Citrus Sinensis ID: 013271

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440------
MALSTANSFSPSLSSKHASKQPELYTWFRSPNAIALKSPPLAPASIELKRNGGFVLGQYKVNCRIYASSAAPMMDQTVSKAPTIVEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFCKS
cEEEcccccccccccccccccccEEEEEEccccccccccccccccHHHHccccccccccEEEccccccccccccccccccccEEEEEccccccccEEEcccccccHHHHHHcccccEEEEEEccccHHHHHHHHHHHHHccccccEEEEEEcccccccccHHHHHHHHHHHHHcccccccEEEEEcccccccHHHHHHHHHHcccccEEcccHHHHHHHcccccccccccccccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHcHHHHHcccHHHHHHHHHHHHHHHHHccccccccccccHHccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHccccccccEEEEEEEccccccEEEcccccHHHHHHHHHHHHHc
cccHHcccccccccccccccccccccccccccccccccccccccEccccccccEEccHccccEEEEEcccccccccccccccEEEEEEcccccccEEEcccHcccHHHHHHHccccEEEEEEccccHHHHHHHHHHHHHHcccccEEEEEEEccccccccHHHHHHHHHHHHHcccccccEEEEEEcHHHHHHHHHHHHHHHHccEEEEEEccHHHHHccccccEEEEEEccEEEEEEEEccccEEEEEHHHHHHccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccEEEEEEccccccEEEcccccHHHHHHHHHHHHcc
malstansfspslsskhaskqpelytwfrspnaialkspplapasielkrnggfvlgqYKVNCRIyassaapmmdqtvskaptivevdlgqrsypiyigsglldhpdllqkhvqgkkVLVVTNNTVAPLYLDKVtdaltrgnpnvsvenvilpdgenyknMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLrgvsfiqipTTVMAQvdssvggktginhrLGKNligafyqpqcvlvdtdtlntlpdrELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENkaevvsldekesgLRATLNLghtfghaietgfgygqwlhgEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILqqaklptappdtmTVEMFKSIMAVDKKVADGLLRLILLkgplgncvftgdydrkalDDTLYAFCKS
malstansfspslsskhaskqPELYTWFRSPNAIALKSPPLAPASIELKRNGGFVLGQYKVNCRIYASSAAPMMDQTVSKAPTIVEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKvtdaltrgnpnvsvenvilpdgenyknMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILqqaklptappdtMTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFCKS
MALSTANSFSPSLSSKHASKQPELYTWFRSPNAIALKSPPLAPASIELKRNGGFVLGQYKVNCRIYASSAAPMMDQTVSKAPTIVEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGFGYGQWLHGEavaagmvmavdmSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSIMAVDKKVADgllrlillkgplgNCVFTGDYDRKALDDTLYAFCKS
***********************LYTWFRSPNAIALKSPPLAPASIELKRNGGFVLGQYKVNCRIYASSAAPMMDQTVSKAPTIVEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFC**
MALSTANSFSPSLS*********LYTWFRSPNAIALKSPPLA***********FVLGQYKV************************EVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFCKS
********************QPELYTWFRSPNAIALKSPPLAPASIELKRNGGFVLGQYKVNCRIYASSAAPMMDQTVSKAPTIVEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFCKS
*****************************SPNAIALKSPPLAPASIELKRNGGFVLGQYKVNCRIYASSA*********KAPTIVEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFCKS
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MALSTANSFSPSLSSKHASKQPELYTWFRSPNAIALKSPPLAPASIELKRNGGFVLGQYKVNCRIYASSAAPMMDQTVSKAPTIVEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFCKS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query446 2.2.26 [Sep-21-2011]
B8GPV3361 3-dehydroquinate synthase yes no 0.782 0.966 0.627 1e-129
Q31DP9358 3-dehydroquinate synthase yes no 0.789 0.983 0.613 1e-126
B1J2J5365 3-dehydroquinate synthase yes no 0.791 0.967 0.622 1e-124
Q88CV2365 3-dehydroquinate synthase yes no 0.791 0.967 0.620 1e-123
Q1IGA7365 3-dehydroquinate synthase yes no 0.791 0.967 0.617 1e-123
A4XPQ2367 3-dehydroquinate synthase yes no 0.786 0.956 0.629 1e-123
A5WAB1365 3-dehydroquinate synthase yes no 0.791 0.967 0.617 1e-122
Q60BY2359 3-dehydroquinate synthase yes no 0.798 0.991 0.595 1e-121
C3KAI3366 3-dehydroquinate synthase yes no 0.791 0.964 0.606 1e-119
Q87V15367 3-dehydroquinate synthase yes no 0.791 0.961 0.594 1e-119
>sp|B8GPV3|AROB_THISH 3-dehydroquinate synthase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=aroB PE=3 SV=1 Back     alignment and function desciption
 Score =  461 bits (1186), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 222/354 (62%), Positives = 271/354 (76%), Gaps = 5/354 (1%)

Query: 87  VDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVS 146
           V+LG RSYPI+IG GLLD P      ++GK+V++VTN TVAPLYLD+    L R   +  
Sbjct: 6   VELGDRSYPIHIGRGLLDDPTRFAPRIRGKRVMIVTNETVAPLYLDR----LKRTLGDFR 61

Query: 147 VENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVS 206
           VE VILPDGE YK M+TL +V+   +E+R DR+ T VALGGGVIGD+ G+AAASY RGV 
Sbjct: 62  VEAVILPDGEEYKTMETLNQVYTALLEARFDRKATLVALGGGVIGDITGFAAASYQRGVD 121

Query: 207 FIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLA 266
           FIQ+PTT+++QVDSSVGGKTG+NH LGKN+IGAF+QP+CV++DTDTL+TLPDREL +G+A
Sbjct: 122 FIQVPTTLLSQVDSSVGGKTGVNHPLGKNMIGAFHQPRCVVIDTDTLDTLPDRELRAGIA 181

Query: 267 EVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATL 326
           EVIKYGLI D  FF+W E NM +L+ARDP A AYAI RSC +KA+VV+ DE+E G RA L
Sbjct: 182 EVIKYGLICDRPFFDWLEANMDRLLARDPEALAYAIHRSCHDKAQVVAEDEREGGRRAIL 241

Query: 327 NLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLP 386
           NLGHTFGHAIETG GYG WLHGE VA GMVMA  MS RLGW+D   + R   ++ +A LP
Sbjct: 242 NLGHTFGHAIETGMGYGVWLHGEGVATGMVMAARMSRRLGWLDAEDLHRTEALIARAGLP 301

Query: 387 TAPPDTMTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTL 440
             PP  +T E F  +M+VDKKV DG LRL+LL+G +G  V T D+D  ALD TL
Sbjct: 302 VEPPPEITAERFAELMSVDKKVLDGQLRLVLLRG-IGEAVVTADFDPAALDATL 354

Thioalkalivibrio sp. (strain HL-EbGR7) (taxid: 396588)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 4
>sp|Q31DP9|AROB_THICR 3-dehydroquinate synthase OS=Thiomicrospira crunogena (strain XCL-2) GN=aroB PE=3 SV=1 Back     alignment and function description
>sp|B1J2J5|AROB_PSEPW 3-dehydroquinate synthase OS=Pseudomonas putida (strain W619) GN=aroB PE=3 SV=1 Back     alignment and function description
>sp|Q88CV2|AROB_PSEPK 3-dehydroquinate synthase OS=Pseudomonas putida (strain KT2440) GN=aroB PE=3 SV=1 Back     alignment and function description
>sp|Q1IGA7|AROB_PSEE4 3-dehydroquinate synthase OS=Pseudomonas entomophila (strain L48) GN=aroB PE=3 SV=1 Back     alignment and function description
>sp|A4XPQ2|AROB_PSEMY 3-dehydroquinate synthase OS=Pseudomonas mendocina (strain ymp) GN=aroB PE=3 SV=1 Back     alignment and function description
>sp|A5WAB1|AROB_PSEP1 3-dehydroquinate synthase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=aroB PE=3 SV=1 Back     alignment and function description
>sp|Q60BY2|AROB_METCA 3-dehydroquinate synthase OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) GN=aroB PE=3 SV=1 Back     alignment and function description
>sp|C3KAI3|AROB_PSEFS 3-dehydroquinate synthase OS=Pseudomonas fluorescens (strain SBW25) GN=aroB PE=3 SV=1 Back     alignment and function description
>sp|Q87V15|AROB_PSESM 3-dehydroquinate synthase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=aroB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query446
76782192459 putative 3-dehydroquinate synthase [Fagu 0.977 0.949 0.794 0.0
222136863456 3-dehydroquinate synthase [Vitis vinifer 0.968 0.947 0.799 0.0
225431071456 PREDICTED: 3-dehydroquinate synthase [Vi 0.961 0.940 0.802 0.0
147858670456 hypothetical protein VITISV_039705 [Viti 0.961 0.940 0.802 0.0
224134046443 3-dehydroquinate synthase [Populus trich 0.970 0.977 0.791 0.0
118485624443 unknown [Populus trichocarpa] 0.970 0.977 0.791 0.0
449456829452 PREDICTED: 3-dehydroquinate synthase-lik 0.896 0.884 0.846 0.0
356538307437 PREDICTED: 3-dehydroquinate synthase-lik 0.964 0.983 0.779 0.0
224134050375 3-dehydroquinate synthase [Populus trich 0.818 0.973 0.915 0.0
346229111437 3-dehydroquinate synthase [Glycine max] 0.964 0.983 0.772 0.0
>gi|76782192|gb|ABA54866.1| putative 3-dehydroquinate synthase [Fagus sylvatica] Back     alignment and taxonomy information
 Score =  734 bits (1895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/462 (79%), Positives = 398/462 (86%), Gaps = 26/462 (5%)

Query: 4   STANSFSPSLSSK-----------HASKQPELYTWFR---SPNAIALKSPPLAPASIELK 49
           STAN FS SLSSK           H+S      ++ R    PN+++L+S  ++P+SIEL 
Sbjct: 3   STANPFSISLSSKPTATSSLRKINHSSD-----SFLRVQNPPNSVSLRSSFISPSSIELN 57

