++ ER   NEE  H 
Sbjct: 179 LPLERCSKDMNGSGGDEVEGNDDSDDDESNNEADNNADENGESVGQLCER-IVNEEHSHL 237

Query: 318 WPQSAGRSVFEMEMARIFQDPSKSMWERREWIKKQKLALQNQRVSIQAQAFELEKQHLKW 377
             QS  ++ F +EM  IF D + S WER+EWIKKQ+L L  QRV+I+AQAFELEKQ  KW
Sbjct: 238 CSQSGRQNSFGVEMTAIFHDTNVSPWERKEWIKKQRLQLLEQRVNIKAQAFELEKQQFKW 297

Query: 378 LRYCSKKDRELERSRLENERIRLDNEQMILHLKQKQFELDLRKTEVSLEPTS 429
           LRYCSKKD+E ER RLENER+RL+N Q    L+QKQ E+ LR +E + +PTS
Sbjct: 298 LRYCSKKDKEFERLRLENERLRLENRQSAFQLRQKQLEMGLRSSEPAYDPTS 349

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583354|ref|XP_002532438.1| transcription factor, putative [Ricinus communis] gi|223527858|gb|EEF29953.1| transcription factor, putative [Ricinus communis]

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 174/397 (43%), Positives = 247/397 (62%), Gaps = 44/397 (11%)

Query: 63  VKGSSRKGLPMNFGRGKMVSPINASNNGN--------TSEEDEPSYTDEGNGENSNGGRD 114
           V+ S+ +G P+  G  +    I +  + N         S+EDEPSYT++G   +++  R 
Sbjct: 47  VQPSTHEGFPLAMGTMRNSDQIISMTDYNKGDKGKNSASDEDEPSYTEDGADGHNDPSRG 106

Query: 115 KKGSMWHRMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMIS 174
           KKGS W R+KWTD +VRLLI AV+ +G+D T D   G++RK  +LQKKGKWK+VSK+M  
Sbjct: 107 KKGSPWQRVKWTDKMVRLLITAVSYIGEDVTSDYGSGMRRKFSVLQKKGKWKSVSKVMAE 166

Query: 175 RGCQVSPQQCEDKFNDLNKRYKKLNDILGKGLTCQVVENPALIDTMSCSHLSAKAKDDVR 234
           RG  VSPQQCEDKFNDLNKRYKKLND+LG+G +CQVVENPAL+D +   +L+ K KDDVR
Sbjct: 167 RGHLVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCQVVENPALLDVI--DYLTEKEKDDVR 224

Query: 235 KILGSKHLFYKEMFAYHNGKKIPNCHDIDLQ--------GNDESEEEEADRNNDTDDDES 286
           KIL SKHLFY+EM +YHNG ++   HD  LQ          D  + ++  R+   D DE 
Sbjct: 225 KILSSKHLFYEEMCSYHNGNRLHLPHDPALQRSLQLALRSKDGHDNDDVRRHQHDDMDED 284

Query: 287 DNEDDRND-DEDEGRMAEIGE----------------RGKGNE--------EDGHSWPQS 321
           D E + +D DE     A  GE                +G+G+E        +DG+    S
Sbjct: 285 DQEVETDDHDEFAETQASHGESRGIHGLLGGSAKRLRQGQGHEDVCFVNSSQDGNKGSHS 344

Query: 322 AGRSVFEMEMARIFQDPSKSMWERREWIKKQKLALQNQRVSIQAQAFELEKQHLKWLRYC 381
             + + E++M +   + +K+ W +++W++ + L L+ Q++ IQ +  ELEKQ  KW R+ 
Sbjct: 345 NFQ-ISEVDMNQNSPECTKAAWLQKQWMESRALQLEEQKLQIQIETLELEKQRFKWQRFS 403

Query: 382 SKKDRELERSRLENERIRLDNEQMILHLKQKQFELDL 418
            K+DRELE+ R+ENER++L+NE+M L LKQK+  +D 
Sbjct: 404 RKRDRELEKLRMENERMKLENERMALELKQKEISVDF 440

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	447
TAIR|locus:2014942	443	AT1G21200 [Arabidopsis thalian	0.563	0.568	0.466	5.4e-67
TAIR|locus:2100093	431	AT3G10040 [Arabidopsis thalian	0.892	0.925	0.364	6.4e-60
TAIR|locus:2036262	385	AT1G76870 "AT1G76870" [Arabido	0.357	0.415	0.508	9.9e-52

TAIR|locus:2014942 AT1G21200 [Arabidopsis thaliana (taxid:3702)]

 Score = 575 (207.5 bits), Expect = 5.4e-67, Sum P(2) = 5.4e-67
 Identities = 125/268 (46%), Positives = 166/268 (61%)

Query:     1 MDNSSGLGGRFLSG-QNVGLLDLESSIPRNQQNQLGHPSFSRPHQMNMMHGLENDHHHIG 59
             MD +   GG   SG  + G  DL+ S+  + Q+ +       P+   +  GL        
Sbjct:     1 MDGNFPQGGVVRSGASSYGGFDLQGSMRVHHQDSMNQQHRHNPNSRPLHEGLP------- 53

Query:    60 LLEVKGSS-RKGLPMNFGRGKMVSPINASNNGNTSEEDEPSYTDEG-NGENSNGGRDKKG 117
                V G +       N    +        N+   S++DEPS+T+EG +G ++   R  KG
Sbjct:    54 FTMVTGQTCDHHQNQNMSMSEQQKAEREKNS--VSDDDEPSFTEEGGDGVHNEANRSTKG 111

Query:   118 SMWHRMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGC 177
             S W R+KWTD +V+LLI AV+ +GDD +ID     +RK  +LQKKGKWK+VSK+M  RG 
Sbjct:   112 SPWQRVKWTDKMVKLLITAVSYIGDDSSIDSSS--RRKFAVLQKKGKWKSVSKVMAERGY 169

Query:   178 QVSPQQCEDKFNDLNKRYKKLNDILGKGLTCQVVENPALIDTMSCSHLSAKAKDDVRKIL 237
              VSPQQCEDKFNDLNKRYKKLND+LG+G +CQVVENPAL+D  S  +L+ K KDDVRKI+
Sbjct:   170 HVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCQVVENPALLD--SIGYLNDKEKDDVRKIM 227

Query:   238 GSKHLFYKEMFAYHNGKKIPNCHDIDLQ 265
              SKHLFY+EM +YHNG ++   HD+ LQ
Sbjct:   228 SSKHLFYEEMCSYHNGNRLHLPHDLALQ 255

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2100093 AT3G10040 [Arabidopsis thaliana (taxid:3702)]

 Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
 Identities = 160/439 (36%), Positives = 230/439 (52%)

Query:    13 SGQNVGLLDLESSIPRNQQNQLGHPSFSRPHQMNMMHGLENDHHHIGLLEVKGSSRKGLP 72
             SG +  +L LE  +P+N  N      F  PH      G +     I          K L 
Sbjct:     8 SGFSPRMLSLE--MPQNPPNPQNSIQFQHPHPYTTS-GDQQTQPPI----------KSLY 54

Query:    73 MNFGRGKMVSPINASNNGNTSEEDEPSYTDEG-NGENSNGGRDK-KGSMWHRMKWTDNVV 130
                 + K +SPI+    G   +ED  S +  G N E+S G   K K S WHRMKWTD +V
Sbjct:    55 PYASKPKQMSPISG---GGCDDEDRGSGSGSGCNPEDSAGTDGKRKLSQWHRMKWTDTMV 111

Query:   131 RLLIAAVACVGDD-GTIDGVEGLKRKSG---------ILQKKGKWKTVSKIMISRGCQVS 180
             RLLI AV  +GD+ G  D V+  K+  G         +LQKKGKWK+VS+ M+ +G  VS
Sbjct:   112 RLLIMAVFYIGDEAGLNDPVDAKKKTGGGGGGGGGGGMLQKKGKWKSVSRAMVEKGFSVS 171

Query:   181 PQQCEDKFNDLNKRYKKLNDILGKGLTCQVVENPALIDTMSCSHLSAKAKDDVRKILGSK 240
             PQQCEDKFNDLNKRYK++NDILGKG+ C+VVEN  L+++M   HL+ K KD+V+K+L SK
Sbjct:   172 PQQCEDKFNDLNKRYKRVNDILGKGIACRVVENQGLLESMD--HLTPKLKDEVKKLLNSK 229

Query:   241 HLFYKEMFAYHNGKKIPNCHDIDL-QGND-----ESXXXXXXXXXXXXXXXXXXXXXXXX 294
             HLF++EM AYHN       HD    Q N       S                        
Sbjct:   230 HLFFREMCAYHNSCGHLGGHDQQPPQQNPISIPIPSQQQNCFHAAEAGKMARIAERVEVE 289

Query:   295 XXXXGRMAEIGERG-KGNEEDGHSWPQSAGRSVFEM--EMARIFQDPSKSMWERREWIKK 351
                   MAE  E   + +EE+     +    +V  +  E A + +D  KS+WE++EWI++
Sbjct:   290 EEVESDMAEDSESEMEESEEEETRKKRRISTAVKRLREEAASVVEDVGKSVWEKKEWIRR 349

Query:   352 QKLALQNQRVSIQAQAFELEKQHLKWLRYCSKKDXXXXXXXXXXXXXXXDNEQMILHLKQ 411
             + L ++ +++  + +  E+EKQ +KW+RY SKK+               + E+MIL L++
Sbjct:   350 KMLEIEEKKIGYEWEGVEMEKQRVKWMRYRSKKEREMEKAKLDNQRRRLETERMILMLRR 409