Query: 50  RN--GGFVLGQYKVNCRIYASSAAPMMDQTVSK----APTIVEVDLGQRSYPIYIGSGLL 103
            N  G  +    +V  RI ASSA  +MDQ+V+K    APTIV+V+LG RSYPIYIG GLL
Sbjct: 58  LNRVGNSISSASRVKSRICASSAQ-VMDQSVTKSDPTAPTIVDVNLGNRSYPIYIGPGLL 116

Query: 104 DHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDT 163
           D P LLQKHV GK+VLVVTN+ V PLYLDKV +ALT+GNPNVSVE+VILPDGE YK+MDT
Sbjct: 117 DQPHLLQKHVHGKRVLVVTNDKVGPLYLDKVVEALTKGNPNVSVESVILPDGEKYKDMDT 176

Query: 164 LMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVG 223
           LMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRG++FIQIPTTVMAQVDSSVG
Sbjct: 177 LMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGINFIQIPTTVMAQVDSSVG 236

Query: 224 GKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQ 283
           GKTGINH LGKNLIGAFYQPQCVL+DTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQ
Sbjct: 237 GKTGINHHLGKNLIGAFYQPQCVLIDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQ 296

Query: 284 EQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGFGYG 343
           E+N+  LMARDP A AYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGFGYG
Sbjct: 297 EKNIQALMARDPNALAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGFGYG 356

Query: 344 QWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSIMA 403
           QWLHGEAVA GMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPT PP+ MTVEMFKS+MA
Sbjct: 357 QWLHGEAVAVGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTFPPEIMTVEMFKSVMA 416

Query: 404 VDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFCK 445
           VDKKVADGLLRLILLKGPLGNCVFTGDYDRKALD+TL AF K
Sbjct: 417 VDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDETLRAFVK 458

Source: Fagus sylvatica

Species: Fagus sylvatica

Genus: Fagus

Family: Fagaceae

Order: Fagales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|222136863|gb|ACM45081.1| 3-dehydroquinate synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|225431071|ref|XP_002263236.1| PREDICTED: 3-dehydroquinate synthase [Vitis vinifera] gi|297734973|emb|CBI17335.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147858670|emb|CAN82907.1| hypothetical protein VITISV_039705 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224134046|ref|XP_002327742.1| 3-dehydroquinate synthase [Populus trichocarpa] gi|222836827|gb|EEE75220.1| 3-dehydroquinate synthase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118485624|gb|ABK94662.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449456829|ref|XP_004146151.1| PREDICTED: 3-dehydroquinate synthase-like [Cucumis sativus] gi|449495064|ref|XP_004159724.1| PREDICTED: 3-dehydroquinate synthase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356538307|ref|XP_003537645.1| PREDICTED: 3-dehydroquinate synthase-like [Glycine max] Back     alignment and taxonomy information
>gi|224134050|ref|XP_002327743.1| 3-dehydroquinate synthase [Populus trichocarpa] gi|222836828|gb|EEE75221.1| 3-dehydroquinate synthase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|346229111|gb|AEO21429.1| 3-dehydroquinate synthase [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query446
TAIR|locus:2156942442 AT5G66120 [Arabidopsis thalian 0.968 0.977 0.717 8.4e-161
TIGR_CMR|SO_0287359 SO_0287 "3-dehydroquinate synt 0.719 0.894 0.533 4.6e-89
UNIPROTKB|P07639362 aroB [Escherichia coli K-12 (t 0.721 0.889 0.546 8.6e-88
UNIPROTKB|Q9KNV2361 aroB "3-dehydroquinate synthas 0.717 0.886 0.535 8e-85
TIGR_CMR|VC_2628361 VC_2628 "3-dehydroquinate synt 0.717 0.886 0.535 8e-85
TIGR_CMR|CPS_0473354 CPS_0473 "3-dehydroquinate syn 0.717 0.903 0.487 1.4e-80
TIGR_CMR|GSU_2025362 GSU_2025 "3-dehydroquinate syn 0.724 0.892 0.486 2.4e-76
TIGR_CMR|CBU_1893360 CBU_1893 "3-dehydroquinate syn 0.721 0.894 0.464 5.7e-75
TIGR_CMR|SPO_1635370 SPO_1635 "3-dehydroquinate syn 0.798 0.962 0.427 1.1e-62
TIGR_CMR|CHY_0629529 CHY_0629 "shikimate kinase/3-d 0.701 0.591 0.430 1.9e-60
TAIR|locus:2156942 AT5G66120 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1566 (556.3 bits), Expect = 8.4e-161, P = 8.4e-161
 Identities = 315/439 (71%), Positives = 347/439 (79%)

Query:    12 SLSSKHASKQPELYTW--FRSPNAI--ALKSPPLAPASIELKRNGGFVLGQYKVNCRIYA 67
             SLS+  ASK    +    F +P  I   + S    P  + L       L + +V      
Sbjct:     7 SLSNVAASKNLNSFQSRAFIAPPTIFFPVASAKSKPGELSLSST---TLSRSRVRAGASQ 63

Query:    68 SSAAPMMDQTVSKAPTIVEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVA 127
                 P+ DQ    +PT+VEVDLG RSYPIYIG+GLLDH +LLQ+HV GK+VLVVTN+ VA
Sbjct:    64 LMNEPLNDQRSISSPTVVEVDLGDRSYPIYIGAGLLDHSELLQRHVHGKRVLVVTNDRVA 123

Query:   128 PLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGG 187
             PLYLDK  DALTRGNPNV+VE+VILPDGE YK+MDTLMKVFDKAIESRLDRRCTFVALGG
Sbjct:   124 PLYLDKTIDALTRGNPNVTVESVILPDGEKYKDMDTLMKVFDKAIESRLDRRCTFVALGG 183

Query:   188 GVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVL 247
             GVIGDMCGYAAASYLRGV+FIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVL
Sbjct:   184 GVIGDMCGYAAASYLRGVNFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVL 243

Query:   248 VDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCE 307
             VDTDTLNTLPDRE+ASGLAEVIKYGLIRDAEFFEWQE+N+  L+ARDP A A+AIKRSCE
Sbjct:   244 VDTDTLNTLPDREMASGLAEVIKYGLIRDAEFFEWQEKNIEALLARDPAALAFAIKRSCE 303

Query:   308 NKAEVVSLDEKESGLRATLNLGHTFGHAIETGFGYGQWLHGEXXXXXXXXXXXXSYRLGW 367
             NKA+VVS DEKESGLRATLNLGHTFGHAIETGFGYG+WLHGE            SYRLGW
Sbjct:   304 NKADVVSQDEKESGLRATLNLGHTFGHAIETGFGYGEWLHGEAVAAGTVMAVDMSYRLGW 363

Query:   368 IDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSIMAVDKKVADXXXXXXXXXXXXXNCVF 427
             ID+SIVKRV+ IL +AKLPT PP++MTV MFKSIMAVDKKVAD             NCVF
Sbjct:   364 IDESIVKRVNKILVRAKLPTTPPESMTVSMFKSIMAVDKKVADGLLRLILLKGPLGNCVF 423