Query:   412 KQFEL-DLRKTEVSLEPTS 429
              + EL +L+ +   ++P+S
Sbjct:   410 SEIELNELQSSGTRVDPSS 428

GO:0005886 "plasma membrane" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

TAIR|locus:2036262 AT1G76870 "AT1G76870" [Arabidopsis thaliana (taxid:3702)]

 Score = 453 (164.5 bits), Expect = 9.9e-52, Sum P(2) = 9.9e-52
 Identities = 88/173 (50%), Positives = 124/173 (71%)

Query:    93 SEEDEPSYTDEGNGENSNGGRDKKGSMWHRMKWTDNVVRLLIAAVACVGDDGTIDGVEGL 152
             SE+DE       +G+N    + K+ S W R+KW D +V+L+I A++ +G+D       G 
Sbjct:    61 SEDDELCLLSS-DGQN----KSKENSPWQRVKWMDKMVKLMITALSYIGEDS------GS 109

Query:   153 KRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRYKKLNDILGKGLTCQVVE 212
              +K  +LQKKGKW++VSK+M  RG  VSPQQCEDKFNDLNKRYKKLN++LG+G +C+VVE
Sbjct:   110 DKKFAVLQKKGKWRSVSKVMDERGYHVSPQQCEDKFNDLNKRYKKLNEMLGRGTSCEVVE 169

Query:   213 NPALIDTMSCSHLSAKAKDDVRKILGSKHLFYKEMFAYHNGKKIPNCHDIDLQ 265
             NP+L+D +   +L+ K KD+VR+I+ SKHLFY+EM +YHNG ++   HD  +Q
Sbjct:   170 NPSLLDKID--YLNEKEKDEVRRIMSSKHLFYEEMCSYHNGNRLHLPHDPAVQ 220

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	447
pfam13837	84	pfam13837, Myb_DNA-bind_4, Myb/SANT-like DNA-bindi	4e-11
cd12203	66	cd12203, GT1, GT1, myb-like, SANT family	4e-04
PTZ00007	337	PTZ00007, PTZ00007, (NAP-L) nucleosome assembly pr	0.004

>gnl|CDD|222409 pfam13837, Myb_DNA-bind_4, Myb/SANT-like DNA-binding domain

 Score = 58.8 bits (143), Expect = 4e-11
 Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 9/83 (10%)

Query: 122 RMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSP 181
           R KWTD   R LI            + ++ L ++    + K  W+ +++ M  RG   S 
Sbjct: 1   RNKWTDEETRALIEIWG--------ERLDSLFQRGT-KRNKHVWEEIAEKMAERGYNRSA 51

Query: 182 QQCEDKFNDLNKRYKKLNDILGK 204
           +QC++K+ +L K+YKK  +    
Sbjct: 52  EQCKEKWKNLKKKYKKEKESNKG 74

This presumed domain appears to be related to other Myb/SANT-like DNA binding domains. In particular pfam10545 seems most related. This family is greatly expanded in plants and appears in several proteins annotated as transposon proteins. Length = 84

>gnl|CDD|213402 cd12203, GT1, GT1, myb-like, SANT family

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 16/45 (35%), Positives = 24/45 (53%)

Query: 153 KRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRYKK 197
            R      KK  W+ ++  M   G   S +QC++K+ +LNK YKK
Sbjct: 20  SRFQETKSKKALWEEIAAKMRELGYNRSAKQCKEKWENLNKYYKK 64

GT-1, a myb-like protein, is one of the GT trihelix transcription factors. GT-1 binds the GT cis-element of rbcS-3A, a light-induced gene, as a dimer. Arabidopsis GT-1 is a trans-activator and acts in the stabilization of components of the transcrtiption pre-initiation complex comprised of TFIIA-TBP-TATA. The isolated GT-1 DNA-binding domain is sufficient to bind DNA. This region closely resemble the myb domain, but with longer helices. It has been proposed that GT-1 may respond to light signals via calcium-dependent phosphorylation to create a light-modulated molecular switch. These proteins are members of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of the DNA-binding Myb domains and is found in a diverse set of proteins. Length = 66

>gnl|CDD|240226 PTZ00007, PTZ00007, (NAP-L) nucleosome assembly protein -L; Provisional

 Score = 39.0 bits (91), Expect = 0.004
 Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 262 IDLQGNDESEEEEADRNNDTDDDESDNEDDRNDDEDE--GRMAEIGERGKGNEEDGHS 317
           ID   +  S+E++ D ++    D + ++ + + D +E   R  +     K NE    S
Sbjct: 280 IDEDSDYSSDEDDDDYDSYDSSDSASSDSNSDVDTNEEDDRGEKESNGAKSNELHLTS 337

Length = 337

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	447
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	99.41
KOG4282	345	consensus Transcription factor GT-2 and related pr	98.85
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	97.28
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	96.7
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	96.68
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	96.5
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	96.16
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	92.7
KOG4661	940	consensus Hsp27-ERE-TATA-binding protein/Scaffold	91.01
PF10545	85	MADF_DNA_bdg: Alcohol dehydrogenase transcription	89.75
smart00595	89	MADF subfamily of SANT domain.	87.17
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	87.14
KOG4661	940	consensus Hsp27-ERE-TATA-binding protein/Scaffold	81.22

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=99.41  E-value=4.6e-14  Score=111.32  Aligned_cols=80  Identities=31%  Similarity=0.536  Sum_probs=52.0

Q ss_pred             cccchhHHHHHHHHHHHh--hcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHHHHHHHH
Q 013250          122 RMKWTDNVVRLLIAAVAC--VGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRYKKLN  199 (447)
Q Consensus       122 RmkWtd~mvkllI~~v~~--~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnkRYKRln  199 (447)
                      |.+||+.+|.+||.++..  +..-++.   ++.+++      +-.|+.|+..|.+.||.+||.||.+||++|.++|+++.
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~---~~~~~~------~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k   71 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDN---GGKKRN------KKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIK   71 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH-----SS--------HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhh---hccccc------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            789999999999999988  2221211   111333      56899999999999999999999999999999999999


Q ss_pred             Hhh-cCCcceee
Q 013250          200 DIL-GKGLTCQV  210 (447)
Q Consensus       200 DiL-GRGtaC~V  210 (447)
                      +.. +.|++|..
T Consensus        72 ~~~~~~~~~w~~   83 (90)
T PF13837_consen   72 DRNKKSGSSWPY   83 (90)
T ss_dssp             SSSS----S---
T ss_pred             hcCCCCCCcCcC
Confidence            875 55655553

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=98.85  E-value=8.8e-08  Score=93.71  Aligned_cols=69  Identities=29%  Similarity=0.459  Sum_probs=59.5

Q ss_pred             cccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHHHHHHHHHh
Q 013250          122 RMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRYKKLNDI  201 (447)
Q Consensus       122 RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnkRYKRlnDi  201 (447)
                      ...|+..+|+.||-|...+...+.-    + ++|      .-.|+-||++|.+.||.+||.||..||.+|.|+||+-..-
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~----~-~~k------~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k~~  122 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRR----G-KLK------GPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEKAK  122 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHh----h-hhc------ccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence            6899999999999999955444433    2 555      7889999999999999999999999999999999997653

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=97.28  E-value=0.00046  Score=50.44  Aligned_cols=47  Identities=32%  Similarity=0.622  Sum_probs=40.2

Q ss_pred             cccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhH
Q 013250          122 RMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDL  191 (447)
Q Consensus       122 RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndL  191 (447)
                      |..||..+..+|+.||...|.+                    .|+.|+..|.   ..+|+.||..+|.++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~--------------------~W~~Ia~~~~---~~Rt~~qc~~~~~~~   47 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKD--------------------NWKKIAKRMP---GGRTAKQCRSRYQNL   47 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTT--------------------HHHHHHHHHS---SSSTHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCc--------------------HHHHHHHHcC---CCCCHHHHHHHHHhh
Confidence            5789999999999999988754                    7999999998   778999999999875

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=96.70  E-value=0.0021  Score=44.11  Aligned_cols=47  Identities=30%  Similarity=0.614  Sum_probs=40.3

Q ss_pred             ccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHH
Q 013250          123 MKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNK  193 (447)
Q Consensus       123 mkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnk  193 (447)
                      -.||..+..+|+.++...|.                    ..|+.|+..|.    ..||.+|..+|+.+.+
T Consensus         2 ~~Wt~~E~~~l~~~~~~~g~--------------------~~w~~Ia~~~~----~rt~~~~~~~~~~~~~   48 (49)
T smart00717        2 GEWTEEEDELLIELVKKYGK--------------------NNWEKIAKELP----GRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCHHHHHHHHHHHHHHCc--------------------CCHHHHHHHcC----CCCHHHHHHHHHHHcC
Confidence            46999999999999987654                    56999999996    7899999999987754

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=96.68  E-value=0.0066  Score=48.71  Aligned_cols=84  Identities=19%  Similarity=0.393  Sum_probs=62.6

Q ss_pred             cchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhc-ccccChhhhhhhhhhHHHHHHHHHHhh
Q 013250          124 KWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISR-GCQVSPQQCEDKFNDLNKRYKKLNDIL  202 (447)
Q Consensus       124 kWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ek-G~~vSpqQCedKfndLnkRYKRlnDiL  202 (447)
                      +||+.+++.||.+...-=.++.-.       ..+.+ |+.-|..|...|.++ |..++..||+.||+.|-+.|+.+..|+
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~-------~~~~f-k~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y~~~~~l~   72 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRP-------TNGGF-KKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDYRIWKELR   72 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCC-------CCCCc-CHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            699999999998876543332221       12222 256799999999885 667789999999999999999999999


Q ss_pred             cCCc------ceeeecCch
Q 013250          203 GKGL------TCQVVENPA  215 (447)
Q Consensus       203 GRGt------aC~VVENpa  215 (447)
                      +..+      +|.|+..++
T Consensus        73 ~~sg~gwd~~~~~i~a~~e   91 (96)
T PF12776_consen   73 NHSGFGWDPETGMITADDE   91 (96)
T ss_pred             cCCCceEcCCCCeEECCHH
Confidence            9876      455555444

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=96.50  E-value=0.0029  Score=47.51  Aligned_cols=43  Identities=28%  Similarity=0.697  Sum_probs=34.0

Q ss_pred             chhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhh-HH
Q 013250          125 WTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFND-LN  192 (447)
Q Consensus       125 Wtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfnd-Ln  192 (447)
                      ||..+..+|+.+|...|.                     .|+.|++.|.    .+||.||.++|+. |+
T Consensus         1 WT~eEd~~L~~~~~~~g~---------------------~W~~Ia~~l~----~Rt~~~~~~r~~~~l~   44 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGN---------------------DWKKIAEHLG----NRTPKQCRNRWRNHLR   44 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS----------------------HHHHHHHST----TS-HHHHHHHHHHTTS
T ss_pred             CCHHHHHHHHHHHHHHCc---------------------CHHHHHHHHC----cCCHHHHHHHHHHHCc
Confidence            999999999999875321                     5999999984    8999999999988 63

...