Query:   428 TGDYDRKALDDTLYAFCKS 446
             TGDYDR+ALD TL AF KS
Sbjct:   424 TGDYDREALDATLRAFSKS 442
GO:0003856 "3-dehydroquinate synthase activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0006744 "ubiquinone biosynthetic process" evidence=RCA
GO:0005768 "endosome" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
TIGR_CMR|SO_0287 SO_0287 "3-dehydroquinate synthase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|P07639 aroB [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KNV2 aroB "3-dehydroquinate synthase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2628 VC_2628 "3-dehydroquinate synthase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_0473 CPS_0473 "3-dehydroquinate synthase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2025 GSU_2025 "3-dehydroquinate synthase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1893 CBU_1893 "3-dehydroquinate synthase" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_1635 SPO_1635 "3-dehydroquinate synthase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0629 CHY_0629 "shikimate kinase/3-dehydroquinate synthase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q31DP9AROB_THICR4, ., 2, ., 3, ., 40.61340.78920.9832yesno
Q62GB0AROB_BURMA4, ., 2, ., 3, ., 40.57310.74430.9247yesno
A3P066AROB_BURP04, ., 2, ., 3, ., 40.57310.74430.9247yesno
B1YRS4AROB_BURA44, ., 2, ., 3, ., 40.55860.78250.9721yesno
A1SB13AROB_SHEAM4, ., 2, ., 3, ., 40.58110.74880.9303yesno
Q1IGA7AROB_PSEE44, ., 2, ., 3, ., 40.61730.79140.9671yesno
A4XPQ2AROB_PSEMY4, ., 2, ., 3, ., 40.62920.78690.9564yesno
A3MPY1AROB_BURM74, ., 2, ., 3, ., 40.57310.74430.9247yesno
Q21H84AROB_SACD24, ., 2, ., 3, ., 40.58140.78920.9723yesno
Q4KJI8AROB_PSEF54, ., 2, ., 3, ., 40.60890.79140.9644yesno
Q60BY2AROB_METCA4, ., 2, ., 3, ., 40.59550.79820.9916yesno
P34002AROB_PSEAE4, ., 2, ., 3, ., 40.59830.78690.9538yesno
Q0AJ12AROB_NITEC4, ., 2, ., 3, ., 40.60110.74880.9051yesno
B4E603AROB_BURCJ4, ., 2, ., 3, ., 40.55580.78250.9721yesno
Q39KC4AROB_BURS34, ., 2, ., 3, ., 40.55860.78250.9721yesno
Q0BJ01AROB_BURCM4, ., 2, ., 3, ., 40.55860.78250.9721yesno
A3NED2AROB_BURP64, ., 2, ., 3, ., 40.57310.74430.9247yesno
C1DHQ5AROB_AZOVD4, ., 2, ., 3, ., 40.58420.78690.9564yesno
Q5P5P3AROB_AROAE4, ., 2, ., 3, ., 40.54570.79590.9861yesno
Q82TB9AROB_NITEU4, ., 2, ., 3, ., 40.60970.72860.8807yesno
Q02EX9AROB_PSEAB4, ., 2, ., 3, ., 40.59830.78690.9538yesno
A1V8D7AROB_BURMS4, ., 2, ., 3, ., 40.57310.74430.9247yesno
Q3JEG3AROB_NITOC4, ., 2, ., 3, ., 40.59830.78690.9777yesno
C3KAI3AROB_PSEFS4, ., 2, ., 3, ., 40.60610.79140.9644yesno
Q3JMW1AROB_BURP14, ., 2, ., 3, ., 40.57310.74430.9247yesno
C5BRJ7AROB_TERTT4, ., 2, ., 3, ., 40.56940.79820.9861yesno
A2S718AROB_BURM94, ., 2, ., 3, ., 40.57310.74430.9247yesno
B1JU67AROB_BURCC4, ., 2, ., 3, ., 40.55020.78250.9721yesno
Q1LI88AROB_RALME4, ., 2, ., 3, ., 40.56100.76230.9239yesno
A6W2T3AROB_MARMS4, ., 2, ., 3, ., 40.55080.78470.9510yesno
Q0K669AROB_CUPNH4, ., 2, ., 3, ., 40.57260.76230.9239yesno
Q48PH0AROB_PSE144, ., 2, ., 3, ., 40.59490.79140.9618yesno
Q4ZZE3AROB_PSEU24, ., 2, ., 3, ., 40.59210.79140.9618yesno
B1J2J5AROB_PSEPW4, ., 2, ., 3, ., 40.62290.79140.9671yesno
Q46WJ4AROB_CUPPJ4, ., 2, ., 3, ., 40.55240.77800.9429yesno
B8GPV3AROB_THISH4, ., 2, ., 3, ., 40.62710.78250.9667yesno
Q88CV2AROB_PSEPK4, ., 2, ., 3, ., 40.62010.79140.9671yesno
Q3SLY4AROB_THIDA4, ., 2, ., 3, ., 40.59940.75780.9415yesno
A0K3S0AROB_BURCH4, ., 2, ., 3, ., 40.55300.78250.9721yesno
A4JAT5AROB_BURVG4, ., 2, ., 3, ., 40.57310.74430.9247yesno
Q1BRZ3AROB_BURCA4, ., 2, ., 3, ., 40.55300.78250.9721yesno
B7V3D1AROB_PSEA84, ., 2, ., 3, ., 40.59550.78690.9538yesno
B3R7B8AROB_CUPTR4, ., 2, ., 3, ., 40.56940.77800.9429yesno
A8GZ30AROB_SHEPA4, ., 2, ., 3, ., 40.55050.78920.9805yesno
A6VDF9AROB_PSEA74, ., 2, ., 3, ., 40.59830.78690.9538yesno
A4VH14AROB_PSEU54, ., 2, ., 3, ., 40.59490.79140.9618yesno
Q3KJA1AROB_PSEPF4, ., 2, ., 3, ., 40.60610.79140.9644yesno
Q87V15AROB_PSESM4, ., 2, ., 3, ., 40.59490.79140.9618yesno
A5WAB1AROB_PSEP14, ., 2, ., 3, ., 40.61730.79140.9671yesno
Q63Q57AROB_BURPS4, ., 2, ., 3, ., 40.57310.74430.9247yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.3.40.914
3rd Layer4.2.30.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00036740001
SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (456 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00019835001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (495 aa)
•••  •• 0.992
GSVIVG00008900001
SubName- Full=Chromosome chr14 scaffold_211, whole genome shotgun sequence; (502 aa)
•••  •• 0.989
GSVIVG00026409001
RecName- Full=3-phosphoshikimate 1-carboxyvinyltransferase; EC=2.5.1.19; (521 aa)
•• • •• 0.981
GSVIVG00019395001
SubName- Full=Putative uncharacterized protein (Chromosome chr7 scaffold_20, whole genome shotg [...] (301 aa)
••••  • 0.980
GSVIVG00002084001
SubName- Full=Chromosome chr19 scaffold_126, whole genome shotgun sequence; (290 aa)
•    •• 0.977
GSVIVG00008899001
SubName- Full=Chromosome chr14 scaffold_211, whole genome shotgun sequence; (519 aa)
•••  •• 0.976
GSVIVG00018199001
RecName- Full=Chorismate synthase; EC=4.2.3.5; (348 aa)
• ••  • 0.976
GSVIVG00024523001
RecName- Full=Chorismate synthase; EC=4.2.3.5; (403 aa)
• ••  • 0.976
GSVIVG00005432001
SubName- Full=Chromosome undetermined scaffold_151, whole genome shotgun sequence; (278 aa)
••••  • 0.971
GSVIVG00015196001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (548 aa)
   • •• 0.945

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query446
PLN02834433 PLN02834, PLN02834, 3-dehydroquinate synthase 0.0
PRK00002358 PRK00002, aroB, 3-dehydroquinate synthase; Reviewe 0.0
cd08195345 cd08195, DHQS, Dehydroquinate synthase (DHQS) cata 0.0
COG0337360 COG0337, AroB, 3-dehydroquinate synthetase [Amino 1e-177
pfam01761259 pfam01761, DHQ_synthase, 3-dehydroquinate synthase 1e-152
TIGR01357344 TIGR01357, aroB, 3-dehydroquinate synthase 1e-142
cd08169344 cd08169, DHQ-like, Dehydroquinate synthase-like wh 7e-94
cd08197355 cd08197, DOIS, 2-deoxy-scyllo-inosose synthase (DO 1e-78
cd08198369 cd08198, DHQS-like2, Dehydroquinate synthase (DHQS 1e-63
PRK14021542 PRK14021, PRK14021, bifunctional shikimate kinase/ 3e-61
PRK06203389 PRK06203, aroB, 3-dehydroquinate synthase; Reviewe 5e-61
cd08196346 cd08196, DHQS-like1, Dehydroquinate synthase (DHQS 2e-56
cd08199354 cd08199, EEVS, 2-epi-5-epi-valiolone synthase (EEV 7e-56
PRK13951488 PRK13951, PRK13951, bifunctional shikimate kinase/ 6e-43
cd07766332 cd07766, DHQ_Fe-ADH, Dehydroquinate synthase-like 2e-27
pfam13685247 pfam13685, Fe-ADH_2, Iron-containing alcohol dehyd 3e-18
cd08175348 cd08175, G1PDH, Glycerol-1-phosphate dehydrogenase 1e-16
COG0371360 COG0371, GldA, Glycerol dehydrogenase and related 2e-16
cd08173339 cd08173, Gro1PDH, Sn-glycerol-1-phosphate dehydrog 5e-15
PRK00843350 PRK00843, egsA, NAD(P)-dependent glycerol-1-phosph 3e-12
cd08174331 cd08174, G1PDH-like, Glycerol-1-phosphate dehydrog 4e-08
pfam00465323 pfam00465, Fe-ADH, Iron-containing alcohol dehydro 2e-07
cd08549332 cd08549, G1PDH_related, Glycerol-1-phosphate_dehyd 4e-07
COG1454377 COG1454, EutG, Alcohol dehydrogenase, class IV [En 6e-07
cd08172347 cd08172, GlyDH-like1, Glycerol dehydrogenases-like 1e-04
cd08550349 cd08550, GlyDH-like, Glycerol_dehydrogenase-like 0.001
cd08180332 cd08180, PDD, 1,3-propanediol dehydrogenase (PPD) 0.002
>gnl|CDD|215448 PLN02834, PLN02834, 3-dehydroquinate synthase Back     alignment and domain information 
 Score =  759 bits (1961), Expect = 0.0
 Identities = 309/446 (69%), Positives = 360/446 (80%), Gaps = 15/446 (3%)

Query: 1   MALSTANSFSPSLSSKHASKQPELYTWFRSPNAIALKSPPLAPASIELKRNGGFVLGQYK 60
              S+A++   +  +  +   P    + ++ +  + K   L     E             
Sbjct: 1   KKSSSADNSESNTPTVLSRS-PSDAFFDQNSSIESSKEGDLTEVIHEK------------ 47

Query: 61  VNCRIYASSAAPMMDQTVSKAPTIVEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLV 120
             C +  ++ + +     +   T+V+VDLG RSYPIYIGSGLLDH +LLQ+HV GK+VLV
Sbjct: 48  --CPVSGANKSEVTKTASATVTTVVKVDLGDRSYPIYIGSGLLDHGELLQRHVHGKRVLV 105

Query: 121 VTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRC 180
           VTN TVAPLYL+KV +ALT   P ++VE+VILPDGE YK+M+TLMKVFDKA+ESRLDRRC
Sbjct: 106 VTNETVAPLYLEKVVEALTAKGPELTVESVILPDGEKYKDMETLMKVFDKALESRLDRRC 165

Query: 181 TFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAF 240
           TFVALGGGVIGDMCG+AAASY RGV+F+QIPTTVMAQVDSSVGGKTG+NH LGKN+IGAF
Sbjct: 166 TFVALGGGVIGDMCGFAAASYQRGVNFVQIPTTVMAQVDSSVGGKTGVNHPLGKNMIGAF 225

Query: 241 YQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAY 300
           YQPQCVL+DTDTL TLPDRELASG+AEV+KYGLIRDAEFFEWQE NM KL+ARDP A AY
Sbjct: 226 YQPQCVLIDTDTLATLPDRELASGIAEVVKYGLIRDAEFFEWQEANMEKLLARDPGALAY 285

Query: 301 AIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVD 360
           AIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETG GYG+WLHGEAVAAG VMA D
Sbjct: 286 AIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGPGYGEWLHGEAVAAGTVMAAD 345

Query: 361 MSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSIMAVDKKVADGLLRLILLKG 420
           MSYRLGWID S+V R+  +L++AKLPT PP+ MTVEMFKS+MAVDKKVADGLLRLILLKG
Sbjct: 346 MSYRLGWIDMSLVNRIFALLKRAKLPTNPPEKMTVEMFKSLMAVDKKVADGLLRLILLKG 405

Query: 421 PLGNCVFTGDYDRKALDDTLYAFCKS 446
            LGNCVFTGD+DR+AL++TL AFCKS
Sbjct: 406 ELGNCVFTGDFDREALEETLRAFCKS 431

Length = 433
>gnl|CDD|234565 PRK00002, aroB, 3-dehydroquinate synthase; Reviewed Back     alignment and domain information
>gnl|CDD|173954 cd08195, DHQS, Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis Back     alignment and domain information
>gnl|CDD|223414 COG0337, AroB, 3-dehydroquinate synthetase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|216685 pfam01761, DHQ_synthase, 3-dehydroquinate synthase Back     alignment and domain information
>gnl|CDD|233374 TIGR01357, aroB, 3-dehydroquinate synthase Back     alignment and domain information
>gnl|CDD|173928 cd08169, DHQ-like, Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase Back     alignment and domain information
>gnl|CDD|173956 cd08197, DOIS, 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics Back     alignment and domain information
>gnl|CDD|173957 cd08198, DHQS-like2, Dehydroquinate synthase (DHQS)-like Back     alignment and domain information
>gnl|CDD|184458 PRK14021, PRK14021, bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional Back     alignment and domain information
>gnl|CDD|235740 PRK06203, aroB, 3-dehydroquinate synthase; Reviewed Back     alignment and domain information
>gnl|CDD|173955 cd08196, DHQS-like1, Dehydroquinate synthase (DHQS)-like Back     alignment and domain information
>gnl|CDD|173958 cd08199, EEVS, 2-epi-5-epi-valiolone synthase (EEVS) Back     alignment and domain information
>gnl|CDD|172457 PRK13951, PRK13951, bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional Back     alignment and domain information
>gnl|CDD|173927 cd07766, DHQ_Fe-ADH, Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH) Back     alignment and domain information
>gnl|CDD|222318 pfam13685, Fe-ADH_2, Iron-containing alcohol dehydrogenase Back     alignment and domain information
>gnl|CDD|173934 cd08175, G1PDH, Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner Back     alignment and domain information
>gnl|CDD|223448 COG0371, GldA, Glycerol dehydrogenase and related enzymes [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|173932 cd08173, Gro1PDH, Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme Back     alignment and domain information
>gnl|CDD|179139 PRK00843, egsA, NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed Back     alignment and domain information
>gnl|CDD|173933 cd08174, G1PDH-like, Glycerol-1-phosphate dehydrogenase-like Back     alignment and domain information
>gnl|CDD|215932 pfam00465, Fe-ADH, Iron-containing alcohol dehydrogenase Back     alignment and domain information
>gnl|CDD|173959 cd08549, G1PDH_related, Glycerol-1-phosphate_dehydrogenase and related proteins Back     alignment and domain information
>gnl|CDD|224371 COG1454, EutG, Alcohol dehydrogenase, class IV [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|173931 cd08172, GlyDH-like1, Glycerol dehydrogenases-like Back     alignment and domain information
>gnl|CDD|173960 cd08550, GlyDH-like, Glycerol_dehydrogenase-like Back     alignment and domain information
>gnl|CDD|173939 cd08180, PDD, 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 446
COG0337360 AroB 3-dehydroquinate synthetase [Amino acid trans 100.0
PLN02834433 3-dehydroquinate synthase 100.0
cd08198369 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DH 100.0
cd08197355 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) cataly 100.0
cd08195345 DHQS Dehydroquinate synthase (DHQS) catalyzes the 100.0
PRK00002358 aroB 3-dehydroquinate synthase; Reviewed 100.0
cd08169344 DHQ-like Dehydroquinate synthase-like which includ 100.0
cd08196346 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DH 100.0
PRK14021542 bifunctional shikimate kinase/3-dehydroquinate syn 100.0
TIGR01357344 aroB 3-dehydroquinate synthase. This model represe 100.0
cd08199354 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi- 100.0
PRK06203389 aroB 3-dehydroquinate synthase; Reviewed 100.0
PRK13951488 bifunctional shikimate kinase/3-dehydroquinate syn 100.0
PF01761260 DHQ_synthase: 3-dehydroquinate synthase; PDB: 3OKF 100.0
PRK00843350 egsA NAD(P)-dependent glycerol-1-phosphate dehydro 100.0
cd08549332 G1PDH_related Glycerol-1-phosphate_dehydrogenase a 100.0
COG1454377 EutG Alcohol dehydrogenase, class IV [Energy produ 100.0
cd07766332 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) 100.0
cd08173339 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro 100.0
cd08174331 G1PDH-like Glycerol-1-phosphate dehydrogenase-like 100.0
cd08175348 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) c 100.0
PRK09860383 putative alcohol dehydrogenase; Provisional 100.0
cd08178398 AAD_C C-terminal alcohol dehydrogenase domain of t 100.0
cd08182367 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) c 100.0
PRK15454395 ethanol dehydrogenase EutG; Provisional 100.0
TIGR02638379 lactal_redase lactaldehyde reductase. This clade o 100.0
cd08189374 Fe-ADH5 Iron-containing alcohol dehydrogenases-lik 100.0
cd08193376 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyze 100.0
cd08177337 MAR Maleylacetate reductase is involved in many ar 100.0
PRK10624382 L-1,2-propanediol oxidoreductase; Provisional 100.0
cd08185380 Fe-ADH1 Iron-containing alcohol dehydrogenases-lik 100.0
cd08186383 Fe-ADH8 Iron-containing alcohol dehydrogenase. Typ 100.0
cd08192370 Fe-ADH7 Iron-containing alcohol dehydrogenases-lik 100.0
cd08176377 LPO Lactadehyde:propanediol oxidoreductase (LPO) c 100.0
TIGR03405355 Phn_Fe-ADH phosphonate metabolism-associated iron- 100.0
cd08194375 Fe-ADH6 Iron-containing alcohol dehydrogenases-lik 100.0
cd08188377 Fe-ADH4 Iron-containing alcohol dehydrogenases-lik 100.0
cd08190414 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) inv 100.0
cd08187382 BDH Butanol dehydrogenase catalyzes the conversion 100.0
cd08191386 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyz 100.0
cd08180332 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes 100.0
cd08183374 Fe-ADH2 Iron-containing alcohol dehydrogenases-lik 100.0
cd08179375 NADPH_BDH NADPH-dependent butanol dehydrogenase in 100.0
cd08551370 Fe-ADH iron-containing alcohol dehydrogenases (Fe- 100.0
cd08172347 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol 100.0
cd08550349 GlyDH-like Glycerol_dehydrogenase-like. Families o 100.0
cd08181357 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 100.0
cd08170351 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes ox 100.0
PRK09423366 gldA glycerol dehydrogenase; Provisional 100.0
PRK15138387 aldehyde reductase; Provisional 100.0
cd08184347 Fe-ADH3 Iron-containing alcohol dehydrogenases-lik 100.0
PF00465366 Fe-ADH: Iron-containing alcohol dehydrogenase ; In 100.0
COG0371360 GldA Glycerol dehydrogenase and related enzymes [E 100.0
COG1979384 Uncharacterized oxidoreductases, Fe-dependent alco 100.0
cd08171345 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol 100.0
PRK13805862 bifunctional acetaldehyde-CoA/alcohol dehydrogenas 100.0
PRK10586362 putative oxidoreductase; Provisional 100.0
KOG3857465 consensus Alcohol dehydrogenase, class IV [Energy 100.0
PF13685250 Fe-ADH_2: Iron-containing alcohol dehydrogenase; P 99.98
KOG0692 595 consensus Pentafunctional AROM protein [Amino acid 97.33
TIGR01162156 purE phosphoribosylaminoimidazole carboxylase, Pur 96.51
PF00731150 AIRC: AIR carboxylase; InterPro: IPR000031 Phospho 96.44
COG0041162 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) m 95.13
COG1570440 XseA Exonuclease VII, large subunit [DNA replicati 91.75
PLN02948577 phosphoribosylaminoimidazole carboxylase 91.69
PRK13337304 putative lipid kinase; Reviewed 91.52
PLN02958481 diacylglycerol kinase/D-erythro-sphingosine kinase 91.47
PRK13054300 lipid kinase; Reviewed 91.19
PRK13055334 putative lipid kinase; Reviewed 90.82
PRK11914306 diacylglycerol kinase; Reviewed 90.44
TIGR00237432 xseA exodeoxyribonuclease VII, large subunit. This 90.3
PRK00286438 xseA exodeoxyribonuclease VII large subunit; Revie 90.29
TIGR00147293 lipid kinase, YegS/Rv2252/BmrU family. The E. coli 89.53
TIGR03702293 lip_kinase_YegS lipid kinase YegS. Members of this 89.09
PF02601319 Exonuc_VII_L: Exonuclease VII, large subunit; Inte 88.06
PRK13059295 putative lipid kinase; Reviewed 87.76
COG3340224 PepE Peptidase E [Amino acid transport and metabol 87.15
COG1597301 LCB5 Sphingosine kinase and enzymes related to euk 85.8
PRK03202320 6-phosphofructokinase; Provisional 82.06
PF06506176 PrpR_N: Propionate catabolism activator; InterPro: 81.92
PF01513285 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Me 80.9
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=8e-80  Score=613.31  Aligned_cols=359  Identities=58%  Similarity=0.945  Sum_probs=338.0