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=96.16  E-value=0.0099  Score=40.32  Aligned_cols=44  Identities=30%  Similarity=0.723  Sum_probs=37.6

Q ss_pred             cchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhH
Q 013250          124 KWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDL  191 (447)
Q Consensus       124 kWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndL  191 (447)
                      .||..+.++|+.++...|.                    +.|+.|++.|..    +|+.||..+|+.+
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~--------------------~~w~~Ia~~~~~----rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGK--------------------NNWEKIAKELPG----RTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCc--------------------CCHHHHHhHcCC----CCHHHHHHHHHHh
Confidence            4999999999999986653                    569999999965    7999999998765

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=92.70  E-value=0.21  Score=39.32  Aligned_cols=70  Identities=17%  Similarity=0.270  Sum_probs=50.0

Q ss_pred             cchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhccc-ccChhhhhhhhhhHHHHHHH
Q 013250          124 KWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGC-QVSPQQCEDKFNDLNKRYKK  197 (447)
Q Consensus       124 kWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~-~vSpqQCedKfndLnkRYKR  197 (447)
                      .||..+..+||..|..   ....--+ ..........|...|..|+..+...|. ..|+.||..+|.||-..=|+
T Consensus         4 ~fs~~E~~~Lv~~v~~---~~~il~~-k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~Kk   74 (78)
T PF13873_consen    4 NFSEEEKEILVELVEK---HKDILEN-KFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAKK   74 (78)
T ss_pred             CCCHHHHHHHHHHHHH---hHHHHhc-ccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence            5889999998876542   1111100 001123455678999999999999888 89999999999999877665

>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]

Probab=91.01  E-value=0.52  Score=52.13  Aligned_cols=60  Identities=28%  Similarity=0.389  Sum_probs=35.8

Q ss_pred             hcccccChhhhhhhhhhHHHHHHHHHHhhcCCcceeeecCchh-------hcccCcccCChhhHHHHHhhhcccchhHHH
Q 013250          174 SRGCQVSPQQCEDKFNDLNKRYKKLNDILGKGLTCQVVENPAL-------IDTMSCSHLSAKAKDDVRKILGSKHLFYKE  246 (447)
Q Consensus       174 ekG~~vSpqQCedKfndLnkRYKRlnDiLGRGtaC~VVENpaL-------LD~md~~~LS~K~KdevRKiLsSKHLFyeE  246 (447)
                      .+.|-||---.--.-.||.+.|-+.-.++|    ..||-|---       .=+|.       .-+||-|-++  ||+--|
T Consensus       405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvG----AKVVTNaRsPGaRCYGfVTMS-------ts~eAtkCI~--hLHrTE  471 (940)
T KOG4661|consen  405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVG----AKVVTNARSPGARCYGFVTMS-------TSAEATKCIE--HLHRTE  471 (940)
T ss_pred             ccceeeeccccchhhhHHHHHHHHhcceec----eeeeecCCCCCcceeEEEEec-------chHHHHHHHH--Hhhhhh
Confidence            455666665555566677777776655555    467766432       12444       3467777765  666555

>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats

Probab=89.75  E-value=0.61  Score=35.85  Aligned_cols=40  Identities=18%  Similarity=0.601  Sum_probs=33.5

Q ss_pred             hhccchhHHHHHHhhcccccChhhhhhhhhhHHHHHHHHHHhh
Q 013250          160 QKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRYKKLNDIL  202 (447)
Q Consensus       160 QKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnkRYKRlnDiL  202 (447)
                      .|.-.|..|+..|   |..++++.|..+|+.|..+|.|.-.-+
T Consensus        24 ~r~~aw~~Ia~~l---~~~~~~~~~~~~w~~Lr~~y~~~~~~~   63 (85)
T PF10545_consen   24 LREEAWQEIAREL---GKEFSVDDCKKRWKNLRDRYRRELKKI   63 (85)
T ss_pred             HHHHHHHHHHHHH---ccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677899999999   666889999999999999998765433

The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.

>smart00595 MADF subfamily of SANT domain

Probab=87.17  E-value=0.7  Score=36.79  Aligned_cols=35  Identities=17%  Similarity=0.541  Sum_probs=30.6

Q ss_pred             ccchhHHHHHHhhcccccChhhhhhhhhhHHHHHHHHHHh
Q 013250          162 KGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRYKKLNDI  201 (447)
Q Consensus       162 KgkWk~vs~~M~ekG~~vSpqQCedKfndLnkRYKRlnDi  201 (447)
                      .-.|..|+..|..     ++..|..||+.|--+|.|..--
T Consensus        27 ~~aW~~Ia~~l~~-----~~~~~~~kw~~LR~~y~~e~~r   61 (89)
T smart00595       27 RKAWEEIAEELGL-----SVEECKKRWKNLRDRYRRELKR   61 (89)
T ss_pred             HHHHHHHHHHHCc-----CHHHHHHHHHHHHHHHHHHHHH
Confidence            4489999999966     9999999999999999987543

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=87.14  E-value=0.95  Score=35.55  Aligned_cols=44  Identities=23%  Similarity=0.539  Sum_probs=34.2

Q ss_pred             ccccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccch---hHHHHHHhhcccccChhhhhh
Q 013250          121 HRMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKW---KTVSKIMISRGCQVSPQQCED  186 (447)
Q Consensus       121 ~RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkW---k~vs~~M~ekG~~vSpqQCed  186 (447)
                      .|+-||+.+-..|+.|+..+|.                    |.|   +.|+..|...  .+|+.||.-
T Consensus         2 ~r~~WT~eeh~~Fl~ai~~~G~--------------------g~~a~pk~I~~~~~~~--~lT~~qV~S   48 (57)
T TIGR01557         2 PRVVWTEDLHDRFLQAVQKLGG--------------------PDWATPKRILELMVVD--GLTRDQVAS   48 (57)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCC--------------------CcccchHHHHHHcCCC--CCCHHHHHH
Confidence            4899999999999999999853                    446   6677777642  359999875

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]

Probab=81.22  E-value=3.7  Score=45.81  Aligned_cols=17  Identities=47%  Similarity=0.939  Sum_probs=8.4

Q ss_pred             HHHhhhhhhhhhhhhhh
Q 013250          388 LERSRLENERIRLDNEQ  404 (447)
Q Consensus       388 lEk~rLENERmrLENER  404 (447)
                      ||+-|||.|||++|.+|
T Consensus       670 mErERLEreRM~ve~eR  686 (940)
T KOG4661|consen  670 MERERLERERMKVEEER  686 (940)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            44445555555555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	447
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	3e-09

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Length = 86

 Score = 52.9 bits (127), Expect = 3e-09
 Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 11/79 (13%)

Query: 122 RMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSP 181
              W  +  R LI             G++GL   S     K  W+ +S  M  +G   SP
Sbjct: 4   AETWVQDETRSLIMFRR---------GMDGLFNTSK--SNKHLWEQISSKMREKGFDRSP 52

Query: 182 QQCEDKFNDLNKRYKKLND 200
             C DK+ +L K +KK   
Sbjct: 53  DMCTDKWRNLLKEFKKAKH 71

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	447
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	99.56
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	97.17
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	97.16
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	96.71
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	96.33
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	96.13
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	96.09
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	95.99
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	95.91
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	95.7
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	95.41
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	95.38
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	95.2
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	94.82
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	94.62
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	94.41
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	94.26
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	93.77
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	93.76
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	93.1
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	93.03
2cjj_A	93	Radialis; plant development, DNA-binding protein,	92.41
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	92.04
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	91.92
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	91.84
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	91.76
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	91.75
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	91.71
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	91.2
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	89.73
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	87.95
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	87.91
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	86.88
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	85.86
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	85.11
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	84.78
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	81.52
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	80.93

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=99.56  E-value=3.5e-16  Score=124.89  Aligned_cols=70  Identities=27%  Similarity=0.408  Sum_probs=61.8

Q ss_pred             cccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHHHHHHHHHh
Q 013250          122 RMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRYKKLNDI  201 (447)
Q Consensus       122 RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnkRYKRlnDi  201 (447)
                      +..||+.+|++||.|+.+....+..    + ++      ++.+|+.||..|.++||.|||+||++||++|+++||++.|.
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~----~-~~------~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~~   72 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNT----S-KS------NKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKHH   72 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHH----S-SC------CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSSC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHc----c-cc------chHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            3579999999999999987766643    3 33      48899999999999999999999999999999999999886