Q ss_pred             CeEEEEecCCCceeEEEccCcCCChhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCcH
Q 013271           82 PTIVEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNM  161 (446)
Q Consensus        82 ~~~~~~~~~~~~~~I~~G~g~~~~~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t~  161 (446)
                      |.++.+.+++++|+|++|+|.+++. .+.+...++|++||||+++.++|.+++...|+..|  +.+..+++|+||..||+
T Consensus         1 ~~~~~v~l~~~~y~I~ig~gl~~~~-~l~~~~~~~k~~ivtd~~v~~~y~~~~~~~l~~~g--~~v~~~~lp~GE~~Ksl   77 (360)
T COG0337           1 MQTITVTLGERSYPIYIGSGLLSDA-ELAELLAGRKVAIVTDETVAPLYLEKLLATLEAAG--VEVDSIVLPDGEEYKSL   77 (360)
T ss_pred             CceEEEecCCCceeEEEeCCcccch-hhhhhccCCeEEEEECchhHHHHHHHHHHHHHhcC--CeeeEEEeCCCcccccH
Confidence            5678999999999999999999954 23333246799999999999999999999999999  46777899999999999


Q ss_pred             HHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCccccccccCeEEEeeCCccccccccc
Q 013271          162 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFY  241 (446)
Q Consensus       162 ~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~~K~~ig~~~  241 (446)
                      ++++++++.+.+.+++|++.|||+|||+++|+++|+|++|+||+++|+|||||+||+||++|+|++||++.+||++|+||
T Consensus        78 ~~~~~i~~~ll~~~~~R~s~iialGGGvigDlaGF~Aaty~RGv~fiqiPTTLLAqVDSSVGGKtgIN~~~gKNmIGaF~  157 (360)
T COG0337          78 ETLEKIYDALLEAGLDRKSTLIALGGGVIGDLAGFAAATYMRGVRFIQIPTTLLAQVDSSVGGKTGINHPLGKNLIGAFY  157 (360)
T ss_pred             HHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHHHHHcCCCeEeccchHHHHhhcccccccccCCCCCcceeeccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhhHhHhhcchhhhh
Q 013271          242 QPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESG  321 (446)
Q Consensus       242 ~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~~~l~~~i~~s~~~~~~~v~~d~~~~G  321 (446)
                      +|++|++||+++.|||+|++++|++|+|||+++.|.++|+|++++.+.+.+.+. .+.++|.+||+.|.++|.+|++|.|
T Consensus       158 qP~aVi~D~~~L~TLp~re~~~G~AEvIK~g~I~D~~~f~~Le~~~~~l~~~~~-~l~~~I~rs~~~Ka~VV~~De~E~G  236 (360)
T COG0337         158 QPKAVLIDTDFLKTLPPRELRAGMAEVIKYGLIADPEFFDWLEENLDALLALDP-ALEELIARSCQIKAEVVAQDEKESG  236 (360)
T ss_pred             CCcEEEEchHHhccCCHHHHHHhHHHHHHHhhhcCHHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHhhHHhhcCccchh
Confidence            999999999999999999999999999999999999999999998555555554 4889999999999999999999999


Q ss_pred             hHhhcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHH
Q 013271          322 LRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSI  401 (446)
Q Consensus       322 ~r~~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~i~~ll~~lGlP~~~~~~i~~e~~~~~  401 (446)
                      +|+.||+|||||||+|+.++|+.|+||||||+||.+++++++++|+++.+.++|+.++++++|+|+..++.++.+.+.+.
T Consensus       237 ~R~~LN~GHT~GHAiE~~~~y~~~~HGeAVaiGmv~aa~ls~~lG~~~~~~~~r~~~~L~~~gLP~~~~~~~~~~~l~~~  316 (360)
T COG0337         237 LRAILNLGHTFGHAIEALTGYGKWLHGEAVAIGMVMAARLSERLGLLDKADAERILNLLKRYGLPTSLPDELDAEKLLEA  316 (360)
T ss_pred             hHHHHhcchHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCccCCCcCCHHHHHHH
Confidence            99999999999999999999966999999999999999999999999999999999999999999999876899999999


Q ss_pred             HHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHHHHHHHHHhh
Q 013271          402 MAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFCK  445 (446)
Q Consensus       402 l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~l~~~~~  445 (446)
                      |..|||+++|+++||+|++ ||++....+++++++.++++.+++
T Consensus       317 m~~DKK~~~g~i~~vl~~~-iG~~~~~~~v~~~~l~~~l~~~~~  359 (360)
T COG0337         317 MARDKKVLGGKIRFVLLKE-IGKAEIAEGVDEELLLDALEEVHA  359 (360)
T ss_pred             HhhcccccCCceEEEeehh-cCceEeecCCCHHHHHHHHHHHhc
Confidence            9999999999999999998 999999988999999999998875

>PLN02834 3-dehydroquinate synthase Back     alignment and domain information
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like Back     alignment and domain information
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics Back     alignment and domain information
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis Back     alignment and domain information
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed Back     alignment and domain information
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase Back     alignment and domain information
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like Back     alignment and domain information
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional Back     alignment and domain information
>TIGR01357 aroB 3-dehydroquinate synthase Back     alignment and domain information
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS) Back     alignment and domain information
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed Back     alignment and domain information
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional Back     alignment and domain information
>PF01761 DHQ_synthase: 3-dehydroquinate synthase; PDB: 3OKF_A 1NVA_B 1NUA_A 1NVE_D 1NVB_B 1SG6_A 1NR5_A 1NRX_B 1NVD_A 1NVF_C Back     alignment and domain information
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed Back     alignment and domain information
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins Back     alignment and domain information
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion] Back     alignment and domain information
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH) Back     alignment and domain information
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme Back     alignment and domain information
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like Back     alignment and domain information
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner Back     alignment and domain information
>PRK09860 putative alcohol dehydrogenase; Provisional Back     alignment and domain information
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD) Back     alignment and domain information
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) Back     alignment and domain information
>PRK15454 ethanol dehydrogenase EutG; Provisional Back     alignment and domain information
>TIGR02638 lactal_redase lactaldehyde reductase Back     alignment and domain information
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like Back     alignment and domain information
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor Back     alignment and domain information
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes Back     alignment and domain information
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional Back     alignment and domain information
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like Back     alignment and domain information
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase Back     alignment and domain information
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway Back     alignment and domain information
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria Back     alignment and domain information
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase Back     alignment and domain information
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like Back     alignment and domain information
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like Back     alignment and domain information
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism Back     alignment and domain information
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process Back     alignment and domain information
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate Back     alignment and domain information
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism Back     alignment and domain information
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like Back     alignment and domain information
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria Back     alignment and domain information
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like Back     alignment and domain information
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like Back     alignment and domain information
>cd08550 GlyDH-like Glycerol_dehydrogenase-like Back     alignment and domain information
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD) Back     alignment and domain information
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation Back     alignment and domain information
>PRK09423 gldA glycerol dehydrogenase; Provisional Back     alignment and domain information
>PRK15138 aldehyde reductase; Provisional Back     alignment and domain information
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like Back     alignment and domain information
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1 Back     alignment and domain information
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion] Back     alignment and domain information
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion] Back     alignment and domain information
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like Back     alignment and domain information
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional Back     alignment and domain information
>PRK10586 putative oxidoreductase; Provisional Back     alignment and domain information
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion] Back     alignment and domain information
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C Back     alignment and domain information
>KOG0692 consensus Pentafunctional AROM protein [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein Back     alignment and domain information
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE Back     alignment and domain information
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism] Back     alignment and domain information
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>PLN02948 phosphoribosylaminoimidazole carboxylase Back     alignment and domain information
>PRK13337 putative lipid kinase; Reviewed Back     alignment and domain information
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase Back     alignment and domain information
>PRK13054 lipid kinase; Reviewed Back     alignment and domain information
>PRK13055 putative lipid kinase; Reviewed Back     alignment and domain information
>PRK11914 diacylglycerol kinase; Reviewed Back     alignment and domain information
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit Back     alignment and domain information
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed Back     alignment and domain information
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family Back     alignment and domain information
>TIGR03702 lip_kinase_YegS lipid kinase YegS Back     alignment and domain information
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3 Back     alignment and domain information
>PRK13059 putative lipid kinase; Reviewed Back     alignment and domain information
>COG3340 PepE Peptidase E [Amino acid transport and metabolism] Back     alignment and domain information
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only] Back     alignment and domain information
>PRK03202 6-phosphofructokinase; Provisional Back     alignment and domain information
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] Back     alignment and domain information
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query446
3okf_A390 2.5 Angstrom Resolution Crystal Structure Of 3-Dehy 1e-94
3clh_A343 Crystal Structure Of 3-Dehydroquinate Synthase (Dhq 5e-53
3qbd_A368 3-Dehydroquinate Synthase (Arob) From Mycobacterium 6e-47
1xag_A354 Crystal Structure Of Staphlyococcus Aureus 3-Dehydr 2e-43
1dqs_A393 Crystal Structure Of Dehydroquinate Synthase (Dhqs) 1e-42
1ujn_A348 Crystal Structure Of Dehydroquinate Synthase From T 2e-30
2d2x_A368 Crystal Structure Of 2-Deoxy-Scyllo-Inosose Synthas 4e-28
>pdb|3OKF|A Chain A, 2.5 Angstrom Resolution Crystal Structure Of 3-Dehydroquinate Synthase (Arob) From Vibrio Cholerae Length = 390 Back     alignment and structure 
Iteration: 1

 Score =  343 bits (879), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 174/325 (53%), Positives = 216/325 (66%), Gaps = 5/325 (1%)
Query: 85  VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTR-GNP 143
           + V+LG+RSYPI IG+GL  +P LL    + +KV++VTN+TVAPLY   +   L   G  
Sbjct: 33  ITVNLGERSYPISIGAGLFANPALLSLSAK-QKVVIVTNHTVAPLYAPAIISLLDHIGCQ 91
Query: 144 NVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLR 203
           +  +E   LPDGE YK ++T   V    +E    R    +ALGGGVIGD+ G+AAA Y R
Sbjct: 92  HALLE---LPDGEQYKTLETFNTVMSFLLEHNYSRDVVVIALGGGVIGDLVGFAAACYQR 148
Query: 204 GVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLPDRELAS 263
           GV FIQIPTT+++QVDSSVGGKT +NH LGKN+IGAFYQP+ V++DTD L TLP RE A+
Sbjct: 149 GVDFIQIPTTLLSQVDSSVGGKTAVNHPLGKNMIGAFYQPKAVVIDTDCLTTLPAREFAA 208
Query: 264 GLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLR 323
           G+AEVIKYG+I D+ FF+W E  M  L A D +A  YAI R C+ KAEVV+ DEKESG+R
Sbjct: 209 GMAEVIKYGIIYDSAFFDWLEAQMEALYALDEQALTYAIARCCQIKAEVVAQDEKESGIR 268
Query: 324 ATLNLGHTFGHAIETGFGYGQWLHGEXXXXXXXXXXXXSYRLGWIDDSIVKRVHNILQQA 383
           A LNLGHTFGHAIE   GYG WLHGE            +   G ID S  +R+  IL++A
Sbjct: 269 ALLNLGHTFGHAIEAHMGYGNWLHGEAVSAGTVMAAKTAQLQGLIDASQFERILAILKKA 328
Query: 384 KLPTAPPDTMTVEMFKSIMAVDKKV 408
            LP   P+ MT   F   M  DKKV
Sbjct: 329 HLPVRTPENMTFADFMQHMMRDKKV 353
>pdb|3CLH|A Chain A, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs)from Helicobacter Pylori Length = 343 Back     alignment and structure
>pdb|3QBD|A Chain A, 3-Dehydroquinate Synthase (Arob) From Mycobacterium Tuberculosis In Complex With Nad Length = 368 Back     alignment and structure
>pdb|1XAG|A Chain A, Crystal Structure Of Staphlyococcus Aureus 3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+, Nad+ And Carbaphosphonate Length = 354 Back     alignment and structure
>pdb|1DQS|A Chain A, Crystal Structure Of Dehydroquinate Synthase (Dhqs) Complexed With Carbaphosphonate, Nad+ And Zn2+ Length = 393 Back     alignment and structure
>pdb|1UJN|A Chain A, Crystal Structure Of Dehydroquinate Synthase From Thermus Thermophilus Hb8 Length = 348 Back     alignment and structure
>pdb|2D2X|A Chain A, Crystal Structure Of 2-Deoxy-Scyllo-Inosose Synthase Length = 368 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query446
3okf_A390 3-dehydroquinate synthase; structural genomics, ce 0.0
2gru_A368 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2 0.0
3clh_A343 3-dehydroquinate synthase; shikimate pathway, arom 0.0
1xah_A354 Sadhqs, 3-dehydroquinate synthase; shikimate pathw 0.0
3qbe_A368 3-dehydroquinate synthase; shikimate pathway, myco 0.0
1sg6_A393 Pentafunctional AROM polypeptide; shikimate pathwa 0.0
1ujn_A348 Dehydroquinate synthase; riken structu genomics/pr 0.0
3ce9_A354 Glycerol dehydrogenase; NP_348253.1, 3-dehydroquin 6e-39
1ta9_A450 Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosa 2e-28
1jq5_A370 Glycerol dehydrogenase; oxidoreductase, NAD, glyce 3e-18
3uhj_A387 Probable glycerol dehydrogenase; structural genomi 6e-17
1kq3_A376 Glycerol dehydrogenase; structural genomics, joint 5e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
3ox4_A383 Alcohol dehydrogenase 2; iron, NAD, oxidoreductase 7e-04
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor} Length = 390 Back     alignment and structure
 Score =  603 bits (1556), Expect = 0.0
 Identities = 188/389 (48%), Positives = 240/389 (61%), Gaps = 13/389 (3%)

Query: 66  YASSAAPMMDQTVSKAPT--------IVEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKK 117
           + SS   +  + +              + V+LG+RSYPI IG+GL  +P LL      +K
Sbjct: 6   HHSSGVDLGTENLYFQSNAMECKTMERITVNLGERSYPISIGAGLFANPALLSLS-AKQK 64

Query: 118 VLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLD 177
           V++VTN+TVAPLY   +   L           + LPDGE YK ++T   V    +E    
Sbjct: 65  VVIVTNHTVAPLYAPAIISLLDHIG--CQHALLELPDGEQYKTLETFNTVMSFLLEHNYS 122

Query: 178 RRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLI 237
           R    +ALGGGVIGD+ G+AAA Y RGV FIQIPTT+++QVDSSVGGKT +NH LGKN+I
Sbjct: 123 RDVVVIALGGGVIGDLVGFAAACYQRGVDFIQIPTTLLSQVDSSVGGKTAVNHPLGKNMI 182

Query: 238 GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRA 297
           GAFYQP+ V++DTD L TLP RE A+G+AEVIKYG+I D+ FF+W E  M  L A D +A
Sbjct: 183 GAFYQPKAVVIDTDCLTTLPAREFAAGMAEVIKYGIIYDSAFFDWLEAQMEALYALDEQA 242

Query: 298 FAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVM 357
             YAI R C+ KAEVV+ DEKESG+RA LNLGHTFGHAIE   GYG WLHGEAV+AG VM
Sbjct: 243 LTYAIARCCQIKAEVVAQDEKESGIRALLNLGHTFGHAIEAHMGYGNWLHGEAVSAGTVM 302

Query: 358 AVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSIMAVDKKVADGLLRLIL 417
           A   +   G ID S  +R+  IL++A LP   P+ MT   F   M  DKKV  G LRL+L
Sbjct: 303 AAKTAQLQGLIDASQFERILAILKKAHLPVRTPENMTFADFMQHMMRDKKVLAGELRLVL 362

Query: 418 LKGPLGNCVFTGDYDRKALDDTLYAFCKS 446
               +G            +   +  +C++
Sbjct: 363 PTS-IGTSAVVKGVPEAVIAQAI-EYCRT 389
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A* Length = 368 Back     alignment and structure
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori} Length = 343 Back     alignment and structure
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A* Length = 354 Back     alignment and structure
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A Length = 368 Back     alignment and structure
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A* Length = 393 Back     alignment and structure
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1 Length = 348 Back     alignment and structure
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824} Length = 354 Back     alignment and structure
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe} Length = 450 Back     alignment and structure
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A* Length = 370 Back     alignment and structure
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti} Length = 387 Back     alignment and structure
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2 Length = 376 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A* Length = 383 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query446
3okf_A390 3-dehydroquinate synthase; structural genomics, ce 100.0
3qbe_A368 3-dehydroquinate synthase; shikimate pathway, myco 100.0
2gru_A368 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2 100.0
3clh_A343 3-dehydroquinate synthase; shikimate pathway, arom 100.0
1xah_A354 Sadhqs, 3-dehydroquinate synthase; shikimate pathw 100.0
1ujn_A348 Dehydroquinate synthase; riken structu genomics/pr 100.0
1sg6_A393 Pentafunctional AROM polypeptide; shikimate pathwa 100.0
3bfj_A387 1,3-propanediol oxidoreductase; opportunistic path 100.0
1rrm_A386 Lactaldehyde reductase; structural genomics, dehyd 100.0
3ce9_A354 Glycerol dehydrogenase; NP_348253.1, 3-dehydroquin 100.0
1jq5_A370 Glycerol dehydrogenase; oxidoreductase, NAD, glyce 100.0
1vlj_A407 NADH-dependent butanol dehydrogenase; TM0820, stru 100.0
3ox4_A383 Alcohol dehydrogenase 2; iron, NAD, oxidoreductase 100.0
1oj7_A408 Hypothetical oxidoreductase YQHD; structural genom 100.0
1o2d_A371 Alcohol dehydrogenase, iron-containing; TM0920, st 100.0
3jzd_A358 Iron-containing alcohol dehydrogenase; YP_298327.1 100.0
3hl0_A353 Maleylacetate reductase; structur genomics, PSI-2, 100.0
3uhj_A387 Probable glycerol dehydrogenase; structural genomi 100.0
1ta9_A450 Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosa 100.0
1kq3_A376 Glycerol dehydrogenase; structural genomics, joint 100.0
3iv7_A364 Alcohol dehydrogenase IV; NP_602249.1, iron-contai 100.0
3rf7_A375 Iron-containing alcohol dehydrogenase; structural 100.0
3trh_A169 Phosphoribosylaminoimidazole carboxylase carboxylt 96.02
3oow_A166 Phosphoribosylaminoimidazole carboxylase,catalyic; 95.97
3lp6_A174 Phosphoribosylaminoimidazole carboxylase catalyti; 95.79
1u11_A182 PURE (N5-carboxyaminoimidazole ribonucleotide MUT; 95.78
3ors_A163 N5-carboxyaminoimidazole ribonucleotide mutase; is 95.75
3kuu_A174 Phosphoribosylaminoimidazole carboxylase catalyti 95.64
1xmp_A170 PURE, phosphoribosylaminoimidazole carboxylase; pu 95.48
3rg8_A159 Phosphoribosylaminoimidazole carboxylase, PURE PR; 95.47
1o4v_A183 Phosphoribosylaminoimidazole mutase PURE; structur 95.45
4grd_A173 N5-CAIR mutase, phosphoribosylaminoimidazole carbo 95.41
4b4k_A181 N5-carboxyaminoimidazole ribonucleotide mutase; is 94.56
2h31_A425 Multifunctional protein ADE2; alpha-beta-alpha, li 94.0
2bon_A332 Lipid kinase; DAG kinase, transferase; 1.90A {Esch 93.53
2ywx_A157 Phosphoribosylaminoimidazole carboxylase catalyti; 92.69
2qv7_A337 Diacylglycerol kinase DGKB; alpha-beta domain 1, b 91.79
3s40_A304 Diacylglycerol kinase; structural genomics, the ce 90.79
2i2c_A272 Probable inorganic polyphosphate/ATP-NAD kinase 1; 88.59
1u0t_A307 Inorganic polyphosphate/ATP-NAD kinase; alpha-beta 86.89
2an1_A292 Putative kinase; structural genomics, PSI, protein 86.63
2pju_A225 Propionate catabolism operon regulatory protein; s 83.73
2q5c_A196 NTRC family transcriptional regulator; structural 83.62
1pfk_A320 Phosphofructokinase; transferase(phosphotransferas 82.22
3hno_A419 Pyrophosphate-dependent phosphofructokinase; struc 80.38
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor} Back     alignment and structure
Probab=100.00  E-value=2.4e-76  Score=604.61  Aligned_cols=360  Identities=51%  Similarity=0.822  Sum_probs=340.4