Q ss_pred             h
Q 013250          202 L  202 (447)
Q Consensus       202 L  202 (447)
                      -
T Consensus        73 ~   73 (86)
T 2ebi_A           73 D   73 (86)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=97.17  E-value=0.00044  Score=53.35  Aligned_cols=51  Identities=22%  Similarity=0.408  Sum_probs=41.0

Q ss_pred             ccccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHH
Q 013250          121 HRMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNK  193 (447)
Q Consensus       121 ~RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnk  193 (447)
                      .|-+||..+..+|+.+|...|                    .++|..|++.+.-.  .+|+.||.++|.+|.|
T Consensus        10 kk~~WT~eED~~L~~~V~~~G--------------------~~~W~~Ia~~~~~~--~Rt~~qcr~Rw~nl~k   60 (64)
T 3sjm_A           10 KKQKWTVEESEWVKAGVQKYG--------------------EGNWAAISKNYPFV--NRTAVMIKDRWRTMKR   60 (64)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHC--------------------TTCHHHHHHHSCCS--SCCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHccC--------------------CCchHHHHhhcCCC--CCCHHHHHHHHHHHhc
Confidence            356899999999999998663                    24699999875311  4899999999999875

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=97.16  E-value=0.00044  Score=50.65  Aligned_cols=49  Identities=18%  Similarity=0.328  Sum_probs=41.3

Q ss_pred             cccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhccc-ccChhhhhhhhhhHHH
Q 013250          122 RMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGC-QVSPQQCEDKFNDLNK  193 (447)
Q Consensus       122 RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~-~vSpqQCedKfndLnk  193 (447)
                      |-.||..+..+||.+|...|                    .++|..|+..|.   | .+|+.||.+.|+++.|
T Consensus         2 r~~WT~eEd~~L~~~v~~~G--------------------~~~W~~Ia~~~~---~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            2 RQAWLWEEDKNLRSGVRKYG--------------------EGNWSKILLHYK---FNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCHHHHHHHHHHHHHHC--------------------TTCHHHHHHHSC---CSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHC--------------------cCCHHHHHHHcC---CCCCCHHHHHHHHHHHHc
Confidence            45799999999999998653                    247999999984   5 4999999999999875

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=96.71  E-value=0.002  Score=49.38  Aligned_cols=50  Identities=18%  Similarity=0.326  Sum_probs=41.7

Q ss_pred             ccccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhccc-ccChhhhhhhhhhHHH
Q 013250          121 HRMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGC-QVSPQQCEDKFNDLNK  193 (447)
Q Consensus       121 ~RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~-~vSpqQCedKfndLnk  193 (447)
                      .|-.||..+..+||.+|...|                    .++|..|++.|.   | .+|+.||.+.|+++.+
T Consensus         9 ~r~~WT~eED~~L~~~v~~~G--------------------~~~W~~Ia~~~~---~~~Rt~~qcr~Rw~~~l~   59 (69)
T 1ity_A            9 KRQAWLWEEDKNLRSGVRKYG--------------------EGNWSKILLHYK---FNNRTSVMLKDRWRTMKK   59 (69)
T ss_dssp             SCCCCCHHHHHHHHHHHHHHC--------------------SSCHHHHHHHSC---CSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHC--------------------CCcHHHHHHHcC---cCCCCHHHHHHHHHHHcC
Confidence            356799999999999998653                    257999999984   4 7999999999998765

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=96.33  E-value=0.0053  Score=49.93  Aligned_cols=52  Identities=21%  Similarity=0.356  Sum_probs=41.5

Q ss_pred             cchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHHHH
Q 013250          124 KWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRY  195 (447)
Q Consensus       124 kWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnkRY  195 (447)
                      .||..++..||..|.-.|                    .|+|..|++.....=-.+|+-||.|||++|.|+-
T Consensus         2 ~WT~eEd~~L~~gv~k~G--------------------~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~   53 (83)
T 2ckx_A            2 PFSVAEVEALVEAVEHLG--------------------TGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA   53 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHC--------------------SSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHC--------------------CCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence            599999999999998764                    4789999986321113699999999999998754

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=96.13  E-value=0.013  Score=50.94  Aligned_cols=55  Identities=25%  Similarity=0.355  Sum_probs=44.3

Q ss_pred             ccccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHHHH
Q 013250          121 HRMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRY  195 (447)
Q Consensus       121 ~RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnkRY  195 (447)
                      .|-.||..++..|+..|.-.|                    .|+|..|.+.+-..=-.+|+-||.|||.+|.|.-
T Consensus        30 ~r~~WT~EEd~~L~~gV~k~G--------------------~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~   84 (122)
T 2roh_A           30 IRRPFTVAEVELLVEAVEHLG--------------------TGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA   84 (122)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHS--------------------SSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHC--------------------CCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence            356899999999999998764                    3789999986532113699999999999998754

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=96.09  E-value=0.0061  Score=44.04  Aligned_cols=46  Identities=20%  Similarity=0.490  Sum_probs=38.6

Q ss_pred             cccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhH
Q 013250          122 RMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDL  191 (447)
Q Consensus       122 RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndL  191 (447)
                      |-.||..+-.+|+.+|...|                    .++|..|++.|.    .+|+.||...|+++
T Consensus         3 ~~~Wt~eED~~L~~~v~~~G--------------------~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~   48 (52)
T 1guu_A            3 KTRWTREEDEKLKKLVEQNG--------------------TDDWKVIANYLP----NRTDVQCQHRWQKV   48 (52)
T ss_dssp             CCCCCHHHHHHHHHHHHHHC--------------------SSCHHHHHHTST----TCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhC--------------------CCCHHHHHHHcC----CCCHHHHHHHHHHH
Confidence            45799999999999998653                    257999999985    48999999999875

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=95.99  E-value=0.0085  Score=52.08  Aligned_cols=55  Identities=22%  Similarity=0.342  Sum_probs=45.3

Q ss_pred             ccccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHHHH
Q 013250          121 HRMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRY  195 (447)
Q Consensus       121 ~RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnkRY  195 (447)
                      .|-.||..++.+||..|.-.|                    .|+|..|.+.+..---.+|+-||.|||++|.+.-
T Consensus        16 ~r~~WT~EEd~~L~~gV~k~G--------------------~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~   70 (121)
T 2juh_A           16 IRRPFSVAEVEALVEAVEHLG--------------------TGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA   70 (121)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHG--------------------GGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHC--------------------CCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence            456899999999999998764                    3799999998744224799999999999998753

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=95.91  E-value=0.005  Score=52.26  Aligned_cols=54  Identities=22%  Similarity=0.350  Sum_probs=42.8

Q ss_pred             ccccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHHH
Q 013250          121 HRMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKR  194 (447)
Q Consensus       121 ~RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnkR  194 (447)
                      .|-.||..++..|+..|.-.|                    .|+|..|.+.+.+-=-.+|+-||.|||.+|.|.
T Consensus        12 ~r~~WT~EEd~~L~~gV~k~G--------------------~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~   65 (105)
T 2aje_A           12 IRRPFSVAEVEALVQAVEKLG--------------------TGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT   65 (105)
T ss_dssp             CCCSCCHHHHHHHHHHHHHHC--------------------SSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHhC--------------------CCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence            466799999999999998664                    378999988542111369999999999999874

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=95.70  E-value=0.015  Score=43.65  Aligned_cols=48  Identities=25%  Similarity=0.458  Sum_probs=39.4

Q ss_pred             CccccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhH
Q 013250          120 WHRMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDL  191 (447)
Q Consensus       120 W~RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndL  191 (447)
                      -.|-+||..+-.+||.+|...|.                    ++|+.|++.|.    .+|+.||...|+++
T Consensus         6 ~~~~~WT~eED~~L~~~v~~~G~--------------------~~W~~Ia~~~~----~Rt~~qcr~r~~~~   53 (60)
T 1x41_A            6 SGDPSWTAQEEMALLEAVMDCGF--------------------GNWQDVANQMC----TKTKEECEKHYMKY   53 (60)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHTCT--------------------TCHHHHHHHHT----TSCHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCc--------------------CcHHHHHHHhC----CCCHHHHHHHHHHH
Confidence            34567999999999999987642                    47999999994    38999999988754

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=95.41  E-value=0.015  Score=43.26  Aligned_cols=46  Identities=26%  Similarity=0.476  Sum_probs=38.1

Q ss_pred             cccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhH
Q 013250          122 RMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDL  191 (447)
Q Consensus       122 RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndL  191 (447)
                      |-.||..+-.+|+.+|...|                    .++|..|++.|.    .+|+.||...|+++
T Consensus         8 k~~Wt~eED~~L~~~v~~~G--------------------~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~   53 (60)
T 2d9a_A            8 KVKWTHEEDEQLRALVRQFG--------------------QQDWKFLASHFP----NRTDQQCQYRWLRV   53 (60)
T ss_dssp             CSCCCHHHHHHHHHHHHHTC--------------------TTCHHHHHHHCS----SSCHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhC--------------------CCCHHHHHHHcc----CCCHHHHHHHHHHH
Confidence            45799999999999998753                    146999999985    38999999998764

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=95.38  E-value=0.03  Score=41.88  Aligned_cols=47  Identities=21%  Similarity=0.506  Sum_probs=38.6

Q ss_pred             cccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhH
Q 013250          122 RMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDL  191 (447)
Q Consensus       122 RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndL  191 (447)
                      +-+||..+-.+|+.+|...|                    .+.|..|++.|..   .+|+.||...|+++
T Consensus         9 ~~~WT~eED~~L~~~v~~~G--------------------~~~W~~IA~~~~~---~Rt~~qcr~r~~~~   55 (58)
T 2elk_A            9 DENWGADEELLLIDACETLG--------------------LGNWADIADYVGN---ARTKEECRDHYLKT   55 (58)
T ss_dssp             CCCCCHHHHHHHHHHHHHTT--------------------TTCHHHHHHHHCS---SCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHC--------------------cCCHHHHHHHHCC---CCCHHHHHHHHHHH
Confidence            45799999999999997653                    2579999999952   57999999988754

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.20  E-value=0.028  Score=43.02  Aligned_cols=45  Identities=24%  Similarity=0.552  Sum_probs=37.6

Q ss_pred             cccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhh
Q 013250          122 RMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFND  190 (447)
Q Consensus       122 RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfnd  190 (447)
                      |-.||..+-.+|+.+|...|                    .++|..|++.|.    .+|+.||...|++
T Consensus         9 ~~~Wt~eED~~L~~~v~~~G--------------------~~~W~~Ia~~l~----~Rt~~qcr~Rw~~   53 (70)
T 2dim_A            9 GGVWRNTEDEILKAAVMKYG--------------------KNQWSRIASLLH----RKSAKQCKARWYE   53 (70)
T ss_dssp             TCCCCHHHHHHHHHHHHHTC--------------------SSCHHHHHHHST----TCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHC--------------------cCCHHHHHHHhc----CCCHHHHHHHHHH
Confidence            34799999999999998654                    247999999996    5899999988875

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.82  E-value=0.056  Score=40.89  Aligned_cols=47  Identities=19%  Similarity=0.497  Sum_probs=37.7

Q ss_pred             ccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHHHH
Q 013250          123 MKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRY  195 (447)
Q Consensus       123 mkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnkRY  195 (447)
                      -.||..+-.+||.+|...|                    . +|..|++ |.  |  +|+.||..-|+.+.+.-
T Consensus        10 ~~WT~eED~~L~~~~~~~g--------------------~-~W~~Ia~-~~--g--Rt~~qcr~Rw~~~l~~~   56 (66)
T 2din_A           10 TEWSREEEEKLLHLAKLMP--------------------T-QWRTIAP-II--G--RTAAQCLEHYEFLLDKA   56 (66)
T ss_dssp             CCCCHHHHHHHHHHHHHCT--------------------T-CHHHHHH-HH--S--SCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcC--------------------C-CHHHHhc-cc--C--cCHHHHHHHHHHHhChH
Confidence            4699999999999976532                    1 6999999 55  4  99999999998876543

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=94.62  E-value=0.026  Score=40.81  Aligned_cols=46  Identities=22%  Similarity=0.471  Sum_probs=37.6

Q ss_pred             cccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhH
Q 013250          122 RMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDL  191 (447)
Q Consensus       122 RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndL  191 (447)
                      +-.||..+-.+|+.+|...|                    .+.|..|++.|.    .+|+.||...|++.
T Consensus         3 k~~Wt~eED~~L~~~v~~~G--------------------~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~   48 (52)
T 1gvd_A            3 KGPWTKEEDQRLIKLVQKYG--------------------PKRWSVIAKHLK----GRIGKQCRERWHNH   48 (52)
T ss_dssp             CCSCCHHHHHHHHHHHHHHC--------------------TTCHHHHHTTST----TCCHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHC--------------------cChHHHHHHHcC----CCCHHHHHHHHHHH
Confidence            34799999999999998654                    235999999984    47999999998764

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=94.41  E-value=0.069  Score=42.46  Aligned_cols=51  Identities=20%  Similarity=0.367  Sum_probs=41.8

Q ss_pred             ccccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHH
Q 013250          121 HRMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLN  192 (447)
Q Consensus       121 ~RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLn  192 (447)
                      -+-.||..+-++|+.|++.+|.+       +          ..+|..|++.|-    -+|+.||...|+.|.
T Consensus        17 ~~~~WT~eEd~~L~~al~~~g~~-------~----------~~rW~~IA~~vp----GRT~~qcr~Ry~~L~   67 (73)
T 2cqr_A           17 AEEPWTQNQQKLLELALQQYPRG-------S----------SDCWDKIARCVP----SKSKEDCIARYKLLV   67 (73)
T ss_dssp             SSCCCCHHHHHHHHHHHHHSCSS-------S----------HHHHHHHGGGCS----SSCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCC-------C----------CchHHHHHHHcC----CCCHHHHHHHHHHHH
Confidence            44569999999999999998864       1          246999999986    389999998888774

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=94.26  E-value=0.078  Score=42.42  Aligned_cols=46  Identities=24%  Similarity=0.423  Sum_probs=38.0

Q ss_pred             ccccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhH
Q 013250          121 HRMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDL  191 (447)
Q Consensus       121 ~RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndL  191 (447)
                      .+-.||..+..+|+.||...|                     +.|..|++.|.    .+|+.||...|+.|
T Consensus        17 ~~~~WT~eEd~~Ll~~v~~~G---------------------~~W~~IA~~v~----~RT~~qcr~r~~~~   62 (79)
T 2yus_A           17 AGREWTEQETLLLLEALEMYK---------------------DDWNKVSEHVG----SRTQDECILHFLRL   62 (79)
T ss_dssp             CSCCCCHHHHHHHHHHHHHSS---------------------SCHHHHHHHHS----SCCHHHHHHHHTTS
T ss_pred             cCCCcCHHHHHHHHHHHHHhC---------------------CCHHHHHHHcC----CCCHHHHHHHHHHh
Confidence            356799999999999987543                     46999999985    48999999988765

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.77  E-value=0.018  Score=44.54  Aligned_cols=48  Identities=10%  Similarity=0.197  Sum_probs=38.9

Q ss_pred             ccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhh
Q 013250          123 MKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFN  189 (447)
Q Consensus       123 mkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfn  189 (447)
                      -.||..+-.+|+.+|...|.+...               ..+|..|++.|.    .+|+.||...|+
T Consensus         9 ~~WT~eEd~~L~~~v~~~g~~~~~---------------~~~W~~IA~~~~----~Rt~~qcr~r~~   56 (75)
T 2yum_A            9 QLWTVEEQKKLEQLLIKYPPEEVE---------------SRRWQKIADELG----NRTAKQVASQVQ   56 (75)
T ss_dssp             SCCCHHHHHHHHHHHHHSCCCSCH---------------HHHHHHHHHHHS----SSCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCCCCC---------------cccHHHHHHHhC----CCCHHHHHHHHH
Confidence            369999999999999988854311               257999999995    389999998884

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=93.76  E-value=0.098  Score=41.39  Aligned_cols=48  Identities=19%  Similarity=0.430  Sum_probs=39.1

Q ss_pred             cchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHH
Q 013250          124 KWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNK  193 (447)
Q Consensus       124 kWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnk  193 (447)
                      .||..+.++|+.|++.++.+.                 -..|+.|+..|   |  +|+.||..+|+.|..
T Consensus        10 ~WT~eE~k~fe~al~~~p~~t-----------------~~RW~~IA~~l---g--Rt~~eV~~~y~~L~~   57 (72)
T 2cqq_A           10 EWTEEDLSQLTRSMVKFPGGT-----------------PGRWEKIAHEL---G--RSVTDVTTKAKQLKD   57 (72)
T ss_dssp             CCCHHHHHHHHHHHHHSCTTC-----------------TTHHHHHHHHH---T--SCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCCC-----------------CcHHHHHHHHh---C--CCHHHHHHHHHHHHH
Confidence            599999999999999887542                 13599999998   4  799999987777643

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=93.10  E-value=0.1  Score=42.64  Aligned_cols=44  Identities=30%  Similarity=0.595  Sum_probs=36.6

Q ss_pred             ccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhh
Q 013250          123 MKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFND  190 (447)
Q Consensus       123 mkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfnd  190 (447)
                      .+||..+-.+|+.+|...|                    .+.|..|+..|.    .+|+.||-+.|++
T Consensus         2 ~~Wt~eED~~L~~~v~~~g--------------------~~~W~~Ia~~~~----~Rt~~qcr~Rw~~   45 (107)
T 2k9n_A            2 VKFTEEEDLKLQQLVMRYG--------------------AKDWIRISQLMI----TRNPRQCRERWNN   45 (107)
T ss_dssp             CSSCHHHHHHHHHHHHHHC--------------------SSCHHHHHHHTT----TSCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHC--------------------CCCHHHHhhhcC----CCCHHHHHHHHHH
Confidence            5799999999999998764                    146999999996    4799999987754

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=93.03  E-value=0.14  Score=41.88  Aligned_cols=47  Identities=21%  Similarity=0.365  Sum_probs=40.3

Q ss_pred             cchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHHHH
Q 013250          124 KWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRY  195 (447)
Q Consensus       124 kWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnkRY  195 (447)
                      .||..+-.+||.+|...|                     .+|..|++.|.    .+|+.||...|+.|.++-
T Consensus        55 ~WT~eEd~~L~~~~~~~G---------------------~~W~~Ia~~l~----gRt~~~~k~rw~~l~r~~  101 (107)
T 2k9n_A           55 PWSPEEDMLLDQKYAEYG---------------------PKWNKISKFLK----NRSDNNIRNRWMMIARHR  101 (107)
T ss_dssp             CCCHHHHHHHHHHHHHTC---------------------SCHHHHHHHHS----SSCHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhC---------------------cCHHHHHHHCC----CCCHHHHHHHHHHHHhhH
Confidence            689999999999998764                     26999999884    489999999999988764

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=92.41  E-value=0.23  Score=41.17  Aligned_cols=52  Identities=19%  Similarity=0.450  Sum_probs=43.1