Q ss_pred             CCeEEEEecCCCceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCC
Q 013271           81 APTIVEVDLGQRSYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYK  159 (446)
Q Consensus        81 ~~~~~~~~~~~~~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~  159 (446)
                      .|++++|++++++|+|+||+|++++ + +++.. .++|++||||+++.+.+.+++.+.|++.|  +++..++++++|++|
T Consensus        29 ~m~~~~v~l~~~~y~I~~G~g~l~~l~-~l~~~-~~~rvlIVtd~~v~~~~~~~v~~~L~~~g--~~~~~~~~~~gE~~k  104 (390)
T 3okf_A           29 TMERITVNLGERSYPISIGAGLFANPA-LLSLS-AKQKVVIVTNHTVAPLYAPAIISLLDHIG--CQHALLELPDGEQYK  104 (390)
T ss_dssp             CEEEEEECCGGGCEEEEEETTGGGCGG-GGCCC-TTCEEEEEEETTTHHHHHHHHHHHHHHHT--CEEEEEEECSSGGGC
T ss_pred             CceEEEEECCCCCCCEEEeCCHHHhHH-HHHhc-CCCEEEEEECCcHHHHHHHHHHHHHHHcC--CeEEEEEECCCcCCc
Confidence            5788999999999999999999999 8 77654 57999999999999999999999999988  466677899999999


Q ss_pred             cHHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCccccccccCeEEEeeCCccccccc
Q 013271          160 NMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGA  239 (446)
Q Consensus       160 t~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~~K~~ig~  239 (446)
                      ++++++++++.++++++||+|+|||||||+++|+|||+|++|++|+|+|+||||++|++||++|++++++.+.+||++|.
T Consensus       105 t~~~v~~~~~~l~~~~~~R~d~IIAvGGGsv~D~ak~~Aa~~~rgip~I~IPTTlla~vDssvggkt~I~~~~~Kn~ig~  184 (390)
T 3okf_A          105 TLETFNTVMSFLLEHNYSRDVVVIALGGGVIGDLVGFAAACYQRGVDFIQIPTTLLSQVDSSVGGKTAVNHPLGKNMIGA  184 (390)
T ss_dssp             BHHHHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHHBTTCCEEEEEECSHHHHHHTSSSCEEEEEETTEEEEEEE
T ss_pred             hHHHHHHHHHHHHhcCCCcCcEEEEECCcHHhhHHHHHHHHhcCCCCEEEeCCCCccccccCcCCeEEEEcCCCceEEee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhhHhHhhcchhh
Q 013271          240 FYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKE  319 (446)
Q Consensus       240 ~~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~~~l~~~i~~s~~~~~~~v~~d~~~  319 (446)
                      |++|.+||+||+++.|+|++++++|++|+|||+++.||++|+|++.+..++.+.+.+.+.++|.+|++.|.++++.|++|
T Consensus       185 f~~P~~ViiD~~~l~tlP~r~~~aG~~D~lkha~i~D~~~~~~l~~~~~~l~~~~~~~l~~~i~~s~~~K~~vV~~D~~E  264 (390)
T 3okf_A          185 FYQPKAVVIDTDCLTTLPAREFAAGMAEVIKYGIIYDSAFFDWLEAQMEALYALDEQALTYAIARCCQIKAEVVAQDEKE  264 (390)
T ss_dssp             ECCCSEEEEEGGGGGGSCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             ccCCCEEEEcHHHHhhCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHHHHHHhcCCchh
Confidence            99999999999999999999999999999999999999999999988777777788889999999999999999999999


Q ss_pred             hhhHhhcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHH
Q 013271          320 SGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFK  399 (446)
Q Consensus       320 ~G~r~~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~i~~ll~~lGlP~~~~~~i~~e~~~  399 (446)
                      .|+|+.||||||||||||..++|+.++||||||+||.++++++.++|+++++.++++.++|+++|+|++++..++.+++.
T Consensus       265 ~g~R~~Ln~GHT~gHAiE~~~~~~~~~HGeaVaiGm~~~a~ls~~~g~~~~~~~~ri~~~l~~~glp~~~~~~~~~~~~~  344 (390)
T 3okf_A          265 SGIRALLNLGHTFGHAIEAHMGYGNWLHGEAVSAGTVMAAKTAQLQGLIDASQFERILAILKKAHLPVRTPENMTFADFM  344 (390)
T ss_dssp             -CGGGGGGTTHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTCCCSCCTTCCHHHHH
T ss_pred             hcccchhccchHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHH
Confidence            99999999999999999998878679999999999999999999999999999999999999999999988658999999


Q ss_pred             HHHHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHHHHHHHHHhh
Q 013271          400 SIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFCK  445 (446)
Q Consensus       400 ~~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~l~~~~~  445 (446)
                      +.|.+|||+++|+++|+||++ ||++.+..+++++++.++++++++
T Consensus       345 ~~m~~DKK~~~g~i~~vL~~~-iG~~~~~~~v~~~~l~~~l~~~~~  389 (390)
T 3okf_A          345 QHMMRDKKVLAGELRLVLPTS-IGTSAVVKGVPEAVIAQAIEYCRT  389 (390)
T ss_dssp             HHHTGGGTCCTTCCEEEEEEE-TTEEEEEECCCHHHHHHHHHHTTC
T ss_pred             HHHHhhhcccCCEEEEEEECC-CCcEEEECCCCHHHHHHHHHHhcc
Confidence            999999999999999999998 999999989999999999988754
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A Back     alignment and structure
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A* Back     alignment and structure
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori} Back     alignment and structure
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A* Back     alignment and structure
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1 Back     alignment and structure
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A* Back     alignment and structure
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae} Back     alignment and structure
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A* Back     alignment and structure
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824} Back     alignment and structure
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A* Back     alignment and structure
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2 Back     alignment and structure
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A* Back     alignment and structure
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2 Back     alignment and structure
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A* Back     alignment and structure
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha} Back     alignment and structure
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str} Back     alignment and structure
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti} Back     alignment and structure
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe} Back     alignment and structure
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2 Back     alignment and structure
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} Back     alignment and structure
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans} Back     alignment and structure
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii} Back     alignment and structure
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A* Back     alignment and structure
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0 Back     alignment and structure
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A Back     alignment and structure
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp} Back     alignment and structure
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A* Back     alignment and structure
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1 Back     alignment and structure
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A* Back     alignment and structure
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1 Back     alignment and structure
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia} Back     alignment and structure
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis} Back     alignment and structure
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens} Back     alignment and structure
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A Back     alignment and structure
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii} Back     alignment and structure
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A Back     alignment and structure
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A Back     alignment and structure
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A* Back     alignment and structure
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A Back     alignment and structure
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium} Back     alignment and structure
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1 Back     alignment and structure
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824} Back     alignment and structure
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A Back     alignment and structure
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 446
d1sg6a_389 e.22.1.1 (A:) Dehydroquinate synthase, DHQS {Asper 1e-70
d1ujna_347 e.22.1.1 (A:) Dehydroquinate synthase, DHQS {Therm 1e-55
d1jq5a_366 e.22.1.2 (A:) Glycerol dehydrogenase {Bacillus ste 2e-25
d1kq3a_364 e.22.1.2 (A:) Glycerol dehydrogenase {Thermotoga m 1e-21
>d1sg6a_ e.22.1.1 (A:) Dehydroquinate synthase, DHQS {Aspergillus nidulans [TaxId: 162425]} Length = 389 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Dehydroquinate synthase-like
superfamily: Dehydroquinate synthase-like
family: Dehydroquinate synthase, DHQS
domain: Dehydroquinate synthase, DHQS
species: Aspergillus nidulans [TaxId: 162425]

 Score =  226 bits (576), Expect = 1e-70
 Identities = 128/383 (33%), Positives = 182/383 (47%), Gaps = 37/383 (9%)

Query: 82  PTIVEVDLGQRSYPIYIGSGLLDH--PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALT 139
           PT + + LG+ S  I    GL  +     L         ++VT+  +  +Y     +A  
Sbjct: 1   PTKISI-LGRES--IIADFGLWRNYVAKDLISDCSSTTYVLVTDTNIGSIYTPSFEEAFR 57

Query: 140 RGNPNVSVEN----VILPDGENYKNMDTLMKVFDKAIESR--LDRRCTFVALGGGVIGDM 193
           +    ++          P GE  K+  T   + D  +       R    +ALGGGVIGD+
Sbjct: 58  KRAAEITPSPRLLIYNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTVVIALGGGVIGDL 117

Query: 194 CGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTL 253
            G+ A++Y+RGV ++Q+PTT++A VDSS+GGKT I+  LGKNLIGA +QP  + +D + L
Sbjct: 118 TGFVASTYMRGVRYVQVPTTLLAMVDSSIGGKTAIDTPLGKNLIGAIWQPTKIYIDLEFL 177

Query: 254 NTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMA--------------RDPRAFA 299
            TLP RE  +G+AEVIK   I   E F   E+N   ++                      
Sbjct: 178 ETLPVREFINGMAEVIKTAAISSEEEFTALEENAETILKAVRREVTPGEHRFEGTEEILK 237

Query: 300 YAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAV 359
             I  S  +KA VVS DE+E GLR  LN GH+ GHAIE      Q LHGE VA GMV   
Sbjct: 238 ARILASARHKAYVVSADEREGGLRNLLNWGHSIGHAIEAILTP-QILHGECVAIGMVKEA 296

Query: 360 DMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDT----------MTVEMFKSIMAVDKKVA 409
           +++  LG +    V R+   L    LPT+  D            +V+     MA+DKK  
Sbjct: 297 ELARHLGILKGVAVSRIVKCLAAYGLPTSLKDARIRKLTAGKHCSVDQLMFNMALDKKND 356