Q ss_pred             cchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHHHHH
Q 013250          124 KWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRYK  196 (447)
Q Consensus       124 kWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnkRYK  196 (447)
                      .||..+-++|+.|++.+|.+.                 -..|..|++.|-  |  +|+.||...|+.|...-+
T Consensus        10 ~WT~eEd~~L~~al~~~~~~~-----------------~~rW~~IA~~vp--G--RT~~q~k~ry~~l~~dv~   61 (93)
T 2cjj_A           10 PWSAKENKAFERALAVYDKDT-----------------PDRWANVARAVE--G--RTPEEVKKHYEILVEDIK   61 (93)
T ss_dssp             SCCHHHHHHHHHHHHHSCTTC-----------------TTHHHHHHHHST--T--CCHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCC-----------------CchHHHHHHHcC--C--CCHHHHHHHHHHHHHHHH
Confidence            599999999999999887641                 246999999995  3  899999999999876533

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=92.04  E-value=0.11  Score=42.02  Aligned_cols=45  Identities=20%  Similarity=0.479  Sum_probs=36.5

Q ss_pred             cccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhh
Q 013250          122 RMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFND  190 (447)
Q Consensus       122 RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfnd  190 (447)
                      +-.||..+-.+|+.+|...|.                    +.|..|++.|.    .+|+.||.+.|.+
T Consensus         4 k~~WT~eED~~L~~~v~~~g~--------------------~~W~~Ia~~l~----~Rt~~qcr~Rw~~   48 (105)
T 1gv2_A            4 KGPWTKEEDQRVIKLVQKYGP--------------------KRWSVIAKHLK----GRIGKQCRERWHN   48 (105)
T ss_dssp             CSCCCHHHHHHHHHHHHHHCT--------------------TCHHHHHTTST----TCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCC--------------------CcHHHHhhhhc----CCCHHHHHHHHHh
Confidence            347999999999999986642                    36999999985    4799999987655

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=91.92  E-value=0.12  Score=43.43  Aligned_cols=47  Identities=15%  Similarity=0.425  Sum_probs=39.7

Q ss_pred             cchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHHHH
Q 013250          124 KWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRY  195 (447)
Q Consensus       124 kWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnkRY  195 (447)
                      .||..+-.+|+.+|...|.                     +|..|++.|.    .+|+.||...|+.|.++.
T Consensus        64 ~WT~eEd~~L~~~v~~~G~---------------------~W~~Ia~~l~----gRt~~~~k~rw~~l~~k~  110 (126)
T 3osg_A           64 PWTAEEDALLVQKIQEYGR---------------------QWAIIAKFFP----GRTDIHIKNRWVTISNKL  110 (126)
T ss_dssp             CCCHHHHHHHHHHHHHHCS---------------------CHHHHHTTST----TCCHHHHHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHHHHHCc---------------------CHHHHHHHcC----CCCHHHHHHHHHHHHHhc
Confidence            5999999999999987741                     4999998774    489999999999988763

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=91.84  E-value=0.27  Score=37.87  Aligned_cols=48  Identities=23%  Similarity=0.355  Sum_probs=39.5

Q ss_pred             cccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHHH
Q 013250          122 RMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKR  194 (447)
Q Consensus       122 RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnkR  194 (447)
                      +-.||..+-.+||.+|...|.                     +|..|++.|.    .+|+.||...|+.+-++
T Consensus         9 ~~~WT~eEd~~l~~~~~~~G~---------------------~W~~Ia~~~~----~Rt~~q~k~r~~~~l~~   56 (72)
T 2cu7_A            9 SVKWTIEEKELFEQGLAKFGR---------------------RWTKISKLIG----SRTVLQVKSYARQYFKN   56 (72)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCS---------------------CHHHHHHHHS----SSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCc---------------------CHHHHHHHcC----CCCHHHHHHHHHHHHHH
Confidence            346999999999999987651                     5999999885    37999999999877554

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=91.76  E-value=0.25  Score=38.97  Aligned_cols=50  Identities=18%  Similarity=0.315  Sum_probs=40.3

Q ss_pred             CccccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhh
Q 013250          120 WHRMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFN  189 (447)
Q Consensus       120 W~RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfn  189 (447)
                      =.||.||..+-+.|+.||..+|-|                  |..||.|-..|...|  ++.+|.+--..
T Consensus         5 k~r~~WT~elH~~Fv~Av~~LG~~------------------~AtPk~Il~~M~v~g--LT~~~VkSHLQ   54 (64)
T 1irz_A            5 KPRVLWTHELHNKFLAAVDHLGVE------------------RAVPKKILDLMNVDK--LTRENVASHLQ   54 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTT------------------TCCHHHHHHHHCCTT--CCHHHHHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHHhCCC------------------CCCcHHHHHHcCCCC--CCHHHHHHHHH
Confidence            369999999999999999999833                  466888889998877  67777775433

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=91.75  E-value=0.18  Score=40.05  Aligned_cols=43  Identities=19%  Similarity=0.305  Sum_probs=36.2

Q ss_pred             cchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHH
Q 013250          124 KWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLN  192 (447)
Q Consensus       124 kWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLn  192 (447)
                      .||..+-.+||.+|...|                     .+|..|++.|     -+|+.||...|+-|.
T Consensus        25 ~wT~EED~~L~~l~~~~G---------------------~kW~~IA~~l-----gRt~~q~knRw~~L~   67 (73)
T 2llk_A           25 KYTPEEIEKLKELRIKHG---------------------NDWATIGAAL-----GRSASSVKDRCRLMK   67 (73)
T ss_dssp             SSCHHHHHHHHHHHHHHS---------------------SCHHHHHHHH-----TSCHHHHHHHHHHCS
T ss_pred             CCCHHHHHHHHHHHHHHC---------------------CCHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence            699999999999998764                     1399999999     379999999888663

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=91.71  E-value=0.16  Score=42.77  Aligned_cols=44  Identities=27%  Similarity=0.541  Sum_probs=36.3

Q ss_pred             cccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhh
Q 013250          122 RMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFND  190 (447)
Q Consensus       122 RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfnd  190 (447)
                      |-+||..+-.+|+.+|...|.                     .|+.|+..|.    .+|+.||.+.|++
T Consensus        11 k~~WT~eED~~L~~~v~~~G~---------------------~W~~Ia~~~~----~Rt~~qcr~Rw~~   54 (126)
T 3osg_A           11 KQKFTPEEDEMLKRAVAQHGS---------------------DWKMIAATFP----NRNARQCRDRWKN   54 (126)
T ss_dssp             SCCCCHHHHHHHHHHHHHHTT---------------------CHHHHHHTCT----TCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCC---------------------CHHHHHHHcC----CCCHHHHHHHHhh
Confidence            457999999999999986531                     4999999885    3799999988875

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=91.20  E-value=0.11  Score=41.92  Aligned_cols=46  Identities=20%  Similarity=0.518  Sum_probs=38.4

Q ss_pred             cchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHHH
Q 013250          124 KWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKR  194 (447)
Q Consensus       124 kWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnkR  194 (447)
                      .||..+-.+|+.+|...|                     .+|..|++.|.    .+|+.||...|+.|.+|
T Consensus        58 ~Wt~eEd~~L~~~~~~~G---------------------~~W~~Ia~~l~----gRt~~~~k~rw~~~~~~  103 (105)
T 1gv2_A           58 SWTEEEDRIIYQAHKRLG---------------------NRWAEIAKLLP----GRTDNAIKNHWNSTMRR  103 (105)
T ss_dssp             CCCHHHHHHHHHHHHHHS---------------------SCHHHHHTTCT----TCCHHHHHHHHHHHTC-
T ss_pred             CCCHHHHHHHHHHHHHhC---------------------CCHHHHHHHcC----CCCHHHHHHHHHHHHhc
Confidence            689999999999998764                     26999998773    38999999999988765

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=89.73  E-value=0.3  Score=40.84  Aligned_cols=44  Identities=20%  Similarity=0.475  Sum_probs=36.2

Q ss_pred             ccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhh
Q 013250          123 MKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFND  190 (447)
Q Consensus       123 mkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfnd  190 (447)
                      -.||..+-.+|+.+|...|.                    +.|..|+..|.    .+|+.||.+.|++
T Consensus        28 ~~Wt~eED~~L~~~v~~~g~--------------------~~W~~Ia~~l~----~Rt~~qcr~Rw~~   71 (128)
T 1h8a_C           28 GPWTKEEDQRVIEHVQKYGP--------------------KRWSDIAKHLK----GRIGKQCRERWHN   71 (128)
T ss_dssp             SCCCHHHHHHHHHHHHHTCS--------------------CCHHHHHHHSS----SCCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCC--------------------CCHHHHHHHhc----CCcHHHHHHHHHH
Confidence            36999999999999987642                    36999999985    4799999987765

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=87.95  E-value=0.21  Score=42.15  Aligned_cols=46  Identities=15%  Similarity=0.394  Sum_probs=38.2

Q ss_pred             cchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHHH
Q 013250          124 KWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKR  194 (447)
Q Consensus       124 kWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnkR  194 (447)
                      .||..+-.+|+.+|...|.                     +|..|++.|.    .+|+.||...|+.+.++
T Consensus        56 ~Wt~eEd~~L~~~~~~~G~---------------------~W~~Ia~~l~----gRt~~~~k~rw~~~l~~  101 (131)
T 3zqc_A           56 AWTPEEDETIFRNYLKLGS---------------------KWSVIAKLIP----GRTDNAIKNRWNSSISK  101 (131)
T ss_dssp             CCCHHHHHHHHHHHHHSCS---------------------CHHHHTTTST----TCCHHHHHHHHHHTTGG
T ss_pred             CCCHHHHHHHHHHHHHHCc---------------------CHHHHHHHcC----CCCHHHHHHHHHHHHHH
Confidence            4999999999999987651                     5999999875    48999999999876543

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=87.91  E-value=0.21  Score=41.83  Aligned_cols=46  Identities=20%  Similarity=0.526  Sum_probs=38.9

Q ss_pred             cchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHHH
Q 013250          124 KWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKR  194 (447)
Q Consensus       124 kWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnkR  194 (447)
                      .||..+-.+|+.++...|                     .+|..|++.|-    .+|+.||...|+.|.++
T Consensus        81 ~WT~eEd~~L~~~~~~~G---------------------~~W~~Ia~~l~----gRt~~~~k~r~~~~~~~  126 (128)
T 1h8a_C           81 SWTEEEDRIIYQAHKRLG---------------------NRWAEIAKLLP----GRTDNAVKNHWNSTMRR  126 (128)
T ss_dssp             CCCHHHHHHHHHHHHHHC---------------------SCHHHHGGGST----TCCHHHHHHHHHTTTTC
T ss_pred             cCCHHHHHHHHHHHHHHC---------------------cCHHHHHHHCC----CCCHHHHHHHHHHHHhc
Confidence            599999999999998764                     26999998874    38999999999988764

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=86.88  E-value=0.39  Score=40.54  Aligned_cols=43  Identities=21%  Similarity=0.471  Sum_probs=35.5

Q ss_pred             cchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhh
Q 013250          124 KWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFND  190 (447)
Q Consensus       124 kWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfnd  190 (447)
                      +||..+-.+|+.+|...|                    .+.|..|+..|.    .+|+.||.+.|.+
T Consensus         4 ~Wt~eED~~L~~~v~~~g--------------------~~~W~~Ia~~~~----~Rt~~qcr~Rw~~   46 (131)
T 3zqc_A            4 PFTEAEDDLIREYVKENG--------------------PQNWPRITSFLP----NRSPKQCRERWFN   46 (131)
T ss_dssp             SCCHHHHHHHHHHHHHHC--------------------SCCGGGGTTSCT----TSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhC--------------------cCCHHHHHHHHC----CCCHHHHHHHHhh
Confidence            699999999999998764                    246999999885    4799999987754

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=85.86  E-value=0.15  Score=41.14  Aligned_cols=47  Identities=17%  Similarity=0.458  Sum_probs=38.8

Q ss_pred             cchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHHHH
Q 013250          124 KWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRY  195 (447)
Q Consensus       124 kWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnkRY  195 (447)
                      .||..+-.+||.+|...|                    + +|..|++.|.    .+|+.||..-|+.+-+++
T Consensus        18 ~WT~eEd~~l~~~~~~~G--------------------~-~W~~IA~~l~----gRt~~q~k~r~~~~lrk~   64 (89)
T 2ltp_A           18 GWTEEEMGTAKKGLLEHG--------------------R-NWSAIARMVG----SKTVSQCKNFYFNYKKRQ   64 (89)
Confidence            589999999999887653                    1 4999999985    479999999999877664

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=85.11  E-value=0.96  Score=36.29  Aligned_cols=58  Identities=28%  Similarity=0.499  Sum_probs=43.6

Q ss_pred             cchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHHHHHHHHHhhc
Q 013250          124 KWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRYKKLNDILG  203 (447)
Q Consensus       124 kWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnkRYKRlnDiLG  203 (447)
                      .||..+.++|..|++.++++.                 -+-|..|+..+..    .|+.+|..+|+.|         .-|
T Consensus        10 ~WT~eE~k~fe~ALa~~~~~t-----------------p~rWe~IA~~V~g----KT~eE~~~hY~~l---------~~~   59 (73)
T 1wgx_A           10 EWNEKELQKLHCAFASLPKHK-----------------PGFWSEVAAAVGS----RSPEECQRKYMEN---------PRG   59 (73)
T ss_dssp             CCCHHHHHHHHHHHHHSCSSS-----------------SSHHHHHHHHTTT----SCHHHHHHHHHHS---------SSS
T ss_pred             CCCHHHHHHHHHHHHHCCCCC-----------------ccHHHHHHHHcCC----CCHHHHHHHHHHH---------Hhc
Confidence            499999999999999877651                 2469999999864    7999998655544         456


Q ss_pred             CCcceeee
Q 013250          204 KGLTCQVV  211 (447)
Q Consensus       204 RGtaC~VV  211 (447)
                      +|+.=.|+
T Consensus        60 ~~s~~~~~   67 (73)
T 1wgx_A           60 KGSQKHVT   67 (73)
T ss_dssp             SCCCCSSS
T ss_pred             cccccccc
Confidence            66654443

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=84.78  E-value=0.79  Score=39.58  Aligned_cols=44  Identities=20%  Similarity=0.469  Sum_probs=36.0

Q ss_pred             ccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhh
Q 013250          123 MKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFND  190 (447)
Q Consensus       123 mkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfnd  190 (447)
                      -.||..+-.+||.+|...|.                    ..|..|++.|.    .+|+.||...|++
T Consensus        59 ~~Wt~eEd~~L~~~v~~~g~--------------------~~W~~Ia~~l~----~Rt~~qcr~Rw~~  102 (159)
T 1h89_C           59 GPWTKEEDQRVIKLVQKYGP--------------------KRWSVIAKHLK----GRIGKQCRERWHN  102 (159)
T ss_dssp             SCCCHHHHHHHHHHHHHHCS--------------------CCHHHHHHTST----TCCHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHhCc--------------------ccHHHHHHHcC----CCCHHHHHHHHHH
Confidence            36999999999999987642                    35999999985    4799999987765

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=81.52  E-value=0.55  Score=40.56  Aligned_cols=47  Identities=19%  Similarity=0.503  Sum_probs=39.2

Q ss_pred             ccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHHH
Q 013250          123 MKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKR  194 (447)
Q Consensus       123 mkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnkR  194 (447)
                      -.||..+-.+|+.++..+|                     .+|..|++.|-    .+|+.||...|+.|.++
T Consensus       111 ~~WT~eEd~~L~~~~~~~g---------------------~~W~~Ia~~l~----gRt~~~~knr~~~~~r~  157 (159)
T 1h89_C          111 TSWTEEEDRIIYQAHKRLG---------------------NRWAEIAKLLP----GRTDNAIKNHWNSTMRR  157 (159)
T ss_dssp             SCCCHHHHHHHHHHHHHHC---------------------SCHHHHHTTST----TCCHHHHHHHHHTTTCC
T ss_pred             cCCChHHHHHHHHHHHHHC---------------------CCHHHHHHHCC----CCCHHHHHHHHHHHHhc
Confidence            4689999999999998764                     26999999874    38999999999987654

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=80.93  E-value=2  Score=33.84  Aligned_cols=51  Identities=18%  Similarity=0.259  Sum_probs=38.4

Q ss_pred             ccccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhccc-ccChhhhhhhhhhHHHH
Q 013250          121 HRMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGC-QVSPQQCEDKFNDLNKR  194 (447)
Q Consensus       121 ~RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~-~vSpqQCedKfndLnkR  194 (447)
                      .|-+||.-++..||..|..+|                    + +|+.|+....-  + .+|.-.=.|||.+|.|+
T Consensus         7 ~r~~WT~EE~~~L~~gV~k~G--------------------~-~W~~I~~~y~f--~~~RT~VdLKdk~r~L~k~   58 (62)
T 1x58_A            7 GRKDFTKEEVNYLFHGVKTMG--------------------N-HWNSILWSFPF--QKGRRAVDLAHKYHRLISG   58 (62)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHC--------------------S-CHHHHHHHSCC--CTTCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHh--------------------H-hHHHHHHhCCC--ccCcccchHHHHHHHHHhc
Confidence            466899999999999887663                    4 69999875432  2 56777778888888763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	447
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	97.2
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	97.06
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	96.87
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	96.76
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	96.21
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	95.96
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	95.95
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	95.36
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	93.86
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	92.5
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	82.15
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	80.93

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00019  Score=52.03  Aligned_cols=50  Identities=22%  Similarity=0.413  Sum_probs=40.5

Q ss_pred             cccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHH
Q 013250          122 RMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNK  193 (447)
Q Consensus       122 RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnk  193 (447)
                      |-+||..+..+|+.+|...|                    .|.|..|++.+.-.  .+||.||.++|++|+|
T Consensus         2 r~~WT~eEd~~L~~~V~~~G--------------------~~~W~~I~~~~~~~--~Rt~~q~k~Rwrn~~k   51 (55)
T d1w0ua_           2 KQKWTVEESEWVKAGVQKYG--------------------EGNWAAISKNYPFV--NRTAVMIKDRWRTMKR   51 (55)
T ss_dssp             CCCCCHHHHHHHHHHHHHHC--------------------TTCHHHHHHHSCCS--SCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhC--------------------CChHHHHHhhcCCC--CcCHHHHHHHHHHHhc
Confidence            56899999999999997653                    35699999874211  5899999999998876

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.00027  Score=50.74  Aligned_cols=50  Identities=18%  Similarity=0.280  Sum_probs=40.1

Q ss_pred             cccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHH
Q 013250          122 RMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNK  193 (447)
Q Consensus       122 RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnk  193 (447)
                      |=.||..+..+|+.+|...|                    -|.|..|++.+.  .-.+|+.||.++|++|+|
T Consensus         2 r~~WT~eED~~L~~~v~~~G--------------------~~~W~~I~~~~~--~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           2 RQAWLWEEDKNLRSGVRKYG--------------------EGNWSKILLHYK--FNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCHHHHHHHHHHHHHHC--------------------TTCHHHHHHHSC--CSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHC--------------------CCCHHHHHhhcC--CCCCCHHHHHHHHHHHHC
Confidence            45799999999999998764                    257999987542  125899999999999875

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=96.87  E-value=0.00081  Score=49.49  Aligned_cols=54  Identities=17%  Similarity=0.399  Sum_probs=45.1

Q ss_pred             cchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHHHHHHH
Q 013250          124 KWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRYKKL  198 (447)
Q Consensus       124 kWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnkRYKRl  198 (447)
                      +||..+-++|+.||..+|.+       +          +.+|..||..|-.    +|+.||...|+.|....|++
T Consensus         3 ~WT~eEd~~L~~~v~~~~~~-------~----------~~~W~~Ia~~l~g----Rt~~qc~~r~~~L~~dik~i   56 (63)
T d2cjja1           3 PWSAKENKAFERALAVYDKD-------T----------PDRWANVARAVEG----RTPEEVKKHYEILVEDIKYI   56 (63)
T ss_dssp             SCCHHHHHHHHHHHHHSCTT-------C----------TTHHHHHHHHSTT----CCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCC-------C----------chHHHHHHHHcCC----CCHHHHHHHHHHHHHHhhcc
Confidence            48999999999999888742       1          4579999999974    79999999999888777764

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.76  E-value=0.00085  Score=51.98  Aligned_cols=50  Identities=22%  Similarity=0.387  Sum_probs=43.2

Q ss_pred             cchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHH
Q 013250          124 KWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNK  193 (447)
Q Consensus       124 kWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnk  193 (447)
                      .||..+...|+.+|...|                    -|.|..|++.|...+-.+|+.||.++|++|.+
T Consensus         2 ~WT~eEd~~L~~~V~~~G--------------------~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~   51 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLG--------------------TGRWRDVKMRAFDNADHRTYVDLKDKWKTLVH   51 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHC--------------------SSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHC--------------------cccHHHHHHHHHhhccCCCHHHHHHHHHHHhh
Confidence            499999999999987654                    25799999999877888999999999999764

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.0028  Score=44.54  Aligned_cols=43  Identities=28%  Similarity=0.589  Sum_probs=35.8

Q ss_pred             cchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhh
Q 013250          124 KWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFND  190 (447)
Q Consensus       124 kWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfnd  190 (447)
                      .||..+..+|+.+|...|                    .+.|..||+.|..    +||.||...|++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G--------------------~~nW~~Ia~~~~~----Rt~~Qcr~r~~~   45 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCG--------------------FGNWQDVANQMCT----KTKEECEKHYMK   45 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTC--------------------TTCHHHHHHHHTT----SCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHC--------------------CccHHHHHHHcCC----CCHHHHHHHHHH
Confidence            399999999999996432                    4579999999974    599999988865

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.96  E-value=0.0037  Score=44.12  Aligned_cols=45  Identities=20%  Similarity=0.488  Sum_probs=37.9

Q ss_pred             cccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhh
Q 013250          122 RMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFND  190 (447)
Q Consensus       122 RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfnd  190 (447)
                      |.+||..+-.+|+.+|...|                    .+.|..|++.|.    .+||.||...|++
T Consensus         1 k~~WT~eED~~L~~~v~~~g--------------------~~~W~~Ia~~~~----~Rt~~qcr~Rw~~   45 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNG--------------------TDDWKVIANYLP----NRTDVQCQHRWQK   45 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHC--------------------SSCHHHHHHTST----TCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHC--------------------CCCHHHHHHHHC----CCCHHHHHHHHHh
Confidence            46899999999999997753                    246999999985    3899999998876

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.95  E-value=0.0027  Score=45.47  Aligned_cols=45  Identities=22%  Similarity=0.495  Sum_probs=38.0

Q ss_pred             cccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhh
Q 013250          122 RMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFND  190 (447)
Q Consensus       122 RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfnd  190 (447)
                      |-.||..+-..|+.+|...|.                    +.|..||+.|.    .+||.||.+.|++
T Consensus         3 rg~WT~eED~~L~~~v~~~g~--------------------~~W~~Ia~~l~----~Rt~~qc~~Rw~~   47 (52)
T d1gvda_           3 KGPWTKEEDQRLIKLVQKYGP--------------------KRWSVIAKHLK----GRIGKQCRERWHN   47 (52)
T ss_dssp             CCSCCHHHHHHHHHHHHHHCT--------------------TCHHHHHTTST----TCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCC--------------------CCHHHHHHHHC----CCCHHHHHHHHHh
Confidence            457999999999999987652                    46999999985    5799999999886

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.36  E-value=0.012  Score=42.72  Aligned_cols=46  Identities=22%  Similarity=0.346  Sum_probs=37.3

Q ss_pred             ccccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhH
Q 013250          121 HRMKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDL  191 (447)
Q Consensus       121 ~RmkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndL  191 (447)
                      +.|+||..+-.+|+.+|.-.|                     ..|..|++.|.    .+|+.||..-|+.+
T Consensus         1 ~~~~WT~eEd~~l~~~~~~~G---------------------~~W~~Ia~~~~----~Rt~~q~k~ry~~~   46 (65)
T d2cu7a1           1 YSVKWTIEEKELFEQGLAKFG---------------------RRWTKISKLIG----SRTVLQVKSYARQY   46 (65)
T ss_dssp             CCCCCCHHHHHHHHHHHHHTC---------------------SCHHHHHHHHS----SSCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhc---------------------chHHHHHHHcC----CCCHHHHHHHHHHH
Confidence            468999999999999987552                     25999999885    37999999887643

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.86  E-value=0.015  Score=42.47  Aligned_cols=47  Identities=21%  Similarity=0.436  Sum_probs=39.6

Q ss_pred             cchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhHHHHH
Q 013250          124 KWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRY  195 (447)
Q Consensus       124 kWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndLnkRY  195 (447)
                      +||..+..+|+.+++..|.                     .|..||..|.    ..|+.||...|+.+.+++
T Consensus         7 ~WT~eE~~~f~~~~~~~G~---------------------~w~~Ia~~~~----~kt~~q~~~~y~~~~k~~   53 (65)
T d2iw5b1           7 RWTTEEQLLAVQAIRKYGR---------------------DFQAISDVIG----NKSVVQVKNFFVNYRRRF   53 (65)
T ss_dssp             SCCHHHHHHHHHHHHHHSS---------------------CHHHHHHHHS----SCCHHHHHHHHHHTTTTT
T ss_pred             CCCHHHHHHHHHHHHHhCc---------------------hHHHHHHHcC----CCCHHHHHHHHHHHHhhc
Confidence            6999999999999987753                     3999999986    389999999998876654

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.50  E-value=0.037  Score=39.82  Aligned_cols=48  Identities=21%  Similarity=0.408  Sum_probs=37.3

Q ss_pred             ccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhH
Q 013250          123 MKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDL  191 (447)
Q Consensus       123 mkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndL  191 (447)
                      -.||..+-.+|+.||...|.+.                 ...|..|+..|.    .+|+.||-..|.-|
T Consensus        13 ~~WT~eEd~~L~~~v~~~~~~~-----------------~~~W~~IA~~l~----~Rt~~qc~~R~~~L   60 (60)
T d2cqra1          13 EPWTQNQQKLLELALQQYPRGS-----------------SDCWDKIARCVP----SKSKEDCIARYKLL   60 (60)
T ss_dssp             CCCCHHHHHHHHHHHHHSCSSS-----------------HHHHHHHGGGCS----SSCHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHcCCcc-----------------chHHHHHHHHcC----CCCHHHHHHHHHHC
Confidence            3699999999999998876421                 125999999885    48999998766543

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.15  E-value=0.97  Score=33.11  Aligned_cols=44  Identities=18%  Similarity=0.422  Sum_probs=33.8

Q ss_pred             cchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhh
Q 013250          124 KWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFN  189 (447)
Q Consensus       124 kWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfn  189 (447)
                      +||..+.++|..|+..+..+       +          ...|+.|+..+   |  .|+.+|-.+++
T Consensus         3 eWT~ee~~~le~Al~~~P~g-------t----------~~RW~~IA~~v---g--kt~~ev~~~~k   46 (59)
T d2cqqa1           3 EWTEEDLSQLTRSMVKFPGG-------T----------PGRWEKIAHEL---G--RSVTDVTTKAK   46 (59)
T ss_dssp             CCCHHHHHHHHHHHHHSCTT-------C----------TTHHHHHHHHH---T--SCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCC-------C----------cHHHHHHHHHH---C--CCHHHHHHHHH
Confidence            69999999999999876542       2          24699999999   3  68888765443

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.93  E-value=0.72  Score=31.82  Aligned_cols=44  Identities=18%  Similarity=0.498  Sum_probs=36.4

Q ss_pred             ccchhHHHHHHHHHHHhhcCCCCccCcccccccchhhhhccchhHHHHHHhhcccccChhhhhhhhhhH
Q 013250          123 MKWTDNVVRLLIAAVACVGDDGTIDGVEGLKRKSGILQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDL  191 (447)
Q Consensus       123 mkWtd~mvkllI~~v~~~g~d~~~d~~~~~kr~~~~lQKKgkWk~vs~~M~ekG~~vSpqQCedKfndL  191 (447)
                      -.||..+-.+|+..|...|                     .+|..|++.|.    .+|+.||..-|+.+
T Consensus         2 ~~WT~eED~~L~~~v~~~G---------------------~~W~~Ia~~~~----gRt~~~~knr~~~~   45 (47)
T d1gv2a2           2 TSWTEEEDRIIYQAHKRLG---------------------NRWAEIAKLLP----GRTDNAIKNHWNST   45 (47)
T ss_dssp             CCCCHHHHHHHHHHHHHHS---------------------SCHHHHHTTCT----TCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHh---------------------hHHHHHHhHcC----CCCHHHHHHHHHHH
Confidence            3699999999999988754                     26999999875    58999999888865