Query: 410 DGLLRLILLKGPLGNCVFTGDYD 432
               +++LL   +G    T    
Sbjct: 357 GPKKKIVLLSA-IGTPYETRASV 378
>d1ujna_ e.22.1.1 (A:) Dehydroquinate synthase, DHQS {Thermus thermophilus [TaxId: 274]} Length = 347 Back     information, alignment and structure
>d1jq5a_ e.22.1.2 (A:) Glycerol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 366 Back     information, alignment and structure
>d1kq3a_ e.22.1.2 (A:) Glycerol dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 364 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query446
d1ujna_347 Dehydroquinate synthase, DHQS {Thermus thermophilu 100.0
d1sg6a_389 Dehydroquinate synthase, DHQS {Aspergillus nidulan 100.0
d1jq5a_366 Glycerol dehydrogenase {Bacillus stearothermophilu 100.0
d1o2da_359 Alcohol dehydrogenase TM0920 {Thermotoga maritima 100.0
d1vlja_398 NADH-dependent butanol dehydrogenase A (TM0820) {T 100.0
d1rrma_385 Lactaldehyde reductase FucO {Escherichia coli [Tax 100.0
d1kq3a_364 Glycerol dehydrogenase {Thermotoga maritima [TaxId 100.0
d1oj7a_390 Hypothetical oxidoreductase yqhD {Escherichia coli 100.0
d1o4va_169 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 96.3
d1qcza_163 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 95.74
d1u11a_159 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 95.28
d1xmpa_155 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 94.68
d2qv7a1312 Diacylglycerol kinase DgkB {Staphylococcus aureus 94.51
d2bona1295 Lipid kinase YegS {Escherichia coli [TaxId: 562]} 93.97
d2pjua1186 Propionate catabolism operon regulatory protein Pr 91.1
d1u0ta_302 Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycob 86.92
d2a9pa1117 DNA-binding response regulator MicA, N-terminal do 80.49
>d1ujna_ e.22.1.1 (A:) Dehydroquinate synthase, DHQS {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Dehydroquinate synthase-like
superfamily: Dehydroquinate synthase-like
family: Dehydroquinate synthase, DHQS
domain: Dehydroquinate synthase, DHQS
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=7.2e-64  Score=505.23  Aligned_cols=338  Identities=34%  Similarity=0.482  Sum_probs=294.7

Q ss_pred             CeEEEEecCCCceeEEEccCcCCC-hhHhhhcCCCCEEEEEECCCchhHHHHHHHHHHhcCCCCeeEEEEEeCCCCCCCc
Q 013271           82 PTIVEVDLGQRSYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKN  160 (446)
Q Consensus        82 ~~~~~~~~~~~~~~I~~G~g~~~~-~~~l~~~~~~k~vliVtd~~v~~~~~~~v~~~L~~~gi~~~v~~~i~~~ge~~~t  160 (446)
                      |.+++|+ .+++|+|++|+|.+++ +++      .+++++|+|+++.+.+ +++.+.+....      .+++++||++|+
T Consensus         1 Mk~I~V~-~~~~Y~I~IG~glL~~l~~~------~~k~~iV~D~~V~~~~-~~~~~~l~~~~------i~~i~~gE~~Ks   66 (347)
T d1ujna_           1 MQRLEVR-EPVPYPILVGEGVLKEVPPL------AGPAALLFDRRVEGFA-QEVAKALGVRH------LLGLPGGEAAKS   66 (347)
T ss_dssp             CEEEEEC-SSSCEEEEEESCGGGGSCCC------SSCEEEEEEGGGHHHH-HHHHHHHTCCC------EEEECCSGGGSS
T ss_pred             CceEEeC-CCCCceEEECcCHHHHhHHH------hCCEEEEECccHHHHH-HHHHHhcCCce------EEEECCCcccCC
Confidence            7789998 5689999999999988 433      3679999999998755 55666676543      467899999999


Q ss_pred             HHHHHHHHHHHHHcCCCCcceEEEEcCccHHHHHHHHHHhhcCCCeEEEEcCCcCccccccccCeEEEeeCCcccccccc
Q 013271          161 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAF  240 (446)
Q Consensus       161 ~~~v~~~~~~~~~~~~dr~~~IIAiGGGsv~D~aK~iAa~~~~g~p~i~IPTTl~A~tds~v~~k~~i~~~~~K~~ig~~  240 (446)
                      +++++++++.+.+.+++|+|+|||||||+++|+|||+|++|+||+||++||||++|++||++|+++++|...+||.+|.|
T Consensus        67 l~~~~~i~~~l~~~~~~r~~~iiaiGGG~v~D~agf~A~~y~rgi~~i~vPTtlla~vDs~~g~k~~in~~~~kn~~g~f  146 (347)
T d1ujna_          67 LEVYGKVLSWLAEKGLPRNATLLVVGGGTLTDLGGFVAATYLRGVAYLAFPTTTLAIVDASVGGKTGINLPEGKNLVGAF  146 (347)
T ss_dssp             HHHHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHHHHBTTCCEEEEEECSHHHHHTTTSSCEEEEEETTEEEEEEEE
T ss_pred             HHHHHHHHHHHHHhhcccccceeEeechhhhhHHHHHhhhhcCCcceeeccchhhhcccccccccccccccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCceEEEEehHhhccCCHHHHHhHHHHHHHHhhccchhHHHHHHhhhhHhhcCCHHHHHHHHHHHHHhhHhHhhcchhhh
Q 013271          241 YQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKES  320 (446)
Q Consensus       241 ~~P~~viiDp~ll~tlP~~~~~sG~~Dalkha~~~D~~~~~~l~~~~~~~~~~~~~~l~~~i~~s~~~~~~~v~~d~~~~  320 (446)
                      ++|..|++||+++.|+|++++++|++|++||+++.|..+|++++....     ..+.+.+++.++++.+..++..|++|.
T Consensus       147 ~~P~~v~~D~~~l~tlp~r~~~sG~~Eiik~~~i~~~~~~~~~~~~~~-----~~~~~~~~i~~s~~~k~~~v~~d~~E~  221 (347)
T d1ujna_         147 HFPQGVYAELRALKTLPLPTFKEGLVEAFKHGLIAGDEALLKVEDLTP-----QSPRLEAFLARAVAVKVRVTEEDPLEK  221 (347)
T ss_dssp             CCCSEEEEEGGGGGGSCHHHHHHHHHHHHHHHHHHTCGGGGCCTTCCT-----TCTTHHHHHHHHHHHHHHHHHHCTTSS
T ss_pred             cCCCeeeccHHHHHhhhHHHHHHHHHHHHHHhhccCHHHHHhhhhhcc-----cchHHHHHHHHHHHHhhhhhhhchhhc
Confidence            999999999999999999999999999999999988888876644321     122456889999999999999999999


Q ss_pred             hhHhhcCcchhhhhhhhhccCCCCCCcHHhhhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHH
Q 013271          321 GLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKS  400 (446)
Q Consensus       321 G~r~~l~~gHti~Hale~~~~~~~i~HGeaVAig~~~~~~la~~~g~~~~~~~~~i~~ll~~lGlP~~~~~~i~~e~~~~  400 (446)
                      |+|+.+|+|||||||+|...++ .++||||||+||.+++++++++|..  +..+++..+++.+++|...+  ++.+++.+
T Consensus       222 g~R~~ln~GHt~gHAlE~~~~~-~l~HGeaVaiGm~~~~~ls~~lg~~--~~~~~~~~l~~~~~~~~~~~--~~~~~l~~  296 (347)
T d1ujna_         222 GKRRLLNLGHTLGHALEAQTRH-ALPHGMAVAYGLLYAALLGRALGGE--DLLPPVRRLLLWLSPPPLPP--LAFEDLLP  296 (347)
T ss_dssp             SGGGGGGTTHHHHHHHHHHTTT-CSCHHHHHHHHHHHHHHHHHHTTCC--CCHHHHHHHHHHHCCCCCCC--CCHHHHGG
T ss_pred             cchhhccccchhHHHHHhhccc-chhHHHHHHHHHHHHHHHHHHhCCc--hhHHHHHHHHHhcCCCCCCC--CCHHHHHH
Confidence            9999999999999999998766 7999999999999999999999964  34678899999999987543  78899999


Q ss_pred             HHHHhHhhcCCceEEEeecCCCCceeEcCCCCHHHHHHHHHHHhh
Q 013271          401 IMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFCK  445 (446)
Q Consensus       401 ~l~~dkk~~~g~~~~vll~~~iG~~~~~~~~~~~~l~~~l~~~~~  445 (446)
                      .|..|||+++|+++|+||++ +|++.. .+++++++.+++++||.
T Consensus       297 ~m~~DKK~~~~~i~~vL~~~-iG~~~i-~~v~~~~l~~~l~~~~e  339 (347)
T d1ujna_         297 YLLRDKKKVSESLHWVVPLA-PGRLVV-RPLPEGLLREAFAAWRE  339 (347)
T ss_dssp             GC---------CCCEEEEEE-TTEEEE-ECCCHHHHHHHHHHHHH
T ss_pred             HHHhCcCcCCCceEEEEECC-CCCeEE-ecCCHHHHHHHHHHHHH
Confidence            99999999999999999998 999977 59999999999999985
>d1sg6a_ e.22.1.1 (A:) Dehydroquinate synthase, DHQS {Aspergillus nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1jq5a_ e.22.1.2 (A:) Glycerol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1o2da_ e.22.1.2 (A:) Alcohol dehydrogenase TM0920 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A (TM0820) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kq3a_ e.22.1.2 (A:) Glycerol dehydrogenase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1oj7a_ e.22.1.2 (A:) Hypothetical oxidoreductase yqhD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1qcza_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1u11a_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Acetobacter aceti [TaxId: 435]} Back     information, alignment and structure
>d1xmpa_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2pjua1 c.92.3.1 (A:11-196) Propionate catabolism operon regulatory protein PrpR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1u0ta_ e.52.1.1 (A:) Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure