Citrus Sinensis ID: 013274

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440------
Protein Sequence
MWKEIGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVDAGPMQDQDNWSD
Secondary Structure (PSIPRED)
cccccccccccEEEcEEccccccEEEEEcccccccEEEcccccccEEEEEEccccccEEEEEcccccEEEEEcccccEEcccccccEEEEEEEEcccccccccccEEEEEEccccccEEEEEEccccEEEEEcccccEEEEEccccEEEEEEEEEccccccEEEEEcccccEEEEEcccccEEEEcccccccEEEEEEcccccEEEEEEEccccEEEEEccccEEEEEcccccccEEEEcccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEcccccEEccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEcccccccccccEEEEEcccccEEEEEcccEEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEccccccccccEEccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEccccccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEccccccEEEEEccccEEEEEEcccccEcccccccccccccccEEEEEEccccccEEEEEEccccccEEEEEccccEEEEEEcccccEEEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEccccccEEEEcccccEEEEEcccccEEEEEcccccEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEccccccEEEEEEcccccEEEEEccccEEEEEEccccccEEEEEEEcccccccEEEEEEcccccEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEccccccccccEEEEccccccccc
Coil and Loop (DISEMBL)
mwkeiggreagqirpnsfanrvkshrlstlqlsnykeivsphkgsinsLQVDLTEERyllsgasdssvavydvqratdyeggghiakhrSVFVVdkqhehghkyaissaiwypvdtglfvtgsydHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIasgaisqtlsghrdgimtvewsTSSEWILVtggcdgairfWDIRRAGCFRVLDqsqsqlgrrppllkRKVSISKslsagqnssvkprapqkrsangngvrqssvgripakgsvrqrlhpgmlssqdRATAHYGAVTGLKVTEDGMYLlsagsdsrirlwdvesgrntlVNFETVrlqtskpiqlattqdpavvfVPCMTAVKAfdiwsgktcltfrghyeyvncccfssqdqelytggndrqilvwcpsrhisdgvdagpmqdqdnwsd
Flexible Loop (DISEMBL)
mwkeiggreagqirpnsfanRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLsgasdssvavYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGaisqtlsghrDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLdqsqsqlgrrppllkRKVSISkslsagqnssvkprapqkrsangngvrqssvgripakgsvrqrlhpgmlssqdrATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFetvrlqtskpiqlattqdpaVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRhisdgvdagpmqdqdnwsd
Low Complexity Region (SEG)
MWKEIGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVDAGPMQDQDNWSD
Disordered region (IsUnstruct)
**********************************YKEIV******INSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLD****************************************************************************AHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI*****************
Disordered Region (DISOPRED)
MW*****REAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVDAGPMQDQ**W**
Disordered Region (DISEMBL)
MWKEIGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISK***************************SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVDAGPMQDQDNWSD
Disordered Region (DISPRO)
MWKEIGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVDAGPMQD******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWKEIGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVDAGPMQDQDNWSD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	446	2.2.26 [Sep-21-2011]
Q5BIM8	397	DNA excision repair prote	yes	no	0.809	0.909	0.312	4e-58
Q8CFD5	397	DNA excision repair prote	yes	no	0.847	0.952	0.312	5e-58
Q13216	396	DNA excision repair prote	yes	no	0.809	0.911	0.305	2e-56
Q9USR0	404	DNA excision repair prote	yes	no	0.491	0.542	0.344	3e-33
Q8YRI1	1526	Uncharacterized WD repeat	yes	no	0.612	0.178	0.262	1e-17
O74855	502	Ribosome assembly protein	no	no	0.775	0.689	0.235	8e-16
P25382	515	Ribosome assembly protein	yes	no	0.744	0.644	0.231	1e-14
Q00808	1356	Vegetative incompatibilit	no	no	0.784	0.258	0.249	3e-13
B4JPT9	419	Ribosome biogenesis prote	N/A	no	0.421	0.448	0.275	4e-13
A7TNS8	669	CCR4-associated factor 4	N/A	no	0.383	0.255	0.263	8e-13

>sp|Q5BIM8|ERCC8_BOVIN DNA excision repair protein ERCC-8 OS=Bos taurus GN=ERCC8 PE=2 SV=1

 Score =  225 bits (574), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 134/429 (31%), Positives = 204/429 (47%), Gaps = 68/429 (15%)

Query: 1   MWKEIGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLL 60
           M   +  R+AG   P        + R+  L+L+  +++   H   +N+L ++  E RY+L
Sbjct: 1   MLGFLSARQAGLEDPLRLRRAESTRRVLGLELNKDRDVERIHCSGVNTLDIEPVEGRYML 60

Query: 61  SGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120
           SG SD  + +YD++ ++           ++V  V + H   HKY++ +  WYP DTG+F 
Sbjct: 61  SGGSDGVIVLYDLENSSRQP----YYTCKAVCSVGRSHPDVHKYSVETVQWYPHDTGMFT 116

Query: 121 TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG 180
           + S+D  +KVWDTN  ++   F     VY   MSP+A  H L+A GT   +V+LCD+ SG
Sbjct: 117 SSSFDKTLKVWDTNTLQIADVFNFEETVYSHHMSPVATKHCLVAVGTRGPKVQLCDLKSG 176

Query: 181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA-GCFRVLDQSQSQLGRR 239
           + S  L GHR  I+ V WS   E+IL T   D   + WD+RRA GC   LDQ        
Sbjct: 177 SCSHILQGHRQEILAVSWSPRYEYILATASADSRAKLWDVRRASGCLITLDQHNG----- 231

Query: 240 PPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGML 299
                +K   ++S +   N  V            NG+  +S G                 
Sbjct: 232 -----KKSQAAESANTAHNGKV------------NGLCFTSDG----------------- 257

Query: 300 SSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPI 359
                                 ++LL+ G+D+R+RLW+  +G NTLVN+  V   + K +
Sbjct: 258 ----------------------LHLLTVGTDNRMRLWNSSNGENTLVNYGKVYNDSRKGL 295

Query: 360 QLATTQ--DPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND 417
           +   +       VFVP  + +  + I+SG+     +GHY+ V+CC F S  QELY+G  D
Sbjct: 296 KFTVSSGCSSEFVFVPYGSTIAVYTIYSGEQITMLKGHYKSVDCCVFQSNFQELYSGSRD 355

Query: 418 RQILVWCPS 426
             IL W PS
Sbjct: 356 CNILAWVPS 364

Substrate-recognition component of the CSA complex, a DCX (DDB1-CUL4-X-box) E3 ubiquitin-protein ligase complex, involved in transcription-coupled nucleotide excision repair. The CSA complex (DCX(ERCC8) complex) promotes the ubiquitination and subsequent proteasomal degradation of ERCC6 in a UV-dependent manner; ERCC6 degradation is essential for the recovery of RNA synthesis after transcription-coupled repair. It is required for the recruitment of XAB2, HMGN1 and TCEA1/TFIIS to a transcription-coupled repair complex which removes RNA polymerase II-blocking lesions from the transcribed strand of active genes.
Bos taurus (taxid: 9913)

>sp|Q8CFD5|ERCC8_MOUSE DNA excision repair protein ERCC-8 OS=Mus musculus GN=Ercc8 PE=2 SV=2

 Score =  225 bits (574), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 140/448 (31%), Positives = 210/448 (46%), Gaps = 70/448 (15%)

Query: 1   MWKEIGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLL 60
           M   +  R++G   P        + R+  L+L+  +++   H   +N+L ++  E RY+L
Sbjct: 1   MLSFLSARQSGLEDPLRLRRAQSTRRVLGLELNKDRDVERIHGSGVNTLDIEPVEGRYML 60

Query: 61  SGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120
           SG SD  V +YD++ A+      H    ++V  V + H   HKY++ +  WYP DTG+F 
Sbjct: 61  SGGSDGVVVLYDLENASRQP---HYTC-KAVCSVGRSHPDVHKYSVETVQWYPHDTGMFT 116

Query: 121 TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG 180
           + S+D  +KVWDTN  +    F     VY   MSP A  H L+A GT   +V+LCD+ SG
Sbjct: 117 SSSFDKTLKVWDTNTLQAADVFNFEETVYSHHMSPAATKHCLVAVGTRGPKVQLCDLKSG 176

Query: 181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA-GCFRVLDQSQSQLGRR 239
           + S  L GHR  I+ V WS   ++IL T   D  ++ WD+RRA GC   LDQ        
Sbjct: 177 SCSHILQGHRQEILAVSWSPRHDYILATASADSRVKLWDVRRASGCLLTLDQHNG----- 231

Query: 240 PPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGML 299
                +K   ++S +   N  V            NG+  +S G                 
Sbjct: 232 -----KKSQAAESANTAHNGKV------------NGLCFTSDG----------------- 257

Query: 300 SSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPI 359
                                 ++LL+ G+D+R+RLW+  SG NTLVN+  V   + K +
Sbjct: 258 ----------------------LHLLTIGTDNRMRLWNSSSGDNTLVNYGKVCNDSRKGL 295

Query: 360 QLATT--QDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND 417
           Q A +       VFVP  + +  + + SG+     +GHY+ V+CC F    QELY+G  D
Sbjct: 296 QFAVSCGCSSEFVFVPHGSTIAVYAVHSGERLAMLKGHYKSVDCCVFQPNFQELYSGSRD 355

Query: 418 RQILVWCPSRH--ISDGVDAGPMQDQDN 443
             IL W P  +  + D  D  P + Q N
Sbjct: 356 CNILAWVPPSYEPVPDDDDEAPAKSQLN 383

Involved in transcription-coupled nucleotide excision repair (By similarity). It is required for the recruitment of XAB2, HMGN1 and TCEA1/TFIIS to a transcription-coupled repair complex which removes RNA polymerase II-blocking lesions from the transcribed strand of active genes (By similarity). It is the substrate-recognition component of the CSA complex (DCX(ERCC8) complex) which promotes the ubiquitination and subsequent proteasomal degradation of ERCC6 in a UV-dependent manner; ERCC6 degradation is essential for the recovery of RNA synthesis after transcription-coupled repair.

Mus musculus (taxid: 10090)

>sp|Q13216|ERCC8_HUMAN DNA excision repair protein ERCC-8 OS=Homo sapiens GN=ERCC8 PE=1 SV=1

 Score =  220 bits (561), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 131/429 (30%), Positives = 201/429 (46%), Gaps = 68/429 (15%)

Query: 1   MWKEIGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLL 60
           M   +  R+ G   P        + R+  L+L+  +++   H G IN+L ++  E RY+L
Sbjct: 1   MLGFLSARQTGLEDPLRLRRAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYML 60

Query: 61  SGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120
           SG SD  + +YD++ ++           ++V  + + H   H+Y++ +  WYP DTG+F 
Sbjct: 61  SGGSDGVIVLYDLENSSRQS----YYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFT 116

Query: 121 TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG 180
           + S+D  +KVWDTN  +    F     VY   MSP++  H L+A GT   +V+LCD+ SG
Sbjct: 117 SSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG 176

Query: 181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA-GCFRVLDQSQSQLGRR 239
           + S  L GHR  I+ V WS   ++IL T   D  ++ WD+RRA GC   LDQ        
Sbjct: 177 SCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHN------ 230

Query: 240 PPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGML 299
                           G+ S     A    +   NG+  +S G           LH    
Sbjct: 231 ----------------GKKSQAVESANTAHNGKVNGLCFTSDG-----------LH---- 259

Query: 300 SSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPI 359
                                   LL+ G+D+R+RLW+  +G NTLVN+  V   + K +
Sbjct: 260 ------------------------LLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGL 295

Query: 360 QLATT--QDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND 417
           +   +       VFVP  + +  + ++SG+     +GHY+ V+CC F S  QELY+G  D
Sbjct: 296 KFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRD 355

Query: 418 RQILVWCPS 426
             IL W PS
Sbjct: 356 CNILAWVPS 364

Substrate-recognition component of the CSA complex, a DCX (DDB1-CUL4-X-box) E3 ubiquitin-protein ligase complex, involved in transcription-coupled nucleotide excision repair. The CSA complex (DCX(ERCC8) complex) promotes the ubiquitination and subsequent proteasomal degradation of ERCC6 in a UV-dependent manner; ERCC6 degradation is essential for the recovery of RNA synthesis after transcription-coupled repair. It is required for the recruitment of XAB2, HMGN1 and TCEA1/TFIIS to a transcription-coupled repair complex which removes RNA polymerase II-blocking lesions from the transcribed strand of active genes.

Homo sapiens (taxid: 9606)

>sp|Q9USR0|CKN1_SCHPO DNA excision repair protein ckn1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ckn1 PE=1 SV=1

 Score =  143 bits (361), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 79/229 (34%), Positives = 122/229 (53%), Gaps = 10/229 (4%)

Query: 7   GREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHK----GSINSLQVDLTEERYLLSG 62
            RE GQ   +SF  ++  HRL  L L+   +I   H     GS+N+L +D T  + ++SG
Sbjct: 7   AREWGQEPNSSFRRQLLQHRLQRLALNPDVKIKRRHGAGILGSVNALSIDNTIHQLMVSG 66

Query: 63  ASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG 122
            ++SS+ V+D+Q     E    I    +           HK+ I+   W+P D G+F + 
Sbjct: 67  GANSSINVWDLQNIDQKEDEDLILDTLNAVPA----RTSHKFGITDLHWFPFDNGIFTSS 122

Query: 123 SYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI 182
           S+DH +KVWD +  +    F M   +Y  A SP+A SH LIA       +RLCD+ SG+ 
Sbjct: 123 SFDHTLKVWDVSTLQEAYTFTMEDMIYSHAWSPIA-SHCLIATAYRSSSIRLCDMQSGSY 181

Query: 183 SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR-AGCFRVLD 230
           + +LSGH   ++ V+W   +E++L +G  DG  R WDIR+ +  F  +D
Sbjct: 182 THSLSGHTGNVLAVDWCPKNEFVLASGSADGTCRLWDIRKVSSSFACMD 230

Adapter protein for ddb1/cullin 4 ubiquitin ligases involved in transcription-coupled nucleotide excision repair.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 91.7 bits (226), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 134/332 (40%), Gaps = 59/332 (17%)

Query: 101  GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASH 160
            GH   ++S + +  D  +  +GS D  V++WD +  + +  FK  G   R      + + 
Sbjct: 904  GHNSWVNS-VGFSQDGKMLASGSDDQTVRLWDISSGQCLKTFK--GHTSRVRSVVFSPNS 960

Query: 161  MLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDI 220
            +++A+G+ D  VRL DI+SG       GH   + +V ++     +L TG  D  +R WDI
Sbjct: 961  LMLASGSSDQTVRLWDISSGECLYIFQGHTGWVYSVAFNLDGS-MLATGSGDQTVRLWDI 1019

Query: 221  RRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSS 280
              + CF +                           G  S V+             V  SS
Sbjct: 1020 SSSQCFYIFQ-------------------------GHTSCVR------------SVVFSS 1042

Query: 281  VGRIPAKGSVRQRLHPGMLSSQD---RATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWD 337
             G + A GS  Q +    +SS +       H   V  +  + DG  L S G D  +RLWD
Sbjct: 1043 DGAMLASGSDDQTVRLWDISSGNCLYTLQGHTSCVRSVVFSPDGAMLASGGDDQIVRLWD 1102

Query: 338  VESGRNTLVNFET----VRLQTSKP--IQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLT 391
            + SG N L   +     VR     P  + LA      +        V+ +DI S K   T
Sbjct: 1103 ISSG-NCLYTLQGYTSWVRFLVFSPNGVTLANGSSDQI--------VRLWDISSKKCLYT 1153

Query: 392  FRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 423
             +GH  +VN   FS     L +G  D+ + +W
Sbjct: 1154 LQGHTNWVNAVAFSPDGATLASGSGDQTVRLW 1185

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|O74855|NLE1_SCHPO Ribosome assembly protein C18.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC18.05c PE=3 SV=1

 Score = 85.5 bits (210), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 95/404 (23%), Positives = 164/404 (40%), Gaps = 58/404 (14%)

Query: 42  HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG 101
           H G+I S Q   +    L++G+ D +  ++D    T       IA  +           G
Sbjct: 133 HDGTIISAQFSPSTSSRLVTGSGDFTARLWDCDTQTP------IATMK-----------G 175

Query: 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAAS-- 159
           H   +S   W P D  +  TGS D+ ++ WD      +      G   R    P+ A   
Sbjct: 176 HTNWVSCVAWAP-DASIIATGSMDNTIRFWDPKKGSPI------GDALRRHTKPIMALCW 228

Query: 160 ---HM-------LIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTG 209
              H+       L+A+G++D  VR+ ++    +  TLSGH   I  V W     WI  + 
Sbjct: 229 QPLHLAPDSGPYLLASGSKDNTVRIWNVKLRTLLFTLSGHTAPITCVRWG-GQNWIY-SS 286

Query: 210 GCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAG--QNSSVKPRA-- 265
             D  IR WD +   C  +L    +++          +S    L +G   ++  KP++  
Sbjct: 287 SYDKTIRIWDAKDGKCLHILKGHAARVNHL------SLSTEHVLRSGAYDHTDFKPKSFS 340

Query: 266 PQKRSANGN---GVRQSSVGRIPAKGSVRQRLHPGMLSSQD--RATAHYGAVTGLKVTED 320
            ++R A       ++QS    + A   ++  L     S++   +   H   V     + D
Sbjct: 341 DERRKAKERYEACLKQSGERLVSASDDLQLILWDPQKSTKPITKMHGHQKVVNHASFSPD 400

Query: 321 GMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVK 379
           G  + +A  DS +RLWD ++G+       T+R   +   Q A + D  ++      T +K
Sbjct: 401 GRCIATASFDSSVRLWDGKTGKF----LATLRGHVAAVYQCAWSTDSRLLVSSSQDTTLK 456

Query: 380 AFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 423
            +D+ S K      GH + V    +S   Q + +GG D+ + +W
Sbjct: 457 VWDVRSKKMKFDLPGHEDQVFAVDWSPDGQRVASGGADKAVRIW 500

Involved in processing and efficient intra-nuclear transport or pre-60S ribosomal subunits.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P25382|NLE1_YEAST Ribosome assembly protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSA4 PE=1 SV=3

 Score = 81.3 bits (199), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 90/388 (23%), Positives = 162/388 (41%), Gaps = 56/388 (14%)

Query: 59  LLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118
           +++GA D++  ++D     D +   H  K             GH   +    W P D  +
Sbjct: 159 MVTGAGDNTARIWDC----DTQTPMHTLK-------------GHYNWVLCVSWSP-DGEV 200

Query: 119 FVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMS--PL----AASHMLIAAGTEDVQV 172
             TGS D+ +++WD    + + +       + T++S  P+      S   +A+ ++D  +
Sbjct: 201 IATGSMDNTIRLWDPKSGQCLGDALRGHSKWITSLSWEPIHLVKPGSKPRLASSSKDGTI 260

Query: 173 RLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG-CFRVLDQ 231
           ++ D  S     T+SGH + +  V+W    + +L +G  D  +R WDI   G C  +L  
Sbjct: 261 KIWDTVSRVCQYTMSGHTNSVSCVKWG--GQGLLYSGSHDRTVRVWDINSQGRCINILKS 318

Query: 232 SQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAP---QKRS---------ANGNGVRQS 279
               +      L      +  + A  ++  KP  P   QK++          NGN    S
Sbjct: 319 HAHWVNH----LSLSTDYALRIGAFDHTGKKPSTPEEAQKKALENYEKICKKNGN----S 370

Query: 280 SVGRIPAKGSVRQRLHPGMLSSQD--RATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWD 337
               + A       L   + S++   R T H   V  +  + DG Y++SA  D+ I+LWD
Sbjct: 371 EEMMVTASDDYTMFLWNPLKSTKPIARMTGHQKLVNHVAFSPDGRYIVSASFDNSIKLWD 430

Query: 338 VESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAFDIWSGKTCLTFRGH 395
              G+       T R   +   Q+A + D   + V C   T +K +D+ + K  +   GH
Sbjct: 431 GRDGK----FISTFRGHVASVYQVAWSSD-CRLLVSCSKDTTLKVWDVRTRKLSVDLPGH 485

Query: 396 YEYVNCCCFSSQDQELYTGGNDRQILVW 423
            + V    +S   + + +GG D+ + +W
Sbjct: 486 KDEVYTVDWSVDGKRVCSGGKDKMVRLW 513

Involved in processing and efficient intra-nuclear transport or pre-60S ribosomal subunits. Forms a complex with REA1 which is essential for ATP-dependent dissociation of a group of nonribosomal factors from the pre-60S particle.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score = 76.6 bits (187), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 154/397 (38%), Gaps = 47/397 (11%)

Query: 42   HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG 101
            H GS+ S+      ER + SG+ D ++ ++D    T                   Q   G
Sbjct: 882  HGGSVWSVAFSPDRER-VASGSDDKTIKIWDAASGTC-----------------TQTLEG 923

Query: 102  HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK-VYRTAMSPLAASH 160
            H   + S  + P D     +GS DH +K+WD          +  G  V   A SP     
Sbjct: 924  HGGRVQSVAFSP-DGQRVASGSDDHTIKIWDAASGTCTQTLEGHGSSVLSVAFSP---DG 979

Query: 161  MLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDI 220
              +A+G+ D  +++ D ASG  +QTL GH   + +V +S   + +  +G  D  I+ WD 
Sbjct: 980  QRVASGSGDKTIKIWDTASGTCTQTLEGHGGSVWSVAFSPDGQRV-ASGSDDKTIKIWDT 1038

Query: 221  RRAGCFRVLDQSQS--QLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQ 278
                C + L+      Q     P  +R  S S   +     +V     Q    +G+ V  
Sbjct: 1039 ASGTCTQTLEGHGGWVQSVVFSPDGQRVASGSDDHTIKIWDAVSGTCTQTLEGHGDSVWS 1098

Query: 279  ---SSVGRIPAKGSVRQRLHPGMLSSQDRATA--------HYGAVTGLKVTEDGMYLLSA 327
               S  G+  A GS+      G +   D A+         H G V  +  + DG  + S 
Sbjct: 1099 VAFSPDGQRVASGSI-----DGTIKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQRVASG 1153

Query: 328  GSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQD-PAVVFVPCMTAVKAFDIWSG 386
              D  I++WD  SG  T    +T+         +A + D   V        +K +D  SG
Sbjct: 1154 SIDGTIKIWDAASGTCT----QTLEGHGGWVQSVAFSPDGQRVASGSSDKTIKIWDTASG 1209

Query: 387  KTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 423
                T  GH  +V    FS   Q + +G +D  I +W
Sbjct: 1210 TCTQTLEGHGGWVQSVAFSPDGQRVASGSSDNTIKIW 1246

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|B4JPT9|WDR12_DROGR Ribosome biogenesis protein WDR12 homolog OS=Drosophila grimshawi GN=GH13339 PE=3 SV=1

 Score = 76.3 bits (186), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 93/200 (46%), Gaps = 12/200 (6%)

Query: 42  HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG 101
           H+ S++S+ V    +R+  +G+ D+ + ++  +     EG    AK   V    K    G
Sbjct: 192 HERSVDSVAVSPDAQRFA-TGSWDTMLKLWSAELEDAVEGSAKRAKESGV-RTPKMTLQG 249

Query: 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHM 161
           H+ +IS+  W  +D    +TGS+DH +KVWD N   +         ++    S L   + 
Sbjct: 250 HRESISAVQW--MDGTTLLTGSWDHTLKVWDLNLEGIKTEISTNKSIFDANFSKL---NR 304

Query: 162 LIAAGTEDVQVRLCDIASG---AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFW 218
           LI   + D  +RL D  +     +  T  GH   + TV WST+ E++ V+G  D   + W
Sbjct: 305 LIVTASADKNLRLYDPRTNQGSVVRNTYLGHNAWVQTVMWSTTEEFLFVSGSYDNQNKLW 364

Query: 219 DIR--RAGCFRVLDQSQSQL 236
           D R  +A  + +L   +  L
Sbjct: 365 DCRSPKAPLYDLLGHGEKVL 384

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Drosophila grimshawi (taxid: 7222)

>sp|A7TNS8|CAF4_VANPO CCR4-associated factor 4 homolog OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=CAF4 PE=3 SV=1

 Score = 75.5 bits (184), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 96/209 (45%), Gaps = 38/209 (18%)

Query: 39  VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGG-----GHIAKHRSVFV 93
            + H  +IN +Q+D T+++ ++SG  DS V ++D+++  DY         +  +   +F 
Sbjct: 392 FNAHLSTINCMQLD-TQQQIIISGGRDSLVRLWDIKKFQDYSTNYNDIENYYEETNCIFE 450

Query: 94  VDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKV----- 148
            D      H   ISS  +   D    +TGS D  +K WD    + V  F +   +     
Sbjct: 451 CD-----SHSDEISSISY---DNFNLLTGSQDKTIKHWDLITGKCVQTFDVSFYLNNSPP 502

Query: 149 YRTAMSPLAASHML----------------IAAGTEDVQVRLCDIASGAISQTLSGHRDG 192
           +    SP   ++                  +A+GT+D  +RL D+ SG + + L GH D 
Sbjct: 503 FENKFSPTKKNYFAHSEAPTIGSLQCFESALASGTKDGLIRLWDLRSGKVIRILEGHTDA 562

Query: 193 IMTVEWSTSSEWILVTGGCDGAIRFWDIR 221
           I ++++  ++   L+TG  D  IR WD+R
Sbjct: 563 ITSLKFDMTN---LITGSLDKNIRIWDMR 588

Involved in mitochondrial fission. Has a partially redundant function to MDV1 in acting as an adapter protein required to form mitochondrial fission complexes. Formation of these complexes is required to promote constriction and fission of the mitochondrial compartment at a late step in mitochondrial division.

Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) (taxid: 436907)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	446
224127270	449	predicted protein [Populus trichocarpa]	0.997	0.991	0.793	0.0
255538060	479	WD-repeat protein, putative [Ricinus com	0.995	0.926	0.797	0.0
302142198	458	unnamed protein product [Vitis vinifera]	1.0	0.973	0.770	0.0
225458838	450	PREDICTED: DNA excision repair protein E	0.984	0.975	0.757	0.0
449450283	446	PREDICTED: DNA excision repair protein E	0.993	0.993	0.746	0.0
356510566	460	PREDICTED: DNA excision repair protein E	0.995	0.965	0.738	0.0
356514489	466	PREDICTED: LOW QUALITY PROTEIN: DNA exci	0.997	0.954	0.704	0.0
22329825	450	transducin/WD-40 repeat-containing prote	0.993	0.984	0.695	0.0
297851220	450	ATCSA-1 [Arabidopsis lyrata subsp. lyrat	1.0	0.991	0.695	0.0
79318736	451	transducin/WD-40 repeat-containing prote	0.993	0.982	0.693	0.0

>gi|224127270|ref|XP_002320030.1| predicted protein [Populus trichocarpa] gi|222860803|gb|EEE98345.1| predicted protein [Populus trichocarpa]

 Score =  758 bits (1956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/450 (79%), Positives = 402/450 (89%), Gaps = 5/450 (1%)

Query: 1   MWKEIGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLL 60
           MW+EI  REAG+ RPNSF NRV S R+S LQLSNYK++VSPH+GSINSLQVDLTE RYLL
Sbjct: 1   MWREIRDREAGKTRPNSFKNRVSSSRISNLQLSNYKDVVSPHRGSINSLQVDLTEGRYLL 60

Query: 61  SGASDSSVAVYDVQRATDYEGGGH---IAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117
           SGASD+S +V+D+Q ATD+EGGG    IAKH+S+  +DKQH++GHK+AISSAIWYP+DTG
Sbjct: 61  SGASDASASVFDIQHATDFEGGGEGALIAKHKSLITIDKQHQNGHKFAISSAIWYPIDTG 120

Query: 118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI 177
           LFVTGSYDHY+KVWDTN T++V+NFK+PGKVYRTAMSPLA SHMLIAAGTEDVQVRLCDI
Sbjct: 121 LFVTGSYDHYIKVWDTNSTQMVINFKLPGKVYRTAMSPLATSHMLIAAGTEDVQVRLCDI 180

Query: 178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLG 237
           ASGA + TLSGHRDG+MTVEWSTSSEW+LVTGGCDGAIRFWDIRRAGCF VLDQSQSQLG
Sbjct: 181 ASGAFAHTLSGHRDGVMTVEWSTSSEWVLVTGGCDGAIRFWDIRRAGCFLVLDQSQSQLG 240

Query: 238 RRPPLLKRK-VSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHP 296
           RRPP+L R  VS SK+LS GQN   KPR PQK+S  GNG++ S +G++PAKG ++QRLHP
Sbjct: 241 RRPPVLARSAVSTSKALSKGQNLLGKPRMPQKKSGGGNGIKHSPLGQVPAKGYLKQRLHP 300

Query: 297 GMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTS 356
           GMLSSQDRATAHYGAVTGLK+TEDGMYLLSAGSDSRIRLWDVESGRNTLVNFET RLQTS
Sbjct: 301 GMLSSQDRATAHYGAVTGLKITEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETARLQTS 360

Query: 357 KPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGN 416
           KPIQLAT QD  +VFVPCMT+VKAFD+WSGKT +TFRGHYE+VNCC FSSQDQELYTGGN
Sbjct: 361 KPIQLATAQDSNLVFVPCMTSVKAFDVWSGKTYVTFRGHYEHVNCCWFSSQDQELYTGGN 420

Query: 417 DRQILVWCPSRHISDGVDAGPMQDQDNWSD 446
           DRQILVW P+R I +  DA P +DQDNWSD
Sbjct: 421 DRQILVWSPARLIPN-EDASPAEDQDNWSD 449

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538060|ref|XP_002510095.1| WD-repeat protein, putative [Ricinus communis] gi|223550796|gb|EEF52282.1| WD-repeat protein, putative [Ricinus communis]

 Score =  757 bits (1954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/449 (79%), Positives = 400/449 (89%), Gaps = 5/449 (1%)

Query: 1   MWKEIGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLL 60
           MW+EI  RE+G+ RPNSF NRVKS+R++ LQLSNYKEIVSPH+G+INSLQVDLTE RYL+
Sbjct: 33  MWREIRDRESGKTRPNSFTNRVKSNRIANLQLSNYKEIVSPHRGAINSLQVDLTEGRYLI 92

Query: 61  SGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120
           SGASD+S AV+DVQRATD+E  G IAKH+ +F+VDKQHE  HKYA+SSA WYPVDTGLFV
Sbjct: 93  SGASDASAAVFDVQRATDFEDEGVIAKHKCLFIVDKQHETAHKYAVSSATWYPVDTGLFV 152

Query: 121 TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG 180
           TGSYDHY+KVWDTN T+VV+NFK+PGKVYRTAMSPLA SHMLIAAGTEDVQVRLCDIASG
Sbjct: 153 TGSYDHYIKVWDTNTTQVVVNFKLPGKVYRTAMSPLATSHMLIAAGTEDVQVRLCDIASG 212

Query: 181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRP 240
           A + TLSGHRDG+MTVEWSTSSEW+LVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRP
Sbjct: 213 AFAHTLSGHRDGVMTVEWSTSSEWVLVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRP 272

Query: 241 PLLKRKVS---ISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPG 297
           P+L R V+    S+SL AGQ+ S K RAP K+SA GNG +QS +GR P KG VRQRLHPG
Sbjct: 273 PVLPRSVANKVSSRSLLAGQHLSSKSRAPLKKSATGNGKKQSPLGRTPVKGPVRQRLHPG 332

Query: 298 MLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK 357
           MLS QDRATAHYGAVTGLK+TEDGMYLLSAGSDSR+RLWD+ESG NTLVNFETVRLQTSK
Sbjct: 333 MLSIQDRATAHYGAVTGLKITEDGMYLLSAGSDSRMRLWDLESGCNTLVNFETVRLQTSK 392

Query: 358 PIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND 417
            IQLATTQD ++VFVPCMTAVKAFD+WSG T +TFRGHYEYVNCC +SSQDQE+YTGGND
Sbjct: 393 AIQLATTQDSSLVFVPCMTAVKAFDLWSGMTSMTFRGHYEYVNCCWYSSQDQEIYTGGND 452

Query: 418 RQILVWCPSRHISDGVDAGPMQDQDNWSD 446
           RQILVWCP R I   ++ GP +DQDNWSD
Sbjct: 453 RQILVWCPPRLID--METGPAEDQDNWSD 479

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142198|emb|CBI19401.3| unnamed protein product [Vitis vinifera]

 Score =  741 bits (1913), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/458 (77%), Positives = 400/458 (87%), Gaps = 12/458 (2%)

Query: 1   MWKEIGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLL 60
           MWK++G REAG++RP SF+NR+ S R+++LQLSNYKEIVSPH+G++NSLQVDLTE RYLL
Sbjct: 1   MWKDLGDREAGKLRPYSFSNRITSDRIASLQLSNYKEIVSPHRGAVNSLQVDLTEGRYLL 60

Query: 61  SGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120
           SGASD+S AVYD+QRAT+YEGG  +AKH+S+FVVDKQHEHGHKYAISSAIWYP+DTGLF+
Sbjct: 61  SGASDASAAVYDIQRATEYEGGSLVAKHKSIFVVDKQHEHGHKYAISSAIWYPIDTGLFI 120

Query: 121 TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG 180
           TGSYDHY+ VWDTN T+VV+NFKMPGK+YRTAMS LA +HMLIAAGTEDVQVRLCDIASG
Sbjct: 121 TGSYDHYINVWDTNTTQVVVNFKMPGKIYRTAMSSLATAHMLIAAGTEDVQVRLCDIASG 180

Query: 181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRP 240
           A + TLSGHRDG+MTVEWSTSSEW+LVTGGCDGAIRFWDIRRAGCF VLDQSQSQLGRRP
Sbjct: 181 AFAHTLSGHRDGVMTVEWSTSSEWVLVTGGCDGAIRFWDIRRAGCFLVLDQSQSQLGRRP 240

Query: 241 PLLK----RKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIP--AKGSVRQRL 294
           PLL+     K  +SKS  A Q+ +V+ RAPQ++ A GNG +QS+ GR    AKG VRQRL
Sbjct: 241 PLLECSTANKAPMSKSFPASQSVNVRSRAPQRKFAYGNGSKQSATGRTSSQAKGLVRQRL 300

Query: 295 HPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQ 354
           HPGMLSSQDRAT+HYGAVTGLKVT+DGMYLLSAGSDSR+RLWD+ SG NTLVNFETVRLQ
Sbjct: 301 HPGMLSSQDRATSHYGAVTGLKVTDDGMYLLSAGSDSRLRLWDIMSGCNTLVNFETVRLQ 360

Query: 355 TSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTG 414
           TSK +QLA T D A+VFVPCMTAVKAFD+WSGKT +TFRGHYEYVNCC  S QDQELYTG
Sbjct: 361 TSKAMQLAITNDSALVFVPCMTAVKAFDVWSGKTAMTFRGHYEYVNCCWLSLQDQELYTG 420

Query: 415 GNDRQILVWCPSRHISDGVDAG----PM--QDQDNWSD 446
           GNDRQILVW PSR   D +D G    P+  QDQDNWSD
Sbjct: 421 GNDRQILVWSPSRLNFDEMDHGSREEPIHAQDQDNWSD 458

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458838|ref|XP_002285324.1| PREDICTED: DNA excision repair protein ERCC-8-like [Vitis vinifera]

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/457 (75%), Positives = 389/457 (85%), Gaps = 18/457 (3%)

Query: 1   MWKEIGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLL 60
           MWK++G REAG++RP SF+NR+ S R+++LQLSNYKEIVSPH+G++NSLQVDLTE RYLL
Sbjct: 1   MWKDLGDREAGKLRPYSFSNRITSDRIASLQLSNYKEIVSPHRGAVNSLQVDLTEGRYLL 60

Query: 61  SGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120
           SGASD+S AVYD+QRAT+YEGG  +AKH+S+FVVDKQHEHGHKYAISSAIWYP+DTGLF+
Sbjct: 61  SGASDASAAVYDIQRATEYEGGSLVAKHKSIFVVDKQHEHGHKYAISSAIWYPIDTGLFI 120

Query: 121 TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG 180
           TGSYDHY+ VWDTN T+VV+NFKMPGK+YRTAMS LA +HMLIAAGTEDVQVRLCDIASG
Sbjct: 121 TGSYDHYINVWDTNTTQVVVNFKMPGKIYRTAMSSLATAHMLIAAGTEDVQVRLCDIASG 180

Query: 181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRP 240
           A + TLSGHRDG+MTVEWSTSSEW+LVTGGCDGAIRFWDIRRAGCF VLDQSQSQLGRRP
Sbjct: 181 AFAHTLSGHRDGVMTVEWSTSSEWVLVTGGCDGAIRFWDIRRAGCFLVLDQSQSQLGRRP 240

Query: 241 PLLK----RKVSISK-SLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLH 295
           PLL+     KVS  K ++S G    +     +  SA G   R SS     AKG VRQRLH
Sbjct: 241 PLLECSTANKVSFLKQNVSMGMEVGLHVLHSKTGSATG---RTSS----QAKGLVRQRLH 293

Query: 296 PGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT 355
           PGMLSSQDRAT+HYGAVTGLKVT+DGMYLLSAGSDSR+RLWD+ SG NTLVNFETVRLQT
Sbjct: 294 PGMLSSQDRATSHYGAVTGLKVTDDGMYLLSAGSDSRLRLWDIMSGCNTLVNFETVRLQT 353

Query: 356 SKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGG 415
           SK +QLA T D A+VFVPCMTAVKAFD+WSGKT +TFRGHYEYVNCC  S QDQELYTGG
Sbjct: 354 SKAMQLAITNDSALVFVPCMTAVKAFDVWSGKTAMTFRGHYEYVNCCWLSLQDQELYTGG 413

Query: 416 NDRQILVWCPSRHISDGVDAG----PM--QDQDNWSD 446
           NDRQILVW PSR   D +D G    P+  QDQDNWSD
Sbjct: 414 NDRQILVWSPSRLNFDEMDHGSREEPIHAQDQDNWSD 450

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450283|ref|XP_004142893.1| PREDICTED: DNA excision repair protein ERCC-8-like [Cucumis sativus] gi|449482714|ref|XP_004156381.1| PREDICTED: DNA excision repair protein ERCC-8-like [Cucumis sativus]

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/449 (74%), Positives = 386/449 (85%), Gaps = 6/449 (1%)

Query: 1   MWKEIGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLL 60
           MWK I  REAG++RPNSFANRVKS R S+LQLSN+K+IVSPH+GS+NSLQVDLTE RYLL
Sbjct: 1   MWKNIRDREAGKLRPNSFANRVKSDRTSSLQLSNHKDIVSPHRGSVNSLQVDLTEGRYLL 60

Query: 61  SGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120
           SGASD+S AV+D+QRAT  EG   IAKH+ +F VDKQHEHGHKYAISSAIWYPVDTGLFV
Sbjct: 61  SGASDASAAVFDIQRATHSEG--LIAKHQCIFAVDKQHEHGHKYAISSAIWYPVDTGLFV 118

Query: 121 TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG 180
           TGS+DH++ VWDTN T+VV+NFK+PGKVYRTAMS LA SHMLIAAGTEDVQVRLCDI+SG
Sbjct: 119 TGSFDHHINVWDTNTTQVVVNFKLPGKVYRTAMSSLATSHMLIAAGTEDVQVRLCDISSG 178

Query: 181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRP 240
           A S TLSGHRDG+M+VEWS SSEW+L+TGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRP
Sbjct: 179 AFSHTLSGHRDGVMSVEWSASSEWVLITGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRP 238

Query: 241 PL---LKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPG 297
           P+      K+S SKSL A Q S++K R P K+  NGN  + SS G++PAKGS RQRLHPG
Sbjct: 239 PISGWTANKLSTSKSLLASQGSNMKSRIPHKKLTNGNATKPSSTGKLPAKGSTRQRLHPG 298

Query: 298 MLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK 357
           +LS QDRA +HYGAVTGLKVT DGMYLLSAGSDSR++LWDVESG NTLVNFET+RLQT+K
Sbjct: 299 LLSGQDRAVSHYGAVTGLKVTGDGMYLLSAGSDSRLKLWDVESGCNTLVNFETIRLQTNK 358

Query: 358 PIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND 417
           P+QLAT+QD ++VF PCM  VKAFD+W+GKT LTF GHYE VNCC ++  DQELYTGGND
Sbjct: 359 PLQLATSQDSSLVFAPCMATVKAFDMWTGKTSLTFSGHYEGVNCCWYNFPDQELYTGGND 418

Query: 418 RQILVWCPSRHISDGVDAGPMQDQDNWSD 446
           RQILVW PS++ ++ +D     D+DNWSD
Sbjct: 419 RQILVWSPSQNSTE-LDWESTADKDNWSD 446

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510566|ref|XP_003524008.1| PREDICTED: DNA excision repair protein ERCC-8-like [Glycine max]

 Score =  696 bits (1797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/452 (73%), Positives = 385/452 (85%), Gaps = 8/452 (1%)

Query: 1   MWKEIGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLL 60
           +WK I  REAG++R N FANR+KS+R+S LQLSN+K+IVSPHKG+INSLQVD TE RYLL
Sbjct: 9   VWKRIRDREAGKLRANHFANRIKSNRISQLQLSNHKDIVSPHKGAINSLQVDSTEGRYLL 68

Query: 61  SGASDSSVAVYDVQRATDYEGGGH----IAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116
           S ASD+SVAVYDVQR T YE GG     I+KH S+FVVDKQH+ GHKYA+S+AIWYP+DT
Sbjct: 69  SAASDASVAVYDVQRPTVYEAGGGGGGGISKHSSIFVVDKQHQQGHKYAVSTAIWYPIDT 128

Query: 117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCD 176
           GLFVTGSYDH++ VWDTN T+VV+NFKMPGKV+R AMS L+ SHMLIAA TEDVQVRLCD
Sbjct: 129 GLFVTGSYDHHINVWDTNTTQVVVNFKMPGKVHRAAMSNLSTSHMLIAAATEDVQVRLCD 188

Query: 177 IASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQL 236
           IASGA + TLSGHRDG+MTVEWS SSEW+LVTGGCDGAIRFWDIRRAGCF+VLDQSQ+QL
Sbjct: 189 IASGAFAHTLSGHRDGVMTVEWSNSSEWVLVTGGCDGAIRFWDIRRAGCFQVLDQSQTQL 248

Query: 237 GRRPPLLKRKVSI---SKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQR 293
           GRRPP+LKR +     S+SL   Q+SS K RA QK+ ANG+G RQ  +GR+P+KG ++QR
Sbjct: 249 GRRPPILKRSMITKVKSQSLYHSQDSSTKLRAAQKKHANGSGSRQQPIGRVPSKGPMKQR 308

Query: 294 LHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRL 353
           LHPGMLS+QDRATAHYGAVTGLK TEDGMYLLSAGSDSR+RLWDVES  NTLVNFETVRL
Sbjct: 309 LHPGMLSTQDRATAHYGAVTGLKATEDGMYLLSAGSDSRLRLWDVESSCNTLVNFETVRL 368

Query: 354 QTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYT 413
           Q +KP+QLATTQD A+VFVPCM +VKAFD+WSG T    RGHYE VN C F+  DQELYT
Sbjct: 369 QINKPLQLATTQDSALVFVPCMRSVKAFDMWSGNTYTILRGHYECVNSCWFNQHDQELYT 428

Query: 414 GGNDRQILVWCPSRHISDGVDAGPMQDQDNWS 445
           GGNDRQILVW P+R I+D ++ G  +DQDNWS
Sbjct: 429 GGNDRQILVWSPARSIADEME-GTAEDQDNWS 459

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514489|ref|XP_003525938.1| PREDICTED: LOW QUALITY PROTEIN: DNA excision repair protein ERCC-8-like [Glycine max]

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/457 (70%), Positives = 378/457 (82%), Gaps = 12/457 (2%)

Query: 1   MWKEIGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLL 60
           +WK I  REAG++  + FANR+K +R+S LQLSN+K+IVSPHKG+INSLQ+D TE RYLL
Sbjct: 9   VWKRIRDREAGKLHASHFANRIKWNRISQLQLSNHKDIVSPHKGAINSLQIDSTEGRYLL 68

Query: 61  SGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120
           S ASD+SVAVYDVQR T YE GG I+KH S+FVVDKQH+  HKYA+SSAIWYP+DTGLFV
Sbjct: 69  SAASDASVAVYDVQRPTVYEAGGVISKHSSIFVVDKQHQQAHKYAVSSAIWYPIDTGLFV 128

Query: 121 TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG 180
           TGSYDH++ VWDTN T+VV+NFKMPGKV+R AMS L+ SHMLIAA TEDVQVRLCDIASG
Sbjct: 129 TGSYDHHINVWDTNTTQVVVNFKMPGKVHRAAMSNLSTSHMLIAAATEDVQVRLCDIASG 188

Query: 181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRP 240
           A + TLSGHRDG+MTVEWS SSEW+LVTGGCDGAIRFWDIRRAGCF+VLDQS++QLGRRP
Sbjct: 189 AFAHTLSGHRDGVMTVEWSNSSEWVLVTGGCDGAIRFWDIRRAGCFQVLDQSRTQLGRRP 248

Query: 241 PLLKRKV------------SISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKG 288
            +L   +              + +    Q+SS K  A QK+ ANG+G RQ  +GR+P+KG
Sbjct: 249 TILNHSMITKVFFFIFXFSISADTFIGSQDSSTKLSAAQKKHANGSGSRQQLIGRVPSKG 308

Query: 289 SVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNF 348
            ++Q+LHPGMLS+QDRATAHYGAVTGLK TEDGMYLLSAGSDSR+RLWDVESG +TLVNF
Sbjct: 309 PMKQKLHPGMLSTQDRATAHYGAVTGLKATEDGMYLLSAGSDSRLRLWDVESGCDTLVNF 368

Query: 349 ETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQD 408
           ETVRLQ +KP+QLATTQD  +VFVPCM +VKAFD+WSG T    RGHYE VN C F+ QD
Sbjct: 369 ETVRLQVNKPLQLATTQDSTLVFVPCMRSVKAFDMWSGNTYTILRGHYECVNSCWFNQQD 428

Query: 409 QELYTGGNDRQILVWCPSRHISDGVDAGPMQDQDNWS 445
           QELYTGGNDRQILVW P+R ++D +D GP +DQDNWS
Sbjct: 429 QELYTGGNDRQILVWSPARSMADEMDEGPAEDQDNWS 465

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22329825|ref|NP_174105.2| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|15982897|gb|AAL09795.1| At1g27840/F28L5_15 [Arabidopsis thaliana] gi|18377624|gb|AAL66962.1| unknown protein [Arabidopsis thaliana] gi|20465583|gb|AAM20274.1| unknown protein [Arabidopsis thaliana] gi|332192760|gb|AEE30881.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana]

 Score =  660 bits (1702), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/453 (69%), Positives = 364/453 (80%), Gaps = 10/453 (2%)

Query: 1   MWKEIGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLL 60
           MW+ I  RE G+IR NSFANR KS R+ +LQLSN K+ VSPH+GS+NSLQVDLTE RYLL
Sbjct: 1   MWEAIKDRETGRIRSNSFANRFKSRRILSLQLSNRKDFVSPHRGSVNSLQVDLTEGRYLL 60

Query: 61  SGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120
           SGA+D S AV+DVQRATDYE  G IAKH+ +F VDKQHE+GHKYAISSAIWYP+DTGLF+
Sbjct: 61  SGAADGSAAVFDVQRATDYEASGLIAKHKCIFTVDKQHENGHKYAISSAIWYPIDTGLFI 120

Query: 121 TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG 180
           TGS+DHY+KVWDTN  + V++FKMPGKVYRTAMS +A SH LIAAGTEDVQVRLCDIASG
Sbjct: 121 TGSFDHYLKVWDTNTAQAVVDFKMPGKVYRTAMSSMAMSHTLIAAGTEDVQVRLCDIASG 180

Query: 181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRP 240
           A S TLSGHRDG+M+VEWSTSSEW+L TGGCDGAIRFWDIRRAGCFRVLDQSQ+QLG RP
Sbjct: 181 AFSHTLSGHRDGVMSVEWSTSSEWVLYTGGCDGAIRFWDIRRAGCFRVLDQSQTQLGFRP 240

Query: 241 PLLKRKV------SISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRL 294
           P+LKR        S++KS   GQN   + +  Q +      V+ SS  +   + S ++R+
Sbjct: 241 PILKRTAVGSKLSSVAKSSLGGQN---RLKTLQSKQTGSQSVKGSSSAKASVEKSRQKRI 297

Query: 295 HPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQ 354
           HPGMLS+ DRATAHYGAVTGLK T DGMYLLSAGSDSRIRLWD+ESGRNTLVNFET R+Q
Sbjct: 298 HPGMLSTLDRATAHYGAVTGLKATNDGMYLLSAGSDSRIRLWDIESGRNTLVNFETGRIQ 357

Query: 355 TSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTG 414
           T+K IQL T+ DPA+VFVPCM  VKAF +WSG+T L  RGHYE VN CCF+S DQELYT 
Sbjct: 358 TNKGIQLDTSDDPALVFVPCMKTVKAFGMWSGRTTLMLRGHYESVNTCCFNSNDQELYTS 417

Query: 415 GNDRQILVWCPSRHISDG-VDAGPMQDQDNWSD 446
           G+DRQILVW P   + D  V     +D+DNWSD
Sbjct: 418 GSDRQILVWSPGGTVEDEMVQDEVAEDKDNWSD 450

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851220|ref|XP_002893491.1| ATCSA-1 [Arabidopsis lyrata subsp. lyrata] gi|297339333|gb|EFH69750.1| ATCSA-1 [Arabidopsis lyrata subsp. lyrata]

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/450 (69%), Positives = 360/450 (80%), Gaps = 4/450 (0%)

Query: 1   MWKEIGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLL 60
           MWK I  RE G+IR NSFANR KS R+ +LQLSN K+ VSPH+GS+NSLQVDLTE RYLL
Sbjct: 1   MWKAIKDRETGRIRSNSFANRFKSGRILSLQLSNRKDFVSPHRGSVNSLQVDLTEGRYLL 60

Query: 61  SGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120
           SGA+D S AV+DVQRATDYE  G IAKH+ +F VDKQH++GHK+AISSAIWYP+DTGLFV
Sbjct: 61  SGAADGSAAVFDVQRATDYEASGLIAKHKCIFTVDKQHDNGHKFAISSAIWYPIDTGLFV 120

Query: 121 TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG 180
           TGSYDHY+KVWDTN  + V++FKMPGKVYRTAMS +A SH LIAAGTEDVQVRLCDIASG
Sbjct: 121 TGSYDHYLKVWDTNTAQAVVDFKMPGKVYRTAMSSMAMSHTLIAAGTEDVQVRLCDIASG 180

Query: 181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRP 240
           A S TLSGHRDG+M+VEWSTSSEW+L TGGCDGAIRFWDIRRAGCFRVLDQSQ+QLG RP
Sbjct: 181 AFSHTLSGHRDGVMSVEWSTSSEWVLYTGGCDGAIRFWDIRRAGCFRVLDQSQTQLGIRP 240

Query: 241 PLLKRKVSISKSLSAGQNS---SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPG 297
           P+LKR    SK  SA ++S     + +  Q +      V+ SS  +   + S ++R+HPG
Sbjct: 241 PILKRTAVSSKFYSAAKSSLGGQNRLKTLQSKHTGSQSVKGSSSAKASTEKSRQKRIHPG 300

Query: 298 MLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK 357
           MLS+ DRATAHYG VTGLK T DGMYLLSAGSDSRIRLWD+ESGRNTLVNFET R+QT+K
Sbjct: 301 MLSTLDRATAHYGVVTGLKATNDGMYLLSAGSDSRIRLWDIESGRNTLVNFETGRIQTNK 360

Query: 358 PIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND 417
            IQL T+ DPA+VFVPCM  VK F +WSG+T L  RGHYE VN CCF+S DQELYT G D
Sbjct: 361 AIQLDTSDDPALVFVPCMKTVKTFGMWSGRTTLMLRGHYESVNTCCFNSSDQELYTSGAD 420

Query: 418 RQILVWCPSRHISDG-VDAGPMQDQDNWSD 446
           RQILVW P   + D  V     +D+DNWSD
Sbjct: 421 RQILVWSPGGSVEDEMVQDEVAEDKDNWSD 450

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79318736|ref|NP_001031099.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|332192762|gb|AEE30883.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana]

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/454 (69%), Positives = 364/454 (80%), Gaps = 11/454 (2%)

Query: 1   MWKEIGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLL 60
           MW+ I  RE G+IR NSFANR KS R+ +LQLSN K+ VSPH+GS+NSLQVDLTE RYLL
Sbjct: 1   MWEAIKDRETGRIRSNSFANRFKSRRILSLQLSNRKDFVSPHRGSVNSLQVDLTEGRYLL 60

Query: 61  SGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120
           SGA+D S AV+DVQRATDYE  G IAKH+ +F VDKQHE+GHKYAISSAIWYP+DTGLF+
Sbjct: 61  SGAADGSAAVFDVQRATDYEASGLIAKHKCIFTVDKQHENGHKYAISSAIWYPIDTGLFI 120

Query: 121 TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG 180
           TGS+DHY+KVWDTN  + V++FKMPGKVYRTAMS +A SH LIAAGTEDVQVRLCDIASG
Sbjct: 121 TGSFDHYLKVWDTNTAQAVVDFKMPGKVYRTAMSSMAMSHTLIAAGTEDVQVRLCDIASG 180

Query: 181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRP 240
           A S TLSGHRDG+M+VEWSTSSEW+L TGGCDGAIRFWDIRRAGCFRVLDQSQ+QLG RP
Sbjct: 181 AFSHTLSGHRDGVMSVEWSTSSEWVLYTGGCDGAIRFWDIRRAGCFRVLDQSQTQLGFRP 240

Query: 241 PLLKRKV------SISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRL 294
           P+LKR        S++KS   GQN   + +  Q +      V+ SS  +   + S ++R+
Sbjct: 241 PILKRTAVGSKLSSVAKSSLGGQN---RLKTLQSKQTGSQSVKGSSSAKASVEKSRQKRI 297

Query: 295 HPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQ 354
           HPGMLS+ DRATAHYGAVTGLK T DGMYLLSAGSDSRIRLWD+ESGRNTLVNFET R+Q
Sbjct: 298 HPGMLSTLDRATAHYGAVTGLKATNDGMYLLSAGSDSRIRLWDIESGRNTLVNFETGRIQ 357

Query: 355 TSKPIQLATTQDPAVVFVPCMTAVK-AFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYT 413
           T+K IQL T+ DPA+VFVPCM  VK AF +WSG+T L  RGHYE VN CCF+S DQELYT
Sbjct: 358 TNKGIQLDTSDDPALVFVPCMKTVKVAFGMWSGRTTLMLRGHYESVNTCCFNSNDQELYT 417

Query: 414 GGNDRQILVWCPSRHISDG-VDAGPMQDQDNWSD 446
            G+DRQILVW P   + D  V     +D+DNWSD
Sbjct: 418 SGSDRQILVWSPGGTVEDEMVQDEVAEDKDNWSD 451

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	446
TAIR|locus:2029815	451	ATCSA-1 "AT1G27840" [Arabidops	0.993	0.982	0.693	1.7e-169
TAIR|locus:2035449	450	AT1G19750 "AT1G19750" [Arabido	1.0	0.991	0.677	3.3e-166
UNIPROTKB|E1C100	399	ERCC8 "Uncharacterized protein	0.508	0.568	0.357	2.3e-68
UNIPROTKB|E2RFS7	396	ERCC8 "Uncharacterized protein	0.5	0.563	0.364	1.8e-66
MGI|MGI:1919241	397	Ercc8 "excision repaiross-comp	0.5	0.561	0.368	2.9e-66
UNIPROTKB|F1SKV7	396	ERCC8 "Uncharacterized protein	0.5	0.563	0.372	4.8e-66
UNIPROTKB|Q5BIM8	397	ERCC8 "DNA excision repair pro	0.5	0.561	0.368	4.8e-66
RGD|1311570	397	Ercc8 "excision repair cross-c	0.5	0.561	0.364	1.6e-65
UNIPROTKB|Q13216	396	ERCC8 "DNA excision repair pro	0.5	0.563	0.355	4.2e-65
UNIPROTKB|B3KPW7	338	ERCC8 "DNA excision repair pro	0.378	0.5	0.385	1.8e-58

TAIR|locus:2029815 ATCSA-1 "AT1G27840" [Arabidopsis thaliana (taxid:3702)]

 Score = 1648 (585.2 bits), Expect = 1.7e-169, P = 1.7e-169
 Identities = 315/454 (69%), Positives = 364/454 (80%)

Query:     1 MWKEIGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLL 60
             MW+ I  RE G+IR NSFANR KS R+ +LQLSN K+ VSPH+GS+NSLQVDLTE RYLL
Sbjct:     1 MWEAIKDRETGRIRSNSFANRFKSRRILSLQLSNRKDFVSPHRGSVNSLQVDLTEGRYLL 60

Query:    61 SGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120
             SGA+D S AV+DVQRATDYE  G IAKH+ +F VDKQHE+GHKYAISSAIWYP+DTGLF+
Sbjct:    61 SGAADGSAAVFDVQRATDYEASGLIAKHKCIFTVDKQHENGHKYAISSAIWYPIDTGLFI 120

Query:   121 TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG 180
             TGS+DHY+KVWDTN  + V++FKMPGKVYRTAMS +A SH LIAAGTEDVQVRLCDIASG
Sbjct:   121 TGSFDHYLKVWDTNTAQAVVDFKMPGKVYRTAMSSMAMSHTLIAAGTEDVQVRLCDIASG 180

Query:   181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRP 240
             A S TLSGHRDG+M+VEWSTSSEW+L TGGCDGAIRFWDIRRAGCFRVLDQSQ+QLG RP
Sbjct:   181 AFSHTLSGHRDGVMSVEWSTSSEWVLYTGGCDGAIRFWDIRRAGCFRVLDQSQTQLGFRP 240

Query:   241 PLLKRKV------SISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRL 294
             P+LKR        S++KS   GQN   + +  Q +      V+ SS  +   + S ++R+
Sbjct:   241 PILKRTAVGSKLSSVAKSSLGGQN---RLKTLQSKQTGSQSVKGSSSAKASVEKSRQKRI 297

Query:   295 HPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQ 354
             HPGMLS+ DRATAHYGAVTGLK T DGMYLLSAGSDSRIRLWD+ESGRNTLVNFET R+Q
Sbjct:   298 HPGMLSTLDRATAHYGAVTGLKATNDGMYLLSAGSDSRIRLWDIESGRNTLVNFETGRIQ 357

Query:   355 TSKPIQLATTQDPAVVFVPCMTAVK-AFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYT 413
             T+K IQL T+ DPA+VFVPCM  VK AF +WSG+T L  RGHYE VN CCF+S DQELYT
Sbjct:   358 TNKGIQLDTSDDPALVFVPCMKTVKVAFGMWSGRTTLMLRGHYESVNTCCFNSNDQELYT 417

Query:   414 GGNDRQILVWCPSRHISDG-VDAGPMQDQDNWSD 446
              G+DRQILVW P   + D  V     +D+DNWSD
Sbjct:   418 SGSDRQILVWSPGGTVEDEMVQDEVAEDKDNWSD 451

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0006281 "DNA repair" evidence=IMP

GO:0010224 "response to UV-B" evidence=IMP

TAIR|locus:2035449 AT1G19750 "AT1G19750" [Arabidopsis thaliana (taxid:3702)]

 Score = 1617 (574.3 bits), Expect = 3.3e-166, P = 3.3e-166
 Identities = 305/450 (67%), Positives = 357/450 (79%)

Query:     1 MWKEIGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLL 60
             MWK    RE G+ R NSFANR KS R+ +LQLSN K+ VSPH+GS+NSLQVDLTE RYLL
Sbjct:     1 MWKAFKDRETGRFRSNSFANRFKSRRILSLQLSNRKDFVSPHRGSVNSLQVDLTEGRYLL 60

Query:    61 SGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120
             SGA+D S AV+DV+RATDYE  G IAKH+ +F V KQHE+GHKYAISSAIWYP+DTG+F+
Sbjct:    61 SGAADGSAAVFDVKRATDYEASGLIAKHKCIFTVRKQHENGHKYAISSAIWYPIDTGMFI 120

Query:   121 TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG 180
             TGS+DHYVKVWDTN ++VV++FKMPGKVYRTAMS +A SH LIAAGT+DVQVRLCDIASG
Sbjct:   121 TGSFDHYVKVWDTNTSQVVVDFKMPGKVYRTAMSSMAMSHTLIAAGTDDVQVRLCDIASG 180

Query:   181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRP 240
             A S TLSGHRDG+M+VEWSTSSEW+L TGGCDGAIRFWDIRRAGCFRVLD SQ+QLG RP
Sbjct:   181 AFSHTLSGHRDGVMSVEWSTSSEWVLYTGGCDGAIRFWDIRRAGCFRVLDNSQTQLGVRP 240

Query:   241 PLLKRKVSISKSLSAGQNSSVKP---RAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPG 297
             P+LKR    SK  SA ++S       +  Q +      V+ SS  +   + S ++R+HPG
Sbjct:   241 PILKRPAVSSKFFSAAKSSLGDQNWLKTLQSKHTGSQSVKGSSSEKPSVEKSRQKRIHPG 300

Query:   298 MLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK 357
             MLS+ DRATAHYG VTGLK T DGMYLLSAGS SRIRLWD+ESGRNTLVNFET R+QT +
Sbjct:   301 MLSTLDRATAHYGVVTGLKATNDGMYLLSAGSYSRIRLWDIESGRNTLVNFETGRIQTDR 360

Query:   358 PIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND 417
              IQL T+ DPA+VFVPCM  VK F +WSG+T L  RGHYE VN CCF+S DQELYT G D
Sbjct:   361 AIQLDTSDDPALVFVPCMKTVKGFGMWSGRTTLMLRGHYESVNTCCFNSNDQELYTSGAD 420

Query:   418 RQILVWCPSRHISDGVDAGPM-QDQDNWSD 446
             RQI+VW P   + D +  G + +D+DNWSD
Sbjct:   421 RQIIVWSPGGSVEDEMAQGEVAEDKDNWSD 450

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

UNIPROTKB|E1C100 ERCC8 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 435 (158.2 bits), Expect = 2.3e-68, Sum P(2) = 2.3e-68
 Identities = 83/232 (35%), Positives = 130/232 (56%)

Query:     5 IGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGAS 64
             I  R+AG   P        + R+ +L+L+  +++   H   IN+L ++  E RY+LSG S
Sbjct:     5 ISARQAGLDDPLRLRRAESTRRVLSLELNKDRDVERIHGSGINTLDIEPVEGRYMLSGGS 64

Query:    65 DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY 124
             D  + +YD++  +      +  K  ++  V + H   HK+++ +  WYP DTG+F + S+
Sbjct:    65 DGVIVLYDLENLS--RKPNYTCK--ALCSVGRSHPDAHKFSVETVQWYPHDTGMFTSSSF 120

Query:   125 DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ 184
             D  +K+WDTN  +    F+  G VY   MSP+A  H LIA GT+  +V+LCD+ SG+ S 
Sbjct:   121 DKTLKIWDTNTLQPADVFQFEGTVYSHHMSPVATKHCLIAVGTKSPKVQLCDLKSGSCSH 180

Query:   185 TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA-GCFRVLDQSQSQ 235
              L GHR  ++ V WS   E++L T   D  ++ WD+RRA GC   LDQ   +
Sbjct:   181 ILQGHRQEVLAVSWSPRHEYVLATASADSKVKLWDVRRASGCLTTLDQHNGE 232

GO:0000109 "nucleotide-excision repair complex" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0006283 "transcription-coupled nucleotide-excision repair" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0009411 "response to UV" evidence=IEA

GO:0010165 "response to X-ray" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0045739 "positive regulation of DNA repair" evidence=IEA

GO:0051865 "protein autoubiquitination" evidence=IEA

UNIPROTKB|E2RFS7 ERCC8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 424 (154.3 bits), Expect = 1.8e-66, Sum P(2) = 1.8e-66
 Identities = 83/228 (36%), Positives = 126/228 (55%)

Query:     5 IGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGAS 64
             +  R+AG   P        + R+  L+L+  +++   H   +N+L ++  E RY+LSG S
Sbjct:     5 LSARQAGLDHPLRLRRAESTRRVLGLELNKDRDVERIHGSGVNTLDIEPVEARYMLSGGS 64

Query:    65 DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY 124
             D  + +YD++ ++      +  K  +V  V + H   HKY++ +  WYP DTG+F + S+
Sbjct:    65 DGVIVLYDLENSSRQPY--YTCK--AVCSVGRNHPDVHKYSVETVQWYPHDTGMFTSSSF 120

Query:   125 DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ 184
             D  +KVWDTN  +    F     VY   MSP+A  H L+A GT   +V+LCD+ SG+ S 
Sbjct:   121 DKTLKVWDTNTLQTADVFNFEETVYSHHMSPVATKHCLVAVGTRGPKVQLCDLKSGSCSH 180

Query:   185 TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA-GCFRVLDQ 231
              L GHR  I+ V WS   E++L T   D  ++ WD+RRA GC   LDQ
Sbjct:   181 ILQGHRQEILAVSWSPRCEYVLATASADSRVKLWDVRRASGCLITLDQ 228

GO:0051865 "protein autoubiquitination" evidence=IEA

GO:0045739 "positive regulation of DNA repair" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0010165 "response to X-ray" evidence=IEA

GO:0009411 "response to UV" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0006283 "transcription-coupled nucleotide-excision repair" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0000109 "nucleotide-excision repair complex" evidence=IEA

MGI|MGI:1919241 Ercc8 "excision repaiross-complementing rodent repair deficiency, complementation group 8" [Mus musculus (taxid:10090)]

 Score = 422 (153.6 bits), Expect = 2.9e-66, Sum P(2) = 2.9e-66
 Identities = 84/228 (36%), Positives = 125/228 (54%)

Query:     5 IGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGAS 64
             +  R++G   P        + R+  L+L+  +++   H   +N+L ++  E RY+LSG S
Sbjct:     5 LSARQSGLEDPLRLRRAQSTRRVLGLELNKDRDVERIHGSGVNTLDIEPVEGRYMLSGGS 64

Query:    65 DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY 124
             D  V +YD++ A+      H    ++V  V + H   HKY++ +  WYP DTG+F + S+
Sbjct:    65 DGVVVLYDLENASRQP---HYTC-KAVCSVGRSHPDVHKYSVETVQWYPHDTGMFTSSSF 120

Query:   125 DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ 184
             D  +KVWDTN  +    F     VY   MSP A  H L+A GT   +V+LCD+ SG+ S 
Sbjct:   121 DKTLKVWDTNTLQAADVFNFEETVYSHHMSPAATKHCLVAVGTRGPKVQLCDLKSGSCSH 180

Query:   185 TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA-GCFRVLDQ 231
              L GHR  I+ V WS   ++IL T   D  ++ WD+RRA GC   LDQ
Sbjct:   181 ILQGHRQEILAVSWSPRHDYILATASADSRVKLWDVRRASGCLLTLDQ 228

GO:0000109 "nucleotide-excision repair complex" evidence=ISO

GO:0000209 "protein polyubiquitination" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0006281 "DNA repair" evidence=IEA

GO:0006283 "transcription-coupled nucleotide-excision repair" evidence=ISO

GO:0006289 "nucleotide-excision repair" evidence=ISO

GO:0006974 "response to DNA damage stimulus" evidence=ISO

GO:0006979 "response to oxidative stress" evidence=ISO

GO:0009411 "response to UV" evidence=ISO;IMP

GO:0010165 "response to X-ray" evidence=IMP

GO:0016363 "nuclear matrix" evidence=ISO

GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=ISO

GO:0032403 "protein complex binding" evidence=ISO

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0045739 "positive regulation of DNA repair" evidence=ISO

GO:0051865 "protein autoubiquitination" evidence=ISO

UNIPROTKB|F1SKV7 ERCC8 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 421 (153.3 bits), Expect = 4.8e-66, Sum P(2) = 4.8e-66
 Identities = 85/228 (37%), Positives = 126/228 (55%)

Query:     5 IGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGAS 64
             +  R+AG   P        + R+  L+L+  +++   H   +N+L ++  E RY+LSG S
Sbjct:     5 LSARQAGLEDPLRLRRAESTRRVLGLELNKDRDVERIHGSGVNTLDIEPVEGRYMLSGGS 64

Query:    65 DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY 124
             D  + +YD++ A+      +  K  +V  V + H   HKY++ +  WYP DTG+F + S+
Sbjct:    65 DGVIVLYDLENASRQPY--YTCK--AVCSVGRNHPDVHKYSVETVQWYPHDTGMFTSSSF 120

Query:   125 DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ 184
             D  +KVWDTN  +    F     VY   MSP+A  H L+A GT+  +V+LCD+ SG+ S 
Sbjct:   121 DKTLKVWDTNTLQTADVFNFEETVYSHHMSPVATKHCLVAVGTKGPKVQLCDLKSGSCSH 180

Query:   185 TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA-GCFRVLDQ 231
              L GHR  I+ V WS   E+IL T   D   + WD+RRA GC   LDQ
Sbjct:   181 ILQGHRQEILAVSWSPRYEYILATASADSKAKLWDVRRASGCLITLDQ 228

GO:0051865 "protein autoubiquitination" evidence=IEA

GO:0045739 "positive regulation of DNA repair" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0010165 "response to X-ray" evidence=IEA

GO:0009411 "response to UV" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0006283 "transcription-coupled nucleotide-excision repair" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0000109 "nucleotide-excision repair complex" evidence=IEA

UNIPROTKB|Q5BIM8 ERCC8 "DNA excision repair protein ERCC-8" [Bos taurus (taxid:9913)]

 Score = 419 (152.6 bits), Expect = 4.8e-66, Sum P(2) = 4.8e-66
 Identities = 84/228 (36%), Positives = 126/228 (55%)

Query:     5 IGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGAS 64
             +  R+AG   P        + R+  L+L+  +++   H   +N+L ++  E RY+LSG S
Sbjct:     5 LSARQAGLEDPLRLRRAESTRRVLGLELNKDRDVERIHCSGVNTLDIEPVEGRYMLSGGS 64

Query:    65 DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY 124
             D  + +YD++ ++      +  K  +V  V + H   HKY++ +  WYP DTG+F + S+
Sbjct:    65 DGVIVLYDLENSSRQPY--YTCK--AVCSVGRSHPDVHKYSVETVQWYPHDTGMFTSSSF 120

Query:   125 DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ 184
             D  +KVWDTN  ++   F     VY   MSP+A  H L+A GT   +V+LCD+ SG+ S 
Sbjct:   121 DKTLKVWDTNTLQIADVFNFEETVYSHHMSPVATKHCLVAVGTRGPKVQLCDLKSGSCSH 180

Query:   185 TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA-GCFRVLDQ 231
              L GHR  I+ V WS   E+IL T   D   + WD+RRA GC   LDQ
Sbjct:   181 ILQGHRQEILAVSWSPRYEYILATASADSRAKLWDVRRASGCLITLDQ 228

GO:0009411 "response to UV" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0043234 "protein complex" evidence=ISS

GO:0006974 "response to DNA damage stimulus" evidence=ISS

GO:0051865 "protein autoubiquitination" evidence=ISS

GO:0045739 "positive regulation of DNA repair" evidence=ISS

GO:0032403 "protein complex binding" evidence=ISS

GO:0006979 "response to oxidative stress" evidence=ISS

GO:0006289 "nucleotide-excision repair" evidence=ISS

GO:0006283 "transcription-coupled nucleotide-excision repair" evidence=ISS

GO:0000209 "protein polyubiquitination" evidence=ISS

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0010165 "response to X-ray" evidence=IEA

GO:0000109 "nucleotide-excision repair complex" evidence=IEA

RGD|1311570 Ercc8 "excision repair cross-complementing rodent repair deficiency, complementation group 8" [Rattus norvegicus (taxid:10116)]

 Score = 417 (151.9 bits), Expect = 1.6e-65, Sum P(2) = 1.6e-65
 Identities = 83/228 (36%), Positives = 125/228 (54%)

Query:     5 IGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGAS 64
             +  R++G   P        + R+  L+L+  +++   H   +N+L ++  E RY+LSG S
Sbjct:     5 LSARQSGLEDPLRLRRAQSTRRVLGLELNKDRDVERVHCSGVNTLDIEPVEGRYMLSGGS 64

Query:    65 DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY 124
             D  + +YD++ A+      +  K  +V  V + H   HKY++ +  WYP DTG+F + S+
Sbjct:    65 DGVIVLYDLENASRQPY--YTCK--AVCSVGRSHPDVHKYSVETVQWYPHDTGMFTSSSF 120

Query:   125 DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ 184
             D  +KVWDTN  +    F     VY   MSP A  H L+A GT   +V+LCD+ SG+ S 
Sbjct:   121 DKTLKVWDTNTLQAADVFNFEETVYSHHMSPAATKHCLVAVGTRGPKVQLCDLKSGSCSH 180

Query:   185 TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA-GCFRVLDQ 231
              L GHR  I+ V WS   ++IL T   D  ++ WD+RRA GC   LDQ
Sbjct:   181 ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLLTLDQ 228

GO:0000109 "nucleotide-excision repair complex" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006283 "transcription-coupled nucleotide-excision repair" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0009411 "response to UV" evidence=IEA

GO:0010165 "response to X-ray" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0045739 "positive regulation of DNA repair" evidence=IEA

GO:0051865 "protein autoubiquitination" evidence=IEA

UNIPROTKB|Q13216 ERCC8 "DNA excision repair protein ERCC-8" [Homo sapiens (taxid:9606)]

 Score = 416 (151.5 bits), Expect = 4.2e-65, Sum P(2) = 4.2e-65
 Identities = 81/228 (35%), Positives = 126/228 (55%)

Query:     5 IGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGAS 64
             +  R+ G   P        + R+  L+L+  +++   H G IN+L ++  E RY+LSG S
Sbjct:     5 LSARQTGLEDPLRLRRAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGS 64

Query:    65 DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY 124
             D  + +YD++ ++      +  K  +V  + + H   H+Y++ +  WYP DTG+F + S+
Sbjct:    65 DGVIVLYDLENSS--RQSYYTCK--AVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF 120

Query:   125 DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ 184
             D  +KVWDTN  +    F     VY   MSP++  H L+A GT   +V+LCD+ SG+ S 
Sbjct:   121 DKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH 180

Query:   185 TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA-GCFRVLDQ 231
              L GHR  I+ V WS   ++IL T   D  ++ WD+RRA GC   LDQ
Sbjct:   181 ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQ 228

GO:0010165 "response to X-ray" evidence=IEA

GO:0006289 "nucleotide-excision repair" evidence=IMP;TAS

GO:0006979 "response to oxidative stress" evidence=IDA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0008094 "DNA-dependent ATPase activity" evidence=IDA

GO:0006974 "response to DNA damage stimulus" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0000209 "protein polyubiquitination" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0009411 "response to UV" evidence=IMP;IDA

GO:0045739 "positive regulation of DNA repair" evidence=IMP

GO:0006283 "transcription-coupled nucleotide-excision repair" evidence=IDA;IMP;TAS

GO:0003678 "DNA helicase activity" evidence=IDA

GO:0032403 "protein complex binding" evidence=IDA

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=IDA

GO:0000109 "nucleotide-excision repair complex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0016363 "nuclear matrix" evidence=IDA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006281 "DNA repair" evidence=TAS

UNIPROTKB|B3KPW7 ERCC8 "DNA excision repair protein ERCC-8" [Homo sapiens (taxid:9606)]

 Score = 353 (129.3 bits), Expect = 1.8e-58, Sum P(2) = 1.8e-58
 Identities = 67/174 (38%), Positives = 100/174 (57%)

Query:    59 LLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL 118
             +LSG SD  + +YD++ ++      +  K  +V  + + H   H+Y++ +  WYP DTG+
Sbjct:     1 MLSGGSDGVIVLYDLENSS--RQSYYTCK--AVCSIGRDHPDVHRYSVETVQWYPHDTGM 56

Query:   119 FVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA 178
             F + S+D  +KVWDTN  +    F     VY   MSP++  H L+A GT   +V+LCD+ 
Sbjct:    57 FTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK 116

Query:   179 SGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA-GCFRVLDQ 231
             SG+ S  L GHR  I+ V WS   ++IL T   D  ++ WD+RRA GC   LDQ
Sbjct:   117 SGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQ 170

GO:0009411 "response to UV" evidence=IEA

GO:0010165 "response to X-ray" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q13216	ERCC8_HUMAN	No assigned EC number	0.3053	0.8094	0.9116	yes	no
Q5BIM8	ERCC8_BOVIN	No assigned EC number	0.3123	0.8094	0.9093	yes	no
Q8CFD5	ERCC8_MOUSE	No assigned EC number	0.3125	0.8475	0.9521	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_XIV0025	hypothetical protein (449 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pg.C_LG_I002797	hypothetical protein (1088 aa)					•		•		0.713
	estExt_Genewise1_v1.C_LG_IV2251	hypothetical protein (909 aa)					•	•	•		0.535
	eugene3.00150723	hypothetical protein (401 aa)			•						0.500
	gw1.IX.47.1	hypothetical protein (385 aa)			•						0.499
	fgenesh4_pg.C_LG_XIV000147	hypothetical protein (451 aa)			•						0.476
	gw1.XII.1370.1	hypothetical protein (314 aa)			•						0.474
	gw1.VIII.402.1	hypothetical protein (356 aa)			•						0.471
	eugene3.00070994	hypothetical protein (462 aa)			•						0.470
	eugene3.00160385	hypothetical protein (218 aa)			•						0.469
	gw1.V.3808.1	hypothetical protein (341 aa)			•						0.468

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	446
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-28
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-20
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-19
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-18
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-17
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-15
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-07
smart00320	40	smart00320, WD40, WD40 repeats	3e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-05
smart00320	40	smart00320, WD40, WD40 repeats	3e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	7e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	8e-05
smart00320	40	smart00320, WD40, WD40 repeats	9e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	7e-04
smart00320	40	smart00320, WD40, WD40 repeats	9e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  113 bits (285), Expect = 1e-28
 Identities = 76/328 (23%), Positives = 127/328 (38%), Gaps = 51/328 (15%)

Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASH 160
           GH   ++   + P D  L  TGS D  +KVWD     ++   K      R   +   A  
Sbjct: 7   GHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS--ADG 63

Query: 161 MLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDI 220
             +A+G+ D  +RL D+ +G   +TL+GH   + +V +S     IL +   D  I+ WD+
Sbjct: 64  TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDV 122

Query: 221 RRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSL--SAGQNSSVKPRAPQKRSANGNGVRQ 278
               C   L       G    +     S   +   S+ Q+ ++K                
Sbjct: 123 ETGKCLTTLR------GHTDWVNSVAFSPDGTFVASSSQDGTIK---------------- 160

Query: 279 SSVGRI--PAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW 336
                +     G     L           T H G V  +  + DG  LLS+ SD  I+LW
Sbjct: 161 -----LWDLRTGKCVATL-----------TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW 204

Query: 337 DVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMT-AVKAFDIWSGKTCLTFRGH 395
           D+ +G+       T+R   +    +A + D  ++        ++ +D+ +G+   T  GH
Sbjct: 205 DLSTGKCL----GTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH 260

Query: 396 YEYVNCCCFSSQDQELYTGGNDRQILVW 423
              V    +S   + L +G  D  I +W
Sbjct: 261 TNSVTSLAWSPDGKRLASGSADGTIRIW 288

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 92.5 bits (228), Expect = 3e-20
 Identities = 93/407 (22%), Positives = 153/407 (37%), Gaps = 44/407 (10%)

Query: 36  KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVD 95
             ++  H+ SI S+      E  LLSG+SD ++ ++D+                      
Sbjct: 58  SLLLRGHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLI--------------- 101

Query: 96  KQHEHGHKYAISSAIWYPVDTGLFVT--GSYDHYVKVWD-TNCTRVVMNFKMPGK-VYRT 151
           K  E  H  ++S       D    +    S D  VK+WD +   +++   +   + V   
Sbjct: 102 KSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSL 161

Query: 152 AMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGC 211
           A SP     +L +  + D  ++L D+ +G    TL+GH D + ++ +S     ++ +G  
Sbjct: 162 AFSP--DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS 219

Query: 212 DGAIRFWDIRRAGCFRVL--DQSQSQLGRRPPLLKRKVSISK-------SLSAGQNSSVK 262
           DG IR WD+      R      S S +    P      S S         L +  +    
Sbjct: 220 DGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT 279

Query: 263 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHP-----GMLSSQDRATAHYGAVTGLKV 317
                        V  S  G++ A GS    +       G L S      H G V+ L  
Sbjct: 280 LSGHSSSV---LSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF 336

Query: 318 TEDGMYLLSAGS-DSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMT 376
           + DG  L+S GS D  IRLWD+ +G+       T+   ++      +     V       
Sbjct: 337 SPDGSLLVSGGSDDGTIRLWDLRTGKPLK----TLEGHSNVLSVSFSPDGRVVSSGSTDG 392

Query: 377 AVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 423
            V+ +D+ +G       GH   V    FS   + L +G +D  I +W
Sbjct: 393 TVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLW 439

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 87.0 bits (216), Expect = 4e-19
 Identities = 48/189 (25%), Positives = 81/189 (42%), Gaps = 24/189 (12%)

Query: 42  HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG 101
           H   ++S+     + R L S + D ++ V+DV+            K  +          G
Sbjct: 92  HTSYVSSVAF-SPDGRILSSSSRDKTIKVWDVETG----------KCLTTL-------RG 133

Query: 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASH 160
           H   ++S  + P D     + S D  +K+WD    + V       G+V   A SP     
Sbjct: 134 HTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP---DG 189

Query: 161 MLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDI 220
             + + + D  ++L D+++G    TL GH +G+ +V +S      L +G  DG IR WD+
Sbjct: 190 EKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYL-LASGSEDGTIRVWDL 248

Query: 221 RRAGCFRVL 229
           R   C + L
Sbjct: 249 RTGECVQTL 257

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 85.1 bits (209), Expect = 7e-18
 Identities = 72/337 (21%), Positives = 127/337 (37%), Gaps = 33/337 (9%)

Query: 33  SNYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVF 92
                 +  H  S+ SL      +      + D ++ ++D++                  
Sbjct: 145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST----------- 193

Query: 93  VVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMN-FKMPGKVYRT 151
                   GH   +SS  + P    L  +GS D  +++WD +  +++ +          +
Sbjct: 194 ------LAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS 247

Query: 152 AMSPLAASHMLIAAGTEDVQVRLCDIASGAIS-QTLSGHRDGIMTVEWSTSSEWILVTGG 210
           + SP      L+A+G+ D  +RL D+ S +   +TLSGH   +++V +S   +  L +G 
Sbjct: 248 SFSP---DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKL-LASGS 303

Query: 211 CDGAIRFWDIRRAGCFRVLDQSQS-------QLGRRPPLLKRKVSISKSLSAGQNSSVKP 263
            DG +R WD+        L                   LL    S   ++      + KP
Sbjct: 304 SDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKP 363

Query: 264 RAPQKRSANGNGVRQSSVGRIPAKGSVRQRL---HPGMLSSQDRATAHYGAVTGLKVTED 320
               +  +N   V  S  GR+ + GS    +        S       H   VT L  + D
Sbjct: 364 LKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPD 423

Query: 321 GMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK 357
           G  L S  SD+ IRLWD+++   ++      ++  SK
Sbjct: 424 GKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLASK 460

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 82.8 bits (205), Expect = 1e-17
 Identities = 58/245 (23%), Positives = 91/245 (37%), Gaps = 46/245 (18%)

Query: 183 SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPL 242
            +TL GH  G+  V +S   +  L TG  DG I+ WD+      R L     +    P  
Sbjct: 2   RRTLKGHTGGVTCVAFSPDGKL-LATGSGDGTIKVWDLETGELLRTL-----KGHTGPVR 55

Query: 243 LKRKVSISKSL-SAGQNSSVKPRAPQKRSANGNGVRQSSVGRI--PAKGSVRQRLHPGML 299
                +    L S   + ++                     R+     G   + L     
Sbjct: 56  DVAASADGTYLASGSSDKTI---------------------RLWDLETGECVRTL----- 89

Query: 300 SSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPI 359
                 T H   V+ +  + DG  L S+  D  I++WDVE+G+       T+R  T    
Sbjct: 90  ------TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT----TLRGHTDWVN 139

Query: 360 QLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDR 418
            +A + D   V        +K +D+ +GK   T  GH   VN   FS   ++L +  +D 
Sbjct: 140 SVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDG 199

Query: 419 QILVW 423
            I +W
Sbjct: 200 TIKLW 204

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 74.7 bits (184), Expect = 5e-15
 Identities = 46/179 (25%), Positives = 82/179 (45%), Gaps = 24/179 (13%)

Query: 42  HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG 101
           H   +NS+     +  ++ S + D ++ ++D+        G  +A              G
Sbjct: 134 HTDWVNSVAFS-PDGTFVASSSQDGTIKLWDL------RTGKCVATL-----------TG 175

Query: 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASH 160
           H   ++S  + P D    ++ S D  +K+WD +  + +   +     V   A SP     
Sbjct: 176 HTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP---DG 231

Query: 161 MLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
            L+A+G+ED  +R+ D+ +G   QTLSGH + + ++ WS   +  L +G  DG IR WD
Sbjct: 232 YLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKR-LASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 6/128 (4%)

Query: 301 SQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQ 360
           S      H  ++T +  + DG  LLS  SD  I+LWD+++G   + + E +   +   + 
Sbjct: 57  SSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLA 116

Query: 361 LATTQDPAVVFVPCMTAVKAFDIW----SGKTCLTFRGHYEYVNCCCFSSQDQELYTGGN 416
           L++      + +   +      +W     GK   T  GH E V    FS   + L +G +
Sbjct: 117 LSSPDGN-SILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS 175

Query: 417 -DRQILVW 423
            D  I +W
Sbjct: 176 LDGTIKLW 183

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 43.5 bits (103), Expect = 3e-06
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 385 SGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 423
           SG+   T +GH   V    FS   + L +G +D  I +W
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 13/38 (34%), Positives = 17/38 (44%)

Query: 386 GKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 423
           GK   T +GH   V    FS     L +G +D  + VW
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 40.4 bits (95), Expect = 3e-05
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 179 SGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
           SG + +TL GH   + +V +S   ++ L +G  DG I+ WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKY-LASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 39.6 bits (93), Expect = 7e-05
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 180 GAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
           G + +TL GH   + +V +S      L +G  DG +R WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNL-LASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 39.6 bits (93), Expect = 8e-05
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 306 TAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWD 337
             H G VT +  + DG  L S   D  +R+WD
Sbjct: 8   KGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 39.2 bits (92), Expect = 9e-05
 Identities = 14/32 (43%), Positives = 17/32 (53%)

Query: 306 TAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWD 337
             H G VT +  + DG YL S   D  I+LWD
Sbjct: 9   KGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 36.9 bits (86), Expect = 7e-04
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWD 132
            GH   ++S  + P D  L  +GS D  V+VWD
Sbjct: 8   KGHTGPVTSVAFSP-DGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 36.5 bits (85), Expect = 9e-04
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWD 132
            GH   ++S  + P D     +GS D  +K+WD
Sbjct: 9   KGHTGPVTSVAFSP-DGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	446
KOG4283	397	consensus Transcription-coupled repair protein CSA	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.98
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG0286	343	consensus G-protein beta subunit [General function	99.97
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0266	456	consensus WD40 repeat-containing protein [General	99.97
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.96
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.96
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.96
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.96
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.95
KOG0645	312	consensus WD40 repeat protein [General function pr	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.95
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
KOG2096	420	consensus WD40 repeat protein [General function pr	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.95
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.95
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.95
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.95
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.95
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
PTZ00420	568	coronin; Provisional	99.94
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.94
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.94
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.94
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.94
KOG1539	910	consensus WD repeat protein [General function pred	99.94
PTZ00420	568	coronin; Provisional	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.93
KOG0641	350	consensus WD40 repeat protein [General function pr	99.93
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.93
KOG0296	399	consensus Angio-associated migratory cell protein	99.93
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.93
KOG0643	327	consensus Translation initiation factor 3, subunit	99.93
KOG4328	498	consensus WD40 protein [Function unknown]	99.92
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.92
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.92
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.92
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.92
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.91
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.91
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.91
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.91
KOG0639	705	consensus Transducin-like enhancer of split protei	99.91
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.91
KOG0289	506	consensus mRNA splicing factor [General function p	99.91
KOG0646	476	consensus WD40 repeat protein [General function pr	99.91
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.9
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.9
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.9
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.9
KOG1274	933	consensus WD40 repeat protein [General function pr	99.9
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.9
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.9
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.9
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.9
KOG0267	825	consensus Microtubule severing protein katanin p80	99.89
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.89
KOG0641	350	consensus WD40 repeat protein [General function pr	99.89
KOG0267	825	consensus Microtubule severing protein katanin p80	99.89
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.89
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.88
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.88
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.88
KOG2055	514	consensus WD40 repeat protein [General function pr	99.88
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.88
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.88
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.88
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.87
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.87
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.86
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.86
KOG2096	420	consensus WD40 repeat protein [General function pr	99.85
KOG2048	691	consensus WD40 repeat protein [General function pr	99.85
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.85
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.85
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.85
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.84
KOG4227	609	consensus WD40 repeat protein [General function pr	99.84
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.84
KOG0639	705	consensus Transducin-like enhancer of split protei	99.84
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.84
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.84
KOG1273	405	consensus WD40 repeat protein [General function pr	99.84
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.84
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.83
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.83
KOG0646	476	consensus WD40 repeat protein [General function pr	99.83
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.82
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.81
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.81
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.81
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.8
KOG1539	910	consensus WD repeat protein [General function pred	99.8
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.8
KOG2048	691	consensus WD40 repeat protein [General function pr	99.8
KOG1188	376	consensus WD40 repeat protein [General function pr	99.79
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.79
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.77
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.76
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.75
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.75
KOG1334	559	consensus WD40 repeat protein [General function pr	99.74
COG2319	466	FOG: WD40 repeat [General function prediction only	99.74
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.74
PRK11028	330	6-phosphogluconolactonase; Provisional	99.74
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.73
COG2319	466	FOG: WD40 repeat [General function prediction only	99.72
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.72
KOG0649	325	consensus WD40 repeat protein [General function pr	99.72
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.71
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.7
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.7
KOG1274	933	consensus WD40 repeat protein [General function pr	99.7
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.69
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.68
KOG4328	498	consensus WD40 protein [Function unknown]	99.68
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.68
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.68
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.66
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.66
KOG1310	758	consensus WD40 repeat protein [General function pr	99.66
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.65
KOG1963	792	consensus WD40 repeat protein [General function pr	99.64
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.63
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.63
KOG2055	514	consensus WD40 repeat protein [General function pr	99.62
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.61
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.61
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.59
PRK01742	429	tolB translocation protein TolB; Provisional	99.58
KOG1273	405	consensus WD40 repeat protein [General function pr	99.58
KOG1310	758	consensus WD40 repeat protein [General function pr	99.57
KOG1188	376	consensus WD40 repeat protein [General function pr	99.55
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.55
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.54
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.53
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.49
PRK01742	429	tolB translocation protein TolB; Provisional	99.48
PRK11028	330	6-phosphogluconolactonase; Provisional	99.48
KOG1963	792	consensus WD40 repeat protein [General function pr	99.47
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.46
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.46
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.46
KOG2321	703	consensus WD40 repeat protein [General function pr	99.45
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.44
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.44
KOG0649	325	consensus WD40 repeat protein [General function pr	99.44
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.43
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.38
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.38
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.37
PRK03629	429	tolB translocation protein TolB; Provisional	99.37
PRK03629	429	tolB translocation protein TolB; Provisional	99.35
KOG4227	609	consensus WD40 repeat protein [General function pr	99.34
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.33
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.32
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.32
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.32
PRK05137	435	tolB translocation protein TolB; Provisional	99.32
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.31
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.31
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.3
PRK04922	433	tolB translocation protein TolB; Provisional	99.3
PRK04922	433	tolB translocation protein TolB; Provisional	99.3
PRK02889	427	tolB translocation protein TolB; Provisional	99.29
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.29
KOG4547	541	consensus WD40 repeat-containing protein [General	99.25
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.24
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.23
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.22
KOG1334	559	consensus WD40 repeat protein [General function pr	99.21
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.2
PRK05137	435	tolB translocation protein TolB; Provisional	99.2
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.19
PRK02889	427	tolB translocation protein TolB; Provisional	99.14
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.11
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.08
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.07
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.05
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.05
KOG4547	541	consensus WD40 repeat-containing protein [General	99.04
KOG2139	445	consensus WD40 repeat protein [General function pr	99.03
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.03
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.02
PRK04792	448	tolB translocation protein TolB; Provisional	99.01
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.0
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.99
KOG2139	445	consensus WD40 repeat protein [General function pr	98.99
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.98
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	98.98
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.97
PRK00178	430	tolB translocation protein TolB; Provisional	98.97
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.94
PRK04792	448	tolB translocation protein TolB; Provisional	98.92
PRK00178	430	tolB translocation protein TolB; Provisional	98.91
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.88
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.87
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.84
PRK01029	428	tolB translocation protein TolB; Provisional	98.77
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.77
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	98.73
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.71
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.7
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.67
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.65
KOG2315	566	consensus Predicted translation initiation factor	98.64
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.62
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.61
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.6
PRK01029	428	tolB translocation protein TolB; Provisional	98.59
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.58
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.55
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.53
KOG2321	703	consensus WD40 repeat protein [General function pr	98.51
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.49
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.46
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.43
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.39
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.37
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.34
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.33
PRK04043	419	tolB translocation protein TolB; Provisional	98.29
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.28
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.28
KOG2695	425	consensus WD40 repeat protein [General function pr	98.25
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.24
KOG2315	566	consensus Predicted translation initiation factor	98.24
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.24
KOG2695	425	consensus WD40 repeat protein [General function pr	98.23
COG4946	668	Uncharacterized protein related to the periplasmic	98.16
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.15
PRK04043	419	tolB translocation protein TolB; Provisional	98.13
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.13
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.1
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.06
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.05
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.04
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.02
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.98
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.93
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.9
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.89
COG4946	668	Uncharacterized protein related to the periplasmic	97.87
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.87
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.82
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.7
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.68
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.65
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.59
KOG2314	698	consensus Translation initiation factor 3, subunit	97.52
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.44
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.41
KOG2314	698	consensus Translation initiation factor 3, subunit	97.4
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.37
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.36
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.33
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.33
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.32
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.3
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.25
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.24
PRK02888	635	nitrous-oxide reductase; Validated	97.23
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.19
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.17
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.15
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.07
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.94
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.92
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.9
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.85
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	96.75
KOG2444	238	consensus WD40 repeat protein [General function pr	96.61
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.61
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.58
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.38
KOG2395	644	consensus Protein involved in vacuole import and d	96.35
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	96.26
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.15
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	96.1
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	96.1
KOG1008	783	consensus Uncharacterized conserved protein, conta	96.01
KOG3621	726	consensus WD40 repeat-containing protein [General	95.98
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	95.82
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	95.8
KOG3621	726	consensus WD40 repeat-containing protein [General	95.7
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.6
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	95.39
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.38
PRK02888	635	nitrous-oxide reductase; Validated	95.36
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	95.21
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	94.92
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	94.92
COG3391	381	Uncharacterized conserved protein [Function unknow	94.75
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	94.74
PHA02713	557	hypothetical protein; Provisional	94.73
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	94.64
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	94.43
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	94.35
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	94.18
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	94.12
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	93.52
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	93.46
KOG2395	644	consensus Protein involved in vacuole import and d	93.29
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.19
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	93.03
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	92.82
COG3391	381	Uncharacterized conserved protein [Function unknow	92.81
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	92.48
KOG2444	238	consensus WD40 repeat protein [General function pr	92.4
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	92.3
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	92.01
PHA02713	557	hypothetical protein; Provisional	91.89
PHA03098	534	kelch-like protein; Provisional	91.07
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	90.75
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	90.55
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	90.43
PF14727	418	PHTB1_N: PTHB1 N-terminus	89.91
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	89.9
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	89.64
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	89.52
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	89.0
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	88.84
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	88.82
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	87.4
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	86.74
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	86.3
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	85.95
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	85.42
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	85.14
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	84.97
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	84.9
PRK13616	591	lipoprotein LpqB; Provisional	84.83
PHA03098	534	kelch-like protein; Provisional	84.79
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	84.6
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	84.53
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	84.46
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	84.12
PHA02790	480	Kelch-like protein; Provisional	83.38
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	82.51
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	82.46
PHA02790	480	Kelch-like protein; Provisional	82.32
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	80.89

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=100.00  E-value=5e-52  Score=355.81  Aligned_cols=361  Identities=55%  Similarity=0.957  Sum_probs=318.7

Q ss_pred             CccccccccccccCCchhhhhhhh-cccceeccccceeEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCC
Q 013274            1 MWKEIGGREAGQIRPNSFANRVKS-HRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDY   79 (446)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~   79 (446)
                      ||+-..+||.| ++++.+++|.++ .++..|+++.-+.+..+|-|+||+|+..+.+|++++||+.||.|.|||+++...+
T Consensus         1 M~~fl~aRetG-~e~ns~~rR~~s~rRil~L~Ln~d~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~   79 (397)
T KOG4283|consen    1 MWSFLKARETG-QESNSFARRFKSQRRILSLQLNNDKDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDY   79 (397)
T ss_pred             Cchhhhhhhhc-CCCchHHHHHHhhhhhheeeccCCcceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccch
Confidence            89999999999 999999999999 7899999988888999999999999999999999999999999999999999888


Q ss_pred             CCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCC
Q 013274           80 EGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAAS  159 (446)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (446)
                      +..+.+.++.++  +..++..+|+.+|.++.|+|.|...|.|+|-|+++++||+++-+....|.+++.+|+-+++|....
T Consensus        80 e~s~li~k~~c~--v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~s  157 (397)
T KOG4283|consen   80 EASGLIAKHKCI--VAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMS  157 (397)
T ss_pred             hhccceeheeee--ccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhc
Confidence            888888888776  567788999999999999999999999999999999999999999999999999999999999988


Q ss_pred             ceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCC-ceeEEeecccccccC
Q 013274          160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA-GCFRVLDQSQSQLGR  238 (446)
Q Consensus       160 ~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~-~~~~~~~~~~~~~~~  238 (446)
                      +.++|+|..|-+|++.|+.+|.+..+|.||.+.|.+|.|+|..+|+|+||+.||.||+||+|.. +|++.++.++..   
T Consensus       158 HcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k---  234 (397)
T KOG4283|consen  158 HCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTK---  234 (397)
T ss_pred             ceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCc---
Confidence            9999999999999999999999999999999999999999999999999999999999999987 888888765531   


Q ss_pred             CCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEc
Q 013274          239 RPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVT  318 (446)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs  318 (446)
                      .+|.+                                                           +...+|++.|..++|+
T Consensus       235 ~~p~~-----------------------------------------------------------~~n~ah~gkvngla~t  255 (397)
T KOG4283|consen  235 RPPIL-----------------------------------------------------------KTNTAHYGKVNGLAWT  255 (397)
T ss_pred             cCccc-----------------------------------------------------------cccccccceeeeeeec
Confidence            11110                                                           0125789999999999


Q ss_pred             cCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeec--CCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccc
Q 013274          319 EDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT--SKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHY  396 (446)
Q Consensus       319 ~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~  396 (446)
                      .||.++++.+-|.++++|+..+|++++.++.....+.  ...+....-..+..++++..+.+.++.+.++..++.+.+|-
T Consensus       256 Sd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~  335 (397)
T KOG4283|consen  256 SDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHL  335 (397)
T ss_pred             ccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeeccc
Confidence            9999999999999999999999988776554332221  11222332233455667777899999999999999999999


Q ss_pred             cceEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274          397 EYVNCCCFSSQDQELYTGGNDRQILVWCPS  426 (446)
Q Consensus       397 ~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~  426 (446)
                      ..|+|.+|-||-+.+.+|+.|+.|-.|.|.
T Consensus       336 k~i~c~~~~~~fq~~~tg~~d~ni~~w~p~  365 (397)
T KOG4283|consen  336 KRINCAAYRPDFEQCFTGDMNGNIYMWSPA  365 (397)
T ss_pred             ceeeEEeecCchhhhhccccCCcccccccc
Confidence            999999999999999999999999999984

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.5e-48  Score=342.85  Aligned_cols=355  Identities=22%  Similarity=0.362  Sum_probs=258.4

Q ss_pred             eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (446)
Q Consensus        39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~  118 (446)
                      +.||.+.|-|++|+| ++..|||||.|.++|+||+.+.+.                 ..+..||+.-|.|+.|+| |++.
T Consensus       111 ~~GH~e~Vl~~~fsp-~g~~l~tGsGD~TvR~WD~~TeTp-----------------~~t~KgH~~WVlcvawsP-Dgk~  171 (480)
T KOG0271|consen  111 IAGHGEAVLSVQFSP-TGSRLVTGSGDTTVRLWDLDTETP-----------------LFTCKGHKNWVLCVAWSP-DGKK  171 (480)
T ss_pred             cCCCCCcEEEEEecC-CCceEEecCCCceEEeeccCCCCc-----------------ceeecCCccEEEEEEECC-Ccch
Confidence            568999999999998 688999999999999999987542                 123469999999999998 8999


Q ss_pred             EEEEeCCCeEEEEECCCCeeeE-EEe-cCCceEEeeeccCC--CCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeE
Q 013274          119 FVTGSYDHYVKVWDTNCTRVVM-NFK-MPGKVYRTAMSPLA--ASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM  194 (446)
Q Consensus       119 l~s~s~D~~i~iWd~~~~~~~~-~~~-~~~~~~~~~~~~~~--~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~  194 (446)
                      +|||+.||+|++||.++++++- .+. +...+..+++.|..  +...+||+++.||+|+|||+..+.++..+.||+.+|+
T Consensus       172 iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VT  251 (480)
T KOG0271|consen  172 IASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVT  251 (480)
T ss_pred             hhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceE
Confidence            9999999999999999887653 333 33457888888764  3345899999999999999999999999999999999


Q ss_pred             EEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCC--Cccc--c-
Q 013274          195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPR--APQK--R-  269 (446)
Q Consensus       195 sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~-  269 (446)
                      ||.|-.+  .+|+|||.|++||+|+...+.+++.+..+..-+....      ......+...........  ....  + 
T Consensus       252 CvrwGG~--gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~la------lsTdy~LRtgaf~~t~~~~~~~se~~~~  323 (480)
T KOG0271|consen  252 CVRWGGE--GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLA------LSTDYVLRTGAFDHTGRKPKSFSEEQKK  323 (480)
T ss_pred             EEEEcCC--ceEEecCCCceEEEEEccchhHHHhhcccchheeeee------ccchhhhhccccccccccCCChHHHHHH
Confidence            9999644  3689999999999999998888777755432211100      000000000000000000  0000  0 


Q ss_pred             -ccCCCc-eeecccceeecCCcccccc-CCCcc-cccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceee
Q 013274          270 -SANGNG-VRQSSVGRIPAKGSVRQRL-HPGML-SSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTL  345 (446)
Q Consensus       270 -~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~  345 (446)
                       ....+. ...+..--+.........+ .+... .+..+..+|...|+.+.||||++|+||+|-|+.||+||..+|+.  
T Consensus       324 Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~--  401 (480)
T KOG0271|consen  324 ALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKF--  401 (480)
T ss_pred             HHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcch--
Confidence             000000 0000000000111111111 11111 12235679999999999999999999999999999999999864  


Q ss_pred             eeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeC
Q 013274          346 VNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC  424 (446)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~  424 (446)
                        +..++.+....++++.+.|..++++++. .++++|++.+.++...|+||.+.|.++.|||||+++++|+.|..+|+|.
T Consensus       402 --lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  402 --LASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             --hhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence              2334445567788999999999888765 5799999999999999999999999999999999999999999999995

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=4e-43  Score=300.98  Aligned_cols=291  Identities=19%  Similarity=0.369  Sum_probs=234.9

Q ss_pred             eeEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecC
Q 013274           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (446)
Q Consensus        36 ~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~  115 (446)
                      ++++++|.+.|+++.|++ |.++|+|+|.||.+.|||.-+..+.         ..+        .-...-|-.++++| .
T Consensus        48 rr~LkGH~~Ki~~~~ws~-Dsr~ivSaSqDGklIvWDs~TtnK~---------hai--------pl~s~WVMtCA~sP-S  108 (343)
T KOG0286|consen   48 RRTLKGHLNKIYAMDWST-DSRRIVSASQDGKLIVWDSFTTNKV---------HAI--------PLPSSWVMTCAYSP-S  108 (343)
T ss_pred             EEEecccccceeeeEecC-CcCeEEeeccCCeEEEEEcccccce---------eEE--------ecCceeEEEEEECC-C
Confidence            578999999999999986 7899999999999999998654321         000        11234566677776 7


Q ss_pred             CcEEEEEeCCCeEEEEECCCC--e--eeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCC
Q 013274          116 TGLFVTGSYDHYVKVWDTNCT--R--VVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD  191 (446)
Q Consensus       116 ~~~l~s~s~D~~i~iWd~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~  191 (446)
                      ++.+|.||.|+..-||++.+.  +  ......+.++.-.++...+.. ...|+++|.|.++-+||++++.....|.||.+
T Consensus       109 g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~g  187 (343)
T KOG0286|consen  109 GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTG  187 (343)
T ss_pred             CCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcc
Confidence            889999999999999999855  2  112222344433333333322 34688999999999999999999999999999


Q ss_pred             CeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCcccccc
Q 013274          192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSA  271 (446)
Q Consensus       192 ~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (446)
                      .|.+++++|...+.|+||+.|+..+|||+|.+.|.+.|                                          
T Consensus       188 DV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF------------------------------------------  225 (343)
T KOG0286|consen  188 DVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTF------------------------------------------  225 (343)
T ss_pred             cEEEEecCCCCCCeEEecccccceeeeeccCcceeEee------------------------------------------
Confidence            99999999944446899999999999999988776554                                          


Q ss_pred             CCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEE
Q 013274          272 NGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV  351 (446)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~  351 (446)
                                                        .+|.+.|++|.|.|+|.-++||+.|+++|+||++..++ +..|+..
T Consensus       226 ----------------------------------~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~-~a~ys~~  270 (343)
T KOG0286|consen  226 ----------------------------------EGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE-LAVYSHD  270 (343)
T ss_pred             ----------------------------------cccccccceEEEccCCCeeeecCCCceeEEEeecCCcE-EeeeccC
Confidence                                              36888899999999999999999999999999998754 3333321


Q ss_pred             EeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeC
Q 013274          352 RLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC  424 (446)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~  424 (446)
                       ....+...++|+..+.+++.+.. ..+.+||.-+++....|.||.++|+|+..+|||..|+|||+|.++|||.
T Consensus       271 -~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  271 -SIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             -cccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence             12234567899999999998754 5899999999999999999999999999999999999999999999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.4e-44  Score=322.45  Aligned_cols=283  Identities=22%  Similarity=0.362  Sum_probs=242.3

Q ss_pred             CCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeec-CCcEE
Q 013274           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV-DTGLF  119 (446)
Q Consensus        41 ~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~-~~~~l  119 (446)
                      +-+++|..+.|+. ++..|||||-+|.++||+......                 .+.+.||+..|.++.|+|. ++..+
T Consensus       173 gd~rPis~~~fS~-ds~~laT~swsG~~kvW~~~~~~~-----------------~~~l~gH~~~v~~~~fhP~~~~~~l  234 (459)
T KOG0272|consen  173 GDTRPISGCSFSR-DSKHLATGSWSGLVKVWSVPQCNL-----------------LQTLRGHTSRVGAAVFHPVDSDLNL  234 (459)
T ss_pred             cCCCcceeeEeec-CCCeEEEeecCCceeEeecCCcce-----------------eEEEeccccceeeEEEccCCCccce
Confidence            5678999999985 688999999999999999865421                 2345799999999999998 46799


Q ss_pred             EEEeCCCeEEEEECCCCeeeEEEecC-CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEE
Q 013274          120 VTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEW  198 (446)
Q Consensus       120 ~s~s~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~  198 (446)
                      |||+.||++++|++++..++..+..+ ..+..++|+|   ++.+|+++|.|.+.++||++++..+...+||...|.+++|
T Consensus       235 at~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHP---sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf  311 (459)
T KOG0272|consen  235 ATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHP---SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAF  311 (459)
T ss_pred             eeeccCCceeeeccCCCcchhhhhcchhhheeeeecC---CCceeeecccccchhhcccccchhhHhhcccccccceeEe
Confidence            99999999999999987777766532 3466777777   4568999999999999999999999899999999999999


Q ss_pred             ecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceee
Q 013274          199 STSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQ  278 (446)
Q Consensus       199 s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (446)
                      .|+|. +++||+.|..-||||+|++.|+-.+                                                 
T Consensus       312 ~~DGS-L~~tGGlD~~~RvWDlRtgr~im~L-------------------------------------------------  341 (459)
T KOG0272|consen  312 QPDGS-LAATGGLDSLGRVWDLRTGRCIMFL-------------------------------------------------  341 (459)
T ss_pred             cCCCc-eeeccCccchhheeecccCcEEEEe-------------------------------------------------
Confidence            99998 5799999999999999998875443                                                 


Q ss_pred             cccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCC
Q 013274          279 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKP  358 (446)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~  358 (446)
                                                 .+|..+|.+|+|+|+|..|||||.|+++||||++..+.    +..+..+.+.+
T Consensus       342 ---------------------------~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~----ly~ipAH~nlV  390 (459)
T KOG0272|consen  342 ---------------------------AGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE----LYTIPAHSNLV  390 (459)
T ss_pred             ---------------------------cccccceeeEeECCCceEEeecCCCCcEEEeeeccccc----ceecccccchh
Confidence                                       36888899999999999999999999999999987653    23344455667


Q ss_pred             eEEEEcC-CCcEEEEeC-CCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCC
Q 013274          359 IQLATTQ-DPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP  425 (446)
Q Consensus       359 ~~~~~~~-~~~~~~~~~-~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~  425 (446)
                      ..+.+.| .+.+++.++ +..+++|.-.++.++++|.||++.|.+|.+|||+++++|+|.|+++|+|.+
T Consensus       391 S~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~~  459 (459)
T KOG0272|consen  391 SQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWRP  459 (459)
T ss_pred             hheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeeccC
Confidence            7888998 455565554 468999999999999999999999999999999999999999999999975

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-38  Score=271.48  Aligned_cols=294  Identities=21%  Similarity=0.345  Sum_probs=231.8

Q ss_pred             eeEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecC
Q 013274           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (446)
Q Consensus        36 ~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~  115 (446)
                      +..+++|++.|..++..+.+...|+++|.|.++.+|++......-  +     .     ....+.||...|..+..++ +
T Consensus         8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~--G-----~-----~~r~~~GHsH~v~dv~~s~-d   74 (315)
T KOG0279|consen    8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKY--G-----V-----PVRRLTGHSHFVSDVVLSS-D   74 (315)
T ss_pred             eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcccc--C-----c-----eeeeeeccceEecceEEcc-C
Confidence            445789999999999987667899999999999999997653210  0     0     1123468999999988886 8


Q ss_pred             CcEEEEEeCCCeEEEEECCCCeeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeC-CCCCe
Q 013274          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG-HRDGI  193 (446)
Q Consensus       116 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~-h~~~v  193 (446)
                      +++++|+|+|+++|+||+++++..+.|.. ...+.+++++++.   ..+++|+.|.+|++||+..+-......+ |.+-|
T Consensus        75 g~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn---~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WV  151 (315)
T KOG0279|consen   75 GNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDN---RQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWV  151 (315)
T ss_pred             CceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCC---ceeecCCCcceeeeeeecccEEEEEecCCCcCcE
Confidence            99999999999999999999987777764 3447888888754   4799999999999999876644443333 37889


Q ss_pred             EEEEEecCC-CeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccC
Q 013274          194 MTVEWSTSS-EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSAN  272 (446)
Q Consensus       194 ~sv~~s~~~-~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (446)
                      .+|.|+|+. +-+++++|+|+++|+||+++.+..                                              
T Consensus       152 scvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~----------------------------------------------  185 (315)
T KOG0279|consen  152 SCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLR----------------------------------------------  185 (315)
T ss_pred             EEEEEcCCCCCcEEEEccCCceEEEEccCCcchh----------------------------------------------
Confidence            999999984 346899999999999999864311                                              


Q ss_pred             CCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEE
Q 013274          273 GNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR  352 (446)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~  352 (446)
                                                    ....+|.+.++.+.+||||..+++|+.||.+.+||+..++. +..++.  
T Consensus       186 ------------------------------~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~-lysl~a--  232 (315)
T KOG0279|consen  186 ------------------------------TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN-LYSLEA--  232 (315)
T ss_pred             ------------------------------hccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCce-eEeccC--
Confidence                                          01357889999999999999999999999999999998875 222211  


Q ss_pred             eecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEec----cc-----ccceEEEEEcCCCCEEEEeeCCCcEEEe
Q 013274          353 LQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFR----GH-----YEYVNCCCFSSQDQELYTGGNDRQILVW  423 (446)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~----gH-----~~~v~~~~fSpd~~~lvtgs~D~~v~vW  423 (446)
                        ......++|+|...-+..+....+++||+.++..+.+|.    |-     .-.-..++||+||+.|..|-.|+.|++|
T Consensus       233 --~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~  310 (315)
T KOG0279|consen  233 --FDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVW  310 (315)
T ss_pred             --CCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEE
Confidence              223445788888777777888899999999987765443    22     2234789999999999999999999999


Q ss_pred             CCC
Q 013274          424 CPS  426 (446)
Q Consensus       424 ~~~  426 (446)
                      .+.
T Consensus       311 qv~  313 (315)
T KOG0279|consen  311 QVA  313 (315)
T ss_pred             Eee
Confidence            764

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=8.6e-38  Score=287.34  Aligned_cols=369  Identities=18%  Similarity=0.252  Sum_probs=254.8

Q ss_pred             ceeEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeec
Q 013274           35 YKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV  114 (446)
Q Consensus        35 ~~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~  114 (446)
                      |+..+..|+..|+|++|+| ||.++||+|.||+|.+||.++++..            -.+  ....+|++.|.++.|+| 
T Consensus       182 Fk~s~r~HskFV~~VRysP-DG~~Fat~gsDgki~iyDGktge~v------------g~l--~~~~aHkGsIfalsWsP-  245 (603)
T KOG0318|consen  182 FKSSFREHSKFVNCVRYSP-DGSRFATAGSDGKIYIYDGKTGEKV------------GEL--EDSDAHKGSIFALSWSP-  245 (603)
T ss_pred             eeecccccccceeeEEECC-CCCeEEEecCCccEEEEcCCCccEE------------EEe--cCCCCccccEEEEEECC-
Confidence            3444567999999999997 5789999999999999999887642            111  11358999999999998 


Q ss_pred             CCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeE
Q 013274          115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM  194 (446)
Q Consensus       115 ~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~  194 (446)
                      |+++|+|+|.|+++||||+.+.++++++.+...+....+.+..+ ...|++-+.+|.|-+++...+..++.+.||+..|+
T Consensus       246 Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq-kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~IT  324 (603)
T KOG0318|consen  246 DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ-KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSIT  324 (603)
T ss_pred             CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe-CCeEEEEEcCcEEEEecccCCChhheeccccccee
Confidence            89999999999999999999999999999887765555555555 34677888999999999999999999999999999


Q ss_pred             EEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEe-ecccccccCCCccccccee-ec-----cccccCCCCCcCCCCcc
Q 013274          195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVL-DQSQSQLGRRPPLLKRKVS-IS-----KSLSAGQNSSVKPRAPQ  267 (446)
Q Consensus       195 sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~  267 (446)
                      +++.+|++++ |.||+.||.|.-||+.++.+.+.. +.+..++.+.......... +.     +.+.......... ...
T Consensus       325 aLtv~~d~~~-i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~-~~~  402 (603)
T KOG0318|consen  325 ALTVSPDGKT-IYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKS-EVV  402 (603)
T ss_pred             EEEEcCCCCE-EEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCccccc-cee
Confidence            9999999986 689999999999999887765443 2222222111000000000 00     0000000000000 000


Q ss_pred             ccccCCCceeeccccee--e-cCCccccccC-CCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCce
Q 013274          268 KRSANGNGVRQSSVGRI--P-AKGSVRQRLH-PGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRN  343 (446)
Q Consensus       268 ~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~  343 (446)
                      +......+++..+.+..  . ....+. .+. ......    ..-.-...+++++|++.+++.|+.|+.|++|.+..+..
T Consensus       403 ~lg~QP~~lav~~d~~~avv~~~~~iv-~l~~~~~~~~----~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l  477 (603)
T KOG0318|consen  403 KLGSQPKGLAVLSDGGTAVVACISDIV-LLQDQTKVSS----IPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDEL  477 (603)
T ss_pred             ecCCCceeEEEcCCCCEEEEEecCcEE-EEecCCccee----eccccccceEEEcCCCCEEEEecccceEEEEEecCCcc
Confidence            00111112222222100  0 000000 000 000000    01112367899999999999999999999999986432


Q ss_pred             eeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecc-cccceEEEEEcCCCCEEEEeeCCCcEE
Q 013274          344 TLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRG-HYEYVNCCCFSSQDQELYTGGNDRQIL  421 (446)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~g-H~~~v~~~~fSpd~~~lvtgs~D~~v~  421 (446)
                        .....+..+...+..++++||+.+++++.. ..+.+||+.+++.....-+ |+..|+||+||||+++|||||.|.+|.
T Consensus       478 --~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Vi  555 (603)
T KOG0318|consen  478 --KEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVI  555 (603)
T ss_pred             --cceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEE
Confidence              222222334566778999999999988754 5789999999987654444 999999999999999999999999999


Q ss_pred             EeCCCCCC
Q 013274          422 VWCPSRHI  429 (446)
Q Consensus       422 vW~~~~~~  429 (446)
                      ||+++++.
T Consensus       556 iysv~kP~  563 (603)
T KOG0318|consen  556 IYSVKKPA  563 (603)
T ss_pred             EEEccChh
Confidence            99998764

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=3.8e-37  Score=265.24  Aligned_cols=289  Identities=21%  Similarity=0.358  Sum_probs=230.5

Q ss_pred             eeEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecC
Q 013274           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (446)
Q Consensus        36 ~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~  115 (446)
                      .+.+.+|.|.|+.+.|+| +|..|||||.|..|.+|++.....           ..     ....||+++|..+-+.+ |
T Consensus        40 ~m~l~gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gdce-----------N~-----~~lkgHsgAVM~l~~~~-d  101 (338)
T KOG0265|consen   40 IMLLPGHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGDCE-----------NF-----WVLKGHSGAVMELHGMR-D  101 (338)
T ss_pred             hhhcCCCcceEEEEEECC-CCCeEeecCCcceEEEEecccccc-----------ce-----eeeccccceeEeeeecc-C
Confidence            345679999999999998 789999999999999999754321           01     11249999999988876 8


Q ss_pred             CcEEEEEeCCCeEEEEECCCCeeeEEEecCCc-eEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeE
Q 013274          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK-VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM  194 (446)
Q Consensus       116 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~  194 (446)
                      +..++|+|.|++|+.||.++++.++++..... ++.+.  |...+..++.+|+.|+++++||+++...++++. ..-+++
T Consensus       102 ~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~--p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqlt  178 (338)
T KOG0265|consen  102 GSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLD--PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLT  178 (338)
T ss_pred             CCEEEEecCCceEEEEecccceeeehhccccceeeecC--ccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEE
Confidence            88999999999999999999999988875433 33333  555667899999999999999999988887775 346799


Q ss_pred             EEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCC
Q 013274          195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGN  274 (446)
Q Consensus       195 sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (446)
                      +|.|...+.. +++|+-|+.|++||+|.+.++..                                              
T Consensus       179 Av~f~d~s~q-v~sggIdn~ikvWd~r~~d~~~~----------------------------------------------  211 (338)
T KOG0265|consen  179 AVGFKDTSDQ-VISGGIDNDIKVWDLRKNDGLYT----------------------------------------------  211 (338)
T ss_pred             EEEecccccc-eeeccccCceeeeccccCcceEE----------------------------------------------
Confidence            9999988775 57999999999999997654332                                              


Q ss_pred             ceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCce--e-eeeeeEE
Q 013274          275 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRN--T-LVNFETV  351 (446)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~--~-~~~~~~~  351 (446)
                                                    ..||..+|+.|..+|+|.++.|.+.|.++++||++--.+  . +..++..
T Consensus       212 ------------------------------lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~  261 (338)
T KOG0265|consen  212 ------------------------------LSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGH  261 (338)
T ss_pred             ------------------------------eecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecc
Confidence                                          247888999999999999999999999999999875221  1 1112221


Q ss_pred             EeecC-CCeEEEEcCCCcEEEEeC-CCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEE
Q 013274          352 RLQTS-KPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILV  422 (446)
Q Consensus       352 ~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~v  422 (446)
                      ....+ .....+.+|+...+..+. +..+.+||......+..|+||.+.|++++|+|....|.+|+.|.+|.+
T Consensus       262 ~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  262 IHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL  334 (338)
T ss_pred             hhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence            11111 223456677777665554 457899999999999999999999999999999999999999999876

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=3.6e-37  Score=296.45  Aligned_cols=259  Identities=22%  Similarity=0.419  Sum_probs=211.6

Q ss_pred             cceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcC--CCCCCccccc------------cceEEeccccccCccccEeEE
Q 013274           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATD--YEGGGHIAKH------------RSVFVVDKQHEHGHKYAISSA  109 (446)
Q Consensus        44 ~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~--~~~~~~~~~~------------~~~~~~~~~~~~gh~~~V~~~  109 (446)
                      ..++|..|+ ++++.||.|-.|..|++|.+.....  .+....+...            ...-........||.++|..+
T Consensus       379 ~~v~ca~fS-ddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~  457 (707)
T KOG0263|consen  379 QGVTCAEFS-DDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC  457 (707)
T ss_pred             CcceeEeec-CCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence            468999998 4778999999999999999874210  0000000000            000001112356999999999


Q ss_pred             EEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeC
Q 013274          110 IWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG  188 (446)
Q Consensus       110 ~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~  188 (446)
                      .|+| +..+|+|||.|+++|+|++.+..++..+.. ..++..+.|+|.   +.++|+++.|.+.++|..+...+.+.+.|
T Consensus       458 sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~---GyYFatas~D~tArLWs~d~~~PlRifag  533 (707)
T KOG0263|consen  458 SFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR---GYYFATASHDQTARLWSTDHNKPLRIFAG  533 (707)
T ss_pred             eecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCC---ceEEEecCCCceeeeeecccCCchhhhcc
Confidence            9998 778999999999999999999888877762 334667777765   56999999999999999999999999999


Q ss_pred             CCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccc
Q 013274          189 HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQK  268 (446)
Q Consensus       189 h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (446)
                      |-+.|.|+.|+|+..+ ++|||.|.++|+||..++.+++.|                                       
T Consensus       534 hlsDV~cv~FHPNs~Y-~aTGSsD~tVRlWDv~~G~~VRiF---------------------------------------  573 (707)
T KOG0263|consen  534 HLSDVDCVSFHPNSNY-VATGSSDRTVRLWDVSTGNSVRIF---------------------------------------  573 (707)
T ss_pred             cccccceEEECCcccc-cccCCCCceEEEEEcCCCcEEEEe---------------------------------------
Confidence            9999999999999886 799999999999999988766554                                       


Q ss_pred             cccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeee
Q 013274          269 RSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNF  348 (446)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~  348 (446)
                                                           .||.++|++|+|||+|+||+||+.|+.|++||+.+++      
T Consensus       574 -------------------------------------~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~------  610 (707)
T KOG0263|consen  574 -------------------------------------TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS------  610 (707)
T ss_pred             -------------------------------------cCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc------
Confidence                                                 4789999999999999999999999999999987653      


Q ss_pred             eEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC
Q 013274          349 ETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH  428 (446)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~  428 (446)
                                                             ++.+|.+|++.|.++.||.||..||+||.|++|++||....
T Consensus       611 ---------------------------------------~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  611 ---------------------------------------LVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             ---------------------------------------chhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence                                                   33567899999999999999999999999999999998755


Q ss_pred             C
Q 013274          429 I  429 (446)
Q Consensus       429 ~  429 (446)
                      .
T Consensus       652 ~  652 (707)
T KOG0263|consen  652 I  652 (707)
T ss_pred             c
Confidence            4

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.2e-34  Score=255.90  Aligned_cols=336  Identities=17%  Similarity=0.216  Sum_probs=236.4

Q ss_pred             eEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC
Q 013274           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (446)
Q Consensus        37 ~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~  116 (446)
                      ..+..|+++|++++.+| +.++++|||.|....||++.++...                 ....||+..|+++.|+. ++
T Consensus        58 ~tF~~H~~svFavsl~P-~~~l~aTGGgDD~AflW~~~~ge~~-----------------~eltgHKDSVt~~~Fsh-dg  118 (399)
T KOG0296|consen   58 VTFDKHTDSVFAVSLHP-NNNLVATGGGDDLAFLWDISTGEFA-----------------GELTGHKDSVTCCSFSH-DG  118 (399)
T ss_pred             eehhhcCCceEEEEeCC-CCceEEecCCCceEEEEEccCCcce-----------------eEecCCCCceEEEEEcc-Cc
Confidence            34679999999999998 6789999999999999999877521                 12369999999998876 89


Q ss_pred             cEEEEEeCCCeEEEEECCCCeeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEE
Q 013274          117 GLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT  195 (446)
Q Consensus       117 ~~l~s~s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~s  195 (446)
                      .+||||+.+|.|+||...++.....+.. -+.+..+.++|   ...+|++|+.||++-+|.+.++...+.+.||+.++++
T Consensus       119 tlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp---~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~  195 (399)
T KOG0296|consen  119 TLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHP---RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTC  195 (399)
T ss_pred             eEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecc---cccEEEeecCCCcEEEEECCCcceeeEecCCCCCccc
Confidence            9999999999999999999887766642 23355666666   4458999999999999999998889999999999999


Q ss_pred             EEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCC-
Q 013274          196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGN-  274 (446)
Q Consensus       196 v~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  274 (446)
                      -.|.|+|++ ++++..||+|++||+.++..+..+....   +...+.+....          ...    ........+. 
T Consensus       196 G~f~pdGKr-~~tgy~dgti~~Wn~ktg~p~~~~~~~e---~~~~~~~~~~~----------~~~----~~~~g~~e~~~  257 (399)
T KOG0296|consen  196 GEFIPDGKR-ILTGYDDGTIIVWNPKTGQPLHKITQAE---GLELPCISLNL----------AGS----TLTKGNSEGVA  257 (399)
T ss_pred             ccccCCCce-EEEEecCceEEEEecCCCceeEEecccc---cCcCCcccccc----------ccc----eeEeccCCccE
Confidence            999999997 6899999999999999886654443211   11111000000          000    0000000000 


Q ss_pred             ceeecccceeecCCccccccCCCcccccccccccccCeEEEEEc---cCCCEEEEeecCCcEEEEecCcCceeeeeeeEE
Q 013274          275 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVT---EDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV  351 (446)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs---~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~  351 (446)
                      .+...      ..+.+....++.   .......+...+.+|.|.   ..=.+.|.|+.||+|-|||+.+.+.+.     .
T Consensus       258 ~~~~~------~sgKVv~~~n~~---~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~-----~  323 (399)
T KOG0296|consen  258 CGVNN------GSGKVVNCNNGT---VPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRH-----I  323 (399)
T ss_pred             EEEcc------ccceEEEecCCC---CccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhe-----e
Confidence            00000      011111111110   000112333344455444   444678999999999999998754221     1


Q ss_pred             EeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274          352 RLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS  426 (446)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~  426 (446)
                      -.+....+.+.+-++..++.......+++||..+|.++.++.||...|.+++++||.++++|+|.|++.+|+..+
T Consensus       324 c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  324 CEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             ccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            112345666777774444444445689999999999999999999999999999999999999999999999764

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.4e-35  Score=263.04  Aligned_cols=286  Identities=26%  Similarity=0.394  Sum_probs=213.6

Q ss_pred             cccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecC-CceEEeeeccCCCCceEEEEeeCCCcEEEEe
Q 013274           98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCD  176 (446)
Q Consensus        98 ~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd  176 (446)
                      ...||..+|.|+.|+| ++.+|+|||-|.|+|+||+.+..+..+...+ ..+.+++++|+   ...||+|+.||+|++||
T Consensus       110 S~~GH~e~Vl~~~fsp-~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPD---gk~iASG~~dg~I~lwd  185 (480)
T KOG0271|consen  110 SIAGHGEAVLSVQFSP-TGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPD---GKKIASGSKDGSIRLWD  185 (480)
T ss_pred             ccCCCCCcEEEEEecC-CCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCC---cchhhccccCCeEEEec
Confidence            3469999999999998 8999999999999999999999988766533 34778888875   45899999999999999


Q ss_pred             CCCCce-eeeeeCCCCCeEEEEEecC-----CCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeec
Q 013274          177 IASGAI-SQTLSGHRDGIMTVEWSTS-----SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSIS  250 (446)
Q Consensus       177 ~~~~~~-~~~l~~h~~~v~sv~~s~~-----~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (446)
                      .++|.. ...|++|...|++++|.|-     .+ .|+|+|.||+|+|||+..+.|+..+..+...+..        +.--
T Consensus       186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTC--------vrwG  256 (480)
T KOG0271|consen  186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTC--------VRWG  256 (480)
T ss_pred             CCCCCcccccccCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCceEEEEeccCccceEE--------EEEc
Confidence            999864 5789999999999998764     34 5899999999999999998888877655432210        0000


Q ss_pred             cccccCCCCCcCCCCccccccCCCceeecccceeecCCcccccc-----CCCcccccccccccccCeEEEEEc-------
Q 013274          251 KSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRL-----HPGMLSSQDRATAHYGAVTGLKVT-------  318 (446)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~h~~~v~~l~fs-------  318 (446)
                           +.                 +        +.+.++.+..+     ..+.+.  ..+.+|...|+.|+.+       
T Consensus       257 -----G~-----------------g--------liySgS~DrtIkvw~a~dG~~~--r~lkGHahwvN~lalsTdy~LRt  304 (480)
T KOG0271|consen  257 -----GE-----------------G--------LIYSGSQDRTIKVWRALDGKLC--RELKGHAHWVNHLALSTDYVLRT  304 (480)
T ss_pred             -----CC-----------------c--------eEEecCCCceEEEEEccchhHH--Hhhcccchheeeeeccchhhhhc
Confidence                 00                 0        00000000000     000000  1234555566665554       


Q ss_pred             ----cCC-------------------------CEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcE
Q 013274          319 ----EDG-------------------------MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAV  369 (446)
Q Consensus       319 ----~dg-------------------------~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (446)
                          |.|                         ..|+||+.|.++-+|+....+...   ..+..++.....+.|+||+.+
T Consensus       305 gaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi---~rmtgHq~lVn~V~fSPd~r~  381 (480)
T KOG0271|consen  305 GAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPI---TRMTGHQALVNHVSFSPDGRY  381 (480)
T ss_pred             cccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccch---hhhhchhhheeeEEECCCccE
Confidence                223                         359999999999999976543221   122233445678999999999


Q ss_pred             EEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCCCC
Q 013274          370 VFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISD  431 (446)
Q Consensus       370 ~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~~~  431 (446)
                      +++++. ..|++|+..+|+.+.+|+||-+.|..++||.|.++|||||.|.+++||++.+.++-
T Consensus       382 IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~  444 (480)
T KOG0271|consen  382 IASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLK  444 (480)
T ss_pred             EEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeec
Confidence            999865 58999999999999999999999999999999999999999999999999866543

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=7e-36  Score=268.14  Aligned_cols=255  Identities=22%  Similarity=0.334  Sum_probs=218.1

Q ss_pred             CccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCC
Q 013274          101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS  179 (446)
Q Consensus       101 gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~  179 (446)
                      |-..+|..+.|+ .+++.|+|||++|.+++|+..+...+.++. +.+.+-.+.|+|.. +..-+|+++.||++++|++++
T Consensus       173 gd~rPis~~~fS-~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~-~~~~lat~s~Dgtvklw~~~~  250 (459)
T KOG0272|consen  173 GDTRPISGCSFS-RDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVD-SDLNLATASADGTVKLWKLSQ  250 (459)
T ss_pred             cCCCcceeeEee-cCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCC-CccceeeeccCCceeeeccCC
Confidence            445567665555 489999999999999999999887776665 45567788898874 345689999999999999999


Q ss_pred             CceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCC
Q 013274          180 GAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNS  259 (446)
Q Consensus       180 ~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (446)
                      ..++..|.+|...|..|+|+|+|++ |+|+|.|.+-|+||++++..+-                                
T Consensus       251 e~~l~~l~gH~~RVs~VafHPsG~~-L~TasfD~tWRlWD~~tk~ElL--------------------------------  297 (459)
T KOG0272|consen  251 ETPLQDLEGHLARVSRVAFHPSGKF-LGTASFDSTWRLWDLETKSELL--------------------------------  297 (459)
T ss_pred             CcchhhhhcchhhheeeeecCCCce-eeecccccchhhcccccchhhH--------------------------------
Confidence            9999999999999999999999995 7999999999999998753110                                


Q ss_pred             CcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecC
Q 013274          260 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVE  339 (446)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~  339 (446)
                                                                  ...||...|.+++|.|||..++|||.|..-||||+.
T Consensus       298 --------------------------------------------~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlR  333 (459)
T KOG0272|consen  298 --------------------------------------------LQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLR  333 (459)
T ss_pred             --------------------------------------------hhcccccccceeEecCCCceeeccCccchhheeecc
Confidence                                                        024788899999999999999999999999999999


Q ss_pred             cCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcC-CCCEEEEeeCC
Q 013274          340 SGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS-QDQELYTGGND  417 (446)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSp-d~~~lvtgs~D  417 (446)
                      ++++.+.    +..+......+.++|.+..++.++. +.+++||+...+.+.++++|.+-|+.|.|+| .|.+|+|||.|
T Consensus       334 tgr~im~----L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD  409 (459)
T KOG0272|consen  334 TGRCIMF----LAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYD  409 (459)
T ss_pred             cCcEEEE----ecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccC
Confidence            9987543    2234556778999999999888755 6899999999999999999999999999999 68999999999


Q ss_pred             CcEEEeCCCCCCCCCcCCCcc
Q 013274          418 RQILVWCPSRHISDGVDAGPM  438 (446)
Q Consensus       418 ~~v~vW~~~~~~~~~~~~~~~  438 (446)
                      ++++||...+--+.+.++|-+
T Consensus       410 ~t~kiWs~~~~~~~ksLaGHe  430 (459)
T KOG0272|consen  410 NTVKIWSTRTWSPLKSLAGHE  430 (459)
T ss_pred             cceeeecCCCcccchhhcCCc
Confidence            999999999888888888854

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=5.7e-34  Score=239.54  Aligned_cols=284  Identities=20%  Similarity=0.263  Sum_probs=220.5

Q ss_pred             CCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCC
Q 013274           56 ERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNC  135 (446)
Q Consensus        56 ~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~  135 (446)
                      .-+|||+|-|.+||+|...+|.++..              .++   ..+.|..+...| +.+.||+|+.. .||+||+++
T Consensus        10 ~viLvsA~YDhTIRfWqa~tG~C~rT--------------iqh---~dsqVNrLeiTp-dk~~LAaa~~q-hvRlyD~~S   70 (311)
T KOG0315|consen   10 PVILVSAGYDHTIRFWQALTGICSRT--------------IQH---PDSQVNRLEITP-DKKDLAAAGNQ-HVRLYDLNS   70 (311)
T ss_pred             ceEEEeccCcceeeeeehhcCeEEEE--------------Eec---CccceeeEEEcC-CcchhhhccCC-eeEEEEccC
Confidence            46899999999999999988876421              111   124577777776 77788888875 699999987


Q ss_pred             Ce--eeEEEecC-CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCC
Q 013274          136 TR--VVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCD  212 (446)
Q Consensus       136 ~~--~~~~~~~~-~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~D  212 (446)
                      +.  ++.+|..+ ..+..+.|..+   +....+|+.||+++|||++...+.+.++ |..+|.+|...|+... |++|..+
T Consensus        71 ~np~Pv~t~e~h~kNVtaVgF~~d---grWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQte-Lis~dqs  145 (311)
T KOG0315|consen   71 NNPNPVATFEGHTKNVTAVGFQCD---GRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTE-LISGDQS  145 (311)
T ss_pred             CCCCceeEEeccCCceEEEEEeec---CeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcce-EEeecCC
Confidence            65  57777654 66888888875   4589999999999999999966655554 7799999999998764 7899999


Q ss_pred             CcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCcccc
Q 013274          213 GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQ  292 (446)
Q Consensus       213 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (446)
                      |.|++||++...|-..+.                                                              
T Consensus       146 g~irvWDl~~~~c~~~li--------------------------------------------------------------  163 (311)
T KOG0315|consen  146 GNIRVWDLGENSCTHELI--------------------------------------------------------------  163 (311)
T ss_pred             CcEEEEEccCCccccccC--------------------------------------------------------------
Confidence            999999998754421110                                                              


Q ss_pred             ccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCce--eeeeeeEEEeecCCCeEEEEcCCCcEE
Q 013274          293 RLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRN--TLVNFETVRLQTSKPIQLATTQDPAVV  370 (446)
Q Consensus       293 ~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (446)
                                   ..-.-+|.++...|||++|+.+...|++.+|++-+...  .+..+..+..+........++|+..++
T Consensus       164 -------------Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~l  230 (311)
T KOG0315|consen  164 -------------PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYL  230 (311)
T ss_pred             -------------CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEE
Confidence                         00013488999999999999999999999999987431  223333344455667778899999988


Q ss_pred             EEeCC-CceEEEEeecC-ceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCCCCCcCCCcc
Q 013274          371 FVPCM-TAVKAFDIWSG-KTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVDAGPM  438 (446)
Q Consensus       371 ~~~~~-~~~~~~d~~~~-~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~~~~~~~~~~  438 (446)
                      +..+. ..+++|...+. ++-..+.||..++++++||.|+++|+|||.|+++|+|+++..+--+.-+|..
T Consensus       231 at~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~  300 (311)
T KOG0315|consen  231 ATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHH  300 (311)
T ss_pred             EeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcc
Confidence            87654 58999999887 6667899999999999999999999999999999999998776444444443

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=4.3e-34  Score=240.27  Aligned_cols=234  Identities=21%  Similarity=0.389  Sum_probs=189.1

Q ss_pred             cEEEEEeCCCeEEEEECCCCeeeEEEecC-CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc--eeeeeeCCCCCe
Q 013274          117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA--ISQTLSGHRDGI  193 (446)
Q Consensus       117 ~~l~s~s~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~--~~~~l~~h~~~v  193 (446)
                      -+|+|+|+|.+||+|...+|.+.++++++ ++++++.++|+..   .||+++ .-.|++||+++++  ++.++.+|++.|
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~---~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNV   86 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKK---DLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNV   86 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcc---hhhhcc-CCeeEEEEccCCCCCceeEEeccCCce
Confidence            48999999999999999999999999975 5689999988643   455554 4579999999875  688999999999


Q ss_pred             EEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCC
Q 013274          194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANG  273 (446)
Q Consensus       194 ~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (446)
                      ++|.|.-+++| ++|||+||++||||+|...|.+.                                             
T Consensus        87 taVgF~~dgrW-MyTgseDgt~kIWdlR~~~~qR~---------------------------------------------  120 (311)
T KOG0315|consen   87 TAVGFQCDGRW-MYTGSEDGTVKIWDLRSLSCQRN---------------------------------------------  120 (311)
T ss_pred             EEEEEeecCeE-EEecCCCceEEEEeccCcccchh---------------------------------------------
Confidence            99999999998 79999999999999997543222                                             


Q ss_pred             CceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEe
Q 013274          274 NGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRL  353 (446)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~  353 (446)
                                                      ..|..+|++|..+|+...|++|..+|.|++||+.+.........   .
T Consensus       121 --------------------------------~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liP---e  165 (311)
T KOG0315|consen  121 --------------------------------YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIP---E  165 (311)
T ss_pred             --------------------------------ccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCC---C
Confidence                                            13457799999999999999999999999999987533221111   1


Q ss_pred             ecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecC------ceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274          354 QTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSG------KTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS  426 (446)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~------~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~  426 (446)
                      .......+...+|+.+++.+.. +.+.+|++...      +++..|+.|++.++.+.||||+++|||||+|.+++||+.+
T Consensus       166 ~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~  245 (311)
T KOG0315|consen  166 DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTD  245 (311)
T ss_pred             CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecC
Confidence            1123445777889888877654 68999998664      3456899999999999999999999999999999999998


Q ss_pred             CC-CCCCcCC
Q 013274          427 RH-ISDGVDA  435 (446)
Q Consensus       427 ~~-~~~~~~~  435 (446)
                      .- +++.++.
T Consensus       246 ~~~kle~~l~  255 (311)
T KOG0315|consen  246 DFFKLELVLT  255 (311)
T ss_pred             CceeeEEEee
Confidence            66 3443333

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1e-33  Score=249.25  Aligned_cols=290  Identities=22%  Similarity=0.365  Sum_probs=224.2

Q ss_pred             cceeEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEee
Q 013274           34 NYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYP  113 (446)
Q Consensus        34 ~~~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~  113 (446)
                      ....|+++|.|=|.|+++.| .+.+++|||.|++|+|||+.++...                 .+..||...|..+++++
T Consensus       142 Kl~rVi~gHlgWVr~vavdP-~n~wf~tgs~DrtikIwDlatg~Lk-----------------ltltGhi~~vr~vavS~  203 (460)
T KOG0285|consen  142 KLYRVISGHLGWVRSVAVDP-GNEWFATGSADRTIKIWDLATGQLK-----------------LTLTGHIETVRGVAVSK  203 (460)
T ss_pred             eehhhhhhccceEEEEeeCC-CceeEEecCCCceeEEEEcccCeEE-----------------Eeecchhheeeeeeecc
Confidence            34567899999999999997 5789999999999999999987531                 23468999999998886


Q ss_pred             cCCcEEEEEeCCCeEEEEECCCCeeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCC
Q 013274          114 VDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDG  192 (446)
Q Consensus       114 ~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~  192 (446)
                       ...++.+++.|+.|+.||++..+.++.+.. -..++++..+|.   ..+|++|+.|..++|||+++...+..+.||..+
T Consensus       204 -rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPT---ldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~  279 (460)
T KOG0285|consen  204 -RHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPT---LDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNP  279 (460)
T ss_pred             -cCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEecccc---ceeEEecCCcceEEEeeecccceEEEecCCCCc
Confidence             456999999999999999999998886642 234677777764   458999999999999999999999999999999


Q ss_pred             eEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccC
Q 013274          193 IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSAN  272 (446)
Q Consensus       193 v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (446)
                      |.+|.+.|-+.. ++|||.|++|++||++.++....                                            
T Consensus       280 V~~V~~~~~dpq-vit~S~D~tvrlWDl~agkt~~t--------------------------------------------  314 (460)
T KOG0285|consen  280 VASVMCQPTDPQ-VITGSHDSTVRLWDLRAGKTMIT--------------------------------------------  314 (460)
T ss_pred             ceeEEeecCCCc-eEEecCCceEEEeeeccCceeEe--------------------------------------------
Confidence            999999987775 68999999999999987653211                                            


Q ss_pred             CCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEE
Q 013274          273 GNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR  352 (446)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~  352 (446)
                                                      ...|.-.|++++.+|....++|++.|. |+-|++..+.- +.++   .
T Consensus       315 --------------------------------lt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f-~~nl---s  357 (460)
T KOG0285|consen  315 --------------------------------LTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEF-LQNL---S  357 (460)
T ss_pred             --------------------------------eecccceeeEEecCCchhhhhccCCcc-ceeccCCccch-hhcc---c
Confidence                                            124566799999999999999999885 99999987632 1111   1


Q ss_pred             eecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEe-----cc---cccceEEEEEcCCCCEEEEeeCCCcEEEe
Q 013274          353 LQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTF-----RG---HYEYVNCCCFSSQDQELYTGGNDRQILVW  423 (446)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l-----~g---H~~~v~~~~fSpd~~~lvtgs~D~~v~vW  423 (446)
                      .+......++.. +..++++++. ..+-.||-.+|-....+     +|   -+..|++.+|-..+..|+||..|.+|++|
T Consensus       358 gh~~iintl~~n-sD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~  436 (460)
T KOG0285|consen  358 GHNAIINTLSVN-SDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMY  436 (460)
T ss_pred             cccceeeeeeec-cCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEE
Confidence            111122223333 3445555544 46778888776543322     12   24568999999999999999999999999


Q ss_pred             CCCCC
Q 013274          424 CPSRH  428 (446)
Q Consensus       424 ~~~~~  428 (446)
                      .-+.+
T Consensus       437 keDe~  441 (460)
T KOG0285|consen  437 KEDEH  441 (460)
T ss_pred             ecccc
Confidence            66544

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=1.6e-34  Score=242.85  Aligned_cols=285  Identities=22%  Similarity=0.346  Sum_probs=228.3

Q ss_pred             eEeCCCccceeEEEeecC--CCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeec
Q 013274           37 EIVSPHKGSINSLQVDLT--EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV  114 (446)
Q Consensus        37 ~~~~~H~~~v~~l~~s~~--~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~  114 (446)
                      .+..+|+.+|-.|+|||-  +|-+|+|++.|+.-.+-+.+++...                 .++.||+++|++..... 
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwi-----------------gtfeghkgavw~~~l~~-   69 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWI-----------------GTFEGHKGAVWSATLNK-   69 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcE-----------------EeeeccCcceeeeecCc-
Confidence            356799999999999853  5789999999999999988887652                 24579999999876653 


Q ss_pred             CCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC-ceeeeeeCCCCCe
Q 013274          115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AISQTLSGHRDGI  193 (446)
Q Consensus       115 ~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~-~~~~~l~~h~~~v  193 (446)
                      +..+.||++.|.+.++||.-++..+..|.+...+..++|+.+   ...|++|+.+..++|||++.. .++..+.+|.+.|
T Consensus        70 na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~d---s~~lltgg~ekllrvfdln~p~App~E~~ghtg~I  146 (334)
T KOG0278|consen   70 NATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQD---SNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGI  146 (334)
T ss_pred             hhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEeccc---chhhhccchHHHhhhhhccCCCCCchhhcCCCCcc
Confidence            666789999999999999999999999988777777888764   457899999999999999877 4788999999999


Q ss_pred             EEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCC
Q 013274          194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANG  273 (446)
Q Consensus       194 ~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (446)
                      ..+-|....+. ++|++.|++||+||.|++..++++.                                           
T Consensus       147 r~v~wc~eD~~-iLSSadd~tVRLWD~rTgt~v~sL~-------------------------------------------  182 (334)
T KOG0278|consen  147 RTVLWCHEDKC-ILSSADDKTVRLWDHRTGTEVQSLE-------------------------------------------  182 (334)
T ss_pred             eeEEEeccCce-EEeeccCCceEEEEeccCcEEEEEe-------------------------------------------
Confidence            99999988775 6788999999999999987655442                                           


Q ss_pred             CceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEe
Q 013274          274 NGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRL  353 (446)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~  353 (446)
                                                        -..+|+++-+++||.+|. .+..+.|++||..+-..    +...+.
T Consensus       183 ----------------------------------~~s~VtSlEvs~dG~ilT-ia~gssV~Fwdaksf~~----lKs~k~  223 (334)
T KOG0278|consen  183 ----------------------------------FNSPVTSLEVSQDGRILT-IAYGSSVKFWDAKSFGL----LKSYKM  223 (334)
T ss_pred             ----------------------------------cCCCCcceeeccCCCEEE-EecCceeEEeccccccc----eeeccC
Confidence                                              123588899999998775 45677899999876321    111111


Q ss_pred             ecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEe-cccccceEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274          354 QTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTF-RGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS  426 (446)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l-~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~  426 (446)
                       +-....+.+.|+..+++.+.. ..+..+|..+++....+ .||-++|.||.|||||...++||.||+||||...
T Consensus       224 -P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~  297 (334)
T KOG0278|consen  224 -PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTT  297 (334)
T ss_pred             -ccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEec
Confidence             112234566777755544433 36788999999998886 9999999999999999999999999999999664

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=3.8e-34  Score=261.17  Aligned_cols=291  Identities=19%  Similarity=0.291  Sum_probs=241.2

Q ss_pred             EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (446)
Q Consensus        38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~  117 (446)
                      ..++|+..|++++|.|..+.+|+|+|.|+.|+|||+.....     .           .++..||..+|.++.|+. ++.
T Consensus       209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~-----~-----------lrtf~gH~k~Vrd~~~s~-~g~  271 (503)
T KOG0282|consen  209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRR-----C-----------LRTFKGHRKPVRDASFNN-CGT  271 (503)
T ss_pred             eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcc-----e-----------ehhhhcchhhhhhhhccc-cCC
Confidence            46799999999999886789999999999999999865211     0           135579999999999886 889


Q ss_pred             EEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEE
Q 013274          118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVE  197 (446)
Q Consensus       118 ~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~  197 (446)
                      .|+|+|.|+.|++||+++|+++..+......+++.+.|+.  +..+++|..|+.|+.||+++++.++.+..|-+.|..+.
T Consensus       272 ~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~--~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~  349 (503)
T KOG0282|consen  272 SFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDN--QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDIT  349 (503)
T ss_pred             eeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCC--CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeE
Confidence            9999999999999999999999999988888999999875  56899999999999999999999999999999999999


Q ss_pred             EecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCcee
Q 013274          198 WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVR  277 (446)
Q Consensus       198 ~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (446)
                      |-+++++ ++|++.|++++||+.+....++.+.                                               
T Consensus       350 F~~~g~r-FissSDdks~riWe~~~~v~ik~i~-----------------------------------------------  381 (503)
T KOG0282|consen  350 FVDEGRR-FISSSDDKSVRIWENRIPVPIKNIA-----------------------------------------------  381 (503)
T ss_pred             EccCCce-EeeeccCccEEEEEcCCCccchhhc-----------------------------------------------
Confidence            9999986 7899999999999987543211100                                               


Q ss_pred             ecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCce--eeeeeeEEEeec
Q 013274          278 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRN--TLVNFETVRLQT  355 (446)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~--~~~~~~~~~~~~  355 (446)
                                                ....|.  ..+|..+|++++++.-+.|+.|.++.+...-.  .-..|+. ....
T Consensus       382 --------------------------~~~~hs--mP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feG-h~va  432 (503)
T KOG0282|consen  382 --------------------------DPEMHT--MPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEG-HSVA  432 (503)
T ss_pred             --------------------------chhhcc--CcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcc-eecc
Confidence                                      001232  56788899999999999999999998653210  0001221 1235


Q ss_pred             CCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCC-CCEEEEeeCCCcEEEeC
Q 013274          356 SKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQ-DQELYTGGNDRQILVWC  424 (446)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd-~~~lvtgs~D~~v~vW~  424 (446)
                      +..+.+.|+||+.+++++.. +.+..||-.+-+++..+.+|.+.+..+.|+|. ...|||||.||.|++|+
T Consensus       433 Gys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  433 GYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             CceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            67788999999999999855 67899999999999999999999999999997 46799999999999996

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.9e-32  Score=259.72  Aligned_cols=300  Identities=22%  Similarity=0.334  Sum_probs=225.7

Q ss_pred             EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (446)
Q Consensus        38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~  117 (446)
                      ...+|...|.+|.|+ +|.++|++||.|-+++||.++..+..               ....+.||+..|.++.| ..+..
T Consensus       140 ~~~g~fddi~si~Ws-~DSr~l~~gsrD~s~rl~~v~~~k~~---------------~~~~l~gHkd~VvacfF-~~~~~  202 (893)
T KOG0291|consen  140 TYLGHFDDITSIDWS-DDSRLLVTGSRDLSARLFGVDGNKNL---------------FTYALNGHKDYVVACFF-GANSL  202 (893)
T ss_pred             eecCCccceeEEEec-cCCceEEeccccceEEEEEecccccc---------------ceEeccCCCcceEEEEe-ccCcc
Confidence            456899999999998 57899999999999999998754321               01234699999977555 45778


Q ss_pred             EEEEEeCCCeEEEEECCC-----------------------Cee---------eEEEecC---CceEEeeeccC------
Q 013274          118 LFVTGSYDHYVKVWDTNC-----------------------TRV---------VMNFKMP---GKVYRTAMSPL------  156 (446)
Q Consensus       118 ~l~s~s~D~~i~iWd~~~-----------------------~~~---------~~~~~~~---~~~~~~~~~~~------  156 (446)
                      .++|-+.||.+.+|....                       ++.         .+.+-+.   .++.+.++++-      
T Consensus       203 ~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvv  282 (893)
T KOG0291|consen  203 DLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVV  282 (893)
T ss_pred             eEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEE
Confidence            899999999999997540                       000         0000010   11111111110      


Q ss_pred             ---------------------------------CCCceEEEEeeC-CCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCC
Q 013274          157 ---------------------------------AASHMLIAAGTE-DVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSS  202 (446)
Q Consensus       157 ---------------------------------~~~~~~lasgs~-d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~  202 (446)
                                                       ...+..||.|+. =|.+-||+..+..++....||...+.+++++|||
T Consensus       283 gFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDg  362 (893)
T KOG0291|consen  283 GFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDG  362 (893)
T ss_pred             EecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCC
Confidence                                             011234566654 3688899998888888889999999999999999


Q ss_pred             CeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccc
Q 013274          203 EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVG  282 (446)
Q Consensus       203 ~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (446)
                      +. +|||+.||.||+||.+.+-|+-++                                                     
T Consensus       363 q~-iaTG~eDgKVKvWn~~SgfC~vTF-----------------------------------------------------  388 (893)
T KOG0291|consen  363 QL-IATGAEDGKVKVWNTQSGFCFVTF-----------------------------------------------------  388 (893)
T ss_pred             cE-EEeccCCCcEEEEeccCceEEEEe-----------------------------------------------------
Confidence            85 799999999999999887776544                                                     


Q ss_pred             eeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCC---e
Q 013274          283 RIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKP---I  359 (446)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~---~  359 (446)
                                             ..|.+.|+++.|+..|+.|++.+-||+||.||+...++    |.+..  ...+   .
T Consensus       389 -----------------------teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN----fRTft--~P~p~Qfs  439 (893)
T KOG0291|consen  389 -----------------------TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN----FRTFT--SPEPIQFS  439 (893)
T ss_pred             -----------------------ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce----eeeec--CCCceeee
Confidence                                   24677899999999999999999999999999987654    33322  1222   3


Q ss_pred             EEEEcCCCcEEEEeCCC--ceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC--CCCCcCC
Q 013274          360 QLATTQDPAVVFVPCMT--AVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH--ISDGVDA  435 (446)
Q Consensus       360 ~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~--~~~~~~~  435 (446)
                      .++..|.+.++..++.+  .+.+|++.+|+++-.|.||+++|.+++|+|++..|||+|+|.|||+|+.=..  ..+.+..
T Consensus       440 cvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i  519 (893)
T KOG0291|consen  440 CVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEI  519 (893)
T ss_pred             EEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEee
Confidence            45666778888777664  7899999999999999999999999999999999999999999999987432  4444444


Q ss_pred             Cc
Q 013274          436 GP  437 (446)
Q Consensus       436 ~~  437 (446)
                      -.
T Consensus       520 ~s  521 (893)
T KOG0291|consen  520 RS  521 (893)
T ss_pred             cc
Confidence            33

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=2.1e-31  Score=246.31  Aligned_cols=283  Identities=25%  Similarity=0.468  Sum_probs=227.3

Q ss_pred             eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (446)
Q Consensus        39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~  118 (446)
                      +++|.+.|++++|+| ++++|++++.||.|++||+.+....                 ....+|...+..+.+.+ +++.
T Consensus         5 ~~~h~~~i~~~~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~-----------------~~~~~~~~~i~~~~~~~-~~~~   65 (289)
T cd00200           5 LKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELL-----------------RTLKGHTGPVRDVAASA-DGTY   65 (289)
T ss_pred             hcccCCCEEEEEEcC-CCCEEEEeecCcEEEEEEeeCCCcE-----------------EEEecCCcceeEEEECC-CCCE
Confidence            568999999999997 5789999999999999998764311                 11246777787888887 5679


Q ss_pred             EEEEeCCCeEEEEECCCCeeeEEEecC-CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEE
Q 013274          119 FVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVE  197 (446)
Q Consensus       119 l~s~s~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~  197 (446)
                      +++++.|+.|++||+.+++.+..+... ..+..+.+.+.   ..++++++.|+.|++||+++++....+..|...+.++.
T Consensus        66 l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~  142 (289)
T cd00200          66 LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPD---GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVA  142 (289)
T ss_pred             EEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCC---CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEE
Confidence            999999999999999987666666533 35677777764   45777877899999999999988888999999999999


Q ss_pred             EecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCcee
Q 013274          198 WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVR  277 (446)
Q Consensus       198 ~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (446)
                      |+|++. ++++++.|+.|++||+++++....+                                                
T Consensus       143 ~~~~~~-~l~~~~~~~~i~i~d~~~~~~~~~~------------------------------------------------  173 (289)
T cd00200         143 FSPDGT-FVASSSQDGTIKLWDLRTGKCVATL------------------------------------------------  173 (289)
T ss_pred             EcCcCC-EEEEEcCCCcEEEEEccccccceeE------------------------------------------------
Confidence            999866 4677777999999998754322111                                                


Q ss_pred             ecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCC
Q 013274          278 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK  357 (446)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~  357 (446)
                                                  ..|.+.+.++.|+|++..+++++.|+.|++||+.+++...    ........
T Consensus       174 ----------------------------~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~----~~~~~~~~  221 (289)
T cd00200         174 ----------------------------TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLG----TLRGHENG  221 (289)
T ss_pred             ----------------------------ecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceec----chhhcCCc
Confidence                                        1345578999999999999999999999999998754311    11112334


Q ss_pred             CeEEEEcCCCcEEEEeC-CCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeC
Q 013274          358 PIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC  424 (446)
Q Consensus       358 ~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~  424 (446)
                      ...+.+.+++.+++++. ...+++|++.+++....+.+|...|.+++|+|++++|++++.|+.|++|+
T Consensus       222 i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         222 VNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             eEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            55677888877777776 67899999999999999999999999999999999999999999999996

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-32  Score=233.78  Aligned_cols=247  Identities=20%  Similarity=0.344  Sum_probs=193.9

Q ss_pred             eEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC
Q 013274           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (446)
Q Consensus        37 ~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~  116 (446)
                      +.++||+..|+.+..++ ++++.+|+|.|+++++||+.+++..                 +.+.||...|.++++++ |.
T Consensus        57 r~~~GHsH~v~dv~~s~-dg~~alS~swD~~lrlWDl~~g~~t-----------------~~f~GH~~dVlsva~s~-dn  117 (315)
T KOG0279|consen   57 RRLTGHSHFVSDVVLSS-DGNFALSASWDGTLRLWDLATGEST-----------------RRFVGHTKDVLSVAFST-DN  117 (315)
T ss_pred             eeeeccceEecceEEcc-CCceEEeccccceEEEEEecCCcEE-----------------EEEEecCCceEEEEecC-CC
Confidence            34789999999999986 7899999999999999999876431                 23459999999999987 77


Q ss_pred             cEEEEEeCCCeEEEEECCCCeeeEEEec---CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCe
Q 013274          117 GLFVTGSYDHYVKVWDTNCTRVVMNFKM---PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI  193 (446)
Q Consensus       117 ~~l~s~s~D~~i~iWd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v  193 (446)
                      .+++|||.|++|++|++.... ..+...   .+.+.++.|+|.. +..+|++++.|+.|++||+++-+....+.||++.+
T Consensus       118 ~qivSGSrDkTiklwnt~g~c-k~t~~~~~~~~WVscvrfsP~~-~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v  195 (315)
T KOG0279|consen  118 RQIVSGSRDKTIKLWNTLGVC-KYTIHEDSHREWVSCVRFSPNE-SNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYV  195 (315)
T ss_pred             ceeecCCCcceeeeeeecccE-EEEEecCCCcCcEEEEEEcCCC-CCcEEEEccCCceEEEEccCCcchhhccccccccE
Confidence            799999999999999987543 333332   3457888888864 35689999999999999999999999999999999


Q ss_pred             EEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCC
Q 013274          194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANG  273 (446)
Q Consensus       194 ~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (446)
                      +.+++||||.. .++|+.||.+.+||++.+++++.+                                            
T Consensus       196 ~t~~vSpDGsl-casGgkdg~~~LwdL~~~k~lysl--------------------------------------------  230 (315)
T KOG0279|consen  196 NTVTVSPDGSL-CASGGKDGEAMLWDLNEGKNLYSL--------------------------------------------  230 (315)
T ss_pred             EEEEECCCCCE-EecCCCCceEEEEEccCCceeEec--------------------------------------------
Confidence            99999999984 689999999999999987765443                                            


Q ss_pred             CceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEE--
Q 013274          274 NGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV--  351 (446)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~--  351 (446)
                                                       +|...|.+++|+|+.-.|+.+. +..|+|||++++.... .+...  
T Consensus       231 ---------------------------------~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~-~l~~d~~  275 (315)
T KOG0279|consen  231 ---------------------------------EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVE-ELKLDGI  275 (315)
T ss_pred             ---------------------------------cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhh-hcccccc
Confidence                                             3456799999999887776554 5569999999865311 11100  


Q ss_pred             --EeecCCC--eEEEEcCCCcEEEEeC-CCceEEEEee
Q 013274          352 --RLQTSKP--IQLATTQDPAVVFVPC-MTAVKAFDIW  384 (446)
Q Consensus       352 --~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~d~~  384 (446)
                        ......+  ..++.++++..+|.+- .+.+++|.+.
T Consensus       276 g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  276 GPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             ccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence              0111122  3467888999998874 4678888774

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.5e-33  Score=270.10  Aligned_cols=207  Identities=26%  Similarity=0.500  Sum_probs=178.2

Q ss_pred             eeEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecC
Q 013274           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (446)
Q Consensus        36 ~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~  115 (446)
                      .+.+.||+|+|+.++|+| +.++|+|+|+|++||+|.+.+....             +.    ..||..+|+.+.|.| .
T Consensus       444 ~~~L~GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~-------------V~----y~GH~~PVwdV~F~P-~  504 (707)
T KOG0263|consen  444 SRTLYGHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCL-------------VI----YKGHLAPVWDVQFAP-R  504 (707)
T ss_pred             eEEeecCCCceeeeeecc-cccceeeccCCcceeeeecccceeE-------------EE----ecCCCcceeeEEecC-C
Confidence            445789999999999997 6789999999999999999876431             11    149999999999886 7


Q ss_pred             CcEEEEEeCCCeEEEEECCCCeeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeE
Q 013274          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM  194 (446)
Q Consensus       116 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~  194 (446)
                      |-+|||||.|++.++|..+..++++.+.. -+.+.++.|+|   +..++|+||.|.+|++||+.+|..++.|.||.++|.
T Consensus       505 GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHP---Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~  581 (707)
T KOG0263|consen  505 GYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHP---NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVT  581 (707)
T ss_pred             ceEEEecCCCceeeeeecccCCchhhhcccccccceEEECC---cccccccCCCCceEEEEEcCCCcEEEEecCCCCceE
Confidence            88999999999999999998888876653 23466677776   567999999999999999999999999999999999


Q ss_pred             EEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCC
Q 013274          195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGN  274 (446)
Q Consensus       195 sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (446)
                      +++|||+|++ |+||+.||.|++||+.++..+.                                               
T Consensus       582 al~~Sp~Gr~-LaSg~ed~~I~iWDl~~~~~v~-----------------------------------------------  613 (707)
T KOG0263|consen  582 ALAFSPCGRY-LASGDEDGLIKIWDLANGSLVK-----------------------------------------------  613 (707)
T ss_pred             EEEEcCCCce-EeecccCCcEEEEEcCCCcchh-----------------------------------------------
Confidence            9999999986 7999999999999998653211                                               


Q ss_pred             ceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcC
Q 013274          275 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG  341 (446)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~  341 (446)
                                                   ...+|.+.|.+|.||.||..||+||.|.+|++||+...
T Consensus       614 -----------------------------~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  614 -----------------------------QLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             -----------------------------hhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence                                         13478888999999999999999999999999998764

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.2e-33  Score=244.16  Aligned_cols=297  Identities=18%  Similarity=0.284  Sum_probs=227.5

Q ss_pred             eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (446)
Q Consensus        39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~  118 (446)
                      +.+|-.+|+.+-|.| ...++++++.|++|++||..+++..                 ....||..+|..+.+.. .|++
T Consensus       104 l~g~r~~vt~v~~hp-~~~~v~~as~d~tikv~D~~tg~~e-----------------~~LrGHt~sv~di~~~a-~Gk~  164 (406)
T KOG0295|consen  104 LAGHRSSVTRVIFHP-SEALVVSASEDATIKVFDTETGELE-----------------RSLRGHTDSVFDISFDA-SGKY  164 (406)
T ss_pred             hhccccceeeeeecc-CceEEEEecCCceEEEEEccchhhh-----------------hhhhccccceeEEEEec-CccE
Confidence            346889999999987 4568999999999999999887641                 23469999999988876 6899


Q ss_pred             EEEEeCCCeEEEEECCCC-eeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEE
Q 013274          119 FVTGSYDHYVKVWDTNCT-RVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTV  196 (446)
Q Consensus       119 l~s~s~D~~i~iWd~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv  196 (446)
                      ++|+|.|-.+++||..+. ++++.... ...+.++.+-|.+   .++++++.|.+|++|++.++-++.++.+|..-|..+
T Consensus       165 l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~g---d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v  241 (406)
T KOG0295|consen  165 LATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLG---DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMV  241 (406)
T ss_pred             EEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecC---CeeeecccccceeEEecccceeEEeccCchHhEEEE
Confidence            999999999999998762 33333322 2235566677654   589999999999999999999999999999999999


Q ss_pred             EEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCce
Q 013274          197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGV  276 (446)
Q Consensus       197 ~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (446)
                      +.+.|+. +++|++.|.++++|-+.+..|...+......+.        +                             +
T Consensus       242 ~v~~DGt-i~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vE--------c-----------------------------i  283 (406)
T KOG0295|consen  242 RVNQDGT-IIASCSNDQTLRVWVVATKQCKAELREHEHPVE--------C-----------------------------I  283 (406)
T ss_pred             EecCCee-EEEecCCCceEEEEEeccchhhhhhhccccceE--------E-----------------------------E
Confidence            9998886 789999999999998877655433322111110        0                             0


Q ss_pred             eecccceeecCCccccccCCCcccccccccccccCeEEEEEc-cCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeec
Q 013274          277 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVT-EDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT  355 (446)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~  355 (446)
                      ++.+...+                         ..|+.-.-+ ..|.++.+++.|++||+||+.++...+    ++..+.
T Consensus       284 ~wap~~~~-------------------------~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~----tL~ghd  334 (406)
T KOG0295|consen  284 AWAPESSY-------------------------PSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLF----TLVGHD  334 (406)
T ss_pred             EecccccC-------------------------cchhhccCCCCCccEEEeecccceEEEEeccCCeEEE----EEeccc
Confidence            00000000                         000000000 135799999999999999999986533    333344


Q ss_pred             CCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeC
Q 013274          356 SKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC  424 (446)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~  424 (446)
                      +..-.++++|.+.++++.++ .++++||+.++++++++..|+.-|+++.|..+--+++|||-|++++||.
T Consensus       335 nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  335 NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence            55667899999999998766 5899999999999999999999999999999999999999999999995

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.8e-33  Score=266.21  Aligned_cols=251  Identities=25%  Similarity=0.448  Sum_probs=207.3

Q ss_pred             eEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC
Q 013274           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (446)
Q Consensus        37 ~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~  116 (446)
                      .++.||+..|.+|.... .|.+|+|||.|.+|++|.++++....        -+     -....||...|.+++.+-...
T Consensus       359 ~ii~GH~e~vlSL~~~~-~g~llat~sKD~svilWr~~~~~~~~--------~~-----~a~~~gH~~svgava~~~~~a  424 (775)
T KOG0319|consen  359 QIIPGHTEAVLSLDVWS-SGDLLATGSKDKSVILWRLNNNCSKS--------LC-----VAQANGHTNSVGAVAGSKLGA  424 (775)
T ss_pred             EEEeCchhheeeeeecc-cCcEEEEecCCceEEEEEecCCcchh--------hh-----hhhhcccccccceeeecccCc
Confidence            37889999999999543 46899999999999999885543210        01     112358999999998866566


Q ss_pred             cEEEEEeCCCeEEEEECCCCeee---EEE-------ecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeee
Q 013274          117 GLFVTGSYDHYVKVWDTNCTRVV---MNF-------KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL  186 (446)
Q Consensus       117 ~~l~s~s~D~~i~iWd~~~~~~~---~~~-------~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l  186 (446)
                      ..|+|+|.|+++++|++...+..   ..+       .+...+++++++|   +..++|+||.|.+.+||+++......+|
T Consensus       425 sffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~---ndkLiAT~SqDktaKiW~le~~~l~~vL  501 (775)
T KOG0319|consen  425 SFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP---NDKLIATGSQDKTAKIWDLEQLRLLGVL  501 (775)
T ss_pred             cEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC---CCceEEecccccceeeecccCceEEEEe
Confidence            79999999999999998652111   111       1234577888877   5579999999999999999988999999


Q ss_pred             eCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCc
Q 013274          187 SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAP  266 (446)
Q Consensus       187 ~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (446)
                      .||.-.|++|.|+|.++ +++|+|.|++||||.+.+..|+++|                                     
T Consensus       502 sGH~RGvw~V~Fs~~dq-~laT~SgD~TvKIW~is~fSClkT~-------------------------------------  543 (775)
T KOG0319|consen  502 SGHTRGVWCVSFSKNDQ-LLATCSGDKTVKIWSISTFSCLKTF-------------------------------------  543 (775)
T ss_pred             eCCccceEEEEeccccc-eeEeccCCceEEEEEeccceeeeee-------------------------------------
Confidence            99999999999999987 5899999999999999988887665                                     


Q ss_pred             cccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeee
Q 013274          267 QKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLV  346 (446)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~  346 (446)
                                                             .||...|..+.|-.+|+.|+|+++||-+|+|+++++.    
T Consensus       544 ---------------------------------------eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~e----  580 (775)
T KOG0319|consen  544 ---------------------------------------EGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE----  580 (775)
T ss_pred             ---------------------------------------cCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh----
Confidence                                                   3678889999999999999999999999999988653    


Q ss_pred             eeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274          347 NFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS  426 (446)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~  426 (446)
                                                               +..+|.+|++.|+.++-+|+..+++||+.|+.|.+|.-.
T Consensus       581 -----------------------------------------C~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~  619 (775)
T KOG0319|consen  581 -----------------------------------------CEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDV  619 (775)
T ss_pred             -----------------------------------------hhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecC
Confidence                                                     235667899999999999999999999999999999543

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.7e-32  Score=262.10  Aligned_cols=264  Identities=20%  Similarity=0.358  Sum_probs=205.3

Q ss_pred             eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (446)
Q Consensus        39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~  118 (446)
                      ..+|...+++++++| ||++||||++||+|+|||...+.++                 .++..|+.+|+.+.|.. .+..
T Consensus       346 QQgH~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~-----------------vTFteHts~Vt~v~f~~-~g~~  406 (893)
T KOG0291|consen  346 QQGHSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGFCF-----------------VTFTEHTSGVTAVQFTA-RGNV  406 (893)
T ss_pred             ccccccceeeEEECC-CCcEEEeccCCCcEEEEeccCceEE-----------------EEeccCCCceEEEEEEe-cCCE
Confidence            458999999999997 6899999999999999999876542                 23468999999988876 7889


Q ss_pred             EEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCC-cEEEEeCCCCceeeeeeCCCCCeEEEE
Q 013274          119 FVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV-QVRLCDIASGAISQTLSGHRDGIMTVE  197 (446)
Q Consensus       119 l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~-~v~vwd~~~~~~~~~l~~h~~~v~sv~  197 (446)
                      ++|+|.||+||.||+.....-++|+.+.++...+++.+ +++.++.+|+.|. .|++|++++|+++..|.||.++|.+++
T Consensus       407 llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD-~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~  485 (893)
T KOG0291|consen  407 LLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVD-PSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLS  485 (893)
T ss_pred             EEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEc-CCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeE
Confidence            99999999999999999999999998887654444433 3456777777664 799999999999999999999999999


Q ss_pred             EecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCcee
Q 013274          198 WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVR  277 (446)
Q Consensus       198 ~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (446)
                      |+|.+. .|+|+|+|.+||+||+-....        +                                           
T Consensus       486 f~~~~~-~LaS~SWDkTVRiW~if~s~~--------~-------------------------------------------  513 (893)
T KOG0291|consen  486 FSPDGS-LLASGSWDKTVRIWDIFSSSG--------T-------------------------------------------  513 (893)
T ss_pred             EccccC-eEEeccccceEEEEEeeccCc--------e-------------------------------------------
Confidence            999998 589999999999999742100        0                                           


Q ss_pred             ecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCC
Q 013274          278 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK  357 (446)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~  357 (446)
                                               .....+...+..++|+|||+.|++++.||.|.+||+..+.+. ..++...     
T Consensus       514 -------------------------vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~-~~Idgrk-----  562 (893)
T KOG0291|consen  514 -------------------------VETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQV-GSIDGRK-----  562 (893)
T ss_pred             -------------------------eeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceee-ccccchh-----
Confidence                                     001123445899999999999999999999999999865321 1111100     


Q ss_pred             CeEEEEcCCCcEEEEeCCCceEEEEeecCc-----eEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCC
Q 013274          358 PIQLATTQDPAVVFVPCMTAVKAFDIWSGK-----TCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI  429 (446)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~  429 (446)
                                              |+..++     ....-....+..+.+++|+||..+++|+..+.|+++++....
T Consensus       563 ------------------------D~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~v  615 (893)
T KOG0291|consen  563 ------------------------DLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGV  615 (893)
T ss_pred             ------------------------hccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhh
Confidence                                    000000     001112334678999999999999999999999999987553

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=8.7e-32  Score=264.96  Aligned_cols=290  Identities=24%  Similarity=0.424  Sum_probs=229.1

Q ss_pred             CCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEE
Q 013274           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV  120 (446)
Q Consensus        41 ~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~  120 (446)
                      .|..+|.++.|++ +|++|++++.|+.|++|+..+...               ...+...+|...|.++.|+| ++.+++
T Consensus       157 ~~~~sv~~~~fs~-~g~~l~~~~~~~~i~~~~~~~~~~---------------~~~~~l~~h~~~v~~~~fs~-d~~~l~  219 (456)
T KOG0266|consen  157 HECPSVTCVDFSP-DGRALAAASSDGLIRIWKLEGIKS---------------NLLRELSGHTRGVSDVAFSP-DGSYLL  219 (456)
T ss_pred             cccCceEEEEEcC-CCCeEEEccCCCcEEEeecccccc---------------hhhccccccccceeeeEECC-CCcEEE
Confidence            3478999999997 678899999999999999854431               00122358999999999998 788999


Q ss_pred             EEeCCCeEEEEEC-CCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEE
Q 013274          121 TGSYDHYVKVWDT-NCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEW  198 (446)
Q Consensus       121 s~s~D~~i~iWd~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~  198 (446)
                      +++.|++|+|||+ ..+..++.+. +...+++++|.+.+   .++++|+.|++|++||++++++...+.+|.+.|++++|
T Consensus       220 s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g---~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f  296 (456)
T KOG0266|consen  220 SGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDG---NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAF  296 (456)
T ss_pred             EecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCC---CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEE
Confidence            9999999999999 4457777775 45567888888864   58999999999999999999999999999999999999


Q ss_pred             ecCCCeEEEEeeCCCcEEEEEccCCc--eeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCce
Q 013274          199 STSSEWILVTGGCDGAIRFWDIRRAG--CFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGV  276 (446)
Q Consensus       199 s~~~~~~l~S~s~Dg~I~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (446)
                      ++++.. |++++.|+.|++||+.++.  |...+..                                             
T Consensus       297 ~~d~~~-l~s~s~d~~i~vwd~~~~~~~~~~~~~~---------------------------------------------  330 (456)
T KOG0266|consen  297 SPDGNL-LVSASYDGTIRVWDLETGSKLCLKLLSG---------------------------------------------  330 (456)
T ss_pred             CCCCCE-EEEcCCCccEEEEECCCCceeeeecccC---------------------------------------------
Confidence            999985 7889999999999998765  2111100                                             


Q ss_pred             eecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecC
Q 013274          277 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTS  356 (446)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~  356 (446)
                                                  ..... +++.+.|+|+|.||++++.|+++++||+..++.... +.......-
T Consensus       331 ----------------------------~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~-~~~~~~~~~  380 (456)
T KOG0266|consen  331 ----------------------------AENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGT-YTGHSNLVR  380 (456)
T ss_pred             ----------------------------CCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceee-ecccCCcce
Confidence                                        00112 589999999999999999999999999998754221 111100000


Q ss_pred             CCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEeccc-ccceEEEEEcCCCCEEEEee--CCCcEEEeCCC
Q 013274          357 KPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGH-YEYVNCCCFSSQDQELYTGG--NDRQILVWCPS  426 (446)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH-~~~v~~~~fSpd~~~lvtgs--~D~~v~vW~~~  426 (446)
                      ........+.+..++++.. ..+.+|++.++..+..+.+| ...+..++++|...++++++  .|+.+++|..+
T Consensus       381 ~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  381 CIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             eEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            1112233556677777654 58999999999999999999 99999999999999999988  79999999764

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=6.3e-32  Score=245.78  Aligned_cols=302  Identities=19%  Similarity=0.297  Sum_probs=223.5

Q ss_pred             CCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEE
Q 013274           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV  120 (446)
Q Consensus        41 ~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~  120 (446)
                      +|...|.+.+|+|....++++|+.|.+.++|++......-......+|. +...  .....-...|+++.|+. +|..||
T Consensus       176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~-~~~~--~~s~~~nkdVT~L~Wn~-~G~~La  251 (524)
T KOG0273|consen  176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHC-IREG--GKSVPSNKDVTSLDWNN-DGTLLA  251 (524)
T ss_pred             cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhh-hhhh--cccCCccCCcceEEecC-CCCeEE
Confidence            4999999999998766689999999999999986411100000001111 0000  00012235799999986 799999


Q ss_pred             EEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEec
Q 013274          121 TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWST  200 (446)
Q Consensus       121 s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~  200 (446)
                      +|+.||.+|+|+.........-.+.+++.++.+...   +.+|++++.|+++.+||..++..-+.+.-|..+-..|.|-.
T Consensus       252 tG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~---G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~  328 (524)
T KOG0273|consen  252 TGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKK---GTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS  328 (524)
T ss_pred             EeecCcEEEEEecCchhhhhhhccCCceEEEEEcCC---CCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec
Confidence            999999999999875443333345678888888764   45899999999999999999998888888988878888876


Q ss_pred             CCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecc
Q 013274          201 SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSS  280 (446)
Q Consensus       201 ~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (446)
                      +.+  |++++.|+.|+++.+......                                                      
T Consensus       329 ~~~--F~ts~td~~i~V~kv~~~~P~------------------------------------------------------  352 (524)
T KOG0273|consen  329 NDE--FATSSTDGCIHVCKVGEDRPV------------------------------------------------------  352 (524)
T ss_pred             Cce--EeecCCCceEEEEEecCCCcc------------------------------------------------------
Confidence            543  799999999999976432110                                                      


Q ss_pred             cceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeE
Q 013274          281 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQ  360 (446)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~  360 (446)
                                            ....+|.++|.+|.|.|.|.+|+|+|.|+++|||........    ..+..+....+.
T Consensus       353 ----------------------~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~----~~l~~Hskei~t  406 (524)
T KOG0273|consen  353 ----------------------KTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV----HDLQAHSKEIYT  406 (524)
T ss_pred             ----------------------eeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcch----hhhhhhccceee
Confidence                                  123579999999999999999999999999999997654321    111111111222


Q ss_pred             EEEcC---------CCcEEEE-eCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCCC
Q 013274          361 LATTQ---------DPAVVFV-PCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS  430 (446)
Q Consensus       361 ~~~~~---------~~~~~~~-~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~~  430 (446)
                      +..+|         ...++++ +..+.+++||+..+.++++|..|..+|.+|+|||||++|+||+.|+.|.+|+....++
T Consensus       407 ~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l  486 (524)
T KOG0273|consen  407 IKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKL  486 (524)
T ss_pred             EeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchhe
Confidence            22222         2233444 4557899999999999999999999999999999999999999999999999887754


Q ss_pred             C
Q 013274          431 D  431 (446)
Q Consensus       431 ~  431 (446)
                      =
T Consensus       487 ~  487 (524)
T KOG0273|consen  487 V  487 (524)
T ss_pred             e
Confidence            3

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=5.4e-33  Score=248.55  Aligned_cols=280  Identities=18%  Similarity=0.310  Sum_probs=216.8

Q ss_pred             cceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEe
Q 013274           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS  123 (446)
Q Consensus        44 ~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s  123 (446)
                      -+|+.|+|.| +|+.|++|+..|...|||...-                 ..+.-.+.|...|.++.|++ ++.+++||+
T Consensus        97 c~V~~v~WtP-eGRRLltgs~SGEFtLWNg~~f-----------------nFEtilQaHDs~Vr~m~ws~-~g~wmiSgD  157 (464)
T KOG0284|consen   97 CPVNVVRWTP-EGRRLLTGSQSGEFTLWNGTSF-----------------NFETILQAHDSPVRTMKWSH-NGTWMISGD  157 (464)
T ss_pred             cceeeEEEcC-CCceeEeecccccEEEecCcee-----------------eHHHHhhhhcccceeEEEcc-CCCEEEEcC
Confidence            4799999986 7899999999999999997421                 01112368999999999987 889999999


Q ss_pred             CCCeEEEEECCCCeeeEEEecC-CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCC
Q 013274          124 YDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSS  202 (446)
Q Consensus       124 ~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~  202 (446)
                      .||.|++|+.+-..+.....+. ..+..++|+|.   ...|+++|.|+.|+|||....+.-..|.||.-.|.++.|.|..
T Consensus       158 ~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpn---DskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~k  234 (464)
T KOG0284|consen  158 KGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPN---DSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTK  234 (464)
T ss_pred             CCceEEecccchhhhHHhhHhhhhhhheeccCCC---CceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCcc
Confidence            9999999998643332222222 45778888873   3478999999999999999988888899999999999999987


Q ss_pred             CeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccc
Q 013274          203 EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVG  282 (446)
Q Consensus       203 ~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (446)
                      . +++|||.|+.|++||.|++.|+.++                                                     
T Consensus       235 g-LiasgskDnlVKlWDprSg~cl~tl-----------------------------------------------------  260 (464)
T KOG0284|consen  235 G-LIASGSKDNLVKLWDPRSGSCLATL-----------------------------------------------------  260 (464)
T ss_pred             c-eeEEccCCceeEeecCCCcchhhhh-----------------------------------------------------
Confidence            6 5799999999999999998764322                                                     


Q ss_pred             eeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEE
Q 013274          283 RIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLA  362 (446)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~  362 (446)
                                             .+|...|.++.|++++.+|+|+|.|..++++|+++-+..+    ..+.+......+.
T Consensus       261 -----------------------h~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~----~~r~Hkkdv~~~~  313 (464)
T KOG0284|consen  261 -----------------------HGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELF----TYRGHKKDVTSLT  313 (464)
T ss_pred             -----------------------hhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHH----Hhhcchhhheeec
Confidence                                   3577789999999999999999999999999998543211    1111122233344


Q ss_pred             EcCC-CcEEEEeCC-CceEEEEeecCceEE-EecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274          363 TTQD-PAVVFVPCM-TAVKAFDIWSGKTCL-TFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS  426 (446)
Q Consensus       363 ~~~~-~~~~~~~~~-~~~~~~d~~~~~~~~-~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~  426 (446)
                      ..|- ..++.+++. ..+..|.+...+.+. .-.+|.+.|++++|+|-|..|+|||.|+++|.|.=.
T Consensus       314 WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  314 WHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             cccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence            4443 334444443 577888876444433 446899999999999999999999999999999554

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=5.8e-31  Score=224.10  Aligned_cols=288  Identities=18%  Similarity=0.279  Sum_probs=210.9

Q ss_pred             EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (446)
Q Consensus        38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~  117 (446)
                      .+.+|++.|+.++|+|--|..|+|+|.|++||+|++..+....         ..-    ....+|+..|.+++|+| .++
T Consensus         9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~---------ck~----vld~~hkrsVRsvAwsp-~g~   74 (312)
T KOG0645|consen    9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWT---------CKT----VLDDGHKRSVRSVAWSP-HGR   74 (312)
T ss_pred             eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEE---------EEE----eccccchheeeeeeecC-CCc
Confidence            4679999999999997437799999999999999987432111         111    11258999999999998 688


Q ss_pred             EEEEEeCCCeEEEEECCCCee--eEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC---ceeeeeeCCCC
Q 013274          118 LFVTGSYDHYVKVWDTNCTRV--VMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG---AISQTLSGHRD  191 (446)
Q Consensus       118 ~l~s~s~D~~i~iWd~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~---~~~~~l~~h~~  191 (446)
                      +||+||.|.++-||.-..+..  +.++.. ...+-++++++.   +.+||+++.|.+|-||.+..+   .++..|.+|..
T Consensus        75 ~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~s---G~~LATCSRDKSVWiWe~deddEfec~aVL~~Htq  151 (312)
T KOG0645|consen   75 YLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSAS---GNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ  151 (312)
T ss_pred             EEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCC---CCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccc
Confidence            999999999999998765543  333332 233677888774   569999999999999999754   46778999999


Q ss_pred             CeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCcccccc
Q 013274          192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSA  271 (446)
Q Consensus       192 ~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (446)
                      .|..|.|+|... +|+|+|-|++||+|+-.....                                              
T Consensus       152 DVK~V~WHPt~d-lL~S~SYDnTIk~~~~~~ddd----------------------------------------------  184 (312)
T KOG0645|consen  152 DVKHVIWHPTED-LLFSCSYDNTIKVYRDEDDDD----------------------------------------------  184 (312)
T ss_pred             cccEEEEcCCcc-eeEEeccCCeEEEEeecCCCC----------------------------------------------
Confidence            999999999765 689999999999997431110                                              


Q ss_pred             CCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEE
Q 013274          272 NGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV  351 (446)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~  351 (446)
                                                 +...+.+.+|.+.|.+++|++.|..|++++.|++++||-..+.-..       
T Consensus       185 ---------------------------W~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~-------  230 (312)
T KOG0645|consen  185 ---------------------------WECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSG-------  230 (312)
T ss_pred             ---------------------------eeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcch-------
Confidence                                       0000113467778999999999999999999999999975432110       


Q ss_pred             EeecCCCeEEEEcCCCcEEEEe-CCCceEEEEeecCc------e-EEEecccccceEEEEEcCC-CCEEEEeeCCCcEEE
Q 013274          352 RLQTSKPIQLATTQDPAVVFVP-CMTAVKAFDIWSGK------T-CLTFRGHYEYVNCCCFSSQ-DQELYTGGNDRQILV  422 (446)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~------~-~~~l~gH~~~v~~~~fSpd-~~~lvtgs~D~~v~v  422 (446)
                       .+....+.++.. ++ .++++ +...++++...+..      + ...-..|...|++++|.|. ..+|+|||.||.|++
T Consensus       231 -~~sr~~Y~v~W~-~~-~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~  307 (312)
T KOG0645|consen  231 -MHSRALYDVPWD-NG-VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNF  307 (312)
T ss_pred             -hcccceEeeeec-cc-ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEE
Confidence             001112223333 33 34444 44677888765431      1 1233579999999999995 788999999999999


Q ss_pred             eCCC
Q 013274          423 WCPS  426 (446)
Q Consensus       423 W~~~  426 (446)
                      |.+.
T Consensus       308 W~l~  311 (312)
T KOG0645|consen  308 WELE  311 (312)
T ss_pred             EEec
Confidence            9764

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=5.1e-33  Score=243.92  Aligned_cols=281  Identities=22%  Similarity=0.361  Sum_probs=208.5

Q ss_pred             CccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEE
Q 013274           42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT  121 (446)
Q Consensus        42 H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s  121 (446)
                      ...+|+|++++  |+ .++||..|.+|+|||.++..+.                 ..+.||++.|.|+.+   +...++|
T Consensus       196 ~skgVYClQYD--D~-kiVSGlrDnTikiWD~n~~~c~-----------------~~L~GHtGSVLCLqy---d~rviis  252 (499)
T KOG0281|consen  196 NSKGVYCLQYD--DE-KIVSGLRDNTIKIWDKNSLECL-----------------KILTGHTGSVLCLQY---DERVIVS  252 (499)
T ss_pred             cCCceEEEEec--ch-hhhcccccCceEEeccccHHHH-----------------HhhhcCCCcEEeeec---cceEEEe
Confidence            45789999994  44 5999999999999998765431                 234699999998776   5669999


Q ss_pred             EeCCCeEEEEECCCCeeeEEEecC-CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc---eeeeeeCCCCCeEEEE
Q 013274          122 GSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA---ISQTLSGHRDGIMTVE  197 (446)
Q Consensus       122 ~s~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~---~~~~l~~h~~~v~sv~  197 (446)
                      ||.|.+|++||+++++++.++-++ ..+..+.|+     ..+++++|.|.++.+||+....   +.+.+.||.+.|..|.
T Consensus       253 GSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~-----ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVd  327 (499)
T KOG0281|consen  253 GSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS-----NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVD  327 (499)
T ss_pred             cCCCceEEEEeccCCchhhHHhhhcceeEEEEEe-----CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeec
Confidence            999999999999999998766432 234444443     2478899999999999998774   3467889999999999


Q ss_pred             EecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCcee
Q 013274          198 WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVR  277 (446)
Q Consensus       198 ~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (446)
                      |+  .++ ++|+|.|.+|++|++.+..+++++.                                               
T Consensus       328 fd--~ky-IVsASgDRTikvW~~st~efvRtl~-----------------------------------------------  357 (499)
T KOG0281|consen  328 FD--DKY-IVSASGDRTIKVWSTSTCEFVRTLN-----------------------------------------------  357 (499)
T ss_pred             cc--cce-EEEecCCceEEEEeccceeeehhhh-----------------------------------------------
Confidence            96  355 7999999999999999887765542                                               


Q ss_pred             ecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCC
Q 013274          278 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK  357 (446)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~  357 (446)
                                                   +|...|.|+-+  .|++++|||.|.+||+||++.|....+ ++   .+..-
T Consensus       358 -----------------------------gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRv-Le---GHEeL  402 (499)
T KOG0281|consen  358 -----------------------------GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRV-LE---GHEEL  402 (499)
T ss_pred             -----------------------------cccccceehhc--cCeEEEecCCCceEEEEeccccHHHHH-Hh---chHHh
Confidence                                         44444665554  478999999999999999998864321 11   11111


Q ss_pred             CeEEEEcCCCcEEEEeCCCceEEEEeecCc---------eEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC
Q 013274          358 PIQLATTQDPAVVFVPCMTAVKAFDIWSGK---------TCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH  428 (446)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---------~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~  428 (446)
                      .-.+.| .+..++..+-++.+++||+.++.         ++.++.-|++.|..+.|  |...+++++.|.+|.||+-...
T Consensus       403 vRciRF-d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~  479 (499)
T KOG0281|consen  403 VRCIRF-DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNG  479 (499)
T ss_pred             hhheee-cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCC
Confidence            111222 23334444456789999987653         24577889999999999  7889999999999999988665


Q ss_pred             CCCCcCCCcc
Q 013274          429 ISDGVDAGPM  438 (446)
Q Consensus       429 ~~~~~~~~~~  438 (446)
                      ....-..++-
T Consensus       480 ~~~~~~~~r~  489 (499)
T KOG0281|consen  480 PPSAAEETRS  489 (499)
T ss_pred             CccccccCCC
Confidence            5554444443

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.8e-30  Score=273.91  Aligned_cols=296  Identities=16%  Similarity=0.277  Sum_probs=219.1

Q ss_pred             CCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEE
Q 013274           40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF  119 (446)
Q Consensus        40 ~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l  119 (446)
                      ..|.+.|.+++|++ ++++||||+.|++|+|||++......   . ..+.++...      .+...|.++.|.+.++.+|
T Consensus       480 ~~~~~~V~~i~fs~-dg~~latgg~D~~I~iwd~~~~~~~~---~-~~~~~~~~~------~~~~~v~~l~~~~~~~~~l  548 (793)
T PLN00181        480 LNSSNLVCAIGFDR-DGEFFATAGVNKKIKIFECESIIKDG---R-DIHYPVVEL------ASRSKLSGICWNSYIKSQV  548 (793)
T ss_pred             cCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEECCcccccc---c-ccccceEEe------cccCceeeEEeccCCCCEE
Confidence            35999999999997 67899999999999999976421100   0 001111111      2345688889988778899


Q ss_pred             EEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEE
Q 013274          120 VTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEW  198 (446)
Q Consensus       120 ~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~  198 (446)
                      ++++.|++|++||+.+++.+..+. +.+.+.++++++.  +..+|++|+.|+.|++||++++..+..+..| ..|.++.|
T Consensus       549 as~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~--~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~  625 (793)
T PLN00181        549 ASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA--DPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQF  625 (793)
T ss_pred             EEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC--CCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEE
Confidence            999999999999999988877765 4456888888863  2358999999999999999999888888755 67999999


Q ss_pred             ecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceee
Q 013274          199 STSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQ  278 (446)
Q Consensus       199 s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (446)
                      +++....|++|+.||.|++||+++....                                                    
T Consensus       626 ~~~~g~~latgs~dg~I~iwD~~~~~~~----------------------------------------------------  653 (793)
T PLN00181        626 PSESGRSLAFGSADHKVYYYDLRNPKLP----------------------------------------------------  653 (793)
T ss_pred             eCCCCCEEEEEeCCCeEEEEECCCCCcc----------------------------------------------------
Confidence            6543346899999999999998753200                                                    


Q ss_pred             cccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCcee--eeeeeEEEeecC
Q 013274          279 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNT--LVNFETVRLQTS  356 (446)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~--~~~~~~~~~~~~  356 (446)
                                             .....+|...|.++.|. ++.+|+|++.|++|++||+..+...  ...+..+..+..
T Consensus       654 -----------------------~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~  709 (793)
T PLN00181        654 -----------------------LCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTN  709 (793)
T ss_pred             -----------------------ceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCC
Confidence                                   00113577889999997 7889999999999999999753210  001112222233


Q ss_pred             CCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEE-------------EecccccceEEEEEcCCCCEEEEeeCCCcEEE
Q 013274          357 KPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCL-------------TFRGHYEYVNCCCFSSQDQELYTGGNDRQILV  422 (446)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~-------------~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~v  422 (446)
                      ....+.+++++.++++++. ..+.+|+........             .+..|...|.+++|+|++..|++|+.||+|+|
T Consensus       710 ~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i  789 (793)
T PLN00181        710 VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKI  789 (793)
T ss_pred             CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEE
Confidence            4456778888888877754 688999975443221             12346678999999999999999999999999


Q ss_pred             eCC
Q 013274          423 WCP  425 (446)
Q Consensus       423 W~~  425 (446)
                      |++
T Consensus       790 ~~~  792 (793)
T PLN00181        790 LEM  792 (793)
T ss_pred             Eec
Confidence            975

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-31  Score=227.68  Aligned_cols=286  Identities=21%  Similarity=0.278  Sum_probs=219.1

Q ss_pred             EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (446)
Q Consensus        38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~  117 (446)
                      .++||..+++.|.++ .+|++|.|++.|.++.||-.-+++..                 .+..||+++|+|+...- +.+
T Consensus         5 ~l~GHERplTqiKyN-~eGDLlFscaKD~~~~vw~s~nGerl-----------------Gty~GHtGavW~~Did~-~s~   65 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYN-REGDLLFSCAKDSTPTVWYSLNGERL-----------------GTYDGHTGAVWCCDIDW-DSK   65 (327)
T ss_pred             ccccCccccceEEec-CCCcEEEEecCCCCceEEEecCCcee-----------------eeecCCCceEEEEEecC-Ccc
Confidence            367999999999998 47899999999999999975444321                 23469999999988765 678


Q ss_pred             EEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEee-----CCCcEEEEeCC-------CCceeee
Q 013274          118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGT-----EDVQVRLCDIA-------SGAISQT  185 (446)
Q Consensus       118 ~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs-----~d~~v~vwd~~-------~~~~~~~  185 (446)
                      .++|||.|.++++||+++|+++.++..+..+..+.|++.+   .+++...     ..+.|.++|++       ...+...
T Consensus        66 ~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~g---n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~k  142 (327)
T KOG0643|consen   66 HLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGG---NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLK  142 (327)
T ss_pred             eeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCC---cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEE
Confidence            9999999999999999999999999988888888888753   3444433     34579999997       3456778


Q ss_pred             eeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCC
Q 013274          186 LSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRA  265 (446)
Q Consensus       186 l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (446)
                      +..+...++.+-|.|-++. |++|..||.|.+||++++..+--                                     
T Consensus       143 I~t~~skit~a~Wg~l~~~-ii~Ghe~G~is~~da~~g~~~v~-------------------------------------  184 (327)
T KOG0643|consen  143 IPTPDSKITSALWGPLGET-IIAGHEDGSISIYDARTGKELVD-------------------------------------  184 (327)
T ss_pred             ecCCccceeeeeecccCCE-EEEecCCCcEEEEEcccCceeee-------------------------------------
Confidence            8888899999999999985 78999999999999998642100                                     


Q ss_pred             ccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceee
Q 013274          266 PQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTL  345 (446)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~  345 (446)
                                                            ....|...|+.|.|++|..+++|++.|.+.++||+.+-.. +
T Consensus       185 --------------------------------------s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v-~  225 (327)
T KOG0643|consen  185 --------------------------------------SDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEV-L  225 (327)
T ss_pred             --------------------------------------chhhhccccccccccCCcceEEecccCccceeeeccceee-E
Confidence                                                  0124666799999999999999999999999999987432 1


Q ss_pred             eeeeEEEeecCCCeEEEEcCCCcEEEEeCCCc---------------eEEEEeecCceEEEecccccceEEEEEcCCCCE
Q 013274          346 VNFETVRLQTSKPIQLATTQDPAVVFVPCMTA---------------VKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQE  410 (446)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~  410 (446)
                      ..+.+    ..+...++.+|-...+.++++..               .+.+++--.+....+.||-++|++|+|+|||+.
T Consensus       226 Kty~t----e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGks  301 (327)
T KOG0643|consen  226 KTYTT----ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKS  301 (327)
T ss_pred             EEeee----cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcc
Confidence            11211    12334466677655555544321               112222223345677899999999999999999


Q ss_pred             EEEeeCCCcEEEeCCC
Q 013274          411 LYTGGNDRQILVWCPS  426 (446)
Q Consensus       411 lvtgs~D~~v~vW~~~  426 (446)
                      .+||++||.|||..-+
T Consensus       302 YsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  302 YSSGGEDGYVRLHHFD  317 (327)
T ss_pred             cccCCCCceEEEEEec
Confidence            9999999999997443

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=6.7e-31  Score=239.11  Aligned_cols=277  Identities=19%  Similarity=0.347  Sum_probs=228.4

Q ss_pred             ccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEE
Q 013274           43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG  122 (446)
Q Consensus        43 ~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~  122 (446)
                      +..|++|+|+ .+|.+||+|+.||.+++||......                  .++.-|+++|.++.|.- .+.+++++
T Consensus       235 nkdVT~L~Wn-~~G~~LatG~~~G~~riw~~~G~l~------------------~tl~~HkgPI~slKWnk-~G~yilS~  294 (524)
T KOG0273|consen  235 NKDVTSLDWN-NDGTLLATGSEDGEARIWNKDGNLI------------------STLGQHKGPIFSLKWNK-KGTYILSG  294 (524)
T ss_pred             cCCcceEEec-CCCCeEEEeecCcEEEEEecCchhh------------------hhhhccCCceEEEEEcC-CCCEEEec
Confidence            3679999998 5789999999999999999753211                  23357999999999986 78899999


Q ss_pred             eCCCeEEEEECCCCeeeEEEecCCce-EEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecC
Q 013274          123 SYDHYVKVWDTNCTRVVMNFKMPGKV-YRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTS  201 (446)
Q Consensus       123 s~D~~i~iWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~  201 (446)
                      +-|+++.+||..++++...+.+.... ..+.+..    ..-|++++.|+.|+|+-+....++.++.||.++|.++.|+|.
T Consensus       295 ~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~----~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~t  370 (524)
T KOG0273|consen  295 GVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS----NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPT  370 (524)
T ss_pred             cCCccEEEEeccCceEEEeeeeccCCccceEEec----CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCC
Confidence            99999999999999988888765433 3344433    345899999999999999999999999999999999999999


Q ss_pred             CCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeeccc
Q 013274          202 SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV  281 (446)
Q Consensus       202 ~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (446)
                      +. +|+|+|.|++++||.+....++..+                                                    
T Consensus       371 g~-LLaS~SdD~TlkiWs~~~~~~~~~l----------------------------------------------------  397 (524)
T KOG0273|consen  371 GS-LLASCSDDGTLKIWSMGQSNSVHDL----------------------------------------------------  397 (524)
T ss_pred             Cc-eEEEecCCCeeEeeecCCCcchhhh----------------------------------------------------
Confidence            87 6899999999999997655433222                                                    


Q ss_pred             ceeecCCccccccCCCcccccccccccccCeEEEEEccCC---------CEEEEeecCCcEEEEecCcCceeeeeeeEEE
Q 013274          282 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG---------MYLLSAGSDSRIRLWDVESGRNTLVNFETVR  352 (446)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg---------~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~  352 (446)
                                              .+|...|..+.|+|+|         ..|++++.|++|++||+..+.+..    .+.
T Consensus       398 ------------------------~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~----~f~  449 (524)
T KOG0273|consen  398 ------------------------QAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIH----TLM  449 (524)
T ss_pred             ------------------------hhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeE----eec
Confidence                                    3455556666666654         579999999999999999886533    344


Q ss_pred             eecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCC
Q 013274          353 LQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP  425 (446)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~  425 (446)
                      .+..+++.++++|++.+++++.. ..+.+|+..++++++.+.+-.+ |..|+|+.+|.+|..+-.|+.++|-++
T Consensus       450 kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~-Ifel~Wn~~G~kl~~~~sd~~vcvldl  522 (524)
T KOG0273|consen  450 KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGG-IFELCWNAAGDKLGACASDGSVCVLDL  522 (524)
T ss_pred             cCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCe-EEEEEEcCCCCEEEEEecCCCceEEEe
Confidence            45778899999999999999865 5789999999999999987654 999999999999999999999998765

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.3e-32  Score=243.74  Aligned_cols=292  Identities=20%  Similarity=0.339  Sum_probs=220.8

Q ss_pred             eEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC
Q 013274           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (446)
Q Consensus        37 ~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~  116 (446)
                      .++..|+..|+=++||+ +|++|||||.|.+..+|++-....++              -..+..||..+|..+.|+| |.
T Consensus       218 qil~~htdEVWfl~FS~-nGkyLAsaSkD~Taiiw~v~~d~~~k--------------l~~tlvgh~~~V~yi~wSP-Dd  281 (519)
T KOG0293|consen  218 QILQDHTDEVWFLQFSH-NGKYLASASKDSTAIIWIVVYDVHFK--------------LKKTLVGHSQPVSYIMWSP-DD  281 (519)
T ss_pred             hhHhhCCCcEEEEEEcC-CCeeEeeccCCceEEEEEEecCccee--------------eeeeeecccCceEEEEECC-CC
Confidence            35678999999999985 79999999999999999975433211              1235579999999999998 66


Q ss_pred             cEEEEEeCCCeEEEEECCCCeeeEEEecC--CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCC-CCe
Q 013274          117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMP--GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHR-DGI  193 (446)
Q Consensus       117 ~~l~s~s~D~~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~-~~v  193 (446)
                      .+|++|+-|..+++||+.++.....++..  ..+.+.++.|++   ..+++|+.|+.+..||++... ....++-. ..|
T Consensus       282 ryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg---~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v  357 (519)
T KOG0293|consen  282 RYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDG---FRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKV  357 (519)
T ss_pred             CeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCC---ceeEecCCCCcEEEecCCcch-hhccccccccee
Confidence            79999999999999999999988877654  335566777754   469999999999999997543 33333332 458


Q ss_pred             EEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCC
Q 013274          194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANG  273 (446)
Q Consensus       194 ~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (446)
                      ..++..+||+++ ++...|..|++++..+..+...                                             
T Consensus       358 ~dlait~Dgk~v-l~v~~d~~i~l~~~e~~~dr~l---------------------------------------------  391 (519)
T KOG0293|consen  358 HDLAITYDGKYV-LLVTVDKKIRLYNREARVDRGL---------------------------------------------  391 (519)
T ss_pred             EEEEEcCCCcEE-EEEecccceeeechhhhhhhcc---------------------------------------------
Confidence            999999999985 5666899999998654221100                                             


Q ss_pred             CceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEe
Q 013274          274 NGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRL  353 (446)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~  353 (446)
                                                      ..-..+|++...|.||+++++.=.+..+++||++..+. ...+...+ 
T Consensus       392 --------------------------------ise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~l-v~kY~Ghk-  437 (519)
T KOG0293|consen  392 --------------------------------ISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKL-VRKYFGHK-  437 (519)
T ss_pred             --------------------------------ccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhH-HHHhhccc-
Confidence                                            01134699999999999999999999999999985321 11111111 


Q ss_pred             ecCCCeEEEEcC-CCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCC-CEEEEeeCCCcEEEeCCCCC
Q 013274          354 QTSKPIQLATTQ-DPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQD-QELYTGGNDRQILVWCPSRH  428 (446)
Q Consensus       354 ~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~-~~lvtgs~D~~v~vW~~~~~  428 (446)
                      +....+..+|.- +...+++++. +.+.+|+..+++++.+|.||...|+||+|+|.. .++||+|.||+||||.+...
T Consensus       438 q~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  438 QGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             ccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence            111233334432 3356666654 579999999999999999999999999999964 77999999999999988643

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.1e-31  Score=234.72  Aligned_cols=244  Identities=23%  Similarity=0.402  Sum_probs=206.1

Q ss_pred             ccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeC
Q 013274           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI  177 (446)
Q Consensus        99 ~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~  177 (446)
                      ..||.+-|.|+.+-|. ++.|+|||.|++|+|||++++++..+++ +-..+..++++..   +.++.+++.|+.|+-||+
T Consensus       147 i~gHlgWVr~vavdP~-n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~r---HpYlFs~gedk~VKCwDL  222 (460)
T KOG0285|consen  147 ISGHLGWVRSVAVDPG-NEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKR---HPYLFSAGEDKQVKCWDL  222 (460)
T ss_pred             hhhccceEEEEeeCCC-ceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeeccc---CceEEEecCCCeeEEEec
Confidence            3699999999999884 6799999999999999999999887766 3344566677764   568999999999999999


Q ss_pred             CCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCC
Q 013274          178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQ  257 (446)
Q Consensus       178 ~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (446)
                      +.++.++.+.||-..|.+++..|.-. +|+||+.|.++|+||+|+.-.+.                              
T Consensus       223 e~nkvIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~V~------------------------------  271 (460)
T KOG0285|consen  223 EYNKVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRASVH------------------------------  271 (460)
T ss_pred             hhhhhHHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccceEE------------------------------
Confidence            99999999999999999999999876 58999999999999999742111                              


Q ss_pred             CCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEe
Q 013274          258 NSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWD  337 (446)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd  337 (446)
                                                                    ...||..+|..|.+.|-...++|||.|++|++||
T Consensus       272 ----------------------------------------------~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWD  305 (460)
T KOG0285|consen  272 ----------------------------------------------VLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWD  305 (460)
T ss_pred             ----------------------------------------------EecCCCCcceeEEeecCCCceEEecCCceEEEee
Confidence                                                          1257999999999999888899999999999999


Q ss_pred             cCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCC
Q 013274          338 VESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND  417 (446)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D  417 (446)
                      +..++....    +..+......++..|....+++++.+.++.|++-.|..+..+.+|+..|++++...|+ ++++|++.
T Consensus       306 l~agkt~~t----lt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dn  380 (460)
T KOG0285|consen  306 LRAGKTMIT----LTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDN  380 (460)
T ss_pred             eccCceeEe----eecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCc
Confidence            998874322    2222234455677788788888888999999999999999999999999999998886 78899999


Q ss_pred             CcEEEeCCCCC
Q 013274          418 RQILVWCPSRH  428 (446)
Q Consensus       418 ~~v~vW~~~~~  428 (446)
                      |.+..|+...+
T Consensus       381 g~~~fwdwksg  391 (460)
T KOG0285|consen  381 GSIMFWDWKSG  391 (460)
T ss_pred             eEEEEEecCcC
Confidence            99999999754

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=8.9e-31  Score=250.31  Aligned_cols=292  Identities=18%  Similarity=0.298  Sum_probs=215.4

Q ss_pred             cCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCC
Q 013274          100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS  179 (446)
Q Consensus       100 ~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~  179 (446)
                      .||...|.++.++. +...++||+. +++++|+..+.++++++++. -+.+..|.|   +..+++.|...|.+.+||+.+
T Consensus       370 ~GHR~dVRsl~vS~-d~~~~~Sga~-~SikiWn~~t~kciRTi~~~-y~l~~~Fvp---gd~~Iv~G~k~Gel~vfdlaS  443 (888)
T KOG0306|consen  370 GGHRSDVRSLCVSS-DSILLASGAG-ESIKIWNRDTLKCIRTITCG-YILASKFVP---GDRYIVLGTKNGELQVFDLAS  443 (888)
T ss_pred             ccchhheeEEEeec-CceeeeecCC-CcEEEEEccCcceeEEeccc-cEEEEEecC---CCceEEEeccCCceEEEEeeh
Confidence            58999999998876 5656676654 68999999999999999865 444555555   456899999999999999999


Q ss_pred             CceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCC
Q 013274          180 GAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNS  259 (446)
Q Consensus       180 ~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (446)
                      ...+.+++.|.+.+++++.+|+++. ++|||.|.+|++||..--      ..   ..|.....                .
T Consensus       444 ~~l~Eti~AHdgaIWsi~~~pD~~g-~vT~saDktVkfWdf~l~------~~---~~gt~~k~----------------l  497 (888)
T KOG0306|consen  444 ASLVETIRAHDGAIWSISLSPDNKG-FVTGSADKTVKFWDFKLV------VS---VPGTQKKV----------------L  497 (888)
T ss_pred             hhhhhhhhccccceeeeeecCCCCc-eEEecCCcEEEEEeEEEE------ec---cCccccee----------------e
Confidence            9999999999999999999999997 689999999999997421      00   00000000                0


Q ss_pred             CcCCCCccccccCCCceeecccceeecCCccccccCCC---cccccccccccccCeEEEEEccCCCEEEEeecCCcEEEE
Q 013274          260 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPG---MLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW  336 (446)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lW  336 (446)
                      ............+..++..+|.+++.+.+..+..+...   .+...-.+-||.-||.||..|||++.++|||.|++|++|
T Consensus       498 sl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiW  577 (888)
T KOG0306|consen  498 SLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIW  577 (888)
T ss_pred             eeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEe
Confidence            00000111111223345666666666555444333211   111122356999999999999999999999999999999


Q ss_pred             ecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEee
Q 013274          337 DVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGG  415 (446)
Q Consensus       337 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs  415 (446)
                      -+.-|.+..-    +..+....+.+.|-|.....|.++- ..++.||-.+.+...+|.||...|+|++.+|+|++++|+|
T Consensus       578 GLdFGDCHKS----~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~s  653 (888)
T KOG0306|consen  578 GLDFGDCHKS----FFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSS  653 (888)
T ss_pred             ccccchhhhh----hhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEecc
Confidence            8877665321    1123345677888886666555544 4789999999999999999999999999999999999999


Q ss_pred             CCCcEEEeCCCC
Q 013274          416 NDRQILVWCPSR  427 (446)
Q Consensus       416 ~D~~v~vW~~~~  427 (446)
                      .|.+||+|.-..
T Consensus       654 hD~sIRlwE~td  665 (888)
T KOG0306|consen  654 HDKSIRLWERTD  665 (888)
T ss_pred             CCceeEeeeccC
Confidence            999999997653

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-31  Score=226.32  Aligned_cols=246  Identities=27%  Similarity=0.440  Sum_probs=202.6

Q ss_pred             ccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEE
Q 013274           43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG  122 (446)
Q Consensus        43 ~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~  122 (446)
                      +..++.++|++..++.+++++.||+++|||+.....           ++     +..+.|+.+|.++.+.+.++..++++
T Consensus        60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~-----------Pi-----~~~kEH~~EV~Svdwn~~~r~~~lts  123 (311)
T KOG0277|consen   60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK-----------PI-----HKFKEHKREVYSVDWNTVRRRIFLTS  123 (311)
T ss_pred             ccceeEeeecCCCcceEEEEecCceEEEeccCCCCc-----------ch-----hHHHhhhhheEEeccccccceeEEee
Confidence            478999999998889999999999999999653321           11     22357999999999999999999999


Q ss_pred             eCCCeEEEEECCCCeeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecC
Q 013274          123 SYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTS  201 (446)
Q Consensus       123 s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~  201 (446)
                      |+|++||+|+...+.-++++.. ...++...++|..+  .+++++|.|+.+++||++.......++.|..++.+..|+.-
T Consensus       124 SWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~--nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky  201 (311)
T KOG0277|consen  124 SWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIP--NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKY  201 (311)
T ss_pred             ccCCceEeecCCCCcceEeecCCccEEEEEecCCCCC--CeEEEccCCceEEEEEecCCCceeEEEeccceeEeeccccc
Confidence            9999999999998888888764 34588899999765  58999999999999999876555669999999999999999


Q ss_pred             CCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeeccc
Q 013274          202 SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV  281 (446)
Q Consensus       202 ~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (446)
                      +.++++||+.|+.||.||+|+.+.                                                        
T Consensus       202 ~~~vl~Tg~vd~~vr~wDir~~r~--------------------------------------------------------  225 (311)
T KOG0277|consen  202 NHNVLATGGVDNLVRGWDIRNLRT--------------------------------------------------------  225 (311)
T ss_pred             CCcEEEecCCCceEEEEehhhccc--------------------------------------------------------
Confidence            899999999999999999986320                                                        


Q ss_pred             ceeecCCccccccCCCcccccccccccccCeEEEEEccCC-CEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeE
Q 013274          282 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQ  360 (446)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~  360 (446)
                                         +...+.+|.-+|+.|+|||.. ..|+|++-|-++||||...+...                
T Consensus       226 -------------------pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~----------------  270 (311)
T KOG0277|consen  226 -------------------PLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSA----------------  270 (311)
T ss_pred             -------------------cceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhh----------------
Confidence                               000124788889999999975 57899999999999998754210                


Q ss_pred             EEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcC-CCCEEEEeeCCCcEEEeCC
Q 013274          361 LATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS-QDQELYTGGNDRQILVWCP  425 (446)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSp-d~~~lvtgs~D~~v~vW~~  425 (446)
                                                  +.+..-|+.-|-.+.||+ +..++|+++.|..+.||+|
T Consensus       271 ----------------------------~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  271 ----------------------------IETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             ----------------------------hhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence                                        112234777788888886 5789999999999999997

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=1.2e-31  Score=232.09  Aligned_cols=299  Identities=23%  Similarity=0.389  Sum_probs=225.9

Q ss_pred             eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCc------CCCCCCccccccceEEeccccccCccccEeEEEEe
Q 013274           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRAT------DYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWY  112 (446)
Q Consensus        39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~  112 (446)
                      ++.|++++.+.+|++ ||.+++|||.|-+|+|.|++..-      ....+. .....++    ..++..|..+|+++.|+
T Consensus       108 lt~HK~~cR~aafs~-DG~lvATGsaD~SIKildvermlaks~~~em~~~~-~qa~hPv----IRTlYDH~devn~l~FH  181 (430)
T KOG0640|consen  108 LTSHKSPCRAAAFSP-DGSLVATGSADASIKILDVERMLAKSKPKEMISGD-TQARHPV----IRTLYDHVDEVNDLDFH  181 (430)
T ss_pred             EeecccceeeeeeCC-CCcEEEccCCcceEEEeehhhhhhhcchhhhccCC-cccCCce----EeehhhccCcccceeec
Confidence            578999999999996 78999999999999999987321      111100 0111122    23567899999999999


Q ss_pred             ecCCcEEEEEeCCCeEEEEECCCCeeeE---EEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeee---
Q 013274          113 PVDTGLFVTGSYDHYVKVWDTNCTRVVM---NFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL---  186 (446)
Q Consensus       113 ~~~~~~l~s~s~D~~i~iWd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l---  186 (446)
                      | ...+|+||+.|++|+++|.......+   .++-...+.+++|+|.   +.+|+.|.....+++||+++-.+...-   
T Consensus       182 P-re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPs---GefllvgTdHp~~rlYdv~T~QcfvsanPd  257 (430)
T KOG0640|consen  182 P-RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPS---GEFLLVGTDHPTLRLYDVNTYQCFVSANPD  257 (430)
T ss_pred             c-hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCC---CceEEEecCCCceeEEeccceeEeeecCcc
Confidence            8 56799999999999999987554332   2333456778888874   468899999999999999987654332   


Q ss_pred             eCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCc
Q 013274          187 SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAP  266 (446)
Q Consensus       187 ~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (446)
                      .+|.+.|++|.+++.++ +.+|+|.||.|+|||--.+.|++.|.                                    
T Consensus       258 ~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~rCv~t~~------------------------------------  300 (430)
T KOG0640|consen  258 DQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNRCVRTIG------------------------------------  300 (430)
T ss_pred             cccccceeEEEecCCcc-EEEEeccCCcEEeeccccHHHHHHHH------------------------------------
Confidence            46999999999999987 56899999999999977666654431                                    


Q ss_pred             cccccCCCceeecccceeecCCccccccCCCccccccccccccc-CeEEEEEccCCCEEEEeecCCcEEEEecCcCceee
Q 013274          267 QKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYG-AVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTL  345 (446)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~  345 (446)
                                                             .+|.+ .|.+..|..+|+|++|.|.|..+++|.+.+++...
T Consensus       301 ---------------------------------------~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~  341 (430)
T KOG0640|consen  301 ---------------------------------------NAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLK  341 (430)
T ss_pred             ---------------------------------------hhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEE
Confidence                                                   23433 58899999999999999999999999999987532


Q ss_pred             eeeeEE--EeecCCCeEEEEcCCCcEEEEeC--CCceEEEEeecCceEEEe-cccccceEEEEEcCCCCEEEEeeCCCcE
Q 013274          346 VNFETV--RLQTSKPIQLATTQDPAVVFVPC--MTAVKAFDIWSGKTCLTF-RGHYEYVNCCCFSSQDQELYTGGNDRQI  420 (446)
Q Consensus       346 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~l-~gH~~~v~~~~fSpd~~~lvtgs~D~~v  420 (446)
                       .+..-  ...+....++.|.....++..+.  ...+-.||..+...+..+ .||++.+.++.-||.+..+.|||.|..+
T Consensus       342 -~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~ra  420 (430)
T KOG0640|consen  342 -EYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRA  420 (430)
T ss_pred             -EEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeeccccee
Confidence             22111  01112233455666666666653  357788998887665544 6999999999999999999999999999


Q ss_pred             EEeC
Q 013274          421 LVWC  424 (446)
Q Consensus       421 ~vW~  424 (446)
                      |.|-
T Consensus       421 RFWy  424 (430)
T KOG0640|consen  421 RFWY  424 (430)
T ss_pred             eeee
Confidence            9994

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.98  E-value=4.4e-32  Score=239.41  Aligned_cols=324  Identities=16%  Similarity=0.221  Sum_probs=233.8

Q ss_pred             CCchhhhhhhhcccceeccccceeEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEE
Q 013274           14 RPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFV   93 (446)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~   93 (446)
                      |+.+|..++...+|+.+..+.|-.-+.+|...|++|+-+|..-..++|||.||.|+|||+....+.              
T Consensus        37 ~~rEy~RALNAtKleR~fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~--------------  102 (433)
T KOG0268|consen   37 RAREYTRALNATKLERVFAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECI--------------  102 (433)
T ss_pred             hHHHHHHHhhhHHHHHHhhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhh--------------
Confidence            566777777777887776655555568999999999998754467999999999999999765431              


Q ss_pred             eccccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEE
Q 013274           94 VDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVR  173 (446)
Q Consensus        94 ~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~  173 (446)
                         ..+..|.+-|..+.+..   ..++|+|+|++|+.|.++. .++.++-+.+.+..+....   ....+|+++.  .|.
T Consensus       103 ---~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~~~-~p~~tilg~s~~~gIdh~~---~~~~FaTcGe--~i~  170 (433)
T KOG0268|consen  103 ---RTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWKIDG-PPLHTILGKSVYLGIDHHR---KNSVFATCGE--QID  170 (433)
T ss_pred             ---heeecccCceeeEEecc---cceEEecCCcceeeeeccC-Ccceeeecccccccccccc---ccccccccCc--eee
Confidence               23468888898887743   5789999999999999875 3566665544443333322   2235777754  699


Q ss_pred             EEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeecccc
Q 013274          174 LCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSL  253 (446)
Q Consensus       174 vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (446)
                      |||.+-..++..+.--.+.|.++.|+|-...+|++|+.|+.|.|||+|++..++..-..-                    
T Consensus       171 IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~m--------------------  230 (433)
T KOG0268|consen  171 IWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTM--------------------  230 (433)
T ss_pred             ecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeec--------------------
Confidence            999998888999988889999999999988899999999999999999876544321000                    


Q ss_pred             ccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCc----ccccccccccccCeEEEEEccCCCEEEEeec
Q 013274          254 SAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGM----LSSQDRATAHYGAVTGLKVTEDGMYLLSAGS  329 (446)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~  329 (446)
                                        ..+.+++.|.+.....+..+..+....    -.+.....+|.++|..|+|||-|+-++|||-
T Consensus       231 ------------------RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgsy  292 (433)
T KOG0268|consen  231 ------------------RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSY  292 (433)
T ss_pred             ------------------cccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccc
Confidence                              001112222111111111111111110    0111234678899999999999999999999


Q ss_pred             CCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCC
Q 013274          330 DSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQ  409 (446)
Q Consensus       330 D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~  409 (446)
                      |.+||||.+..++..-+ +.+.                                           --..|.||.||.|.+
T Consensus       293 DksIRIf~~~~~~SRdi-Yhtk-------------------------------------------RMq~V~~Vk~S~Dsk  328 (433)
T KOG0268|consen  293 DKSIRIFPVNHGHSRDI-YHTK-------------------------------------------RMQHVFCVKYSMDSK  328 (433)
T ss_pred             cceEEEeecCCCcchhh-hhHh-------------------------------------------hhheeeEEEEecccc
Confidence            99999998876542110 1000                                           013589999999999


Q ss_pred             EEEEeeCCCcEEEeCCCCCCCCCcCCCccCccCCCC
Q 013274          410 ELYTGGNDRQILVWCPSRHISDGVDAGPMQDQDNWS  445 (446)
Q Consensus       410 ~lvtgs~D~~v~vW~~~~~~~~~~~~~~~~~~~~~~  445 (446)
                      +++|||.|+.||+|....+...|++.-+++...+|+
T Consensus       329 yi~SGSdd~nvRlWka~Aseklgv~t~rEk~~~~Y~  364 (433)
T KOG0268|consen  329 YIISGSDDGNVRLWKAKASEKLGVITPREKNKLEYN  364 (433)
T ss_pred             EEEecCCCcceeeeecchhhhcCCCChhHHHHHHHH
Confidence            999999999999999999999999999999988885

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=3.9e-30  Score=245.73  Aligned_cols=306  Identities=20%  Similarity=0.279  Sum_probs=227.8

Q ss_pred             eeEeCCCccceeEEEeecCCC-CEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeec
Q 013274           36 KEIVSPHKGSINSLQVDLTEE-RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV  114 (446)
Q Consensus        36 ~~~~~~H~~~v~~l~~s~~~~-~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~  114 (446)
                      .-.++||-|.|.++.|.|.-. ..|++|+.|++|++||+++...           .+     .....|...|+++.+.+ 
T Consensus       140 th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t-----------cl-----~~~~~H~S~vtsL~~~~-  202 (775)
T KOG0319|consen  140 THSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT-----------CL-----HTMILHKSAVTSLAFSE-  202 (775)
T ss_pred             EEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch-----------HH-----HHHHhhhhheeeeeecc-
Confidence            334789999999999987533 3689999999999999986432           00     12247999999999987 


Q ss_pred             CCcEEEEEeCCCeEEEEECCCCeeeEEEec----------------------------------------------C---
Q 013274          115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKM----------------------------------------------P---  145 (446)
Q Consensus       115 ~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~----------------------------------------------~---  145 (446)
                      |+..++++|.|+.+.+||+.+.+..+..+.                                              +   
T Consensus       203 d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~  282 (775)
T KOG0319|consen  203 DSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSE  282 (775)
T ss_pred             CCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCch
Confidence            688999999999999999743221111100                                              0   


Q ss_pred             -----------------------------------------CceEEeeecc-----------------------------
Q 013274          146 -----------------------------------------GKVYRTAMSP-----------------------------  155 (446)
Q Consensus       146 -----------------------------------------~~~~~~~~~~-----------------------------  155 (446)
                                                               +.+..+.+-.                             
T Consensus       283 e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~  362 (775)
T KOG0319|consen  283 EIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIP  362 (775)
T ss_pred             hhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEe
Confidence                                                     0000000000                             


Q ss_pred             ---------C-CCCceEEEEeeCCCcEEEEeCCCC----ceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEcc
Q 013274          156 ---------L-AASHMLIAAGTEDVQVRLCDIASG----AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR  221 (446)
Q Consensus       156 ---------~-~~~~~~lasgs~d~~v~vwd~~~~----~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~  221 (446)
                               + ..++.+|++|+.|.++++|-++.+    .++....+|.+.|.+|+++..+..+|+|+|.|++|++|+++
T Consensus       363 GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~  442 (775)
T KOG0319|consen  363 GHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLP  442 (775)
T ss_pred             CchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCC
Confidence                     0 011247899999999999988544    34567789999999999988887889999999999999987


Q ss_pred             CCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccc
Q 013274          222 RAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSS  301 (446)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (446)
                      ..+.-..           +                                                        ..+..
T Consensus       443 ~s~~~~~-----------~--------------------------------------------------------~~~~~  455 (775)
T KOG0319|consen  443 KSKETAF-----------P--------------------------------------------------------IVLTC  455 (775)
T ss_pred             Ccccccc-----------c--------------------------------------------------------ceehh
Confidence            5211000           0                                                        00000


Q ss_pred             cccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEE
Q 013274          302 QDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKA  380 (446)
Q Consensus       302 ~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  380 (446)
                      .....+|.-.|++|+++|+.++++|||.|++.+||+++..+  +  ...+..+.-..-.+.|++....++.+++ .++++
T Consensus       456 ~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~--l--~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKI  531 (775)
T KOG0319|consen  456 RYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR--L--LGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKI  531 (775)
T ss_pred             hHHHHhhcccccceEecCCCceEEecccccceeeecccCce--E--EEEeeCCccceEEEEeccccceeEeccCCceEEE
Confidence            01124788889999999999999999999999999998432  1  2334444556677889888878777655 58999


Q ss_pred             EEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCC
Q 013274          381 FDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI  429 (446)
Q Consensus       381 ~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~  429 (446)
                      |.+.++.++++|.||+..|.-+.|-.+++.|+||++||.||||+..+..
T Consensus       532 W~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~e  580 (775)
T KOG0319|consen  532 WSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE  580 (775)
T ss_pred             EEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh
Confidence            9999999999999999999999999999999999999999999987553

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=9.4e-30  Score=212.54  Aligned_cols=283  Identities=22%  Similarity=0.325  Sum_probs=221.2

Q ss_pred             EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (446)
Q Consensus        38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~  117 (446)
                      ++..|+++|++++|+- +|+|.+|+++|++|++||...+..+                 ++..||..+|..+.... |+.
T Consensus        12 ~l~~~qgaV~avryN~-dGnY~ltcGsdrtvrLWNp~rg~li-----------------ktYsghG~EVlD~~~s~-Dns   72 (307)
T KOG0316|consen   12 ILDCAQGAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRGALI-----------------KTYSGHGHEVLDAALSS-DNS   72 (307)
T ss_pred             eecccccceEEEEEcc-CCCEEEEcCCCceEEeeccccccee-----------------eeecCCCceeeeccccc-ccc
Confidence            4678999999999985 7899999999999999998766532                 23357888898887765 677


Q ss_pred             EEEEEeCCCeEEEEECCCCeeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC--ceeeeeeCCCCCeE
Q 013274          118 LFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG--AISQTLSGHRDGIM  194 (446)
Q Consensus       118 ~l~s~s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~--~~~~~l~~h~~~v~  194 (446)
                      .|++|+.|+.+.+||+++|++++.+.. .+.++.+.|..   ...++++|+-|.++++||.++.  ++++.|..-.+.|.
T Consensus        73 kf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNe---esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~  149 (307)
T KOG0316|consen   73 KFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNE---ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVS  149 (307)
T ss_pred             ccccCCCCceEEEEEcccCeeeeecccccceeeEEEecC---cceEEEeccccceeEEEEcccCCCCccchhhhhcCcee
Confidence            999999999999999999999998874 45677777765   3458999999999999999875  67889988899999


Q ss_pred             EEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCC
Q 013274          195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGN  274 (446)
Q Consensus       195 sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (446)
                      +|.....   .+++||.||++|.||+|.+....-                                              
T Consensus       150 Si~v~~h---eIvaGS~DGtvRtydiR~G~l~sD----------------------------------------------  180 (307)
T KOG0316|consen  150 SIDVAEH---EIVAGSVDGTVRTYDIRKGTLSSD----------------------------------------------  180 (307)
T ss_pred             EEEeccc---EEEeeccCCcEEEEEeecceeehh----------------------------------------------
Confidence            9998642   478999999999999997632100                                              


Q ss_pred             ceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEee
Q 013274          275 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQ  354 (446)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~  354 (446)
                                                    ..+  .||+++.|++||+.++.++.|++||+-|-++++- +..+... .+
T Consensus       181 ------------------------------y~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tGkl-L~sYkGh-kn  226 (307)
T KOG0316|consen  181 ------------------------------YFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKL-LKSYKGH-KN  226 (307)
T ss_pred             ------------------------------hcC--CcceeEEecCCCCEEEEeeccceeeecccchhHH-HHHhccc-cc
Confidence                                          012  3699999999999999999999999999888752 2222211 11


Q ss_pred             cCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccc-eEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274          355 TSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEY-VNCCCFSSQDQELYTGGNDRQILVWCPS  426 (446)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~-v~~~~fSpd~~~lvtgs~D~~v~vW~~~  426 (446)
                      ++.....++......+++++. +.+.+||+.+...+..++.|... |.+++++|--..|.++. ++.+..|.-+
T Consensus       227 ~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~~~  299 (307)
T KOG0316|consen  227 MEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFWYQE  299 (307)
T ss_pred             ceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEec-CCceeceeeh
Confidence            223334455555666666654 57899999999999999999988 89999999877777664 4455666443

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.97  E-value=9.8e-29  Score=212.62  Aligned_cols=254  Identities=24%  Similarity=0.362  Sum_probs=210.9

Q ss_pred             cccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCC-ceEEeeeccCCCCceEEEEeeCCCcEEEEe
Q 013274           98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPG-KVYRTAMSPLAASHMLIAAGTEDVQVRLCD  176 (446)
Q Consensus        98 ~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lasgs~d~~v~vwd  176 (446)
                      .+.||.+.|.++-|.+ |.++++|+|.||.+.|||.-+...+..++++. .+...+++|.   ...+|+|+.|+...||+
T Consensus        50 ~LkGH~~Ki~~~~ws~-Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPS---g~~VAcGGLdN~Csiy~  125 (343)
T KOG0286|consen   50 TLKGHLNKIYAMDWST-DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPS---GNFVACGGLDNKCSIYP  125 (343)
T ss_pred             EecccccceeeeEecC-CcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCC---CCeEEecCcCceeEEEe
Confidence            4569999999999987 88999999999999999998877777777764 4677788874   46899999999999999


Q ss_pred             CCCC------ceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeec
Q 013274          177 IASG------AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSIS  250 (446)
Q Consensus       177 ~~~~------~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (446)
                      +.+.      ...+.+.+|.+.+.+..|.++++  |+|+|.|.+..+||+.+++.+..                      
T Consensus       126 ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~--ilT~SGD~TCalWDie~g~~~~~----------------------  181 (343)
T KOG0286|consen  126 LSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH--ILTGSGDMTCALWDIETGQQTQV----------------------  181 (343)
T ss_pred             cccccccccceeeeeecCccceeEEEEEcCCCc--eEecCCCceEEEEEcccceEEEE----------------------
Confidence            9855      34567999999999999998764  57999999999999988754322                      


Q ss_pred             cccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEcc-CCCEEEEeec
Q 013274          251 KSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE-DGMYLLSAGS  329 (446)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~sgs~  329 (446)
                                                                            +.+|.+.|.+|+++| +++.++||+-
T Consensus       182 ------------------------------------------------------f~GH~gDV~slsl~p~~~ntFvSg~c  207 (343)
T KOG0286|consen  182 ------------------------------------------------------FHGHTGDVMSLSLSPSDGNTFVSGGC  207 (343)
T ss_pred             ------------------------------------------------------ecCCcccEEEEecCCCCCCeEEeccc
Confidence                                                                  247999999999999 9999999999


Q ss_pred             CCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCC-ceEEEEeecCceEEEeccc--ccceEEEEEcC
Q 013274          330 DSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMT-AVKAFDIWSGKTCLTFRGH--YEYVNCCCFSS  406 (446)
Q Consensus       330 D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~l~gH--~~~v~~~~fSp  406 (446)
                      |+..++||++.+...+ .|   .-+.+-...+.|.|++.-++.++.+ .++++|+.....+..|...  ...|++|+||-
T Consensus       208 D~~aklWD~R~~~c~q-tF---~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~  283 (343)
T KOG0286|consen  208 DKSAKLWDVRSGQCVQ-TF---EGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSK  283 (343)
T ss_pred             ccceeeeeccCcceeE-ee---cccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcc
Confidence            9999999999875432 22   2234456678999999988887764 7899999988888877733  45789999999


Q ss_pred             CCCEEEEeeCCCcEEEeCCCCCCCCCcCCCc
Q 013274          407 QDQELYTGGNDRQILVWCPSRHISDGVDAGP  437 (446)
Q Consensus       407 d~~~lvtgs~D~~v~vW~~~~~~~~~~~~~~  437 (446)
                      .|++|..|..|.++.|||.=.+..-+++.|-
T Consensus       284 SGRlLfagy~d~~c~vWDtlk~e~vg~L~GH  314 (343)
T KOG0286|consen  284 SGRLLFAGYDDFTCNVWDTLKGERVGVLAGH  314 (343)
T ss_pred             cccEEEeeecCCceeEeeccccceEEEeecc
Confidence            9999999999999999998776666666654

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.97  E-value=1.5e-28  Score=226.67  Aligned_cols=298  Identities=19%  Similarity=0.306  Sum_probs=225.2

Q ss_pred             eEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC
Q 013274           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (446)
Q Consensus        37 ~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~  116 (446)
                      .+.+.|...++-.+|+|. |-|++||..-|+|||||....+      ++.         +.++..-.+.|..+.|.+ ++
T Consensus        53 ~iYtEH~~~vtVAkySPs-G~yiASGD~sG~vRIWdtt~~~------hiL---------Knef~v~aG~I~Di~Wd~-ds  115 (603)
T KOG0318|consen   53 DIYTEHAHQVTVAKYSPS-GFYIASGDVSGKVRIWDTTQKE------HIL---------KNEFQVLAGPIKDISWDF-DS  115 (603)
T ss_pred             eeeccccceeEEEEeCCC-ceEEeecCCcCcEEEEeccCcc------eee---------eeeeeecccccccceeCC-CC
Confidence            356789999999999986 7799999999999999975432      111         122234456788888987 67


Q ss_pred             cEEEEEeC--C--CeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCC
Q 013274          117 GLFVTGSY--D--HYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD  191 (446)
Q Consensus       117 ~~l~s~s~--D--~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~  191 (446)
                      ++++..++  +  +.+.+||.  +.-+-.+. +...++++.+.|.-  ..++++|+.|+.|-+|.--.-+...++..|..
T Consensus       116 ~RI~avGEGrerfg~~F~~DS--G~SvGei~GhSr~ins~~~KpsR--PfRi~T~sdDn~v~ffeGPPFKFk~s~r~Hsk  191 (603)
T KOG0318|consen  116 KRIAAVGEGRERFGHVFLWDS--GNSVGEITGHSRRINSVDFKPSR--PFRIATGSDDNTVAFFEGPPFKFKSSFREHSK  191 (603)
T ss_pred             cEEEEEecCccceeEEEEecC--CCccceeeccceeEeeeeccCCC--ceEEEeccCCCeEEEeeCCCeeeeeccccccc
Confidence            77766554  3  45677764  33333333 22345666676643  46899999999999998766677778889999


Q ss_pred             CeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCcccccc
Q 013274          192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSA  271 (446)
Q Consensus       192 ~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (446)
                      -|.+|.|+||++. |+|++.||+|.+||=.++..+..++.                                        
T Consensus       192 FV~~VRysPDG~~-Fat~gsDgki~iyDGktge~vg~l~~----------------------------------------  230 (603)
T KOG0318|consen  192 FVNCVRYSPDGSR-FATAGSDGKIYIYDGKTGEKVGELED----------------------------------------  230 (603)
T ss_pred             ceeeEEECCCCCe-EEEecCCccEEEEcCCCccEEEEecC----------------------------------------
Confidence            9999999999985 79999999999999777654333210                                        


Q ss_pred             CCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEE
Q 013274          272 NGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV  351 (446)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~  351 (446)
                                                       ..+|.|.|.+|+|+||++.++|.|.|.++||||+.+.+...    +.
T Consensus       231 ---------------------------------~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~----t~  273 (603)
T KOG0318|consen  231 ---------------------------------SDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVS----TW  273 (603)
T ss_pred             ---------------------------------CCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEE----Ee
Confidence                                             13789999999999999999999999999999999874321    11


Q ss_pred             EeecC-CCeEE-EEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCC
Q 013274          352 RLQTS-KPIQL-ATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI  429 (446)
Q Consensus       352 ~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~  429 (446)
                      .+... ..+++ +.-....++.+...+.+..++..+.+...++.||...|++++.+||+++|+|||.||.|.-|+...+.
T Consensus       274 ~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~  353 (603)
T KOG0318|consen  274 PMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGT  353 (603)
T ss_pred             ecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcc
Confidence            11111 11222 23335566666677788999998999999999999999999999999999999999999999999888


Q ss_pred             CCCc
Q 013274          430 SDGV  433 (446)
Q Consensus       430 ~~~~  433 (446)
                      .+++
T Consensus       354 ~~~~  357 (603)
T KOG0318|consen  354 SDRL  357 (603)
T ss_pred             cccc
Confidence            8754

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=1e-28  Score=236.29  Aligned_cols=359  Identities=18%  Similarity=0.306  Sum_probs=228.3

Q ss_pred             cceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEe
Q 013274           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS  123 (446)
Q Consensus        44 ~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s  123 (446)
                      ..|+|++-++ +..+||.|..||.|+||++.....                 .-++.||+.+|+.+.+.. .|.+|+|||
T Consensus        66 ~evt~l~~~~-d~l~lAVGYaDGsVqif~~~s~~~-----------------~~tfngHK~AVt~l~fd~-~G~rlaSGs  126 (888)
T KOG0306|consen   66 AEVTCLRSSD-DILLLAVGYADGSVQIFSLESEEI-----------------LITFNGHKAAVTTLKFDK-IGTRLASGS  126 (888)
T ss_pred             ceEEEeeccC-CcceEEEEecCceEEeeccCCCce-----------------eeeecccccceEEEEEcc-cCceEeecC
Confidence            5889998874 677899999999999999875421                 113469999999887764 789999999


Q ss_pred             CCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCC
Q 013274          124 YDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSE  203 (446)
Q Consensus       124 ~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~  203 (446)
                      .|+.|.+||+-.......+.  |+-..+.-..+..+..++++.+.|+.|++||+++..+..+.-.|.+.++++++.+  +
T Consensus       127 kDt~IIvwDlV~E~Gl~rL~--GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~  202 (888)
T KOG0306|consen  127 KDTDIIVWDLVGEEGLFRLR--GHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--K  202 (888)
T ss_pred             CCccEEEEEeccceeeEEee--cchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--c
Confidence            99999999997666555444  4322222112223456888999999999999999999999999999999999986  3


Q ss_pred             eEEEEeeCCCcEEEEEccC----------Cce--------------eEEeeccccc----ccCC----------------
Q 013274          204 WILVTGGCDGAIRFWDIRR----------AGC--------------FRVLDQSQSQ----LGRR----------------  239 (446)
Q Consensus       204 ~~l~S~s~Dg~I~iWd~~~----------~~~--------------~~~~~~~~~~----~~~~----------------  239 (446)
                       .+++++.|+.+++|++..          ..+              +.........    .|..                
T Consensus       203 -~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k  281 (888)
T KOG0306|consen  203 -LLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAK  281 (888)
T ss_pred             -eEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHH
Confidence             578999999999999811          100              0000000000    0000                


Q ss_pred             ------------Cc--ccccceeec-------------------cccccCCCC-----------------CcCCCC-cc-
Q 013274          240 ------------PP--LLKRKVSIS-------------------KSLSAGQNS-----------------SVKPRA-PQ-  267 (446)
Q Consensus       240 ------------~~--~~~~~~~~~-------------------~~~~~~~~~-----------------~~~~~~-~~-  267 (446)
                                  ..  .....+..+                   .........                 ...... +. 
T Consensus       282 ~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~  361 (888)
T KOG0306|consen  282 ILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEA  361 (888)
T ss_pred             HHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccc
Confidence                        00  000000000                   000000000                 000000 00 


Q ss_pred             ---------ccccCCCceeecccceeecCC---cccc--------------------ccCCCc----------------c
Q 013274          268 ---------KRSANGNGVRQSSVGRIPAKG---SVRQ--------------------RLHPGM----------------L  299 (446)
Q Consensus       268 ---------~~~~~~~~~~~~~~~~~~~~~---~~~~--------------------~~~~~~----------------~  299 (446)
                               ....+...+..+....+.+++   ++..                    ..-++.                +
T Consensus       362 ~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdl  441 (888)
T KOG0306|consen  362 DRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDL  441 (888)
T ss_pred             cccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEe
Confidence                     000001111111111111111   0000                    000000                0


Q ss_pred             cc---cccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCce------eeeee-eEEEee-cCCCeEEEEcCCCc
Q 013274          300 SS---QDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRN------TLVNF-ETVRLQ-TSKPIQLATTQDPA  368 (446)
Q Consensus       300 ~~---~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~------~~~~~-~~~~~~-~~~~~~~~~~~~~~  368 (446)
                      ..   .....+|.+.|..++.+||++.++|||.|.+|++||+.--..      ....+ ....+. ......+.++||+.
T Consensus       442 aS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk  521 (888)
T KOG0306|consen  442 ASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK  521 (888)
T ss_pred             ehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc
Confidence            00   012358999999999999999999999999999999763211      00000 011111 23455688999999


Q ss_pred             EEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274          369 VVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS  426 (446)
Q Consensus       369 ~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~  426 (446)
                      +++++.. .+++++.+.+-+..-+|.||.-+|.||.+|||+++++|||.|.+|+||-++
T Consensus       522 ~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLd  580 (888)
T KOG0306|consen  522 LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD  580 (888)
T ss_pred             EEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccc
Confidence            9998865 589999999999999999999999999999999999999999999999876

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=8e-30  Score=239.25  Aligned_cols=250  Identities=20%  Similarity=0.356  Sum_probs=205.5

Q ss_pred             eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (446)
Q Consensus        39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~  118 (446)
                      +..|+..|.++.|.|. ...++++=-.|.|.|||-++....         +.+        +--.-+|.++.|.+ .-+.
T Consensus         9 ~~~rSdRVKsVd~HPt-ePw~la~LynG~V~IWnyetqtmV---------ksf--------eV~~~PvRa~kfia-RknW   69 (794)
T KOG0276|consen    9 FQSRSDRVKSVDFHPT-EPWILAALYNGDVQIWNYETQTMV---------KSF--------EVSEVPVRAAKFIA-RKNW   69 (794)
T ss_pred             hhccCCceeeeecCCC-CceEEEeeecCeeEEEecccceee---------eee--------eecccchhhheeee-ccce
Confidence            4568999999999986 567888888999999998765421         111        11223466666765 4569


Q ss_pred             EEEEeCCCeEEEEECCCCeeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC-ceeeeeeCCCCCeEEE
Q 013274          119 FVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AISQTLSGHRDGIMTV  196 (446)
Q Consensus       119 l~s~s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~-~~~~~l~~h~~~v~sv  196 (446)
                      +++||+|..|||++.++++.+..|.. +.-+.+++.+|..   .+++++|.|-.|++||-+.+ .+.+++.||...|++|
T Consensus        70 iv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~---P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv  146 (794)
T KOG0276|consen   70 IVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTL---PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQV  146 (794)
T ss_pred             EEEecCCceEEEEecccceeeEEeeccccceeeeeecCCC---CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEE
Confidence            99999999999999999999988874 4557788888854   48999999999999999887 6789999999999999


Q ss_pred             EEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCce
Q 013274          197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGV  276 (446)
Q Consensus       197 ~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (446)
                      +|.|.+...|+|+|-|++|++|.+.+..+..                                                 
T Consensus       147 ~fnPkD~ntFaS~sLDrTVKVWslgs~~~nf-------------------------------------------------  177 (794)
T KOG0276|consen  147 AFNPKDPNTFASASLDRTVKVWSLGSPHPNF-------------------------------------------------  177 (794)
T ss_pred             EecCCCccceeeeeccccEEEEEcCCCCCce-------------------------------------------------
Confidence            9999988889999999999999986432211                                                 


Q ss_pred             eecccceeecCCccccccCCCcccccccccccccCeEEEEEccCC--CEEEEeecCCcEEEEecCcCceeeeeeeEEEee
Q 013274          277 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG--MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQ  354 (446)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg--~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~  354 (446)
                                                 .+.+|..-|+|++|-+.|  .||+||+.|.+||+||..+..            
T Consensus       178 ---------------------------Tl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~------------  218 (794)
T KOG0276|consen  178 ---------------------------TLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS------------  218 (794)
T ss_pred             ---------------------------eeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHH------------
Confidence                                       234788889999998755  699999999999999987542            


Q ss_pred             cCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCCCC
Q 013274          355 TSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISD  431 (446)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~~~  431 (446)
                                                       ++.+|.||+..|+.+.|+|.=..++|||+||+||||+..+.+++
T Consensus       219 ---------------------------------CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE  262 (794)
T KOG0276|consen  219 ---------------------------------CVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLE  262 (794)
T ss_pred             ---------------------------------HHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehh
Confidence                                             34678899999999999999999999999999999998877654

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=2.5e-30  Score=225.16  Aligned_cols=297  Identities=15%  Similarity=0.246  Sum_probs=229.9

Q ss_pred             EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (446)
Q Consensus        38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~  117 (446)
                      +.-+....+-|..||| |+.||+|||.||-|.+||..++...+.         ...-....+.-|..+|.|+.|+. |..
T Consensus       208 IKFg~KSh~EcA~FSP-DgqyLvsgSvDGFiEVWny~~GKlrKD---------LkYQAqd~fMMmd~aVlci~FSR-DsE  276 (508)
T KOG0275|consen  208 IKFGQKSHVECARFSP-DGQYLVSGSVDGFIEVWNYTTGKLRKD---------LKYQAQDNFMMMDDAVLCISFSR-DSE  276 (508)
T ss_pred             eecccccchhheeeCC-CCceEeeccccceeeeehhccchhhhh---------hhhhhhcceeecccceEEEeecc-cHH
Confidence            4446677789999997 689999999999999999877653210         00001123345778899988876 788


Q ss_pred             EEEEEeCCCeEEEEECCCCeeeEEEe--cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEE
Q 013274          118 LFVTGSYDHYVKVWDTNCTRVVMNFK--MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT  195 (446)
Q Consensus       118 ~l~s~s~D~~i~iWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~s  195 (446)
                      .+|||+.||.|++|.+.+|++++.|.  +...+.++.|+.+   +..+++++.|..+++.-+++|++++.++||...|+.
T Consensus       277 MlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD---~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~  353 (508)
T KOG0275|consen  277 MLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRD---NSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNE  353 (508)
T ss_pred             HhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccC---cchhhcccccceEEEeccccchhHHHhcCccccccc
Confidence            99999999999999999999999886  4455777777764   447889999999999999999999999999999999


Q ss_pred             EEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCc
Q 013274          196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNG  275 (446)
Q Consensus       196 v~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (446)
                      +.|.++|.+ ++|+|.||+|++|+.++..|+..++...                                          
T Consensus       354 a~ft~dG~~-iisaSsDgtvkvW~~KtteC~~Tfk~~~------------------------------------------  390 (508)
T KOG0275|consen  354 ATFTDDGHH-IISASSDGTVKVWHGKTTECLSTFKPLG------------------------------------------  390 (508)
T ss_pred             eEEcCCCCe-EEEecCCccEEEecCcchhhhhhccCCC------------------------------------------
Confidence            999999987 5899999999999999988876653211                                          


Q ss_pred             eeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCC-CEEEEeecCCcEEEEecCcCceeeeeeeEEEee
Q 013274          276 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQ  354 (446)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~  354 (446)
                                                      ..-+|+.+..-|.+ ..++.+...++|.+-++...  ....+......
T Consensus       391 --------------------------------~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ--vVrsfsSGkRE  436 (508)
T KOG0275|consen  391 --------------------------------TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ--VVRSFSSGKRE  436 (508)
T ss_pred             --------------------------------CcccceeEEEcCCCCceEEEEcCCCeEEEEeccce--EEeeeccCCcc
Confidence                                            12235555555543 35666777778888877642  11122222222


Q ss_pred             cCCCeEEEEcCCCcEEEEeCCC-ceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCC
Q 013274          355 TSKPIQLATTQDPAVVFVPCMT-AVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP  425 (446)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~  425 (446)
                      .+.-+..+.+|.+..++..+.+ ....|.+-+|++-+++..|+..|-.++-+|-.+.|+|-|+||.+++|.|
T Consensus       437 gGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWkp  508 (508)
T KOG0275|consen  437 GGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWKP  508 (508)
T ss_pred             CCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcCC
Confidence            2333567788888888876654 5588999999999999999999999999999999999999999999975

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=4.8e-29  Score=245.52  Aligned_cols=246  Identities=26%  Similarity=0.491  Sum_probs=201.7

Q ss_pred             ccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCe--eeEEE-ecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeC-
Q 013274          102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR--VVMNF-KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI-  177 (446)
Q Consensus       102 h~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~-  177 (446)
                      |...|.++.+++ ++..+++++.|+.+++|++....  .++.+ .+...+..++|+++.   .++++++.|.+|++||+ 
T Consensus       158 ~~~sv~~~~fs~-~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~---~~l~s~s~D~tiriwd~~  233 (456)
T KOG0266|consen  158 ECPSVTCVDFSP-DGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDG---SYLLSGSDDKTLRIWDLK  233 (456)
T ss_pred             ccCceEEEEEcC-CCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCC---cEEEEecCCceEEEeecc
Confidence            478898988887 78899999999999999996666  44443 233346778888754   48999999999999999 


Q ss_pred             CCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCC
Q 013274          178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQ  257 (446)
Q Consensus       178 ~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (446)
                      ..+...+++++|...|.+++|+|.++ +++||+.|++|||||++++++.+.+                            
T Consensus       234 ~~~~~~~~l~gH~~~v~~~~f~p~g~-~i~Sgs~D~tvriWd~~~~~~~~~l----------------------------  284 (456)
T KOG0266|consen  234 DDGRNLKTLKGHSTYVTSVAFSPDGN-LLVSGSDDGTVRIWDVRTGECVRKL----------------------------  284 (456)
T ss_pred             CCCeEEEEecCCCCceEEEEecCCCC-EEEEecCCCcEEEEeccCCeEEEee----------------------------
Confidence            55588999999999999999999995 6899999999999999987665433                            


Q ss_pred             CCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEe
Q 013274          258 NSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWD  337 (446)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd  337 (446)
                                                                      .+|.+.|++++|+++|.+|++++.|++|++||
T Consensus       285 ------------------------------------------------~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd  316 (456)
T KOG0266|consen  285 ------------------------------------------------KGHSDGISGLAFSPDGNLLVSASYDGTIRVWD  316 (456)
T ss_pred             ------------------------------------------------eccCCceEEEEECCCCCEEEEcCCCccEEEEE
Confidence                                                            46888899999999999999999999999999


Q ss_pred             cCcCcee-eeeeeEEEeecCCCeEEEEcCCCcEEEEeCCC-ceEEEEeecCceEEEecccccc---eEEEEEcCCCCEEE
Q 013274          338 VESGRNT-LVNFETVRLQTSKPIQLATTQDPAVVFVPCMT-AVKAFDIWSGKTCLTFRGHYEY---VNCCCFSSQDQELY  412 (446)
Q Consensus       338 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~l~gH~~~---v~~~~fSpd~~~lv  412 (446)
                      +.++... ...+....... ....+.+++++..++++..+ .+++||+..++...++.+|...   +.+..+++++++++
T Consensus       317 ~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  395 (456)
T KOG0266|consen  317 LETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIY  395 (456)
T ss_pred             CCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEE
Confidence            9997632 11111111111 34678899999999998876 8999999999999999999884   45666788999999


Q ss_pred             EeeCCCcEEEeCCCCCC
Q 013274          413 TGGNDRQILVWCPSRHI  429 (446)
Q Consensus       413 tgs~D~~v~vW~~~~~~  429 (446)
                      +|+.|+.|.+|++....
T Consensus       396 sg~~d~~v~~~~~~s~~  412 (456)
T KOG0266|consen  396 SGSEDGSVYVWDSSSGG  412 (456)
T ss_pred             EEeCCceEEEEeCCccc
Confidence            99999999999998543

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2e-29  Score=222.74  Aligned_cols=248  Identities=21%  Similarity=0.383  Sum_probs=196.2

Q ss_pred             ccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeC
Q 013274           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI  177 (446)
Q Consensus        99 ~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~  177 (446)
                      ..||...|+.+.++| +.-+++++++|.+|++||..+++++..+. +...+..+++...   +.++++++.|-.+++||.
T Consensus       104 l~g~r~~vt~v~~hp-~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~---Gk~l~tcSsDl~~~LWd~  179 (406)
T KOG0295|consen  104 LAGHRSSVTRVIFHP-SEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDAS---GKYLATCSSDLSAKLWDF  179 (406)
T ss_pred             hhccccceeeeeecc-CceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecC---ccEEEecCCccchhheeH
Confidence            358999999999987 66789999999999999999999876554 2333666666653   468999999999999999


Q ss_pred             CC-CceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccC
Q 013274          178 AS-GAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAG  256 (446)
Q Consensus       178 ~~-~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (446)
                      ++ ..+++.+.+|...|.+|.|-|.+.+ ++|++.|.+|+.|++.++-|++.+                           
T Consensus       180 ~~~~~c~ks~~gh~h~vS~V~f~P~gd~-ilS~srD~tik~We~~tg~cv~t~---------------------------  231 (406)
T KOG0295|consen  180 DTFFRCIKSLIGHEHGVSSVFFLPLGDH-ILSCSRDNTIKAWECDTGYCVKTF---------------------------  231 (406)
T ss_pred             HHHHHHHHHhcCcccceeeEEEEecCCe-eeecccccceeEEecccceeEEec---------------------------
Confidence            87 4678899999999999999999976 689999999999999988766544                           


Q ss_pred             CCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEE
Q 013274          257 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW  336 (446)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lW  336 (446)
                                                                       .+|...|..+..+.||..++|++.|.+|++|
T Consensus       232 -------------------------------------------------~~h~ewvr~v~v~~DGti~As~s~dqtl~vW  262 (406)
T KOG0295|consen  232 -------------------------------------------------PGHSEWVRMVRVNQDGTIIASCSNDQTLRVW  262 (406)
T ss_pred             -------------------------------------------------cCchHhEEEEEecCCeeEEEecCCCceEEEE
Confidence                                                             3566679999999999999999999999999


Q ss_pred             ecCcCceeee------eeeEEEeecC---CCeEEEEc-C-CCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEE
Q 013274          337 DVESGRNTLV------NFETVRLQTS---KPIQLATT-Q-DPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCF  404 (446)
Q Consensus       337 d~~~~~~~~~------~~~~~~~~~~---~~~~~~~~-~-~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~f  404 (446)
                      -+.++.....      ..+.......   +.+.-+.. . .+.++.++.. ..+++||+.++.++.+|.||.++|..++|
T Consensus       263 ~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af  342 (406)
T KOG0295|consen  263 VVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAF  342 (406)
T ss_pred             EeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEE
Confidence            9988732211      1111111110   11111111 1 1234555544 47899999999999999999999999999


Q ss_pred             cCCCCEEEEeeCCCcEEEeCCCC
Q 013274          405 SSQDQELYTGGNDRQILVWCPSR  427 (446)
Q Consensus       405 Spd~~~lvtgs~D~~v~vW~~~~  427 (446)
                      +|-|++|+||.+|++++||++..
T Consensus       343 ~p~Gkyi~ScaDDktlrvwdl~~  365 (406)
T KOG0295|consen  343 SPGGKYILSCADDKTLRVWDLKN  365 (406)
T ss_pred             cCCCeEEEEEecCCcEEEEEecc
Confidence            99999999999999999999874

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=1.8e-30  Score=228.02  Aligned_cols=233  Identities=23%  Similarity=0.395  Sum_probs=182.6

Q ss_pred             cccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc
Q 013274          103 KYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA  181 (446)
Q Consensus       103 ~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~  181 (446)
                      ..+|+|+..   |.+.++||..|.+|+|||.++..+++.+. ++|.+.++.+.     ..++++||+|.+|++||+++++
T Consensus       197 skgVYClQY---DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd-----~rviisGSSDsTvrvWDv~tge  268 (499)
T KOG0281|consen  197 SKGVYCLQY---DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD-----ERVIVSGSSDSTVRVWDVNTGE  268 (499)
T ss_pred             CCceEEEEe---cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc-----ceEEEecCCCceEEEEeccCCc
Confidence            356777655   45689999999999999999887776554 45666655553     3589999999999999999999


Q ss_pred             eeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCc
Q 013274          182 ISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSV  261 (446)
Q Consensus       182 ~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (446)
                      ++.++-+|...|..+.|+.+   +++|+|.|.+|++||+......                                   
T Consensus       269 ~l~tlihHceaVLhlrf~ng---~mvtcSkDrsiaVWdm~sps~i-----------------------------------  310 (499)
T KOG0281|consen  269 PLNTLIHHCEAVLHLRFSNG---YMVTCSKDRSIAVWDMASPTDI-----------------------------------  310 (499)
T ss_pred             hhhHHhhhcceeEEEEEeCC---EEEEecCCceeEEEeccCchHH-----------------------------------
Confidence            99999999999999999742   5899999999999998642100                                   


Q ss_pred             CCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcC
Q 013274          262 KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG  341 (446)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~  341 (446)
                                                            +..-.+.||-.+|+.+.|+.  +|++|+|.|++||+|++.++
T Consensus       311 --------------------------------------t~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~~st~  350 (499)
T KOG0281|consen  311 --------------------------------------TLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTC  350 (499)
T ss_pred             --------------------------------------HHHHHHhhhhhheeeecccc--ceEEEecCCceEEEEeccce
Confidence                                                  00001357888999999974  59999999999999999886


Q ss_pred             ceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcE
Q 013274          342 RNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQI  420 (446)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v  420 (446)
                      ...    ..+..+  ..-.+++-..+.++++++. .++++||+..|.+++.|.||+.-|.|+.|  |.+.+|||..||+|
T Consensus       351 efv----Rtl~gH--kRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGki  422 (499)
T KOG0281|consen  351 EFV----RTLNGH--KRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKI  422 (499)
T ss_pred             eee----hhhhcc--cccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccceE
Confidence            431    111111  1122344445666666644 68999999999999999999999999999  78999999999999


Q ss_pred             EEeCCCCCC
Q 013274          421 LVWCPSRHI  429 (446)
Q Consensus       421 ~vW~~~~~~  429 (446)
                      |||++...+
T Consensus       423 kvWdl~aal  431 (499)
T KOG0281|consen  423 KVWDLQAAL  431 (499)
T ss_pred             EEEeccccc
Confidence            999987554

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=2.3e-28  Score=240.38  Aligned_cols=278  Identities=23%  Similarity=0.393  Sum_probs=218.1

Q ss_pred             CccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEE
Q 013274           42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT  121 (446)
Q Consensus        42 H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s  121 (446)
                      |...+.+++|.   +.++++++.|++|++||..++...                ...+.||.+.|+++.+.. .+..+++
T Consensus       207 ~~~~~~~~q~~---~~~~~~~s~~~tl~~~~~~~~~~i----------------~~~l~GH~g~V~~l~~~~-~~~~lvs  266 (537)
T KOG0274|consen  207 DDHVVLCLQLH---DGFFKSGSDDSTLHLWDLNNGYLI----------------LTRLVGHFGGVWGLAFPS-GGDKLVS  266 (537)
T ss_pred             Ccchhhhheee---cCeEEecCCCceeEEeecccceEE----------------EeeccCCCCCceeEEEec-CCCEEEE
Confidence            55778899996   357999999999999998765421                122569999999988765 5789999


Q ss_pred             EeCCCeEEEEECCCCeeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEec
Q 013274          122 GSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWST  200 (446)
Q Consensus       122 ~s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~  200 (446)
                      ||.|.++++||..++++...+.. .+.+.++...+     .++++|+.|.+|++|+++++.++..+.+|.++|.+|... 
T Consensus       267 gS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~-----~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-  340 (537)
T KOG0274|consen  267 GSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP-----FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-  340 (537)
T ss_pred             EecCCcEEeEecCCCcEEEEecCCCceEEEEEccC-----ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-
Confidence            99999999999999999988873 33344444433     467889999999999999999999999999999999987 


Q ss_pred             CCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecc
Q 013274          201 SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSS  280 (446)
Q Consensus       201 ~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (446)
                       +. ++++|+.|++|++||+++++|++.+                                                   
T Consensus       341 -~~-~lvsgs~d~~v~VW~~~~~~cl~sl---------------------------------------------------  367 (537)
T KOG0274|consen  341 -EP-LLVSGSYDGTVKVWDPRTGKCLKSL---------------------------------------------------  367 (537)
T ss_pred             -CC-EEEEEecCceEEEEEhhhceeeeee---------------------------------------------------
Confidence             33 5899999999999999987765543                                                   


Q ss_pred             cceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcC-ceeeeeeeEEEeecCCCe
Q 013274          281 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG-RNTLVNFETVRLQTSKPI  359 (446)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~-~~~~~~~~~~~~~~~~~~  359 (446)
                                               .+|.++|.++.+.+. .++++|+.|++|++||+.+. +...    .+..+.+...
T Consensus       368 -------------------------~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~----tl~~h~~~v~  417 (537)
T KOG0274|consen  368 -------------------------SGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIH----TLQGHTSLVS  417 (537)
T ss_pred             -------------------------cCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhh----hhcCCccccc
Confidence                                     468899999988766 89999999999999999987 4321    1111111111


Q ss_pred             EEEEcCCCcEEEEe-CCCceEEEEeecCceEEEecc-cccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCCCCC
Q 013274          360 QLATTQDPAVVFVP-CMTAVKAFDIWSGKTCLTFRG-HYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDG  432 (446)
Q Consensus       360 ~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~l~g-H~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~~~~  432 (446)
                      .  .......+.+. ++..+++||..+++.++++.+ |...|+.+++.  ...+++++.|+++++|+++.+..-+
T Consensus       418 ~--l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~  488 (537)
T KOG0274|consen  418 S--LLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIR  488 (537)
T ss_pred             c--cccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhh
Confidence            1  11223444444 446799999999999999999 78999999887  5678899999999999998765443

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=2.1e-28  Score=217.44  Aligned_cols=280  Identities=21%  Similarity=0.361  Sum_probs=210.0

Q ss_pred             CCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC--cE
Q 013274           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT--GL  118 (446)
Q Consensus        41 ~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~--~~  118 (446)
                      -|..=|.+++..   +++|+||+-||++++||.+....                  ....||.+.|.++++...+.  ..
T Consensus       103 ~hdDWVSsv~~~---~~~IltgsYDg~~riWd~~Gk~~------------------~~~~Ght~~ik~v~~v~~n~~~~~  161 (423)
T KOG0313|consen  103 LHDDWVSSVKGA---SKWILTGSYDGTSRIWDLKGKSI------------------KTIVGHTGPIKSVAWVIKNSSSCL  161 (423)
T ss_pred             cchhhhhhhccc---CceEEEeecCCeeEEEecCCceE------------------EEEecCCcceeeeEEEecCCccce
Confidence            377778888775   47899999999999999763211                  12358999999888865443  47


Q ss_pred             EEEEeCCCeEEEEECCCCeeeEEE-----ecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCC---------------
Q 013274          119 FVTGSYDHYVKVWDTNCTRVVMNF-----KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA---------------  178 (446)
Q Consensus       119 l~s~s~D~~i~iWd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~---------------  178 (446)
                      |+|+|.|.++++|-.+.+......     .+...+.++...+   ++..+++||.|.++++|+.+               
T Consensus       162 fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~---sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rr  238 (423)
T KOG0313|consen  162 FVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDS---SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRR  238 (423)
T ss_pred             EEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecC---CCCeEEeecccceeeecccCCCccccccccchhhh
Confidence            999999999999988766432211     2233456666554   45689999999999999932               


Q ss_pred             ----------CCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCccccccee
Q 013274          179 ----------SGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVS  248 (446)
Q Consensus       179 ----------~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (446)
                                ++.++..+.||.++|.+|.|++..  .+.|+|+|.+|+.||+.++++...+.                  
T Consensus       239 k~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~--v~yS~SwDHTIk~WDletg~~~~~~~------------------  298 (423)
T KOG0313|consen  239 KKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDAT--VIYSVSWDHTIKVWDLETGGLKSTLT------------------  298 (423)
T ss_pred             hhhhhhhcccccCceEEecccccceeeEEEcCCC--ceEeecccceEEEEEeecccceeeee------------------
Confidence                      112455789999999999999843  57899999999999998876432210                  


Q ss_pred             eccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEee
Q 013274          249 ISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG  328 (446)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs  328 (446)
                                                                                 -.-++++++.+|..++|++|+
T Consensus       299 -----------------------------------------------------------~~ksl~~i~~~~~~~Ll~~gs  319 (423)
T KOG0313|consen  299 -----------------------------------------------------------TNKSLNCISYSPLSKLLASGS  319 (423)
T ss_pred             -----------------------------------------------------------cCcceeEeecccccceeeecC
Confidence                                                                       012478899999999999999


Q ss_pred             cCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEE-e-CCCceEEEEeecCc-eEEEecccccceEEEEEc
Q 013274          329 SDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFV-P-CMTAVKAFDIWSGK-TCLTFRGHYEYVNCCCFS  405 (446)
Q Consensus       329 ~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~d~~~~~-~~~~l~gH~~~v~~~~fS  405 (446)
                      .|..||+||.+++.-.++.. .+..+.+-...+..+|.....++ + .++.+++||+.+.+ .+..+.+|.+.|.++.|+
T Consensus       320 sdr~irl~DPR~~~gs~v~~-s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~  398 (423)
T KOG0313|consen  320 SDRHIRLWDPRTGDGSVVSQ-SLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN  398 (423)
T ss_pred             CCCceeecCCCCCCCceeEE-eeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc
Confidence            99999999999875444322 22222333445566666555444 3 45789999998776 899999999999999996


Q ss_pred             CCCCEEEEeeCCCcEEEeCC
Q 013274          406 SQDQELYTGGNDRQILVWCP  425 (446)
Q Consensus       406 pd~~~lvtgs~D~~v~vW~~  425 (446)
                       ++..++|||.|++|+|+.-
T Consensus       399 -~~~~IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  399 -EGGLIVSGGADNKLRIFKG  417 (423)
T ss_pred             -CCceEEeccCcceEEEecc
Confidence             6779999999999999854

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.8e-28  Score=237.21  Aligned_cols=270  Identities=22%  Similarity=0.340  Sum_probs=194.2

Q ss_pred             CCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcC------C--------------C-----------------CC
Q 013274           40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATD------Y--------------E-----------------GG   82 (446)
Q Consensus        40 ~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~------~--------------~-----------------~~   82 (446)
                      .+|.|+|++|.||+ +|+||||||.|+.|+||.+.....      .              +                 ..
T Consensus       264 ~ah~gaIw~mKFS~-DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~  342 (712)
T KOG0283|consen  264 NAHKGAIWAMKFSH-DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKG  342 (712)
T ss_pred             cccCCcEEEEEeCC-CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccc
Confidence            38999999999996 799999999999999998755100      0              0                 00


Q ss_pred             Ccccc---ccceEEecc---ccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccC
Q 013274           83 GHIAK---HRSVFVVDK---QHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPL  156 (446)
Q Consensus        83 ~~~~~---~~~~~~~~~---~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~  156 (446)
                      ...+.   ...+..+..   ..+.||.+.|..+.|+  ..++|+|+|.|+|||+|++...+++..|.++.-+.+++|.|.
T Consensus       343 ~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS--Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPv  420 (712)
T KOG0283|consen  343 SQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS--KNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPV  420 (712)
T ss_pred             cCCccccCCCccccccccchhhhhccchhheecccc--cCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEeccc
Confidence            00000   000111111   2346999999999997  467999999999999999999999999999999999999996


Q ss_pred             CCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccc
Q 013274          157 AASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQL  236 (446)
Q Consensus       157 ~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~  236 (446)
                      +  ..+|++||.|+.|+||++...+.+.-.. -.+-|++|+|.|+|++ .+.|+-+|.+++|+++..+..........  
T Consensus       421 D--DryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~-avIGt~~G~C~fY~t~~lk~~~~~~I~~~--  494 (712)
T KOG0283|consen  421 D--DRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKG-AVIGTFNGYCRFYDTEGLKLVSDFHIRLH--  494 (712)
T ss_pred             C--CCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCce-EEEEEeccEEEEEEccCCeEEEeeeEeec--
Confidence            4  4689999999999999998776554322 2378999999999997 57899999999999886543322210000  


Q ss_pred             cCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEE
Q 013274          237 GRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLK  316 (446)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  316 (446)
                                                                                 .      .+...|. .|+++-
T Consensus       495 -----------------------------------------------------------~------~Kk~~~~-rITG~Q  508 (712)
T KOG0283|consen  495 -----------------------------------------------------------N------KKKKQGK-RITGLQ  508 (712)
T ss_pred             -----------------------------------------------------------c------CccccCc-eeeeeE
Confidence                                                                       0      0011233 699999


Q ss_pred             EccCCC-EEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEeccc
Q 013274          317 VTEDGM-YLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGH  395 (446)
Q Consensus       317 fs~dg~-~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH  395 (446)
                      |.|... .|+..++|.+|||+|.......                                             ..|.|+
T Consensus       509 ~~p~~~~~vLVTSnDSrIRI~d~~~~~lv---------------------------------------------~KfKG~  543 (712)
T KOG0283|consen  509 FFPGDPDEVLVTSNDSRIRIYDGRDKDLV---------------------------------------------HKFKGF  543 (712)
T ss_pred             ecCCCCCeEEEecCCCceEEEeccchhhh---------------------------------------------hhhccc
Confidence            987543 4666789999999998543210                                             111111


Q ss_pred             c--cceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCC
Q 013274          396 Y--EYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI  429 (446)
Q Consensus       396 ~--~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~  429 (446)
                      .  ..=....|++||++||++|+|..|-||+.+.+.
T Consensus       544 ~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~  579 (712)
T KOG0283|consen  544 RNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN  579 (712)
T ss_pred             ccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence            0  112356799999999999999999999875443

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.96  E-value=3.1e-27  Score=249.41  Aligned_cols=246  Identities=15%  Similarity=0.280  Sum_probs=187.4

Q ss_pred             ccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCC----e----eeEEEecCCceEEeeeccCCCCceEEEEeeCCC
Q 013274           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT----R----VVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV  170 (446)
Q Consensus        99 ~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~  170 (446)
                      ..+|...|+++.|++ ++++|||||.|++|+|||+...    .    +...+.....+..+++.+..  ..+|++++.|+
T Consensus       479 ~~~~~~~V~~i~fs~-dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~~las~~~Dg  555 (793)
T PLN00181        479 LLNSSNLVCAIGFDR-DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYI--KSQVASSNFEG  555 (793)
T ss_pred             ccCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCC--CCEEEEEeCCC
Confidence            356899999999887 7889999999999999997532    1    12223333455666766542  35799999999


Q ss_pred             cEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeec
Q 013274          171 QVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSIS  250 (446)
Q Consensus       171 ~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (446)
                      .|++||+.++..+..+.+|.+.|++++|+|.+..+|+||+.|++|++||++++.++..+.                    
T Consensus       556 ~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~--------------------  615 (793)
T PLN00181        556 VVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK--------------------  615 (793)
T ss_pred             eEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe--------------------
Confidence            999999999999999999999999999997443468999999999999998754432221                    


Q ss_pred             cccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEc-cCCCEEEEeec
Q 013274          251 KSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVT-EDGMYLLSAGS  329 (446)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~sgs~  329 (446)
                                                                               +...|.++.|+ ++|.+|++|+.
T Consensus       616 ---------------------------------------------------------~~~~v~~v~~~~~~g~~latgs~  638 (793)
T PLN00181        616 ---------------------------------------------------------TKANICCVQFPSESGRSLAFGSA  638 (793)
T ss_pred             ---------------------------------------------------------cCCCeEEEEEeCCCCCEEEEEeC
Confidence                                                                     11347888885 57999999999


Q ss_pred             CCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEe-CCCceEEEEeec------CceEEEecccccceEEE
Q 013274          330 DSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVP-CMTAVKAFDIWS------GKTCLTFRGHYEYVNCC  402 (446)
Q Consensus       330 D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~------~~~~~~l~gH~~~v~~~  402 (446)
                      |++|++||+.+.+....   ....+......+.+. ++..++++ .+..+++||+..      .+.+.++.+|...++++
T Consensus       639 dg~I~iwD~~~~~~~~~---~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v  714 (793)
T PLN00181        639 DHKVYYYDLRNPKLPLC---TMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFV  714 (793)
T ss_pred             CCeEEEEECCCCCccce---EecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEE
Confidence            99999999987542111   111222334455565 44455444 556899999864      35678999999999999


Q ss_pred             EEcCCCCEEEEeeCCCcEEEeCCCCC
Q 013274          403 CFSSQDQELYTGGNDRQILVWCPSRH  428 (446)
Q Consensus       403 ~fSpd~~~lvtgs~D~~v~vW~~~~~  428 (446)
                      +|+|++++|++|+.|++|+||+...+
T Consensus       715 ~~s~~~~~lasgs~D~~v~iw~~~~~  740 (793)
T PLN00181        715 GLSVSDGYIATGSETNEVFVYHKAFP  740 (793)
T ss_pred             EEcCCCCEEEEEeCCCEEEEEECCCC
Confidence            99999999999999999999987543

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1e-27  Score=232.97  Aligned_cols=315  Identities=17%  Similarity=0.283  Sum_probs=235.7

Q ss_pred             CccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEE
Q 013274           42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT  121 (446)
Q Consensus        42 H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s  121 (446)
                      -+..|..|+|.|. -..++++=..|.|++||-.-++..                 ..+.+|.++|..+.|+| ...+|+|
T Consensus         8 kSsRvKglsFHP~-rPwILtslHsG~IQlWDYRM~tli-----------------~rFdeHdGpVRgv~FH~-~qplFVS   68 (1202)
T KOG0292|consen    8 KSSRVKGLSFHPK-RPWILTSLHSGVIQLWDYRMGTLI-----------------DRFDEHDGPVRGVDFHP-TQPLFVS   68 (1202)
T ss_pred             ccccccceecCCC-CCEEEEeecCceeeeehhhhhhHH-----------------hhhhccCCccceeeecC-CCCeEEe
Confidence            3567889999986 458889999999999998765532                 23468999999999998 6789999


Q ss_pred             EeCCCeEEEEECCCCeeeEEEecCCc---eEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEE
Q 013274          122 GSYDHYVKVWDTNCTRVVMNFKMPGK---VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEW  198 (446)
Q Consensus       122 ~s~D~~i~iWd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~  198 (446)
                      ||+|-+|++|+.++.+++.++.  |+   +..+.|++   .-..|+|+|.|-+|+||+..+++++..+.||+..|+|..|
T Consensus        69 GGDDykIkVWnYk~rrclftL~--GHlDYVRt~~FHh---eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqF  143 (1202)
T KOG0292|consen   69 GGDDYKIKVWNYKTRRCLFTLL--GHLDYVRTVFFHH---EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQF  143 (1202)
T ss_pred             cCCccEEEEEecccceehhhhc--cccceeEEeeccC---CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeecc
Confidence            9999999999999988876554  44   44455554   4458999999999999999999999999999999999999


Q ss_pred             ecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceee
Q 013274          199 STSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQ  278 (446)
Q Consensus       199 s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (446)
                      .|... +++|+|-|.+||+||+.....      .+...+....                    ..+..+   .++     
T Consensus       144 hptED-lIVSaSLDQTVRVWDisGLRk------k~~~pg~~e~--------------------~~~~~~---~~~-----  188 (1202)
T KOG0292|consen  144 HPTED-LIVSASLDQTVRVWDISGLRK------KNKAPGSLED--------------------QMRGQQ---GNS-----  188 (1202)
T ss_pred             CCccc-eEEEecccceEEEEeecchhc------cCCCCCCchh--------------------hhhccc---cch-----
Confidence            99766 579999999999999864210      0000000000                    000000   000     


Q ss_pred             cccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCC
Q 013274          279 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKP  358 (446)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~  358 (446)
                          .  .-+..+.       .-...+.||..-|+-++|+|.-..++||+.|+.||+|.+...+.  =...+...+.+..
T Consensus       189 ----d--Lfg~~Da-------VVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa--WEvDtcrgH~nnV  253 (1202)
T KOG0292|consen  189 ----D--LFGQTDA-------VVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA--WEVDTCRGHYNNV  253 (1202)
T ss_pred             ----h--hcCCcCe-------eeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc--eeehhhhcccCCc
Confidence                0  0000000       00112468999999999999999999999999999998875432  1233444456677


Q ss_pred             eEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCCCC
Q 013274          359 IQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISD  431 (446)
Q Consensus       359 ~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~~~  431 (446)
                      ..+.|.|....+.+.+. ..+++||+.+++.+.+|+...++.++++-+|..++++ ++.|+-+.|+.+++.++.
T Consensus       254 ssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfA-AgHDsGm~VFkleRErpa  326 (1202)
T KOG0292|consen  254 SSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFA-AGHDSGMIVFKLERERPA  326 (1202)
T ss_pred             ceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceee-eecCCceEEEEEcccCce
Confidence            77888888788777655 5899999999999999999999999999999998876 557888899988765544

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=8.6e-28  Score=200.82  Aligned_cols=241  Identities=19%  Similarity=0.414  Sum_probs=191.6

Q ss_pred             cCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCc-eEEeeeccCCCCceEEEEeeCCCcEEEEeCC
Q 013274          100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK-VYRTAMSPLAASHMLIAAGTEDVQVRLCDIA  178 (446)
Q Consensus       100 ~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~  178 (446)
                      ..|+++|.++.+.- +|++.+||+.|++||+|+...+.+++++..+|+ +..++.+.   +...+++++.|..|.+||++
T Consensus        14 ~~~qgaV~avryN~-dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~---Dnskf~s~GgDk~v~vwDV~   89 (307)
T KOG0316|consen   14 DCAQGAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSS---DNSKFASCGGDKAVQVWDVN   89 (307)
T ss_pred             cccccceEEEEEcc-CCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccc---cccccccCCCCceEEEEEcc
Confidence            57889998877764 899999999999999999999999999987665 44444444   34578999999999999999


Q ss_pred             CCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCC
Q 013274          179 SGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQN  258 (446)
Q Consensus       179 ~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (446)
                      +|+..+.+.+|.+.|.+|.|+.+.. +++|||.|.+||+||-|....    +          |+                
T Consensus        90 TGkv~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~----e----------Pi----------------  138 (307)
T KOG0316|consen   90 TGKVDRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSF----E----------PI----------------  138 (307)
T ss_pred             cCeeeeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCC----C----------cc----------------
Confidence            9999999999999999999997765 789999999999999875321    0          00                


Q ss_pred             CCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEec
Q 013274          259 SSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDV  338 (446)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~  338 (446)
                                                                  +.+......|.++..+  +..+++||.||++|.||+
T Consensus       139 --------------------------------------------Qildea~D~V~Si~v~--~heIvaGS~DGtvRtydi  172 (307)
T KOG0316|consen  139 --------------------------------------------QILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDI  172 (307)
T ss_pred             --------------------------------------------chhhhhcCceeEEEec--ccEEEeeccCCcEEEEEe
Confidence                                                        0000112336666665  578999999999999999


Q ss_pred             CcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccce--EEEEEcCCCCEEEEee
Q 013274          339 ESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYV--NCCCFSSQDQELYTGG  415 (446)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v--~~~~fSpd~~~lvtgs  415 (446)
                      +.++.. ..+     -..+...+.+++++...+.++. +.+++.|-.+|+++..+.||.+.=  .+++|+.....+++||
T Consensus       173 R~G~l~-sDy-----~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgS  246 (307)
T KOG0316|consen  173 RKGTLS-SDY-----FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGS  246 (307)
T ss_pred             ecceee-hhh-----cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEecc
Confidence            987521 100     0224557889999988766655 688999999999999999998643  5778888889999999


Q ss_pred             CCCcEEEeCCCC
Q 013274          416 NDRQILVWCPSR  427 (446)
Q Consensus       416 ~D~~v~vW~~~~  427 (446)
                      +||.|.+|++..
T Consensus       247 EDG~Vy~wdLvd  258 (307)
T KOG0316|consen  247 EDGKVYFWDLVD  258 (307)
T ss_pred             CCceEEEEEecc
Confidence            999999999853

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.96  E-value=7.3e-28  Score=218.96  Aligned_cols=273  Identities=21%  Similarity=0.353  Sum_probs=203.5

Q ss_pred             CCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEE
Q 013274           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV  120 (446)
Q Consensus        41 ~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~  120 (446)
                      .|.|.|+.+++-|.+...++|++..+.|.|||..+.......  ....++-+     .+.||+.+=+++.|++.....|+
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~--~~~~~Pdl-----~L~gH~~eg~glsWn~~~~g~Ll  194 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA--SGECRPDL-----RLKGHEKEGYGLSWNRQQEGTLL  194 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc--cccCCCce-----EEEeecccccccccccccceeEe
Confidence            699999999998988889999999999999998654322110  00111111     22478877777899888888999


Q ss_pred             EEeCCCeEEEEECCCCee-------eEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCC--CCceeeeeeCCC
Q 013274          121 TGSYDHYVKVWDTNCTRV-------VMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA--SGAISQTLSGHR  190 (446)
Q Consensus       121 s~s~D~~i~iWd~~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~--~~~~~~~l~~h~  190 (446)
                      +++.|++|++||+.....       ...+. +...+..+++++...  .+|++.+.|+.+.|||++  +.++.....+|.
T Consensus       195 s~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~--~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~  272 (422)
T KOG0264|consen  195 SGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE--DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHS  272 (422)
T ss_pred             eccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccch--hhheeecCCCeEEEEEcCCCCCCCcccccccC
Confidence            999999999999875332       11222 334577888888643  589999999999999999  556677888999


Q ss_pred             CCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccc
Q 013274          191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRS  270 (446)
Q Consensus       191 ~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (446)
                      ++|.|++|+|.+.++|||||.|++|++||+|+...                                             
T Consensus       273 ~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~---------------------------------------------  307 (422)
T KOG0264|consen  273 AEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK---------------------------------------------  307 (422)
T ss_pred             CceeEEEeCCCCCceEEeccCCCcEEEeechhccc---------------------------------------------
Confidence            99999999999999999999999999999996321                                             


Q ss_pred             cCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCC-CEEEEeecCCcEEEEecCcCceeeeeee
Q 013274          271 ANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVESGRNTLVNFE  349 (446)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~sgs~D~~i~lWd~~~~~~~~~~~~  349 (446)
                                                    ..-...+|...|.+|-|||.. ..|+|++.|+++.+||+..-..... .+
T Consensus       308 ------------------------------~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~-~e  356 (422)
T KOG0264|consen  308 ------------------------------PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS-PE  356 (422)
T ss_pred             ------------------------------CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccC-hh
Confidence                                          000134788999999999975 6789999999999999975211000 00


Q ss_pred             EEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCE-EEEeeCCCcEEEeCCCCC
Q 013274          350 TVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQE-LYTGGNDRQILVWCPSRH  428 (446)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~-lvtgs~D~~v~vW~~~~~  428 (446)
                      .   ....+        +.++|                   .=.||+..|+++.|.|+..+ ++|.+.|+.+.||.+...
T Consensus       357 d---a~dgp--------pEllF-------------------~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~  406 (422)
T KOG0264|consen  357 D---AEDGP--------PELLF-------------------IHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN  406 (422)
T ss_pred             h---hccCC--------cceeE-------------------EecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence            0   00011        12222                   23589999999999999877 669999999999998744

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.96  E-value=5.3e-29  Score=223.04  Aligned_cols=247  Identities=23%  Similarity=0.383  Sum_probs=178.9

Q ss_pred             cceeEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccC-ccccEeEEEEe
Q 013274           34 NYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG-HKYAISSAIWY  112 (446)
Q Consensus        34 ~~~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-h~~~V~~~~~~  112 (446)
                      +++.++..|...|.+|.|++ ++.+++||+.||.|++|+.+-.-.                  +..++ |+.+|++++|+
T Consensus       129 nFEtilQaHDs~Vr~m~ws~-~g~wmiSgD~gG~iKyWqpnmnnV------------------k~~~ahh~eaIRdlafS  189 (464)
T KOG0284|consen  129 NFETILQAHDSPVRTMKWSH-NGTWMISGDKGGMIKYWQPNMNNV------------------KIIQAHHAEAIRDLAFS  189 (464)
T ss_pred             eHHHHhhhhcccceeEEEcc-CCCEEEEcCCCceEEecccchhhh------------------HHhhHhhhhhhheeccC
Confidence            34556778999999999985 689999999999999998753211                  01134 44889999999


Q ss_pred             ecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCc-eEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCC
Q 013274          113 PVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK-VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD  191 (446)
Q Consensus       113 ~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~  191 (446)
                      | +...|+|||+|++|+|||....+..+.+..++. +.++.++|.   .-+||+|+.|..|++||.+++.++.++.+|..
T Consensus       190 p-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~---kgLiasgskDnlVKlWDprSg~cl~tlh~HKn  265 (464)
T KOG0284|consen  190 P-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPT---KGLIASGSKDNLVKLWDPRSGSCLATLHGHKN  265 (464)
T ss_pred             C-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCc---cceeEEccCCceeEeecCCCcchhhhhhhccc
Confidence            8 455899999999999999987777666554332 567777774   45899999999999999999999999999999


Q ss_pred             CeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCC--CcccccceeeccccccCCCCCcCCCCcccc
Q 013274          192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRR--PPLLKRKVSISKSLSAGQNSSVKPRAPQKR  269 (446)
Q Consensus       192 ~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (446)
                      .|+++.|+|+++| |+|+|.|..++++|+|+-+.++.+..+...+-..  .|+...      .+                
T Consensus       266 tVl~~~f~~n~N~-Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~------lf----------------  322 (464)
T KOG0284|consen  266 TVLAVKFNPNGNW-LLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNES------LF----------------  322 (464)
T ss_pred             eEEEEEEcCCCCe-eEEccCCceEEEEehhHhHHHHHhhcchhhheeecccccccc------ce----------------
Confidence            9999999999976 7899999999999999766665554433221110  000000      00                


Q ss_pred             ccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEec
Q 013274          270 SANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDV  338 (446)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~  338 (446)
                       ..+           ...+++................+|.+.|.+|+++|-|..|+||+.|.++|+|.-
T Consensus       323 -tsg-----------g~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  323 -TSG-----------GSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR  379 (464)
T ss_pred             -eec-----------cCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence             000           000111110000000001123589999999999999999999999999999953

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=5e-26  Score=193.08  Aligned_cols=285  Identities=17%  Similarity=0.292  Sum_probs=214.9

Q ss_pred             eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (446)
Q Consensus        39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~  118 (446)
                      ..+|.+.|.+|+|+. +|..|++||.|+++++|+++.....               ......||.+.|-.++|.|...++
T Consensus        16 ~~~~~~~v~Sv~wn~-~g~~lasgs~dktv~v~n~e~~r~~---------------~~~~~~gh~~svdql~w~~~~~d~   79 (313)
T KOG1407|consen   16 LQGHVQKVHSVAWNC-DGTKLASGSFDKTVSVWNLERDRFR---------------KELVYRGHTDSVDQLCWDPKHPDL   79 (313)
T ss_pred             hhhhhhcceEEEEcc-cCceeeecccCCceEEEEecchhhh---------------hhhcccCCCcchhhheeCCCCCcc
Confidence            357899999999985 6889999999999999999865321               122346899999999999999999


Q ss_pred             EEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEE
Q 013274          119 FVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEW  198 (446)
Q Consensus       119 l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~  198 (446)
                      |++++.|++|++||+..+++.......+.-..+.++|.+   .+++.+..|..|...|.++.+.....+ ....+.-+.|
T Consensus        80 ~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g---~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w  155 (313)
T KOG1407|consen   80 FATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDG---EYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISW  155 (313)
T ss_pred             eEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCC---CEEEEecCcccEEEEEecccceeehhc-ccceeeeeee
Confidence            999999999999999999998888777666677888754   588999999999999998876654433 4456777888


Q ss_pred             ecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceee
Q 013274          199 STSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQ  278 (446)
Q Consensus       199 s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (446)
                      +.++..+++ ...-|+|.|-.....+.                                                     
T Consensus       156 ~~~nd~Ffl-t~GlG~v~ILsypsLkp-----------------------------------------------------  181 (313)
T KOG1407|consen  156 NNSNDLFFL-TNGLGCVEILSYPSLKP-----------------------------------------------------  181 (313)
T ss_pred             cCCCCEEEE-ecCCceEEEEecccccc-----------------------------------------------------
Confidence            866665444 44457777765432111                                                     


Q ss_pred             cccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCC
Q 013274          279 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKP  358 (446)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~  358 (446)
                                             .+...+|...-.|+.|+|+|+|+|+|+.|..+-+||+..--+.    .... ....+
T Consensus       182 -----------------------v~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~----R~is-Rldwp  233 (313)
T KOG1407|consen  182 -----------------------VQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICE----RCIS-RLDWP  233 (313)
T ss_pred             -----------------------ccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhh----eeec-cccCc
Confidence                                   1123578877889999999999999999999999999753221    1111 12233


Q ss_pred             e-EEEEcCCCcEEEEeCCC-ceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCC---------CcEEEeCCC
Q 013274          359 I-QLATTQDPAVVFVPCMT-AVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND---------RQILVWCPS  426 (446)
Q Consensus       359 ~-~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D---------~~v~vW~~~  426 (446)
                      + .+.|+.++.++++++.+ .+-+-++.+|..+..++ |+++.+.|+|+|...+||-+..|         ++||++-.+
T Consensus       234 VRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  234 VRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS  311 (313)
T ss_pred             eEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence            3 46788999999887654 34445557788777776 78899999999999999965554         567777544

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=3.3e-25  Score=193.44  Aligned_cols=292  Identities=18%  Similarity=0.274  Sum_probs=220.3

Q ss_pred             EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (446)
Q Consensus        38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~  117 (446)
                      ++..-.+.|++|.|+. +|.+|++++.|.+++|||..++....                 ...-++.+|..+.|-..+. 
T Consensus         9 ~f~~~~~~i~sl~fs~-~G~~litss~dDsl~LYd~~~g~~~~-----------------ti~skkyG~~~~~Fth~~~-   69 (311)
T KOG1446|consen    9 VFRETNGKINSLDFSD-DGLLLITSSEDDSLRLYDSLSGKQVK-----------------TINSKKYGVDLACFTHHSN-   69 (311)
T ss_pred             ccccCCCceeEEEecC-CCCEEEEecCCCeEEEEEcCCCceee-----------------EeecccccccEEEEecCCc-
Confidence            3445568899999985 68899999999999999998765321                 1124556666666654344 


Q ss_pred             EEEEEe--CCCeEEEEECCCCeeeEEEecC-CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeE
Q 013274          118 LFVTGS--YDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM  194 (446)
Q Consensus       118 ~l~s~s--~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~  194 (446)
                      .++-++  .|.+||+-++.+.+.++.|..+ ..+.++..+|..   ..+++++.|.+|++||++..++...+.-..-  .
T Consensus        70 ~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~---d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--p  144 (311)
T KOG1446|consen   70 TVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKD---DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--P  144 (311)
T ss_pred             eEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCC---CeEEecccCCeEEeeEecCCCCceEEecCCC--c
Confidence            344344  4999999999999999988744 347788888754   5799999999999999998888777654333  4


Q ss_pred             EEEEecCCCeEEEEeeCCCcEEEEEccCCc--eeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccC
Q 013274          195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAG--CFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSAN  272 (446)
Q Consensus       195 sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (446)
                      .++|+|.|- ++|.+...+.|+|||+|.-.  .+..+.                                          
T Consensus       145 i~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~------------------------------------------  181 (311)
T KOG1446|consen  145 IAAFDPEGL-IFALANGSELIKLYDLRSFDKGPFTTFS------------------------------------------  181 (311)
T ss_pred             ceeECCCCc-EEEEecCCCeEEEEEecccCCCCceeEc------------------------------------------
Confidence            567999885 67888777799999998531  111110                                          


Q ss_pred             CCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEE
Q 013274          273 GNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR  352 (446)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~  352 (446)
                                           +          ..+-....+.|.|||||++|+-+...+.+++.|.-+|.. ...+....
T Consensus       182 ---------------------i----------~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~-~~tfs~~~  229 (311)
T KOG1446|consen  182 ---------------------I----------TDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTV-KSTFSGYP  229 (311)
T ss_pred             ---------------------c----------CCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcE-eeeEeecc
Confidence                                 0          001123478899999999999999999999999998863 22333333


Q ss_pred             eecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecc-cccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCCC
Q 013274          353 LQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRG-HYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS  430 (446)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~g-H~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~~  430 (446)
                      .....+..+.++||+..++++.. +.+.+|++.++..+..+++ |.+++.|+.|+|--.++||++  ..+-+|-|+.+++
T Consensus       230 ~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~~~~~  307 (311)
T KOG1446|consen  230 NAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPDEDAL  307 (311)
T ss_pred             CCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEecccccc
Confidence            33334567889999999998876 6899999999999999999 899999999999998998874  5699999986654

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=5.8e-26  Score=198.10  Aligned_cols=252  Identities=19%  Similarity=0.296  Sum_probs=193.5

Q ss_pred             cccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCc-eEEeeeccCCCCceEEEEee--CCCcEEEEeCCC
Q 013274          103 KYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK-VYRTAMSPLAASHMLIAAGT--EDVQVRLCDIAS  179 (446)
Q Consensus       103 ~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lasgs--~d~~v~vwd~~~  179 (446)
                      ...|.++.+++ +|..+++++.|.++++||..+++.++++..... +..+.|....  . .+..++  .|.+|+.-++.+
T Consensus        14 ~~~i~sl~fs~-~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~--~-~~i~sStk~d~tIryLsl~d   89 (311)
T KOG1446|consen   14 NGKINSLDFSD-DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHS--N-TVIHSSTKEDDTIRYLSLHD   89 (311)
T ss_pred             CCceeEEEecC-CCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCC--c-eEEEccCCCCCceEEEEeec
Confidence            34577877776 899999999999999999999999888765422 2334444322  2 333334  488999999999


Q ss_pred             CceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCC
Q 013274          180 GAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNS  259 (446)
Q Consensus       180 ~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (446)
                      +++++.+.||.+.|.++..+|-+. .++|+|.|++||+||+|..+|...+..                            
T Consensus        90 NkylRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~l~~----------------------------  140 (311)
T KOG1446|consen   90 NKYLRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQGLLNL----------------------------  140 (311)
T ss_pred             CceEEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCCCceEEec----------------------------
Confidence            999999999999999999999886 588999999999999997666443310                            


Q ss_pred             CcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecC
Q 013274          260 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVE  339 (446)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~  339 (446)
                                                                        ..-...+|+|.|-++|++...+.|++||++
T Consensus       141 --------------------------------------------------~~~pi~AfDp~GLifA~~~~~~~IkLyD~R  170 (311)
T KOG1446|consen  141 --------------------------------------------------SGRPIAAFDPEGLIFALANGSELIKLYDLR  170 (311)
T ss_pred             --------------------------------------------------CCCcceeECCCCcEEEEecCCCeEEEEEec
Confidence                                                              012335799999999999888899999998


Q ss_pred             cC-ceeeeeeeEEEee---cCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccce---EEEEEcCCCCEE
Q 013274          340 SG-RNTLVNFETVRLQ---TSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYV---NCCCFSSQDQEL  411 (446)
Q Consensus       340 ~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v---~~~~fSpd~~~l  411 (446)
                      +- +-.   +......   ......+.+++++..+++... +.+.+.|..+|..+.++.+|.+.-   ....|+||++++
T Consensus       171 s~dkgP---F~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fv  247 (311)
T KOG1446|consen  171 SFDKGP---FTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFV  247 (311)
T ss_pred             ccCCCC---ceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEE
Confidence            73 222   2222222   234567889999988777654 578999999999999999987654   688999999999


Q ss_pred             EEeeCCCcEEEeCCCCCCCCCcCCCc-cCc
Q 013274          412 YTGGNDRQILVWCPSRHISDGVDAGP-MQD  440 (446)
Q Consensus       412 vtgs~D~~v~vW~~~~~~~~~~~~~~-~~~  440 (446)
                      .+|+.|++|.+|+++++..-....|+ +..
T Consensus       248 l~gs~dg~i~vw~~~tg~~v~~~~~~~~~~  277 (311)
T KOG1446|consen  248 LSGSDDGTIHVWNLETGKKVAVLRGPNGGP  277 (311)
T ss_pred             EEecCCCcEEEEEcCCCcEeeEecCCCCCC
Confidence            99999999999999877644455553 443

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=1.4e-25  Score=220.36  Aligned_cols=173  Identities=17%  Similarity=0.333  Sum_probs=137.0

Q ss_pred             EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (446)
Q Consensus        38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~  117 (446)
                      ++.+|++.|++++|+|.++++|+|||.|++|++||+.++.....     ...++     ....+|...|.++.|+|....
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~-----~~~~l-----~~L~gH~~~V~~l~f~P~~~~  139 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN-----ISDPI-----VHLQGHTKKVGIVSFHPSAMN  139 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccc-----cCcce-----EEecCCCCcEEEEEeCcCCCC
Confidence            46789999999999985678999999999999999975421100     00111     123589999999999986667


Q ss_pred             EEEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCe-EE
Q 013274          118 LFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI-MT  195 (446)
Q Consensus       118 ~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v-~s  195 (446)
                      +|+||+.|++|+|||+.+++.+..+. +...+.++++++.   ..+|++++.|+.|++||+++++.+..+.+|.+.+ ..
T Consensus       140 iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spd---G~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~  216 (493)
T PTZ00421        140 VLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLD---GSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQR  216 (493)
T ss_pred             EEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECC---CCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceE
Confidence            99999999999999999988877765 4456888888874   4589999999999999999999999999998754 46


Q ss_pred             EEEecCCCeEEEEe---eCCCcEEEEEccCC
Q 013274          196 VEWSTSSEWILVTG---GCDGAIRFWDIRRA  223 (446)
Q Consensus       196 v~~s~~~~~~l~S~---s~Dg~I~iWd~~~~  223 (446)
                      +.|.+++..++.+|   +.|++|++||+++.
T Consensus       217 ~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~  247 (493)
T PTZ00421        217 CLWAKRKDLIITLGCSKSQQRQIMLWDTRKM  247 (493)
T ss_pred             EEEcCCCCeEEEEecCCCCCCeEEEEeCCCC
Confidence            77888877544333   35899999999853

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=1.2e-26  Score=228.16  Aligned_cols=272  Identities=24%  Similarity=0.362  Sum_probs=200.0

Q ss_pred             eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (446)
Q Consensus        39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~  118 (446)
                      +.+|++.|++++|.. ++.+|+|||.|.++++||+.++.+.                 ..+.||...|.++...   ...
T Consensus       245 l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C~-----------------~~l~gh~stv~~~~~~---~~~  303 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGECT-----------------HSLQGHTSSVRCLTID---PFL  303 (537)
T ss_pred             ccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCCCcEE-----------------EEecCCCceEEEEEcc---Cce
Confidence            568999999999964 6789999999999999999888752                 1235899999887654   457


Q ss_pred             EEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEE
Q 013274          119 FVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVE  197 (446)
Q Consensus       119 l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~  197 (446)
                      +++||.|.+|++|++.++.++..+. +.+.++++.+.     ..++++|+.|+.|++||+.++++++.+.||...|.++.
T Consensus       304 ~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~  378 (537)
T KOG0274|consen  304 LVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLI  378 (537)
T ss_pred             EeeccCCceEEEEeccCcceEEEeccccccEEEEEec-----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEE
Confidence            8899999999999999999998888 77778877766     35899999999999999999999999999999999998


Q ss_pred             EecCCCeEEEEeeCCCcEEEEEccCC-ceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCce
Q 013274          198 WSTSSEWILVTGGCDGAIRFWDIRRA-GCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGV  276 (446)
Q Consensus       198 ~s~~~~~~l~S~s~Dg~I~iWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (446)
                      +.+. + .+++|+.|++|++||+++. +|...+                                               
T Consensus       379 ~~~~-~-~~~Sgs~D~~IkvWdl~~~~~c~~tl-----------------------------------------------  409 (537)
T KOG0274|consen  379 VDSE-N-RLLSGSLDTTIKVWDLRTKRKCIHTL-----------------------------------------------  409 (537)
T ss_pred             ecCc-c-eEEeeeeccceEeecCCchhhhhhhh-----------------------------------------------
Confidence            8654 3 4789999999999999876 443222                                               


Q ss_pred             eecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecC
Q 013274          277 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTS  356 (446)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~  356 (446)
                                                   .+|.+-+..+  ...+++|++++.|++|++||..++...... +..  +..
T Consensus       410 -----------------------------~~h~~~v~~l--~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~-~~~--~~~  455 (537)
T KOG0274|consen  410 -----------------------------QGHTSLVSSL--LLRDNFLVSSSADGTIKLWDAEEGECLRTL-EGR--HVG  455 (537)
T ss_pred             -----------------------------cCCccccccc--ccccceeEeccccccEEEeecccCceeeee-ccC--Ccc
Confidence                                         2344444333  345789999999999999999987643221 110  112


Q ss_pred             CCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccc-cceEEEEEcCCCCEEEEeeCCCcEEEe
Q 013274          357 KPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHY-EYVNCCCFSSQDQELYTGGNDRQILVW  423 (446)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~-~~v~~~~fSpd~~~lvtgs~D~~v~vW  423 (446)
                      ....++.. +..++.......+++||+.+++..+.+-.+. .....+++.   ....++........|
T Consensus       456 ~v~~l~~~-~~~il~s~~~~~~~l~dl~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  519 (537)
T KOG0274|consen  456 GVSALALG-KEEILCSSDDGSVKLWDLRSGTLIRTLLSTDLGATWGVAPS---SPSFSTANVEAVQSW  519 (537)
T ss_pred             cEEEeecC-cceEEEEecCCeeEEEecccCchhhhhhhcccccccccccC---CCccccccccccccc
Confidence            22222222 3444555556789999999999887774444 333444332   223344444444444

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.95  E-value=1.9e-26  Score=199.31  Aligned_cols=243  Identities=20%  Similarity=0.354  Sum_probs=192.6

Q ss_pred             ccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEe---cCCceEEeeeccCCCCceEEEEeeCCCcEEEE
Q 013274           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK---MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLC  175 (446)
Q Consensus        99 ~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vw  175 (446)
                      ..||+++|+.+.|.| ++..|||||.|..|.+|++.. .+.....   +.+.+..+.+..+   ...+++++.|..|+.|
T Consensus        43 l~gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~g-dceN~~~lkgHsgAVM~l~~~~d---~s~i~S~gtDk~v~~w  117 (338)
T KOG0265|consen   43 LPGHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYG-DCENFWVLKGHSGAVMELHGMRD---GSHILSCGTDKTVRGW  117 (338)
T ss_pred             cCCCcceEEEEEECC-CCCeEeecCCcceEEEEeccc-cccceeeeccccceeEeeeeccC---CCEEEEecCCceEEEE
Confidence            369999999999998 899999999999999999742 2222222   3445666666654   4578999999999999


Q ss_pred             eCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeecccccc
Q 013274          176 DIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSA  255 (446)
Q Consensus       176 d~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (446)
                      |+++|+.++.+++|..-|.++.-+.-+..++.|++.|+++|+||+|+..+.+.++                         
T Consensus       118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-------------------------  172 (338)
T KOG0265|consen  118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-------------------------  172 (338)
T ss_pred             ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-------------------------
Confidence            9999999999999999999998666666678899999999999999765433221                         


Q ss_pred             CCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEE
Q 013274          256 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRL  335 (446)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~l  335 (446)
                                                                          ..-.++++.|...+..+++|+-|+.|++
T Consensus       173 ----------------------------------------------------~kyqltAv~f~d~s~qv~sggIdn~ikv  200 (338)
T KOG0265|consen  173 ----------------------------------------------------NKYQLTAVGFKDTSDQVISGGIDNDIKV  200 (338)
T ss_pred             ----------------------------------------------------cceeEEEEEecccccceeeccccCceee
Confidence                                                                0123789999999999999999999999


Q ss_pred             EecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEe-CCCceEEEEeec----CceEEEecccc----cceEEEEEcC
Q 013274          336 WDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVP-CMTAVKAFDIWS----GKTCLTFRGHY----EYVNCCCFSS  406 (446)
Q Consensus       336 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~----~~~~~~l~gH~----~~v~~~~fSp  406 (446)
                      ||+......    ..+.-+......+..++++..+.+. ....+++||+..    ..++..+.||.    .....++|||
T Consensus       201 Wd~r~~d~~----~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp  276 (338)
T KOG0265|consen  201 WDLRKNDGL----YTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP  276 (338)
T ss_pred             eccccCcce----EEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC
Confidence            999765432    2333445566778888888887775 446899999854    24577888874    4567899999


Q ss_pred             CCCEEEEeeCCCcEEEeCCCC
Q 013274          407 QDQELYTGGNDRQILVWCPSR  427 (446)
Q Consensus       407 d~~~lvtgs~D~~v~vW~~~~  427 (446)
                      +++.+..||.|+.+.+|+...
T Consensus       277 ~~~~i~ags~dr~vyvwd~~~  297 (338)
T KOG0265|consen  277 NGTKITAGSADRFVYVWDTTS  297 (338)
T ss_pred             CCCccccccccceEEEeeccc
Confidence            999999999999999998864

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=7.8e-26  Score=192.91  Aligned_cols=209  Identities=23%  Similarity=0.361  Sum_probs=162.4

Q ss_pred             ccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCee---eEEEe--cCCceEEeeeccCCCCceEEEEeeCCCc
Q 013274           97 QHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRV---VMNFK--MPGKVYRTAMSPLAASHMLIAAGTEDVQ  171 (446)
Q Consensus        97 ~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~lasgs~d~~  171 (446)
                      +...||++.+..++++|..|..|||||.|+.||+|++..+.-   ...+.  +...+.+++++|.+   .+||+||.|.+
T Consensus         8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g---~~La~aSFD~t   84 (312)
T KOG0645|consen    8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHG---RYLASASFDAT   84 (312)
T ss_pred             EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCC---cEEEEeeccce
Confidence            345699999999999996577999999999999999985322   21111  33457888998864   49999999999


Q ss_pred             EEEEeCCCC--ceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceee
Q 013274          172 VRLCDIASG--AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSI  249 (446)
Q Consensus       172 v~vwd~~~~--~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (446)
                      +-||.-..+  +++..|+||..+|.+|+|+++|.+ |||++.|+.|-||-+.....+..+                    
T Consensus        85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~-LATCSRDKSVWiWe~deddEfec~--------------------  143 (312)
T KOG0645|consen   85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNY-LATCSRDKSVWIWEIDEDDEFECI--------------------  143 (312)
T ss_pred             EEEeecCCCceeEEeeeeccccceeEEEEcCCCCE-EEEeeCCCeEEEEEecCCCcEEEE--------------------
Confidence            999987665  578899999999999999999985 899999999999987643322111                    


Q ss_pred             ccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeec
Q 013274          250 SKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS  329 (446)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~  329 (446)
                                                                           ..+..|...|..+.|+|...+|+|+|.
T Consensus       144 -----------------------------------------------------aVL~~HtqDVK~V~WHPt~dlL~S~SY  170 (312)
T KOG0645|consen  144 -----------------------------------------------------AVLQEHTQDVKHVIWHPTEDLLFSCSY  170 (312)
T ss_pred             -----------------------------------------------------eeeccccccccEEEEcCCcceeEEecc
Confidence                                                                 012467777999999999999999999


Q ss_pred             CCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCC
Q 013274          330 DSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQ  409 (446)
Q Consensus       330 D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~  409 (446)
                      |.+||+|.-.-+.                                          +..+..+|.+|++.|++++|.|.|.
T Consensus       171 DnTIk~~~~~~dd------------------------------------------dW~c~~tl~g~~~TVW~~~F~~~G~  208 (312)
T KOG0645|consen  171 DNTIKVYRDEDDD------------------------------------------DWECVQTLDGHENTVWSLAFDNIGS  208 (312)
T ss_pred             CCeEEEEeecCCC------------------------------------------CeeEEEEecCccceEEEEEecCCCc
Confidence            9999999744210                                          1234456677777778888887777


Q ss_pred             EEEEeeCCCcEEEeC
Q 013274          410 ELYTGGNDRQILVWC  424 (446)
Q Consensus       410 ~lvtgs~D~~v~vW~  424 (446)
                      .|++|+.|++|+||.
T Consensus       209 rl~s~sdD~tv~Iw~  223 (312)
T KOG0645|consen  209 RLVSCSDDGTVSIWR  223 (312)
T ss_pred             eEEEecCCcceEeee
Confidence            778888888888886

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=1.2e-25  Score=220.76  Aligned_cols=261  Identities=18%  Similarity=0.211  Sum_probs=181.9

Q ss_pred             CccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEE
Q 013274           42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT  121 (446)
Q Consensus        42 H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s  121 (446)
                      |-..|+...+++ ++..+++++.+..+..|+...+..........+...    ......||.+.|.++.|+|.++.+|+|
T Consensus        19 ~~~~i~~~~~~~-d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~----~~~~l~GH~~~V~~v~fsP~d~~~LaS   93 (493)
T PTZ00421         19 HFLNVTPSTALW-DCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLAS----NPPILLGQEGPIIDVAFNPFDPQKLFT   93 (493)
T ss_pred             ceeccccccccC-CCCCcEeECCceEEEEEecCCceEEeeccccccCCC----CCceEeCCCCCEEEEEEcCCCCCEEEE
Confidence            445566555654 445678999999999998654321100000000000    001235899999999999877889999


Q ss_pred             EeCCCeEEEEECCCCe-------eeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCe
Q 013274          122 GSYDHYVKVWDTNCTR-------VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI  193 (446)
Q Consensus       122 ~s~D~~i~iWd~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v  193 (446)
                      ||.|++|++||+.++.       ++..+. +...+..+.|+|..  ..+|++|+.|+.|++||++++.....+.+|.+.|
T Consensus        94 gS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~--~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V  171 (493)
T PTZ00421         94 ASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA--MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQI  171 (493)
T ss_pred             EeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC--CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCce
Confidence            9999999999997642       233333 34457788888753  2489999999999999999999999999999999


Q ss_pred             EEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCC
Q 013274          194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANG  273 (446)
Q Consensus       194 ~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (446)
                      .+++|+|++. +|++++.|++|++||++++..+..+                                            
T Consensus       172 ~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~v~tl--------------------------------------------  206 (493)
T PTZ00421        172 TSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTIVSSV--------------------------------------------  206 (493)
T ss_pred             EEEEEECCCC-EEEEecCCCEEEEEECCCCcEEEEE--------------------------------------------
Confidence            9999999987 4799999999999999976543322                                            


Q ss_pred             CceeecccceeecCCccccccCCCcccccccccccccC-eEEEEEccCCCEEEEee----cCCcEEEEecCcCceeeeee
Q 013274          274 NGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGA-VTGLKVTEDGMYLLSAG----SDSRIRLWDVESGRNTLVNF  348 (446)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~fs~dg~~l~sgs----~D~~i~lWd~~~~~~~~~~~  348 (446)
                                                      .+|.+. +..+.|.+++..+++++    .|++|++||+.+......  
T Consensus       207 --------------------------------~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~--  252 (493)
T PTZ00421        207 --------------------------------EAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYS--  252 (493)
T ss_pred             --------------------------------ecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCcee--
Confidence                                            123222 34566888877777654    479999999875421110  


Q ss_pred             eEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEee-CCCcEEEeCCCC
Q 013274          349 ETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGG-NDRQILVWCPSR  427 (446)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs-~D~~v~vW~~~~  427 (446)
                       ...                                        ..+...+....|+||+++|++|+ .|++|++|++..
T Consensus       253 -~~~----------------------------------------~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~  291 (493)
T PTZ00421        253 -TVD----------------------------------------LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN  291 (493)
T ss_pred             -Eec----------------------------------------cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence             000                                        01223355667889999988877 499999998876


Q ss_pred             CC
Q 013274          428 HI  429 (446)
Q Consensus       428 ~~  429 (446)
                      ..
T Consensus       292 ~~  293 (493)
T PTZ00421        292 ER  293 (493)
T ss_pred             Cc
Confidence            54

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=4.9e-26  Score=213.94  Aligned_cols=202  Identities=21%  Similarity=0.361  Sum_probs=167.5

Q ss_pred             ccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEE
Q 013274           43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG  122 (446)
Q Consensus        43 ~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~  122 (446)
                      .-+|.+..|-. .-+.+++||.|..|+|||.++.++.                 ..++.|..-|.+++.+|. ..+++|+
T Consensus        55 ~~PvRa~kfia-RknWiv~GsDD~~IrVfnynt~ekV-----------------~~FeAH~DyIR~iavHPt-~P~vLts  115 (794)
T KOG0276|consen   55 EVPVRAAKFIA-RKNWIVTGSDDMQIRVFNYNTGEKV-----------------KTFEAHSDYIRSIAVHPT-LPYVLTS  115 (794)
T ss_pred             ccchhhheeee-ccceEEEecCCceEEEEecccceee-----------------EEeeccccceeeeeecCC-CCeEEec
Confidence            35677777765 4578999999999999999887542                 234689999999999984 5599999


Q ss_pred             eCCCeEEEEECCCC-eeeEEEecCCc-eEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEec
Q 013274          123 SYDHYVKVWDTNCT-RVVMNFKMPGK-VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWST  200 (446)
Q Consensus       123 s~D~~i~iWd~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~  200 (446)
                      |+|-+|++||-+.. .+..+|..+.+ +.++++.|-++  ..+|++|.|++|+||.+....+..+|.||...|.+|.|-+
T Consensus       116 SDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~--ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~  193 (794)
T KOG0276|consen  116 SDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDP--NTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYT  193 (794)
T ss_pred             CCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCc--cceeeeeccccEEEEEcCCCCCceeeeccccCcceEEecc
Confidence            99999999998653 45556654433 67888888654  5799999999999999999999999999999999999977


Q ss_pred             CC-CeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeec
Q 013274          201 SS-EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQS  279 (446)
Q Consensus       201 ~~-~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (446)
                      .+ +-+|+||+.|.+|++||.++..|++++                                                  
T Consensus       194 ~gdkpylIsgaDD~tiKvWDyQtk~CV~TL--------------------------------------------------  223 (794)
T KOG0276|consen  194 GGDKPYLISGADDLTIKVWDYQTKSCVQTL--------------------------------------------------  223 (794)
T ss_pred             CCCcceEEecCCCceEEEeecchHHHHHHh--------------------------------------------------
Confidence            54 224799999999999999887765443                                                  


Q ss_pred             ccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcC
Q 013274          280 SVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG  341 (446)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~  341 (446)
                                                .||...|+++.|+|.=..++|||.||++|||.-.+-
T Consensus       224 --------------------------eGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty  259 (794)
T KOG0276|consen  224 --------------------------EGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY  259 (794)
T ss_pred             --------------------------hcccccceEEEecCCCcEEEEecCCccEEEecCcce
Confidence                                      467888999999999999999999999999987763

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.95  E-value=9.7e-28  Score=219.42  Aligned_cols=251  Identities=20%  Similarity=0.323  Sum_probs=188.8

Q ss_pred             cccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCC-CeeeEEEecCC-ceEEeeeccCCCCceEEEEeeCCCcEEEE
Q 013274           98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNC-TRVVMNFKMPG-KVYRTAMSPLAASHMLIAAGTEDVQVRLC  175 (446)
Q Consensus        98 ~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~lasgs~d~~v~vw  175 (446)
                      ...||...|+++.|+|..+.+|+|+|.|+.|+||++-. +.++++|..+. .+..+.++..   ...+++++.|+.+++|
T Consensus       209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~---g~~fLS~sfD~~lKlw  285 (503)
T KOG0282|consen  209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNC---GTSFLSASFDRFLKLW  285 (503)
T ss_pred             eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhcccc---CCeeeeeecceeeeee
Confidence            34799999999999998999999999999999999865 78888887433 3455555553   4578999999999999


Q ss_pred             eCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeecccccc
Q 013274          176 DIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSA  255 (446)
Q Consensus       176 d~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (446)
                      |+++|.++..+.. ...+.+|.|.|+++++|++|+.|+.|+.||+|+++.++.+                          
T Consensus       286 DtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY--------------------------  338 (503)
T KOG0282|consen  286 DTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEY--------------------------  338 (503)
T ss_pred             ccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHH--------------------------
Confidence            9999999888853 3567899999999888999999999999999987532211                          


Q ss_pred             CCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEE
Q 013274          256 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRL  335 (446)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~l  335 (446)
                                                                        -.|-+.|..+.|-++|++++|.+.|++++|
T Consensus       339 --------------------------------------------------d~hLg~i~~i~F~~~g~rFissSDdks~ri  368 (503)
T KOG0282|consen  339 --------------------------------------------------DRHLGAILDITFVDEGRRFISSSDDKSVRI  368 (503)
T ss_pred             --------------------------------------------------HhhhhheeeeEEccCCceEeeeccCccEEE
Confidence                                                              235677999999999999999999999999


Q ss_pred             EecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEe-CCCceEEEEeecC---ceEEEecccc--cceEEEEEcCCCC
Q 013274          336 WDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVP-CMTAVKAFDIWSG---KTCLTFRGHY--EYVNCCCFSSQDQ  409 (446)
Q Consensus       336 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~---~~~~~l~gH~--~~v~~~~fSpd~~  409 (446)
                      |+...+-.......   ..+-....+...|.+..++.- .++.+.++.+...   ...+.|.||.  +.-..|.|||||+
T Consensus       369 We~~~~v~ik~i~~---~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~  445 (503)
T KOG0282|consen  369 WENRIPVPIKNIAD---PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGR  445 (503)
T ss_pred             EEcCCCccchhhcc---hhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCC
Confidence            99886532110000   001111224444554444332 3345666654322   2345788995  5567899999999


Q ss_pred             EEEEeeCCCcEEEeCCCCCCCC
Q 013274          410 ELYTGGNDRQILVWCPSRHISD  431 (446)
Q Consensus       410 ~lvtgs~D~~v~vW~~~~~~~~  431 (446)
                      +|+||+.||.+.+|+..+.++-
T Consensus       446 ~l~SGdsdG~v~~wdwkt~kl~  467 (503)
T KOG0282|consen  446 TLCSGDSDGKVNFWDWKTTKLV  467 (503)
T ss_pred             eEEeecCCccEEEeechhhhhh
Confidence            9999999999999999877543

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=3.9e-27  Score=211.45  Aligned_cols=286  Identities=19%  Similarity=0.319  Sum_probs=215.8

Q ss_pred             EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (446)
Q Consensus        38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~  117 (446)
                      ++..|.+.|+.+.|-+ +...|++|+.|..|++||+.... .+.              ..++.|-.+.|+++.+-+ ++.
T Consensus       170 ~ld~h~gev~~v~~l~-~sdtlatgg~Dr~Ik~W~v~~~k-~~~--------------~~tLaGs~g~it~~d~d~-~~~  232 (459)
T KOG0288|consen  170 VLDAHEGEVHDVEFLR-NSDTLATGGSDRIIKLWNVLGEK-SEL--------------ISTLAGSLGNITSIDFDS-DNK  232 (459)
T ss_pred             hhhccccccceeEEcc-Ccchhhhcchhhhhhhhhcccch-hhh--------------hhhhhccCCCcceeeecC-CCc
Confidence            4557999999999964 55679999999999999986433 110              123345667788877765 678


Q ss_pred             EEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEE
Q 013274          118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVE  197 (446)
Q Consensus       118 ~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~  197 (446)
                      .+++++.|+.+++|++...+...++..  |...+....+..++..+++|+.|.+|++||+..+.+.+++- ....+..|.
T Consensus       233 ~~iAas~d~~~r~Wnvd~~r~~~TLsG--HtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~  309 (459)
T KOG0288|consen  233 HVIAASNDKNLRLWNVDSLRLRHTLSG--HTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIV  309 (459)
T ss_pred             eEEeecCCCceeeeeccchhhhhhhcc--cccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceE
Confidence            999999999999999998887766653  33333333333344558999999999999999987776543 224455566


Q ss_pred             EecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCcee
Q 013274          198 WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVR  277 (446)
Q Consensus       198 ~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (446)
                      .++   ..++||..|++||+||+|...+.+...                                               
T Consensus       310 ~~~---~~~~SgH~DkkvRfwD~Rs~~~~~sv~-----------------------------------------------  339 (459)
T KOG0288|consen  310 CSI---SDVISGHFDKKVRFWDIRSADKTRSVP-----------------------------------------------  339 (459)
T ss_pred             ecc---eeeeecccccceEEEeccCCceeeEee-----------------------------------------------
Confidence            542   257899999999999999765543321                                               


Q ss_pred             ecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEee-cC
Q 013274          278 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQ-TS  356 (446)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~-~~  356 (446)
                                                   . .+.|++|..+++|..|.+.+.|.++++.|+.+.. ..+.+....+. ..
T Consensus       340 -----------------------------~-gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~e-I~~~~sA~g~k~as  388 (459)
T KOG0288|consen  340 -----------------------------L-GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKE-IRQTFSAEGFKCAS  388 (459)
T ss_pred             -----------------------------c-CcceeeEeeccCCeEEeeecCCCceeeeeccccc-EEEEeecccccccc
Confidence                                         1 2469999999999999999999999999998753 22223222111 22


Q ss_pred             CCeEEEEcCCCcEEEEeC-CCceEEEEeecCceEEEecccccc--eEEEEEcCCCCEEEEeeCCCcEEEeC
Q 013274          357 KPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEY--VNCCCFSSQDQELYTGGNDRQILVWC  424 (446)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~l~gH~~~--v~~~~fSpd~~~lvtgs~D~~v~vW~  424 (446)
                      -...+.|+|++.+++.++ .+.+.+|++.++++...+......  |++++|+|-|..|++++.++.+.+|.
T Consensus       389 DwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  389 DWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             ccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            356789999999988864 578999999999998888766655  99999999999999999999999994

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=8.1e-26  Score=196.81  Aligned_cols=305  Identities=17%  Similarity=0.265  Sum_probs=211.7

Q ss_pred             EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (446)
Q Consensus        38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~  117 (446)
                      ++++|.+.|++|+|+. +|++|+|++.|++|+||++.+=+.   .    -|+.+.   .....+|.   +.+.|.|.-..
T Consensus        81 ~LKgH~~~vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~---~----eHr~~R---~nve~dhp---T~V~FapDc~s  146 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSS-DGKKLATISGDRSIRLWDVRDFEN---K----EHRCIR---QNVEYDHP---TRVVFAPDCKS  146 (420)
T ss_pred             hhhccCCceeeeEEcC-CCceeEEEeCCceEEEEecchhhh---h----hhhHhh---ccccCCCc---eEEEECCCcce
Confidence            4689999999999985 799999999999999999875221   1    122211   11123454   34567775556


Q ss_pred             EEEEEeCCCeEEEEECCC---CeeeEEEe------cC--CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeee
Q 013274          118 LFVTGSYDHYVKVWDTNC---TRVVMNFK------MP--GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL  186 (446)
Q Consensus       118 ~l~s~s~D~~i~iWd~~~---~~~~~~~~------~~--~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l  186 (446)
                      .++++-.-.++++|-+..   |..-..+.      .+  ..+.-+. .....+..+|++++.|..|.+|+++ |..+..+
T Consensus       147 ~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~-iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~i  224 (420)
T KOG2096|consen  147 VVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIIN-IGIAGNAKYIMSASLDTKICLWDLK-GQLLQSI  224 (420)
T ss_pred             EEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEE-EeecCCceEEEEecCCCcEEEEecC-Cceeeee
Confidence            677777778899997642   21111111      00  0111111 1122356789999999999999999 7777777


Q ss_pred             eCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCc
Q 013274          187 SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAP  266 (446)
Q Consensus       187 ~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (446)
                      ...+..-...+.||+|+. +++++.--.|++|.+--++     +                                    
T Consensus       225 dtnq~~n~~aavSP~GRF-ia~~gFTpDVkVwE~~f~k-----d------------------------------------  262 (420)
T KOG2096|consen  225 DTNQSSNYDAAVSPDGRF-IAVSGFTPDVKVWEPIFTK-----D------------------------------------  262 (420)
T ss_pred             ccccccccceeeCCCCcE-EEEecCCCCceEEEEEecc-----C------------------------------------
Confidence            666666667788999985 6888888899999752110     0                                    


Q ss_pred             cccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcC----c
Q 013274          267 QKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG----R  342 (446)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~----~  342 (446)
                                           |..+      .......+.||...|..++|+++...++|.|.||++|+||+.-.    +
T Consensus       263 ---------------------G~fq------ev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~q  315 (420)
T KOG2096|consen  263 ---------------------GTFQ------EVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQ  315 (420)
T ss_pred             ---------------------cchh------hhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCC
Confidence                                 0000      00111235799999999999999999999999999999997631    1


Q ss_pred             e--eeeee-eEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEe-cccccceEEEEEcCCCCEEEEeeCCC
Q 013274          343 N--TLVNF-ETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTF-RGHYEYVNCCCFSSQDQELYTGGNDR  418 (446)
Q Consensus       343 ~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l-~gH~~~v~~~~fSpd~~~lvtgs~D~  418 (446)
                      .  .+... ..+....+.+.++..+|++..++++..+.++++...+++...++ ..|...|.|++|+|||++++||+ |+
T Consensus       316 Dpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr  394 (420)
T KOG2096|consen  316 DPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DR  394 (420)
T ss_pred             CchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ce
Confidence            0  00000 11111234678899999999999999999999999998877766 46999999999999999999998 68


Q ss_pred             cEEEeC-CCCC
Q 013274          419 QILVWC-PSRH  428 (446)
Q Consensus       419 ~v~vW~-~~~~  428 (446)
                      -++|.. .++.
T Consensus       395 ~vrv~~ntpg~  405 (420)
T KOG2096|consen  395 YVRVIRNTPGW  405 (420)
T ss_pred             eeeeecCCCch
Confidence            888884 4433

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2e-26  Score=200.47  Aligned_cols=292  Identities=20%  Similarity=0.371  Sum_probs=219.7

Q ss_pred             eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (446)
Q Consensus        39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~  118 (446)
                      +.||...|+.++... .-..+.|+|.|.+.+||-++++.+..                 ...||.+.|.++.|++ .+.+
T Consensus       144 ~~GHkDGiW~Vaa~~-tqpi~gtASADhTA~iWs~Esg~CL~-----------------~Y~GH~GSVNsikfh~-s~~L  204 (481)
T KOG0300|consen  144 LEGHKDGIWHVAADS-TQPICGTASADHTARIWSLESGACLA-----------------TYTGHTGSVNSIKFHN-SGLL  204 (481)
T ss_pred             hcccccceeeehhhc-CCcceeecccccceeEEeecccccee-----------------eecccccceeeEEecc-ccce
Confidence            458999999999864 34589999999999999999887531                 1259999999999997 6889


Q ss_pred             EEEEeCCCeEEEEECC----CCe-----------e---------------------eE--EEecCCceEEeeeccCCCCc
Q 013274          119 FVTGSYDHYVKVWDTN----CTR-----------V---------------------VM--NFKMPGKVYRTAMSPLAASH  160 (446)
Q Consensus       119 l~s~s~D~~i~iWd~~----~~~-----------~---------------------~~--~~~~~~~~~~~~~~~~~~~~  160 (446)
                      ++|+|.|++..||...    ..+           .                     ++  ...+.++..-+..+..-.+.
T Consensus       205 ~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg  284 (481)
T KOG0300|consen  205 LLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG  284 (481)
T ss_pred             EEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc
Confidence            9999999999999621    000           0                     00  00011111111112222344


Q ss_pred             eEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCC
Q 013274          161 MLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRP  240 (446)
Q Consensus       161 ~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~  240 (446)
                      ..+++++.|.+..+||++++.++..|.||..+.+.++-.|..+ +++++|.|.+.|+||+|..  +..            
T Consensus       285 ~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQr-LVvTsSrDtTFRLWDFRea--I~s------------  349 (481)
T KOG0300|consen  285 QQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQR-LVVTSSRDTTFRLWDFREA--IQS------------  349 (481)
T ss_pred             ceeeeeeccccceeeeeccCceeccccCcchhccccccCCcce-EEEEeccCceeEeccchhh--cce------------
Confidence            5688999999999999999999999999999999999998865 5789999999999998731  000            


Q ss_pred             cccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccC
Q 013274          241 PLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED  320 (446)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~d  320 (446)
                                                                                   ...+.||...|+++.|..|
T Consensus       350 -------------------------------------------------------------V~VFQGHtdtVTS~vF~~d  368 (481)
T KOG0300|consen  350 -------------------------------------------------------------VAVFQGHTDTVTSVVFNTD  368 (481)
T ss_pred             -------------------------------------------------------------eeeecccccceeEEEEecC
Confidence                                                                         0013589999999999876


Q ss_pred             CCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCC-ceEEEEeecCce----EEEeccc
Q 013274          321 GMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMT-AVKAFDIWSGKT----CLTFRGH  395 (446)
Q Consensus       321 g~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~----~~~l~gH  395 (446)
                      - .+++|+.|.+||+||+.+-+..+..+..    .+....++.+....+++.+.++ .+++||+.-..+    ....+||
T Consensus       369 d-~vVSgSDDrTvKvWdLrNMRsplATIRt----dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgH  443 (481)
T KOG0300|consen  369 D-RVVSGSDDRTVKVWDLRNMRSPLATIRT----DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGH  443 (481)
T ss_pred             C-ceeecCCCceEEEeeeccccCcceeeec----CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCccccccc
Confidence            5 5789999999999999987655443322    2345567777777788888775 789999954332    2356799


Q ss_pred             ccceEEEEEcCCCC--EEEEeeCCCcEEEeCCCCCCC
Q 013274          396 YEYVNCCCFSSQDQ--ELYTGGNDRQILVWCPSRHIS  430 (446)
Q Consensus       396 ~~~v~~~~fSpd~~--~lvtgs~D~~v~vW~~~~~~~  430 (446)
                      ..-|.|++|+.+.-  -|.||+-|+.+.-|.+..+.+
T Consensus       444 rRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~~  480 (481)
T KOG0300|consen  444 RRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPTS  480 (481)
T ss_pred             ceeeeeeeccccCcccccccccccceeeeeEecccCC
Confidence            99999999997643  478999999999999987764

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=1.9e-25  Score=201.80  Aligned_cols=278  Identities=19%  Similarity=0.317  Sum_probs=217.1

Q ss_pred             cceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEe
Q 013274           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS  123 (446)
Q Consensus        44 ~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s  123 (446)
                      ..+.++...+. ...++||+.|.++.++|...+...                 ..+.||...|+++.+++ +...++++|
T Consensus       220 pgi~ald~~~s-~~~ilTGG~d~~av~~d~~s~q~l-----------------~~~~Gh~kki~~v~~~~-~~~~v~~aS  280 (506)
T KOG0289|consen  220 PGITALDIIPS-SSKILTGGEDKTAVLFDKPSNQIL-----------------ATLKGHTKKITSVKFHK-DLDTVITAS  280 (506)
T ss_pred             CCeeEEeecCC-CCcceecCCCCceEEEecchhhhh-----------------hhccCcceEEEEEEecc-chhheeecC
Confidence            56777877764 578999999999999998655421                 23469999999999887 778999999


Q ss_pred             CCCeEEEEECCCCeeeE-EEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeC--CCCCeEEEEEec
Q 013274          124 YDHYVKVWDTNCTRVVM-NFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG--HRDGIMTVEWST  200 (446)
Q Consensus       124 ~D~~i~iWd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~--h~~~v~sv~~s~  200 (446)
                      .|..|+||......... ...+.+++..+..++   ++.+|++++.|+.+-+.|++++..+.....  ..-.+++.+|+|
T Consensus       281 ad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~---tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp  357 (506)
T KOG0289|consen  281 ADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHP---TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP  357 (506)
T ss_pred             CcceEEeeccccccCccccccccccceeeeecc---CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC
Confidence            99999999986544322 233456676666666   456999999999999999999987655443  334589999999


Q ss_pred             CCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecc
Q 013274          201 SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSS  280 (446)
Q Consensus       201 ~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (446)
                      ||- +|.+|..||.++|||+..+...                                                      
T Consensus       358 DgL-ifgtgt~d~~vkiwdlks~~~~------------------------------------------------------  382 (506)
T KOG0289|consen  358 DGL-IFGTGTPDGVVKIWDLKSQTNV------------------------------------------------------  382 (506)
T ss_pred             Cce-EEeccCCCceEEEEEcCCcccc------------------------------------------------------
Confidence            985 7899999999999999754211                                                      


Q ss_pred             cceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecC-CCe
Q 013274          281 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTS-KPI  359 (446)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~-~~~  359 (446)
                                            .++.+|.++|.+++|+.+|-||+++..|+.|++||++..+    .+.+...... ...
T Consensus       383 ----------------------a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~----n~kt~~l~~~~~v~  436 (506)
T KOG0289|consen  383 ----------------------AKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK----NFKTIQLDEKKEVN  436 (506)
T ss_pred             ----------------------ccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc----ccceeeccccccce
Confidence                                  0234799999999999999999999999999999998754    2333333322 355


Q ss_pred             EEEEcCCCcEEEEeCCCceEEEEee----cCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCC
Q 013274          360 QLATTQDPAVVFVPCMTAVKAFDIW----SGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP  425 (446)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~d~~----~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~  425 (446)
                      .+.+...+.++..+ +..++++-..    ++..+.++..|.+..+++.|..+.++|++||+|..+++..+
T Consensus       437 s~~fD~SGt~L~~~-g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  437 SLSFDQSGTYLGIA-GSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             eEEEcCCCCeEEee-cceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            67777777777666 5566666554    56778899999999999999999999999999999998754

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1e-25  Score=206.60  Aligned_cols=282  Identities=22%  Similarity=0.338  Sum_probs=213.5

Q ss_pred             EeCCCccceeEEEeecCCC-CEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC
Q 013274           38 IVSPHKGSINSLQVDLTEE-RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (446)
Q Consensus        38 ~~~~H~~~v~~l~~s~~~~-~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~  116 (446)
                      +.+.| .+|.+|+|+|... ++.+|+|.  .+.||+..+....                 ..+..-+..|+++.|-. ||
T Consensus        22 ~~ke~-~~vssl~fsp~~P~d~aVt~S~--rvqly~~~~~~~~-----------------k~~srFk~~v~s~~fR~-DG   80 (487)
T KOG0310|consen   22 VHKEH-NSVSSLCFSPKHPYDFAVTSSV--RVQLYSSVTRSVR-----------------KTFSRFKDVVYSVDFRS-DG   80 (487)
T ss_pred             ccccc-CcceeEecCCCCCCceEEeccc--EEEEEecchhhhh-----------------hhHHhhccceeEEEeec-CC
Confidence            34445 5799999998554 34555443  6889987643211                 11123455677776654 89


Q ss_pred             cEEEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEE
Q 013274          117 GLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT  195 (446)
Q Consensus       117 ~~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~s  195 (446)
                      .+||.|+..|.|+|+|..+...++.+. +..+++.+.|++.  +..++++|+.|..+++||+.++..+..+.+|++.|.+
T Consensus        81 ~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~--d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~  158 (487)
T KOG0310|consen   81 RLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQ--DNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC  158 (487)
T ss_pred             eEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEeccc--CCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence            999999999999999977654555443 3456777788875  4578999999999999999999877789999999999


Q ss_pred             EEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCc
Q 013274          196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNG  275 (446)
Q Consensus       196 v~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (446)
                      .+|+|....+++|||-||+||+||+|.... ..                                               
T Consensus       159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~~-~v-----------------------------------------------  190 (487)
T KOG0310|consen  159 GDISPANDHIVVTGSYDGKVRLWDTRSLTS-RV-----------------------------------------------  190 (487)
T ss_pred             eccccCCCeEEEecCCCceEEEEEeccCCc-ee-----------------------------------------------
Confidence            999999888899999999999999986310 00                                               


Q ss_pred             eeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeec
Q 013274          276 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT  355 (446)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~  355 (446)
                                                  ....|..+|-.|.|-|.|..++|+|.. .||+||+.+|...+....   .+.
T Consensus       191 ----------------------------~elnhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~---~H~  238 (487)
T KOG0310|consen  191 ----------------------------VELNHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMF---NHN  238 (487)
T ss_pred             ----------------------------EEecCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhh---ccc
Confidence                                        012466789999999999999998755 699999998765433211   123


Q ss_pred             CCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEe
Q 013274          356 SKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW  423 (446)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW  423 (446)
                      ....++.+..++..+++++. ..+++||+.+.+.+..+. -.++|.+++.|||++.+|-|-.||.+.+-
T Consensus       239 KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~r  306 (487)
T KOG0310|consen  239 KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIR  306 (487)
T ss_pred             ceEEEEEeecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeee
Confidence            34556777777788887765 589999988888777654 45789999999999999999999999887

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.95  E-value=1.7e-26  Score=205.40  Aligned_cols=212  Identities=27%  Similarity=0.529  Sum_probs=168.8

Q ss_pred             eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcC--CCCCCc----------cccccceEEeccccccCccccE
Q 013274           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATD--YEGGGH----------IAKHRSVFVVDKQHEHGHKYAI  106 (446)
Q Consensus        39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~--~~~~~~----------~~~~~~~~~~~~~~~~gh~~~V  106 (446)
                      ..||.++|-+++..+ ++..++|||-|.+++||+.++...  ++....          ..+.+.    ......||...|
T Consensus       189 ~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~----P~vtl~GHt~~V  263 (423)
T KOG0313|consen  189 CRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRT----PLVTLEGHTEPV  263 (423)
T ss_pred             hcccccceeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccC----ceEEecccccce
Confidence            349999999999986 577899999999999999432211  111000          000000    011346999999


Q ss_pred             eEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc---ee
Q 013274          107 SSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA---IS  183 (446)
Q Consensus       107 ~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~---~~  183 (446)
                      .++.|.+  ...++|+|+|++|+.||++++..+.++..+...+++...+.   ..+|++|+.|..+++||.+++.   ..
T Consensus       264 s~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~---~~Ll~~gssdr~irl~DPR~~~gs~v~  338 (423)
T KOG0313|consen  264 SSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPL---SKLLASGSSDRHIRLWDPRTGDGSVVS  338 (423)
T ss_pred             eeEEEcC--CCceEeecccceEEEEEeecccceeeeecCcceeEeecccc---cceeeecCCCCceeecCCCCCCCceeE
Confidence            9999976  56899999999999999999999988888777888888774   4589999999999999998773   56


Q ss_pred             eeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCc-eeEEeecccccccCCCcccccceeeccccccCCCCCcC
Q 013274          184 QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG-CFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVK  262 (446)
Q Consensus       184 ~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (446)
                      ++|.||++-|.++.|+|.+.+.|+|++.|+++++||+|..+ .+.                                   
T Consensus       339 ~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~ply-----------------------------------  383 (423)
T KOG0313|consen  339 QSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLY-----------------------------------  383 (423)
T ss_pred             EeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcce-----------------------------------
Confidence            78999999999999999999999999999999999998642 110                                   


Q ss_pred             CCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEe
Q 013274          263 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWD  337 (446)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd  337 (446)
                                                               ...+|...|.++.|. ++.+++|||.|.+|+++.
T Consensus       384 -----------------------------------------dI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~  416 (423)
T KOG0313|consen  384 -----------------------------------------DIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFK  416 (423)
T ss_pred             -----------------------------------------eeccCCceEEEEecc-CCceEEeccCcceEEEec
Confidence                                                     124678889999997 477999999999999984

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.95  E-value=1e-24  Score=201.34  Aligned_cols=245  Identities=29%  Similarity=0.489  Sum_probs=196.6

Q ss_pred             cCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecC-CceEEeeeccCCCCceEEEEeeCCCcEEEEeCC
Q 013274          100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA  178 (446)
Q Consensus       100 ~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~  178 (446)
                      .+|+..|.++.++| +++++++++.|+.|++|++.+++....+... ..+..+.+.+..   ..+++++.|+.|++||++
T Consensus         6 ~~h~~~i~~~~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~~~~i~i~~~~   81 (289)
T cd00200           6 KGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG---TYLASGSSDKTIRLWDLE   81 (289)
T ss_pred             cccCCCEEEEEEcC-CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCC---CEEEEEcCCCeEEEEEcC
Confidence            58999999999987 6789999999999999999887766555433 334466676643   578889999999999999


Q ss_pred             CCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCC
Q 013274          179 SGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQN  258 (446)
Q Consensus       179 ~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (446)
                      +++....+..|...+.++.|+|+++ ++++++.|+.|++||+++.+....+                             
T Consensus        82 ~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~-----------------------------  131 (289)
T cd00200          82 TGECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKCLTTL-----------------------------  131 (289)
T ss_pred             cccceEEEeccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCcEEEEEe-----------------------------
Confidence            9888888999999999999999865 5677778999999998754322211                             


Q ss_pred             CCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEec
Q 013274          259 SSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDV  338 (446)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~  338 (446)
                                                                     ..|...|.++.|+|++.++++++.|+.|++||+
T Consensus       132 -----------------------------------------------~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~  164 (289)
T cd00200         132 -----------------------------------------------RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL  164 (289)
T ss_pred             -----------------------------------------------ccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEc
Confidence                                                           135567999999999999998888999999999


Q ss_pred             CcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeC-CCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCC
Q 013274          339 ESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND  417 (446)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D  417 (446)
                      .+++...    ...........+.+.+++..+++++ ...+++||+.+++....+..|...+.+++|+|++.++++++.|
T Consensus       165 ~~~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  240 (289)
T cd00200         165 RTGKCVA----TLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSED  240 (289)
T ss_pred             cccccce----eEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCC
Confidence            8654321    1122233456678888886666554 5789999999999999998999999999999999999999999


Q ss_pred             CcEEEeCCCCCC
Q 013274          418 RQILVWCPSRHI  429 (446)
Q Consensus       418 ~~v~vW~~~~~~  429 (446)
                      +.|++|+.....
T Consensus       241 ~~i~i~~~~~~~  252 (289)
T cd00200         241 GTIRVWDLRTGE  252 (289)
T ss_pred             CcEEEEEcCCce
Confidence            999999998544

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=4.1e-26  Score=192.89  Aligned_cols=245  Identities=21%  Similarity=0.349  Sum_probs=184.8

Q ss_pred             eEEEeecCCCCEEEEe-e------CCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEE
Q 013274           47 NSLQVDLTEERYLLSG-A------SDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF  119 (446)
Q Consensus        47 ~~l~~s~~~~~~l~s~-s------~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l  119 (446)
                      ++++|||-..+.|+.+ +      ..|++.|-++....-      +   ..+     ++ ..-...+..++|++....++
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~g------i---~e~-----~s-~d~~D~LfdV~Wse~~e~~~   76 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKG------I---QEC-----QS-YDTEDGLFDVAWSENHENQV   76 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCC------e---EEE-----Ee-eecccceeEeeecCCCcceE
Confidence            7899998755555444 2      236677777652211      0   000     00 12345677889998888899


Q ss_pred             EEEeCCCeEEEEECCCC-eeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEE
Q 013274          120 VTGSYDHYVKVWDTNCT-RVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVE  197 (446)
Q Consensus       120 ~s~s~D~~i~iWd~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~  197 (446)
                      ++++-||++++||+.-. .++..++ +...++++.+....  ...++++|-|++||+||..-++.++++.||...|..+.
T Consensus        77 ~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~--r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~  154 (311)
T KOG0277|consen   77 IAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVR--RRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAA  154 (311)
T ss_pred             EEEecCceEEEeccCCCCcchhHHHhhhhheEEecccccc--ceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEe
Confidence            99999999999996432 3455444 33457777776643  35677779999999999999999999999999999999


Q ss_pred             EecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCcee
Q 013274          198 WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVR  277 (446)
Q Consensus       198 ~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (446)
                      |+|....+++++|.|++.++||+|..+....                                                 
T Consensus       155 ~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-------------------------------------------------  185 (311)
T KOG0277|consen  155 FSPHIPNLFASASGDGTLRLWDVRSPGKFMS-------------------------------------------------  185 (311)
T ss_pred             cCCCCCCeEEEccCCceEEEEEecCCCceeE-------------------------------------------------
Confidence            9999989999999999999999985421111                                                 


Q ss_pred             ecccceeecCCccccccCCCcccccccccccccCeEEEEEcc-CCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecC
Q 013274          278 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE-DGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTS  356 (446)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~  356 (446)
                                                 ..+|...|.++.|+. +...|+||+.|+.||+||+++-+.             
T Consensus       186 ---------------------------i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~-------------  225 (311)
T KOG0277|consen  186 ---------------------------IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT-------------  225 (311)
T ss_pred             ---------------------------EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccc-------------
Confidence                                       235677799999986 456899999999999999986432             


Q ss_pred             CCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCC-CEEEEeeCCCcEEEeCCCCC
Q 013274          357 KPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQD-QELYTGGNDRQILVWCPSRH  428 (446)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~-~~lvtgs~D~~v~vW~~~~~  428 (446)
                                                     ++..|.||.-.|..+.|||-. ..|+|||.|-++|||+++..
T Consensus       226 -------------------------------pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~  267 (311)
T KOG0277|consen  226 -------------------------------PLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ  267 (311)
T ss_pred             -------------------------------cceeecCCceEEEEEecCcchhhHhhhccccceEEecccccc
Confidence                                           123457899999999999975 56889999999999999844

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=2.4e-25  Score=216.67  Aligned_cols=256  Identities=18%  Similarity=0.359  Sum_probs=195.6

Q ss_pred             ceeccccceeEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEe
Q 013274           28 STLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAIS  107 (446)
Q Consensus        28 ~~~~~~~~~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~  107 (446)
                      ..+.|...-.-+-.|.|+|..+.|.| ...++|||+.|-+|+|||.++..+.                 .++.||-.-|.
T Consensus        36 WDYRM~tli~rFdeHdGpVRgv~FH~-~qplFVSGGDDykIkVWnYk~rrcl-----------------ftL~GHlDYVR   97 (1202)
T KOG0292|consen   36 WDYRMGTLIDRFDEHDGPVRGVDFHP-TQPLFVSGGDDYKIKVWNYKTRRCL-----------------FTLLGHLDYVR   97 (1202)
T ss_pred             ehhhhhhHHhhhhccCCccceeeecC-CCCeEEecCCccEEEEEecccceeh-----------------hhhccccceeE
Confidence            34444443333568999999999997 4679999999999999998765532                 23468999999


Q ss_pred             EEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCc-eEEeeeccCCCCceEEEEeeCCCcEEEEeCCC-------
Q 013274          108 SAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK-VYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS-------  179 (446)
Q Consensus       108 ~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~-------  179 (446)
                      .+.|++ .-..++|+|+|.|||||+-.+++++..++.+.+ +.+..|+|   ...+++|+|.|-+|+|||+..       
T Consensus        98 t~~FHh-eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp---tEDlIVSaSLDQTVRVWDisGLRkk~~~  173 (1202)
T KOG0292|consen   98 TVFFHH-EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP---TEDLIVSASLDQTVRVWDISGLRKKNKA  173 (1202)
T ss_pred             EeeccC-CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCC---ccceEEEecccceEEEEeecchhccCCC
Confidence            888876 456999999999999999999999988775444 55666666   456899999999999999841       


Q ss_pred             -C---------------------ceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeeccccccc
Q 013274          180 -G---------------------AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLG  237 (446)
Q Consensus       180 -~---------------------~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~  237 (446)
                       +                     .....+.||.-.|..++|.|.-+ +++||+.|..|++|.+...+..           
T Consensus       174 pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetKaW-----------  241 (1202)
T KOG0292|consen  174 PGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAW-----------  241 (1202)
T ss_pred             CCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcceeeEEEeccccce-----------
Confidence             1                     01235789999999999999877 5899999999999987532100           


Q ss_pred             CCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEE
Q 013274          238 RRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKV  317 (446)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~f  317 (446)
                                                                         .            .+...+|.+.|+++.|
T Consensus       242 ---------------------------------------------------E------------vDtcrgH~nnVssvlf  258 (1202)
T KOG0292|consen  242 ---------------------------------------------------E------------VDTCRGHYNNVSSVLF  258 (1202)
T ss_pred             ---------------------------------------------------e------------ehhhhcccCCcceEEe
Confidence                                                               0            0123589999999999


Q ss_pred             ccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEee
Q 013274          318 TEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIW  384 (446)
Q Consensus       318 s~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  384 (446)
                      +|....++|.|.|++||+||+...+..    ...+.....=-.++..|...+++.+.++.+.+|.+.
T Consensus       259 hp~q~lIlSnsEDksirVwDm~kRt~v----~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkle  321 (1202)
T KOG0292|consen  259 HPHQDLILSNSEDKSIRVWDMTKRTSV----QTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLE  321 (1202)
T ss_pred             cCccceeEecCCCccEEEEecccccce----eeeeccCCeEEEEEecCCcceeeeecCCceEEEEEc
Confidence            999999999999999999999876432    222222233345677778888887878888888775

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=5.2e-26  Score=216.52  Aligned_cols=312  Identities=19%  Similarity=0.295  Sum_probs=225.6

Q ss_pred             CCccceeEEEeec-----------CCCCEEEEeeCCCcEEEEEcccCcC---CCCC---------------Cccccccce
Q 013274           41 PHKGSINSLQVDL-----------TEERYLLSGASDSSVAVYDVQRATD---YEGG---------------GHIAKHRSV   91 (446)
Q Consensus        41 ~H~~~v~~l~~s~-----------~~~~~l~s~s~Dg~i~lWd~~~~~~---~~~~---------------~~~~~~~~~   91 (446)
                      -|+..|+.+..-|           +.+. ++|+|+|++||+||++....   +...               ..++.....
T Consensus       367 yHS~ciW~Ve~~p~nv~~~~~aclp~~c-F~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~  445 (1080)
T KOG1408|consen  367 YHSACIWDVENLPCNVHSPTAACLPRGC-FTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASA  445 (1080)
T ss_pred             eccceeeeeccccccccCcccccCCccc-eeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccC
Confidence            4778888775322           2233 78999999999999875321   1000               000000000


Q ss_pred             EEecc--ccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeC
Q 013274           92 FVVDK--QHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTE  168 (446)
Q Consensus        92 ~~~~~--~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~  168 (446)
                      -.+++  ....+.+.+|.+++.+| ++++||+|..-|+++|+++..-.....+. +...+.++.++.-.....+||+++.
T Consensus       446 ~~fdka~~s~~d~r~G~R~~~vSp-~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasr  524 (1080)
T KOG1408|consen  446 GIFDKALVSTCDSRFGFRALAVSP-DGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASR  524 (1080)
T ss_pred             CcccccchhhcCcccceEEEEECC-CcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccC
Confidence            00000  01235667899999987 89999999999999999997655544443 3455777777765556679999999


Q ss_pred             CCcEEEEeCCCC-ceeeeeeCCCCCeEEEEEecCC-CeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccc
Q 013274          169 DVQVRLCDIASG-AISQTLSGHRDGIMTVEWSTSS-EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRK  246 (446)
Q Consensus       169 d~~v~vwd~~~~-~~~~~l~~h~~~v~sv~~s~~~-~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (446)
                      |..|+|+|+... .+++++.+|...|++|.|.-++ +.-|+|++.|..|.+--.++...-+.+...              
T Consensus       525 dRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~--------------  590 (1080)
T KOG1408|consen  525 DRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRH--------------  590 (1080)
T ss_pred             CceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecccc--------------
Confidence            999999999765 5778999999999999998766 345889999998765432221100000000              


Q ss_pred             eeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEE
Q 013274          247 VSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLS  326 (446)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s  326 (446)
                                                                              ..... ...+..|+..|..+++++
T Consensus       591 --------------------------------------------------------t~t~~-ktTlYDm~Vdp~~k~v~t  613 (1080)
T KOG1408|consen  591 --------------------------------------------------------TQTLS-KTTLYDMAVDPTSKLVVT  613 (1080)
T ss_pred             --------------------------------------------------------ccccc-cceEEEeeeCCCcceEEE
Confidence                                                                    00011 234788999999999999


Q ss_pred             eecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCC-ceEEEEeecCceEEEecccccceEEEEEc
Q 013274          327 AGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMT-AVKAFDIWSGKTCLTFRGHYEYVNCCCFS  405 (446)
Q Consensus       327 gs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~l~gH~~~v~~~~fS  405 (446)
                      +..|+.|||||++++++.. .|..-..+.+..+.+...|.+.+++..|.+ .+-++|..+++++.+..||...|+.|.|+
T Consensus       614 ~cQDrnirif~i~sgKq~k-~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~  692 (1080)
T KOG1408|consen  614 VCQDRNIRIFDIESGKQVK-SFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFL  692 (1080)
T ss_pred             EecccceEEEeccccceee-eecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeec
Confidence            9999999999999987532 233323334567788899999998888765 78899999999999999999999999999


Q ss_pred             CCCCEEEEeeCCCcEEEeCCC
Q 013274          406 SQDQELYTGGNDRQILVWCPS  426 (446)
Q Consensus       406 pd~~~lvtgs~D~~v~vW~~~  426 (446)
                      +|.+.|++.+.|++|.||.++
T Consensus       693 nDCkHlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  693 NDCKHLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             ccchhheeecCCceEEEEECc
Confidence            999999999999999999886

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=2.7e-26  Score=192.89  Aligned_cols=259  Identities=20%  Similarity=0.354  Sum_probs=196.7

Q ss_pred             eEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEE-eecC
Q 013274           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIW-YPVD  115 (446)
Q Consensus        37 ~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~-~~~~  115 (446)
                      ++.+.|...|..+.++. .|+.|||+|+|++|||+.+......           .+   ..++.||.++|+.+.| +|.-
T Consensus         5 ~idt~H~D~IHda~lDy-ygkrlATcsSD~tVkIf~v~~n~~s-----------~l---l~~L~Gh~GPVwqv~wahPk~   69 (299)
T KOG1332|consen    5 TIDTQHEDMIHDAQLDY-YGKRLATCSSDGTVKIFEVRNNGQS-----------KL---LAELTGHSGPVWKVAWAHPKF   69 (299)
T ss_pred             ehhhhhhhhhhHhhhhh-hcceeeeecCCccEEEEEEcCCCCc-----------ee---eeEecCCCCCeeEEeeccccc
Confidence            45678999999998875 5789999999999999998654310           01   1245799999999999 5677


Q ss_pred             CcEEEEEeCCCeEEEEECCCCeeeEEEe---cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC---ceeeeeeCC
Q 013274          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFK---MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG---AISQTLSGH  189 (446)
Q Consensus       116 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~---~~~~~l~~h  189 (446)
                      |.+|||+|+|+.|.||.-..++-.+.+.   +.+.++++++.|... ..+||+++.||.|.|.+.++.   .-.+....|
T Consensus        70 G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~waphey-gl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH  148 (299)
T KOG1332|consen   70 GTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEY-GLLLACASSDGKVSVLTYDSSGGWTTSKIVFAH  148 (299)
T ss_pred             CcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeeccccccc-ceEEEEeeCCCcEEEEEEcCCCCccchhhhhcc
Confidence            8999999999999999988875443333   345688899988765 467899999999999998765   123455679


Q ss_pred             CCCeEEEEEecC---C----------CeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccC
Q 013274          190 RDGIMTVEWSTS---S----------EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAG  256 (446)
Q Consensus       190 ~~~v~sv~~s~~---~----------~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (446)
                      .-.|++|+|.|.   +          -.-|+||+.|+.|+||+...+.                                
T Consensus       149 ~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~--------------------------------  196 (299)
T KOG1332|consen  149 EIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS--------------------------------  196 (299)
T ss_pred             ccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc--------------------------------
Confidence            999999999987   3          0237999999999999875421                                


Q ss_pred             CCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCC----CEEEEeecCCc
Q 013274          257 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG----MYLLSAGSDSR  332 (446)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg----~~l~sgs~D~~  332 (446)
                                                                +.....+.+|.+.|+.+++.|.-    .+|+|+|.||+
T Consensus       197 ------------------------------------------w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~  234 (299)
T KOG1332|consen  197 ------------------------------------------WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT  234 (299)
T ss_pred             ------------------------------------------hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCc
Confidence                                                      00011246899999999999964    48999999999


Q ss_pred             EEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEE
Q 013274          333 IRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELY  412 (446)
Q Consensus       333 i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lv  412 (446)
                      +-||......      +                                 -|+.++++.   -...++.+.||+-|..|+
T Consensus       235 viIwt~~~e~------e---------------------------------~wk~tll~~---f~~~~w~vSWS~sGn~La  272 (299)
T KOG1332|consen  235 VIIWTKDEEY------E---------------------------------PWKKTLLEE---FPDVVWRVSWSLSGNILA  272 (299)
T ss_pred             EEEEEecCcc------C---------------------------------ccccccccc---CCcceEEEEEeccccEEE
Confidence            9999654210      0                                 012222233   236789999999999999


Q ss_pred             EeeCCCcEEEeCCCC
Q 013274          413 TGGNDRQILVWCPSR  427 (446)
Q Consensus       413 tgs~D~~v~vW~~~~  427 (446)
                      .++.|+.|.+|..+.
T Consensus       273 Vs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  273 VSGGDNKVTLWKENV  287 (299)
T ss_pred             EecCCcEEEEEEeCC
Confidence            999999999996653

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=3e-25  Score=202.04  Aligned_cols=300  Identities=19%  Similarity=0.336  Sum_probs=216.4

Q ss_pred             eEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCC---CCCcccc-ccceEEeccccccCccccEeEEEEe
Q 013274           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYE---GGGHIAK-HRSVFVVDKQHEHGHKYAISSAIWY  112 (446)
Q Consensus        37 ~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~gh~~~V~~~~~~  112 (446)
                      .+...|.-+|.+|.+++ ++.+..++|.|++|.-|++.++....   ....+.+ +..-  . +.+..+|...+.+++.+
T Consensus       136 ~~~~~H~~s~~~vals~-d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~--~-k~~r~~h~keil~~avS  211 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVALSP-DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNP--L-KESRKGHVKEILTLAVS  211 (479)
T ss_pred             eeeccccCcceEEEeec-cccceeecCCCcceeeeehhcCcccccccccchhhhhccCC--C-CcccccccceeEEEEEc
Confidence            34578999999999986 57889999999999999998775321   0000000 1100  0 11114899999999998


Q ss_pred             ecCCcEEEEEeCCCeEEEEECCCCeeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCC
Q 013274          113 PVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD  191 (446)
Q Consensus       113 ~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~  191 (446)
                      + |+++||||+.|..|.||+..+.+.+..+.. .+.+.+++|-.   +...+.+++.|.+|++|+++...++.++.||++
T Consensus       212 ~-Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~---gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd  287 (479)
T KOG0299|consen  212 S-DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK---GTSELYSASADRSVKVWSIDQLSYVETLYGHQD  287 (479)
T ss_pred             C-CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeec---CccceeeeecCCceEEEehhHhHHHHHHhCCcc
Confidence            7 899999999999999999999998887653 34455555543   234578889999999999999999999999999


Q ss_pred             CeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCcccccc
Q 013274          192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSA  271 (446)
Q Consensus       192 ~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (446)
                      .|.+|....-.+ ++..|+.|+++++|++....  +.                                           
T Consensus       288 ~v~~IdaL~reR-~vtVGgrDrT~rlwKi~ees--ql-------------------------------------------  321 (479)
T KOG0299|consen  288 GVLGIDALSRER-CVTVGGRDRTVRLWKIPEES--QL-------------------------------------------  321 (479)
T ss_pred             ceeeechhcccc-eEEeccccceeEEEeccccc--ee-------------------------------------------
Confidence            999998765443 55556699999999984211  00                                           


Q ss_pred             CCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEE
Q 013274          272 NGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV  351 (446)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~  351 (446)
                                                      ...+|.+.+-|++|-.+. .++|||.||.|.+|++.+.++.+..-...
T Consensus       322 --------------------------------ifrg~~~sidcv~~In~~-HfvsGSdnG~IaLWs~~KKkplf~~~~AH  368 (479)
T KOG0299|consen  322 --------------------------------IFRGGEGSIDCVAFINDE-HFVSGSDNGSIALWSLLKKKPLFTSRLAH  368 (479)
T ss_pred             --------------------------------eeeCCCCCeeeEEEeccc-ceeeccCCceEEEeeecccCceeEeeccc
Confidence                                            123556778899987554 57799999999999999877544321111


Q ss_pred             EeecC--------CCeEEEEcCCCcEEEEeCC-CceEEEEeecC----ceEEEecccccceEEEEEcCCCCEEE-EeeCC
Q 013274          352 RLQTS--------KPIQLATTQDPAVVFVPCM-TAVKAFDIWSG----KTCLTFRGHYEYVNCCCFSSQDQELY-TGGND  417 (446)
Q Consensus       352 ~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~----~~~~~l~gH~~~v~~~~fSpd~~~lv-tgs~D  417 (446)
                      .....        -...++..+...++++++. +.+++|.+.++    .++..++ -.+.|+.++|+++|++|+ ..+-.
T Consensus       369 gv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkE  447 (479)
T KOG0299|consen  369 GVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKE  447 (479)
T ss_pred             cccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccc
Confidence            11111        2345777788888888754 68999999887    3445555 678999999999999655 44555


Q ss_pred             CcEEEeC
Q 013274          418 RQILVWC  424 (446)
Q Consensus       418 ~~v~vW~  424 (446)
                      .-+=-|-
T Consensus       448 hRlGRW~  454 (479)
T KOG0299|consen  448 HRLGRWW  454 (479)
T ss_pred             cccceee
Confidence            5555553

>PTZ00420 coronin; Provisional

Probab=99.94  E-value=1.2e-24  Score=214.81  Aligned_cols=172  Identities=20%  Similarity=0.373  Sum_probs=134.7

Q ss_pred             EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (446)
Q Consensus        38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~  117 (446)
                      .+.+|.+.|.+++|+|.++.+|+|||.|++|+|||+.++.....  .+  ..++     ....+|...|.++.|+|....
T Consensus        69 ~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~--~i--~~p~-----~~L~gH~~~V~sVaf~P~g~~  139 (568)
T PTZ00420         69 KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK--EI--KDPQ-----CILKGHKKKISIIDWNPMNYY  139 (568)
T ss_pred             EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc--cc--ccce-----EEeecCCCcEEEEEECCCCCe
Confidence            46799999999999986678999999999999999975421000  00  0011     123589999999999985555


Q ss_pred             EEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEE-
Q 013274          118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTV-  196 (446)
Q Consensus       118 ~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv-  196 (446)
                      +|+|+|.|++|+|||+.+++.+..+.+...+.+++|++.   +.+|++++.|+.|+|||++++..+..+.+|.+.+.+. 
T Consensus       140 iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~Slswspd---G~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~  216 (568)
T PTZ00420        140 IMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIK---GNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKN  216 (568)
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCC---CCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEE
Confidence            678999999999999999887777776677888888875   4588999999999999999999999999998875433 


Q ss_pred             ----EEecCCCeEEEEeeCCC----cEEEEEccC
Q 013274          197 ----EWSTSSEWILVTGGCDG----AIRFWDIRR  222 (446)
Q Consensus       197 ----~~s~~~~~~l~S~s~Dg----~I~iWd~~~  222 (446)
                          .|++++++ ++|++.|+    +|+|||+++
T Consensus       217 v~~~~fs~d~~~-IlTtG~d~~~~R~VkLWDlr~  249 (568)
T PTZ00420        217 IWIDGLGGDDNY-ILSTGFSKNNMREMKLWDLKN  249 (568)
T ss_pred             EEeeeEcCCCCE-EEEEEcCCCCccEEEEEECCC
Confidence                34577775 56777664    799999985

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.94  E-value=2.5e-25  Score=222.03  Aligned_cols=301  Identities=16%  Similarity=0.253  Sum_probs=209.6

Q ss_pred             CCccceeEEEeecCCCCEEEEee--CCCcEEEEEcccCcC-CC-CCCccccccceEEeccccccCccccEeEEEEeecCC
Q 013274           41 PHKGSINSLQVDLTEERYLLSGA--SDSSVAVYDVQRATD-YE-GGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (446)
Q Consensus        41 ~H~~~v~~l~~s~~~~~~l~s~s--~Dg~i~lWd~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~  116 (446)
                      .+...|+++..+| ++..++||+  .|+.++||+.+..-. .+ ....+.++  +     ..-..|.+.|.|+.|++ ||
T Consensus        11 H~~~~IfSIdv~p-dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~--l-----~~m~~h~~sv~CVR~S~-dG   81 (942)
T KOG0973|consen   11 HNEKSIFSIDVHP-DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKH--L-----CTMDDHDGSVNCVRFSP-DG   81 (942)
T ss_pred             cCCeeEEEEEecC-CceeEecCCccccccceeeccccccchhhhhhcccchh--h-----eeeccccCceeEEEECC-CC
Confidence            3457899999997 678899999  999999999653211 00 00001111  1     11246999999998987 89


Q ss_pred             cEEEEEeCCCeEEEEECCC-------C-----------eeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeC
Q 013274          117 GLFVTGSYDHYVKVWDTNC-------T-----------RVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI  177 (446)
Q Consensus       117 ~~l~s~s~D~~i~iWd~~~-------~-----------~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~  177 (446)
                      ++||+||+|+.|.||.-+.       +           ++...+. +.+.+..++++|   +..++++++.|++|.+||.
T Consensus        82 ~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp---~~~~lvS~s~DnsViiwn~  158 (942)
T KOG0973|consen   82 SYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP---DDSLLVSVSLDNSVIIWNA  158 (942)
T ss_pred             CeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC---CccEEEEecccceEEEEcc
Confidence            9999999999999999762       0           1122222 344566777777   4469999999999999999


Q ss_pred             CCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCC
Q 013274          178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQ  257 (446)
Q Consensus       178 ~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (446)
                      .+.+.++.+.+|.+.|..|.|.|-|++ |+|-+.|++|++|++.+-++.+++.............               
T Consensus       159 ~tF~~~~vl~~H~s~VKGvs~DP~Gky-~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f---------------  222 (942)
T KOG0973|consen  159 KTFELLKVLRGHQSLVKGVSWDPIGKY-FASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFF---------------  222 (942)
T ss_pred             ccceeeeeeecccccccceEECCccCe-eeeecCCceEEEEEcccceeeEeeccchhhCCCccee---------------
Confidence            999999999999999999999999996 7999999999999987766666664433221111000               


Q ss_pred             CCCcCCCCccccccCCCceeecccceeecC-------CccccccCCCcccccccccccccCeEEEEEccC--------C-
Q 013274          258 NSSVKPRAPQKRSANGNGVRQSSVGRIPAK-------GSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED--------G-  321 (446)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~d--------g-  321 (446)
                                      .-..++|.|.+.+.       .....-+..+.+.....+.||.+++.++.|+|.        | 
T Consensus       223 ----------------~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~  286 (942)
T KOG0973|consen  223 ----------------LRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGT  286 (942)
T ss_pred             ----------------eecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCC
Confidence                            00112222222111       111222333445555567899999999999971        1 


Q ss_pred             ----C----EEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEec
Q 013274          322 ----M----YLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFR  393 (446)
Q Consensus       322 ----~----~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~  393 (446)
                          .    .+|+||.|++|-||.....++.++..+                                          + 
T Consensus       287 ~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~------------------------------------------l-  323 (942)
T KOG0973|consen  287 STQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHN------------------------------------------L-  323 (942)
T ss_pred             ccCCCcceEEEEEecCCccEEEEecCCCCchhhhhh------------------------------------------h-
Confidence                1    578999999999998765543221100                                          0 


Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCC
Q 013274          394 GHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI  429 (446)
Q Consensus       394 gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~  429 (446)
                       -...|.+++|||||..|..||.||+|.+...+...
T Consensus       324 -f~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  324 -FNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE  358 (942)
T ss_pred             -hcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence             12469999999999999999999999999887543

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.3e-25  Score=205.94  Aligned_cols=238  Identities=23%  Similarity=0.365  Sum_probs=190.6

Q ss_pred             ccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCce
Q 013274          104 YAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI  182 (446)
Q Consensus       104 ~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~  182 (446)
                      ..|.++.|+|....-+|+++. -.+.|++..+....+++. ....++++.|-.+   +.++|+|...|.|+|||.++...
T Consensus        27 ~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~D---G~LlaaGD~sG~V~vfD~k~r~i  102 (487)
T KOG0310|consen   27 NSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSD---GRLLAAGDESGHVKVFDMKSRVI  102 (487)
T ss_pred             CcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecC---CeEEEccCCcCcEEEeccccHHH
Confidence            468888998866655665553 479999988777666443 3455777777654   56999999999999999877778


Q ss_pred             eeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcC
Q 013274          183 SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVK  262 (446)
Q Consensus       183 ~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (446)
                      ++.+.+|+.+|..+.|+|.+..+|++|+.|+.+++||+.+...  .+                                 
T Consensus       103 LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v--~~---------------------------------  147 (487)
T KOG0310|consen  103 LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV--QA---------------------------------  147 (487)
T ss_pred             HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE--EE---------------------------------
Confidence            8999999999999999999998999999999999999876421  00                                 


Q ss_pred             CCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCC-CEEEEeecCCcEEEEecCcC
Q 013274          263 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVESG  341 (446)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~sgs~D~~i~lWd~~~~  341 (446)
                                                               ...+|.+.|+|.+|+|.. ..++|||-||+||+||+.+.
T Consensus       148 -----------------------------------------~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~  186 (487)
T KOG0310|consen  148 -----------------------------------------ELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL  186 (487)
T ss_pred             -----------------------------------------EecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccC
Confidence                                                     124789999999999964 58999999999999999875


Q ss_pred             ceeeeeeeEEEeecCCC-eEEEEcCCCcEEEEeCCCceEEEEeecCceEEE-ecccccceEEEEEcCCCCEEEEeeCCCc
Q 013274          342 RNTLVNFETVRLQTSKP-IQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLT-FRGHYEYVNCCCFSSQDQELYTGGNDRQ  419 (446)
Q Consensus       342 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-l~gH~~~v~~~~fSpd~~~lvtgs~D~~  419 (446)
                      ......     +..+.+ -.+.+-|.+.+++++++..+++||+.+|..+.. +..|.+.|+|+++..|++.|+|||-|+.
T Consensus       187 ~~~v~e-----lnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~  261 (487)
T KOG0310|consen  187 TSRVVE-----LNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH  261 (487)
T ss_pred             CceeEE-----ecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccc
Confidence            432222     233333 346677888999999999999999997765544 4449999999999999999999999999


Q ss_pred             EEEeCCC
Q 013274          420 ILVWCPS  426 (446)
Q Consensus       420 v~vW~~~  426 (446)
                      |+|++..
T Consensus       262 VKVfd~t  268 (487)
T KOG0310|consen  262 VKVFDTT  268 (487)
T ss_pred             eEEEEcc
Confidence            9999955

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=7.1e-25  Score=208.31  Aligned_cols=272  Identities=19%  Similarity=0.262  Sum_probs=208.5

Q ss_pred             EEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeE
Q 013274           49 LQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYV  128 (446)
Q Consensus        49 l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i  128 (446)
                      |.|+.  .+.|+.| ....|.+|+..++...             .+    ..-+...|+++.+.+ +|++|+.|-.+|+|
T Consensus       183 ldWss--~n~laVa-lg~~vylW~~~s~~v~-------------~l----~~~~~~~vtSv~ws~-~G~~LavG~~~g~v  241 (484)
T KOG0305|consen  183 LDWSS--ANVLAVA-LGQSVYLWSASSGSVT-------------EL----CSFGEELVTSVKWSP-DGSHLAVGTSDGTV  241 (484)
T ss_pred             hhccc--CCeEEEE-ecceEEEEecCCCceE-------------Ee----EecCCCceEEEEECC-CCCEEEEeecCCeE
Confidence            45652  3345444 6678999998765421             01    012267899999987 88999999999999


Q ss_pred             EEEECCCCeeeEEEec--CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeee-eeCCCCCeEEEEEecCCCeE
Q 013274          129 KVWDTNCTRVVMNFKM--PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT-LSGHRDGIMTVEWSTSSEWI  205 (446)
Q Consensus       129 ~iWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~-l~~h~~~v~sv~~s~~~~~~  205 (446)
                      .|||..+.+.++.+..  .+.+-++++.     ...+.+|+.|+.|..+|++....... +.+|...|..+.|++++.. 
T Consensus       242 ~iwD~~~~k~~~~~~~~h~~rvg~laW~-----~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~-  315 (484)
T KOG0305|consen  242 QIWDVKEQKKTRTLRGSHASRVGSLAWN-----SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQ-  315 (484)
T ss_pred             EEEehhhccccccccCCcCceeEEEecc-----CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCe-
Confidence            9999988887776654  3445555554     35789999999999999998865544 8899999999999999875 


Q ss_pred             EEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceee
Q 013274          206 LVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIP  285 (446)
Q Consensus       206 l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (446)
                      +|||+.|+.+.|||.......                                                           
T Consensus       316 lASGgnDN~~~Iwd~~~~~p~-----------------------------------------------------------  336 (484)
T KOG0305|consen  316 LASGGNDNVVFIWDGLSPEPK-----------------------------------------------------------  336 (484)
T ss_pred             eccCCCccceEeccCCCcccc-----------------------------------------------------------
Confidence            899999999999997432110                                                           


Q ss_pred             cCCccccccCCCcccccccccccccCeEEEEEccC-CCEEEEe--ecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEE
Q 013274          286 AKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED-GMYLLSA--GSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLA  362 (446)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~d-g~~l~sg--s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~  362 (446)
                                       .....|.++|.+++|+|- ...||+|  +.|+.|++||..++....    . ....+.+..+.
T Consensus       337 -----------------~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~----~-vdtgsQVcsL~  394 (484)
T KOG0305|consen  337 -----------------FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARID----S-VDTGSQVCSLI  394 (484)
T ss_pred             -----------------EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEec----c-cccCCceeeEE
Confidence                             012468889999999995 4578876  579999999999875321    1 11134555677


Q ss_pred             EcCCCcEEEEeCC---CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC
Q 013274          363 TTQDPAVVFVPCM---TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH  428 (446)
Q Consensus       363 ~~~~~~~~~~~~~---~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~  428 (446)
                      .++...-+++..+   +.+.+|+.-+-+.+..+.||+.+|..+++||||..++||+.|.++++|+.-..
T Consensus       395 Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  395 WSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             EcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            7777655554432   47899999999999999999999999999999999999999999999987543

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.94  E-value=6.5e-25  Score=202.23  Aligned_cols=299  Identities=20%  Similarity=0.281  Sum_probs=209.9

Q ss_pred             eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (446)
Q Consensus        39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~  118 (446)
                      +++|+..|.+|++.|+ |..++|||-|-+|++||++.-..     .....+.     .+....|.  |.++.+++ .+++
T Consensus       163 l~hgtk~Vsal~~Dp~-GaR~~sGs~Dy~v~~wDf~gMda-----s~~~fr~-----l~P~E~h~--i~sl~ys~-Tg~~  228 (641)
T KOG0772|consen  163 LKHGTKIVSALAVDPS-GARFVSGSLDYTVKFWDFQGMDA-----SMRSFRQ-----LQPCETHQ--INSLQYSV-TGDQ  228 (641)
T ss_pred             ccCCceEEEEeeecCC-CceeeeccccceEEEEecccccc-----cchhhhc-----cCcccccc--cceeeecC-CCCe
Confidence            6789999999999975 66799999999999999874321     1111111     12334554  66777776 6667


Q ss_pred             EEEEeCCCeEEEEECCCCeeeEEEe----------cCCce---EEeeeccCCCCceEEEEeeCCCcEEEEeCCCCce-ee
Q 013274          119 FVTGSYDHYVKVWDTNCTRVVMNFK----------MPGKV---YRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI-SQ  184 (446)
Q Consensus       119 l~s~s~D~~i~iWd~~~~~~~~~~~----------~~~~~---~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~-~~  184 (446)
                      |+..+..-.++|+|-+..+......          ..||+   .+.+|+|+.  ...+++++.|+++++||++..+. ..
T Consensus       229 iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~--k~~FlT~s~DgtlRiWdv~~~k~q~q  306 (641)
T KOG0772|consen  229 ILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDN--KEEFLTCSYDGTLRIWDVNNTKSQLQ  306 (641)
T ss_pred             EEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCc--ccceEEecCCCcEEEEecCCchhhee
Confidence            7666667789999976544433322          13444   445566653  35788999999999999987643 22


Q ss_pred             eee-----CCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCC
Q 013274          185 TLS-----GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNS  259 (446)
Q Consensus       185 ~l~-----~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (446)
                      .++     +-.-++++.+|+|++++ +|+|+.||.|.+||.++...-..+                              
T Consensus       307 Vik~k~~~g~Rv~~tsC~~nrdg~~-iAagc~DGSIQ~W~~~~~~v~p~~------------------------------  355 (641)
T KOG0772|consen  307 VIKTKPAGGKRVPVTSCAWNRDGKL-IAAGCLDGSIQIWDKGSRTVRPVM------------------------------  355 (641)
T ss_pred             EEeeccCCCcccCceeeecCCCcch-hhhcccCCceeeeecCCcccccce------------------------------
Confidence            222     33446899999999997 799999999999997542110000                              


Q ss_pred             CcCCCCccccccCCCceeecccceeecCCccccccCCCccccccccccccc--CeEEEEEccCCCEEEEeecCCcEEEEe
Q 013274          260 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYG--AVTGLKVTEDGMYLLSAGSDSRIRLWD  337 (446)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~fs~dg~~l~sgs~D~~i~lWd  337 (446)
                                                                 ....+|..  .|++|+||+||++|+|-|.|+++|+||
T Consensus       356 -------------------------------------------~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWD  392 (641)
T KOG0772|consen  356 -------------------------------------------KVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWD  392 (641)
T ss_pred             -------------------------------------------EeeeccCCCCceeEEEeccccchhhhccCCCceeeee
Confidence                                                       00124555  799999999999999999999999999


Q ss_pred             cCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-------CceEEEEeecCceEEEecccccceEEEEEcCCCCE
Q 013274          338 VESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-------TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQE  410 (446)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~  410 (446)
                      +..-+..+.....+ .........+|+|+..+++.+..       ..+.++|-.+.+.+..+.--+..|..+.|+|-=+.
T Consensus       393 Lrq~kkpL~~~tgL-~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQ  471 (641)
T KOG0772|consen  393 LRQFKKPLNVRTGL-PTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQ  471 (641)
T ss_pred             ccccccchhhhcCC-CccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhh
Confidence            98754332211111 11223446789999888887643       13667777777888777777889999999999777


Q ss_pred             EEEeeCCCcEEEe-CCCCC
Q 013274          411 LYTGGNDRQILVW-CPSRH  428 (446)
Q Consensus       411 lvtgs~D~~v~vW-~~~~~  428 (446)
                      |..|+.||+++|+ +++.+
T Consensus       472 i~~gsgdG~~~vyYdp~~S  490 (641)
T KOG0772|consen  472 IFAGSGDGTAHVYYDPNES  490 (641)
T ss_pred             eeeecCCCceEEEECcccc
Confidence            7788889999988 77643

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.94  E-value=2.1e-24  Score=209.22  Aligned_cols=365  Identities=20%  Similarity=0.286  Sum_probs=237.5

Q ss_pred             eeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCC
Q 013274           46 INSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYD  125 (446)
Q Consensus        46 v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D  125 (446)
                      |++|.=-++.=+-++-|+++|.++|||++++..            +     .++.++...|+++..+| --+.+|.|-.+
T Consensus       162 Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~------------v-----~~f~~~~s~IT~ieqsP-aLDVVaiG~~~  223 (910)
T KOG1539|consen  162 ITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKV------------V-----YTFQEFFSRITAIEQSP-ALDVVAIGLEN  223 (910)
T ss_pred             eeeEecchhheeeEEEeecCCcEEEEEeccCcE------------E-----EEecccccceeEeccCC-cceEEEEeccC
Confidence            777754222334588999999999999987652            1     22356778899887777 45789999999


Q ss_pred             CeEEEEECCCCeeeEEEecC-CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeee-CCCCCeEEEEEecCCC
Q 013274          126 HYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS-GHRDGIMTVEWSTSSE  203 (446)
Q Consensus       126 ~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~-~h~~~v~sv~~s~~~~  203 (446)
                      |+|.++++..++.+..|+.. |.+..++|..++  ..++|+|+..|.+.+||++..+++..+. .|.+.|....|.|..+
T Consensus       224 G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG--~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep  301 (910)
T KOG1539|consen  224 GTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDG--NPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEP  301 (910)
T ss_pred             ceEEEEEcccCcEEEEEEccccceeEEEeccCC--CeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCc
Confidence            99999999999999999986 889888887654  4689999999999999999998887776 7999999999998766


Q ss_pred             eEEEEeeCCCcEEEEEccCCc----eeEEeecccccc----------------cCCCcccccce---eecccccc-----
Q 013274          204 WILVTGGCDGAIRFWDIRRAG----CFRVLDQSQSQL----------------GRRPPLLKRKV---SISKSLSA-----  255 (446)
Q Consensus       204 ~~l~S~s~Dg~I~iWd~~~~~----~~~~~~~~~~~~----------------~~~~~~~~~~~---~~~~~~~~-----  255 (446)
                       +++|++.|+.+++|=..++.    .+++-..+..+.                +..........   .....+..     
T Consensus       302 -Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~  380 (910)
T KOG1539|consen  302 -VLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKK  380 (910)
T ss_pred             -eEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccc
Confidence             78999999999999544221    111111110000                00000000000   00000000     


Q ss_pred             -------C------CCCCc------------------C------------CC------Cccc----cccCCCceeecccc
Q 013274          256 -------G------QNSSV------------------K------------PR------APQK----RSANGNGVRQSSVG  282 (446)
Q Consensus       256 -------~------~~~~~------------------~------------~~------~~~~----~~~~~~~~~~~~~~  282 (446)
                             .      .....                  +            .+      ...+    ...+...+..+..|
T Consensus       381 ~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG  460 (910)
T KOG1539|consen  381 RAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG  460 (910)
T ss_pred             ccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccC
Confidence                   0      00000                  0            00      0000    00001112223332


Q ss_pred             eeec----CCcccccc-CCCc-ccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecC
Q 013274          283 RIPA----KGSVRQRL-HPGM-LSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTS  356 (446)
Q Consensus       283 ~~~~----~~~~~~~~-~~~~-~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~  356 (446)
                      +...    .|.+.... ..+. ........+|.++|++|+...-++.++|++.+|-+++||+.+..    ....++.. .
T Consensus       461 NF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~----l~~~l~l~-~  535 (910)
T KOG1539|consen  461 NFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV----LKKSLRLG-S  535 (910)
T ss_pred             ceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc----eeeeeccC-C
Confidence            2211    11111100 0000 01111235899999999999999999999999999999998753    11222221 2


Q ss_pred             CCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC-CCCCcC
Q 013274          357 KPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH-ISDGVD  434 (446)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~-~~~~~~  434 (446)
                      ....+.......+++.+++ ..++++|+-+.+..+.|.||.+.|++++|||||+||++++.|++||+||+.++ ..|++.
T Consensus       536 ~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~  615 (910)
T KOG1539|consen  536 SITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL  615 (910)
T ss_pred             CcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe
Confidence            2333444455555556555 57899999999999999999999999999999999999999999999999865 466655


Q ss_pred             CC
Q 013274          435 AG  436 (446)
Q Consensus       435 ~~  436 (446)
                      ..
T Consensus       616 vd  617 (910)
T KOG1539|consen  616 VD  617 (910)
T ss_pred             cC
Confidence            44

>PTZ00420 coronin; Provisional

Probab=99.94  E-value=2.2e-24  Score=213.08  Aligned_cols=228  Identities=17%  Similarity=0.241  Sum_probs=165.6

Q ss_pred             eeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCe----
Q 013274           62 GASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR----  137 (446)
Q Consensus        62 ~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~----  137 (446)
                      |+.++.|++|+..+..            .+     ....+|...|.++.|+|.++.+|+|||.|++|+|||+.++.    
T Consensus        50 GG~~gvI~L~~~~r~~------------~v-----~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~  112 (568)
T PTZ00420         50 GGLIGAIRLENQMRKP------------PV-----IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK  112 (568)
T ss_pred             CCceeEEEeeecCCCc------------eE-----EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc
Confidence            5678888888864321            11     12358999999999998668899999999999999997542    


Q ss_pred             ----eeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCC
Q 013274          138 ----VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCD  212 (446)
Q Consensus       138 ----~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~D  212 (446)
                          ++..+. +.+.+..++|+|..  ..++++++.|+.|++||++++.....+. |...|.+++|+|++.. |++++.|
T Consensus       113 ~i~~p~~~L~gH~~~V~sVaf~P~g--~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~l-Lat~s~D  188 (568)
T PTZ00420        113 EIKDPQCILKGHKKKISIIDWNPMN--YYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNL-LSGTCVG  188 (568)
T ss_pred             ccccceEEeecCCCcEEEEEECCCC--CeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCE-EEEEecC
Confidence                112222 34567888888853  3467899999999999999998777775 6688999999999984 7888999


Q ss_pred             CcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCcccc
Q 013274          213 GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQ  292 (446)
Q Consensus       213 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (446)
                      ++|+|||++++..+..+.                                                              
T Consensus       189 ~~IrIwD~Rsg~~i~tl~--------------------------------------------------------------  206 (568)
T PTZ00420        189 KHMHIIDPRKQEIASSFH--------------------------------------------------------------  206 (568)
T ss_pred             CEEEEEECCCCcEEEEEe--------------------------------------------------------------
Confidence            999999999876543332                                                              


Q ss_pred             ccCCCcccccccccccccC-----eEEEEEccCCCEEEEeecCC----cEEEEecCcCceeeeeeeEEEeecCCCeEEEE
Q 013274          293 RLHPGMLSSQDRATAHYGA-----VTGLKVTEDGMYLLSAGSDS----RIRLWDVESGRNTLVNFETVRLQTSKPIQLAT  363 (446)
Q Consensus       293 ~~~~~~~~~~~~~~~h~~~-----v~~l~fs~dg~~l~sgs~D~----~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (446)
                                    +|.+.     +....|++++.+|+|+|.|+    +|+|||+.+....+..                
T Consensus       207 --------------gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~----------------  256 (568)
T PTZ00420        207 --------------IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVT----------------  256 (568)
T ss_pred             --------------cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEE----------------
Confidence                          22222     33345778999999988774    7999998853211110                


Q ss_pred             cCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC
Q 013274          364 TQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH  428 (446)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~  428 (446)
                                                ..+..+.+.+.....++++.++++|+.|++|++|++...
T Consensus       257 --------------------------~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~  295 (568)
T PTZ00420        257 --------------------------MSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG  295 (568)
T ss_pred             --------------------------EEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence                                      011223444455555677999999999999999988644

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.2e-25  Score=212.42  Aligned_cols=252  Identities=27%  Similarity=0.414  Sum_probs=193.3

Q ss_pred             CCcccee---EEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274           41 PHKGSIN---SLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (446)
Q Consensus        41 ~H~~~v~---~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~  117 (446)
                      .|-..|+   +++.+.+++++|.|||.||.|++|+..........      +.     ....+.|..-|..++... +++
T Consensus        19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~------~~-----~asme~HsDWVNDiiL~~-~~~   86 (735)
T KOG0308|consen   19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPST------PY-----IASMEHHSDWVNDIILCG-NGK   86 (735)
T ss_pred             hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCccc------ch-----hhhhhhhHhHHhhHHhhc-CCC
Confidence            4556677   78888888999999999999999998654321100      00     112246888888776654 677


Q ss_pred             EEEEEeCCCeEEEEECCCCe--eeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc--ee--------e
Q 013274          118 LFVTGSYDHYVKVWDTNCTR--VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA--IS--------Q  184 (446)
Q Consensus       118 ~l~s~s~D~~i~iWd~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~--~~--------~  184 (446)
                      .|+|+|.|.+|++|+...+.  +..++. +..-+.+++..  ..+..++|+|+.|+.|++||++++.  .+        .
T Consensus        87 tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~--ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~  164 (735)
T KOG0308|consen   87 TLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYI--AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVN  164 (735)
T ss_pred             ceEEecCCceEEEeecccCcchhHhhhhcccchheeeeec--ccCceeEEecCCCccEEEEEccCcchhhhhhccccccc
Confidence            99999999999999987652  333332 23335555542  3456799999999999999999872  22        2


Q ss_pred             eee-CCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCC
Q 013274          185 TLS-GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKP  263 (446)
Q Consensus       185 ~l~-~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (446)
                      .+. ||...|.+++.++.+. ++++|+..+.+++||.|+.+.+                                     
T Consensus       165 sl~sG~k~siYSLA~N~t~t-~ivsGgtek~lr~wDprt~~ki-------------------------------------  206 (735)
T KOG0308|consen  165 SLGSGPKDSIYSLAMNQTGT-IIVSGGTEKDLRLWDPRTCKKI-------------------------------------  206 (735)
T ss_pred             cCCCCCccceeeeecCCcce-EEEecCcccceEEeccccccce-------------------------------------
Confidence            334 8899999999998874 7899999999999998864311                                     


Q ss_pred             CCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCce
Q 013274          264 RAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRN  343 (446)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~  343 (446)
                                                             .++.||...|+.|..++||+.++|+|+||+||+||+...++
T Consensus       207 ---------------------------------------mkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrC  247 (735)
T KOG0308|consen  207 ---------------------------------------MKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRC  247 (735)
T ss_pred             ---------------------------------------eeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccce
Confidence                                                   12358999999999999999999999999999999875332


Q ss_pred             eeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEe
Q 013274          344 TLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW  423 (446)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW  423 (446)
                                                                   +.++..|+..|+.+..+|+-+.+++|+.|+.|..=
T Consensus       248 ---------------------------------------------l~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~T  282 (735)
T KOG0308|consen  248 ---------------------------------------------LATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRT  282 (735)
T ss_pred             ---------------------------------------------eeeEEeccCceEEEeeCCCcceEEecCCCCcEEec
Confidence                                                         24567799999999999999999999999999888


Q ss_pred             CCCCC
Q 013274          424 CPSRH  428 (446)
Q Consensus       424 ~~~~~  428 (446)
                      ++..+
T Consensus       283 dl~n~  287 (735)
T KOG0308|consen  283 DLRNP  287 (735)
T ss_pred             ccCCc
Confidence            77654

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.93  E-value=2.2e-24  Score=205.34  Aligned_cols=281  Identities=19%  Similarity=0.299  Sum_probs=201.0

Q ss_pred             cceeEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeE-EEEe
Q 013274           34 NYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISS-AIWY  112 (446)
Q Consensus        34 ~~~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~-~~~~  112 (446)
                      .....+.+|+.-|..+++.+  +..++++|.||++++|+-......               +....++|++-|.. +++.
T Consensus         5 ~ls~~l~gH~~DVr~v~~~~--~~~i~s~sRd~t~~vw~~~~~~~l---------------~~~~~~~~~g~i~~~i~y~   67 (745)
T KOG0301|consen    5 KLSHELEGHKSDVRAVAVTD--GVCIISGSRDGTVKVWAKKGKQYL---------------ETHAFEGPKGFIANSICYA   67 (745)
T ss_pred             eeEEEeccCccchheeEecC--CeEEeecCCCCceeeeeccCcccc---------------cceecccCcceeeccceec
Confidence            34566889999999999863  457999999999999985433221               11234577777666 5555


Q ss_pred             ecCCcEEEEEeCCCeEEEEECCCCeeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCC
Q 013274          113 PVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD  191 (446)
Q Consensus       113 ~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~  191 (446)
                      +.+..++++|+.|++|.+|.+.+..++..+.. .+.+.+++.-.   +. .+++||.|.++++|-.  +++...+.+|+.
T Consensus        68 e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~---~~-~~iSgSWD~TakvW~~--~~l~~~l~gH~a  141 (745)
T KOG0301|consen   68 ESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE---DG-TLISGSWDSTAKVWRI--GELVYSLQGHTA  141 (745)
T ss_pred             cccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC---cC-ceEecccccceEEecc--hhhhcccCCcch
Confidence            55666899999999999999998888776652 33344443322   22 3899999999999975  455667999999


Q ss_pred             CeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCcccccc
Q 013274          192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSA  271 (446)
Q Consensus       192 ~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (446)
                      .|++|.+-|.+  .++|||.|.+||+|.-  +.+++                                            
T Consensus       142 sVWAv~~l~e~--~~vTgsaDKtIklWk~--~~~l~--------------------------------------------  173 (745)
T KOG0301|consen  142 SVWAVASLPEN--TYVTGSADKTIKLWKG--GTLLK--------------------------------------------  173 (745)
T ss_pred             heeeeeecCCC--cEEeccCcceeeeccC--Cchhh--------------------------------------------
Confidence            99999999887  4689999999999963  22111                                            


Q ss_pred             CCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEE
Q 013274          272 NGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV  351 (446)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~  351 (446)
                                                      ...+|.+.|+.|++-+++. ++|++.||.|++|++... ...    ..
T Consensus       174 --------------------------------tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~~ge-~l~----~~  215 (745)
T KOG0301|consen  174 --------------------------------TFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDLDGE-VLL----EM  215 (745)
T ss_pred             --------------------------------hhccchhheeeeEEecCCC-eEeecCCceEEEEeccCc-eee----ee
Confidence                                            1357999999999998765 569999999999999543 211    11


Q ss_pred             EeecCCCeEEEEcCCCcEEEE-eCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274          352 RLQTSKPIQLATTQDPAVVFV-PCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS  426 (446)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~  426 (446)
                      ..+.+....+....+...+++ +-+.++++|+..  ++...+.--+-.||++.+-++|. +|+|++||-||||..+
T Consensus       216 ~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  216 HGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD  288 (745)
T ss_pred             eccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence            122333444553344444444 445689999876  55555554455799999988874 6678899999999766

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=2.4e-22  Score=167.34  Aligned_cols=306  Identities=21%  Similarity=0.332  Sum_probs=216.1

Q ss_pred             CCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEE
Q 013274           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV  120 (446)
Q Consensus        41 ~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~  120 (446)
                      .-+..|.+++|.| .|.+-+.||..++.+|--.....+.....+.....++...  ....-|++.|+|.+|+| .+++++
T Consensus        30 ~dsqairav~fhp-~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~--kr~khhkgsiyc~~ws~-~gelia  105 (350)
T KOG0641|consen   30 EDSQAIRAVAFHP-AGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLC--KRNKHHKGSIYCTAWSP-CGELIA  105 (350)
T ss_pred             cchhheeeEEecC-CCceEEeccCCceEEEEccccccCcccccccccCCCeEEe--eeccccCccEEEEEecC-ccCeEE
Confidence            3457899999997 5678899999999998743322222111222222222221  22346899999999998 899999


Q ss_pred             EEeCCCeEEEEECCCCee-----eEEEe-cCCceEEeeeccCCC-CceEEEEee-CCCcEEEEeCCCCceeeeeeCCCCC
Q 013274          121 TGSYDHYVKVWDTNCTRV-----VMNFK-MPGKVYRTAMSPLAA-SHMLIAAGT-EDVQVRLCDIASGAISQTLSGHRDG  192 (446)
Q Consensus       121 s~s~D~~i~iWd~~~~~~-----~~~~~-~~~~~~~~~~~~~~~-~~~~lasgs-~d~~v~vwd~~~~~~~~~l~~h~~~  192 (446)
                      |||.|++|++--.+...+     ...+. +.|.+..++|..... +..+|++++ .|..|++-|...|...+.+.||.+-
T Consensus       106 tgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtgh  185 (350)
T KOG0641|consen  106 TGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGH  185 (350)
T ss_pred             ecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCccc
Confidence            999999999986653322     12233 345677777765432 344566654 5778888899999999999999999


Q ss_pred             eEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccC
Q 013274          193 IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSAN  272 (446)
Q Consensus       193 v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (446)
                      |.++- +-+ .++++||+.|.+||+||+|-..|++.++.....-|                                   
T Consensus       186 ilaly-swn-~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~g-----------------------------------  228 (350)
T KOG0641|consen  186 ILALY-SWN-GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGG-----------------------------------  228 (350)
T ss_pred             EEEEE-Eec-CcEEEccCCCceEEEEeeeccceeeeccCcccCCC-----------------------------------
Confidence            99874 223 36899999999999999998877766542211000                                   


Q ss_pred             CCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEE
Q 013274          273 GNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR  352 (446)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~  352 (446)
                                                        -..+.|.+++..|.|++|++|-.|....+||+..++..+ .|.   
T Consensus       229 ----------------------------------lessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq-~f~---  270 (350)
T KOG0641|consen  229 ----------------------------------LESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQ-RFH---  270 (350)
T ss_pred             ----------------------------------cccceeEEEEECCCcceeeeccCCCceEEEEeeCCceee-eeC---
Confidence                                              013468999999999999999999999999999887432 111   


Q ss_pred             eecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCce-----EEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274          353 LQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKT-----CLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS  426 (446)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~-----~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~  426 (446)
                      .+....-.+.|+|...+++..+- ..+++-|+. |.+     ......|++.+-.+.|+|..=-+++.|.|.++.+|.++
T Consensus       271 phsadir~vrfsp~a~yllt~syd~~ikltdlq-gdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  271 PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ-GDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             CCccceeEEEeCCCceEEEEecccceEEEeecc-cchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            12223445778887776665543 467777762 222     33456799999999999999889999999999999765

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.93  E-value=3.3e-25  Score=193.39  Aligned_cols=249  Identities=18%  Similarity=0.356  Sum_probs=186.4

Q ss_pred             CccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEec---------CCceEEeeeccCCCCceEEEEeeCCCc
Q 013274          101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM---------PGKVYRTAMSPLAASHMLIAAGTEDVQ  171 (446)
Q Consensus       101 gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~lasgs~d~~  171 (446)
                      |.+.-+-|..|+| |+++|+|||-||-|.+||..+|+..+.++.         ...+.++.|+.   +...+|+|+.||.
T Consensus       211 g~KSh~EcA~FSP-DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR---DsEMlAsGsqDGk  286 (508)
T KOG0275|consen  211 GQKSHVECARFSP-DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR---DSEMLASGSQDGK  286 (508)
T ss_pred             ccccchhheeeCC-CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc---cHHHhhccCcCCc
Confidence            5566676777776 999999999999999999998876654432         34466667665   4468999999999


Q ss_pred             EEEEeCCCCceeeeee-CCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeec
Q 013274          172 VRLCDIASGAISQTLS-GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSIS  250 (446)
Q Consensus       172 v~vwd~~~~~~~~~l~-~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (446)
                      |++|.+++|.+++.|. .|...|+++.|+.++.. +.|++.|.++|+--++.++|++.                      
T Consensus       287 IKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~Sq-iLS~sfD~tvRiHGlKSGK~LKE----------------------  343 (508)
T KOG0275|consen  287 IKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQ-ILSASFDQTVRIHGLKSGKCLKE----------------------  343 (508)
T ss_pred             EEEEEEecchHHHHhhhhhccCeeEEEEccCcch-hhcccccceEEEeccccchhHHH----------------------
Confidence            9999999999999987 89999999999999886 57999999999999988766432                      


Q ss_pred             cccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecC
Q 013274          251 KSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD  330 (446)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D  330 (446)
                                                                            ..+|.+.|+...|.+||.+++|++.|
T Consensus       344 ------------------------------------------------------frGHsSyvn~a~ft~dG~~iisaSsD  369 (508)
T KOG0275|consen  344 ------------------------------------------------------FRGHSSYVNEATFTDDGHHIISASSD  369 (508)
T ss_pred             ------------------------------------------------------hcCccccccceEEcCCCCeEEEecCC
Confidence                                                                  24788889999999999999999999


Q ss_pred             CcEEEEecCcCceeeeeeeEEEeecCC-CeEEE-EcCCCc-EEEEeCCCceEEEEeecCceEEEeccc---ccceEEEEE
Q 013274          331 SRIRLWDVESGRNTLVNFETVRLQTSK-PIQLA-TTQDPA-VVFVPCMTAVKAFDIWSGKTCLTFRGH---YEYVNCCCF  404 (446)
Q Consensus       331 ~~i~lWd~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~l~gH---~~~v~~~~f  404 (446)
                      |+|++|+.++..+.. .|....  ... ...+. +..++. +++..-.+.+.+-++ .|+.+++|..-   .+..-+++.
T Consensus       370 gtvkvW~~KtteC~~-Tfk~~~--~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~l  445 (508)
T KOG0275|consen  370 GTVKVWHGKTTECLS-TFKPLG--TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAIL  445 (508)
T ss_pred             ccEEEecCcchhhhh-hccCCC--CcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEe
Confidence            999999998865421 121111  111 11122 222222 222223344444444 56777777532   355677889


Q ss_pred             cCCCCEEEEeeCCCcEEEeCCCCCCCCCcC
Q 013274          405 SSQDQELYTGGNDRQILVWCPSRHISDGVD  434 (446)
Q Consensus       405 Spd~~~lvtgs~D~~v~vW~~~~~~~~~~~  434 (446)
                      ||-|.|++..++|+.+--+..-.+.+++++
T Consensus       446 SpkGewiYcigED~vlYCF~~~sG~LE~tl  475 (508)
T KOG0275|consen  446 SPKGEWIYCIGEDGVLYCFSVLSGKLERTL  475 (508)
T ss_pred             cCCCcEEEEEccCcEEEEEEeecCceeeee
Confidence            999999999999999999988777776654

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.93  E-value=1.5e-23  Score=185.85  Aligned_cols=257  Identities=16%  Similarity=0.257  Sum_probs=187.1

Q ss_pred             cccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeC
Q 013274           98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI  177 (446)
Q Consensus        98 ~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~  177 (446)
                      ++..|+..|.++..+| +..+++|||.|....+|++.++..+..+  +++-.++....+..+..+||+|..+|.|+||+.
T Consensus        59 tF~~H~~svFavsl~P-~~~l~aTGGgDD~AflW~~~~ge~~~el--tgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~  135 (399)
T KOG0296|consen   59 TFDKHTDSVFAVSLHP-NNNLVATGGGDDLAFLWDISTGEFAGEL--TGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV  135 (399)
T ss_pred             ehhhcCCceEEEEeCC-CCceEEecCCCceEEEEEccCCcceeEe--cCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence            4568999999999998 7889999999999999999999865444  444334443344446679999999999999999


Q ss_pred             CCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCC
Q 013274          178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQ  257 (446)
Q Consensus       178 ~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (446)
                      .++.....+..--+.+.-+.|+|-+. +|+.|+.||.+-+|.+.++...+.+                            
T Consensus       136 stg~~~~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~~~kv~----------------------------  186 (399)
T KOG0296|consen  136 STGGEQWKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQALCKVM----------------------------  186 (399)
T ss_pred             ccCceEEEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCcceeeEe----------------------------
Confidence            99998888876777889999999776 6889999999999998764333222                            


Q ss_pred             CCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEe
Q 013274          258 NSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWD  337 (446)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd  337 (446)
                                                                      .+|..++++=.|.|||+.+++|..||+|++||
T Consensus       187 ------------------------------------------------~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn  218 (399)
T KOG0296|consen  187 ------------------------------------------------SGHNSPCTCGEFIPDGKRILTGYDDGTIIVWN  218 (399)
T ss_pred             ------------------------------------------------cCCCCCcccccccCCCceEEEEecCceEEEEe
Confidence                                                            35777788888999999999999999999999


Q ss_pred             cCcCceeeeee-------eEEEee----------cCCCeE----------EEEc--------------------CCC---
Q 013274          338 VESGRNTLVNF-------ETVRLQ----------TSKPIQ----------LATT--------------------QDP---  367 (446)
Q Consensus       338 ~~~~~~~~~~~-------~~~~~~----------~~~~~~----------~~~~--------------------~~~---  367 (446)
                      ++++++....-       ....+.          ...+..          .+..                    +..   
T Consensus       219 ~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~l  298 (399)
T KOG0296|consen  219 PKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKL  298 (399)
T ss_pred             cCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccccc
Confidence            99886532211       000000          000000          0000                    000   


Q ss_pred             cEEEEeC-CCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCCCCCcCCC
Q 013274          368 AVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVDAG  436 (446)
Q Consensus       368 ~~~~~~~-~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~~~~~~~~  436 (446)
                      .+.+.+. .+.+.+||+.+.++.+.+ -|...|..+.|-+ ..+|+|++.||+|+.||..++.+....-|
T Consensus       299 pL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~G  366 (399)
T KOG0296|consen  299 PLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTG  366 (399)
T ss_pred             chhhcccccceEEEEecccchhheec-cCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEec
Confidence            0011111 236788988776654444 4888899999998 78999999999999999998766554444

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.93  E-value=1.2e-24  Score=183.49  Aligned_cols=203  Identities=20%  Similarity=0.366  Sum_probs=167.1

Q ss_pred             CCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEE
Q 013274           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV  120 (446)
Q Consensus        41 ~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~  120 (446)
                      .|+--|.+++|+. |.++|+||+.++-+||+|++.....                ..+..||.+.|..+.|... .+.++
T Consensus        98 ~hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~Ap----------------p~E~~ghtg~Ir~v~wc~e-D~~iL  159 (334)
T KOG0278|consen   98 EHKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAP----------------PKEISGHTGGIRTVLWCHE-DKCIL  159 (334)
T ss_pred             hhhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCC----------------chhhcCCCCcceeEEEecc-CceEE
Confidence            6888899999985 6788999999999999999865432                1234689999999999864 45778


Q ss_pred             EEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEec
Q 013274          121 TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWST  200 (446)
Q Consensus       121 s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~  200 (446)
                      |+++|++||+||..+++.+..+..+.++.++.+++++.   + ++-...+.|+.||.++-.+++.++ -...|.+.+++|
T Consensus       160 SSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~---i-lTia~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P  234 (334)
T KOG0278|consen  160 SSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGR---I-LTIAYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHP  234 (334)
T ss_pred             eeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCC---E-EEEecCceeEEeccccccceeecc-CccccccccccC
Confidence            88999999999999999999999999999988887543   3 344456789999999988887765 346789999999


Q ss_pred             CCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecc
Q 013274          201 SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSS  280 (446)
Q Consensus       201 ~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (446)
                      +.. ++++|++|..++.||..++..+..+                                                   
T Consensus       235 ~k~-~fVaGged~~~~kfDy~TgeEi~~~---------------------------------------------------  262 (334)
T KOG0278|consen  235 KKE-FFVAGGEDFKVYKFDYNTGEEIGSY---------------------------------------------------  262 (334)
T ss_pred             CCc-eEEecCcceEEEEEeccCCceeeec---------------------------------------------------
Confidence            875 6899999999999998876432110                                                   


Q ss_pred             cceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCc
Q 013274          281 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR  342 (446)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~  342 (446)
                                              ..+|.++|.||.|+|||...++||.||+||||....++
T Consensus       263 ------------------------nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  263 ------------------------NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             ------------------------ccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence                                    25799999999999999999999999999999876543

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.93  E-value=4e-24  Score=182.10  Aligned_cols=254  Identities=20%  Similarity=0.349  Sum_probs=168.2

Q ss_pred             eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (446)
Q Consensus        39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~  118 (446)
                      ..||+|.|+|+..+ .+.+.|+|||.|.+++|||+++++..-            ..      .-...|..+.|+. ++.+
T Consensus        48 y~GHtGavW~~Did-~~s~~liTGSAD~t~kLWDv~tGk~la------------~~------k~~~~Vk~~~F~~-~gn~  107 (327)
T KOG0643|consen   48 YDGHTGAVWCCDID-WDSKHLITGSADQTAKLWDVETGKQLA------------TW------KTNSPVKRVDFSF-GGNL  107 (327)
T ss_pred             ecCCCceEEEEEec-CCcceeeeccccceeEEEEcCCCcEEE------------Ee------ecCCeeEEEeecc-CCcE
Confidence            56999999999997 467899999999999999999886421            10      1223566667765 5555


Q ss_pred             EEEEeC-----CCeEEEEECC-------CCeeeEEEecC-CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC-ceee
Q 013274          119 FVTGSY-----DHYVKVWDTN-------CTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AISQ  184 (446)
Q Consensus       119 l~s~s~-----D~~i~iWd~~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~-~~~~  184 (446)
                      ++.+.+     -+.|.++|+.       ...+...++.+ ..+..+.+.+.   ...|++|..||.|.+||+++| ..+.
T Consensus       108 ~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l---~~~ii~Ghe~G~is~~da~~g~~~v~  184 (327)
T KOG0643|consen  108 ILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPL---GETIIAGHEDGSISIYDARTGKELVD  184 (327)
T ss_pred             EEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeeccc---CCEEEEecCCCcEEEEEcccCceeee
Confidence            554433     4789999987       34455555544 34555666664   357899999999999999998 4566


Q ss_pred             eeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccC-CCcccccceeeccccccCCCCCcCC
Q 013274          185 TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGR-RPPLLKRKVSISKSLSAGQNSSVKP  263 (446)
Q Consensus       185 ~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  263 (446)
                      ...-|...|+.+.|+|+..+ ++|+|.|.+-++||.++..+++.+....+.... ..|... .+.+.....+..      
T Consensus       185 s~~~h~~~Ind~q~s~d~T~-FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d-~VilgGGqeA~d------  256 (327)
T KOG0643|consen  185 SDEEHSSKINDLQFSRDRTY-FITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLD-HVILGGGQEAMD------  256 (327)
T ss_pred             chhhhccccccccccCCcce-EEecccCccceeeeccceeeEEEeeecccccceecccccc-eEEecCCceeee------
Confidence            77889999999999999875 799999999999999998888877544332111 001100 000000000000      


Q ss_pred             CCccccccCCCceeecccceeecCCccccccCCCc-ccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecC
Q 013274          264 RAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGM-LSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVE  339 (446)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~  339 (446)
                                  +....    ...+....+..... -....+.++|+|+|++|+|+|+|+..+||+.||.||+.-+.
T Consensus       257 ------------VTTT~----~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  257 ------------VTTTS----TRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             ------------eeeec----ccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence                        00000    00000000000000 01123568999999999999999999999999999998554

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.92  E-value=1.8e-23  Score=190.31  Aligned_cols=304  Identities=17%  Similarity=0.251  Sum_probs=208.6

Q ss_pred             EeCCCccceeEEEeecCCC-CEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC
Q 013274           38 IVSPHKGSINSLQVDLTEE-RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (446)
Q Consensus        38 ~~~~H~~~v~~l~~s~~~~-~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~  116 (446)
                      +.+.|.+.|++++|.|... +++|+|..-|+|-+||+.+... +       ...+++     +.+|...|.++.|+|.+.
T Consensus       181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~-d-------~d~v~~-----f~~hs~~Vs~l~F~P~n~  247 (498)
T KOG4328|consen  181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK-D-------KDGVYL-----FTPHSGPVSGLKFSPANT  247 (498)
T ss_pred             eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC-c-------cCceEE-----eccCCccccceEecCCCh
Confidence            4567899999999999887 7888999999999999953221 1       111222     358999999999999999


Q ss_pred             cEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCce-eeeeeCCCCCeEE
Q 013274          117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI-SQTLSGHRDGIMT  195 (446)
Q Consensus       117 ~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~-~~~l~~h~~~v~s  195 (446)
                      .++++.|+||+||+=|++.......+........++...+......++.+..=|...+||++++.- ...+.-|...|.+
T Consensus       248 s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~s  327 (498)
T KOG4328|consen  248 SQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITS  327 (498)
T ss_pred             hheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccce
Confidence            999999999999999998765332222211111111111111222344444445899999998753 5666778889999


Q ss_pred             EEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCc
Q 013274          196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNG  275 (446)
Q Consensus       196 v~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (446)
                      |+++|-..++|+|+|.|++.+|||+|+-..            +..|.                                 
T Consensus       328 v~~NP~~p~~laT~s~D~T~kIWD~R~l~~------------K~sp~---------------------------------  362 (498)
T KOG4328|consen  328 VALNPVCPWFLATASLDQTAKIWDLRQLRG------------KASPF---------------------------------  362 (498)
T ss_pred             eecCCCCchheeecccCcceeeeehhhhcC------------CCCcc---------------------------------
Confidence            999999999999999999999999985310            00000                                 


Q ss_pred             eeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecC---cCceeeeeee--E
Q 013274          276 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVE---SGRNTLVNFE--T  350 (446)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~---~~~~~~~~~~--~  350 (446)
                                                 -....|.-+|.+..|||.|-.|+|.+.|.+|||||..   ........+.  .
T Consensus       363 ---------------------------lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~  415 (498)
T KOG4328|consen  363 ---------------------------LSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNN  415 (498)
T ss_pred             ---------------------------eecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccC
Confidence                                       0123577789999999998889999999999999984   1111111111  0


Q ss_pred             EEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEeccccc-ce-EEEEEcCCCC-EEEEeeCCCcEEEeCCC
Q 013274          351 VRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYE-YV-NCCCFSSQDQ-ELYTGGNDRQILVWCPS  426 (446)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~-~v-~~~~fSpd~~-~lvtgs~D~~v~vW~~~  426 (446)
                      ...+.-.+..+++.|+..+++++.. ..+-++|-..++++..|.+-.. .| .-..|+|-+. +++-++.-|.|.||.-.
T Consensus       416 ~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  416 RTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             cccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence            1111223455778888888877644 5777888777777777665544 34 3457899877 55556667889888654

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.92  E-value=4e-24  Score=192.22  Aligned_cols=242  Identities=19%  Similarity=0.278  Sum_probs=181.2

Q ss_pred             EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (446)
Q Consensus        38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~  117 (446)
                      ++.|-.|.|+++.|.+ +++++++++.|+.+++||+.....                 ..++.||+..|+++.++- ...
T Consensus       214 tLaGs~g~it~~d~d~-~~~~~iAas~d~~~r~Wnvd~~r~-----------------~~TLsGHtdkVt~ak~~~-~~~  274 (459)
T KOG0288|consen  214 TLAGSLGNITSIDFDS-DNKHVIAASNDKNLRLWNVDSLRL-----------------RHTLSGHTDKVTAAKFKL-SHS  274 (459)
T ss_pred             hhhccCCCcceeeecC-CCceEEeecCCCceeeeeccchhh-----------------hhhhcccccceeeehhhc-ccc
Confidence            4556678899999986 578899999999999999976542                 234579999999998875 333


Q ss_pred             EEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEE
Q 013274          118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVE  197 (446)
Q Consensus       118 ~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~  197 (446)
                      .+++|+.|.+|++||+....+.+++-....++.+.+..     ..+++|..|++|++||++++.+....+.+. .|+++.
T Consensus       275 ~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~-----~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~  348 (459)
T KOG0288|consen  275 RVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSI-----SDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLD  348 (459)
T ss_pred             ceeeccccchhhhhhhhhhheeccccccccccceEecc-----eeeeecccccceEEEeccCCceeeEeecCc-ceeeEe
Confidence            59999999999999999888777665555555555542     358899999999999999999998888775 899999


Q ss_pred             EecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCcee
Q 013274          198 WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVR  277 (446)
Q Consensus       198 ~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (446)
                      .++++.. +.+++.|.++.+.|+|+......+.+....                                          
T Consensus       349 ls~~g~~-lLsssRDdtl~viDlRt~eI~~~~sA~g~k------------------------------------------  385 (459)
T KOG0288|consen  349 LSMDGLE-LLSSSRDDTLKVIDLRTKEIRQTFSAEGFK------------------------------------------  385 (459)
T ss_pred             eccCCeE-EeeecCCCceeeeecccccEEEEeeccccc------------------------------------------
Confidence            9999876 567799999999999986544443221110                                          


Q ss_pred             ecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCC
Q 013274          278 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK  357 (446)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~  357 (446)
                                                  .+|.  .+.+.|||++.|+++||.||.|+||++.+++...+    +......
T Consensus       386 ----------------------------~asD--wtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~----l~~s~s~  431 (459)
T KOG0288|consen  386 ----------------------------CASD--WTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKV----LSLSTSN  431 (459)
T ss_pred             ----------------------------cccc--cceeEECCCCceeeeccCCCcEEEEEccCceEEEE----eccCCCC
Confidence                                        1222  67789999999999999999999999999864321    1222222


Q ss_pred             --CeEEEEcCCCcEEEEeCC-CceEEE
Q 013274          358 --PIQLATTQDPAVVFVPCM-TAVKAF  381 (446)
Q Consensus       358 --~~~~~~~~~~~~~~~~~~-~~~~~~  381 (446)
                        ...+++.+.+..++++.. ..+.+|
T Consensus       432 ~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  432 AAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             cceEEEEEcCCCchhhcccCCcceEec
Confidence              345566666665555433 344544

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.92  E-value=4.7e-24  Score=194.27  Aligned_cols=228  Identities=23%  Similarity=0.399  Sum_probs=175.6

Q ss_pred             EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (446)
Q Consensus        38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~  117 (446)
                      .+.+|++.-++|+|++...-.|+||+.|++|.+||++......          ..+.......+|...|..+.|++.+.+
T Consensus       172 ~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~----------~~~~p~~~~~~h~~~VeDV~~h~~h~~  241 (422)
T KOG0264|consen  172 RLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKED----------KVVDPKTIFSGHEDVVEDVAWHPLHED  241 (422)
T ss_pred             EEEeecccccccccccccceeEeeccCCCcEEEEeccccccCC----------ccccceEEeecCCcceehhhccccchh
Confidence            4678999889999998777789999999999999997543210          001112334699999999999999999


Q ss_pred             EEEEEeCCCeEEEEECCCC--eeeEEE-ecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC-ceeeeeeCCCCCe
Q 013274          118 LFVTGSYDHYVKVWDTNCT--RVVMNF-KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AISQTLSGHRDGI  193 (446)
Q Consensus       118 ~l~s~s~D~~i~iWd~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~-~~~~~l~~h~~~v  193 (446)
                      +|+++++|+.+.|||+.+.  ++.... .+.+.+++++|.|..  ..+||+|+.|++|.+||+++- .++.++.+|.+.|
T Consensus       242 lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~--~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev  319 (422)
T KOG0264|consen  242 LFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFN--EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEV  319 (422)
T ss_pred             hheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCC--CceEEeccCCCcEEEeechhcccCceeccCCCcce
Confidence            9999999999999999853  222222 246678999999875  579999999999999999875 5788999999999


Q ss_pred             EEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCC
Q 013274          194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANG  273 (446)
Q Consensus       194 ~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (446)
                      ..|.|+|+...+|+|++.|+.+.+||+..-+.-++.     .-                  +                  
T Consensus       320 ~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~-----ed------------------a------------------  358 (422)
T KOG0264|consen  320 FQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSP-----ED------------------A------------------  358 (422)
T ss_pred             EEEEeCCCCCceeEecccCCcEEEEeccccccccCh-----hh------------------h------------------
Confidence            999999999999999999999999998643210000     00                  0                  


Q ss_pred             CceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCC-EEEEeecCCcEEEEecC
Q 013274          274 NGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM-YLLSAGSDSRIRLWDVE  339 (446)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~sgs~D~~i~lWd~~  339 (446)
                                           ..+.......-.||.+.|..+.|+|+.. .|+|.+.|+.+.||.+.
T Consensus       359 ---------------------~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  359 ---------------------EDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             ---------------------ccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence                                 0000000112358999999999999876 57888999999999876

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.8e-22  Score=175.89  Aligned_cols=242  Identities=18%  Similarity=0.247  Sum_probs=182.9

Q ss_pred             cccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEE-EecCCceEEeeeccCCCCceEEEEeeCCCcEEEEe
Q 013274           98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMN-FKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCD  176 (446)
Q Consensus        98 ~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd  176 (446)
                      .+..|.++++++++   ++.++||||.|-+|+|||+.....+.. +.+.+.+..+.|.+... ...|++|+.||.|.+|+
T Consensus        38 ~~~aH~~sitavAV---s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S-~shLlS~sdDG~i~iw~  113 (362)
T KOG0294|consen   38 AFSAHAGSITALAV---SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLS-KSHLLSGSDDGHIIIWR  113 (362)
T ss_pred             cccccccceeEEEe---cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcc-hhheeeecCCCcEEEEE
Confidence            45689999999988   467999999999999999987655433 33567788777776432 23688999999999999


Q ss_pred             CCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccC
Q 013274          177 IASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAG  256 (446)
Q Consensus       177 ~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (446)
                      ...-.++..+++|.+.|+.++.+|.++ +.+|.+.|+.+|+||+-.++.-....                          
T Consensus       114 ~~~W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a~v~~--------------------------  166 (362)
T KOG0294|consen  114 VGSWELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRVAFVLN--------------------------  166 (362)
T ss_pred             cCCeEEeeeecccccccceeEecCCCc-eEEEEcCCceeeeehhhcCccceeec--------------------------
Confidence            999999999999999999999999998 46799999999999997654211100                          


Q ss_pred             CCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEE
Q 013274          257 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW  336 (446)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lW  336 (446)
                                                                       ..|.  -+.|.|+|.|.+++.++.++ |-+|
T Consensus       167 -------------------------------------------------L~~~--at~v~w~~~Gd~F~v~~~~~-i~i~  194 (362)
T KOG0294|consen  167 -------------------------------------------------LKNK--ATLVSWSPQGDHFVVSGRNK-IDIY  194 (362)
T ss_pred             -------------------------------------------------cCCc--ceeeEEcCCCCEEEEEeccE-EEEE
Confidence                                                             0111  23388999999888777775 9999


Q ss_pred             ecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEE--cCCCCEEEE
Q 013274          337 DVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCF--SSQDQELYT  413 (446)
Q Consensus       337 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~f--Spd~~~lvt  413 (446)
                      .+.+.+.    +....  ....+..+..-++..++++.. ..+.+||-.+..+...|.+|+++|-++.+  .|++.+|+|
T Consensus       195 q~d~A~v----~~~i~--~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvT  268 (362)
T KOG0294|consen  195 QLDNASV----FREIE--NPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVT  268 (362)
T ss_pred             ecccHhH----hhhhh--ccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEE
Confidence            8876431    11110  111122333345566666655 46899999988999999999999999984  367899999


Q ss_pred             eeCCCcEEEeCCCCC
Q 013274          414 GGNDRQILVWCPSRH  428 (446)
Q Consensus       414 gs~D~~v~vW~~~~~  428 (446)
                      +|+||.|+||+.+..
T Consensus       269 aSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  269 ASSDGFIKVWDIDME  283 (362)
T ss_pred             eccCceEEEEEcccc
Confidence            999999999998754

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.92  E-value=1.5e-21  Score=183.04  Aligned_cols=278  Identities=16%  Similarity=0.111  Sum_probs=188.0

Q ss_pred             CEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEE-EEEeCCCeEEEEECCC
Q 013274           57 RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF-VTGSYDHYVKVWDTNC  135 (446)
Q Consensus        57 ~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l-~s~s~D~~i~iWd~~~  135 (446)
                      ++++|++.|++|++||+.++...            ...     .+|. .+.++.++| +++.+ ++++.|+.|++||+.+
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~------------~~~-----~~~~-~~~~l~~~~-dg~~l~~~~~~~~~v~~~d~~~   62 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVT------------RTF-----PVGQ-RPRGITLSK-DGKLLYVCASDSDTIQVIDLAT   62 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceE------------EEE-----ECCC-CCCceEECC-CCCEEEEEECCCCeEEEEECCC
Confidence            57899999999999998765321            011     1222 245667776 56554 6778899999999998


Q ss_pred             CeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCC-c
Q 013274          136 TRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDG-A  214 (446)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg-~  214 (446)
                      ++.+..+........+.+++..  ..+++++..++.|++||++++..+..+..+ ..+.++.|+|+++. +++++.++ .
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~g--~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~-l~~~~~~~~~  138 (300)
T TIGR03866        63 GEVIGTLPSGPDPELFALHPNG--KILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKI-VVNTSETTNM  138 (300)
T ss_pred             CcEEEeccCCCCccEEEECCCC--CEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCE-EEEEecCCCe
Confidence            8877666544444556666543  345566667899999999998877776532 34688999999986 55666554 5


Q ss_pred             EEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCcccccc
Q 013274          215 IRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRL  294 (446)
Q Consensus       215 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (446)
                      +.+||.+++.....+.                                                                
T Consensus       139 ~~~~d~~~~~~~~~~~----------------------------------------------------------------  154 (300)
T TIGR03866       139 AHFIDTKTYEIVDNVL----------------------------------------------------------------  154 (300)
T ss_pred             EEEEeCCCCeEEEEEE----------------------------------------------------------------
Confidence            6778876543221110                                                                


Q ss_pred             CCCcccccccccccccCeEEEEEccCCCEEE-EeecCCcEEEEecCcCceeeeeeeEE--Ee--ecCCCeEEEEcCCCcE
Q 013274          295 HPGMLSSQDRATAHYGAVTGLKVTEDGMYLL-SAGSDSRIRLWDVESGRNTLVNFETV--RL--QTSKPIQLATTQDPAV  369 (446)
Q Consensus       295 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~-sgs~D~~i~lWd~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~  369 (446)
                                   .......++|+|+|++|+ ++..|+.|++||+.+++.. ..+...  ..  ....+..+++++++..
T Consensus       155 -------------~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~s~dg~~  220 (300)
T TIGR03866       155 -------------VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVI-KKITFEIPGVHPEAVQPVGIKLTKDGKT  220 (300)
T ss_pred             -------------cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceee-eeeeecccccccccCCccceEECCCCCE
Confidence                         001245688999999875 5556999999999986431 111110  00  0112345778888887


Q ss_pred             EEEeC--CCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEe-eCCCcEEEeCCCCCC-CCCcCCC
Q 013274          370 VFVPC--MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTG-GNDRQILVWCPSRHI-SDGVDAG  436 (446)
Q Consensus       370 ~~~~~--~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtg-s~D~~v~vW~~~~~~-~~~~~~~  436 (446)
                      +++..  .+.+.+||+.+++....+. +...+.+++|+|++++|+++ +.++.|+||++.+.. ..++-.|
T Consensus       221 ~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~  290 (300)
T TIGR03866       221 AFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG  290 (300)
T ss_pred             EEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc
Confidence            66643  3579999998888766553 44578999999999999876 569999999998765 3444444

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.91  E-value=2.1e-23  Score=198.68  Aligned_cols=237  Identities=19%  Similarity=0.334  Sum_probs=180.5

Q ss_pred             cccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCc---eEE-eeeccCCCCceEEEEeeCCCcEE
Q 013274           98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK---VYR-TAMSPLAASHMLIAAGTEDVQVR  173 (446)
Q Consensus        98 ~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~lasgs~d~~v~  173 (446)
                      ...||+..|..+++.  ++..++++|+|+++++|+-...+.+......++   +.. +++.+  .+.-++++|+.|..|.
T Consensus         9 ~l~gH~~DVr~v~~~--~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e--~~~~~l~~g~~D~~i~   84 (745)
T KOG0301|consen    9 ELEGHKSDVRAVAVT--DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAE--SDKGRLVVGGMDTTII   84 (745)
T ss_pred             EeccCccchheeEec--CCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceecc--ccCcceEeecccceEE
Confidence            346999999887765  456899999999999999765555443222222   222 33333  2334688999999999


Q ss_pred             EEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeecccc
Q 013274          174 LCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSL  253 (446)
Q Consensus       174 vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (446)
                      +|.+.+..+..+|.||+..|.+++...++  .++|||+|.++++|.+....                             
T Consensus        85 v~~~~~~~P~~~LkgH~snVC~ls~~~~~--~~iSgSWD~TakvW~~~~l~-----------------------------  133 (745)
T KOG0301|consen   85 VFKLSQAEPLYTLKGHKSNVCSLSIGEDG--TLISGSWDSTAKVWRIGELV-----------------------------  133 (745)
T ss_pred             EEecCCCCchhhhhccccceeeeecCCcC--ceEecccccceEEecchhhh-----------------------------
Confidence            99999999999999999999999976554  37899999999999753210                             


Q ss_pred             ccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcE
Q 013274          254 SAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRI  333 (446)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i  333 (446)
                                                                       ....+|..+|.++++-|++ .++|||.|++|
T Consensus       134 -------------------------------------------------~~l~gH~asVWAv~~l~e~-~~vTgsaDKtI  163 (745)
T KOG0301|consen  134 -------------------------------------------------YSLQGHTASVWAVASLPEN-TYVTGSADKTI  163 (745)
T ss_pred             -------------------------------------------------cccCCcchheeeeeecCCC-cEEeccCccee
Confidence                                                             0135899999999999988 67799999999


Q ss_pred             EEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEE
Q 013274          334 RLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYT  413 (446)
Q Consensus       334 ~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvt  413 (446)
                      |+|.-.+.-      .++.-+....-.++.-++...+-++.+..++.|++ +++.+..+.||++.|.+++..++++.++|
T Consensus       164 klWk~~~~l------~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs  236 (745)
T KOG0301|consen  164 KLWKGGTLL------KTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVS  236 (745)
T ss_pred             eeccCCchh------hhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEE
Confidence            999764321      11111222222344555556665556678999999 89999999999999999998899999999


Q ss_pred             eeCCCcEEEeCCC
Q 013274          414 GGNDRQILVWCPS  426 (446)
Q Consensus       414 gs~D~~v~vW~~~  426 (446)
                      |++|+++|||+.+
T Consensus       237 ~gEDrtlriW~~~  249 (745)
T KOG0301|consen  237 TGEDRTLRIWKKD  249 (745)
T ss_pred             ecCCceEEEeecC
Confidence            9999999999876

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=3.1e-23  Score=199.71  Aligned_cols=287  Identities=18%  Similarity=0.304  Sum_probs=202.9

Q ss_pred             cceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEe
Q 013274           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS  123 (446)
Q Consensus        44 ~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s  123 (446)
                      +..++|..+++ -..|+.++. ...+||.++.....+        +..+-.  ...+.--.....+.|...+.+++||++
T Consensus        40 ~~~nAIs~nr~-~~qiv~AGr-s~lklyai~~~~~~~--------~~~~~~--k~kqn~~~S~~DVkW~~~~~NlIAT~s  107 (839)
T KOG0269|consen   40 AKANAISVNRD-INQIVVAGR-SLLKLYAINPNDFSE--------KCNHRF--KTKQNKFYSAADVKWGQLYSNLIATCS  107 (839)
T ss_pred             cccceEeecCC-cceeEEecc-cceeeEeeCcccCCc--------ceeeec--ccccceeeehhhcccccchhhhheeec
Confidence            55678888764 344555533 357777765432111        000000  000111123334567666778999999


Q ss_pred             CCCeEEEEECCC---CeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEe
Q 013274          124 YDHYVKVWDTNC---TRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS  199 (446)
Q Consensus       124 ~D~~i~iWd~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s  199 (446)
                      ..|.|.+||+..   .+.+..|. +...++.+.|++..+  .+|++|++|+.|++||++..+-..++.+....|..|.|+
T Consensus       108 ~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep--~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fs  185 (839)
T KOG0269|consen  108 TNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEP--NILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFS  185 (839)
T ss_pred             CCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCc--cEEEecCCCceEEEEeeecccccccccccchhhhceeec
Confidence            999999999976   33333332 334477888887655  589999999999999999998888888899999999999


Q ss_pred             cCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeec
Q 013274          200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQS  279 (446)
Q Consensus       200 ~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (446)
                      |...+.|+++...|.+++||+|.....                                                     
T Consensus       186 p~~~~~F~s~~dsG~lqlWDlRqp~r~-----------------------------------------------------  212 (839)
T KOG0269|consen  186 PGYGNKFASIHDSGYLQLWDLRQPDRC-----------------------------------------------------  212 (839)
T ss_pred             cCCCceEEEecCCceEEEeeccCchhH-----------------------------------------------------
Confidence            988888999999999999999863210                                                     


Q ss_pred             ccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeec-CCC
Q 013274          280 SVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT-SKP  358 (446)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~-~~~  358 (446)
                                            .....+|.|+|.++.|+|++.+|||||.|++|+|||+.+.+....    ...+. .+.
T Consensus       213 ----------------------~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~----~tInTiapv  266 (839)
T KOG0269|consen  213 ----------------------EKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPK----HTINTIAPV  266 (839)
T ss_pred             ----------------------HHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccce----eEEeeccee
Confidence                                  012358999999999999999999999999999999987543211    11111 233


Q ss_pred             eEEEEcCCCcEEEEe----CCCceEEEEeecCc-eEEEecccccceEEEEEcC-CCCEEEEeeCCCcEEEe
Q 013274          359 IQLATTQDPAVVFVP----CMTAVKAFDIWSGK-TCLTFRGHYEYVNCCCFSS-QDQELYTGGNDRQILVW  423 (446)
Q Consensus       359 ~~~~~~~~~~~~~~~----~~~~~~~~d~~~~~-~~~~l~gH~~~v~~~~fSp-d~~~lvtgs~D~~v~vW  423 (446)
                      ..+.+.|.....+..    ....|++||+...- +..+|..|+..++.++|-. |-..|-|||-|++|..-
T Consensus       267 ~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh  337 (839)
T KOG0269|consen  267 GRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQH  337 (839)
T ss_pred             eeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHh
Confidence            456666665443322    23589999997654 5689999999999999965 45668899999988654

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=9.4e-22  Score=170.49  Aligned_cols=286  Identities=16%  Similarity=0.215  Sum_probs=204.0

Q ss_pred             eeEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecC
Q 013274           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (446)
Q Consensus        36 ~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~  115 (446)
                      .++..+...+|.+|+|||....+++.||-|++||+|+++..-.+..               .....|.+.|.+++|+. +
T Consensus        20 ~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~---------------ka~~~~~~PvL~v~Wsd-d   83 (347)
T KOG0647|consen   20 YEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP---------------KAQQSHDGPVLDVCWSD-D   83 (347)
T ss_pred             eecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc---------------hhhhccCCCeEEEEEcc-C
Confidence            3556788899999999996667788999999999999976321111               11246889999999987 7


Q ss_pred             CcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEE
Q 013274          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT  195 (446)
Q Consensus       116 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~s  195 (446)
                      +..+++|+-|+.+++||+.+++....-.+.+.+..+.+.+-- ....|++||.|.+|+.||.+...++.++. -.+.|.+
T Consensus        84 gskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~-~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa  161 (347)
T KOG0647|consen   84 GSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGM-NYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYA  161 (347)
T ss_pred             CceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCC-CcceeEecccccceeecccCCCCeeeeee-ccceeee
Confidence            889999999999999999999876655566777666665432 24579999999999999999888777664 3355666


Q ss_pred             EEEecCCCeEEEEeeCCCcEEEEEccCCce-eEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCC
Q 013274          196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGC-FRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGN  274 (446)
Q Consensus       196 v~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (446)
                      +..-.  . +++.+..+..|.+|+|+++.. ++.++                                            
T Consensus       162 ~Dv~~--p-m~vVata~r~i~vynL~n~~te~k~~~--------------------------------------------  194 (347)
T KOG0647|consen  162 ADVLY--P-MAVVATAERHIAVYNLENPPTEFKRIE--------------------------------------------  194 (347)
T ss_pred             hhccC--c-eeEEEecCCcEEEEEcCCCcchhhhhc--------------------------------------------
Confidence            55432  2 567788889999999976421 00000                                            


Q ss_pred             ceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCcee-eeeeeEEEe
Q 013274          275 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNT-LVNFETVRL  353 (446)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~-~~~~~~~~~  353 (446)
                          +                           .-.-.++||+...|....+-|+-.|++-+..+..+.+. ...|...+.
T Consensus       195 ----S---------------------------pLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~  243 (347)
T KOG0647|consen  195 ----S---------------------------PLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRS  243 (347)
T ss_pred             ----C---------------------------cccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEecc
Confidence                0                           00112788998888877788999999999988875321 111222221


Q ss_pred             ec-C-----CCeEEEEcCCCcEEEE-eCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEE-eeCC
Q 013274          354 QT-S-----KPIQLATTQDPAVVFV-PCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYT-GGND  417 (446)
Q Consensus       354 ~~-~-----~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvt-gs~D  417 (446)
                      .. .     .+..++|.|--..++. ++++....||-..+..+++...|..+|+|++|+.+|.++|- .|.|
T Consensus       244 ~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD  315 (347)
T KOG0647|consen  244 TNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD  315 (347)
T ss_pred             CCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence            11 0     1224667775444444 45567889998888888999999999999999999999884 3444

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=4.3e-23  Score=195.22  Aligned_cols=296  Identities=19%  Similarity=0.332  Sum_probs=204.3

Q ss_pred             eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (446)
Q Consensus        39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~  118 (446)
                      +..|+.=|+.+... .+++.|+|+|.|-+|++||...+-..               -......|+.-|.|++....+..+
T Consensus        69 me~HsDWVNDiiL~-~~~~tlIS~SsDtTVK~W~~~~~~~~---------------c~stir~H~DYVkcla~~ak~~~l  132 (735)
T KOG0308|consen   69 MEHHSDWVNDIILC-GNGKTLISASSDTTVKVWNAHKDNTF---------------CMSTIRTHKDYVKCLAYIAKNNEL  132 (735)
T ss_pred             hhhhHhHHhhHHhh-cCCCceEEecCCceEEEeecccCcch---------------hHhhhhcccchheeeeecccCcee
Confidence            45688889998886 46778999999999999998654210               012234699999999885567889


Q ss_pred             EEEEeCCCeEEEEECCCCe--eeEEEe------cC-C---ceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeee
Q 013274          119 FVTGSYDHYVKVWDTNCTR--VVMNFK------MP-G---KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL  186 (446)
Q Consensus       119 l~s~s~D~~i~iWd~~~~~--~~~~~~------~~-~---~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l  186 (446)
                      +||||.|+.|++||++++.  .+..+.      .. |   .+|+++..+   ...+|++|+..+.+++||.++++.+..|
T Consensus       133 vaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~---t~t~ivsGgtek~lr~wDprt~~kimkL  209 (735)
T KOG0308|consen  133 VASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ---TGTIIVSGGTEKDLRLWDPRTCKKIMKL  209 (735)
T ss_pred             EEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC---cceEEEecCcccceEEeccccccceeee
Confidence            9999999999999999773  333222      11 2   366666655   3468999999999999999999999999


Q ss_pred             eCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCc
Q 013274          187 SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAP  266 (446)
Q Consensus       187 ~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (446)
                      +||++.|..+..+++|.. ++|+|.||+||+||+..+.|+.++                                     
T Consensus       210 rGHTdNVr~ll~~dDGt~-~ls~sSDgtIrlWdLgqQrCl~T~-------------------------------------  251 (735)
T KOG0308|consen  210 RGHTDNVRVLLVNDDGTR-LLSASSDGTIRLWDLGQQRCLATY-------------------------------------  251 (735)
T ss_pred             eccccceEEEEEcCCCCe-EeecCCCceEEeeeccccceeeeE-------------------------------------
Confidence            999999999999999986 689999999999999988876554                                     


Q ss_pred             cccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeee
Q 013274          267 QKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLV  346 (446)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~  346 (446)
                                                             ..|...|.++..+|+=+++.+|+.|+.|..=|+.+.+....
T Consensus       252 ---------------------------------------~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tl  292 (735)
T KOG0308|consen  252 ---------------------------------------IVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTL  292 (735)
T ss_pred             ---------------------------------------EeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheE
Confidence                                                   24555588999999889999999999999888887321111


Q ss_pred             eeeEEEeecCCC-eEEEEcCCC-cEEEEeCCCceEEEEeec-------Cc------------------eEEEecccccce
Q 013274          347 NFETVRLQTSKP-IQLATTQDP-AVVFVPCMTAVKAFDIWS-------GK------------------TCLTFRGHYEYV  399 (446)
Q Consensus       347 ~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~d~~~-------~~------------------~~~~l~gH~~~v  399 (446)
                      .++     ...+ ..+...... .+.+......++-|.+.-       ++                  ......|-. .|
T Consensus       293 ick-----~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~-ai  366 (735)
T KOG0308|consen  293 ICK-----EDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGA-AI  366 (735)
T ss_pred             eec-----CCCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCch-hh
Confidence            111     1111 111111111 111112223344443210       00                  001112211 23


Q ss_pred             EEEEEcCCCCEEEEeeCCCcEEEeCCCCC-CCCCcCCC
Q 013274          400 NCCCFSSQDQELYTGGNDRQILVWCPSRH-ISDGVDAG  436 (446)
Q Consensus       400 ~~~~fSpd~~~lvtgs~D~~v~vW~~~~~-~~~~~~~~  436 (446)
                      .-.++-.|-|.++|-..+|++.+||+=.- +++.++.+
T Consensus       367 ~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~gk~  404 (735)
T KOG0308|consen  367 KKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDFGKV  404 (735)
T ss_pred             hhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhcccc
Confidence            44556678899999999999999998644 35555543

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.91  E-value=4e-23  Score=189.85  Aligned_cols=281  Identities=22%  Similarity=0.345  Sum_probs=189.9

Q ss_pred             CCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEE
Q 013274           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV  120 (446)
Q Consensus        41 ~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~  120 (446)
                      .|-.-|-++..|. ..+++-||+. |.|+|||+.......         ++..+..   .....-+.++..+| |+..|+
T Consensus       417 ~HGEvVcAvtIS~-~trhVyTgGk-gcVKVWdis~pg~k~---------PvsqLdc---l~rdnyiRSckL~p-dgrtLi  481 (705)
T KOG0639|consen  417 AHGEVVCAVTISN-PTRHVYTGGK-GCVKVWDISQPGNKS---------PVSQLDC---LNRDNYIRSCKLLP-DGRTLI  481 (705)
T ss_pred             ccCcEEEEEEecC-CcceeEecCC-CeEEEeeccCCCCCC---------ccccccc---cCcccceeeeEecC-CCceEE
Confidence            5777777788874 4677877754 779999986432111         1111111   11223466777776 899999


Q ss_pred             EEeCCCeEEEEECCCCeeeEEEecCC---ceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEE
Q 013274          121 TGSYDHYVKVWDTNCTRVVMNFKMPG---KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVE  197 (446)
Q Consensus       121 s~s~D~~i~iWd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~  197 (446)
                      +|++-.++-|||+....+..+.+++.   ..+.++++++   ..+..+++.||.|.|||+.+...++.|+||++.+.||.
T Consensus       482 vGGeastlsiWDLAapTprikaeltssapaCyALa~spD---akvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascId  558 (705)
T KOG0639|consen  482 VGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD---AKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID  558 (705)
T ss_pred             eccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCc---cceeeeeccCCcEEEEEcccceeeecccCCCCCceeEE
Confidence            99999999999998876654444433   2455666664   46888889999999999999999999999999999999


Q ss_pred             EecCCCeEEEEeeCCCcEEEEEccCCceeEEeeccccc---ccCCCcccccceeeccccccCCCCCcCCCCccccccCCC
Q 013274          198 WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQ---LGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGN  274 (446)
Q Consensus       198 ~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (446)
                      ++++|.. |.||+-|+++|-||+|.+..+...+- .++   +|.++.-                   ....  ....+  
T Consensus       559 is~dGtk-lWTGGlDntvRcWDlregrqlqqhdF-~SQIfSLg~cP~~-------------------dWla--vGMen--  613 (705)
T KOG0639|consen  559 ISKDGTK-LWTGGLDNTVRCWDLREGRQLQQHDF-SSQIFSLGYCPTG-------------------DWLA--VGMEN--  613 (705)
T ss_pred             ecCCCce-eecCCCccceeehhhhhhhhhhhhhh-hhhheecccCCCc-------------------ccee--eeccc--
Confidence            9999875 79999999999999998653321110 001   1111100                   0000  00000  


Q ss_pred             ceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEee
Q 013274          275 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQ  354 (446)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~  354 (446)
                          +....+...+...           ..+..|.+-|.+|.|.+.|++++|.|.|..+..|...-+...+.        
T Consensus       614 ----s~vevlh~skp~k-----------yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFq--------  670 (705)
T KOG0639|consen  614 ----SNVEVLHTSKPEK-----------YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ--------  670 (705)
T ss_pred             ----CcEEEEecCCccc-----------eeecccccEEEEEEecccCceeeecCchhhhhhccCccccceee--------
Confidence                0000111111110           11346788899999999999999999999999997655432111        


Q ss_pred             cCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCC
Q 013274          355 TSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP  425 (446)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~  425 (446)
                                                            ....+.|+||.+|.|++++||||.|...-|+.+
T Consensus       671 --------------------------------------skE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  671 --------------------------------------SKESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             --------------------------------------ccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence                                                  013467999999999999999999998888753

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=8.7e-22  Score=171.12  Aligned_cols=278  Identities=19%  Similarity=0.310  Sum_probs=186.4

Q ss_pred             eeEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEe-ec
Q 013274           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWY-PV  114 (446)
Q Consensus        36 ~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~-~~  114 (446)
                      +.+..+|..-|+++.|++ .|+.+||+|.|++|+|||.+....        ...  .   ..+...|.+.|..+.|. |.
T Consensus         6 ~pi~s~h~DlihdVs~D~-~GRRmAtCSsDq~vkI~d~~~~s~--------~W~--~---Ts~Wrah~~Si~rV~WAhPE   71 (361)
T KOG2445|consen    6 APIDSGHKDLIHDVSFDF-YGRRMATCSSDQTVKIWDSTSDSG--------TWS--C---TSSWRAHDGSIWRVVWAHPE   71 (361)
T ss_pred             cccccCCcceeeeeeecc-cCceeeeccCCCcEEEEeccCCCC--------ceE--E---eeeEEecCCcEEEEEecCcc
Confidence            345678999999999997 588999999999999999754321        000  0   01224799999999995 55


Q ss_pred             CCcEEEEEeCCCeEEEEECC-----C--CeeeEEEe---cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc---
Q 013274          115 DTGLFVTGSYDHYVKVWDTN-----C--TRVVMNFK---MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA---  181 (446)
Q Consensus       115 ~~~~l~s~s~D~~i~iWd~~-----~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~---  181 (446)
                      -|+.+|++|+|+++.||.-.     .  .+-++.-.   -.+.+..+.|.|...+ -.+|+++.||.+|||+.-...   
T Consensus        72 fGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlG-LklA~~~aDG~lRIYEA~dp~nLs  150 (361)
T KOG2445|consen   72 FGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLG-LKLAAASADGILRIYEAPDPMNLS  150 (361)
T ss_pred             ccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcc-eEEEEeccCcEEEEEecCCccccc
Confidence            69999999999999999752     1  11122212   2345788899887543 467899999999999875432   


Q ss_pred             ---eeeeee-------CCCCCeEEEEEecCC--CeEEEEeeCC-----CcEEEEEccCCceeEEeecccccccCCCcccc
Q 013274          182 ---ISQTLS-------GHRDGIMTVEWSTSS--EWILVTGGCD-----GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLK  244 (446)
Q Consensus       182 ---~~~~l~-------~h~~~v~sv~~s~~~--~~~l~S~s~D-----g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~  244 (446)
                         +...++       .+..+..||.|+|..  +-.|+.|+.+     +.++||-...+..                   
T Consensus       151 ~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~r-------------------  211 (361)
T KOG2445|consen  151 QWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGR-------------------  211 (361)
T ss_pred             cchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcc-------------------
Confidence               222222       466677899998753  1245666544     3677775332110                   


Q ss_pred             cceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccC-C--
Q 013274          245 RKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED-G--  321 (446)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~d-g--  321 (446)
                                                                           .+.....+.+|..+|+.|+|.|+ |  
T Consensus       212 -----------------------------------------------------Kw~kva~L~d~~dpI~di~wAPn~Gr~  238 (361)
T KOG2445|consen  212 -----------------------------------------------------KWLKVAELPDHTDPIRDISWAPNIGRS  238 (361)
T ss_pred             -----------------------------------------------------eeeeehhcCCCCCcceeeeeccccCCc
Confidence                                                                 00000113478899999999997 3  


Q ss_pred             -CEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceE
Q 013274          322 -MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVN  400 (446)
Q Consensus       322 -~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~  400 (446)
                       ..||+++.|| |+||.++..+..+.  +...          ..++..       ..   +   .=+.+..|.+|.+.|+
T Consensus       239 y~~lAvA~kDg-v~I~~v~~~~s~i~--~ee~----------~~~~~~-------~~---l---~v~~vs~~~~H~~~VW  292 (361)
T KOG2445|consen  239 YHLLAVATKDG-VRIFKVKVARSAIE--EEEV----------LAPDLM-------TD---L---PVEKVSELDDHNGEVW  292 (361)
T ss_pred             eeeEEEeecCc-EEEEEEeeccchhh--hhcc----------cCCCCc-------cc---c---ceEEeeeccCCCCceE
Confidence             3689999999 99999886432211  0000          000000       00   0   1123457889999999


Q ss_pred             EEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274          401 CCCFSSQDQELYTGGNDRQILVWCPS  426 (446)
Q Consensus       401 ~~~fSpd~~~lvtgs~D~~v~vW~~~  426 (446)
                      .|.|.--|..|+|.|.||+||+|...
T Consensus       293 rv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  293 RVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             EEEEeeeeeEEeecCCCceeeehhhh
Confidence            99999999999999999999999654

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.91  E-value=4.5e-22  Score=180.12  Aligned_cols=168  Identities=18%  Similarity=0.332  Sum_probs=140.9

Q ss_pred             EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (446)
Q Consensus        38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~  117 (446)
                      +++||+..|+++.|++ +...++++|.|..|+||.......                 ......|...|+.+..+| .++
T Consensus       256 ~~~Gh~kki~~v~~~~-~~~~v~~aSad~~i~vws~~~~s~-----------------~~~~~~h~~~V~~ls~h~-tge  316 (506)
T KOG0289|consen  256 TLKGHTKKITSVKFHK-DLDTVITASADEIIRVWSVPLSSE-----------------PTSSRPHEEPVTGLSLHP-TGE  316 (506)
T ss_pred             hccCcceEEEEEEecc-chhheeecCCcceEEeeccccccC-----------------ccccccccccceeeeecc-CCc
Confidence            4689999999999997 567899999999999998754321                 112246888999888887 789


Q ss_pred             EEEEEeCCCeEEEEECCCCeeeEEEecCCc---eEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeE
Q 013274          118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGK---VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM  194 (446)
Q Consensus       118 ~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~  194 (446)
                      +|+++|.|++.-+.|+.++..+........   +.+.+|+|+   +.+|++|..|+.|++||+..+.....|.+|.++|.
T Consensus       317 YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpD---gLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk  393 (506)
T KOG0289|consen  317 YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPD---GLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVK  393 (506)
T ss_pred             EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCC---ceEEeccCCCceEEEEEcCCccccccCCCCCCcee
Confidence            999999999999999999998877665322   566777774   56999999999999999999999999999999999


Q ss_pred             EEEEecCCCeEEEEeeCCCcEEEEEccCCceeEE
Q 013274          195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRV  228 (446)
Q Consensus       195 sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~  228 (446)
                      +|+|+.+| |.|++++.|+.|++||+|+.+.++.
T Consensus       394 ~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~kt  426 (506)
T KOG0289|consen  394 AISFSENG-YWLATAADDGSVKLWDLRKLKNFKT  426 (506)
T ss_pred             EEEeccCc-eEEEEEecCCeEEEEEehhhcccce
Confidence            99999876 5689999999999999998665443

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=4.6e-22  Score=181.70  Aligned_cols=279  Identities=20%  Similarity=0.336  Sum_probs=193.2

Q ss_pred             CEEEEeeCCCc-EEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeC-CCeEEEEECC
Q 013274           57 RYLLSGASDSS-VAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY-DHYVKVWDTN  134 (446)
Q Consensus        57 ~~l~s~s~Dg~-i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~-D~~i~iWd~~  134 (446)
                      .++.++|.|.. +.+||+.++...      ...+.-     ....+|.-.    +   .++.+++++.. --.+.+|.+.
T Consensus         8 ~~~sssS~d~~~~~~~dl~TGt~~------~~ykg~-----~~a~~~sl~----~---l~~~yllsaq~~rp~l~vw~i~   69 (476)
T KOG0646|consen    8 TVCSSSSFDPINCIVWDLRTGTSL------LQYKGS-----YLAQAASLT----A---LNNEYLLSAQLKRPLLHVWEIL   69 (476)
T ss_pred             EEEeccCCCCcceeEEecCCCcee------EEecCc-----ccccchhhh----h---hchhheeeecccCccccccccC
Confidence            34555566654 999999988631      011100     011122210    1   12345655543 3579999986


Q ss_pred             CCeeeE-EEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCC
Q 013274          135 CTRVVM-NFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDG  213 (446)
Q Consensus       135 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg  213 (446)
                      ...... .+-++|.+.+++..+.   +.+++.|...+.+++|.+.+|.++..+.+|=..|+++.|+.|+.. |+|||.||
T Consensus        70 k~~~~~q~~v~Pg~v~al~s~n~---G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~-iiTgskDg  145 (476)
T KOG0646|consen   70 KKDQVVQYIVLPGPVHALASSNL---GYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSH-IITGSKDG  145 (476)
T ss_pred             chhhhhhhcccccceeeeecCCC---ceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcE-EEecCCCc
Confidence            544333 4557888888887764   457777778999999999999999999999999999999999985 78999999


Q ss_pred             cEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccc
Q 013274          214 AIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQR  293 (446)
Q Consensus       214 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (446)
                      .|.+|++..-     ..+.+.                                                           
T Consensus       146 ~V~vW~l~~l-----v~a~~~-----------------------------------------------------------  161 (476)
T KOG0646|consen  146 AVLVWLLTDL-----VSADND-----------------------------------------------------------  161 (476)
T ss_pred             cEEEEEEEee-----cccccC-----------------------------------------------------------
Confidence            9999997531     110000                                                           


Q ss_pred             cCCCcccccccccccccCeEEEEEccCC--CEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEE
Q 013274          294 LHPGMLSSQDRATAHYGAVTGLKVTEDG--MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVF  371 (446)
Q Consensus       294 ~~~~~~~~~~~~~~h~~~v~~l~fs~dg--~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (446)
                         ....+...+..|.-+|+.+...+.|  .+|+|.|.|.++|+||+..+.-. .   ...+ ......++..|-...++
T Consensus       162 ---~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL-l---ti~f-p~si~av~lDpae~~~y  233 (476)
T KOG0646|consen  162 ---HSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL-L---TITF-PSSIKAVALDPAERVVY  233 (476)
T ss_pred             ---CCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceee-E---EEec-CCcceeEEEcccccEEE
Confidence               0001112345788899998887654  58999999999999999987421 1   1111 23455677778788888


Q ss_pred             EeCCC-ceEEEEeec----------------CceEEEeccccc--ceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCC
Q 013274          372 VPCMT-AVKAFDIWS----------------GKTCLTFRGHYE--YVNCCCFSSQDQELYTGGNDRQILVWCPSRHI  429 (446)
Q Consensus       372 ~~~~~-~~~~~d~~~----------------~~~~~~l~gH~~--~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~  429 (446)
                      +++.. .+-+.++..                +.....+.||.+  .|+|+++|.||.+|++|+.||+|+||++....
T Consensus       234 iGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q  310 (476)
T KOG0646|consen  234 IGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ  310 (476)
T ss_pred             ecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence            87653 344444322                234568899999  99999999999999999999999999997543

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=6.1e-22  Score=171.66  Aligned_cols=240  Identities=24%  Similarity=0.333  Sum_probs=170.6

Q ss_pred             CccccEeEEEEeecCCcEEEEEeCCCeEEEEECCC-Ceee--EEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeC
Q 013274          101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNC-TRVV--MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI  177 (446)
Q Consensus       101 gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~  177 (446)
                      .....|.++.|+|....+++.+|+|++||+|++.. +..+  ....+.+++.+++++.++   ..+++|+.|+.+++|||
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddg---skVf~g~~Dk~~k~wDL  101 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDG---SKVFSGGCDKQAKLWDL  101 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCC---ceEEeeccCCceEEEEc
Confidence            34567888999986666888999999999999976 3332  223467889999998754   47889999999999999


Q ss_pred             CCCceeeeeeCCCCCeEEEEEecCCC-eEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccC
Q 013274          178 ASGAISQTLSGHRDGIMTVEWSTSSE-WILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAG  256 (446)
Q Consensus       178 ~~~~~~~~l~~h~~~v~sv~~s~~~~-~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (446)
                      .++. ...+..|.++|.++.|.+... .+|+|||+|++||+||+|....+..++-                         
T Consensus       102 ~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-------------------------  155 (347)
T KOG0647|consen  102 ASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-------------------------  155 (347)
T ss_pred             cCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-------------------------
Confidence            9994 556778999999999987654 2689999999999999997544332210                         


Q ss_pred             CCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEE
Q 013274          257 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW  336 (446)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lW  336 (446)
                                                                          ...+.+++.  -...++.+..++.|.+|
T Consensus       156 ----------------------------------------------------PeRvYa~Dv--~~pm~vVata~r~i~vy  181 (347)
T KOG0647|consen  156 ----------------------------------------------------PERVYAADV--LYPMAVVATAERHIAVY  181 (347)
T ss_pred             ----------------------------------------------------cceeeehhc--cCceeEEEecCCcEEEE
Confidence                                                                012333322  23467778889999999


Q ss_pred             ecCcCceeeeeeeE-EEeecCCCeEEEEcCCCcEEEEeC-CCceEEEEeecC--ceEEEeccccc---------ceEEEE
Q 013274          337 DVESGRNTLVNFET-VRLQTSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSG--KTCLTFRGHYE---------YVNCCC  403 (446)
Q Consensus       337 d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~--~~~~~l~gH~~---------~v~~~~  403 (446)
                      +++++...+...+. ++.+   .-.++...+....+++. .+.+.+..+..+  +.--+|+.|..         .|++++
T Consensus       182 nL~n~~te~k~~~SpLk~Q---~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~  258 (347)
T KOG0647|consen  182 NLENPPTEFKRIESPLKWQ---TRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIA  258 (347)
T ss_pred             EcCCCcchhhhhcCcccce---eeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceE
Confidence            99875432211110 1110   11234444444444443 357778888776  44457777762         589999


Q ss_pred             EcCCCCEEEEeeCCCcEEEeCCC
Q 013274          404 FSSQDQELYTGGNDRQILVWCPS  426 (446)
Q Consensus       404 fSpd~~~lvtgs~D~~v~vW~~~  426 (446)
                      |+|....|||++.||+...||.+
T Consensus       259 FhP~hgtlvTaGsDGtf~FWDkd  281 (347)
T KOG0647|consen  259 FHPVHGTLVTAGSDGTFSFWDKD  281 (347)
T ss_pred             eecccceEEEecCCceEEEecch
Confidence            99999999999999999999987

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.90  E-value=4.6e-22  Score=187.89  Aligned_cols=311  Identities=18%  Similarity=0.272  Sum_probs=208.2

Q ss_pred             eEEEeecC--CCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeC
Q 013274           47 NSLQVDLT--EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY  124 (446)
Q Consensus        47 ~~l~~s~~--~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~  124 (446)
                      ++..|++.  ....|+-+.+||.|.++|.+.....       ..+..+    .....|..+|..+.|.| ...+|++++-
T Consensus        53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr-------~ee~~l----k~~~aH~nAifDl~wap-ge~~lVsasG  120 (720)
T KOG0321|consen   53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFR-------LEERQL----KKPLAHKNAIFDLKWAP-GESLLVSASG  120 (720)
T ss_pred             ccccccCCCCccceEEEecCCCceeeecchhhhcc-------hhhhhh----cccccccceeEeeccCC-CceeEEEccC
Confidence            34666533  3568999999999999998643211       000000    12257999999999998 6679999999


Q ss_pred             CCeEEEEECCCCeeeEE---EecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc--------------------
Q 013274          125 DHYVKVWDTNCTRVVMN---FKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA--------------------  181 (446)
Q Consensus       125 D~~i~iWd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~--------------------  181 (446)
                      |.++++||+++..+...   +.+.+.+-+++|.++.+  .+|++|+.|+.|.|||++...                    
T Consensus       121 DsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~--~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~pt  198 (720)
T KOG0321|consen  121 DSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNP--AVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPT  198 (720)
T ss_pred             CceeeeeeeccceeecceeecccccccchhhhccCCC--cceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCC
Confidence            99999999998877654   34555677778887654  589999999999999986322                    


Q ss_pred             e-------eeeeeCCCCCeEE---EEEecCCCeEEEEeeC-CCcEEEEEccCCceeEEeecccccccCCCcccccceeec
Q 013274          182 I-------SQTLSGHRDGIMT---VEWSTSSEWILVTGGC-DGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSIS  250 (446)
Q Consensus       182 ~-------~~~l~~h~~~v~s---v~~s~~~~~~l~S~s~-Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (446)
                      .       +..-..|...+.+   +.+..|.. .|||++. |+.|++||+|+..+....+    ..+.            
T Consensus       199 pskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~-tlaSaga~D~~iKVWDLRk~~~~~r~e----p~~~------------  261 (720)
T KOG0321|consen  199 PSKPLKKRIRKWKAASNTIFSSVTVVLFKDES-TLASAGAADSTIKVWDLRKNYTAYRQE----PRGS------------  261 (720)
T ss_pred             CCchhhccccccccccCceeeeeEEEEEeccc-eeeeccCCCcceEEEeecccccccccC----CCcc------------
Confidence            0       0111234555555   55556655 4788777 9999999999764321110    0000            


Q ss_pred             cccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecC
Q 013274          251 KSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD  330 (446)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D  330 (446)
                                                              . .+.    ...    ...-.+.++....-|.||.+...|
T Consensus       262 ----------------------------------------~-~~~----t~s----krs~G~~nL~lDssGt~L~AsCtD  292 (720)
T KOG0321|consen  262 ----------------------------------------D-KYP----THS----KRSVGQVNLILDSSGTYLFASCTD  292 (720)
T ss_pred             ----------------------------------------c-Ccc----Ccc----cceeeeEEEEecCCCCeEEEEecC
Confidence                                                    0 000    000    001126777777888888777779


Q ss_pred             CcEEEEecCcCceeee-eeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCc-eEEEecccccceEEEEEcCC
Q 013274          331 SRIRLWDVESGRNTLV-NFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGK-TCLTFRGHYEYVNCCCFSSQ  407 (446)
Q Consensus       331 ~~i~lWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~-~~~~l~gH~~~v~~~~fSpd  407 (446)
                      ++|.+||+.+.....+ .+.. .+....-+.-..++++..++++.. ....+|.+.+.+ ....|.||+-.|++++|.|.
T Consensus       293 ~sIy~ynm~s~s~sP~~~~sg-~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS  371 (720)
T KOG0321|consen  293 NSIYFYNMRSLSISPVAEFSG-KLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPS  371 (720)
T ss_pred             CcEEEEeccccCcCchhhccC-cccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccc
Confidence            9999999987433221 1111 111111233456788888888765 478999997765 45788999999999999986


Q ss_pred             C-CEEEEeeCCCcEEEeCCCCCCCCCcCCCcc
Q 013274          408 D-QELYTGGNDRQILVWCPSRHISDGVDAGPM  438 (446)
Q Consensus       408 ~-~~lvtgs~D~~v~vW~~~~~~~~~~~~~~~  438 (446)
                      . .-++|||+|..++||++..+.-+...+.+.
T Consensus       372 ~~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~  403 (720)
T KOG0321|consen  372 ATTPVATCSDDFRVKIWRLSNGLEEIYAADKD  403 (720)
T ss_pred             cCCCceeeccCcceEEEeccCchhhccccccc
Confidence            4 558899999999999998776665555543

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=1.4e-22  Score=182.21  Aligned_cols=255  Identities=20%  Similarity=0.272  Sum_probs=190.1

Q ss_pred             cccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCee-eEEEecCCc---eEEeeeccCCCCceEEEEeeCCCcEE
Q 013274           98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRV-VMNFKMPGK---VYRTAMSPLAASHMLIAAGTEDVQVR  173 (446)
Q Consensus        98 ~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~lasgs~d~~v~  173 (446)
                      ..+.|+.+|+-+.|++ +|++|||+|.|.+..+|.+..... ....++.++   +..+.++|+   ..++++++.|..+.
T Consensus       219 il~~htdEVWfl~FS~-nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPD---dryLlaCg~~e~~~  294 (519)
T KOG0293|consen  219 ILQDHTDEVWFLQFSH-NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPD---DRYLLACGFDEVLS  294 (519)
T ss_pred             hHhhCCCcEEEEEEcC-CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCC---CCeEEecCchHhee
Confidence            4568999999888876 899999999999999999754322 222333344   455566664   45777778888899


Q ss_pred             EEeCCCCceeeeee-CCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccc
Q 013274          174 LCDIASGAISQTLS-GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKS  252 (446)
Q Consensus       174 vwd~~~~~~~~~l~-~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (446)
                      +||+.+|.....++ +|...+.+.+|.||+.. |++|+.|++|..||+....    +.                      
T Consensus       295 lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn~----~~----------------------  347 (519)
T KOG0293|consen  295 LWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGNI----LG----------------------  347 (519)
T ss_pred             eccCCcchhhhhcccCcCCCcceeEEccCCce-eEecCCCCcEEEecCCcch----hh----------------------
Confidence            99999998876664 56788999999999987 7999999999999986421    00                      


Q ss_pred             cccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCc
Q 013274          253 LSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSR  332 (446)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~  332 (446)
                                                               .+.+         .....|.+|+.++||+++++-..|..
T Consensus       348 -----------------------------------------~W~g---------vr~~~v~dlait~Dgk~vl~v~~d~~  377 (519)
T KOG0293|consen  348 -----------------------------------------NWEG---------VRDPKVHDLAITYDGKYVLLVTVDKK  377 (519)
T ss_pred             -----------------------------------------cccc---------cccceeEEEEEcCCCcEEEEEecccc
Confidence                                                     0000         01134889999999999999999999


Q ss_pred             EEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeC-CCceEEEEeecCceEEEecccccceE--EEEEc-CCC
Q 013274          333 IRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVN--CCCFS-SQD  408 (446)
Q Consensus       333 i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~l~gH~~~v~--~~~fS-pd~  408 (446)
                      |++++.++....-     +.....+...+..+.++.++.+.. ...+++||+...+++..+.||+..-.  .=+|- -|.
T Consensus       378 i~l~~~e~~~dr~-----lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~  452 (519)
T KOG0293|consen  378 IRLYNREARVDRG-----LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGND  452 (519)
T ss_pred             eeeechhhhhhhc-----cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCc
Confidence            9999988643210     011122445677788888777664 46899999999999999999975422  22233 356


Q ss_pred             CEEEEeeCCCcEEEeCCCCCCCCCcCCCcc
Q 013274          409 QELYTGGNDRQILVWCPSRHISDGVDAGPM  438 (446)
Q Consensus       409 ~~lvtgs~D~~v~vW~~~~~~~~~~~~~~~  438 (446)
                      .+++|||+|+.|.||+-.++++..+++|--
T Consensus       453 ~fiaSGSED~kvyIWhr~sgkll~~LsGHs  482 (519)
T KOG0293|consen  453 KFIASGSEDSKVYIWHRISGKLLAVLSGHS  482 (519)
T ss_pred             ceEEecCCCceEEEEEccCCceeEeecCCc
Confidence            899999999999999999998888888853

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.90  E-value=4.2e-21  Score=176.86  Aligned_cols=300  Identities=18%  Similarity=0.276  Sum_probs=206.1

Q ss_pred             CCccceeEEEeecCCCCEEEEeeCCCcEEEEEcc--cCcCCCCCCcc-------ccccceEEecc--------------c
Q 013274           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQ--RATDYEGGGHI-------AKHRSVFVVDK--------------Q   97 (446)
Q Consensus        41 ~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~--~~~~~~~~~~~-------~~~~~~~~~~~--------------~   97 (446)
                      .|.+.|++|+.- .+|. |+||+.|..|..||-+  +....+.....       .....+++...              .
T Consensus       285 aH~ggv~~L~~l-r~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~  362 (626)
T KOG2106|consen  285 AHDGGVFSLCML-RDGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTL  362 (626)
T ss_pred             ecCCceEEEEEe-cCcc-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceE
Confidence            899999999995 4564 7789999999999832  11111111111       11111111111              1


Q ss_pred             cccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeC
Q 013274           98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI  177 (446)
Q Consensus        98 ~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~  177 (446)
                      ...||..+.+.++.+| +..+++|++.|+.+++|+  ..+++.+.....+..++.|+|..    .+|.|+..|...+.|.
T Consensus       363 ~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg----~va~Gt~~G~w~V~d~  435 (626)
T KOG2106|consen  363 TVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG----VVAVGTATGRWFVLDT  435 (626)
T ss_pred             EEEecccceeeEEcCC-ChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc----eEEEeeccceEEEEec
Confidence            2258988999998888 566999999999999999  55666666666677788888753    6899999999999999


Q ss_pred             CCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCC
Q 013274          178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQ  257 (446)
Q Consensus       178 ~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (446)
                      ++...+..-.. +.++++|+|+|+|.. ||.|+.|+.|.||.+...+.....                            
T Consensus       436 e~~~lv~~~~d-~~~ls~v~ysp~G~~-lAvgs~d~~iyiy~Vs~~g~~y~r----------------------------  485 (626)
T KOG2106|consen  436 ETQDLVTIHTD-NEQLSVVRYSPDGAF-LAVGSHDNHIYIYRVSANGRKYSR----------------------------  485 (626)
T ss_pred             ccceeEEEEec-CCceEEEEEcCCCCE-EEEecCCCeEEEEEECCCCcEEEE----------------------------
Confidence            99665544444 889999999999985 799999999999987654321110                            


Q ss_pred             CCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEe
Q 013274          258 NSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWD  337 (446)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd  337 (446)
                                             .                       .+-|..+|+.|+||+|++||.+.+.|..|-+|.
T Consensus       486 -----------------------~-----------------------~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  486 -----------------------V-----------------------GKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK  519 (626)
T ss_pred             -----------------------e-----------------------eeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence                                   0                       011236799999999999999999999999995


Q ss_pred             cCcCcee--eeeeeE------EEee-----cCCCe-EEEEcCCCcEEEEeCC-CceEEEEee---cCceEEEecccccce
Q 013274          338 VESGRNT--LVNFET------VRLQ-----TSKPI-QLATTQDPAVVFVPCM-TAVKAFDIW---SGKTCLTFRGHYEYV  399 (446)
Q Consensus       338 ~~~~~~~--~~~~~~------~~~~-----~~~~~-~~~~~~~~~~~~~~~~-~~~~~~d~~---~~~~~~~l~gH~~~v  399 (446)
                      ...-+..  +..++.      +.+.     .+..+ .++-+.+..+++++.. ..++++..-   -....+.+.+|.+.|
T Consensus       520 ~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~v  599 (626)
T KOG2106|consen  520 PSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHV  599 (626)
T ss_pred             cccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeecccccee
Confidence            4332110  000000      0111     01111 1222233444444433 467887652   234567999999999


Q ss_pred             EEEEEcCCCCEEEEeeCCCcEEEeCC
Q 013274          400 NCCCFSSQDQELYTGGNDRQILVWCP  425 (446)
Q Consensus       400 ~~~~fSpd~~~lvtgs~D~~v~vW~~  425 (446)
                      ++++|+.+.+.|.|.+.|..|..|++
T Consensus       600 t~V~Fl~~d~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  600 TNVAFLCKDSHLISTGKDTSIMQWRL  625 (626)
T ss_pred             EEEEEeeCCceEEecCCCceEEEEEe
Confidence            99999999999998889999999975

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=2e-21  Score=190.75  Aligned_cols=250  Identities=19%  Similarity=0.304  Sum_probs=178.2

Q ss_pred             CCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccC-cCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274           40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRA-TDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (446)
Q Consensus        40 ~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~  118 (446)
                      ..|++.-+.|+|.+ +|.+|.+++.||.|++|+.... +.++.   |              .-|...|.++..   ++.+
T Consensus        10 yaht~G~t~i~~d~-~gefi~tcgsdg~ir~~~~~sd~e~P~t---i--------------~~~g~~v~~ia~---~s~~   68 (933)
T KOG1274|consen   10 YAHTGGLTLICYDP-DGEFICTCGSDGDIRKWKTNSDEEEPET---I--------------DISGELVSSIAC---YSNH   68 (933)
T ss_pred             hhccCceEEEEEcC-CCCEEEEecCCCceEEeecCCcccCCch---h--------------hccCceeEEEee---cccc
Confidence            37999999999997 5679999999999999987655 22210   0              114444555554   4459


Q ss_pred             EEEEeCCCeEEEEECCCCe---eeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEE
Q 013274          119 FVTGSYDHYVKVWDTNCTR---VVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT  195 (446)
Q Consensus       119 l~s~s~D~~i~iWd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~s  195 (446)
                      |++|+.|++|.++....++   .+..|.++  +..+++..   ++..+|.|+.|-.|++-++.+....+.+++|.++|.+
T Consensus        69 f~~~s~~~tv~~y~fps~~~~~iL~Rftlp--~r~~~v~g---~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~  143 (933)
T KOG1274|consen   69 FLTGSEQNTVLRYKFPSGEEDTILARFTLP--IRDLAVSG---SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ  143 (933)
T ss_pred             eEEeeccceEEEeeCCCCCccceeeeeecc--ceEEEEec---CCcEEEeecCceeEEEEeccccchheeecccCCceee
Confidence            9999999999999987664   45555544  44455554   4568999999999999999999999999999999999


Q ss_pred             EEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCc
Q 013274          196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNG  275 (446)
Q Consensus       196 v~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (446)
                      |.|+|.++ +||+.+.||.+++||+.++.+..++.......                                       
T Consensus       144 l~~~p~~~-fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n---------------------------------------  183 (933)
T KOG1274|consen  144 LSYDPKGN-FLAVSSCDGKVQIWDLQDGILSKTLTGVDKDN---------------------------------------  183 (933)
T ss_pred             eeEcCCCC-EEEEEecCceEEEEEcccchhhhhcccCCccc---------------------------------------
Confidence            99999987 58999999999999998765543332110000                                       


Q ss_pred             eeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeec
Q 013274          276 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT  355 (446)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~  355 (446)
                                   .       .         .....++.++|+|+|..++.-..|+.|++|+..+...... +.      
T Consensus       184 -------------~-------~---------~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~-Lr------  227 (933)
T KOG1274|consen  184 -------------E-------F---------ILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFK-LR------  227 (933)
T ss_pred             -------------c-------c---------cccceeeeeeecCCCCeEEeeccCCeEEEEccCCceehee-ec------
Confidence                         0       0         0012367789999987787888999999998765321110 00      


Q ss_pred             CCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCC
Q 013274          356 SKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR  427 (446)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~  427 (446)
                               +                           .-|...+.++.|||+|++||+++.|+.|.||+.++
T Consensus       228 ---------~---------------------------~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  228 ---------D---------------------------KLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             ---------c---------------------------cccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence                     0                           01222366777777777777777777777777764

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=1.4e-21  Score=170.10  Aligned_cols=240  Identities=22%  Similarity=0.299  Sum_probs=171.5

Q ss_pred             CccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC
Q 013274          101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG  180 (446)
Q Consensus       101 gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~  180 (446)
                      ..+..|.++.|.| .++.|+.+++||++++||+........+.+.+++...+|.+.    ..+++|+.||.|+++|++++
T Consensus        11 pP~d~IS~v~f~~-~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~----~~~~~G~~dg~vr~~Dln~~   85 (323)
T KOG1036|consen   11 PPEDGISSVKFSP-SSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADE----STIVTGGLDGQVRRYDLNTG   85 (323)
T ss_pred             CChhceeeEEEcC-cCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCC----ceEEEeccCceEEEEEecCC
Confidence            4566788999985 566777788999999999998877778888888888888763    35889999999999999998


Q ss_pred             ceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCC
Q 013274          181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSS  260 (446)
Q Consensus       181 ~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (446)
                      ... .+-.|.++|.+|.+++... .++|||||++|++||.|...+...++                              
T Consensus        86 ~~~-~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~~~~~d------------------------------  133 (323)
T KOG1036|consen   86 NED-QIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVVVGTFD------------------------------  133 (323)
T ss_pred             cce-eeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccccccccccc------------------------------
Confidence            653 4567999999999997655 57999999999999998522111100                              


Q ss_pred             cCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCc
Q 013274          261 VKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES  340 (446)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~  340 (446)
                                                                     ....|.++..+  |..|+.|..|..+.+||+.+
T Consensus       134 -----------------------------------------------~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn  164 (323)
T KOG1036|consen  134 -----------------------------------------------QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRN  164 (323)
T ss_pred             -----------------------------------------------cCceEEEEecc--CCEEEEeecCceEEEEEccc
Confidence                                                           01247766554  67888899999999999987


Q ss_pred             CceeeeeeeEEEeecCCC-eEEEEcCCCcEEEEe-CCCceEEEEeecC----ceEEEecccc---------cceEEEEEc
Q 013274          341 GRNTLVNFETVRLQTSKP-IQLATTQDPAVVFVP-CMTAVKAFDIWSG----KTCLTFRGHY---------EYVNCCCFS  405 (446)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~d~~~~----~~~~~l~gH~---------~~v~~~~fS  405 (446)
                      ....++..+   ...... -.+++.|...-.+++ -.+.+.+=+..+.    +....|..|.         -+|++++|+
T Consensus       165 ~~~~~q~re---S~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fh  241 (323)
T KOG1036|consen  165 LDEPFQRRE---SSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFH  241 (323)
T ss_pred             ccchhhhcc---ccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEec
Confidence            543221000   000111 124555554444433 3344444333333    3445677774         379999999


Q ss_pred             CCCCEEEEeeCCCcEEEeCCCCCC
Q 013274          406 SQDQELYTGGNDRQILVWCPSRHI  429 (446)
Q Consensus       406 pd~~~lvtgs~D~~v~vW~~~~~~  429 (446)
                      |=.+.||||+.||.|.+|++..-+
T Consensus       242 p~~~tfaTgGsDG~V~~Wd~~~rK  265 (323)
T KOG1036|consen  242 PIHGTFATGGSDGIVNIWDLFNRK  265 (323)
T ss_pred             cccceEEecCCCceEEEccCcchh
Confidence            999999999999999999997443

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=9.1e-22  Score=179.49  Aligned_cols=247  Identities=21%  Similarity=0.278  Sum_probs=178.1

Q ss_pred             CCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEE
Q 013274           40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF  119 (446)
Q Consensus        40 ~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l  119 (446)
                      +.|...|.+++.++ |++|||||+.|..|.||+.++....                 +.+.+|.+.|.+++|.- ....+
T Consensus       199 ~~h~keil~~avS~-Dgkylatgg~d~~v~Iw~~~t~ehv-----------------~~~~ghr~~V~~L~fr~-gt~~l  259 (479)
T KOG0299|consen  199 KGHVKEILTLAVSS-DGKYLATGGRDRHVQIWDCDTLEHV-----------------KVFKGHRGAVSSLAFRK-GTSEL  259 (479)
T ss_pred             ccccceeEEEEEcC-CCcEEEecCCCceEEEecCcccchh-----------------hcccccccceeeeeeec-Cccce
Confidence            37999999999985 7999999999999999999876532                 22468999999998875 66789


Q ss_pred             EEEeCCCeEEEEECCCCeeeE-EEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEE
Q 013274          120 VTGSYDHYVKVWDTNCTRVVM-NFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEW  198 (446)
Q Consensus       120 ~s~s~D~~i~iWd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~  198 (446)
                      +++|.|++|++|+++....+. .|.+++.+..+.....   ...+.+|..|.++++|++. ......+.+|.+.+.|++|
T Consensus       260 ys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~r---eR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~  335 (479)
T KOG0299|consen  260 YSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSR---ERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAF  335 (479)
T ss_pred             eeeecCCceEEEehhHhHHHHHHhCCccceeeechhcc---cceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEE
Confidence            999999999999998665443 3344555555444332   2345566699999999993 3344567889999999999


Q ss_pred             ecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceee
Q 013274          199 STSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQ  278 (446)
Q Consensus       199 s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (446)
                      -.+..  |+|||.||.|.+|++-+.+.+.+....+...                                          
T Consensus       336 In~~H--fvsGSdnG~IaLWs~~KKkplf~~~~AHgv~------------------------------------------  371 (479)
T KOG0299|consen  336 INDEH--FVSGSDNGSIALWSLLKKKPLFTSRLAHGVI------------------------------------------  371 (479)
T ss_pred             ecccc--eeeccCCceEEEeeecccCceeEeecccccc------------------------------------------
Confidence            86653  6899999999999987765443321111000                                          


Q ss_pred             cccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCC
Q 013274          279 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKP  358 (446)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~  358 (446)
                                       +.     -....+..+|++|+..|...+++||+.+|.||+|-++.+-..+..+..+.+ .+-.
T Consensus       372 -----------------~~-----~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~-~GfV  428 (479)
T KOG0299|consen  372 -----------------PE-----LDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL-VGFV  428 (479)
T ss_pred             -----------------CC-----ccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc-ccEE
Confidence                             00     001123357999999999999999999999999999886433333333332 2334


Q ss_pred             eEEEEcCCCcEEEEeCCC
Q 013274          359 IQLATTQDPAVVFVPCMT  376 (446)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~  376 (446)
                      ..+++++++..++++.+.
T Consensus       429 Nsl~f~~sgk~ivagiGk  446 (479)
T KOG0299|consen  429 NSLAFSNSGKRIVAGIGK  446 (479)
T ss_pred             EEEEEccCCCEEEEeccc
Confidence            567788888877777654

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=3.1e-22  Score=190.43  Aligned_cols=243  Identities=21%  Similarity=0.327  Sum_probs=175.3

Q ss_pred             CCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccC-ccccEeEEEEeecCCcE
Q 013274           40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG-HKYAISSAIWYPVDTGL  118 (446)
Q Consensus        40 ~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-h~~~V~~~~~~~~~~~~  118 (446)
                      .-+...|+++.|++ +|.+|+.|-.+|.|.|||+++.....                 ...+ |...|-++.|.   ...
T Consensus       214 ~~~~~~vtSv~ws~-~G~~LavG~~~g~v~iwD~~~~k~~~-----------------~~~~~h~~rvg~laW~---~~~  272 (484)
T KOG0305|consen  214 SFGEELVTSVKWSP-DGSHLAVGTSDGTVQIWDVKEQKKTR-----------------TLRGSHASRVGSLAWN---SSV  272 (484)
T ss_pred             ecCCCceEEEEECC-CCCEEEEeecCCeEEEEehhhccccc-----------------cccCCcCceeEEEecc---Cce
Confidence            33478999999986 68899999999999999987643211                 1124 88899999995   568


Q ss_pred             EEEEeCCCeEEEEECCCCeeeEE-Ee-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEE
Q 013274          119 FVTGSYDHYVKVWDTNCTRVVMN-FK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTV  196 (446)
Q Consensus       119 l~s~s~D~~i~iWd~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv  196 (446)
                      +.+|+.|+.|..+|+...+.... +. +...+..+.+++   +..++|+|+.|+.+.|||.....+...+..|.+.|.++
T Consensus       273 lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~---d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~  349 (484)
T KOG0305|consen  273 LSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP---DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKAL  349 (484)
T ss_pred             EEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC---CCCeeccCCCccceEeccCCCccccEEEeccceeeeEe
Confidence            99999999999999987665444 22 223355666666   45689999999999999998888899999999999999


Q ss_pred             EEecCCCeEEEEee--CCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCC
Q 013274          197 EWSTSSEWILVTGG--CDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGN  274 (446)
Q Consensus       197 ~~s~~~~~~l~S~s--~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (446)
                      +|+|..+.+||+|+  .|++|++||..++.++..++...+...-         .              .....++.....
T Consensus       350 awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL---------~--------------Wsk~~kEi~sth  406 (484)
T KOG0305|consen  350 AWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSL---------I--------------WSKKYKELLSTH  406 (484)
T ss_pred             eeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeE---------E--------------EcCCCCEEEEec
Confidence            99999888899865  6999999999988876665432221100         0              000000000000


Q ss_pred             cee--ecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcC
Q 013274          275 GVR--QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG  341 (446)
Q Consensus       275 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~  341 (446)
                      +..  ...+.+++.            ........+|...|..++++|||.++++|+.|.+++||++...
T Consensus       407 G~s~n~i~lw~~ps------------~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  407 GYSENQITLWKYPS------------MKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             CCCCCcEEEEeccc------------cceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            000  001111111            1122245799999999999999999999999999999998763

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.90  E-value=4e-21  Score=183.16  Aligned_cols=322  Identities=18%  Similarity=0.205  Sum_probs=204.7

Q ss_pred             EeCCCccceeEEEeecCCCC---EEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeec
Q 013274           38 IVSPHKGSINSLQVDLTEER---YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV  114 (446)
Q Consensus        38 ~~~~H~~~v~~l~~s~~~~~---~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~  114 (446)
                      .+.+|++.|+|+++-|+ ..   +++||+.|+.|++|.++..-               +....+.++|...+.|+.-.+ 
T Consensus        49 ~l~GH~a~VnC~~~l~~-s~~~a~~vsG~sD~~v~lW~l~~~~---------------~~~i~~~~g~~~~~~cv~a~~-  111 (764)
T KOG1063|consen   49 TLDGHVARVNCVHWLPT-SEIVAEMVSGDSDGRVILWKLRDEY---------------LIKIYTIQGHCKECVCVVARS-  111 (764)
T ss_pred             eccCCccceEEEEEccc-ccccceEEEccCCCcEEEEEEeehh---------------eEEEEeecCcceeEEEEEeee-
Confidence            46799999999999754 34   89999999999999987211               111234457887777664432 


Q ss_pred             CCcEEEEEeCCCeEEEEECCCCee--eEEEec-CCceE--EeeeccCCCCceEEEEeeCCCcEEEEeCCCC--ceeeeee
Q 013274          115 DTGLFVTGSYDHYVKVWDTNCTRV--VMNFKM-PGKVY--RTAMSPLAASHMLIAAGTEDVQVRLCDIASG--AISQTLS  187 (446)
Q Consensus       115 ~~~~l~s~s~D~~i~iWd~~~~~~--~~~~~~-~~~~~--~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~--~~~~~l~  187 (446)
                        ......+.|+++.+||....+.  ...+.. .+...  +++..+ .++..++|.|+.+..|.++.-.+.  .....+.
T Consensus       112 --~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~-~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~  188 (764)
T KOG1063|consen  112 --SVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALK-NNKTFLLACGGSKFVVDLYSSSADSFARVAELE  188 (764)
T ss_pred             --eEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhc-cCCcEEEEecCcceEEEEeccCCcceeEEEEee
Confidence              2223337899999999954441  111111 11222  223333 345678889999999999876644  4567889


Q ss_pred             CCCCCeEEEEEecCC--CeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCC
Q 013274          188 GHRDGIMTVEWSTSS--EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRA  265 (446)
Q Consensus       188 ~h~~~v~sv~~s~~~--~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (446)
                      ||.+-|.+++|...+  ..+|+|+|.|..||||.+.-...........                  ..+.          
T Consensus       189 GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~------------------~~t~----------  240 (764)
T KOG1063|consen  189 GHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNERED------------------SLTT----------  240 (764)
T ss_pred             ccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccccc------------------cccc----------
Confidence            999999999997654  3678999999999999986432111000000                  0000          


Q ss_pred             ccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceee
Q 013274          266 PQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTL  345 (446)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~  345 (446)
                      .    .+...+...        ..+.     ...+......||...|.++.|+|.+..|+|+|.|.++-+|...+..-.-
T Consensus       241 ~----~~~~~f~~l--------~~i~-----~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiW  303 (764)
T KOG1063|consen  241 L----SNLPVFMIL--------EEIQ-----YRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIW  303 (764)
T ss_pred             c----cCCceeeee--------eeEE-----EEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceE
Confidence            0    000000000        0000     0011112345999999999999999999999999999999776532111


Q ss_pred             eeeeEEEee-----cCCCeEEEEcCCCcEEEE-eCCCceEEEEeec---CceEEEecccccceEEEEEcCCCCEEEEeeC
Q 013274          346 VNFETVRLQ-----TSKPIQLATTQDPAVVFV-PCMTAVKAFDIWS---GKTCLTFRGHYEYVNCCCFSSQDQELYTGGN  416 (446)
Q Consensus       346 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~---~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~  416 (446)
                      +  ...++.     ...=....+++++..+.. +-.++.+.|.-.+   ........||.+.|.+++|.|.|.+|.|.|.
T Consensus       304 v--~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~  381 (764)
T KOG1063|consen  304 V--DVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSL  381 (764)
T ss_pred             E--EEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEecc
Confidence            1  111111     111123445666654444 3446778887222   1345678999999999999999999999999


Q ss_pred             CCcEEEeCCC
Q 013274          417 DRQILVWCPS  426 (446)
Q Consensus       417 D~~v~vW~~~  426 (446)
                      |+|-||+.+-
T Consensus       382 DQTTRlFa~w  391 (764)
T KOG1063|consen  382 DQTTRLFARW  391 (764)
T ss_pred             ccceeeeccc
Confidence            9999999776

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=9e-24  Score=201.94  Aligned_cols=224  Identities=24%  Similarity=0.469  Sum_probs=182.7

Q ss_pred             CCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCC
Q 013274           56 ERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNC  135 (446)
Q Consensus        56 ~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~  135 (446)
                      ..++++...+-..++||.+.                       ...|...|.++.. -..+..+++|++|..+-+|.+..
T Consensus         4 ~~~~m~~~~~t~Lr~~~~~~-----------------------~~~hsaav~~lk~-~~s~r~~~~Gg~~~k~~L~~i~k   59 (825)
T KOG0267|consen    4 MEFLMKTKRATKLRVWDTRE-----------------------FVAHSAAVGCLKI-RKSSRSLVTGGEDEKVNLWAIGK   59 (825)
T ss_pred             ccccceeeeeeccccccchh-----------------------hhhhhhhhceeee-eccceeeccCCCceeeccccccC
Confidence            34555666666677887642                       2356666766665 23567899999999999999876


Q ss_pred             CeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCc
Q 013274          136 TRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGA  214 (446)
Q Consensus       136 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~  214 (446)
                      ...+..+. +.+.+.++.+.+.   ..+|++|+.+|+|++||++.++.+++|.+|...+.+|.|+|-+.+ +++|+.|+.
T Consensus        60 p~~i~S~~~hespIeSl~f~~~---E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~-~a~gStdtd  135 (825)
T KOG0267|consen   60 PNAITSLTGHESPIESLTFDTS---ERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEF-FASGSTDTD  135 (825)
T ss_pred             CchhheeeccCCcceeeecCcc---hhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEE-ecccccccc
Confidence            66666644 3456777777764   458999999999999999999999999999999999999999875 699999999


Q ss_pred             EEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCcccccc
Q 013274          215 IRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRL  294 (446)
Q Consensus       215 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (446)
                      +++||+|..+|...+                                                                 
T Consensus       136 ~~iwD~Rk~Gc~~~~-----------------------------------------------------------------  150 (825)
T KOG0267|consen  136 LKIWDIRKKGCSHTY-----------------------------------------------------------------  150 (825)
T ss_pred             ceehhhhccCceeee-----------------------------------------------------------------
Confidence            999999977664433                                                                 


Q ss_pred             CCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeC
Q 013274          295 HPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC  374 (446)
Q Consensus       295 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (446)
                                 .+|...|..+.|+|+|+++++|+.|.++++||+..+                                 
T Consensus       151 -----------~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag---------------------------------  186 (825)
T KOG0267|consen  151 -----------KSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG---------------------------------  186 (825)
T ss_pred             -----------cCCcceeEEEeecCCCceeeccCCcceeeeeccccc---------------------------------
Confidence                       246667899999999999999999999999997643                                 


Q ss_pred             CCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC
Q 013274          375 MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH  428 (446)
Q Consensus       375 ~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~  428 (446)
                                  +...+|.+|++.+..+.|+|..-+|++||.|++|++|++++.
T Consensus       187 ------------k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf  228 (825)
T KOG0267|consen  187 ------------KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF  228 (825)
T ss_pred             ------------ccccccccccccccccccCchhhhhccCCCCceeeeecccee
Confidence                        334677889999999999999999999999999999999944

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.89  E-value=3.2e-21  Score=183.80  Aligned_cols=380  Identities=18%  Similarity=0.290  Sum_probs=219.2

Q ss_pred             eCCCccceeEEEeecCCC--CEEEEeeCCCcEEEEEcccCcCCC-----CCCccccccceEEec---------cccccCc
Q 013274           39 VSPHKGSINSLQVDLTEE--RYLLSGASDSSVAVYDVQRATDYE-----GGGHIAKHRSVFVVD---------KQHEHGH  102 (446)
Q Consensus        39 ~~~H~~~v~~l~~s~~~~--~~l~s~s~Dg~i~lWd~~~~~~~~-----~~~~~~~~~~~~~~~---------~~~~~gh  102 (446)
                      +.||..-|.+|+|....+  -+|+|+|+|..||||++.-+...+     ..-.+....+++...         .....||
T Consensus       187 l~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GH  266 (764)
T KOG1063|consen  187 LEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGH  266 (764)
T ss_pred             eeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCc
Confidence            579999999999975543  589999999999999975333111     000011112222111         1234599


Q ss_pred             cccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCe--eeEEEe---cCC---ceEEeeeccCCCCceEEEEeeCCCcEEE
Q 013274          103 KYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR--VVMNFK---MPG---KVYRTAMSPLAASHMLIAAGTEDVQVRL  174 (446)
Q Consensus       103 ~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~--~~~~~~---~~~---~~~~~~~~~~~~~~~~lasgs~d~~v~v  174 (446)
                      ..-|.++-|+| .+-.|+|+|.|+++.+|...+..  -+....   +.|   ..+...+.+.   ...+++.+..|..++
T Consensus       267 eDWV~sv~W~p-~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n---~~~ii~~g~~Gg~hl  342 (764)
T KOG1063|consen  267 EDWVYSVWWHP-EGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPN---SNVIIAHGRTGGFHL  342 (764)
T ss_pred             ccceEEEEEcc-chhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCC---CCEEEEecccCcEEE
Confidence            99999999998 56688999999999999865442  222222   121   2344445553   345677778899999


Q ss_pred             EeCCCCc---eeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCC-----------------ceeEEeecc-c
Q 013274          175 CDIASGA---ISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA-----------------GCFRVLDQS-Q  233 (446)
Q Consensus       175 wd~~~~~---~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~-----------------~~~~~~~~~-~  233 (446)
                      |-.+...   ....+.||.+.|+.|+|.|.|++ |+|.|.|.+-|++---..                 .|+..+... +
T Consensus       343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~psGef-lLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~  421 (764)
T KOG1063|consen  343 WKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEF-LLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQ  421 (764)
T ss_pred             EeccCccceeeccccccccccceeeeecCCCCE-EEEeccccceeeecccccccceeeecccccccccceeeehccCCce
Confidence            9843332   23356899999999999999996 679999999999853210                 011111100 0


Q ss_pred             ccccCCCcccccceeecc----c---ccc---C--CCCCcCCCCccc----------cccCCCc-e--eecccceeec--
Q 013274          234 SQLGRRPPLLKRKVSISK----S---LSA---G--QNSSVKPRAPQK----------RSANGNG-V--RQSSVGRIPA--  286 (446)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~----~---~~~---~--~~~~~~~~~~~~----------~~~~~~~-~--~~~~~~~~~~--  286 (446)
                      ..-|....+. +.+...+    .   +..   .  ........-+..          ....+.. .  ...+....+.  
T Consensus       422 FVSgAdEKVl-RvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L  500 (764)
T KOG1063|consen  422 FVSGADEKVL-RVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL  500 (764)
T ss_pred             eeecccceee-eeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence            0001000000 0000000    0   000   0  000000000000          0000000 0  0000000000  


Q ss_pred             -CCccccccC-CCcccccccccccccCeEEEEEccCCCEEEEeecCC-----cEEEEecCcCceeeeeeeEEEeecCCCe
Q 013274          287 -KGSVRQRLH-PGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS-----RIRLWDVESGRNTLVNFETVRLQTSKPI  359 (446)
Q Consensus       287 -~~~~~~~~~-~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~-----~i~lWd~~~~~~~~~~~~~~~~~~~~~~  359 (446)
                       ..+....+. ...+....++-||...|.+++.+|+|+++||+....     .|++|+..+=...    ..+..+.-...
T Consensus       501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~----~~L~~HsLTVT  576 (764)
T KOG1063|consen  501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQV----QELEGHSLTVT  576 (764)
T ss_pred             cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhh----heecccceEEE
Confidence             000000000 001111224568999999999999999999986543     4799987763211    11222333566


Q ss_pred             EEEEcCCCcEEEEeCCC-ceEEEEeecCce----EEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC
Q 013274          360 QLATTQDPAVVFVPCMT-AVKAFDIWSGKT----CLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH  428 (446)
Q Consensus       360 ~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~----~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~  428 (446)
                      +++|+||+.++++.+.+ .+.+|.......    ......|+..|+++.|+||+.+++|+|.|++|+||..+..
T Consensus       577 ~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  577 RLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             EEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence            89999999998887653 566666533221    2347789999999999999999999999999999976544

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=2.2e-20  Score=155.64  Aligned_cols=207  Identities=19%  Similarity=0.299  Sum_probs=156.5

Q ss_pred             CCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEee---cCC
Q 013274           40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYP---VDT  116 (446)
Q Consensus        40 ~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~---~~~  116 (446)
                      +.|.|+|+|.+|+| +|.+|+|||.|++|++--.+..+.-..     ++       .-++.-|.+.|..++|..   ..+
T Consensus        86 khhkgsiyc~~ws~-~geliatgsndk~ik~l~fn~dt~~~~-----g~-------dle~nmhdgtirdl~fld~~~s~~  152 (350)
T KOG0641|consen   86 KHHKGSIYCTAWSP-CGELIATGSNDKTIKVLPFNADTCNAT-----GH-------DLEFNMHDGTIRDLAFLDDPESGG  152 (350)
T ss_pred             cccCccEEEEEecC-ccCeEEecCCCceEEEEeccccccccc-----Cc-------ceeeeecCCceeeeEEecCCCcCc
Confidence            46899999999997 688999999999999987665443111     11       112346888999998853   234


Q ss_pred             cEEEEEeC-CCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeC--C---
Q 013274          117 GLFVTGSY-DHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG--H---  189 (446)
Q Consensus       117 ~~l~s~s~-D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~--h---  189 (446)
                      .+|++++. |..|.+=|-.+++....+. +.|++..+-  .  -++..+++|++|.+|++||++-+.++.++..  |   
T Consensus       153 ~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly--s--wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~g  228 (350)
T KOG0641|consen  153 AILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY--S--WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGG  228 (350)
T ss_pred             eEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE--E--ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCC
Confidence            56777654 6777776776777766554 455654332  1  1345799999999999999998887776642  2   


Q ss_pred             --CCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCcc
Q 013274          190 --RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQ  267 (446)
Q Consensus       190 --~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (446)
                        ...|.+|+..|.++ +|+||..|....+||+|.+..++.+                                      
T Consensus       229 lessavaav~vdpsgr-ll~sg~~dssc~lydirg~r~iq~f--------------------------------------  269 (350)
T KOG0641|consen  229 LESSAVAAVAVDPSGR-LLASGHADSSCMLYDIRGGRMIQRF--------------------------------------  269 (350)
T ss_pred             cccceeEEEEECCCcc-eeeeccCCCceEEEEeeCCceeeee--------------------------------------
Confidence              35689999999997 5899999999999999976543322                                      


Q ss_pred             ccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCc
Q 013274          268 KRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES  340 (446)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~  340 (446)
                                                            ..|...|+++.|||...||+|++.|..||+=|+..
T Consensus       270 --------------------------------------~phsadir~vrfsp~a~yllt~syd~~ikltdlqg  304 (350)
T KOG0641|consen  270 --------------------------------------HPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG  304 (350)
T ss_pred             --------------------------------------CCCccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence                                                  35677899999999999999999999999999875

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=1.9e-23  Score=199.75  Aligned_cols=203  Identities=23%  Similarity=0.461  Sum_probs=168.9

Q ss_pred             eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (446)
Q Consensus        39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~  118 (446)
                      +..|+..|.++..- ..++.+++|+.|..+-||.+...-..                 ..+.+|...|-++.+.+ ...+
T Consensus        24 ~~~hsaav~~lk~~-~s~r~~~~Gg~~~k~~L~~i~kp~~i-----------------~S~~~hespIeSl~f~~-~E~L   84 (825)
T KOG0267|consen   24 FVAHSAAVGCLKIR-KSSRSLVTGGEDEKVNLWAIGKPNAI-----------------TSLTGHESPIESLTFDT-SERL   84 (825)
T ss_pred             hhhhhhhhceeeee-ccceeeccCCCceeeccccccCCchh-----------------heeeccCCcceeeecCc-chhh
Confidence            45799999999874 35789999999999999987543210                 12469999999998876 5679


Q ss_pred             EEEEeCCCeEEEEECCCCeeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEE
Q 013274          119 FVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVE  197 (446)
Q Consensus       119 l~s~s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~  197 (446)
                      |+.|+.||+|++||++.++.++++.+ ...+.++.|+|+.   .++|+|+.|..+++||++...+..++.+|...|..+.
T Consensus        85 laagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~---~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~  161 (825)
T KOG0267|consen   85 LAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYG---EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLR  161 (825)
T ss_pred             hcccccCCceeeeehhhhhhhhhhhccccCcceeeeccce---EEeccccccccceehhhhccCceeeecCCcceeEEEe
Confidence            99999999999999999888776653 2345677788764   4779999999999999998889999999999999999


Q ss_pred             EecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCcee
Q 013274          198 WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVR  277 (446)
Q Consensus       198 ~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (446)
                      |+|+|+| ++++++|.+++|||++.++...                                                  
T Consensus       162 lsP~Gr~-v~~g~ed~tvki~d~~agk~~~--------------------------------------------------  190 (825)
T KOG0267|consen  162 LSPDGRW-VASGGEDNTVKIWDLTAGKLSK--------------------------------------------------  190 (825)
T ss_pred             ecCCCce-eeccCCcceeeeeccccccccc--------------------------------------------------
Confidence            9999997 6899999999999997654211                                                  


Q ss_pred             ecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCc
Q 013274          278 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES  340 (446)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~  340 (446)
                                                .+..|.+.+.++.|+|..-++++||.|++++|||+++
T Consensus       191 --------------------------ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dlet  227 (825)
T KOG0267|consen  191 --------------------------EFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLET  227 (825)
T ss_pred             --------------------------ccccccccccccccCchhhhhccCCCCceeeeeccce
Confidence                                      1246788899999999999999999999999999985

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=1.8e-21  Score=169.67  Aligned_cols=240  Identities=23%  Similarity=0.392  Sum_probs=163.3

Q ss_pred             eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecC-Cc
Q 013274           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD-TG  117 (446)
Q Consensus        39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~-~~  117 (446)
                      +..|.++|++|+++   +.++||||.|.+|+|||..+....                 .....|.+.|+++.|+++- ..
T Consensus        39 ~~aH~~sitavAVs---~~~~aSGssDetI~IYDm~k~~ql-----------------g~ll~HagsitaL~F~~~~S~s   98 (362)
T KOG0294|consen   39 FSAHAGSITALAVS---GPYVASGSSDETIHIYDMRKRKQL-----------------GILLSHAGSITALKFYPPLSKS   98 (362)
T ss_pred             ccccccceeEEEec---ceeEeccCCCCcEEEEeccchhhh-----------------cceeccccceEEEEecCCcchh
Confidence            45899999999995   589999999999999999765321                 1224689999999998643 23


Q ss_pred             EEEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeee-CCCCCeEE
Q 013274          118 LFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS-GHRDGIMT  195 (446)
Q Consensus       118 ~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~-~h~~~v~s  195 (446)
                      .|++|++||.|.+|+...-.++..+. +.+.+..++++|.   ..+.++-+.|+.+++||+-.|+....+. .|..  ..
T Consensus        99 hLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS---~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~a--t~  173 (362)
T KOG0294|consen   99 HLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPS---GKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKA--TL  173 (362)
T ss_pred             heeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCC---CceEEEEcCCceeeeehhhcCccceeeccCCcc--ee
Confidence            89999999999999998877777665 4566888888874   4577777889999999999987654443 2333  34


Q ss_pred             EEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCc
Q 013274          196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNG  275 (446)
Q Consensus       196 v~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (446)
                      |.|+|.|.++ +-++. ..|-+|-+.+.+.++.+.........  +.......    +..                    
T Consensus       174 v~w~~~Gd~F-~v~~~-~~i~i~q~d~A~v~~~i~~~~r~l~~--~~l~~~~L----~vG--------------------  225 (362)
T KOG0294|consen  174 VSWSPQGDHF-VVSGR-NKIDIYQLDNASVFREIENPKRILCA--TFLDGSEL----LVG--------------------  225 (362)
T ss_pred             eEEcCCCCEE-EEEec-cEEEEEecccHhHhhhhhccccceee--eecCCceE----EEe--------------------
Confidence            9999999874 44443 56999999887766655322111000  00000000    000                    


Q ss_pred             eeecccceeecCCccccccCCCcccccccccccccCeEEEEE--ccCCCEEEEeecCCcEEEEecCcC
Q 013274          276 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKV--TEDGMYLLSAGSDSRIRLWDVESG  341 (446)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~f--s~dg~~l~sgs~D~~i~lWd~~~~  341 (446)
                         .....+.       ..............+|...|-.+.+  .|++.||+|+|.||.|++||+...
T Consensus       226 ---~d~~~i~-------~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  226 ---GDNEWIS-------LKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             ---cCCceEE-------EeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence               0000000       0000001122345789999999884  477899999999999999999864

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.88  E-value=8.1e-21  Score=161.56  Aligned_cols=236  Identities=18%  Similarity=0.283  Sum_probs=180.1

Q ss_pred             eEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC
Q 013274           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (446)
Q Consensus        37 ~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~  116 (446)
                      ....+|.++|-.++|+|.....++++|.|++|++||...+++.            ..++.     ....+ -+.|+| ++
T Consensus        58 ~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~------------~~i~~-----~~eni-~i~wsp-~g  118 (313)
T KOG1407|consen   58 LVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCT------------ARIET-----KGENI-NITWSP-DG  118 (313)
T ss_pred             hcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEE------------EEeec-----cCcce-EEEEcC-CC
Confidence            3467999999999999988899999999999999998765431            11110     11122 346776 78


Q ss_pred             cEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEE
Q 013274          117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTV  196 (446)
Q Consensus       117 ~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv  196 (446)
                      .+++.++.|..|.+.|..+.+....++..-.++-+++..  .++ ++..-...|.|.|...-.-++++.+..|+....||
T Consensus       119 ~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~--~nd-~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI  195 (313)
T KOG1407|consen  119 EYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNN--SND-LFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICI  195 (313)
T ss_pred             CEEEEecCcccEEEEEecccceeehhcccceeeeeeecC--CCC-EEEEecCCceEEEEeccccccccccccCCcceEEE
Confidence            899999999999999999888877776655555666652  223 44444456899999888888999999999999999


Q ss_pred             EEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCce
Q 013274          197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGV  276 (446)
Q Consensus       197 ~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (446)
                      .|+|+|++ ||+|+.|-.+-+||+...-|.+.|.                                              
T Consensus       196 ~f~p~Gry-fA~GsADAlvSLWD~~ELiC~R~is----------------------------------------------  228 (313)
T KOG1407|consen  196 EFDPDGRY-FATGSADALVSLWDVDELICERCIS----------------------------------------------  228 (313)
T ss_pred             EECCCCce-EeeccccceeeccChhHhhhheeec----------------------------------------------
Confidence            99999997 7999999999999998766655441                                              


Q ss_pred             eecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecC
Q 013274          277 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTS  356 (446)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~  356 (446)
                                                    -+.=+|+.|.||.||++||+||.|..|-|=++++|... -.+    ...+
T Consensus       229 ------------------------------RldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~-~eI----~~~~  273 (313)
T KOG1407|consen  229 ------------------------------RLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRV-WEI----PCEG  273 (313)
T ss_pred             ------------------------------cccCceEEEEeccCcceeeccCccceEEeEecccCCeE-EEe----eccC
Confidence                                          12346999999999999999999999999998888642 111    1234


Q ss_pred             CCeEEEEcCCCcEEEEeCCC
Q 013274          357 KPIQLATTQDPAVVFVPCMT  376 (446)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~  376 (446)
                      +...++..|...+++-++.+
T Consensus       274 ~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  274 PTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             CceeEEecCCCceeeEEecC
Confidence            55567788887777777654

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.88  E-value=3.3e-21  Score=192.76  Aligned_cols=245  Identities=21%  Similarity=0.334  Sum_probs=184.4

Q ss_pred             ccEeEEEEeecCCcEEEEEe--CCCeEEEEECCCC------------eeeEE-EecCCceEEeeeccCCCCceEEEEeeC
Q 013274          104 YAISSAIWYPVDTGLFVTGS--YDHYVKVWDTNCT------------RVVMN-FKMPGKVYRTAMSPLAASHMLIAAGTE  168 (446)
Q Consensus       104 ~~V~~~~~~~~~~~~l~s~s--~D~~i~iWd~~~~------------~~~~~-~~~~~~~~~~~~~~~~~~~~~lasgs~  168 (446)
                      ..|.++..+| ++..+||||  .|+.++||+.+.-            ..+.+ ..+.+.+.++-|++   ++.+||+|+.
T Consensus        14 ~~IfSIdv~p-dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~---dG~~lAsGSD   89 (942)
T KOG0973|consen   14 KSIFSIDVHP-DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSP---DGSYLASGSD   89 (942)
T ss_pred             eeEEEEEecC-CceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECC---CCCeEeeccC
Confidence            3467777776 899999999  9999999986421            11111 12445677777776   4569999999


Q ss_pred             CCcEEEEeCCC----------C--------ceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEee
Q 013274          169 DVQVRLCDIAS----------G--------AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLD  230 (446)
Q Consensus       169 d~~v~vwd~~~----------~--------~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~  230 (446)
                      |..|.||....          |        +....+.+|.+.|..|.|+|++.+ |+|+|-|++|.|||.++.++++.  
T Consensus        90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~-lvS~s~DnsViiwn~~tF~~~~v--  166 (942)
T KOG0973|consen   90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSL-LVSVSLDNSVIIWNAKTFELLKV--  166 (942)
T ss_pred             cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccE-EEEecccceEEEEccccceeeee--
Confidence            99999999872          1        145678999999999999999885 89999999999999876433322  


Q ss_pred             cccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCccccccccccccc
Q 013274          231 QSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYG  310 (446)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  310 (446)
                                                                                                ..+|.+
T Consensus       167 --------------------------------------------------------------------------l~~H~s  172 (942)
T KOG0973|consen  167 --------------------------------------------------------------------------LRGHQS  172 (942)
T ss_pred             --------------------------------------------------------------------------eecccc
Confidence                                                                                      247888


Q ss_pred             CeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeec----CCCeEEEEcCCCcEEEEeCC-----CceEEE
Q 013274          311 AVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT----SKPIQLATTQDPAVVFVPCM-----TAVKAF  381 (446)
Q Consensus       311 ~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-----~~~~~~  381 (446)
                      .|..+.|.|-|+||+|-+.|++|+||++..=  .+.......+..    ..-.++..+||+..++++..     ..+.++
T Consensus       173 ~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw--~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Ii  250 (942)
T KOG0973|consen  173 LVKGVSWDPIGKYFASQSDDRTLKVWRTSDW--GIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAII  250 (942)
T ss_pred             cccceEECCccCeeeeecCCceEEEEEcccc--eeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEE
Confidence            8999999999999999999999999985541  111001111111    11235678899999988643     357788


Q ss_pred             EeecCceEEEecccccceEEEEEcCC-----CC------------EEEEeeCCCcEEEeCCCCCCCC
Q 013274          382 DIWSGKTCLTFRGHYEYVNCCCFSSQ-----DQ------------ELYTGGNDRQILVWCPSRHISD  431 (446)
Q Consensus       382 d~~~~~~~~~l~gH~~~v~~~~fSpd-----~~------------~lvtgs~D~~v~vW~~~~~~~~  431 (446)
                      +-.+.+.-..|-||.+++.|++|+|-     .+            .+|+||.|++|-||.-...++.
T Consensus       251 eR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl  317 (942)
T KOG0973|consen  251 ERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL  317 (942)
T ss_pred             ecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch
Confidence            87778888999999999999999991     22            5779999999999988766554

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=1.9e-21  Score=176.62  Aligned_cols=208  Identities=21%  Similarity=0.336  Sum_probs=155.4

Q ss_pred             CCEEEEeeCCCcEEEEEcccCcCCCCCCccc---cccceEEe-ccccccCccccEeEEEEeecCCcEEEEEeCCCeEEEE
Q 013274           56 ERYLLSGASDSSVAVYDVQRATDYEGGGHIA---KHRSVFVV-DKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVW  131 (446)
Q Consensus        56 ~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iW  131 (446)
                      |+|+|-|..|..|.|||+.-.....+.-.+.   +....... ......+|+.+|.++.+.-.....|||||.|+||++|
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW  271 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW  271 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence            6799999999999999985322111110111   00000000 0112358999999988876667899999999999999


Q ss_pred             ECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCcee-eeeeCCCCCeEEEEEecCCCeEEEEe
Q 013274          132 DTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAIS-QTLSGHRDGIMTVEWSTSSEWILVTG  209 (446)
Q Consensus       132 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~-~~l~~h~~~v~sv~~s~~~~~~l~S~  209 (446)
                      |++++++...+. +.+.+.++.|.+..+  ..|++|+.|++|.+.|++..... ... .-.+.|-.|+|.|.....++++
T Consensus       272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p--~~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VEkv~w~~~se~~f~~~  348 (463)
T KOG0270|consen  272 DVDTGKPKSSITHHGKKVQTLEWHPYEP--SVLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVEKVAWDPHSENSFFVS  348 (463)
T ss_pred             EcCCCCcceehhhcCCceeEEEecCCCc--eEEEeccccceEEeeeccCccccCceE-EeccceEEEEecCCCceeEEEe
Confidence            999999999888 456789999998765  58999999999999999853221 111 1346789999999988888899


Q ss_pred             eCCCcEEEEEccCCc-eeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCC
Q 013274          210 GCDGAIRFWDIRRAG-CFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKG  288 (446)
Q Consensus       210 s~Dg~I~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (446)
                      ..||+++-+|+|+.+ ++.                                                             
T Consensus       349 tddG~v~~~D~R~~~~~vw-------------------------------------------------------------  367 (463)
T KOG0270|consen  349 TDDGTVYYFDIRNPGKPVW-------------------------------------------------------------  367 (463)
T ss_pred             cCCceEEeeecCCCCCcee-------------------------------------------------------------
Confidence            999999999999642 110                                                             


Q ss_pred             ccccccCCCcccccccccccccCeEEEEEccCC-CEEEEeecCCcEEEEecCcCc
Q 013274          289 SVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVESGR  342 (446)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~sgs~D~~i~lWd~~~~~  342 (446)
                                     ...+|.++|.+|++++.- .+|+|+|.|+.+++|++....
T Consensus       368 ---------------t~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~  407 (463)
T KOG0270|consen  368 ---------------TLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS  407 (463)
T ss_pred             ---------------EEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence                           135799999999998764 578999999999999987543

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=9.2e-21  Score=172.97  Aligned_cols=288  Identities=19%  Similarity=0.299  Sum_probs=207.8

Q ss_pred             ccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEE
Q 013274           43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG  122 (446)
Q Consensus        43 ~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~  122 (446)
                      .+.|++|+|.| .-.+|++|+.|++++||-+......       ...++        .=-+.+|.++.|+|...+.++++
T Consensus       213 ~~~I~sv~FHp-~~plllvaG~d~~lrifqvDGk~N~-------~lqS~--------~l~~fPi~~a~f~p~G~~~i~~s  276 (514)
T KOG2055|consen  213 HGGITSVQFHP-TAPLLLVAGLDGTLRIFQVDGKVNP-------KLQSI--------HLEKFPIQKAEFAPNGHSVIFTS  276 (514)
T ss_pred             cCCceEEEecC-CCceEEEecCCCcEEEEEecCccCh-------hheee--------eeccCccceeeecCCCceEEEec
Confidence            47899999997 4679999999999999987532211       11111        12345677888888433499999


Q ss_pred             eCCCeEEEEECCCCeeeEEEecCC----ceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEE
Q 013274          123 SYDHYVKVWDTNCTRVVMNFKMPG----KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEW  198 (446)
Q Consensus       123 s~D~~i~iWd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~  198 (446)
                      |.-.-...||+.+.+....-+..+    ....+.+++++   .+|+..+..|.|.+.-..++..+.+++ -.+.|..+.|
T Consensus       277 ~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~---~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~f  352 (514)
T KOG2055|consen  277 GRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDS---NFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTF  352 (514)
T ss_pred             ccceEEEEeeccccccccccCCCCcccchhheeEecCCC---CeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEE
Confidence            999999999998877654333222    23455666654   478888899999999999999988876 5678999999


Q ss_pred             ecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceee
Q 013274          199 STSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQ  278 (446)
Q Consensus       199 s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (446)
                      +-+++. |+.++.+|.|.+||+++..|++.+.....                                            
T Consensus       353 sSdsk~-l~~~~~~GeV~v~nl~~~~~~~rf~D~G~--------------------------------------------  387 (514)
T KOG2055|consen  353 SSDSKE-LLASGGTGEVYVWNLRQNSCLHRFVDDGS--------------------------------------------  387 (514)
T ss_pred             ecCCcE-EEEEcCCceEEEEecCCcceEEEEeecCc--------------------------------------------
Confidence            988876 56677789999999999887766521100                                            


Q ss_pred             cccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceee--eeeeEEEeecC
Q 013274          279 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTL--VNFETVRLQTS  356 (446)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~--~~~~~~~~~~~  356 (446)
                                                  .|   -+.++.|++|.|||+||..|.|.|||..+.....  ..+..+..-..
T Consensus       388 ----------------------------v~---gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt  436 (514)
T KOG2055|consen  388 ----------------------------VH---GTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTT  436 (514)
T ss_pred             ----------------------------cc---eeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhhe
Confidence                                        01   2567788999999999999999999966532100  00111111122


Q ss_pred             CCeEEEEcCCCcEEEEeCC---CceEEEEeecCceEEEeccc---ccceEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274          357 KPIQLATTQDPAVVFVPCM---TAVKAFDIWSGKTCLTFRGH---YEYVNCCCFSSQDQELYTGGNDRQILVWCPS  426 (446)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~---~~~~~~d~~~~~~~~~l~gH---~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~  426 (446)
                      ....+.|.++..+++.++.   +++++..+-+......|+.-   -+.|+||+|||.+.+||-|-.++.|.+|.++
T Consensus       437 ~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  437 AITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             eeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            3456788888887766543   57888887766665555533   4678999999999999999999999999875

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=2e-21  Score=189.66  Aligned_cols=162  Identities=22%  Similarity=0.293  Sum_probs=132.8

Q ss_pred             eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (446)
Q Consensus        39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~  118 (446)
                      +.||++.|..|.||.  ..+|+|+|.|+|||||++....+..            +      -.|..-|+|++|+|.|..+
T Consensus       365 f~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~------------~------F~HndfVTcVaFnPvDDry  424 (712)
T KOG0283|consen  365 FKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLK------------V------FSHNDFVTCVAFNPVDDRY  424 (712)
T ss_pred             hhccchhheeccccc--CCeeEeccccccEEeecCCCcceee------------E------EecCCeeEEEEecccCCCc
Confidence            579999999999984  5799999999999999987655421            1      2688999999999999999


Q ss_pred             EEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeee--eCC------C
Q 013274          119 FVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL--SGH------R  190 (446)
Q Consensus       119 l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l--~~h------~  190 (446)
                      |+|||.|++||||++...+++.-..+..-+..+++.|++   ...+.|+.+|.+++|+....++....  .-|      .
T Consensus       425 FiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdG---k~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~  501 (712)
T KOG0283|consen  425 FISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDG---KGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG  501 (712)
T ss_pred             EeecccccceEEeecCcCeeEeehhhhhhheeEEeccCC---ceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence            999999999999999988887766677778888898864   57889999999999999887765432  111      2


Q ss_pred             CCeEEEEEecCCCeEEEEeeCCCcEEEEEccCC
Q 013274          191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA  223 (446)
Q Consensus       191 ~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~  223 (446)
                      ..|+.+.|.|.....++..+.|..|||+|++..
T Consensus       502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~  534 (712)
T KOG0283|consen  502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK  534 (712)
T ss_pred             ceeeeeEecCCCCCeEEEecCCCceEEEeccch
Confidence            279999999876643456688999999999754

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.88  E-value=1e-21  Score=170.74  Aligned_cols=209  Identities=23%  Similarity=0.421  Sum_probs=159.8

Q ss_pred             ccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCC------------------eeeEEE-ecCCceEEeeeccCCCC
Q 013274           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT------------------RVVMNF-KMPGKVYRTAMSPLAAS  159 (446)
Q Consensus        99 ~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~------------------~~~~~~-~~~~~~~~~~~~~~~~~  159 (446)
                      ...|+..+.+..|++ ||.++||||.|.+|+|.|++..                  -+++++ .+...+..+.|+|.   
T Consensus       108 lt~HK~~cR~aafs~-DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr---  183 (430)
T KOG0640|consen  108 LTSHKSPCRAAAFSP-DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR---  183 (430)
T ss_pred             EeecccceeeeeeCC-CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch---
Confidence            357999998888876 8999999999999999998621                  012222 23345666777764   


Q ss_pred             ceEEEEeeCCCcEEEEeCCCCceeeeee--CCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeeccccccc
Q 013274          160 HMLIAAGTEDVQVRLCDIASGAISQTLS--GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLG  237 (446)
Q Consensus       160 ~~~lasgs~d~~v~vwd~~~~~~~~~l~--~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~  237 (446)
                      ..+|++|+.|+.|++||.......+.++  ....+|.+++|.|.|.+ ++.|..-.++|+||+.+..|+-.-.       
T Consensus       184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGef-llvgTdHp~~rlYdv~T~Qcfvsan-------  255 (430)
T KOG0640|consen  184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEF-LLVGTDHPTLRLYDVNTYQCFVSAN-------  255 (430)
T ss_pred             hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCce-EEEecCCCceeEEeccceeEeeecC-------
Confidence            4589999999999999997654333222  34568999999999986 5678888999999999877653211       


Q ss_pred             CCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEE
Q 013274          238 RRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKV  317 (446)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~f  317 (446)
                                                                                        +..+|.+.|++|.+
T Consensus       256 ------------------------------------------------------------------Pd~qht~ai~~V~Y  269 (430)
T KOG0640|consen  256 ------------------------------------------------------------------PDDQHTGAITQVRY  269 (430)
T ss_pred             ------------------------------------------------------------------cccccccceeEEEe
Confidence                                                                              11368889999999


Q ss_pred             ccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEeccc-c
Q 013274          318 TEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGH-Y  396 (446)
Q Consensus       318 s~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH-~  396 (446)
                      ++.|+..+|||.||-||+||--++++..    +..                                        ..| .
T Consensus       270 s~t~~lYvTaSkDG~IklwDGVS~rCv~----t~~----------------------------------------~AH~g  305 (430)
T KOG0640|consen  270 SSTGSLYVTASKDGAIKLWDGVSNRCVR----TIG----------------------------------------NAHGG  305 (430)
T ss_pred             cCCccEEEEeccCCcEEeeccccHHHHH----HHH----------------------------------------hhcCC
Confidence            9999999999999999999976654311    000                                        123 2


Q ss_pred             cceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCC
Q 013274          397 EYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI  429 (446)
Q Consensus       397 ~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~  429 (446)
                      ..|.+..|+.|++++.|.+.|.+|++|.+.+++
T Consensus       306 sevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R  338 (430)
T KOG0640|consen  306 SEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR  338 (430)
T ss_pred             ceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence            467889999999999999999999999998775

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.88  E-value=2.5e-21  Score=172.52  Aligned_cols=225  Identities=25%  Similarity=0.473  Sum_probs=156.5

Q ss_pred             CCCccceeEEEeecC-CCCEEEEeeCCCcEEEEEcccCcCCCCCCcc----ccccceEEeccccccCccccEeEEEEeec
Q 013274           40 SPHKGSINSLQVDLT-EERYLLSGASDSSVAVYDVQRATDYEGGGHI----AKHRSVFVVDKQHEHGHKYAISSAIWYPV  114 (446)
Q Consensus        40 ~~H~~~v~~l~~s~~-~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~gh~~~V~~~~~~~~  114 (446)
                      .+|.+.||.++.++- +..++++=|..|.|+|||+...........+    ...++++     ++.+|+..=+++.|+|.
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~-----t~~ghk~EGy~LdWSp~  222 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLF-----TFNGHKGEGYGLDWSPI  222 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceE-----EecccCccceeeecccc
Confidence            479999999988754 3567777799999999998643211100000    1112222     22456665566666664


Q ss_pred             CCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCce---eeeeeCCCC
Q 013274          115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI---SQTLSGHRD  191 (446)
Q Consensus       115 ~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~---~~~l~~h~~  191 (446)
                      ....|+||.--+.|++|.                                            ..+|..   ..-+.+|+.
T Consensus       223 ~~g~LlsGDc~~~I~lw~--------------------------------------------~~~g~W~vd~~Pf~gH~~  258 (440)
T KOG0302|consen  223 KTGRLLSGDCVKGIHLWE--------------------------------------------PSTGSWKVDQRPFTGHTK  258 (440)
T ss_pred             cccccccCccccceEeee--------------------------------------------eccCceeecCcccccccc
Confidence            444555555445555553                                            333321   124567999


Q ss_pred             CeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCcccccc
Q 013274          192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSA  271 (446)
Q Consensus       192 ~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (446)
                      .|-.+.|||....+|+|||.||+|+|||+|.+..-..                                           
T Consensus       259 SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~-------------------------------------------  295 (440)
T KOG0302|consen  259 SVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAA-------------------------------------------  295 (440)
T ss_pred             chhhhccCCccCceEEeeecCceEEEEEecCCCccce-------------------------------------------
Confidence            9999999999888999999999999999996520000                                           


Q ss_pred             CCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEE
Q 013274          272 NGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV  351 (446)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~  351 (446)
                                                     ...++|.+.|+-|.|+.+-.+|++|+.||+++|||++.-+         
T Consensus       296 -------------------------------~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~---------  335 (440)
T KOG0302|consen  296 -------------------------------VSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFK---------  335 (440)
T ss_pred             -------------------------------eEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhcc---------
Confidence                                           0014678889999999988899999999999999997521         


Q ss_pred             EeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCC-CCEEEEeeCCCcEEEeCCCCCC
Q 013274          352 RLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQ-DQELYTGGNDRQILVWCPSRHI  429 (446)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd-~~~lvtgs~D~~v~vW~~~~~~  429 (446)
                                                       .++.+.+|.-|+.+|+|+.|+|. ...|+.+|.|.+|.|||+...+
T Consensus       336 ---------------------------------~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~  381 (440)
T KOG0302|consen  336 ---------------------------------SGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA  381 (440)
T ss_pred             ---------------------------------CCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence                                             12234566779999999999986 5678889999999999987443

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.87  E-value=2.4e-21  Score=178.90  Aligned_cols=212  Identities=22%  Similarity=0.332  Sum_probs=150.7

Q ss_pred             cCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCee----eEEEe-cC-CceEEeeeccCCCCceEEEEeeCCCcEE
Q 013274          100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRV----VMNFK-MP-GKVYRTAMSPLAASHMLIAAGTEDVQVR  173 (446)
Q Consensus       100 ~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~----~~~~~-~~-~~~~~~~~~~~~~~~~~lasgs~d~~v~  173 (446)
                      .+|+..|.++.+-| .|-+|+|||.|-+|++||+.....    .+.+. +. ..+.++.+++.+ +..++++|  ...++
T Consensus       164 ~hgtk~Vsal~~Dp-~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg-~~iLvvsg--~aqak  239 (641)
T KOG0772|consen  164 KHGTKIVSALAVDP-SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTG-DQILVVSG--SAQAK  239 (641)
T ss_pred             cCCceEEEEeeecC-CCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCC-CeEEEEec--Cccee
Confidence            57888898888776 788999999999999999865322    11111 22 236677777743 23333444  56899


Q ss_pred             EEeCCCCceee------------eeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCce-eEEeecccccccCCC
Q 013274          174 LCDIASGAISQ------------TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGC-FRVLDQSQSQLGRRP  240 (446)
Q Consensus       174 vwd~~~~~~~~------------~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~-~~~~~~~~~~~~~~~  240 (446)
                      |+|-+......            .-+||...+++..|+|..+..|+|++.||++||||+.+.+. ++.|....       
T Consensus       240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~-------  312 (641)
T KOG0772|consen  240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP-------  312 (641)
T ss_pred             EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc-------
Confidence            99975443221            23789999999999999988899999999999999875321 11111000       


Q ss_pred             cccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccC
Q 013274          241 PLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED  320 (446)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~d  320 (446)
                                                                                      ..+..-+++.++|++|
T Consensus       313 ----------------------------------------------------------------~~g~Rv~~tsC~~nrd  328 (641)
T KOG0772|consen  313 ----------------------------------------------------------------AGGKRVPVTSCAWNRD  328 (641)
T ss_pred             ----------------------------------------------------------------CCCcccCceeeecCCC
Confidence                                                                            0011234788999999


Q ss_pred             CCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEeccccc--c
Q 013274          321 GMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYE--Y  398 (446)
Q Consensus       321 g~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~--~  398 (446)
                      |+.+|+|-.||.|.+|+..+.... .                                         .+..-.+|..  .
T Consensus       329 g~~iAagc~DGSIQ~W~~~~~~v~-p-----------------------------------------~~~vk~AH~~g~~  366 (641)
T KOG0772|consen  329 GKLIAAGCLDGSIQIWDKGSRTVR-P-----------------------------------------VMKVKDAHLPGQD  366 (641)
T ss_pred             cchhhhcccCCceeeeecCCcccc-c-----------------------------------------ceEeeeccCCCCc
Confidence            999999999999999997542110 0                                         0111235766  8


Q ss_pred             eEEEEEcCCCCEEEEeeCCCcEEEeCCCCC
Q 013274          399 VNCCCFSSQDQELYTGGNDRQILVWCPSRH  428 (446)
Q Consensus       399 v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~  428 (446)
                      |+|++||+||++|+|=|.|.++|||++...
T Consensus       367 Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~  396 (641)
T KOG0772|consen  367 ITSISFSYDGNYLLSRGFDDTLKVWDLRQF  396 (641)
T ss_pred             eeEEEeccccchhhhccCCCceeeeecccc
Confidence            999999999999999999999999999743

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=2.5e-19  Score=156.08  Aligned_cols=278  Identities=16%  Similarity=0.155  Sum_probs=199.4

Q ss_pred             eEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC
Q 013274           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (446)
Q Consensus        37 ~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~  116 (446)
                      ++..+....|.+|.|+|. ...|+.+|-||++++||+.....                  .....|..++.+++|.+  .
T Consensus         7 ~l~npP~d~IS~v~f~~~-~~~LLvssWDgslrlYdv~~~~l------------------~~~~~~~~plL~c~F~d--~   65 (323)
T KOG1036|consen    7 ELENPPEDGISSVKFSPS-SSDLLVSSWDGSLRLYDVPANSL------------------KLKFKHGAPLLDCAFAD--E   65 (323)
T ss_pred             ccCCCChhceeeEEEcCc-CCcEEEEeccCcEEEEeccchhh------------------hhheecCCceeeeeccC--C
Confidence            344577889999999965 45666777999999999875421                  11135778899988875  5


Q ss_pred             cEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEE
Q 013274          117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTV  196 (446)
Q Consensus       117 ~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv  196 (446)
                      ..+++|+.||.|+.+|++++.....-.+.+.+.++.....   ...+++|+.|+.|++||.+.......+. ..+.|.++
T Consensus        66 ~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~---~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~  141 (323)
T KOG1036|consen   66 STIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYE---VGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCM  141 (323)
T ss_pred             ceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeecc---CCeEEEcccCccEEEEeccccccccccc-cCceEEEE
Confidence            6899999999999999999887666666667777776643   3468999999999999998755444444 34578888


Q ss_pred             EEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCce
Q 013274          197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGV  276 (446)
Q Consensus       197 ~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (446)
                      ..+.  . .|+.|+.|..|.+||+|+.......                                               
T Consensus       142 ~v~g--~-~LvVg~~~r~v~iyDLRn~~~~~q~-----------------------------------------------  171 (323)
T KOG1036|consen  142 DVSG--N-RLVVGTSDRKVLIYDLRNLDEPFQR-----------------------------------------------  171 (323)
T ss_pred             eccC--C-EEEEeecCceEEEEEcccccchhhh-----------------------------------------------
Confidence            8753  3 4678888999999999974311000                                               


Q ss_pred             eecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCc---eeeeeeeEEEe
Q 013274          277 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR---NTLVNFETVRL  353 (446)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~---~~~~~~~~~~~  353 (446)
                                                 +...-.-.+++|++.|++.=.+.+|-||+|.+=.+....   .....|.....
T Consensus       172 ---------------------------reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~  224 (323)
T KOG1036|consen  172 ---------------------------RESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRL  224 (323)
T ss_pred             ---------------------------ccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeec
Confidence                                       000112248999999988777889999998765544321   01112222222


Q ss_pred             ec------CCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeC
Q 013274          354 QT------SKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGN  416 (446)
Q Consensus       354 ~~------~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~  416 (446)
                      ..      -+...++|.|-..+++.++. +-|.+||+.+++.+..|..-...|..++|+.||..||.++.
T Consensus       225 ~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  225 SEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             ccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence            11      12335778887666776654 57899999999999999999889999999999999998875

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.86  E-value=2.2e-20  Score=161.44  Aligned_cols=230  Identities=18%  Similarity=0.285  Sum_probs=165.9

Q ss_pred             CccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCe------eeEEE------ec-CCc---eEEeeeccCCCCceEEE
Q 013274          101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR------VVMNF------KM-PGK---VYRTAMSPLAASHMLIA  164 (446)
Q Consensus       101 gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~------~~~~~------~~-~~~---~~~~~~~~~~~~~~~la  164 (446)
                      .|.+.|.++..-+..+++++||+.|+.|.+||++...      .+.+-      ++ .++   +..+.+.|.+.  -.+.
T Consensus        41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt--GmFt  118 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT--GMFT  118 (397)
T ss_pred             cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC--ceee
Confidence            5888999999888889999999999999999986432      11111      11 223   33445556543  3788


Q ss_pred             EeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCC--CeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcc
Q 013274          165 AGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSS--EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPL  242 (446)
Q Consensus       165 sgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~--~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~  242 (446)
                      +++-|+.++|||.++-.....|. -++.|.+-+++|-.  ..++++|..|-.|++=|+..+.+-.+              
T Consensus       119 ssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~--------------  183 (397)
T KOG4283|consen  119 SSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHT--------------  183 (397)
T ss_pred             cccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceee--------------
Confidence            99999999999999876655543 34566666666632  34567788888999999987654221              


Q ss_pred             cccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCC
Q 013274          243 LKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM  322 (446)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~  322 (446)
                                                                                    +.+|.+.|.+|.|+|...
T Consensus       184 --------------------------------------------------------------LsGHr~~vlaV~Wsp~~e  201 (397)
T KOG4283|consen  184 --------------------------------------------------------------LSGHRDGVLAVEWSPSSE  201 (397)
T ss_pred             --------------------------------------------------------------eccccCceEEEEeccCce
Confidence                                                                          347888999999999887


Q ss_pred             E-EEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEE
Q 013274          323 Y-LLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNC  401 (446)
Q Consensus       323 ~-l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~  401 (446)
                      + |+|||.||.||+||+....-   .|..++.+...                           ....+++-..|.+.|+.
T Consensus       202 ~vLatgsaDg~irlWDiRrasg---cf~~lD~hn~k---------------------------~~p~~~~n~ah~gkvng  251 (397)
T KOG4283|consen  202 WVLATGSADGAIRLWDIRRASG---CFRVLDQHNTK---------------------------RPPILKTNTAHYGKVNG  251 (397)
T ss_pred             eEEEecCCCceEEEEEeecccc---eeEEeecccCc---------------------------cCccccccccccceeee
Confidence            5 78999999999999975311   12222222110                           00112345689999999


Q ss_pred             EEEcCCCCEEEEeeCCCcEEEeCCCCCCCCCcCCCccC
Q 013274          402 CCFSSQDQELYTGGNDRQILVWCPSRHISDGVDAGPMQ  439 (446)
Q Consensus       402 ~~fSpd~~~lvtgs~D~~v~vW~~~~~~~~~~~~~~~~  439 (446)
                      ++|+.|+++|++++.|..+++|+.+.+...-...|+.-
T Consensus       252 la~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~  289 (397)
T KOG4283|consen  252 LAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPII  289 (397)
T ss_pred             eeecccchhhhhccCccceEEeecccCccccccccccc
Confidence            99999999999999999999999988876656666543

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=1.6e-20  Score=170.69  Aligned_cols=165  Identities=23%  Similarity=0.335  Sum_probs=140.5

Q ss_pred             eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (446)
Q Consensus        39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~  118 (446)
                      ..+|+..|-+|.|+..-.+.|||||.|.||++||+.++...                 ....-|.+.|.++.|+|.....
T Consensus       239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~-----------------~s~~~~~k~Vq~l~wh~~~p~~  301 (463)
T KOG0270|consen  239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPK-----------------SSITHHGKKVQTLEWHPYEPSV  301 (463)
T ss_pred             cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcc-----------------eehhhcCCceeEEEecCCCceE
Confidence            34799999999998666679999999999999999987642                 1123578899999999999999


Q ss_pred             EEEEeCCCeEEEEECCCCe-eeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC-ceeeeeeCCCCCeEEE
Q 013274          119 FVTGSYDHYVKVWDTNCTR-VVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AISQTLSGHRDGIMTV  196 (446)
Q Consensus       119 l~s~s~D~~i~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~-~~~~~l~~h~~~v~sv  196 (446)
                      |++||+|++|++.|..... .-..++..+.+..+++.+...  ..+.+++.||.|+-+|++.. +++++++.|.++|.++
T Consensus       302 LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se--~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl  379 (463)
T KOG0270|consen  302 LLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSE--NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGL  379 (463)
T ss_pred             EEeccccceEEeeeccCccccCceEEeccceEEEEecCCCc--eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceE
Confidence            9999999999999987432 234456678889999988754  46788899999999999876 8999999999999999


Q ss_pred             EEecCCCeEEEEeeCCCcEEEEEccC
Q 013274          197 EWSTSSEWILVTGGCDGAIRFWDIRR  222 (446)
Q Consensus       197 ~~s~~~~~~l~S~s~Dg~I~iWd~~~  222 (446)
                      .+++..+.+++|++.|+.|++|++..
T Consensus       380 ~~n~~~p~~l~t~s~d~~Vklw~~~~  405 (463)
T KOG0270|consen  380 SVNIQTPGLLSTASTDKVVKLWKFDV  405 (463)
T ss_pred             EecCCCCcceeeccccceEEEEeecC
Confidence            99999888999999999999999753

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=5.2e-20  Score=160.76  Aligned_cols=209  Identities=18%  Similarity=0.352  Sum_probs=149.3

Q ss_pred             ccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCee-----eE-EEecCCceEEeeeccCCCCceEEEEeeCCCcE
Q 013274           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRV-----VM-NFKMPGKVYRTAMSPLAASHMLIAAGTEDVQV  172 (446)
Q Consensus        99 ~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v  172 (446)
                      +.||+++|++++|++ ||+.|||++.|++|++|++.+-..     ++ +.+ -++...+.|+|+..  .++++.-...++
T Consensus        82 LKgH~~~vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve-~dhpT~V~FapDc~--s~vv~~~~g~~l  157 (420)
T KOG2096|consen   82 LKGHKKEVTDVAFSS-DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE-YDHPTRVVFAPDCK--SVVVSVKRGNKL  157 (420)
T ss_pred             hhccCCceeeeEEcC-CCceeEEEeCCceEEEEecchhhhhhhhHhhcccc-CCCceEEEECCCcc--eEEEEEccCCEE
Confidence            469999999999887 899999999999999999875321     11 122 24667888888653  244444456689


Q ss_pred             EEEeCCC---Cceee--------ee-eCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCC
Q 013274          173 RLCDIAS---GAISQ--------TL-SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRP  240 (446)
Q Consensus       173 ~vwd~~~---~~~~~--------~l-~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~  240 (446)
                      ++|-+..   |....        .+ +-|+-.+..+.....+++ ++|++.|.+|.||+++ +..+..++..+.      
T Consensus       158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~-imsas~dt~i~lw~lk-Gq~L~~idtnq~------  229 (420)
T KOG2096|consen  158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKY-IMSASLDTKICLWDLK-GQLLQSIDTNQS------  229 (420)
T ss_pred             EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceE-EEEecCCCcEEEEecC-Cceeeeeccccc------
Confidence            9997743   22211        11 346777888887767664 7899999999999998 555544432211      


Q ss_pred             cccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccC
Q 013274          241 PLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED  320 (446)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~d  320 (446)
                                                                                            .-...+.||+
T Consensus       230 ----------------------------------------------------------------------~n~~aavSP~  239 (420)
T KOG2096|consen  230 ----------------------------------------------------------------------SNYDAAVSPD  239 (420)
T ss_pred             ----------------------------------------------------------------------cccceeeCCC
Confidence                                                                                  1233468999


Q ss_pred             CCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceE
Q 013274          321 GMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVN  400 (446)
Q Consensus       321 g~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~  400 (446)
                      |++|++++----|++|.+--++                       ++..-              .-+....|.||...|+
T Consensus       240 GRFia~~gFTpDVkVwE~~f~k-----------------------dG~fq--------------ev~rvf~LkGH~saV~  282 (420)
T KOG2096|consen  240 GRFIAVSGFTPDVKVWEPIFTK-----------------------DGTFQ--------------EVKRVFSLKGHQSAVL  282 (420)
T ss_pred             CcEEEEecCCCCceEEEEEecc-----------------------Ccchh--------------hhhhhheeccchhhee
Confidence            9999999988889999753211                       11000              0011246789999999


Q ss_pred             EEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274          401 CCCFSSQDQELYTGGNDRQILVWCPS  426 (446)
Q Consensus       401 ~~~fSpd~~~lvtgs~D~~v~vW~~~  426 (446)
                      .++|||+.+..+|.|.||+.||||.+
T Consensus       283 ~~aFsn~S~r~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  283 AAAFSNSSTRAVTVSKDGKWRIWDTD  308 (420)
T ss_pred             eeeeCCCcceeEEEecCCcEEEeecc
Confidence            99999999999999999999999886

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=1.5e-18  Score=165.50  Aligned_cols=284  Identities=18%  Similarity=0.336  Sum_probs=203.5

Q ss_pred             cceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCc-cccEeEEEEeecCCcEEEEE
Q 013274           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGH-KYAISSAIWYPVDTGLFVTG  122 (446)
Q Consensus        44 ~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh-~~~V~~~~~~~~~~~~l~s~  122 (446)
                      ..|.+|+|+. ..+.||.+=.||.|.|||+...=..         .       ...+|| ...|-+++|.  ++.+|.|.
T Consensus        26 s~I~slA~s~-kS~~lAvsRt~g~IEiwN~~~~w~~---------~-------~vi~g~~drsIE~L~W~--e~~RLFS~   86 (691)
T KOG2048|consen   26 SEIVSLAYSH-KSNQLAVSRTDGNIEIWNLSNNWFL---------E-------PVIHGPEDRSIESLAWA--EGGRLFSS   86 (691)
T ss_pred             cceEEEEEec-cCCceeeeccCCcEEEEccCCCcee---------e-------EEEecCCCCceeeEEEc--cCCeEEee
Confidence            5799999985 4567999999999999998753110         0       111233 3567788887  46799999


Q ss_pred             eCCCeEEEEECCCCeeeEEEecCC-ceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCcee--eeeeCCCCCeEEEEEe
Q 013274          123 SYDHYVKVWDTNCTRVVMNFKMPG-KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAIS--QTLSGHRDGIMTVEWS  199 (446)
Q Consensus       123 s~D~~i~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~--~~l~~h~~~v~sv~~s  199 (446)
                      +.+|+|.-||+.+.+++..+...+ .+.+++..+.   ...++.||.||.++.++...++..  ..|..+.+.|.+++|+
T Consensus        87 g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~---~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~  163 (691)
T KOG2048|consen   87 GLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPE---NTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWN  163 (691)
T ss_pred             cCCceEEEEecccCceeEEecCCCcceeEEEeCCc---cceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEec
Confidence            999999999999999988887654 4677777764   357899999998888888888653  4566678999999999


Q ss_pred             cCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeec
Q 013274          200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQS  279 (446)
Q Consensus       200 ~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (446)
                      |++.. +++|+.||.|++||..++..+..+.......+                                          
T Consensus       164 ~~~~~-i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~------------------------------------------  200 (691)
T KOG2048|consen  164 PTGTK-IAGGSIDGVIRIWDVKSGQTLHIITMQLDRLS------------------------------------------  200 (691)
T ss_pred             CCccE-EEecccCceEEEEEcCCCceEEEeeecccccc------------------------------------------
Confidence            99875 68999999999999987765442211000000                                          


Q ss_pred             ccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCe
Q 013274          280 SVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPI  359 (446)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~  359 (446)
                                                ....--|.+|.|-.|+ .|++|..-|+|++||...+..    .+..........
T Consensus       201 --------------------------k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTL----iqS~~~h~adVl  249 (691)
T KOG2048|consen  201 --------------------------KREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTL----IQSHSCHDADVL  249 (691)
T ss_pred             --------------------------cCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcch----hhhhhhhhccee
Confidence                                      0001227888888777 578999999999999887642    112222233455


Q ss_pred             EEEEcCCCcEEEEeCCC-ceEEEEeecCc----eEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCC
Q 013274          360 QLATTQDPAVVFVPCMT-AVKAFDIWSGK----TCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP  425 (446)
Q Consensus       360 ~~~~~~~~~~~~~~~~~-~~~~~d~~~~~----~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~  425 (446)
                      .++..++..++++++.+ .+-.+...+.+    .......|...|.+++..++  .|++|+.|.++-+=..
T Consensus       250 ~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s  318 (691)
T KOG2048|consen  250 ALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSS  318 (691)
T ss_pred             EEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccc
Confidence            67777777888877654 55555554432    23455678888999999877  8999999988776543

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=1.1e-19  Score=158.59  Aligned_cols=263  Identities=18%  Similarity=0.275  Sum_probs=197.5

Q ss_pred             cccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEe
Q 013274           98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCD  176 (446)
Q Consensus        98 ~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd  176 (446)
                      .+.||+.+|+.+..-. ....+.|+|.|.+.+||.++++.++.+|. +.|.++++.|++   ...++++++.|++.+||.
T Consensus       143 e~~GHkDGiW~Vaa~~-tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~---s~~L~lTaSGD~taHIW~  218 (481)
T KOG0300|consen  143 ELEGHKDGIWHVAADS-TQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHN---SGLLLLTASGDETAHIWK  218 (481)
T ss_pred             hhcccccceeeehhhc-CCcceeecccccceeEEeeccccceeeecccccceeeEEecc---ccceEEEccCCcchHHHH
Confidence            3469999999887754 34489999999999999999999998887 457788888887   456899999999999995


Q ss_pred             C------C------------------------------CC----ceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEE
Q 013274          177 I------A------------------------------SG----AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIR  216 (446)
Q Consensus       177 ~------~------------------------------~~----~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~  216 (446)
                      .      -                              .+    .++..|.+|.+.|.+..|-..++. ++++|+|.+..
T Consensus       219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q-~vTaSWDRTAn  297 (481)
T KOG0300|consen  219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQ-MVTASWDRTAN  297 (481)
T ss_pred             HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcce-eeeeeccccce
Confidence            1      0                              00    134578899999999999888875 79999999999


Q ss_pred             EEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCC
Q 013274          217 FWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHP  296 (446)
Q Consensus       217 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (446)
                      +||..++..+..                                                                    
T Consensus       298 lwDVEtge~v~~--------------------------------------------------------------------  309 (481)
T KOG0300|consen  298 LWDVETGEVVNI--------------------------------------------------------------------  309 (481)
T ss_pred             eeeeccCceecc--------------------------------------------------------------------
Confidence            999987654322                                                                    


Q ss_pred             CcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCC
Q 013274          297 GMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMT  376 (446)
Q Consensus       297 ~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (446)
                              +.||....+-++-+|..++++|.+.|-+.|+||+...-+.   +..+..+......+.|..+..++....+.
T Consensus       310 --------LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~s---V~VFQGHtdtVTS~vF~~dd~vVSgSDDr  378 (481)
T KOG0300|consen  310 --------LTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQS---VAVFQGHTDTVTSVVFNTDDRVVSGSDDR  378 (481)
T ss_pred             --------ccCcchhccccccCCcceEEEEeccCceeEeccchhhcce---eeeecccccceeEEEEecCCceeecCCCc
Confidence                    2467777888888899999999999999999999853222   22222234455566677666665555556


Q ss_pred             ceEEEEeec-CceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCCCCCcC------CCccCccCCCC
Q 013274          377 AVKAFDIWS-GKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVD------AGPMQDQDNWS  445 (446)
Q Consensus       377 ~~~~~d~~~-~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~~~~~~------~~~~~~~~~~~  445 (446)
                      .+++||+.+ ...+.+++.. .+++.++.+..+..++--=.++.||++|+++-++-++.      --+|+.--.|.
T Consensus       379 TvKvWdLrNMRsplATIRtd-S~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~  453 (481)
T KOG0300|consen  379 TVKVWDLRNMRSPLATIRTD-SPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWL  453 (481)
T ss_pred             eEEEeeeccccCcceeeecC-CccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeecc
Confidence            899999976 3456666643 56899999988888888888899999999976654443      33455544443

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.85  E-value=3.6e-18  Score=157.65  Aligned_cols=319  Identities=17%  Similarity=0.240  Sum_probs=206.6

Q ss_pred             CCccceeEEEeecCCCCEEEEe---eCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274           41 PHKGSINSLQVDLTEERYLLSG---ASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (446)
Q Consensus        41 ~H~~~v~~l~~s~~~~~~l~s~---s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~  117 (446)
                      .-...|.+++|++.++..+..+   |.+..+.+||-+.+....   .      +        ..-...|..+.|+|.+..
T Consensus       152 ~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~---~------v--------k~sne~v~~a~FHPtd~n  214 (626)
T KOG2106|consen  152 FFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLG---P------V--------KTSNEVVFLATFHPTDPN  214 (626)
T ss_pred             cccccceeeeecccCCCceEEEecCCCccccchhhchhhhccC---c------c--------eeccceEEEEEeccCCCc
Confidence            3446799999987654333333   556678999987654321   0      0        112235667889999999


Q ss_pred             EEEEEeCCCeEEEEECCCCeeeEEEec-----CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCC
Q 013274          118 LFVTGSYDHYVKVWDTNCTRVVMNFKM-----PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDG  192 (446)
Q Consensus       118 ~l~s~s~D~~i~iWd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~  192 (446)
                      ++++++. +.+.+|+.+.+...++...     ...+.+++|.+.+.    +++|.++|.|.||+..+....++...|.+.
T Consensus       215 liit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd----viTgDS~G~i~Iw~~~~~~~~k~~~aH~gg  289 (626)
T KOG2106|consen  215 LIITCGK-GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD----VITGDSGGNILIWSKGTNRISKQVHAHDGG  289 (626)
T ss_pred             EEEEeCC-ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC----EEeecCCceEEEEeCCCceEEeEeeecCCc
Confidence            9999997 5799999988766544322     13467777776543    789999999999999888777777799999


Q ss_pred             eEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccC
Q 013274          193 IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSAN  272 (446)
Q Consensus       193 v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (446)
                      |.++..-.+|.  |+||+.|..|..|| ...+.++.++-.. +.|.                           .....+.
T Consensus       290 v~~L~~lr~Gt--llSGgKDRki~~Wd-~~y~k~r~~elPe-~~G~---------------------------iRtv~e~  338 (626)
T KOG2106|consen  290 VFSLCMLRDGT--LLSGGKDRKIILWD-DNYRKLRETELPE-QFGP---------------------------IRTVAEG  338 (626)
T ss_pred             eEEEEEecCcc--EeecCccceEEecc-ccccccccccCch-hcCC---------------------------eeEEecC
Confidence            99999988875  57899999999999 3222222111000 0000                           0000000


Q ss_pred             CCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEE
Q 013274          273 GNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR  352 (446)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~  352 (446)
                      ...+.....-+....|.+.    .+   ......+|......++.+|+...++|++.|+.+++|+ . .+.     +.-+
T Consensus       339 ~~di~vGTtrN~iL~Gt~~----~~---f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~-~k~-----~wt~  404 (626)
T KOG2106|consen  339 KGDILVGTTRNFILQGTLE----NG---FTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D-HKL-----EWTK  404 (626)
T ss_pred             CCcEEEeeccceEEEeeec----CC---ceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-C-Cce-----eEEE
Confidence            0000000000000001100    00   0112357888899999999999999999999999999 2 221     1222


Q ss_pred             eecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC
Q 013274          353 LQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH  428 (446)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~  428 (446)
                      ....+...+.+.|.+ .++++.. +..-+.|.++.. +.++.....++++|+|||||.+||-||.|+.|-|+.++..
T Consensus       405 ~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~-lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~  479 (626)
T KOG2106|consen  405 IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQD-LVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN  479 (626)
T ss_pred             EecCceeEeeccCcc-eEEEeeccceEEEEecccce-eEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCC
Confidence            223345567788888 5555543 455677777744 4445555889999999999999999999999999987644

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.85  E-value=2.9e-20  Score=165.75  Aligned_cols=166  Identities=23%  Similarity=0.425  Sum_probs=138.2

Q ss_pred             eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (446)
Q Consensus        39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~  118 (446)
                      +.+|.+.-+.|+|||.....|+||.--+.|++|...++..              .+....+.+|+..|-.+.|+|.....
T Consensus       207 ~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W--------------~vd~~Pf~gH~~SVEDLqWSptE~~v  272 (440)
T KOG0302|consen  207 FNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSW--------------KVDQRPFTGHTKSVEDLQWSPTEDGV  272 (440)
T ss_pred             ecccCccceeeecccccccccccCccccceEeeeeccCce--------------eecCccccccccchhhhccCCccCce
Confidence            4589999999999985444588888888999998877653              33445667899999999999988899


Q ss_pred             EEEEeCCCeEEEEECCCC---eeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCC---CceeeeeeCCCCC
Q 013274          119 FVTGSYDHYVKVWDTNCT---RVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS---GAISQTLSGHRDG  192 (446)
Q Consensus       119 l~s~s~D~~i~iWd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~---~~~~~~l~~h~~~  192 (446)
                      |+|||-|++|+|||+..+   .++.+-.+.+.++-+++....   .+||+|+.||.++|||++.   +.++..++-|..+
T Consensus       273 faScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~---~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~p  349 (440)
T KOG0302|consen  273 FASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRRE---PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAP  349 (440)
T ss_pred             EEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCc---ceeeecCCCceEEEEEhhhccCCCcceeEEeccCC
Confidence            999999999999999887   344444455667777776543   3899999999999999975   4577889999999


Q ss_pred             eEEEEEecCCCeEEEEeeCCCcEEEEEcc
Q 013274          193 IMTVEWSTSSEWILVTGGCDGAIRFWDIR  221 (446)
Q Consensus       193 v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~  221 (446)
                      |++|.|+|....+|++++.|.+|.|||+.
T Consensus       350 ItsieW~p~e~s~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  350 ITSIEWHPHEDSVIAASGEDNQITIWDLS  378 (440)
T ss_pred             eeEEEeccccCceEEeccCCCcEEEEEee
Confidence            99999999887788999999999999985

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.84  E-value=8.5e-18  Score=157.51  Aligned_cols=268  Identities=14%  Similarity=0.155  Sum_probs=177.9

Q ss_pred             eCCCccceeEEEeecCCCCEE-EEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274           39 VSPHKGSINSLQVDLTEERYL-LSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (446)
Q Consensus        39 ~~~H~~~v~~l~~s~~~~~~l-~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~  117 (446)
                      +..|. .+.+++|+|+ ++.+ ++++.|+.|++||+.+++...            .     ...+. .+..+.++| +++
T Consensus        27 ~~~~~-~~~~l~~~~d-g~~l~~~~~~~~~v~~~d~~~~~~~~------------~-----~~~~~-~~~~~~~~~-~g~   85 (300)
T TIGR03866        27 FPVGQ-RPRGITLSKD-GKLLYVCASDSDTIQVIDLATGEVIG------------T-----LPSGP-DPELFALHP-NGK   85 (300)
T ss_pred             EECCC-CCCceEECCC-CCEEEEEECCCCeEEEEECCCCcEEE------------e-----ccCCC-CccEEEECC-CCC
Confidence            34443 4678999974 5544 778889999999987653210            0     01111 133456666 555


Q ss_pred             EE-EEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCC-cEEEEeCCCCceeeeeeCCCCCeEE
Q 013274          118 LF-VTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV-QVRLCDIASGAISQTLSGHRDGIMT  195 (446)
Q Consensus       118 ~l-~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~-~v~vwd~~~~~~~~~l~~h~~~v~s  195 (446)
                      .+ ++++.|+.|++||+.+.+.+..+........+++++.   ..++++++.++ .+.+||.++++....+.. .....+
T Consensus        86 ~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~d---g~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~  161 (300)
T TIGR03866        86 ILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPD---GKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRF  161 (300)
T ss_pred             EEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCC---CCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccE
Confidence            55 5667789999999998887776664444566777764   34666666554 577889988876655432 234578


Q ss_pred             EEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCc
Q 013274          196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNG  275 (446)
Q Consensus       196 v~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (446)
                      +.|+|+++++++++..++.|++||++++++.+.+......                                        
T Consensus       162 ~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~----------------------------------------  201 (300)
T TIGR03866       162 AEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPG----------------------------------------  201 (300)
T ss_pred             EEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccc----------------------------------------
Confidence            9999999876667777999999999877654433210000                                        


Q ss_pred             eeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEE-EEeecCCcEEEEecCcCceeeeeeeEEEee
Q 013274          276 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL-LSAGSDSRIRLWDVESGRNTLVNFETVRLQ  354 (446)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l-~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~  354 (446)
                                        ..          .. ......++|+|+|+++ ++.+.++++.+||+.+++... .+    ..
T Consensus       202 ------------------~~----------~~-~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~-~~----~~  247 (300)
T TIGR03866       202 ------------------VH----------PE-AVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLD-YL----LV  247 (300)
T ss_pred             ------------------cc----------cc-cCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEE-EE----Ee
Confidence                              00          00 0113457899999975 444567789999998764321 11    11


Q ss_pred             cCCCeEEEEcCCCcEEEEeC--CCceEEEEeecCceEEEecccccceEEEEEcC
Q 013274          355 TSKPIQLATTQDPAVVFVPC--MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS  406 (446)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSp  406 (446)
                      ...+..++++|++..++++.  .+.+.+||+.+++.+..+... ...+.++|+|
T Consensus       248 ~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~  300 (300)
T TIGR03866       248 GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP  300 (300)
T ss_pred             CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence            23456788999999888753  468999999999999888866 5559999986

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=2.6e-19  Score=160.36  Aligned_cols=304  Identities=19%  Similarity=0.218  Sum_probs=208.3

Q ss_pred             eEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC
Q 013274           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (446)
Q Consensus        37 ~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~  116 (446)
                      +-+.+|+|.|++|.|+- ++++||||+.|..++||+++..-...      .-+++-+.    .+.|...|.|+.|.. ..
T Consensus        50 KD~~~H~GCiNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~k------~~KPI~~~----~~~H~SNIF~L~F~~-~N  117 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSH-NDRFLASGGDDMHGRVWNVDELMVRK------TPKPIGVM----EHPHRSNIFSLEFDL-EN  117 (609)
T ss_pred             hhhhhhccccceeeecc-CCeEEeecCCcceeeeechHHHHhhc------CCCCceec----cCccccceEEEEEcc-CC
Confidence            33568999999999984 68999999999999999986321110      01222222    246778999998865 56


Q ss_pred             cEEEEEeCCCeEEEEECCCCeeeEEEecC---CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc---eeeeeeCCC
Q 013274          117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMP---GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA---ISQTLSGHR  190 (446)
Q Consensus       117 ~~l~s~s~D~~i~iWd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~---~~~~l~~h~  190 (446)
                      ..+++|+.+++|.+-|+++.+.+..+...   |.+|.+..+|.   ...|++.+.++.|.+||.+...   .+..+....
T Consensus       118 ~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~---DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~  194 (609)
T KOG4227|consen  118 RFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPT---DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSG  194 (609)
T ss_pred             eeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCC---CceEEEEecCceEEEEeccCCCCCCceeeecCCC
Confidence            68999999999999999998887766654   36787887775   3478888999999999997653   233344556


Q ss_pred             CCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccc
Q 013274          191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRS  270 (446)
Q Consensus       191 ~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (446)
                      ....++.|.|-.+.+|++.+.-+-+-+||+|....  .+             ...      ..                 
T Consensus       195 ~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~--~~-------------~~~------~~-----------------  236 (609)
T KOG4227|consen  195 KNFYTAEFHPETPALILVNSETGGPNVFDRRMQAR--PV-------------YQR------SM-----------------  236 (609)
T ss_pred             ccceeeeecCCCceeEEeccccCCCCceeeccccc--hH-------------Hhh------hc-----------------
Confidence            67789999999888889999999999999986420  00             000      00                 


Q ss_pred             cCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeE
Q 013274          271 ANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFET  350 (446)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~  350 (446)
                                              ..+       +......--++.|+|.|+.+++--...-=.+||+.+.+..+..+..
T Consensus       237 ------------------------~~~-------L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~  285 (609)
T KOG4227|consen  237 ------------------------FKG-------LPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDH  285 (609)
T ss_pred             ------------------------ccc-------CcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccC
Confidence                                    000       0000011234579999998887766666678888875532211110


Q ss_pred             EEeecC-----CCeEEEEcCCCcEEEEeCC-CceEEEEeec-----------------------CceEEEecccccceEE
Q 013274          351 VRLQTS-----KPIQLATTQDPAVVFVPCM-TAVKAFDIWS-----------------------GKTCLTFRGHYEYVNC  401 (446)
Q Consensus       351 ~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~-----------------------~~~~~~l~gH~~~v~~  401 (446)
                        .+.+     ....++|..+.. +++++. -.+.+|.+-.                       .+.+..|+||...++.
T Consensus       286 --N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQ  362 (609)
T KOG4227|consen  286 --NPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQ  362 (609)
T ss_pred             --CCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccc
Confidence              0001     112234444443 444433 4788887631                       1234689999999999


Q ss_pred             EEEcCCCCEEEEeeCCCcEEEeCCCC
Q 013274          402 CCFSSQDQELYTGGNDRQILVWCPSR  427 (446)
Q Consensus       402 ~~fSpd~~~lvtgs~D~~v~vW~~~~  427 (446)
                      |.|+|-..+|++.+-.+.+|||.+.+
T Consensus       363 VRF~~H~~~l~SSGVE~~~KlWS~~r  388 (609)
T KOG4227|consen  363 VRFSQHNNLLVSSGVENSFKLWSDHR  388 (609)
T ss_pred             eeecCCcceEeccchhhheecccccc
Confidence            99999999999999999999998863

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.84  E-value=2.4e-20  Score=165.50  Aligned_cols=222  Identities=19%  Similarity=0.323  Sum_probs=162.8

Q ss_pred             eeEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCc--CCCCCCcc---ccc--c--------ceEEeccccc-
Q 013274           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRAT--DYEGGGHI---AKH--R--------SVFVVDKQHE-   99 (446)
Q Consensus        36 ~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~--~~~~~~~~---~~~--~--------~~~~~~~~~~-   99 (446)
                      ...+.+|.|.|+.|+++-   ..++|+|+|++|+.|..+-..  .+.....+   ..+  .        .+.+...+.. 
T Consensus       102 ~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~  178 (433)
T KOG0268|consen  102 IRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDN  178 (433)
T ss_pred             hheeecccCceeeEEecc---cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCC
Confidence            345789999999999963   458899999999999843211  00000000   000  0        0111111000 


Q ss_pred             -----cCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEE
Q 013274          100 -----HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRL  174 (446)
Q Consensus       100 -----~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~v  174 (446)
                           .=-...|.++.+.|....+|++|+.|++|.++|+.+.++++...+....+.++|.|   ....+.+|+.|..++.
T Consensus       179 Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP---eafnF~~a~ED~nlY~  255 (433)
T KOG0268|consen  179 PVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNP---EAFNFVAANEDHNLYT  255 (433)
T ss_pred             ccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCc---cccceeecccccccee
Confidence                 01124567888888888899999999999999999999998888877788889988   3456899999999999


Q ss_pred             EeCCCC-ceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeecccc
Q 013274          175 CDIASG-AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSL  253 (446)
Q Consensus       175 wd~~~~-~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (446)
                      +|++.- .++....+|...|++|.|||-|+. |+|||-|.+||||..+.+...-.+                        
T Consensus       256 ~DmR~l~~p~~v~~dhvsAV~dVdfsptG~E-fvsgsyDksIRIf~~~~~~SRdiY------------------------  310 (433)
T KOG0268|consen  256 YDMRNLSRPLNVHKDHVSAVMDVDFSPTGQE-FVSGSYDKSIRIFPVNHGHSRDIY------------------------  310 (433)
T ss_pred             hhhhhhcccchhhcccceeEEEeccCCCcch-hccccccceEEEeecCCCcchhhh------------------------
Confidence            999865 467788999999999999999986 799999999999987653210000                        


Q ss_pred             ccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcE
Q 013274          254 SAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRI  333 (446)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i  333 (446)
                                                               +          ...-..|.||.||.|.+|++|||.|+.|
T Consensus       311 -----------------------------------------h----------tkRMq~V~~Vk~S~Dskyi~SGSdd~nv  339 (433)
T KOG0268|consen  311 -----------------------------------------H----------TKRMQHVFCVKYSMDSKYIISGSDDGNV  339 (433)
T ss_pred             -----------------------------------------h----------HhhhheeeEEEEeccccEEEecCCCcce
Confidence                                                     0          0001238999999999999999999999


Q ss_pred             EEEecC
Q 013274          334 RLWDVE  339 (446)
Q Consensus       334 ~lWd~~  339 (446)
                      |+|-..
T Consensus       340 RlWka~  345 (433)
T KOG0268|consen  340 RLWKAK  345 (433)
T ss_pred             eeeecc
Confidence            999654

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.84  E-value=4.1e-20  Score=170.21  Aligned_cols=241  Identities=19%  Similarity=0.259  Sum_probs=174.9

Q ss_pred             cCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCC---eeeEEEecC---CceEEeeeccCCCCceEEEEeeCCCcEE
Q 013274          100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT---RVVMNFKMP---GKVYRTAMSPLAASHMLIAAGTEDVQVR  173 (446)
Q Consensus       100 ~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~~~lasgs~d~~v~  173 (446)
                      ..|..-|+++.++. ..+.++||+. +.|+|||+...   .++..+.+-   ..+.++.+.++   ...|++|+.-.++.
T Consensus       416 L~HGEvVcAvtIS~-~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pd---grtLivGGeastls  490 (705)
T KOG0639|consen  416 LAHGEVVCAVTISN-PTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPD---GRTLIVGGEASTLS  490 (705)
T ss_pred             hccCcEEEEEEecC-CcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCC---CceEEeccccceee
Confidence            35766676666665 5679999986 67999999643   222222221   22344445554   34577888888999


Q ss_pred             EEeCCCCce--eeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeecc
Q 013274          174 LCDIASGAI--SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISK  251 (446)
Q Consensus       174 vwd~~~~~~--~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (446)
                      |||+....+  ...+....-...+++.+||.+. ..++..||.|+|||+++...++.                       
T Consensus       491 iWDLAapTprikaeltssapaCyALa~spDakv-cFsccsdGnI~vwDLhnq~~Vrq-----------------------  546 (705)
T KOG0639|consen  491 IWDLAAPTPRIKAELTSSAPACYALAISPDAKV-CFSCCSDGNIAVWDLHNQTLVRQ-----------------------  546 (705)
T ss_pred             eeeccCCCcchhhhcCCcchhhhhhhcCCccce-eeeeccCCcEEEEEcccceeeec-----------------------
Confidence            999987653  2344433445678899999885 45788899999999987543332                       


Q ss_pred             ccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCC
Q 013274          252 SLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS  331 (446)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~  331 (446)
                                                                           +.+|..-+.||++++||..|-|||-|.
T Consensus       547 -----------------------------------------------------fqGhtDGascIdis~dGtklWTGGlDn  573 (705)
T KOG0639|consen  547 -----------------------------------------------------FQGHTDGASCIDISKDGTKLWTGGLDN  573 (705)
T ss_pred             -----------------------------------------------------ccCCCCCceeEEecCCCceeecCCCcc
Confidence                                                                 247888899999999999999999999


Q ss_pred             cEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCC-ceEEEEeecCceEEEecccccceEEEEEcCCCCE
Q 013274          332 RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMT-AVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQE  410 (446)
Q Consensus       332 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~  410 (446)
                      +||.||++++++.+. .   .+ .+....+..+|.+.-++++..+ .+.+... ++.....+.-|.+.|.++.|++-|+|
T Consensus       574 tvRcWDlregrqlqq-h---dF-~SQIfSLg~cP~~dWlavGMens~vevlh~-skp~kyqlhlheScVLSlKFa~cGkw  647 (705)
T KOG0639|consen  574 TVRCWDLREGRQLQQ-H---DF-SSQIFSLGYCPTGDWLAVGMENSNVEVLHT-SKPEKYQLHLHESCVLSLKFAYCGKW  647 (705)
T ss_pred             ceeehhhhhhhhhhh-h---hh-hhhheecccCCCccceeeecccCcEEEEec-CCccceeecccccEEEEEEecccCce
Confidence            999999998764321 1   11 1234455667788888877653 4444443 45667788899999999999999999


Q ss_pred             EEEeeCCCcEEEeCCCCC
Q 013274          411 LYTGGNDRQILVWCPSRH  428 (446)
Q Consensus       411 lvtgs~D~~v~vW~~~~~  428 (446)
                      +||.+.|+.+..|...-+
T Consensus       648 fvStGkDnlLnawrtPyG  665 (705)
T KOG0639|consen  648 FVSTGKDNLLNAWRTPYG  665 (705)
T ss_pred             eeecCchhhhhhccCccc
Confidence            999999999999977644

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.84  E-value=3.8e-19  Score=153.50  Aligned_cols=291  Identities=18%  Similarity=0.265  Sum_probs=192.7

Q ss_pred             eeEeCCCccceeEEEeecCCCCEEEEeeCC-------CcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeE
Q 013274           36 KEIVSPHKGSINSLQVDLTEERYLLSGASD-------SSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISS  108 (446)
Q Consensus        36 ~~~~~~H~~~v~~l~~s~~~~~~l~s~s~D-------g~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~  108 (446)
                      .+++..|.|.|+.|+-+|.+.++|+|.-.|       -.+.||.+.......   .......+..+    ...|-+.|.|
T Consensus        56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S---~~~tlE~v~~L----dteavg~i~c  128 (370)
T KOG1007|consen   56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS---NSSTLECVASL----DTEAVGKINC  128 (370)
T ss_pred             hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc---ccchhhHhhcC----CHHHhCceee
Confidence            345667889999999999888999988664       247899875432110   00001111111    1234457889


Q ss_pred             EEEeecCCcEEEEEeCCCeEEEEECCCCee-eEEEec------CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc
Q 013274          109 AIWYPVDTGLFVTGSYDHYVKVWDTNCTRV-VMNFKM------PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA  181 (446)
Q Consensus       109 ~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~  181 (446)
                      +.|.| +++.+++-. |..|.+|+++.... ......      ..+..+-.++|.... ..+++. .|+++..||+++.+
T Consensus       129 vew~P-ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdg-nqv~tt-~d~tl~~~D~RT~~  204 (370)
T KOG1007|consen  129 VEWEP-NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDG-NQVATT-SDSTLQFWDLRTMK  204 (370)
T ss_pred             EEEcC-CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCcc-ceEEEe-CCCcEEEEEccchh
Confidence            99998 788887665 88999999986544 222221      112344456665443 344543 48899999999987


Q ss_pred             eeeeee-CCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCC
Q 013274          182 ISQTLS-GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSS  260 (446)
Q Consensus       182 ~~~~l~-~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (446)
                      ....+. .|...|..+.|+|+.+++|+||+.||.|||||+|+.+.                                   
T Consensus       205 ~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~-----------------------------------  249 (370)
T KOG1007|consen  205 KNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF-----------------------------------  249 (370)
T ss_pred             hhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc-----------------------------------
Confidence            776665 68899999999999999999999999999999986320                                   


Q ss_pred             cCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCC-CEEEEeecCCcEEEEecC
Q 013274          261 VKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVE  339 (446)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~sgs~D~~i~lWd~~  339 (446)
                                                              +.+...+|.-.|.+|.|+|.. ++|+|||.|..|.+|...
T Consensus       250 ----------------------------------------pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~  289 (370)
T KOG1007|consen  250 ----------------------------------------PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCAS  289 (370)
T ss_pred             ----------------------------------------cccccCCCceEEEEEEecCccceEEEecCCCceeEEEecc
Confidence                                                    001235788899999999965 678999999999999876


Q ss_pred             cCcee-eeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCE-EEEeeCC
Q 013274          340 SGRNT-LVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQE-LYTGGND  417 (446)
Q Consensus       340 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~-lvtgs~D  417 (446)
                      +-... ...+... . .....              ....-+. ..-....+.+|.-|++.|.+++||.-..| +||-|.|
T Consensus       290 svSSE~qi~~~~d-e-se~e~--------------~dseer~-kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYD  352 (370)
T KOG1007|consen  290 SVSSEQQIEFEDD-E-SESED--------------EDSEERV-KPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYD  352 (370)
T ss_pred             ccccccccccccc-c-ccCcc--------------hhhHHhc-ccccccccccccccccceEEEeeccCCCeeEEEeccC
Confidence            53211 1111110 0 00000              0000000 00112235688899999999999987776 6799999


Q ss_pred             CcEEEeCCCCCC
Q 013274          418 RQILVWCPSRHI  429 (446)
Q Consensus       418 ~~v~vW~~~~~~  429 (446)
                      |-+.|=.+++..
T Consensus       353 GRviIs~V~r~~  364 (370)
T KOG1007|consen  353 GRVIISSVPRFL  364 (370)
T ss_pred             ceEEeecCChhh
Confidence            999887766543

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=5.5e-20  Score=177.52  Aligned_cols=162  Identities=18%  Similarity=0.383  Sum_probs=130.1

Q ss_pred             ceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeC
Q 013274           45 SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY  124 (446)
Q Consensus        45 ~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~  124 (446)
                      ++..+.|..-+.++|||++..|.|.+||+.....         .+.     .+.+..|+-.|.++.|++....+|+|||.
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r---------nk~-----l~~f~EH~Rs~~~ldfh~tep~iliSGSQ  154 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIR---------NKL-----LTVFNEHERSANKLDFHSTEPNILISGSQ  154 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCcccc---------chh-----hhHhhhhccceeeeeeccCCccEEEecCC
Confidence            4556777644678999999999999999975210         000     11335788999999999988999999999


Q ss_pred             CCeEEEEECCCCeeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc-eeeeeeCCCCCeEEEEEecCC
Q 013274          125 DHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA-ISQTLSGHRDGIMTVEWSTSS  202 (446)
Q Consensus       125 D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~-~~~~l~~h~~~v~sv~~s~~~  202 (446)
                      ||+|++||+...+-..++.. ...+..+.|+|..  ...|+++...|.+.+||++... +...+..|.++|.++.|+|+.
T Consensus       155 Dg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~--~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr  232 (839)
T KOG0269|consen  155 DGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGY--GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNR  232 (839)
T ss_pred             CceEEEEeeecccccccccccchhhhceeeccCC--CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCC
Confidence            99999999987665544443 3457788898865  4589999999999999998764 567888999999999999987


Q ss_pred             CeEEEEeeCCCcEEEEEccCC
Q 013274          203 EWILVTGGCDGAIRFWDIRRA  223 (446)
Q Consensus       203 ~~~l~S~s~Dg~I~iWd~~~~  223 (446)
                      .| ||||+.|+.|+|||+.+.
T Consensus       233 ~~-lATGGRDK~vkiWd~t~~  252 (839)
T KOG0269|consen  233 EW-LATGGRDKMVKIWDMTDS  252 (839)
T ss_pred             ce-eeecCCCccEEEEeccCC
Confidence            76 799999999999998753

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=1.2e-18  Score=152.06  Aligned_cols=282  Identities=17%  Similarity=0.246  Sum_probs=204.8

Q ss_pred             eeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCC
Q 013274           46 INSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYD  125 (446)
Q Consensus        46 v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D  125 (446)
                      -+|++|++ .|.+||.|-.||.|.|||..+-..                 ...+.+|.-+|++++|++ +|..|+|+|.|
T Consensus        26 a~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T~~i-----------------ar~lsaH~~pi~sl~WS~-dgr~LltsS~D   86 (405)
T KOG1273|consen   26 AECCQFSR-WGDYLAVGCANGRVVIYDFDTFRI-----------------ARMLSAHVRPITSLCWSR-DGRKLLTSSRD   86 (405)
T ss_pred             cceEEecc-CcceeeeeccCCcEEEEEccccch-----------------hhhhhccccceeEEEecC-CCCEeeeecCC
Confidence            68999996 688999999999999999876431                 123468999999999998 89999999999


Q ss_pred             CeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeee----CCCC-CeEEEEEec
Q 013274          126 HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS----GHRD-GIMTVEWST  200 (446)
Q Consensus       126 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~----~h~~-~v~sv~~s~  200 (446)
                      ..|++||+..|.++..+.++.++....++|...+  .+++.-.+..-.+-++..++. ..|+    +... .-.+..|.+
T Consensus        87 ~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n--~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr  163 (405)
T KOG1273|consen   87 WSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRN--KCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDR  163 (405)
T ss_pred             ceeEEEeccCCCceeEEEccCccceeeeccccCC--eEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccC
Confidence            9999999999999999999999998899886543  333333344455555554321 1111    1111 112346888


Q ss_pred             CCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecc
Q 013274          201 SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSS  280 (446)
Q Consensus       201 ~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (446)
                      .+++ +++|..-|.+.++|..+.+|+..+...                                                
T Consensus       164 ~g~y-IitGtsKGkllv~~a~t~e~vas~rit------------------------------------------------  194 (405)
T KOG1273|consen  164 RGKY-IITGTSKGKLLVYDAETLECVASFRIT------------------------------------------------  194 (405)
T ss_pred             CCCE-EEEecCcceEEEEecchheeeeeeeec------------------------------------------------
Confidence            8886 589999999999999887765544200                                                


Q ss_pred             cceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCc----CceeeeeeeEE--Ee-
Q 013274          281 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES----GRNTLVNFETV--RL-  353 (446)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~----~~~~~~~~~~~--~~-  353 (446)
                                                 -...|..+-|+..|.+|+..+.|+.||.|+++.    ++...+..+..  +. 
T Consensus       195 ---------------------------s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvV  247 (405)
T KOG1273|consen  195 ---------------------------SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVV  247 (405)
T ss_pred             ---------------------------hheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHH
Confidence                                       012377888999999999999999999999873    11111110000  00 


Q ss_pred             ecCCCeEEEEcCCCcEEEEeCC--CceEEEEeecCceEEEecccc-cceEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274          354 QTSKPIQLATTQDPAVVFVPCM--TAVKAFDIWSGKTCLTFRGHY-EYVNCCCFSSQDQELYTGGNDRQILVWCPS  426 (446)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~l~gH~-~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~  426 (446)
                      +.-.....+|+.++.+++.++.  -++.+|.-..|.+++.|.|-+ ....++.|.|-...+++- +.|+|.||...
T Consensus       248 Nk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~  322 (405)
T KOG1273|consen  248 NKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV  322 (405)
T ss_pred             hhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEee
Confidence            0012234678888888877654  367888888899999999998 556899999999999988 67899999654

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=2.4e-19  Score=151.31  Aligned_cols=169  Identities=20%  Similarity=0.285  Sum_probs=128.9

Q ss_pred             EeCCCccceeEEEee-cCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecC-
Q 013274           38 IVSPHKGSINSLQVD-LTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD-  115 (446)
Q Consensus        38 ~~~~H~~~v~~l~~s-~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~-  115 (446)
                      .+.||+|+|+.+.|. |.-|.+|||+|-||.|.||+-+.+...+               ......|+..|+++.+.|.+ 
T Consensus        51 ~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k---------------~~e~~~h~~SVNsV~waphey  115 (299)
T KOG1332|consen   51 ELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTK---------------AYEHAAHSASVNSVAWAPHEY  115 (299)
T ss_pred             EecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhh---------------hhhhhhhcccceeeccccccc
Confidence            368999999999985 5568999999999999999977664311               12335799999999998865 


Q ss_pred             CcEEEEEeCCCeEEEEECCCC-ee-eEE--EecCCceEEeeeccCCCC-----------ceEEEEeeCCCcEEEEeCCCC
Q 013274          116 TGLFVTGSYDHYVKVWDTNCT-RV-VMN--FKMPGKVYRTAMSPLAAS-----------HMLIAAGTEDVQVRLCDIASG  180 (446)
Q Consensus       116 ~~~l~s~s~D~~i~iWd~~~~-~~-~~~--~~~~~~~~~~~~~~~~~~-----------~~~lasgs~d~~v~vwd~~~~  180 (446)
                      +-.|+.++.||+|.|.+.+.. .- ...  .-+.-.++++++.|....           -..|++|+.|..|+||+.+.+
T Consensus       116 gl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~  195 (299)
T KOG1332|consen  116 GLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD  195 (299)
T ss_pred             ceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc
Confidence            446789999999999987653 11 111  112223567777765322           145999999999999999887


Q ss_pred             ce--eeeeeCCCCCeEEEEEecCC---CeEEEEeeCCCcEEEEEcc
Q 013274          181 AI--SQTLSGHRDGIMTVEWSTSS---EWILVTGGCDGAIRFWDIR  221 (446)
Q Consensus       181 ~~--~~~l~~h~~~v~sv~~s~~~---~~~l~S~s~Dg~I~iWd~~  221 (446)
                      ..  -.+|.+|.+-|+.|+|.|.-   +..|+|+|.||++.||..+
T Consensus       196 ~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~  241 (299)
T KOG1332|consen  196 SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD  241 (299)
T ss_pred             chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec
Confidence            43  34689999999999999975   3468999999999999754

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.83  E-value=1.9e-19  Score=153.51  Aligned_cols=249  Identities=21%  Similarity=0.360  Sum_probs=170.0

Q ss_pred             EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEecccccc-CccccEeEEEEeecCC
Q 013274           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEH-GHKYAISSAIWYPVDT  116 (446)
Q Consensus        38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gh~~~V~~~~~~~~~~  116 (446)
                      ++.||.++|+++.|.. . .+|.+|..-|.|++|++++.....                 +.. -|...|+.+...|  +
T Consensus         9 vLRp~~~~v~s~~fqa-~-~rL~sg~~~G~V~~w~lqt~r~~~-----------------~~r~~g~~~it~lq~~p--~   67 (323)
T KOG0322|consen    9 VLRPHSSSVTSVLFQA-N-ERLMSGLSVGIVKMWVLQTERDLP-----------------LIRLFGRLFITNLQSIP--N   67 (323)
T ss_pred             Eeccccchheehhhcc-c-hhhhcccccceEEEEEeecCccch-----------------hhhhhccceeeceeecC--C
Confidence            4569999999999975 3 459999999999999998764321                 111 2444566555554  3


Q ss_pred             cEEEEEeCCCeEEEEECCCCeeeE--EEe-----------------------cC--------------------------
Q 013274          117 GLFVTGSYDHYVKVWDTNCTRVVM--NFK-----------------------MP--------------------------  145 (446)
Q Consensus       117 ~~l~s~s~D~~i~iWd~~~~~~~~--~~~-----------------------~~--------------------------  145 (446)
                      +.+.|-+.|.++.+|++.....+.  .+.                       .+                          
T Consensus        68 d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~  147 (323)
T KOG0322|consen   68 DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSER  147 (323)
T ss_pred             cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhc
Confidence            688999999999999986522110  000                       00                          


Q ss_pred             ---CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCce----------eeeeeCCCCCeEEEEEecCCCeEEEEeeCC
Q 013274          146 ---GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI----------SQTLSGHRDGIMTVEWSTSSEWILVTGGCD  212 (446)
Q Consensus       146 ---~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~----------~~~l~~h~~~v~sv~~s~~~~~~l~S~s~D  212 (446)
                         |.+.+...........++++|..+|.|.+||+.++..          ......|..+|+++.|.+.... =++|+.+
T Consensus       148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~r-Gisgga~  226 (323)
T KOG0322|consen  148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDR-GISGGAD  226 (323)
T ss_pred             cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcC-CcCCCcc
Confidence               0111111111112235788999999999999999732          2344679999999999865443 3688888


Q ss_pred             CcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCcccc
Q 013274          213 GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQ  292 (446)
Q Consensus       213 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (446)
                      ..+..|.+....-  .+     +++.                                                  .   
T Consensus       227 dkl~~~Sl~~s~g--sl-----q~~~--------------------------------------------------e---  246 (323)
T KOG0322|consen  227 DKLVMYSLNHSTG--SL-----QIRK--------------------------------------------------E---  246 (323)
T ss_pred             ccceeeeeccccC--cc-----cccc--------------------------------------------------e---
Confidence            8899998753200  00     0000                                                  0   


Q ss_pred             ccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEE
Q 013274          293 RLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFV  372 (446)
Q Consensus       293 ~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (446)
                                 ....|. -|..+.+-||++.+||+|.|++||+|..++.++                             
T Consensus       247 -----------~~lknp-Gv~gvrIRpD~KIlATAGWD~RiRVyswrtl~p-----------------------------  285 (323)
T KOG0322|consen  247 -----------ITLKNP-GVSGVRIRPDGKILATAGWDHRIRVYSWRTLNP-----------------------------  285 (323)
T ss_pred             -----------EEecCC-CccceEEccCCcEEeecccCCcEEEEEeccCCc-----------------------------
Confidence                       001111 266778899999999999999999998876532                             


Q ss_pred             eCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCC
Q 013274          373 PCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP  425 (446)
Q Consensus       373 ~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~  425 (446)
                                      +..|.-|++.|++++||||...+|.+|.|+.|-+|++
T Consensus       286 ----------------LAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  286 ----------------LAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ----------------hhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence                            1234458999999999999999999999999999975

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.83  E-value=3.4e-19  Score=164.04  Aligned_cols=190  Identities=19%  Similarity=0.268  Sum_probs=151.9

Q ss_pred             CEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCC
Q 013274           57 RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT  136 (446)
Q Consensus        57 ~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~  136 (446)
                      .++++|+..++|+|||++....                 .....+|+..|+++.+... ..++|+++.-|.|.|..+.++
T Consensus        92 ~y~~sgG~~~~Vkiwdl~~kl~-----------------hr~lkdh~stvt~v~YN~~-DeyiAsvs~gGdiiih~~~t~  153 (673)
T KOG4378|consen   92 LYEISGGQSGCVKIWDLRAKLI-----------------HRFLKDHQSTVTYVDYNNT-DEYIASVSDGGDIIIHGTKTK  153 (673)
T ss_pred             eeeeccCcCceeeehhhHHHHH-----------------hhhccCCcceeEEEEecCC-cceeEEeccCCcEEEEecccC
Confidence            7999999999999999973221                 1223589999999988764 459999999999999999998


Q ss_pred             eeeEEEecC-Cce-EEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeee-eeCCCCCeEEEEEecCCCeEEEEeeCCC
Q 013274          137 RVVMNFKMP-GKV-YRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT-LSGHRDGIMTVEWSTSSEWILVTGGCDG  213 (446)
Q Consensus       137 ~~~~~~~~~-~~~-~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~-l~~h~~~v~sv~~s~~~~~~l~S~s~Dg  213 (446)
                      +....|.++ +.. .-+.+++..  ..+|.+++.+|.|.+||+....++.. .+.|..+...|+|+|.++.+|+|.+.|.
T Consensus       154 ~~tt~f~~~sgqsvRll~ys~sk--r~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dk  231 (673)
T KOG4378|consen  154 QKTTTFTIDSGQSVRLLRYSPSK--RFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDK  231 (673)
T ss_pred             ccccceecCCCCeEEEeeccccc--ceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccc
Confidence            888878765 433 344566643  46888999999999999988776654 4679999999999999998999999999


Q ss_pred             cEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccc
Q 013274          214 AIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQR  293 (446)
Q Consensus       214 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (446)
                      .|.+||++.......+                                                                
T Consensus       232 ki~~yD~~s~~s~~~l----------------------------------------------------------------  247 (673)
T KOG4378|consen  232 KINIYDIRSQASTDRL----------------------------------------------------------------  247 (673)
T ss_pred             eEEEeeccccccccee----------------------------------------------------------------
Confidence            9999998753211110                                                                


Q ss_pred             cCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCce
Q 013274          294 LHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRN  343 (446)
Q Consensus       294 ~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~  343 (446)
                                   .-..+.+.|+|+++|.+|+.|...|.|..||++..+.
T Consensus       248 -------------~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~  284 (673)
T KOG4378|consen  248 -------------TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA  284 (673)
T ss_pred             -------------eecCCcceeeecCCceEEEeecCCceEEEEecccCCC
Confidence                         1123578899999999999999999999999987543

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=2.8e-19  Score=163.70  Aligned_cols=193  Identities=22%  Similarity=0.347  Sum_probs=151.3

Q ss_pred             cccceeccccceeE--eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCc
Q 013274           25 HRLSTLQLSNYKEI--VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGH  102 (446)
Q Consensus        25 ~~l~~~~~~~~~~~--~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh  102 (446)
                      .+|..+.++++..+  +.+|-.+|+||.|+ +|+.+|+|||.||.|.+|.+.+-.......   ..++.     ..+.+|
T Consensus       103 g~lYlWelssG~LL~v~~aHYQ~ITcL~fs-~dgs~iiTgskDg~V~vW~l~~lv~a~~~~---~~~p~-----~~f~~H  173 (476)
T KOG0646|consen  103 GNLYLWELSSGILLNVLSAHYQSITCLKFS-DDGSHIITGSKDGAVLVWLLTDLVSADNDH---SVKPL-----HIFSDH  173 (476)
T ss_pred             CcEEEEEeccccHHHHHHhhccceeEEEEe-CCCcEEEecCCCccEEEEEEEeecccccCC---Cccce-----eeeccC
Confidence            35555666555443  56899999999998 578999999999999999975433221110   11222     344689


Q ss_pred             cccEeEEEEeec-CCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC-
Q 013274          103 KYAISSAIWYPV-DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-  180 (446)
Q Consensus       103 ~~~V~~~~~~~~-~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~-  180 (446)
                      +-+|+.+...+. ...+++|+|.|.++|+||+..+.++.++..+..+.++++.|..   ..+..|+.+|.|.+.++.+- 
T Consensus       174 tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae---~~~yiGt~~G~I~~~~~~~~~  250 (476)
T KOG0646|consen  174 TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAE---RVVYIGTEEGKIFQNLLFKLS  250 (476)
T ss_pred             cceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccc---cEEEecCCcceEEeeehhcCC
Confidence            999999877542 3458999999999999999999999999988888888888753   47889999999999887432 


Q ss_pred             ---------------ceeeeeeCCCC--CeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEee
Q 013274          181 ---------------AISQTLSGHRD--GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLD  230 (446)
Q Consensus       181 ---------------~~~~~l~~h~~--~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~  230 (446)
                                     ..+..+.||.+  +|+|++++-|+. +|+||+.||.+++||+.+..|++++.
T Consensus       251 ~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~S~Q~iRtl~  316 (476)
T KOG0646|consen  251 GQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIYSKQCIRTLQ  316 (476)
T ss_pred             cccccccccccccccceeeeeccccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecchHHHHHHHh
Confidence                           23456789988  999999999987 68999999999999999888877664

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.82  E-value=2.1e-18  Score=162.21  Aligned_cols=286  Identities=16%  Similarity=0.264  Sum_probs=182.4

Q ss_pred             eeEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecC
Q 013274           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (446)
Q Consensus        36 ~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~  115 (446)
                      ..++.+|++.|.+|+..| .|.+|+|||.||+|+||.+.++.+...            +      .-.+.|.|++|.|..
T Consensus       393 ~lvyrGHtg~Vr~iSvdp-~G~wlasGsdDGtvriWEi~TgRcvr~------------~------~~d~~I~~vaw~P~~  453 (733)
T KOG0650|consen  393 ALVYRGHTGLVRSISVDP-SGEWLASGSDDGTVRIWEIATGRCVRT------------V------QFDSEIRSVAWNPLS  453 (733)
T ss_pred             eeeEeccCCeEEEEEecC-CcceeeecCCCCcEEEEEeecceEEEE------------E------eecceeEEEEecCCC
Confidence            456789999999999997 678999999999999999998875321            1      011256677776633


Q ss_pred             CcEEEEEeCCCeEEEEECCCCe--------------------------------------eeEEEecCCceEEeeeccCC
Q 013274          116 TGLFVTGSYDHYVKVWDTNCTR--------------------------------------VVMNFKMPGKVYRTAMSPLA  157 (446)
Q Consensus       116 ~~~l~s~s~D~~i~iWd~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~  157 (446)
                      ..-++.++....+.|-+..-|.                                      +...+.+...+..+.++.. 
T Consensus       454 ~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk-  532 (733)
T KOG0650|consen  454 DLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK-  532 (733)
T ss_pred             CceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC-
Confidence            2222222222234444432110                                      1112233344555555543 


Q ss_pred             CCceEEEEeeC---CCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccc
Q 013274          158 ASHMLIAAGTE---DVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQS  234 (446)
Q Consensus       158 ~~~~~lasgs~---d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~  234 (446)
                        +.+|++.+.   ...|.|.++.......-|+-..+.|.++.|.|...++|++..  ..|||||+..+..++.+     
T Consensus       533 --GDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq--~~vRiYdL~kqelvKkL-----  603 (733)
T KOG0650|consen  533 --GDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ--RSVRIYDLSKQELVKKL-----  603 (733)
T ss_pred             --CceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec--cceEEEehhHHHHHHHH-----
Confidence              457777654   357889999877655556556788999999999887665443  57999998653221100     


Q ss_pred             cccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEE
Q 013274          235 QLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTG  314 (446)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  314 (446)
                                                                                  .           ...-.|..
T Consensus       604 ------------------------------------------------------------~-----------tg~kwiS~  612 (733)
T KOG0650|consen  604 ------------------------------------------------------------L-----------TGSKWISS  612 (733)
T ss_pred             ------------------------------------------------------------h-----------cCCeeeee
Confidence                                                                        0           01124888


Q ss_pred             EEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEE------eecCc
Q 013274          315 LKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFD------IWSGK  387 (446)
Q Consensus       315 l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d------~~~~~  387 (446)
                      |+.+|.|.-|+.|+.|+++..+|+.-...   .+..+..+....-.+++.+...++++++. +.+.++.      +....
T Consensus       613 msihp~GDnli~gs~d~k~~WfDldlssk---Pyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnp  689 (733)
T KOG0650|consen  613 MSIHPNGDNLILGSYDKKMCWFDLDLSSK---PYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNP  689 (733)
T ss_pred             eeecCCCCeEEEecCCCeeEEEEcccCcc---hhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCC
Confidence            99999999999999999999999875421   12222222222223334433334444433 3344432      22222


Q ss_pred             ---eEEEecccccc----eEEEEEcCCCCEEEEeeCCCcEEEeC
Q 013274          388 ---TCLTFRGHYEY----VNCCCFSSQDQELYTGGNDRQILVWC  424 (446)
Q Consensus       388 ---~~~~l~gH~~~----v~~~~fSpd~~~lvtgs~D~~v~vW~  424 (446)
                         .++.|+||...    |.++.|+|..-||.|++.|++||+|.
T Consensus       690 liVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT  733 (733)
T KOG0650|consen  690 LIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT  733 (733)
T ss_pred             ceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence               35789999877    99999999999999999999999995

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.81  E-value=5.9e-18  Score=162.11  Aligned_cols=288  Identities=22%  Similarity=0.271  Sum_probs=201.8

Q ss_pred             eEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeec----------CC
Q 013274           47 NSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV----------DT  116 (446)
Q Consensus        47 ~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~----------~~  116 (446)
                      -++.|++. ...|..-..|.++.|||+.+.....      +..        ...-|...|+.+...|-          -.
T Consensus       328 IA~~Fdet-~~klscVYndhSlYvWDvrD~~kvg------k~~--------s~lyHS~ciW~Ve~~p~nv~~~~~aclp~  392 (1080)
T KOG1408|consen  328 IACQFDET-TDKLSCVYNDHSLYVWDVRDVNKVG------KCS--------SMLYHSACIWDVENLPCNVHSPTAACLPR  392 (1080)
T ss_pred             eEEEecCC-CceEEEEEcCceEEEEecccccccc------cee--------eeeeccceeeeeccccccccCcccccCCc
Confidence            35678865 4568888999999999998654321      110        11235555555544431          12


Q ss_pred             cEEEEEeCCCeEEEEECCCCe---eeE-EE--------ec------------------------C--CceEEeeeccCCC
Q 013274          117 GLFVTGSYDHYVKVWDTNCTR---VVM-NF--------KM------------------------P--GKVYRTAMSPLAA  158 (446)
Q Consensus       117 ~~l~s~s~D~~i~iWd~~~~~---~~~-~~--------~~------------------------~--~~~~~~~~~~~~~  158 (446)
                      .-|+|||.|++||+||++.+.   ..+ ++        ..                        .  -.+.+++++|   
T Consensus       393 ~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp---  469 (1080)
T KOG1408|consen  393 GCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSP---  469 (1080)
T ss_pred             cceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECC---
Confidence            358999999999999997532   110 00        00                        0  0144556665   


Q ss_pred             CceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCC--CeEEEEeeCCCcEEEEEccCCceeEEeecccccc
Q 013274          159 SHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSS--EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQL  236 (446)
Q Consensus       159 ~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~--~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~  236 (446)
                      +..+||+|..-|+++|+|+..-.+...+..|..+|.++.|+...  ..+|+|++.|..|.+||....     +.      
T Consensus       470 ~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn-----y~------  538 (1080)
T KOG1408|consen  470 DGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN-----YD------  538 (1080)
T ss_pred             CcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc-----cc------
Confidence            44589999999999999999988888999999999999998642  236899999999999997531     00      


Q ss_pred             cCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEE
Q 013274          237 GRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLK  316 (446)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  316 (446)
                                                                                      ..+.+-+|...|++|.
T Consensus       539 ----------------------------------------------------------------l~qtld~HSssITsvK  554 (1080)
T KOG1408|consen  539 ----------------------------------------------------------------LVQTLDGHSSSITSVK  554 (1080)
T ss_pred             ----------------------------------------------------------------hhhhhcccccceeEEE
Confidence                                                                            0011237889999999


Q ss_pred             EccCC--CEEEEeecCCcEEEEecCcCceeeeeee--EEEeecCCCeEEEEcCCCcEEEEeCCC-ceEEEEeecCceEEE
Q 013274          317 VTEDG--MYLLSAGSDSRIRLWDVESGRNTLVNFE--TVRLQTSKPIQLATTQDPAVVFVPCMT-AVKAFDIWSGKTCLT  391 (446)
Q Consensus       317 fs~dg--~~l~sgs~D~~i~lWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~  391 (446)
                      |...|  ..++|+|.|+.|.+--....... ..+.  +........+.+...|....++.+|.+ .+++|++.+++..++
T Consensus       555 Fa~~gln~~MiscGADksimFr~~qk~~~g-~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~  633 (1080)
T KOG1408|consen  555 FACNGLNRKMISCGADKSIMFRVNQKASSG-RLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKS  633 (1080)
T ss_pred             EeecCCceEEEeccCchhhheehhccccCc-eeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeee
Confidence            99887  67999999998876533321100 0111  111112234567778887788888775 799999999999998


Q ss_pred             ec---ccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC
Q 013274          392 FR---GHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH  428 (446)
Q Consensus       392 l~---gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~  428 (446)
                      |.   +|.+..--+..-|.|-+|||...|.++.++|--.+
T Consensus       634 FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg  673 (1080)
T KOG1408|consen  634 FKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG  673 (1080)
T ss_pred             ecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc
Confidence            85   57788888999999999999999999999987543

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.81  E-value=4.9e-18  Score=160.64  Aligned_cols=167  Identities=20%  Similarity=0.325  Sum_probs=112.2

Q ss_pred             EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCcc-ccEeEEEEeecCC
Q 013274           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHK-YAISSAIWYPVDT  116 (446)
Q Consensus        38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~-~~V~~~~~~~~~~  116 (446)
                      ++.+|..-|..+.|+|-.+.+|+|||.|..|+||.+..+-..    .+ +...+.       .||. -.|-++.|+|...
T Consensus        74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q----~L-Sape~~-------~g~~~~~vE~l~fHpTaD  141 (1012)
T KOG1445|consen   74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQ----KL-SAPEID-------VGGGNVIVECLRFHPTAD  141 (1012)
T ss_pred             eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCccc----cc-CCccee-------ecCCceEEEEeecccCcC
Confidence            466899999999999888889999999999999998743210    00 111111       2333 3466777888666


Q ss_pred             cEEEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC-ceeeeeeCCCCCeE
Q 013274          117 GLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AISQTLSGHRDGIM  194 (446)
Q Consensus       117 ~~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~-~~~~~l~~h~~~v~  194 (446)
                      .++++++ -+++.|||+.+++.+.... +...+.+..++.   ++.++++++.|..|+|||-+.. ..++..++|.+.-.
T Consensus       142 gil~s~a-~g~v~i~D~stqk~~~el~~h~d~vQSa~Wse---DG~llatscKdkqirifDPRa~~~piQ~te~H~~~rd  217 (1012)
T KOG1445|consen  142 GILASGA-HGSVYITDISTQKTAVELSGHTDKVQSADWSE---DGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRD  217 (1012)
T ss_pred             ceEEecc-CceEEEEEcccCceeecccCCchhhhcccccc---CCceEeeecCCcceEEeCCccCCCccccccccccchh
Confidence            6777665 5899999999998876554 233455666665   4569999999999999999765 56777778866421


Q ss_pred             -EEEEecCCCeEEEEeeCC----CcEEEEEcc
Q 013274          195 -TVEWSTSSEWILVTGGCD----GAIRFWDIR  221 (446)
Q Consensus       195 -sv~~s~~~~~~l~S~s~D----g~I~iWd~~  221 (446)
                       -|.|-.+-.. |+|.+.+    ..|++||.+
T Consensus       218 sRv~w~Gn~~r-lisTGF~~~R~reV~~~Dtr  248 (1012)
T KOG1445|consen  218 SRVLWAGNWER-LISTGFTTKRIREVRAYDTR  248 (1012)
T ss_pred             heeeeccchhh-hhhcccchhhheeeeeeecc
Confidence             2444333223 3444433    456666654

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.81  E-value=6e-18  Score=148.59  Aligned_cols=168  Identities=20%  Similarity=0.361  Sum_probs=133.0

Q ss_pred             cccCccccEeEEEEeec----CCcEEEEEeCCCeEEEEECCCCeeeEEEe------cCCceEEeeeccCCC-CceEEEEe
Q 013274           98 HEHGHKYAISSAIWYPV----DTGLFVTGSYDHYVKVWDTNCTRVVMNFK------MPGKVYRTAMSPLAA-SHMLIAAG  166 (446)
Q Consensus        98 ~~~gh~~~V~~~~~~~~----~~~~l~s~s~D~~i~iWd~~~~~~~~~~~------~~~~~~~~~~~~~~~-~~~~lasg  166 (446)
                      ..++|+..+..+.|.+.    ..+.+||+|.+ .+.++.......++.++      .+...+.++++-+.. ++.++|.|
T Consensus        33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~  111 (385)
T KOG1034|consen   33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG  111 (385)
T ss_pred             hhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence            34578778888877532    24567777765 68888765433222222      123356666665544 46788888


Q ss_pred             eCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccc
Q 013274          167 TEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRK  246 (446)
Q Consensus       167 s~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (446)
                      +.-|.|+|.|+.++++...+.+|...|..+.|.|....+++|+|.|.+||+|++++..|+..+-.               
T Consensus       112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG---------------  176 (385)
T KOG1034|consen  112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG---------------  176 (385)
T ss_pred             cceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc---------------
Confidence            89999999999999999999999999999999999888899999999999999999888765521               


Q ss_pred             eeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEE
Q 013274          247 VSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLS  326 (446)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s  326 (446)
                                                                                ..+|.+.|.+++|+++|.+++|
T Consensus       177 ----------------------------------------------------------~egHrdeVLSvD~~~~gd~i~S  198 (385)
T KOG1034|consen  177 ----------------------------------------------------------VEGHRDEVLSVDFSLDGDRIAS  198 (385)
T ss_pred             ----------------------------------------------------------cccccCcEEEEEEcCCCCeeec
Confidence                                                                      2478889999999999999999


Q ss_pred             eecCCcEEEEecC
Q 013274          327 AGSDSRIRLWDVE  339 (446)
Q Consensus       327 gs~D~~i~lWd~~  339 (446)
                      +|.|.+|++|++.
T Consensus       199 cGmDhslk~W~l~  211 (385)
T KOG1034|consen  199 CGMDHSLKLWRLN  211 (385)
T ss_pred             cCCcceEEEEecC
Confidence            9999999999998

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.80  E-value=2.3e-17  Score=148.81  Aligned_cols=170  Identities=19%  Similarity=0.323  Sum_probs=128.6

Q ss_pred             CCc-cceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEE
Q 013274           41 PHK-GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF  119 (446)
Q Consensus        41 ~H~-~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l  119 (446)
                      -|. .+|+++.|.......|+||+.|..|+||-++++......   +   .+.  ....+.+|..+|+++.|+| ++.+|
T Consensus        10 wH~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~---~---~V~--y~s~Ls~H~~aVN~vRf~p-~gelL   80 (434)
T KOG1009|consen   10 WHDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD---M---KVE--YLSSLSRHTRAVNVVRFSP-DGELL   80 (434)
T ss_pred             ecCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc---e---eEE--EeecccCCcceeEEEEEcC-CcCee
Confidence            344 689999998765558999999999999998876532211   1   111  1123468999999988887 89999


Q ss_pred             EEEeCCCeEEEEECC--------C------CeeeEEEecC---CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCce
Q 013274          120 VTGSYDHYVKVWDTN--------C------TRVVMNFKMP---GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI  182 (446)
Q Consensus       120 ~s~s~D~~i~iWd~~--------~------~~~~~~~~~~---~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~  182 (446)
                      |||++++.|.+|-..        +      ...+....+.   ..++.+++++   ++..+++|+-|..+++||+..|..
T Consensus        81 ASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~---d~~~l~s~s~dns~~l~Dv~~G~l  157 (434)
T KOG1009|consen   81 ASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP---DSNFLVSGSVDNSVRLWDVHAGQL  157 (434)
T ss_pred             eecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC---CCceeeeeeccceEEEEEecccee
Confidence            999999999999765        1      0111111222   3356666666   456899999999999999999999


Q ss_pred             eeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCC
Q 013274          183 SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA  223 (446)
Q Consensus       183 ~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~  223 (446)
                      ...+.+|...|..++|.|-+++ +++=+.|...+..++...
T Consensus       158 ~~~~~dh~~yvqgvawDpl~qy-v~s~s~dr~~~~~~~~~~  197 (434)
T KOG1009|consen  158 LAILDDHEHYVQGVAWDPLNQY-VASKSSDRHPEGFSAKLK  197 (434)
T ss_pred             Eeeccccccccceeecchhhhh-hhhhccCcccceeeeeee
Confidence            9999999999999999999987 578888887777776543

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.80  E-value=2.2e-16  Score=154.00  Aligned_cols=372  Identities=15%  Similarity=0.223  Sum_probs=207.6

Q ss_pred             eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeec-CCc
Q 013274           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV-DTG  117 (446)
Q Consensus        39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~-~~~  117 (446)
                      ..+|.+.|.-+..-   |.+|+++-.++.+.||+........       +..+-+..    ..++. |+++ ++|. --.
T Consensus       110 ~~~~~a~v~~l~~f---Ge~lia~d~~~~l~vw~~s~~~~e~-------~l~~~~~~----~~~~~-Ital-~HP~TYLN  173 (910)
T KOG1539|consen  110 TLLHGAKVHLLLPF---GEHLIAVDISNILFVWKTSSIQEEL-------YLQSTFLK----VEGDF-ITAL-LHPSTYLN  173 (910)
T ss_pred             eccccceEEEEeee---cceEEEEEccCcEEEEEeccccccc-------cccceeee----ccCCc-eeeE-ecchhhee
Confidence            34676667666541   4578889999999999987641110       00000110    12232 5553 4442 224


Q ss_pred             EEEEEeCCCeEEEEECCCCeeeEEEecCC-ceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEE
Q 013274          118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPG-KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTV  196 (446)
Q Consensus       118 ~l~s~s~D~~i~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv  196 (446)
                      .++.|+.+|.+++|++.+++.+.+++... .+.++.-+|   --..+|.|..+|.|.++|++.++.+.+++...+.|+++
T Consensus       174 KIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsP---aLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~Vtsl  250 (910)
T KOG1539|consen  174 KIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSP---ALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSL  250 (910)
T ss_pred             eEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCC---cceEEEEeccCceEEEEEcccCcEEEEEEccccceeEE
Confidence            57889999999999999999999887533 344433333   34589999999999999999999999998667999999


Q ss_pred             EEecCCCeEEEEeeCCCcEEEEEccCCceeEEee-ccccccc------CCCcccccceeeccccccCCCCCcCCCCcccc
Q 013274          197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLD-QSQSQLG------RRPPLLKRKVSISKSLSAGQNSSVKPRAPQKR  269 (446)
Q Consensus       197 ~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (446)
                      +|..||+.+|++|+..|.+-+||+...+....+. .+...+.      .+|-......+.+-...........++...-+
T Consensus       251 SFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R  330 (910)
T KOG1539|consen  251 SFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSR  330 (910)
T ss_pred             EeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeec
Confidence            9999999999999999999999998765544332 1211111      01101100000000000000000000000000


Q ss_pred             ---ccCCCceeec-ccceeecCCccccccC------------CCcccccc---cc------cccccCeEEEEEccC----
Q 013274          270 ---SANGNGVRQS-SVGRIPAKGSVRQRLH------------PGMLSSQD---RA------TAHYGAVTGLKVTED----  320 (446)
Q Consensus       270 ---~~~~~~~~~~-~~~~~~~~~~~~~~~~------------~~~~~~~~---~~------~~h~~~v~~l~fs~d----  320 (446)
                         .+-..++++. ..+........+..+.            .+......   +.      .-...+|..++|...    
T Consensus       331 ~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~  410 (910)
T KOG1539|consen  331 GGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKE  410 (910)
T ss_pred             cCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhh
Confidence               0000000000 0000000000000000            00000000   00      000123444444321    


Q ss_pred             -CCEEEEeecCCcEEEEecCcCceeeeeeeEEEee--cCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEe---c
Q 013274          321 -GMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQ--TSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTF---R  393 (446)
Q Consensus       321 -g~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l---~  393 (446)
                       .+.++.--.+..++.|++.+.+.-...+....+.  ......++.++++...+.+.. +.+.++++.+|-....|   +
T Consensus       411 W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~  490 (910)
T KOG1539|consen  411 WDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSP  490 (910)
T ss_pred             hcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCc
Confidence             1233333445556666655432211111111111  112344666777777777644 57899999999988888   6


Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCC
Q 013274          394 GHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI  429 (446)
Q Consensus       394 gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~  429 (446)
                      .|.++|+.++.-.-++.++|++.||.++.|+..+..
T Consensus       491 ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~  526 (910)
T KOG1539|consen  491 AHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV  526 (910)
T ss_pred             cccCceeEEEecCCCceEEEccCcceEEEEecCCcc
Confidence            999999999997778899999999999999998665

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.80  E-value=1.7e-18  Score=164.08  Aligned_cols=295  Identities=18%  Similarity=0.271  Sum_probs=180.1

Q ss_pred             CCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEE
Q 013274           40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF  119 (446)
Q Consensus        40 ~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l  119 (446)
                      ..|...|..+.|.| +...||+++.|.+|++||++.....       +        .....||.+.|.+++|.+.+...|
T Consensus        97 ~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~-------G--------~~~~~GH~~SvkS~cf~~~n~~vF  160 (720)
T KOG0321|consen   97 LAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLV-------G--------GRLNLGHTGSVKSECFMPTNPAVF  160 (720)
T ss_pred             ccccceeEeeccCC-CceeEEEccCCceeeeeeeccceee-------c--------ceeecccccccchhhhccCCCcce
Confidence            36999999999987 6778999999999999999876431       1        112359999999999999999999


Q ss_pred             EEEeCCCeEEEEECCCCee--------------------e-------EEEecC-CceEE-eeeccCCCCceEEEEeeC-C
Q 013274          120 VTGSYDHYVKVWDTNCTRV--------------------V-------MNFKMP-GKVYR-TAMSPLAASHMLIAAGTE-D  169 (446)
Q Consensus       120 ~s~s~D~~i~iWd~~~~~~--------------------~-------~~~~~~-~~~~~-~~~~~~~~~~~~lasgs~-d  169 (446)
                      ++|+.|+.|.|||+.....                    .       ...... +.+.+ +.... ..+...||+++. |
T Consensus       161 ~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~-fkDe~tlaSaga~D  239 (720)
T KOG0321|consen  161 CTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVL-FKDESTLASAGAAD  239 (720)
T ss_pred             eeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEE-EeccceeeeccCCC
Confidence            9999999999999742110                    0       000000 11111 11111 123346777766 9


Q ss_pred             CcEEEEeCCCCceee--------eeeCC---CCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccC
Q 013274          170 VQVRLCDIASGAISQ--------TLSGH---RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGR  238 (446)
Q Consensus       170 ~~v~vwd~~~~~~~~--------~l~~h---~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~  238 (446)
                      +.|+|||++......        .+..|   .-.+.++...-.|.+++|+|. |+.|.+||++....-        ..+ 
T Consensus       240 ~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~s--------P~~-  309 (720)
T KOG0321|consen  240 STIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSIS--------PVA-  309 (720)
T ss_pred             cceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCcC--------chh-
Confidence            999999998764322        22233   224566666666788777777 999999999753210        000 


Q ss_pred             CCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEc
Q 013274          239 RPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVT  318 (446)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs  318 (446)
                                   .+                                 .+    ...             ..-...-..+
T Consensus       310 -------------~~---------------------------------sg----~~~-------------~sf~vks~lS  326 (720)
T KOG0321|consen  310 -------------EF---------------------------------SG----KLN-------------SSFYVKSELS  326 (720)
T ss_pred             -------------hc---------------------------------cC----ccc-------------ceeeeeeecC
Confidence                         00                                 00    000             0001112368


Q ss_pred             cCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCc-----------
Q 013274          319 EDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGK-----------  387 (446)
Q Consensus       319 ~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----------  387 (446)
                      ||+.+|+||+.|....+|.+.+.......+..... ....++.+-++...++....+..+++|++..+-           
T Consensus       327 pd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~-eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~s~  405 (720)
T KOG0321|consen  327 PDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTR-EVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEIYAADKDSI  405 (720)
T ss_pred             CCCceEeccCCCcceeeeeecCccCChhhhhCcce-EEEEEeeccccCCCceeeccCcceEEEeccCchhhccccccchh
Confidence            99999999999999999999875432221111111 111122333333444444445689999986531           


Q ss_pred             ---eEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCC
Q 013274          388 ---TCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR  427 (446)
Q Consensus       388 ---~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~  427 (446)
                         -...|.+|.-.+..+.++.-+.+....  -+..++|.-..
T Consensus       406 v~~~~~rfk~~~p~~~nv~ss~~~t~~~pR--~~~~r~~ssP~  446 (720)
T KOG0321|consen  406 VYEYSRRFKGHLPQVLNVNSSLRKTYKDPR--EGMNRISSSPV  446 (720)
T ss_pred             hhhhhhhhhccccccccccccccccccchh--hhccccccCcc
Confidence               123456777777777666544333332  56678885543

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=4e-17  Score=155.88  Aligned_cols=247  Identities=15%  Similarity=0.197  Sum_probs=183.6

Q ss_pred             ccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeee-EEEe--cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC
Q 013274          104 YAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVV-MNFK--MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG  180 (446)
Q Consensus       104 ~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~  180 (446)
                      .+|.+++++. ....||.+=.|+.|.+|++...=.. ..+.  ..+.+..++|++    ...|.+.+.+|.|.-||+.++
T Consensus        26 s~I~slA~s~-kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e----~~RLFS~g~sg~i~EwDl~~l  100 (691)
T KOG2048|consen   26 SEIVSLAYSH-KSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE----GGRLFSSGLSGSITEWDLHTL  100 (691)
T ss_pred             cceEEEEEec-cCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc----CCeEEeecCCceEEEEecccC
Confidence            5688888876 5567999999999999999764322 2222  345577888873    235778888999999999999


Q ss_pred             ceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCC
Q 013274          181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSS  260 (446)
Q Consensus       181 ~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (446)
                      +....+..-.+.|++++.+|.+. .++-|+.||.+.+.+...++.....                               
T Consensus       101 k~~~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r-------------------------------  148 (691)
T KOG2048|consen  101 KQKYNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKR-------------------------------  148 (691)
T ss_pred             ceeEEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEe-------------------------------
Confidence            99999988899999999999886 5677889996666655432210000                               


Q ss_pred             cCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCc
Q 013274          261 VKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES  340 (446)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~  340 (446)
                                                                 .+.-..+.|.+|+|+|++..|++|+.||.|++||+.+
T Consensus       149 -------------------------------------------~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~  185 (691)
T KOG2048|consen  149 -------------------------------------------SLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKS  185 (691)
T ss_pred             -------------------------------------------ecccccceEEEEEecCCccEEEecccCceEEEEEcCC
Confidence                                                       0001136699999999999999999999999999998


Q ss_pred             Cceee-eeeeEEEeecCCC---eEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeC
Q 013274          341 GRNTL-VNFETVRLQTSKP---IQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGN  416 (446)
Q Consensus       341 ~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~  416 (446)
                      +.... ......+.....+   -.+.+-.++.++...+.+.|..||-..+.+...+..|.+.|.|++-++++.+|++++.
T Consensus       186 ~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGv  265 (691)
T KOG2048|consen  186 GQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGV  265 (691)
T ss_pred             CceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccC
Confidence            76422 1111112222111   1234445555555556689999999999999999999999999999999999999999


Q ss_pred             CCcEEEeCCCCCCC
Q 013274          417 DRQILVWCPSRHIS  430 (446)
Q Consensus       417 D~~v~vW~~~~~~~  430 (446)
                      |+.|.-+...+...
T Consensus       266 d~~ii~~~~~~~~~  279 (691)
T KOG2048|consen  266 DPKIIQYSLTTNKS  279 (691)
T ss_pred             CCceEEEEecCCcc
Confidence            99999987766544

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=8.2e-18  Score=148.54  Aligned_cols=277  Identities=19%  Similarity=0.275  Sum_probs=179.8

Q ss_pred             CEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeec-CCcEEEEEeCCCeEEEEECCC
Q 013274           57 RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV-DTGLFVTGSYDHYVKVWDTNC  135 (446)
Q Consensus        57 ~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~-~~~~l~s~s~D~~i~iWd~~~  135 (446)
                      ..+|++-+.|+|++||..++..++                 .+.+|+..+..+.|.+. ....+.||+.||+||+||+..
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~-----------------~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs  103 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLE-----------------EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRS  103 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhh-----------------eecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeec
Confidence            468888899999999988765332                 23466666666777653 456789999999999999987


Q ss_pred             CeeeEEEecCCceEEeeeccCCC--CceEEEEee----CCCcEEEEeCCCCce-eee-eeCCCCCeEEEEEecCCCeEEE
Q 013274          136 TRVVMNFKMPGKVYRTAMSPLAA--SHMLIAAGT----EDVQVRLCDIASGAI-SQT-LSGHRDGIMTVEWSTSSEWILV  207 (446)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~lasgs----~d~~v~vwd~~~~~~-~~~-l~~h~~~v~sv~~s~~~~~~l~  207 (446)
                      ......+...... ...+.+++.  ...++++|+    .+-.|.+||++.... +.. ...|.+.|++|.|.|.++.+|+
T Consensus       104 ~~e~a~~~~~~~~-~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLl  182 (376)
T KOG1188|consen  104 QAESARISWTQQS-GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLL  182 (376)
T ss_pred             chhhhheeccCCC-CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEE
Confidence            6544333322211 112222222  345777775    367899999987654 444 4689999999999999999999


Q ss_pred             EeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecC
Q 013274          208 TGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAK  287 (446)
Q Consensus       208 S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (446)
                      |||.||-|.++|+.....       ..                                                     
T Consensus       183 SGSvDGLvnlfD~~~d~E-------eD-----------------------------------------------------  202 (376)
T KOG1188|consen  183 SGSVDGLVNLFDTKKDNE-------ED-----------------------------------------------------  202 (376)
T ss_pred             eecccceEEeeecCCCcc-------hh-----------------------------------------------------
Confidence            999999999999864210       00                                                     


Q ss_pred             CccccccCCCcccccccccccccCeEEEEEccCC-CEEEEeecCCcEEEEecCcCceeeeeeeEEEee-------c--CC
Q 013274          288 GSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQ-------T--SK  357 (446)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~-------~--~~  357 (446)
                       .+.            ...-|...|.++.|..++ +.|..-+-.++..+|+++.+....- ++.....       .  ..
T Consensus       203 -aL~------------~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~-~~~~~~~~~d~r~~~~~dY  268 (376)
T KOG1188|consen  203 -ALL------------HVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETW-LENPDVSADDLRKEDNCDY  268 (376)
T ss_pred             -hHH------------HhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhc-ccCccchhhhHHhhhhhhh
Confidence             000            011244568899999888 4466778899999999987653211 1100000       0  00


Q ss_pred             CeEEEEcCCCcEEEEeC--CCceEEEEee---cC---ceEEEecc-cccceEEEEEcCCCCEEEEeeCCCcEEEeCC
Q 013274          358 PIQLATTQDPAVVFVPC--MTAVKAFDIW---SG---KTCLTFRG-HYEYVNCCCFSSQDQELYTGGNDRQILVWCP  425 (446)
Q Consensus       358 ~~~~~~~~~~~~~~~~~--~~~~~~~d~~---~~---~~~~~l~g-H~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~  425 (446)
                      .+.....-+..+.+.+.  .+...++-+.   ++   +....|.| |..-|.++.|-..+.+|.||++||.+.+|..
T Consensus       269 ~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  269 VINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             eeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence            11111112233333332  2444444332   22   34456776 7778899999888999999999999999984

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=1.3e-18  Score=175.10  Aligned_cols=255  Identities=16%  Similarity=0.250  Sum_probs=185.1

Q ss_pred             cceeEEEeecCCCC---EEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEE
Q 013274           44 GSINSLQVDLTEER---YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV  120 (446)
Q Consensus        44 ~~v~~l~~s~~~~~---~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~  120 (446)
                      ..-+.|+|.+.+..   +||.|..||.|.+||...-..-....+           ..+...|++.|..+.|.+..+.+||
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~-----------la~~~~h~G~V~gLDfN~~q~nlLA  133 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEV-----------LATKSKHTGPVLGLDFNPFQGNLLA  133 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHH-----------HhhhcccCCceeeeeccccCCceee
Confidence            34578888764433   599999999999999764211000001           1233579999999999998888999


Q ss_pred             EEeCCCeEEEEECCCCeeeEEEe---cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCC--CeEE
Q 013274          121 TGSYDHYVKVWDTNCTRVVMNFK---MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD--GIMT  195 (446)
Q Consensus       121 s~s~D~~i~iWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~--~v~s  195 (446)
                      ||+.||.|.|||++..+.-.++.   ..+.+.++++..-  ...+||+++.++.+-|||++..+.+-.+..|..  .+..
T Consensus       134 SGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrk--vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~  211 (1049)
T KOG0307|consen  134 SGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRK--VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSV  211 (1049)
T ss_pred             ccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchh--hhHHhhccCCCCCceeccccCCCcccccccCCCccceee
Confidence            99999999999998644332221   2344555555432  235799999999999999999987777766555  4678


Q ss_pred             EEEecCCCeEEEEeeCC---CcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccC
Q 013274          196 VEWSTSSEWILVTGGCD---GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSAN  272 (446)
Q Consensus       196 v~~s~~~~~~l~S~s~D---g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (446)
                      ++|+|++...+++++.|   -.|.+||+|....                                               
T Consensus       212 l~WhP~~aTql~~As~dd~~PviqlWDlR~ass-----------------------------------------------  244 (1049)
T KOG0307|consen  212 LAWHPDHATQLLVASGDDSAPVIQLWDLRFASS-----------------------------------------------  244 (1049)
T ss_pred             eeeCCCCceeeeeecCCCCCceeEeecccccCC-----------------------------------------------
Confidence            99999987666777765   3699999985310                                               


Q ss_pred             CCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCC-CEEEEeecCCcEEEEecCcCceeeeeeeEE
Q 013274          273 GNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVESGRNTLVNFETV  351 (446)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~  351 (446)
                                                  +.....+|...|.+|.|++.. .+|+|++.|++|.+|+.+++..        
T Consensus       245 ----------------------------P~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEv--------  288 (1049)
T KOG0307|consen  245 ----------------------------PLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEV--------  288 (1049)
T ss_pred             ----------------------------chhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceE--------
Confidence                                        011234788889999999865 8999999999999999887531        


Q ss_pred             EeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCC-EEEEeeCCCcEEEeCCCCCCC
Q 013274          352 RLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQ-ELYTGGNDRQILVWCPSRHIS  430 (446)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~-~lvtgs~D~~v~vW~~~~~~~  430 (446)
                                                           +..+..-.+++.++.|.|-.- .++..|-||.|-|+.+.+.-.
T Consensus       289 -------------------------------------l~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~~  331 (1049)
T KOG0307|consen  289 -------------------------------------LGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTDT  331 (1049)
T ss_pred             -------------------------------------eeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCCc
Confidence                                                 223344557889999999876 677788899999998875544


Q ss_pred             C
Q 013274          431 D  431 (446)
Q Consensus       431 ~  431 (446)
                      +
T Consensus       332 ~  332 (1049)
T KOG0307|consen  332 D  332 (1049)
T ss_pred             c
Confidence            3

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.77  E-value=2.1e-16  Score=138.71  Aligned_cols=290  Identities=19%  Similarity=0.229  Sum_probs=200.2

Q ss_pred             eeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCC-CC-ccc-cccceEEeccccccCccccEeEEEEee------cCC
Q 013274           46 INSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEG-GG-HIA-KHRSVFVVDKQHEHGHKYAISSAIWYP------VDT  116 (446)
Q Consensus        46 v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~-~~-~~~-~~~~~~~~~~~~~~gh~~~V~~~~~~~------~~~  116 (446)
                      ...+.|+| ||.-|++-+.|..+.+|++....-.+. .+ ... .+..+.       ......|...+|++      ++.
T Consensus        52 ~kgckWSP-DGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r-------~~eg~tvydy~wYs~M~s~qP~t  123 (406)
T KOG2919|consen   52 LKGCKWSP-DGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYR-------YQEGETVYDYCWYSRMKSDQPST  123 (406)
T ss_pred             hccceeCC-CCceEEeecccCeeeEEecChhhcccCCCCccccccceeEE-------eccCCEEEEEEeeeccccCCCcc
Confidence            45678997 577788999999999999853221111 11 111 111111       12234577777774      467


Q ss_pred             cEEEEEeCCCeEEEEECCCCeeeEEEecCC------ceEEeeeccCCCCceEEEEeeCCCcEEEEeC-CCCce--eeee-
Q 013274          117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPG------KVYRTAMSPLAASHMLIAAGTEDVQVRLCDI-ASGAI--SQTL-  186 (446)
Q Consensus       117 ~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~-~~~~~--~~~l-  186 (446)
                      .++|+.+.|.-|++||.-+|+....+..-.      ..++++|++++   ..|.+| ....|++||+ +.|..  .... 
T Consensus       124 ~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DG---eqlfaG-ykrcirvFdt~RpGr~c~vy~t~  199 (406)
T KOG2919|consen  124 NLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDG---EQLFAG-YKRCIRVFDTSRPGRDCPVYTTV  199 (406)
T ss_pred             ceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCC---CeEeec-ccceEEEeeccCCCCCCcchhhh
Confidence            799999999999999999988776665322      24677888754   456665 4678999999 55532  1111 


Q ss_pred             ----eCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcC
Q 013274          187 ----SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVK  262 (446)
Q Consensus       187 ----~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (446)
                          .+..+-+.+++|+|....+++.|+--..+-||.-.....+.                                   
T Consensus       200 ~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~-----------------------------------  244 (406)
T KOG2919|consen  200 TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQ-----------------------------------  244 (406)
T ss_pred             hcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCcee-----------------------------------
Confidence                24577889999999887677888776666666533221111                                   


Q ss_pred             CCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeec-CCcEEEEecCcC
Q 013274          263 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS-DSRIRLWDVESG  341 (446)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~-D~~i~lWd~~~~  341 (446)
                                                               ..-+|.+-|+.|.|.+||..|.+|+. |-.|-.||++..
T Consensus       245 -----------------------------------------llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~  283 (406)
T KOG2919|consen  245 -----------------------------------------LLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS  283 (406)
T ss_pred             -----------------------------------------eecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc
Confidence                                                     12368888999999999999999865 678999999976


Q ss_pred             ceeeeeeeEEEeecCCCeEEEEcCCCcEEEEe-CCCceEEEEeec-CceEEEecccccceEEEEEcCCCCEEEEeeCCCc
Q 013274          342 RNTLVNFETVRLQTSKPIQLATTQDPAVVFVP-CMTAVKAFDIWS-GKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQ  419 (446)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~-~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~  419 (446)
                      +..+..++......+..+.+-..|++..++++ ..+.|++||+.+ +.....+..|...++.++++|--.+++|+|..  
T Consensus       284 ~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq--  361 (406)
T KOG2919|consen  284 RDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ--  361 (406)
T ss_pred             cchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc--
Confidence            55443332222223344555566778888887 557899999988 77788899999999999999999999999876  


Q ss_pred             EEEeCCC
Q 013274          420 ILVWCPS  426 (446)
Q Consensus       420 v~vW~~~  426 (446)
                       |++.-+
T Consensus       362 -r~f~~~  367 (406)
T KOG2919|consen  362 -RIFKYP  367 (406)
T ss_pred             -eeecCC
Confidence             666433

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.76  E-value=1.1e-17  Score=156.75  Aligned_cols=265  Identities=17%  Similarity=0.295  Sum_probs=163.7

Q ss_pred             eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (446)
Q Consensus        39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~  118 (446)
                      +..|...|..+.|.+. ...|++++.||++++|++++....    .-....+++     ++.+|.++|.|++..+ +++.
T Consensus       290 l~s~~d~ir~l~~~~s-ep~lit~sed~~lk~WnLqk~~~s----~~~~~epi~-----tfraH~gPVl~v~v~~-n~~~  358 (577)
T KOG0642|consen  290 LRSHDDCIRALAFHPS-EPVLITASEDGTLKLWNLQKAKKS----AEKDVEPIL-----TFRAHEGPVLCVVVPS-NGEH  358 (577)
T ss_pred             eecchhhhhhhhcCCC-CCeEEEeccccchhhhhhcccCCc----cccceeeeE-----EEecccCceEEEEecC-CceE
Confidence            4578999999999765 457999999999999999542110    011222332     4569999999987765 8999


Q ss_pred             EEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEE
Q 013274          119 FVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEW  198 (446)
Q Consensus       119 l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~  198 (446)
                      ++|||.||+|+.|++..                ...+++.....                  .....+.||.+.|+.+++
T Consensus       359 ~ysgg~Dg~I~~w~~p~----------------n~dp~ds~dp~------------------vl~~~l~Ghtdavw~l~~  404 (577)
T KOG0642|consen  359 CYSGGIDGTIRCWNLPP----------------NQDPDDSYDPS------------------VLSGTLLGHTDAVWLLAL  404 (577)
T ss_pred             EEeeccCceeeeeccCC----------------CCCcccccCcc------------------hhccceeccccceeeeee
Confidence            99999999999998741                01111100001                  223467899999999999


Q ss_pred             ecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceee
Q 013274          199 STSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQ  278 (446)
Q Consensus       199 s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (446)
                      +..... |++++.||++|+|+...... ..+...+                                             
T Consensus       405 s~~~~~-Llscs~DgTvr~w~~~~~~~-~~f~~~~---------------------------------------------  437 (577)
T KOG0642|consen  405 SSTKDR-LLSCSSDGTVRLWEPTEESP-CTFGEPK---------------------------------------------  437 (577)
T ss_pred             cccccc-eeeecCCceEEeeccCCcCc-cccCCcc---------------------------------------------
Confidence            987665 78999999999998754321 0000000                                             


Q ss_pred             cccceeecCCccccccCCCcccccccccccccCeEEEEEccCC-CEEEEeecCCcEEEE---ecCcCceeeeeeeEE---
Q 013274          279 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLW---DVESGRNTLVNFETV---  351 (446)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~sgs~D~~i~lW---d~~~~~~~~~~~~~~---  351 (446)
                                                   -.+.-.+|+|-... ...+   .+.+.+++   +++.... +..+...   
T Consensus       438 -----------------------------e~g~Plsvd~~ss~~a~~~---~s~~~~~~~~~~~ev~s~-~~~~~s~~~~  484 (577)
T KOG0642|consen  438 -----------------------------EHGYPLSVDRTSSRPAHSL---ASFRFGYTSIDDMEVVSD-LLIFESSASP  484 (577)
T ss_pred             -----------------------------ccCCcceEeeccchhHhhh---hhcccccccchhhhhhhh-eeeccccCCC
Confidence                                         00001111111100 0000   11111111   1111110 0000000   


Q ss_pred             -EeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC
Q 013274          352 -RLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH  428 (446)
Q Consensus       352 -~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~  428 (446)
                       .........+...|...+.+.+.. ..++++|..++++++....|...++++++-|+|-+|.+++.|+.|++|..+..
T Consensus       485 ~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k  563 (577)
T KOG0642|consen  485 GPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK  563 (577)
T ss_pred             cccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccch
Confidence             000001122333444455555543 57899999999999999999999999999999999999999999999988643

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.75  E-value=1e-16  Score=159.83  Aligned_cols=264  Identities=20%  Similarity=0.303  Sum_probs=178.3

Q ss_pred             ccceeEEEe-ecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccE----eEEEEeecCCc
Q 013274           43 KGSINSLQV-DLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAI----SSAIWYPVDTG  117 (446)
Q Consensus        43 ~~~v~~l~~-s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V----~~~~~~~~~~~  117 (446)
                      ...|+.|.+ +..+..++++||.||.||||+-.-...         .++-++.......++...-    .-+.|... .+
T Consensus      1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~---------~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~-~G 1178 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW---------KKPELVTAWSSLSDQLPGARGTGLVVDWQQQ-SG 1178 (1387)
T ss_pred             CCccceeeeecccchhheeeeccCceEEEeccccccc---------CCceeEEeeccccccCccCCCCCeeeehhhh-CC
Confidence            357888886 344557899999999999997432110         1122233333222221100    11234433 34


Q ss_pred             EEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc---eeeeeeCCCCC--
Q 013274          118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA---ISQTLSGHRDG--  192 (446)
Q Consensus       118 ~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~---~~~~l~~h~~~--  192 (446)
                      .|+++|+-..|||||++..+++..++......-.+++++...+.++++|..||.|++||.+...   .+...+.|++.  
T Consensus      1179 ~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~ 1258 (1387)
T KOG1517|consen 1179 HLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEP 1258 (1387)
T ss_pred             eEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCccc
Confidence            6666666889999999988888777665444444566655556799999999999999998763   46677889887  


Q ss_pred             eEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccC
Q 013274          193 IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSAN  272 (446)
Q Consensus       193 v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (446)
                      |..+.+.+.|-.-|+|||.||.|++||+|.......+.                                          
T Consensus      1259 Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~------------------------------------------ 1296 (1387)
T KOG1517|consen 1259 IVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLT------------------------------------------ 1296 (1387)
T ss_pred             ceeEEeecCCCcceeeeccCCeEEEEecccCcccccce------------------------------------------
Confidence            99999988665457999999999999998631000000                                          


Q ss_pred             CCceeecccceeecCCccccccCCCccccccccccc--cc-CeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeee
Q 013274          273 GNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAH--YG-AVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFE  349 (446)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~-~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~  349 (446)
                                                      ...|  +| .+++|..+++...+|+|+. +.|+||++......  .+.
T Consensus      1297 --------------------------------iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~--~~k 1341 (1387)
T KOG1517|consen 1297 --------------------------------IVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLN--IIK 1341 (1387)
T ss_pred             --------------------------------eeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhc--ccc
Confidence                                            0001  23 4899999999999999998 99999998753210  010


Q ss_pred             EEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecc-cccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC
Q 013274          350 TVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRG-HYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH  428 (446)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~g-H~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~  428 (446)
                      .               .                       ..|.+ -.+.+.|++|+|-.-+||.|+.|.+|.|+..+.+
T Consensus      1342 ~---------------n-----------------------~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1342 Y---------------N-----------------------PGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             c---------------C-----------------------cccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence            0               0                       00111 2345699999999999999999999999988876


Q ss_pred             CCC
Q 013274          429 ISD  431 (446)
Q Consensus       429 ~~~  431 (446)
                      ...
T Consensus      1384 ~~~ 1386 (1387)
T KOG1517|consen 1384 RLT 1386 (1387)
T ss_pred             CCC
Confidence            543

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.75  E-value=1.5e-16  Score=143.02  Aligned_cols=171  Identities=19%  Similarity=0.348  Sum_probs=137.3

Q ss_pred             EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (446)
Q Consensus        38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~  117 (446)
                      .+.||++.|..+.|+|-++..|||||.|.+|.||.+-.+-...     ....++..     +.||...|--+.|+|.-..
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~-----~ltepvv~-----L~gH~rrVg~V~wHPtA~N  145 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR-----DLTEPVVE-----LYGHQRRVGLVQWHPTAPN  145 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCccccc-----CcccceEE-----EeecceeEEEEeecccchh
Confidence            4679999999999999999999999999999999985432211     01122322     3589999999999998889


Q ss_pred             EEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCe-EEE
Q 013274          118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI-MTV  196 (446)
Q Consensus       118 ~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v-~sv  196 (446)
                      .|+|+|.|.+|.+||+.++..+.++.++..+++++|..+   +.++++.+.|..|+|||.++++.+..-.+|.+.- .-+
T Consensus       146 VLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~d---Gs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Ra  222 (472)
T KOG0303|consen  146 VLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRD---GSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARA  222 (472)
T ss_pred             hHhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccC---CceeeeecccceeEEEcCCCCcEeeecccccCCCccee
Confidence            999999999999999999998888888888999998864   4589999999999999999999988878887642 345


Q ss_pred             EEecCCCeEEEEe---eCCCcEEEEEccC
Q 013274          197 EWSTSSEWILVTG---GCDGAIRFWDIRR  222 (446)
Q Consensus       197 ~~s~~~~~~l~S~---s~Dg~I~iWd~~~  222 (446)
                      .|-.++. ++.||   ..+..+-|||..+
T Consensus       223 ifl~~g~-i~tTGfsr~seRq~aLwdp~n  250 (472)
T KOG0303|consen  223 IFLASGK-IFTTGFSRMSERQIALWDPNN  250 (472)
T ss_pred             EEeccCc-eeeeccccccccceeccCccc
Confidence            5666776 44333   2467899998754

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=3.1e-17  Score=151.09  Aligned_cols=305  Identities=21%  Similarity=0.252  Sum_probs=211.8

Q ss_pred             eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC-c
Q 013274           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT-G  117 (446)
Q Consensus        39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~-~  117 (446)
                      +.+|.|.|+.|.|+. .|..|+|||.|..|.+||...+...            +    .-..||...|....|.|..+ .
T Consensus       138 L~~H~GcVntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~~~~------------l----~f~SGH~~NvfQaKFiP~s~d~  200 (559)
T KOG1334|consen  138 LNKHKGCVNTVHFNQ-RGDVLASGSDDLQVVVWDWVSGSPK------------L----SFESGHCNNVFQAKFIPFSGDR  200 (559)
T ss_pred             ccCCCCccceeeecc-cCceeeccCccceEEeehhhccCcc------------c----ccccccccchhhhhccCCCCCc
Confidence            579999999999984 6889999999999999998654321            0    11248888888888877544 4


Q ss_pred             EEEEEeCCCeEEEEECC-CCeee---EEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceee---eeeCCC
Q 013274          118 LFVTGSYDHYVKVWDTN-CTRVV---MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ---TLSGHR  190 (446)
Q Consensus       118 ~l~s~s~D~~i~iWd~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~---~l~~h~  190 (446)
                      .+++++.||.+++=.+. ++.+.   +..++.++++.++.-|+.+  .-|.+++.|+.++-+|++++....   .-+.+.
T Consensus       201 ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp--~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~  278 (559)
T KOG1334|consen  201 TIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSP--KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADE  278 (559)
T ss_pred             CceeccccCceeeeeeccccceecceecccccCccceeeecCCCC--CcccccccccceeeeeeccCCccceeeeeccCC
Confidence            68999999999998864 33332   2334678888899888765  467888999999999998875432   223344


Q ss_pred             C---CeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCcc
Q 013274          191 D---GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQ  267 (446)
Q Consensus       191 ~---~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (446)
                      .   ...+++..|.+.+.+++++.|--+|+||.|....-       ...                               
T Consensus       279 ~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e-------~~n-------------------------------  320 (559)
T KOG1334|consen  279 KERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKE-------ENN-------------------------------  320 (559)
T ss_pred             ccceeeeeEecCCCCccccccCChhhhhhhhcccchhhc-------ccc-------------------------------
Confidence            4   56789999988888999999999999998753100       000                               


Q ss_pred             ccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCce-ee-
Q 013274          268 KRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRN-TL-  345 (446)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~-~~-  345 (446)
                                          +.+.........      ....-.|++++|+.++.-|++.-.|..|.++.-.-+.- .. 
T Consensus       321 --------------------~~~~~f~p~hl~------~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~  374 (559)
T KOG1334|consen  321 --------------------GVLDKFCPHHLV------EDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPD  374 (559)
T ss_pred             --------------------chhhhcCCcccc------ccCcccceeEEecCCccceeeeecccceEEeccccccCCCCC
Confidence                                000000000000      01122489999999988888888999999994332210 00 


Q ss_pred             --e---eeeE--EEeecC-C-CeEE-EEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEe
Q 013274          346 --V---NFET--VRLQTS-K-PIQL-ATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTG  414 (446)
Q Consensus       346 --~---~~~~--~~~~~~-~-~~~~-~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtg  414 (446)
                        .   .+..  .+.+.+ . +.-+ .+.|...+++++++ +.+=+|+-.+++++.-+.|...-|+||-=+|--..|||.
T Consensus       375 ~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsS  454 (559)
T KOG1334|consen  375 PSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASS  454 (559)
T ss_pred             CCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhcc
Confidence              0   0000  011111 1 1112 23455667777654 688899999999988888887789999999999999999


Q ss_pred             eCCCcEEEeCCC
Q 013274          415 GNDRQILVWCPS  426 (446)
Q Consensus       415 s~D~~v~vW~~~  426 (446)
                      +-|..||||.|-
T Consensus       455 Gid~DVKIWTP~  466 (559)
T KOG1334|consen  455 GIDHDVKIWTPL  466 (559)
T ss_pred             CCccceeeecCC
Confidence            999999999993

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.74  E-value=2.5e-14  Score=139.42  Aligned_cols=292  Identities=27%  Similarity=0.471  Sum_probs=200.8

Q ss_pred             EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccC-ccccEeEEEE-eecC
Q 013274           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG-HKYAISSAIW-YPVD  115 (446)
Q Consensus        38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-h~~~V~~~~~-~~~~  115 (446)
                      ....|...|.++.|.+ .+..++.++.|+.+.+|+......           .+...     .+ +...+..... .+ +
T Consensus        60 ~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~-----------~~~~~-----~~~~~~~~~~~~~~~~-~  121 (466)
T COG2319          60 LLRGHEDSITSIAFSP-DGELLLSGSSDGTIKLWDLDNGEK-----------LIKSL-----EGLHDSSVSKLALSSP-D  121 (466)
T ss_pred             eeeeccceEEEEEECC-CCcEEEEecCCCcEEEEEcCCCce-----------eEEEE-----eccCCCceeeEEEECC-C
Confidence            3568999999999986 577898999999999999875530           00001     11 1123333333 33 4


Q ss_pred             Cc-EEEEEeC-CCeEEEEECCC-CeeeEEEe-cCCceEEeeeccCCCCceEEEEeeC-CCcEEEEeCCCCceeeeeeCCC
Q 013274          116 TG-LFVTGSY-DHYVKVWDTNC-TRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTE-DVQVRLCDIASGAISQTLSGHR  190 (446)
Q Consensus       116 ~~-~l~s~s~-D~~i~iWd~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~-d~~v~vwd~~~~~~~~~l~~h~  190 (446)
                      +. .++..+. |+.+++||... ......+. +...+..+.+++...   .+++++. |+.+++|++..+..+..+.+|.
T Consensus       122 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (466)
T COG2319         122 GNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGK---LLASGSSLDGTIKLWDLRTGKPLSTLAGHT  198 (466)
T ss_pred             cceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCC---EEEecCCCCCceEEEEcCCCceEEeeccCC
Confidence            44 5555455 99999999987 44444443 345566778887543   5666665 9999999999988899999999


Q ss_pred             CCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccc
Q 013274          191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRS  270 (446)
Q Consensus       191 ~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (446)
                      ..|.++.|+|++..++++++.|+.|++||.+.+.+...                                          
T Consensus       199 ~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~------------------------------------------  236 (466)
T COG2319         199 DPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS------------------------------------------  236 (466)
T ss_pred             CceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEee------------------------------------------
Confidence            99999999988874556669999999998764332210                                          


Q ss_pred             cCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeE
Q 013274          271 ANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFET  350 (446)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~  350 (446)
                                                       ...+|.... ...|+|++.++++++.|+.+++|++.........+  
T Consensus       237 ---------------------------------~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--  280 (466)
T COG2319         237 ---------------------------------TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--  280 (466)
T ss_pred             ---------------------------------ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--
Confidence                                             011233333 22799999999999999999999998754311111  


Q ss_pred             EEeecCCCeEEEEcCCCcEEEEeC-CCceEEEEeecCceEEEec--ccccceEEEEEcCCCCEEEEe-eCCCcEEEeCCC
Q 013274          351 VRLQTSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFR--GHYEYVNCCCFSSQDQELYTG-GNDRQILVWCPS  426 (446)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~l~--gH~~~v~~~~fSpd~~~lvtg-s~D~~v~vW~~~  426 (446)
                       ..+......+.+.|++..++++. ...+++|+..+........  .|...+..+.|++++..++.+ ..|+.+++|+..
T Consensus       281 -~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  359 (466)
T COG2319         281 -SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR  359 (466)
T ss_pred             -ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecC
Confidence             11223344556777666666533 2457999888777666665  899999999994342455555 788999999887


Q ss_pred             CCC
Q 013274          427 RHI  429 (446)
Q Consensus       427 ~~~  429 (446)
                      ...
T Consensus       360 ~~~  362 (466)
T COG2319         360 TGK  362 (466)
T ss_pred             CCc
Confidence            654

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.74  E-value=1.8e-16  Score=142.47  Aligned_cols=205  Identities=21%  Similarity=0.325  Sum_probs=147.1

Q ss_pred             cCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEe--------cCCceEEeeeccCCCCceEEEEeeCCCc
Q 013274          100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK--------MPGKVYRTAMSPLAASHMLIAAGTEDVQ  171 (446)
Q Consensus       100 ~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~lasgs~d~~  171 (446)
                      -||++.|..+.|.|.+...+||||+|.+|.||.+..+...+.+.        +...+.-++++|...  +.|++++.|..
T Consensus        78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~--NVLlsag~Dn~  155 (472)
T KOG0303|consen   78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP--NVLLSAGSDNT  155 (472)
T ss_pred             cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch--hhHhhccCCce
Confidence            59999999999999999999999999999999986554332221        233456677888765  47888889999


Q ss_pred             EEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeecc
Q 013274          172 VRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISK  251 (446)
Q Consensus       172 v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (446)
                      |.+||+.+|+..-++. |.+.|.++.|+-+|.. |+|++.|..|||||.|+++.+..-                      
T Consensus       156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~-l~TtckDKkvRv~dpr~~~~v~e~----------------------  211 (472)
T KOG0303|consen  156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSL-LCTTCKDKKVRVIDPRRGTVVSEG----------------------  211 (472)
T ss_pred             EEEEeccCCceeeecC-CCCeEEEEEeccCCce-eeeecccceeEEEcCCCCcEeeec----------------------
Confidence            9999999998877777 9999999999999985 799999999999999987543211                      


Q ss_pred             ccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccC-eEEEEEccCCCEEEEe---
Q 013274          252 SLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGA-VTGLKVTEDGMYLLSA---  327 (446)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~fs~dg~~l~sg---  327 (446)
                                                                            .+|.|. -.-+.|-.+|..+-||   
T Consensus       212 ------------------------------------------------------~~heG~k~~Raifl~~g~i~tTGfsr  237 (472)
T KOG0303|consen  212 ------------------------------------------------------VAHEGAKPARAIFLASGKIFTTGFSR  237 (472)
T ss_pred             ------------------------------------------------------ccccCCCcceeEEeccCceeeecccc
Confidence                                                                  122221 1223466777755554   


Q ss_pred             ecCCcEEEEecCcCceeeeeeeEEEeecCCCeE-EEEcCCCcEEEEe--CCCceEEEEeecCc
Q 013274          328 GSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQ-LATTQDPAVVFVP--CMTAVKAFDIWSGK  387 (446)
Q Consensus       328 s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~d~~~~~  387 (446)
                      -+++.+-+||...-.... .+..+  ..+..+. ..+.+|..++++.  ++..+|.+.+.+..
T Consensus       238 ~seRq~aLwdp~nl~eP~-~~~el--DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  238 MSERQIALWDPNNLEEPI-ALQEL--DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             ccccceeccCcccccCcc-eeEEe--ccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            357889999987643322 22222  2333333 4455666677665  34678888887655

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.74  E-value=1e-14  Score=138.94  Aligned_cols=280  Identities=13%  Similarity=0.206  Sum_probs=169.3

Q ss_pred             EEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEE-eCCCeEEEEECC-C
Q 013274           58 YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG-SYDHYVKVWDTN-C  135 (446)
Q Consensus        58 ~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~-s~D~~i~iWd~~-~  135 (446)
                      +.++.+.|++|.+||+.+.....   .      +..+      .+.+....+.++| ++++|+.+ ..++.|.+|++. +
T Consensus         4 ~y~~~~~~~~I~~~~~~~~g~l~---~------~~~~------~~~~~~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~   67 (330)
T PRK11028          4 VYIASPESQQIHVWNLNHEGALT---L------LQVV------DVPGQVQPMVISP-DKRHLYVGVRPEFRVLSYRIADD   67 (330)
T ss_pred             EEEEcCCCCCEEEEEECCCCcee---e------eeEE------ecCCCCccEEECC-CCCEEEEEECCCCcEEEEEECCC
Confidence            34556789999999996321100   0      0000      1112233456665 77777655 458999999986 3


Q ss_pred             Cee--eEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCC-Cc---eeeeeeCCCCCeEEEEEecCCCeEEEEe
Q 013274          136 TRV--VMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS-GA---ISQTLSGHRDGIMTVEWSTSSEWILVTG  209 (446)
Q Consensus       136 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~-~~---~~~~l~~h~~~v~sv~~s~~~~~~l~S~  209 (446)
                      +..  +......+....+++.+..  ..++++...++.|.+||+++ +.   .+..+.+ .....+++|+|++++++++.
T Consensus        68 g~l~~~~~~~~~~~p~~i~~~~~g--~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~  144 (330)
T PRK11028         68 GALTFAAESPLPGSPTHISTDHQG--RFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPC  144 (330)
T ss_pred             CceEEeeeecCCCCceEEEECCCC--CEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCCCCCEEEEee
Confidence            332  2333344455566777643  23444555688999999974 32   2233333 23456788999999877888


Q ss_pred             eCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCc
Q 013274          210 GCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGS  289 (446)
Q Consensus       210 s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (446)
                      ..++.|.+||+.+.+.+....   ..                                                      
T Consensus       145 ~~~~~v~v~d~~~~g~l~~~~---~~------------------------------------------------------  167 (330)
T PRK11028        145 LKEDRIRLFTLSDDGHLVAQE---PA------------------------------------------------------  167 (330)
T ss_pred             CCCCEEEEEEECCCCcccccC---CC------------------------------------------------------
Confidence            888999999987532110000   00                                                      


Q ss_pred             cccccCCCcccccccccccccCeEEEEEccCCCEEEEeec-CCcEEEEecCcCceeeeeeeEEEee------cCCCeEEE
Q 013274          290 VRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS-DSRIRLWDVESGRNTLVNFETVRLQ------TSKPIQLA  362 (446)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~-D~~i~lWd~~~~~~~~~~~~~~~~~------~~~~~~~~  362 (446)
                       .....          .  ......++|+|||++|.+... +++|.+|++......+.....+...      ...+..+.
T Consensus       168 -~~~~~----------~--g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~  234 (330)
T PRK11028        168 -EVTTV----------E--GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIH  234 (330)
T ss_pred             -ceecC----------C--CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEE
Confidence             00000          0  012456899999999876655 9999999997421111111111110      11223477


Q ss_pred             EcCCCcEEEEeCC--CceEEEEeecCceEEEeccccc---ceEEEEEcCCCCEEEEeeC-CCcEEEeCCC
Q 013274          363 TTQDPAVVFVPCM--TAVKAFDIWSGKTCLTFRGHYE---YVNCCCFSSQDQELYTGGN-DRQILVWCPS  426 (446)
Q Consensus       363 ~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~l~gH~~---~v~~~~fSpd~~~lvtgs~-D~~v~vW~~~  426 (446)
                      ++|++..++++..  +.+.+|++.+.....++.+|..   ....++|+|||++|+++.. +++|.||..+
T Consensus       235 ~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        235 ITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             ECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            8899998888743  5789999966543334444432   4568999999999997665 8999999764

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.73  E-value=1.8e-16  Score=137.25  Aligned_cols=267  Identities=19%  Similarity=0.352  Sum_probs=171.4

Q ss_pred             cceeEEEee--cCCCCEEEEeeCC----CcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecC--
Q 013274           44 GSINSLQVD--LTEERYLLSGASD----SSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD--  115 (446)
Q Consensus        44 ~~v~~l~~s--~~~~~~l~s~s~D----g~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~--  115 (446)
                      -.++++.|+  ++....|+-||.-    ..|.|--+.....     ++        ++ .....|.++++.+.|.|..  
T Consensus        45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~-----e~--------~~-~a~fd~~YP~tK~~wiPd~~g  110 (364)
T KOG0290|consen   45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSG-----EL--------VE-DANFDHPYPVTKLMWIPDSKG  110 (364)
T ss_pred             CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCC-----ce--------ec-cCCCCCCCCccceEecCCccc
Confidence            357788886  2234467777642    3455554432110     00        00 1114788999999998743  


Q ss_pred             --CcEEEEEeCCCeEEEEECCC--CeeeEEEe--------cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc--
Q 013274          116 --TGLFVTGSYDHYVKVWDTNC--TRVVMNFK--------MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA--  181 (446)
Q Consensus       116 --~~~l~s~s~D~~i~iWd~~~--~~~~~~~~--------~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~--  181 (446)
                        .++|||+|+  .+|+|.+..  .+......        ......++.+...  +..++.++|-|.+..|||++++.  
T Consensus       111 ~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~--dp~~igtSSiDTTCTiWdie~~~~~  186 (364)
T KOG0290|consen  111 VYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEV--DPNLIGTSSIDTTCTIWDIETGVSG  186 (364)
T ss_pred             cCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccC--CcceeEeecccCeEEEEEEeecccc
Confidence              257887774  799999863  22211111        1122233333322  34589999999999999999873  


Q ss_pred             -eeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCC
Q 013274          182 -ISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSS  260 (446)
Q Consensus       182 -~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (446)
                       ...+|-.|.++|..|+|..++..+|+|.+.||.+|++|+|....-.++....                           
T Consensus       187 ~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p---------------------------  239 (364)
T KOG0290|consen  187 TVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDP---------------------------  239 (364)
T ss_pred             ceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCC---------------------------
Confidence             4677889999999999999888899999999999999998643221111000                           


Q ss_pred             cCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEcc-CCCEEEEeecCC-cEEEEec
Q 013274          261 VKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE-DGMYLLSAGSDS-RIRLWDV  338 (446)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~sgs~D~-~i~lWd~  338 (446)
                                                                    .-..+..-|++++ |-+|+||-..|. .|.+-|+
T Consensus       240 ----------------------------------------------~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDi  273 (364)
T KOG0290|consen  240 ----------------------------------------------SPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDI  273 (364)
T ss_pred             ----------------------------------------------CCCCcceeeccCcCCchHHhhhhcCCceEEEEEe
Confidence                                                          0011233445554 345666554443 2444444


Q ss_pred             CcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCC-CCEEEEeeCC
Q 013274          339 ESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQ-DQELYTGGND  417 (446)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd-~~~lvtgs~D  417 (446)
                      +.                                            ....+..|++|.+.|+.++|.|. ...|+||+.|
T Consensus       274 R~--------------------------------------------P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD  309 (364)
T KOG0290|consen  274 RV--------------------------------------------PCTPVARLRNHQASVNGIAWAPHSSSHICTAGDD  309 (364)
T ss_pred             cC--------------------------------------------CCcceehhhcCcccccceEecCCCCceeeecCCc
Confidence            32                                            12335678999999999999997 4679999999


Q ss_pred             CcEEEeCCCCCCC-------CCcCCCccCccCCCC
Q 013274          418 RQILVWCPSRHIS-------DGVDAGPMQDQDNWS  445 (446)
Q Consensus       418 ~~v~vW~~~~~~~-------~~~~~~~~~~~~~~~  445 (446)
                      +++.+||++....       ..+-+|-++.|..|+
T Consensus       310 ~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws  344 (364)
T KOG0290|consen  310 CQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWS  344 (364)
T ss_pred             ceEEEEecccccccCCCCchhhhhccceeeeeeec
Confidence            9999999975433       235578888888886

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.72  E-value=4.8e-14  Score=137.41  Aligned_cols=287  Identities=28%  Similarity=0.510  Sum_probs=201.0

Q ss_pred             EeCCCccceeEEEeecCCCCEEEEeeC-CCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC
Q 013274           38 IVSPHKGSINSLQVDLTEERYLLSGAS-DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (446)
Q Consensus        38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~-Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~  116 (446)
                      .+..|...|+.++|+| ++.++++++. |+.+++|++.....            +     ....+|...|.++.+.| ++
T Consensus       150 ~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------------~-----~~~~~~~~~v~~~~~~~-~~  210 (466)
T COG2319         150 TLEGHSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRTGKP------------L-----STLAGHTDPVSSLAFSP-DG  210 (466)
T ss_pred             EEecCcccEEEEEECC-CCCEEEecCCCCCceEEEEcCCCce------------E-----EeeccCCCceEEEEEcC-Cc
Confidence            4568999999999997 5668888886 99999999875321            1     11235888999999985 66


Q ss_pred             c-EEEEEeCCCeEEEEECCCCeeeE-EEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCce-eeeeeCCCCCe
Q 013274          117 G-LFVTGSYDHYVKVWDTNCTRVVM-NFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI-SQTLSGHRDGI  193 (446)
Q Consensus       117 ~-~l~s~s~D~~i~iWd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~-~~~l~~h~~~v  193 (446)
                      . .+++++.|++|++||...+..+. .+..........+++..   .++++++.|+.+++||+..... ...+.+|...+
T Consensus       211 ~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v  287 (466)
T COG2319         211 GLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDG---SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSV  287 (466)
T ss_pred             ceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCC---CEEEEecCCCcEEEeeecCCCcEEEEEecCCccE
Confidence            5 66666999999999988666665 33322221111455543   5677899999999999987664 44447889999


Q ss_pred             EEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCC
Q 013274          194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANG  273 (446)
Q Consensus       194 ~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (446)
                      .++.|.|++.. +++++.|+.+++||++.........                                           
T Consensus       288 ~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~-------------------------------------------  323 (466)
T COG2319         288 LSVAFSPDGKL-LASGSSDGTVRLWDLETGKLLSSLT-------------------------------------------  323 (466)
T ss_pred             EEEEECCCCCE-EEEeeCCCcEEEEEcCCCceEEEee-------------------------------------------
Confidence            99999997765 5668888999999887643221110                                           


Q ss_pred             CceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEe-ecCCcEEEEecCcCceeeeeeeEEE
Q 013274          274 NGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSA-GSDSRIRLWDVESGRNTLVNFETVR  352 (446)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sg-s~D~~i~lWd~~~~~~~~~~~~~~~  352 (446)
                                                     ...|...+..+.|.+++..++.+ ..|+.+++|++.... ...   ...
T Consensus       324 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~---~~~  368 (466)
T COG2319         324 -------------------------------LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK-PLK---TLE  368 (466)
T ss_pred             -------------------------------ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc-eeE---Eec
Confidence                                           01344457888884343555555 688999999988764 111   111


Q ss_pred             eecCCCeEEEEcCCCcEEEE--eCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCC
Q 013274          353 LQTSKPIQLATTQDPAVVFV--PCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR  427 (446)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~  427 (446)
                      . ......+.+.+ ....+.  .....+.+|+.........+..+...+..+.+++++..+++++.+.++++|+...
T Consensus       369 ~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         369 G-HSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             C-CceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence            0 11123444545 322332  3446789999988877776666657899999999999999999999999999877

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=3.6e-17  Score=164.94  Aligned_cols=212  Identities=19%  Similarity=0.351  Sum_probs=163.9

Q ss_pred             CCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEE
Q 013274           40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF  119 (446)
Q Consensus        40 ~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l  119 (446)
                      .-|+|.|..|.|++..+++||||+.||.|.|||+++.+..-..+               ...-...|.++.|......+|
T Consensus       113 ~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~---------------~~~~~~eI~~lsWNrkvqhIL  177 (1049)
T KOG0307|consen  113 SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG---------------SQAPPSEIKCLSWNRKVSHIL  177 (1049)
T ss_pred             cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC---------------CCCCcccceEeccchhhhHHh
Confidence            46999999999998878899999999999999998744321100               112456788999987777899


Q ss_pred             EEEeCCCeEEEEECCCCeeeEEEecCCc---eEEeeeccCCCCceEEEEeeC-CCcEEEEeCCCC-ceeeeeeCCCCCeE
Q 013274          120 VTGSYDHYVKVWDTNCTRVVMNFKMPGK---VYRTAMSPLAASHMLIAAGTE-DVQVRLCDIASG-AISQTLSGHRDGIM  194 (446)
Q Consensus       120 ~s~s~D~~i~iWd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~lasgs~-d~~v~vwd~~~~-~~~~~l~~h~~~v~  194 (446)
                      +|++.++.+-|||++..+.+..+...+.   +..+.|+|......++|+... .-.|.+||++.. ..++++.+|+..|.
T Consensus       178 AS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~Gil  257 (1049)
T KOG0307|consen  178 ASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGIL  257 (1049)
T ss_pred             hccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccccccee
Confidence            9999999999999998877776665443   567888887655444444332 237899999865 46788899999999


Q ss_pred             EEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCC
Q 013274          195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGN  274 (446)
Q Consensus       195 sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (446)
                      ++.|++.+..+|+|++.|+.|..|+..+++.+..+-                                            
T Consensus       258 slsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p--------------------------------------------  293 (1049)
T KOG0307|consen  258 SLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP--------------------------------------------  293 (1049)
T ss_pred             eeccCCCCchhhhcccCCCCeeEecCCCceEeeecC--------------------------------------------
Confidence            999999987788999999999999998875443220                                            


Q ss_pred             ceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCC-EEEEeecCCcEEEEecCcCc
Q 013274          275 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM-YLLSAGSDSRIRLWDVESGR  342 (446)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~sgs~D~~i~lWd~~~~~  342 (446)
                                                      ....++..+.|.|..- .++..+-||.|-|+.+.+..
T Consensus       294 --------------------------------~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  294 --------------------------------AQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             --------------------------------CCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence                                            0123577788988654 77888999999999988754

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=1.9e-14  Score=121.83  Aligned_cols=172  Identities=19%  Similarity=0.338  Sum_probs=117.5

Q ss_pred             eeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCC
Q 013274           46 INSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYD  125 (446)
Q Consensus        46 v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D  125 (446)
                      |++-+++|+ +++|+.|+.+|+|.+..++.-.....  .-.+...+ +    .+.+|.++|+.++++.   ..|++|++ 
T Consensus        13 vf~qa~sp~-~~~l~agn~~G~iav~sl~sl~s~sa--~~~gk~~i-v----~eqahdgpiy~~~f~d---~~Lls~gd-   80 (325)
T KOG0649|consen   13 VFAQAISPS-KQYLFAGNLFGDIAVLSLKSLDSGSA--EPPGKLKI-V----PEQAHDGPIYYLAFHD---DFLLSGGD-   80 (325)
T ss_pred             HHHHhhCCc-ceEEEEecCCCeEEEEEehhhhcccc--CCCCCcce-e----eccccCCCeeeeeeeh---hheeeccC-
Confidence            555567764 78999999999999998864321110  00111111 1    2368999999999973   47888875 


Q ss_pred             CeEEEEECCCCe------eeEEEecCC--------ceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCC
Q 013274          126 HYVKVWDTNCTR------VVMNFKMPG--------KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD  191 (446)
Q Consensus       126 ~~i~iWd~~~~~------~~~~~~~~~--------~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~  191 (446)
                      |.|+=|.-+...      .+.....+-        .++.+.+.|..  +.++.+| .|+.++-||+++|+..+.++||++
T Consensus        81 G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e--nSi~~Ag-GD~~~y~~dlE~G~i~r~~rGHtD  157 (325)
T KOG0649|consen   81 GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE--NSILFAG-GDGVIYQVDLEDGRIQREYRGHTD  157 (325)
T ss_pred             ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC--CcEEEec-CCeEEEEEEecCCEEEEEEcCCcc
Confidence            999998643211      111111111        23444444432  2344444 699999999999999999999999


Q ss_pred             CeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeeccc
Q 013274          192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQ  233 (446)
Q Consensus       192 ~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~  233 (446)
                      .|-+|.--..... +.||++||++|+||++++++++.++.+.
T Consensus       158 YvH~vv~R~~~~q-ilsG~EDGtvRvWd~kt~k~v~~ie~yk  198 (325)
T KOG0649|consen  158 YVHSVVGRNANGQ-ILSGAEDGTVRVWDTKTQKHVSMIEPYK  198 (325)
T ss_pred             eeeeeeecccCcc-eeecCCCccEEEEeccccceeEEecccc
Confidence            9999987333333 5799999999999999999998886544

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=1.7e-15  Score=132.24  Aligned_cols=236  Identities=18%  Similarity=0.315  Sum_probs=152.7

Q ss_pred             eCCCccceeEEEeecC-CCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecC-C
Q 013274           39 VSPHKGSINSLQVDLT-EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD-T  116 (446)
Q Consensus        39 ~~~H~~~v~~l~~s~~-~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~-~  116 (446)
                      -+.|.++|..+.|.++ -|+.+|++|.|+++.||.-.... .+..    +.+-+.   ......-+..|+.+.|.|.. |
T Consensus        55 Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~-~~~~----~~~Wv~---~ttl~DsrssV~DV~FaP~hlG  126 (361)
T KOG2445|consen   55 WRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKS-EEAH----GRRWVR---RTTLVDSRSSVTDVKFAPKHLG  126 (361)
T ss_pred             EEecCCcEEEEEecCccccceEEEEecCCceeeeeecccc-cccc----cceeEE---EEEeecCCcceeEEEecchhcc
Confidence            3579999999999654 48999999999999999743111 1100    011111   11223456789999998743 4


Q ss_pred             cEEEEEeCCCeEEEEECCCCeeeEEEec--------------CCceEEeeeccCCCCceEEEEeeCC-----CcEEEEeC
Q 013274          117 GLFVTGSYDHYVKVWDTNCTRVVMNFKM--------------PGKVYRTAMSPLAASHMLIAAGTED-----VQVRLCDI  177 (446)
Q Consensus       117 ~~l~s~s~D~~i~iWd~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~lasgs~d-----~~v~vwd~  177 (446)
                      -.+|+++.||++|||+....--+...++              .....++.+.+.-....+||.|+.+     +.++||..
T Consensus       127 LklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~  206 (361)
T KOG2445|consen  127 LKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEY  206 (361)
T ss_pred             eEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEe
Confidence            5689999999999998754432322221              1224566666543334578888765     37888876


Q ss_pred             CCC--c--eeeeeeCCCCCeEEEEEecCCC---eEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeec
Q 013274          178 ASG--A--ISQTLSGHRDGIMTVEWSTSSE---WILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSIS  250 (446)
Q Consensus       178 ~~~--~--~~~~l~~h~~~v~sv~~s~~~~---~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (446)
                      ..+  +  .+..|.+|.++|..++|.|+-.   .+|++++.|| |+||.++....  .+.             ....   
T Consensus       207 ~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s--~i~-------------~ee~---  267 (361)
T KOG2445|consen  207 NENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARS--AIE-------------EEEV---  267 (361)
T ss_pred             cCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccc--hhh-------------hhcc---
Confidence            544  2  3457889999999999999743   3788999999 99999863210  000             0000   


Q ss_pred             cccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecC
Q 013274          251 KSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD  330 (446)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D  330 (446)
                        .+                  +...     ..          +   .+......-.|.+.|..+.|+--|..|+|.|.|
T Consensus       268 --~~------------------~~~~-----~~----------l---~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdD  309 (361)
T KOG2445|consen  268 --LA------------------PDLM-----TD----------L---PVEKVSELDDHNGEVWRVRWNMTGTILSSTGDD  309 (361)
T ss_pred             --cC------------------CCCc-----cc----------c---ceEEeeeccCCCCceEEEEEeeeeeEEeecCCC
Confidence              00                  0000     00          0   000011234799999999999999999999999


Q ss_pred             CcEEEEecC
Q 013274          331 SRIRLWDVE  339 (446)
Q Consensus       331 ~~i~lWd~~  339 (446)
                      |.||+|-..
T Consensus       310 G~VRLWkan  318 (361)
T KOG2445|consen  310 GCVRLWKAN  318 (361)
T ss_pred             ceeeehhhh
Confidence            999999543

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.70  E-value=4.3e-15  Score=130.55  Aligned_cols=244  Identities=17%  Similarity=0.267  Sum_probs=171.7

Q ss_pred             EEEEeecCCcEEEEEeCCCeEEEEECCCC--------------eeeEEEecCCceEEeeec----cCCCCceEEEEeeCC
Q 013274          108 SAIWYPVDTGLFVTGSYDHYVKVWDTNCT--------------RVVMNFKMPGKVYRTAMS----PLAASHMLIAAGTED  169 (446)
Q Consensus       108 ~~~~~~~~~~~l~s~s~D~~i~iWd~~~~--------------~~~~~~~~~~~~~~~~~~----~~~~~~~~lasgs~d  169 (446)
                      .+.|+| ||.-|++-+.|..+++|++...              .....++..+.++.-++.    .+.++..++|+.+.+
T Consensus        54 gckWSP-DGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~  132 (406)
T KOG2919|consen   54 GCKWSP-DGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD  132 (406)
T ss_pred             cceeCC-CCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence            356887 8999999999999999997421              112223333445544443    334566789999999


Q ss_pred             CcEEEEeCCCCceeeeee--CCCCCe---EEEEEecCCCeEEEEeeCCCcEEEEEc-cCCceeEEeecccccccCCCccc
Q 013274          170 VQVRLCDIASGAISQTLS--GHRDGI---MTVEWSTSSEWILVTGGCDGAIRFWDI-RRAGCFRVLDQSQSQLGRRPPLL  243 (446)
Q Consensus       170 ~~v~vwd~~~~~~~~~l~--~h~~~v---~sv~~s~~~~~~l~S~s~Dg~I~iWd~-~~~~~~~~~~~~~~~~~~~~~~~  243 (446)
                      .-|++||.-+|+....+.  .|.+.+   .++.|+|+|..+ . ++....||++|+ |.+..+..+..            
T Consensus       133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeql-f-aGykrcirvFdt~RpGr~c~vy~t------------  198 (406)
T KOG2919|consen  133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQL-F-AGYKRCIRVFDTSRPGRDCPVYTT------------  198 (406)
T ss_pred             CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeE-e-ecccceEEEeeccCCCCCCcchhh------------
Confidence            999999999998766554  466655   578999999974 3 456789999998 43321110000            


Q ss_pred             ccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccC-CC
Q 013274          244 KRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED-GM  322 (446)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~d-g~  322 (446)
                                                                        ...       ...+..+-|.+++|+|- .+
T Consensus       199 --------------------------------------------------~~~-------~k~gq~giisc~a~sP~~~~  221 (406)
T KOG2919|consen  199 --------------------------------------------------VTK-------GKFGQKGIISCFAFSPMDSK  221 (406)
T ss_pred             --------------------------------------------------hhc-------ccccccceeeeeeccCCCCc
Confidence                                                              000       00122455889999995 56


Q ss_pred             EEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeC--CCceEEEEeec-CceEEEecccccce
Q 013274          323 YLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC--MTAVKAFDIWS-GKTCLTFRGHYEYV  399 (446)
Q Consensus       323 ~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~-~~~~~~l~gH~~~v  399 (446)
                      .++.|+-..++-|++-...++.    ..+..+.+.+..+.+.+++..+++++  ...+..||+.. +.++..|.+|.+.-
T Consensus       222 ~~a~gsY~q~~giy~~~~~~pl----~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~T  297 (406)
T KOG2919|consen  222 TLAVGSYGQRVGIYNDDGRRPL----QLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDT  297 (406)
T ss_pred             ceeeecccceeeeEecCCCCce----eeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCc
Confidence            8999999999999976655432    22334567788899999999999975  46889999954 56778888887622


Q ss_pred             E-E--EEEcCCCCEEEEeeCCCcEEEeCCCC
Q 013274          400 N-C--CCFSSQDQELYTGGNDRQILVWCPSR  427 (446)
Q Consensus       400 ~-~--~~fSpd~~~lvtgs~D~~v~vW~~~~  427 (446)
                      + .  +..-|++++|++|+.||.|++|+...
T Consensus       298 NQRI~FDld~~~~~LasG~tdG~V~vwdlk~  328 (406)
T KOG2919|consen  298 NQRILFDLDPKGEILASGDTDGSVRVWDLKD  328 (406)
T ss_pred             cceEEEecCCCCceeeccCCCccEEEEecCC
Confidence            1 2  33458999999999999999999875

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.70  E-value=4.4e-15  Score=150.53  Aligned_cols=173  Identities=17%  Similarity=0.237  Sum_probs=117.1

Q ss_pred             eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (446)
Q Consensus        39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~  118 (446)
                      +..|+..|+.++.+++.+.+++|||.||+||+||+..-..     +....++.+.-     ..-...+.++...+ ++++
T Consensus      1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~-----~~~s~rS~lty-----s~~~sr~~~vt~~~-~~~~ 1112 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEG-----EGGSARSELTY-----SPEGSRVEKVTMCG-NGDQ 1112 (1431)
T ss_pred             hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhc-----CcceeeeeEEE-----eccCCceEEEEecc-CCCe
Confidence            4578999999999876669999999999999999864321     11112222111     11122344444443 6789


Q ss_pred             EEEEeCCCeEEEEECCCCe-------eeEEEe--cCCceE-EeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeee-
Q 013274          119 FVTGSYDHYVKVWDTNCTR-------VVMNFK--MPGKVY-RTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS-  187 (446)
Q Consensus       119 l~s~s~D~~i~iWd~~~~~-------~~~~~~--~~~~~~-~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~-  187 (446)
                      +|.++.||.|++.+++...       +.+...  ..|.+- .-++.....+ ..++.+...+.|..||+++....++++ 
T Consensus      1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S-~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQS-HVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred             EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccc-eeEEEEEeccceEEecchhhhhHHhhhc
Confidence            9999999999999987521       111111  123322 2223322233 477888889999999998876665554 


Q ss_pred             -CCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCc
Q 013274          188 -GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG  224 (446)
Q Consensus       188 -~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~  224 (446)
                       -..+.|++++.+|.+.| ++.|...|.+.+||+|-+.
T Consensus      1192 ~~~hG~vTSi~idp~~~W-lviGts~G~l~lWDLRF~~ 1228 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNW-LVIGTSRGQLVLWDLRFRV 1228 (1431)
T ss_pred             CccccceeEEEecCCceE-EEEecCCceEEEEEeecCc
Confidence             34678999999999987 6899999999999998543

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=7.8e-15  Score=144.91  Aligned_cols=200  Identities=17%  Similarity=0.266  Sum_probs=148.8

Q ss_pred             CccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEE
Q 013274           42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT  121 (446)
Q Consensus        42 H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s  121 (446)
                      |...|.+++..   +.+|++|+.+++|.+|....++.-   +.+              ..-+-.+..+++.. +|..+|.
T Consensus        55 ~g~~v~~ia~~---s~~f~~~s~~~tv~~y~fps~~~~---~iL--------------~Rftlp~r~~~v~g-~g~~iaa  113 (933)
T KOG1274|consen   55 SGELVSSIACY---SNHFLTGSEQNTVLRYKFPSGEED---TIL--------------ARFTLPIRDLAVSG-SGKMIAA  113 (933)
T ss_pred             cCceeEEEeec---ccceEEeeccceEEEeeCCCCCcc---cee--------------eeeeccceEEEEec-CCcEEEe
Confidence            67788888774   347999999999999998655421   111              12233455666654 7889999


Q ss_pred             EeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCC--------CCC
Q 013274          122 GSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGH--------RDG  192 (446)
Q Consensus       122 ~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h--------~~~  192 (446)
                      ||+|..|++-++.+....+.+. +.+++..+.+.|   ...+||+.+-||+|++||+.++.+..++.+-        ...
T Consensus       114 gsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p---~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i  190 (933)
T KOG1274|consen  114 GSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDP---KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRI  190 (933)
T ss_pred             ecCceeEEEEeccccchheeecccCCceeeeeEcC---CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccce
Confidence            9999999999998776655443 567788888877   4568999999999999999999877665431        334


Q ss_pred             eEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccC
Q 013274          193 IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSAN  272 (446)
Q Consensus       193 v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (446)
                      +..++|+|++.. |+..+.|+.|++|+..+......+.                                          
T Consensus       191 ~~~~aW~Pk~g~-la~~~~d~~Vkvy~r~~we~~f~Lr------------------------------------------  227 (933)
T KOG1274|consen  191 CTRLAWHPKGGT-LAVPPVDNTVKVYSRKGWELQFKLR------------------------------------------  227 (933)
T ss_pred             eeeeeecCCCCe-EEeeccCCeEEEEccCCceeheeec------------------------------------------
Confidence            577899999765 5677889999999976543221110                                          


Q ss_pred             CCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCc
Q 013274          273 GNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES  340 (446)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~  340 (446)
                                                      ..-|...++.+.|+|+|+|||+++.||.|-|||+++
T Consensus       228 --------------------------------~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  228 --------------------------------DKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             --------------------------------ccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence                                            011223388999999999999999999999999986

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.69  E-value=3.6e-15  Score=137.80  Aligned_cols=269  Identities=13%  Similarity=0.176  Sum_probs=176.8

Q ss_pred             EEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCC--e
Q 013274           60 LSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT--R  137 (446)
Q Consensus        60 ~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~--~  137 (446)
                      -.+|...+++|||....+....           ++..  ...|  .+.++.|...+.-.+++.+.|+.+++|.=...  +
T Consensus         6 ~~aS~gd~~kl~D~s~~~~~~~-----------~~~~--t~~p--g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~   70 (673)
T KOG4378|consen    6 HVASTGDKTKLSDFSDLETKSE-----------YVHQ--TAEP--GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPE   70 (673)
T ss_pred             eeeccCCceEEeecccccCccc-----------cccC--CCCC--cceeeeccccceEEEeecCCceeEEEecccCCCCc
Confidence            3444555799999865432110           0000  0112  26777887644334567788999999964432  2


Q ss_pred             eeEEEecCC-ceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEE
Q 013274          138 VVMNFKMPG-KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIR  216 (446)
Q Consensus       138 ~~~~~~~~~-~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~  216 (446)
                      +-..-...+ ...++++...   ..++++|+..+.|+|||++...+.+.+++|+..|++|.++-.+.+ |++++..|.|.
T Consensus        71 Vp~~~k~~gd~~~Cv~~~s~---S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~Dey-iAsvs~gGdii  146 (673)
T KOG4378|consen   71 VPRVRKLTGDNAFCVACASQ---SLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEY-IASVSDGGDII  146 (673)
T ss_pred             cceeeccccchHHHHhhhhc---ceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcce-eEEeccCCcEE
Confidence            211111222 2233333322   257899999999999999987788899999999999999988776 79999999999


Q ss_pred             EEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCC
Q 013274          217 FWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHP  296 (446)
Q Consensus       217 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (446)
                      |-.+.++.....|.                                                                  
T Consensus       147 ih~~~t~~~tt~f~------------------------------------------------------------------  160 (673)
T KOG4378|consen  147 IHGTKTKQKTTTFT------------------------------------------------------------------  160 (673)
T ss_pred             EEecccCcccccee------------------------------------------------------------------
Confidence            99876542110000                                                                  


Q ss_pred             CcccccccccccccCeEEEEEccCCCE-EEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEE--e
Q 013274          297 GMLSSQDRATAHYGAVTGLKVTEDGMY-LLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFV--P  373 (446)
Q Consensus       297 ~~~~~~~~~~~h~~~v~~l~fs~dg~~-l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  373 (446)
                               .+....|+-|.|+|..++ |.+++.+|.|.+||+....+.+.   ....+..+..-++++|.-..+++  +
T Consensus       161 ---------~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~---~~~~HsAP~~gicfspsne~l~vsVG  228 (673)
T KOG4378|consen  161 ---------IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFH---ASEAHSAPCRGICFSPSNEALLVSVG  228 (673)
T ss_pred             ---------cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccc---hhhhccCCcCcceecCCccceEEEec
Confidence                     001123677899998764 67789999999999987543321   11222223334677775444333  3


Q ss_pred             CCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274          374 CMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS  426 (446)
Q Consensus       374 ~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~  426 (446)
                      .+..+.++|+.+.+....|. -.-+.+.|+|+++|.+|+.|...|.|..+|+.
T Consensus       229 ~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R  280 (673)
T KOG4378|consen  229 YDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMR  280 (673)
T ss_pred             ccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecc
Confidence            45678999998766554443 23468999999999999999999999999986

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.68  E-value=2.6e-15  Score=132.24  Aligned_cols=257  Identities=18%  Similarity=0.261  Sum_probs=171.6

Q ss_pred             CccceeEEEeecC---CCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274           42 HKGSINSLQVDLT---EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (446)
Q Consensus        42 H~~~v~~l~~s~~---~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~  118 (446)
                      |..+-+.++|+-+   ++.+||.|+.-|-|+|.|+..+...                 ....||..+|..+.++|.+.++
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~-----------------~~~~ghG~sINeik~~p~~~ql  150 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCS-----------------KNYRGHGGSINEIKFHPDRPQL  150 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhc-----------------cceeccCccchhhhcCCCCCcE
Confidence            6777788887533   2458999999999999999766532                 1234899999999999999999


Q ss_pred             EEEEeCCCeEEEEECCCCeeeEEEe----cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCce------e-----
Q 013274          119 FVTGSYDHYVKVWDTNCTRVVMNFK----MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI------S-----  183 (446)
Q Consensus       119 l~s~s~D~~i~iWd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~------~-----  183 (446)
                      +++||.|.+||+|++.+..++.-|.    +.+.+.++.++.++   ..|++++.|.++++|++.....      .     
T Consensus       151 vls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~g---d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~  227 (385)
T KOG1034|consen  151 VLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDG---DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSP  227 (385)
T ss_pred             EEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCC---CeeeccCCcceEEEEecChhHHhhhhhhhcccCC
Confidence            9999999999999999999988775    23457788887654   4899999999999999973210      0     


Q ss_pred             -----------e------eeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccc
Q 013274          184 -----------Q------TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRK  246 (446)
Q Consensus       184 -----------~------~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (446)
                                 .      +-.-|...|.||.|-.  . +++|=|.++.|..|..-+.+  ..++.....           
T Consensus       228 ~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--d-~ilSkscenaI~~w~pgkl~--e~~~~vkp~-----------  291 (385)
T KOG1034|consen  228 NKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--D-FILSKSCENAIVCWKPGKLE--ESIHNVKPP-----------  291 (385)
T ss_pred             CCccCcCCccccccccccccccccchHHHHHHHh--h-heeecccCceEEEEecchhh--hhhhccCCC-----------
Confidence                       0      1123788888888864  3 46798999999999752111  000000000           


Q ss_pred             eeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEE--EccCCCEE
Q 013274          247 VSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLK--VTEDGMYL  324 (446)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~--fs~dg~~l  324 (446)
                                              .....    -.+.+                     .--...|.-|.  |.|-++.|
T Consensus       292 ------------------------es~~T----i~~~~---------------------~~~~c~iWfirf~~d~~~~~l  322 (385)
T KOG1034|consen  292 ------------------------ESATT----ILGEF---------------------DYPMCDIWFIRFAFDPWQKML  322 (385)
T ss_pred             ------------------------cccee----eeeEe---------------------ccCccceEEEEEeecHHHHHH
Confidence                                    00000    00000                     00012355554  45668899


Q ss_pred             EEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCC-ceEEEEe
Q 013274          325 LSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMT-AVKAFDI  383 (446)
Q Consensus       325 ~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~  383 (446)
                      |.|.+.|.|.+||++...+...............-+.+++.|+.+++..+.+ .|--||.
T Consensus       323 a~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  323 ALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             hhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence            9999999999999998654211111111222344568899999888777663 5666664

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.68  E-value=1.5e-15  Score=139.00  Aligned_cols=207  Identities=24%  Similarity=0.317  Sum_probs=150.7

Q ss_pred             CccccEeEEEEeecCC-cEEEEEeCCCeEEEEECCCCee----eEEE-ecCCceEEeeeccCCCCceEEEEeeCCCcEEE
Q 013274          101 GHKYAISSAIWYPVDT-GLFVTGSYDHYVKVWDTNCTRV----VMNF-KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRL  174 (446)
Q Consensus       101 gh~~~V~~~~~~~~~~-~~l~s~s~D~~i~iWd~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~v  174 (446)
                      -|...|+++.|+|... +++|+|+.-|.|=+||+.+.+.    +..+ .+.+++.++.|.|...  ..+.+.|.||+|++
T Consensus       184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~--s~i~ssSyDGtiR~  261 (498)
T KOG4328|consen  184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT--SQIYSSSYDGTIRL  261 (498)
T ss_pred             ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCCh--hheeeeccCceeee
Confidence            5778899999999777 7899999999999999953221    2222 3455688888888654  35778899999999


Q ss_pred             EeCCCCce--eeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccc
Q 013274          175 CDIASGAI--SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKS  252 (446)
Q Consensus       175 wd~~~~~~--~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (446)
                      -|++++..  +..+..-.....+..|+-+...++ .+..=|...+||+|+++--                          
T Consensus       262 ~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl-~~~~~G~f~~iD~R~~~s~--------------------------  314 (498)
T KOG4328|consen  262 QDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVL-FGDNVGNFNVIDLRTDGSE--------------------------  314 (498)
T ss_pred             eeecchhhHHHhhcCccceeeeeccccCCCccEE-EeecccceEEEEeecCCcc--------------------------
Confidence            99998743  333433445566777877776554 5554468999999875310                          


Q ss_pred             cccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCC-CEEEEeecCC
Q 013274          253 LSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDS  331 (446)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~sgs~D~  331 (446)
                                                                       ...+.-|...|+.|+++|.. .+|+|+|.|+
T Consensus       315 -------------------------------------------------~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~  345 (498)
T KOG4328|consen  315 -------------------------------------------------YENLRLHKKKITSVALNPVCPWFLATASLDQ  345 (498)
T ss_pred             -------------------------------------------------chhhhhhhcccceeecCCCCchheeecccCc
Confidence                                                             00123455679999999976 5789999999


Q ss_pred             cEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEE
Q 013274          332 RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQEL  411 (446)
Q Consensus       332 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~l  411 (446)
                      +++|||++.-...          .+ +                              ......|...|+++.|||++..|
T Consensus       346 T~kIWD~R~l~~K----------~s-p------------------------------~lst~~HrrsV~sAyFSPs~gtl  384 (498)
T KOG4328|consen  346 TAKIWDLRQLRGK----------AS-P------------------------------FLSTLPHRRSVNSAYFSPSGGTL  384 (498)
T ss_pred             ceeeeehhhhcCC----------CC-c------------------------------ceecccccceeeeeEEcCCCCce
Confidence            9999999752210          00 0                              01123499999999999999889


Q ss_pred             EEeeCCCcEEEeCCC
Q 013274          412 YTGGNDRQILVWCPS  426 (446)
Q Consensus       412 vtgs~D~~v~vW~~~  426 (446)
                      +|.+.|+.||||+..
T Consensus       385 ~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  385 LTTCQDNEIRVFDSS  399 (498)
T ss_pred             EeeccCCceEEeecc
Confidence            999999999999983

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.68  E-value=4.4e-15  Score=141.68  Aligned_cols=287  Identities=15%  Similarity=0.191  Sum_probs=196.7

Q ss_pred             ceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeC
Q 013274           45 SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY  124 (446)
Q Consensus        45 ~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~  124 (446)
                      +|+.++|-|+ |..|+-+. +..+.+||.++|..                 .++..||+..|++++++. ||++||||+.
T Consensus        14 ci~d~afkPD-GsqL~lAA-g~rlliyD~ndG~l-----------------lqtLKgHKDtVycVAys~-dGkrFASG~a   73 (1081)
T KOG1538|consen   14 CINDIAFKPD-GTQLILAA-GSRLLVYDTSDGTL-----------------LQPLKGHKDTVYCVAYAK-DGKRFASGSA   73 (1081)
T ss_pred             chheeEECCC-CceEEEec-CCEEEEEeCCCccc-----------------ccccccccceEEEEEEcc-CCceeccCCC
Confidence            8999999875 44454443 44699999988753                 245679999999999886 8999999999


Q ss_pred             CCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCe
Q 013274          125 DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEW  204 (446)
Q Consensus       125 D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~  204 (446)
                      |+.|.+|+..- +.+.++.+...+.++.|.|..   .++++++. ...-+|..+....++.-  ....+.+.+|..||++
T Consensus        74 DK~VI~W~~kl-EG~LkYSH~D~IQCMsFNP~~---h~LasCsL-sdFglWS~~qK~V~K~k--ss~R~~~CsWtnDGqy  146 (1081)
T KOG1538|consen   74 DKSVIIWTSKL-EGILKYSHNDAIQCMSFNPIT---HQLASCSL-SDFGLWSPEQKSVSKHK--SSSRIICCSWTNDGQY  146 (1081)
T ss_pred             ceeEEEecccc-cceeeeccCCeeeEeecCchH---HHhhhcch-hhccccChhhhhHHhhh--hheeEEEeeecCCCcE
Confidence            99999998642 334557777778888887754   35666654 34678887665433221  2356788899999986


Q ss_pred             EEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeeccccee
Q 013274          205 ILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRI  284 (446)
Q Consensus       205 ~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (446)
                       |+-|-.||+|.|-+-. ++.-..+                                                       
T Consensus       147 -lalG~~nGTIsiRNk~-gEek~~I-------------------------------------------------------  169 (1081)
T KOG1538|consen  147 -LALGMFNGTISIRNKN-GEEKVKI-------------------------------------------------------  169 (1081)
T ss_pred             -EEEeccCceEEeecCC-CCcceEE-------------------------------------------------------
Confidence             7889999999877522 1100000                                                       


Q ss_pred             ecCCccccccCCCcccccccccccccCeEEEEEccCCC-----EEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCe
Q 013274          285 PAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM-----YLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPI  359 (446)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~-----~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~  359 (446)
                                        ++.-+...+|.+++|+|...     .++......++-++.+...   +.  ...+.-.-.+.
T Consensus       170 ------------------~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~---~I--gk~r~L~FdP~  226 (1081)
T KOG1538|consen  170 ------------------ERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK---QI--GKDRALNFDPC  226 (1081)
T ss_pred             ------------------eCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce---ee--cccccCCCCch
Confidence                              01113346799999998643     5666777777777776531   11  10000012355


Q ss_pred             EEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCCCCCcCCCcc
Q 013274          360 QLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVDAGPM  438 (446)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~~~~~~~~~~  438 (446)
                      .+.+.+++.++.+++.+..--+.-.+|-.+.++.....+|+.++..|+++.++-|.-||+|.-+++--+.+-++.-.+|
T Consensus       227 CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RY  305 (1081)
T KOG1538|consen  227 CISYFTNGEYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKDRY  305 (1081)
T ss_pred             hheeccCCcEEEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHhHhhhhhHHhh
Confidence            6778888888888765543333334555667777778899999999999999999999999999886555544444433

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.68  E-value=1e-16  Score=156.11  Aligned_cols=236  Identities=22%  Similarity=0.369  Sum_probs=168.7

Q ss_pred             cCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCC
Q 013274          100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA  178 (446)
Q Consensus       100 ~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~  178 (446)
                      .||..+|+|+++-. .+.++++|++|..++||..+++.++..... .+.+...+..   .+..++|++|.|..|++|-+.
T Consensus       187 lgH~naVyca~fDr-tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs---~~n~~iaaaS~D~vIrvWrl~  262 (1113)
T KOG0644|consen  187 LGHRNAVYCAIFDR-TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVS---SNNTMIAAASNDKVIRVWRLP  262 (1113)
T ss_pred             Hhhhhheeeeeecc-ccceEeecCccceeeeeeccchhhhccCCCCccccchhccc---hhhhhhhhcccCceEEEEecC
Confidence            49999999987754 688999999999999999998887765442 2333333332   345679999999999999999


Q ss_pred             CCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCC
Q 013274          179 SGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQN  258 (446)
Q Consensus       179 ~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (446)
                      ++.++..|.||++.|++++|+|-     .+.+.||++++||.|-.    .+.....                        
T Consensus       263 ~~~pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~----~~~y~pr------------------------  309 (1113)
T KOG0644|consen  263 DGAPVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLE----PRIYVPR------------------------  309 (1113)
T ss_pred             CCchHHHHhccccceeeeccCcc-----ccCCCCCceEecccccc----ccccCCC------------------------
Confidence            99999999999999999999983     48889999999998711    1100000                        


Q ss_pred             CCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEec
Q 013274          259 SSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDV  338 (446)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~  338 (446)
                                                           +...       .....+..+.|-..+..++||+.|+..+.|.+
T Consensus       310 -------------------------------------p~~~-------~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~  345 (1113)
T KOG0644|consen  310 -------------------------------------PLKF-------TEKDLVDSILFENNGDRFLTGSRDGEARNHEF  345 (1113)
T ss_pred             -------------------------------------CCCc-------ccccceeeeeccccccccccccCCcccccchh
Confidence                                                 0000       00123556677788888999999999999976


Q ss_pred             CcCce--eeeeeeEEEeecCCCeEEEEcCC-CcEEEEeC-CCceEEEEeecCceEEEecccccceEEEEEcCCCCEEE-E
Q 013274          339 ESGRN--TLVNFETVRLQTSKPIQLATTQD-PAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELY-T  413 (446)
Q Consensus       339 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lv-t  413 (446)
                      .-...  ....|..            ...+ ..++..+- .-...+|++.+|.+.+.+.+|...+..+.|+|=+..++ +
T Consensus       346 ~~l~~~~~~lif~t------------~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~ms  413 (1113)
T KOG0644|consen  346 EQLAWRSNLLIFVT------------RSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMS  413 (1113)
T ss_pred             hHhhhhccceEEEe------------ccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhh
Confidence            53211  1111111            0001 11111111 12456899999999999999999999999999776665 8


Q ss_pred             eeCCCcEEEeCCCCC
Q 013274          414 GGNDRQILVWCPSRH  428 (446)
Q Consensus       414 gs~D~~v~vW~~~~~  428 (446)
                      ++.||...||+.-.+
T Consensus       414 ag~dgst~iwdi~eg  428 (1113)
T KOG0644|consen  414 AGYDGSTIIWDIWEG  428 (1113)
T ss_pred             ccCCCceEeeecccC
Confidence            999999999987544

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.66  E-value=2.4e-13  Score=121.84  Aligned_cols=244  Identities=16%  Similarity=0.251  Sum_probs=166.7

Q ss_pred             cceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEe
Q 013274           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS  123 (446)
Q Consensus        44 ~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s  123 (446)
                      ..++.+.|+. +...|..|+.|| -++++.+.-.+...                 ...-...|..+.|+   ..++|-.+
T Consensus         6 ~ti~~~~~Nq-d~~~lsvGs~~G-yk~~~~~~~~k~~~-----------------~~~~~~~IvEmLFS---SSLvaiV~   63 (391)
T KOG2110|consen    6 PTINFIGFNQ-DSTLLSVGSKDG-YKIFSCSPFEKCFS-----------------KDTEGVSIVEMLFS---SSLVAIVS   63 (391)
T ss_pred             cceeeeeecc-ceeEEEccCCCc-eeEEecCchHHhhc-----------------ccCCCeEEEEeecc---cceeEEEe
Confidence            4567777874 566788888888 57887754322100                 00011123333443   34666655


Q ss_pred             CC--CeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeee---CCCCCeEEEEE
Q 013274          124 YD--HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS---GHRDGIMTVEW  198 (446)
Q Consensus       124 ~D--~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~---~h~~~v~sv~~  198 (446)
                      .+  +.+++.++.....+..+..+..+.++.+..     .++++.- .+.|+|+|+++-+++.++.   .+...+.++++
T Consensus        64 ~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr-----~RLvV~L-ee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~  137 (391)
T KOG2110|consen   64 IKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNR-----KRLVVCL-EESIYIYDIKDMKLLHTIETTPPNPKGLCALSP  137 (391)
T ss_pred             cCCCceEEEEEcccCceEEEEecCCceEEEEEcc-----ceEEEEE-cccEEEEecccceeehhhhccCCCccceEeecc
Confidence            55  459999999888888888888887777653     3444443 4459999999998887764   45666778777


Q ss_pred             ecCCCeEEEEeeC-CCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCcee
Q 013274          199 STSSEWILVTGGC-DGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVR  277 (446)
Q Consensus       199 s~~~~~~l~S~s~-Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (446)
                      ++.+.++..=++. -|.|.+||+.+.....                                                  
T Consensus       138 n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~--------------------------------------------------  167 (391)
T KOG2110|consen  138 NNANCYLAYPGSTTSGDVVLFDTINLQPVN--------------------------------------------------  167 (391)
T ss_pred             CCCCceEEecCCCCCceEEEEEcccceeee--------------------------------------------------
Confidence            7766664333443 4889999976532111                                                  


Q ss_pred             ecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCc-EEEEecCcCceeeeeeeEEEeecC
Q 013274          278 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSR-IRLWDVESGRNTLVNFETVRLQTS  356 (446)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~-i~lWd~~~~~~~~~~~~~~~~~~~  356 (446)
                                                ...+|.+++.+|+|+++|++|||+|..|+ ||++.+.+++. +.+|.     .+
T Consensus       168 --------------------------~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~k-l~eFR-----RG  215 (391)
T KOG2110|consen  168 --------------------------TINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQK-LYEFR-----RG  215 (391)
T ss_pred             --------------------------EEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccE-eeeee-----CC
Confidence                                      12479999999999999999999999999 48998887642 21111     10


Q ss_pred             CCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCCCCCcC
Q 013274          357 KPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVD  434 (446)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~~~~~~  434 (446)
                      .           .                          --.|.+++||||+++|+..|.-++|.|+.++....++..
T Consensus       216 ~-----------~--------------------------~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~  256 (391)
T KOG2110|consen  216 T-----------Y--------------------------PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPE  256 (391)
T ss_pred             c-----------e--------------------------eeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCC
Confidence            0           0                          124789999999999999999999999999866655544

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.66  E-value=6.5e-15  Score=139.00  Aligned_cols=242  Identities=19%  Similarity=0.252  Sum_probs=165.5

Q ss_pred             cCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCC---------
Q 013274          100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV---------  170 (446)
Q Consensus       100 ~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~---------  170 (446)
                      .||++.|.++...| .|..|++||+||+||||.+.++.+++++++.+.+.+++|.|.... .+||++-.+.         
T Consensus       397 rGHtg~Vr~iSvdp-~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~-~vLAvA~~~~~~ivnp~~G  474 (733)
T KOG0650|consen  397 RGHTGLVRSISVDP-SGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDL-CVLAVAVGECVLIVNPIFG  474 (733)
T ss_pred             eccCCeEEEEEecC-CcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCc-eeEEEEecCceEEeCcccc
Confidence            59999999998887 788999999999999999999999999999999999999997643 3444433222         


Q ss_pred             -----------------------cEEEEeCCCCc----eeeeeeCCCCCeEEEEEecCCCeEEEEeeCC---CcEEEEEc
Q 013274          171 -----------------------QVRLCDIASGA----ISQTLSGHRDGIMTVEWSTSSEWILVTGGCD---GAIRFWDI  220 (446)
Q Consensus       171 -----------------------~v~vwd~~~~~----~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~D---g~I~iWd~  220 (446)
                                             .+..|.-....    -+...-.|...|..|.|+..|.| |++...|   ..|.|.++
T Consensus       475 ~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDY-latV~~~~~~~~VliHQL  553 (733)
T KOG0650|consen  475 DRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDY-LATVMPDSGNKSVLIHQL  553 (733)
T ss_pred             chhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCce-EEEeccCCCcceEEEEec
Confidence                                   23344322110    11223347778888888888876 4555443   34666665


Q ss_pred             cCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCccc
Q 013274          221 RRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLS  300 (446)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (446)
                      ......                                                                          
T Consensus       554 SK~~sQ--------------------------------------------------------------------------  559 (733)
T KOG0650|consen  554 SKRKSQ--------------------------------------------------------------------------  559 (733)
T ss_pred             cccccc--------------------------------------------------------------------------
Confidence            432100                                                                          


Q ss_pred             ccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceE
Q 013274          301 SQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVK  379 (446)
Q Consensus       301 ~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  379 (446)
                        ..+..-.|.|-++.|+|...+|+.++.. .|++||+...... ..+.+   .......++..+.+.-+++++. ..+.
T Consensus       560 --~PF~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelv-KkL~t---g~kwiS~msihp~GDnli~gs~d~k~~  632 (733)
T KOG0650|consen  560 --SPFRKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELV-KKLLT---GSKWISSMSIHPNGDNLILGSYDKKMC  632 (733)
T ss_pred             --CchhhcCCceeEEEecCCCceEEEEecc-ceEEEehhHHHHH-HHHhc---CCeeeeeeeecCCCCeEEEecCCCeeE
Confidence              0001113458889999999888877754 6999999863210 00000   0011234566676666666554 4555


Q ss_pred             EEEee-cCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCC
Q 013274          380 AFDIW-SGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP  425 (446)
Q Consensus       380 ~~d~~-~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~  425 (446)
                      -+|+. +.+..++++-|...|..|+|++--.+++|||.|+++.|+.-
T Consensus       633 WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg  679 (733)
T KOG0650|consen  633 WFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHG  679 (733)
T ss_pred             EEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEee
Confidence            56764 44678899999999999999999999999999999999943

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=2.6e-15  Score=140.30  Aligned_cols=167  Identities=23%  Similarity=0.361  Sum_probs=123.2

Q ss_pred             eEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecC-
Q 013274           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD-  115 (446)
Q Consensus        37 ~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~-  115 (446)
                      ..+.||+|.||||.|+. +|.+|+|||.|-.+.|||.-..+            .++.+    ..||...|.++.|.|.. 
T Consensus        44 ~eL~GH~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~K------------llhsI----~TgHtaNIFsvKFvP~tn  106 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFEYK------------LLHSI----STGHTANIFSVKFVPYTN  106 (758)
T ss_pred             hhhccccceecceeecC-CCCEEeecCCcceEEeecchhcc------------eeeee----ecccccceeEEeeeccCC
Confidence            45789999999999985 68999999999999999975322            12222    25999999999998854 


Q ss_pred             CcEEEEEeCCCeEEEEECCCCe----------eeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc---
Q 013274          116 TGLFVTGSYDHYVKVWDTNCTR----------VVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA---  181 (446)
Q Consensus       116 ~~~l~s~s~D~~i~iWd~~~~~----------~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~---  181 (446)
                      ..+++||+.|..|+++|+...+          ....+.+ ...+..++..+..+  ..+-+++.||.|+-+|++...   
T Consensus       107 nriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P--htfwsasEDGtirQyDiREph~c~  184 (758)
T KOG1310|consen  107 NRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP--HTFWSASEDGTIRQYDIREPHVCN  184 (758)
T ss_pred             CeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCC--ceEEEecCCcceeeecccCCccCC
Confidence            4578899999999999997421          1122221 22344556666544  478899999999999997532   


Q ss_pred             ----ee---eeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccC
Q 013274          182 ----IS---QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR  222 (446)
Q Consensus       182 ----~~---~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~  222 (446)
                          +.   ..+...--...++.++|...++|+.|+.|--.++||.|.
T Consensus       185 p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr  232 (758)
T KOG1310|consen  185 PDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRR  232 (758)
T ss_pred             ccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhh
Confidence                11   112222335688999999999999999999999999763

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.65  E-value=1.8e-14  Score=124.96  Aligned_cols=212  Identities=19%  Similarity=0.255  Sum_probs=155.0

Q ss_pred             CCccceeEEEeecCC----CCEEEEeeCCCcEEEEEcccCc-CCCCCCccccccceEEeccccccCccccEeEEEEeecC
Q 013274           41 PHKGSINSLQVDLTE----ERYLLSGASDSSVAVYDVQRAT-DYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (446)
Q Consensus        41 ~H~~~v~~l~~s~~~----~~~l~s~s~Dg~i~lWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~  115 (446)
                      .|--+++.+.|.|+.    .++|||.|.  .+|||.+...+ .......+         .......+..++++-.|...+
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L---------~~~kns~~~aPlTSFDWne~d  162 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVL---------NNNKNSEFCAPLTSFDWNEVD  162 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhh---------ccCcccccCCcccccccccCC
Confidence            588899999998753    246766543  79999986432 11111111         111123456678888888888


Q ss_pred             CcEEEEEeCCCeEEEEECCCCee---e-EEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeee---C
Q 013274          116 TGLFVTGSYDHYVKVWDTNCTRV---V-MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS---G  188 (446)
Q Consensus       116 ~~~l~s~s~D~~i~iWd~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~---~  188 (446)
                      ..++.++|-|.|..|||++++..   . ..+.+...++.++|...  +..+||+.+.||+||+||++.-+....+.   .
T Consensus       163 p~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~--s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~  240 (364)
T KOG0290|consen  163 PNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKG--SRDVFASVGADGSVRMFDLRSLEHSTIIYEDPS  240 (364)
T ss_pred             cceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccC--ccceEEEecCCCcEEEEEecccccceEEecCCC
Confidence            89999999999999999998732   2 22345667999999873  34689999999999999999876544432   2


Q ss_pred             CCCCeEEEEEecCCCeEEEEeeCC-CcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCcc
Q 013274          189 HRDGIMTVEWSTSSEWILVTGGCD-GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQ  267 (446)
Q Consensus       189 h~~~v~sv~~s~~~~~~l~S~s~D-g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (446)
                      ...+..-++|++.+.++|||-..| ..|.|-|+|....                                          
T Consensus       241 ~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t------------------------------------------  278 (364)
T KOG0290|consen  241 PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT------------------------------------------  278 (364)
T ss_pred             CCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc------------------------------------------
Confidence            356788899999888888887766 4699999884310                                          


Q ss_pred             ccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCC-CEEEEeecCCcEEEEecCc
Q 013274          268 KRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVES  340 (446)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~sgs~D~~i~lWd~~~  340 (446)
                                                       +..++.+|.+.|++++|.|.. ..|+|+|.|..+-+||+..
T Consensus       279 ---------------------------------pva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q  319 (364)
T KOG0290|consen  279 ---------------------------------PVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ  319 (364)
T ss_pred             ---------------------------------ceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence                                             011245799999999999975 6899999999999999975

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=2.3e-13  Score=134.32  Aligned_cols=297  Identities=18%  Similarity=0.264  Sum_probs=191.8

Q ss_pred             CCccceeEEEeecCCCCEEEEeeCCCcEEEEEccc--CcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQR--ATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (446)
Q Consensus        41 ~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~  118 (446)
                      .|+-.+++.+++| .++++|+|-.||.|.+|.--.  +..+               ..+.++=|..+|.++.|++ +|.+
T Consensus       203 ~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~---------------t~t~lHWH~~~V~~L~fS~-~G~~  265 (792)
T KOG1963|consen  203 HHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSE---------------TCTLLHWHHDEVNSLSFSS-DGAY  265 (792)
T ss_pred             hhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccc---------------cceEEEecccccceeEEec-CCce
Confidence            5777789999997 589999999999999996322  1111               0112244778999999887 8999


Q ss_pred             EEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeC----------
Q 013274          119 FVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG----------  188 (446)
Q Consensus       119 l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~----------  188 (446)
                      |+|||..+-+-+|.++++....--.+.+.+..+.+++++   .+.+....|++|.+....+-+...++.|          
T Consensus       266 LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds---~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~  342 (792)
T KOG1963|consen  266 LLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDS---DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKT  342 (792)
T ss_pred             EeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCC---CeEEEEecCceEEEEeccchhhhhhccCccCCCccccc
Confidence            999999999999999998855544567788888888754   4677777899999887754433333222          


Q ss_pred             -CCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCcc
Q 013274          189 -HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQ  267 (446)
Q Consensus       189 -h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (446)
                       .++-.+.++++|.-+ .++-.+.-|.|.+||+.+...++-++......                               
T Consensus       343 ~~~~l~t~~~idpr~~-~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~-------------------------------  390 (792)
T KOG1963|consen  343 RPQSLTTGVSIDPRTN-SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENY-------------------------------  390 (792)
T ss_pred             cccccceeEEEcCCCC-ceeecCCCceEEEEeccccceeeeEEEEeecc-------------------------------
Confidence             345567788888443 46678888999999998765443332110000                               


Q ss_pred             ccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeec--------C--CcEEEEe
Q 013274          268 KRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS--------D--SRIRLWD  337 (446)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~--------D--~~i~lWd  337 (446)
                                        ..+.                .-+.-.+++++++..|.+++|+-.        |  -.+|+|-
T Consensus       391 ------------------~~~~----------------~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~  436 (792)
T KOG1963|consen  391 ------------------SDGD----------------VNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQ  436 (792)
T ss_pred             ------------------cCCc----------------ceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEE
Confidence                              0000                012234677777777888877632        2  2468886


Q ss_pred             cCcCceeeeeeeEEEeec--CCCeEEEEcC-CCc-EEEEe-CCCceEEEEeec------------CceEEEecccccceE
Q 013274          338 VESGRNTLVNFETVRLQT--SKPIQLATTQ-DPA-VVFVP-CMTAVKAFDIWS------------GKTCLTFRGHYEYVN  400 (446)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~-~~~~~-~~~~~~~~d~~~------------~~~~~~l~gH~~~v~  400 (446)
                      ......... +.+....+  ...+..++.+ ... +.+.+ .+..+++|...+            .+....|  |..+++
T Consensus       437 ~n~~~kt~~-L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy--~k~~i~  513 (792)
T KOG1963|consen  437 YNPNSKTFI-LNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSY--HKTPIT  513 (792)
T ss_pred             EcCCcceeE-EEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecc--ccCccc
Confidence            544322211 22211111  1112222222 222 33343 456789997732            2223333  899999


Q ss_pred             EEEEcCCCCEEEEeeCCCcEEEeCCCC
Q 013274          401 CCCFSSQDQELYTGGNDRQILVWCPSR  427 (446)
Q Consensus       401 ~~~fSpd~~~lvtgs~D~~v~vW~~~~  427 (446)
                      .++||.||. |+++|.|++|.+|++.+
T Consensus       514 a~~fs~dGs-lla~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  514 ALCFSQDGS-LLAVSFDDTITIWDYDT  539 (792)
T ss_pred             chhhcCCCc-EEEEecCCEEEEecCCC
Confidence            999999995 55789999999999987

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.63  E-value=4.6e-14  Score=138.62  Aligned_cols=253  Identities=16%  Similarity=0.194  Sum_probs=171.2

Q ss_pred             ccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeec-CCcEEEE
Q 013274           43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV-DTGLFVT  121 (446)
Q Consensus        43 ~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~-~~~~l~s  121 (446)
                      ...|.++.|+|.+..+||.|.-+|.|.+||+..+.....           .........|...|+.+.|... .+.-|+|
T Consensus       242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~-----------s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s  310 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP-----------SGLSALEVSHSEPVTAVVWLQNEHNTEFFS  310 (555)
T ss_pred             CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC-----------cccccccccCCcCeEEEEEeccCCCCceEE
Confidence            367999999998889999999999999999976543110           0011223578999999988541 1245899


Q ss_pred             EeCCCeEEEEECCCCee------eEEEe-------cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC---c----
Q 013274          122 GSYDHYVKVWDTNCTRV------VMNFK-------MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG---A----  181 (446)
Q Consensus       122 ~s~D~~i~iWd~~~~~~------~~~~~-------~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~---~----  181 (446)
                      +|.||.|..|+++--..      .....       ....+..+.|.+..+  ..++.|+.+|.|..-+-...   .    
T Consensus       311 ~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p--~~FiVGTe~G~v~~~~r~g~~~~~~~~~  388 (555)
T KOG1587|consen  311 LSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP--NHFIVGTEEGKVYKGCRKGYTPAPEVSY  388 (555)
T ss_pred             EecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCC--ceEEEEcCCcEEEEEeccCCcccccccc
Confidence            99999999998753211      00000       112245566666544  46889999999987443322   1    


Q ss_pred             -eeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEcc-CCceeEEeecccccccCCCcccccceeeccccccCCCC
Q 013274          182 -ISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR-RAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNS  259 (446)
Q Consensus       182 -~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (446)
                       ....+..|.++|.+|.++|-...+|.|++ |-+++||... ....+.                                
T Consensus       389 ~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~--------------------------------  435 (555)
T KOG1587|consen  389 KGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLL--------------------------------  435 (555)
T ss_pred             cccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcch--------------------------------
Confidence             12345668999999999998876666666 9999999754 110000                                


Q ss_pred             CcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCC-CEEEEeecCCcEEEEec
Q 013274          260 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDV  338 (446)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~sgs~D~~i~lWd~  338 (446)
                                                                  ....+...|++++|||-. ..++++..||.|.+||+
T Consensus       436 --------------------------------------------~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDL  471 (555)
T KOG1587|consen  436 --------------------------------------------SLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDL  471 (555)
T ss_pred             --------------------------------------------hhhhccceeeeeEEcCcCceEEEEEcCCCceehhhh
Confidence                                                        011223458999999976 46788899999999998


Q ss_pred             CcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCC
Q 013274          339 ESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDR  418 (446)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~  418 (446)
                      ......             ++                              .+..-+....+++.|+++|+.|+.|...|
T Consensus       472 l~~~~~-------------Pv------------------------------~s~~~~~~~l~~~~~s~~g~~lavGd~~G  508 (555)
T KOG1587|consen  472 LQDDEE-------------PV------------------------------LSQKVCSPALTRVRWSPNGKLLAVGDANG  508 (555)
T ss_pred             hccccC-------------Cc------------------------------ccccccccccceeecCCCCcEEEEecCCC
Confidence            753211             00                              00011234567888999999999999999


Q ss_pred             cEEEeCCCCC
Q 013274          419 QILVWCPSRH  428 (446)
Q Consensus       419 ~v~vW~~~~~  428 (446)
                      ++.+|+++..
T Consensus       509 ~~~~~~l~~~  518 (555)
T KOG1587|consen  509 TTHILKLSES  518 (555)
T ss_pred             cEEEEEcCch
Confidence            9999998643

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.63  E-value=4.6e-14  Score=122.33  Aligned_cols=166  Identities=20%  Similarity=0.327  Sum_probs=124.0

Q ss_pred             CCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEee-cCCcEE
Q 013274           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYP-VDTGLF  119 (446)
Q Consensus        41 ~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~-~~~~~l  119 (446)
                      .|-|.|+||-|-| ++..|++-. |..|.+|+++.....           +..+......+|....++..|+| .++.++
T Consensus       121 eavg~i~cvew~P-ns~klasm~-dn~i~l~~l~ess~~-----------vaev~ss~s~e~~~~ftsg~WspHHdgnqv  187 (370)
T KOG1007|consen  121 EAVGKINCVEWEP-NSDKLASMD-DNNIVLWSLDESSKI-----------VAEVLSSESAEMRHSFTSGAWSPHHDGNQV  187 (370)
T ss_pred             HHhCceeeEEEcC-CCCeeEEec-cCceEEEEcccCcch-----------heeecccccccccceecccccCCCCccceE
Confidence            4557899999987 566677664 899999999865432           11111111234666778889988 678888


Q ss_pred             EEEeCCCeEEEEECCCCeeeEEEec-CC-ceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC-ceeeeeeCCCCCeEEE
Q 013274          120 VTGSYDHYVKVWDTNCTRVVMNFKM-PG-KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AISQTLSGHRDGIMTV  196 (446)
Q Consensus       120 ~s~s~D~~i~iWd~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~-~~~~~l~~h~~~v~sv  196 (446)
                      ++.+ |++++.||+.+......+.- ++ .+..+.|.|.  ...+|++++.|+.|++||.+.- .+++.+.+|..-|++|
T Consensus       188 ~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpn--kq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~V  264 (370)
T KOG1007|consen  188 ATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPN--KQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAV  264 (370)
T ss_pred             EEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCC--ceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEE
Confidence            8776 68999999998776554432 11 2445555553  3568999999999999999865 5789999999999999


Q ss_pred             EEecCCCeEEEEeeCCCcEEEEEccC
Q 013274          197 EWSTSSEWILVTGGCDGAIRFWDIRR  222 (446)
Q Consensus       197 ~~s~~~~~~l~S~s~Dg~I~iWd~~~  222 (446)
                      .|+|....++.||+.|..|.+|....
T Consensus       265 Rfn~~hdqLiLs~~SDs~V~Lsca~s  290 (370)
T KOG1007|consen  265 RFNPEHDQLILSGGSDSAVNLSCASS  290 (370)
T ss_pred             EecCccceEEEecCCCceeEEEeccc
Confidence            99998777788999999999997653

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=7.2e-14  Score=128.29  Aligned_cols=159  Identities=13%  Similarity=0.159  Sum_probs=119.3

Q ss_pred             cceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCcc-ccEeEEEEeecCCcEEEEE
Q 013274           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHK-YAISSAIWYPVDTGLFVTG  122 (446)
Q Consensus        44 ~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~-~~V~~~~~~~~~~~~l~s~  122 (446)
                      -+|.+.+|.|.+...++++|.-.-...||+.+....       +..+.        .|+. ..+..-.++ +++++++..
T Consensus       258 fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~-------k~~~~--------~g~e~~~~e~FeVS-hd~~fia~~  321 (514)
T KOG2055|consen  258 FPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVT-------KLKPP--------YGVEEKSMERFEVS-HDSNFIAIA  321 (514)
T ss_pred             CccceeeecCCCceEEEecccceEEEEeeccccccc-------cccCC--------CCcccchhheeEec-CCCCeEEEc
Confidence            578889998754448999999999999999875432       11111        1222 112222233 478899999


Q ss_pred             eCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCC-CeEEEEEecC
Q 013274          123 SYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD-GIMTVEWSTS  201 (446)
Q Consensus       123 s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~-~v~sv~~s~~  201 (446)
                      |..|.|.+-...+++.+..+.+.|.+..+.|+.++   ..|.+.+.+|.|.+||++...+++++....+ .-++++.+++
T Consensus       322 G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSds---k~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~n  398 (514)
T KOG2055|consen  322 GNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDS---KELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLN  398 (514)
T ss_pred             ccCceEEeehhhhhhhhheeeeccEEeeEEEecCC---cEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCC
Confidence            99999999999999999999999999888888643   3455556688999999999988888764322 1256777788


Q ss_pred             CCeEEEEeeCCCcEEEEEccC
Q 013274          202 SEWILVTGGCDGAIRFWDIRR  222 (446)
Q Consensus       202 ~~~~l~S~s~Dg~I~iWd~~~  222 (446)
                      +.| ||+||..|.|.|||..+
T Consensus       399 g~y-lA~GS~~GiVNIYd~~s  418 (514)
T KOG2055|consen  399 GSY-LATGSDSGIVNIYDGNS  418 (514)
T ss_pred             Cce-EEeccCcceEEEeccch
Confidence            886 79999999999999654

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=1.7e-14  Score=131.30  Aligned_cols=198  Identities=22%  Similarity=0.277  Sum_probs=137.2

Q ss_pred             eEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCC
Q 013274           47 NSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDH  126 (446)
Q Consensus        47 ~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~  126 (446)
                      .+++|+. +|..|++|+.||++|||+.......                 -.+..|.++|.++.|+| |++.|++-+.| 
T Consensus       148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~-----------------l~e~~~~~eV~DL~FS~-dgk~lasig~d-  207 (398)
T KOG0771|consen  148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTI-----------------LEEIAHHAEVKDLDFSP-DGKFLASIGAD-  207 (398)
T ss_pred             eEEEEcC-CCCEeeeccccceEEEEecCcchhh-----------------hhhHhhcCccccceeCC-CCcEEEEecCC-
Confidence            6788986 5789999999999999995433211                 12346888999999987 89999999999 


Q ss_pred             eEEEEECCCCeeeEEEecCCceEEe---eeccCCCCce--EEEEeeCCCcEEEEeCCCCce-----eeeeeCCCCCeEEE
Q 013274          127 YVKVWDTNCTRVVMNFKMPGKVYRT---AMSPLAASHM--LIAAGTEDVQVRLCDIASGAI-----SQTLSGHRDGIMTV  196 (446)
Q Consensus       127 ~i~iWd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~lasgs~d~~v~vwd~~~~~~-----~~~l~~h~~~v~sv  196 (446)
                      ..+||+++++..+......+.-+..   .|..+.....  +++.-..-+.|..||+.....     ......-...|+++
T Consensus       208 ~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl  287 (398)
T KOG0771|consen  208 SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSL  287 (398)
T ss_pred             ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeE
Confidence            9999999998655444322222222   2222221112  233333455677776643211     11111223568999


Q ss_pred             EEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCce
Q 013274          197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGV  276 (446)
Q Consensus       197 ~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (446)
                      +.+++|+. ++-|+.||.|-|++..+.++++..                                               
T Consensus       288 ~VS~dGkf-~AlGT~dGsVai~~~~~lq~~~~v-----------------------------------------------  319 (398)
T KOG0771|consen  288 AVSDDGKF-LALGTMDGSVAIYDAKSLQRLQYV-----------------------------------------------  319 (398)
T ss_pred             EEcCCCcE-EEEeccCCcEEEEEeceeeeeEee-----------------------------------------------
Confidence            99999985 788999999999998654332211                                               


Q ss_pred             eecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCc
Q 013274          277 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES  340 (446)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~  340 (446)
                                                  ..+|.+.|+.|.|+||.+++++-+.|.++++.-+.-
T Consensus       320 ----------------------------k~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  320 ----------------------------KEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             ----------------------------hhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence                                        146888999999999999999999999999987653

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.61  E-value=1.2e-14  Score=136.55  Aligned_cols=211  Identities=20%  Similarity=0.286  Sum_probs=137.3

Q ss_pred             eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (446)
Q Consensus        39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~  118 (446)
                      +.+|.|+|-|+++.+ ++..+.||+-||+|+.|++....+...     +..+.  +-..+..||...|+.+++++ ..++
T Consensus       340 fraH~gPVl~v~v~~-n~~~~ysgg~Dg~I~~w~~p~n~dp~d-----s~dp~--vl~~~l~Ghtdavw~l~~s~-~~~~  410 (577)
T KOG0642|consen  340 FRAHEGPVLCVVVPS-NGEHCYSGGIDGTIRCWNLPPNQDPDD-----SYDPS--VLSGTLLGHTDAVWLLALSS-TKDR  410 (577)
T ss_pred             EecccCceEEEEecC-CceEEEeeccCceeeeeccCCCCCccc-----ccCcc--hhccceeccccceeeeeecc-cccc
Confidence            569999999999964 788999999999999998753222110     11111  11234579999999988887 5678


Q ss_pred             EEEEeCCCeEEEEECCCCeeeEEEecC---CceEEeeeccCCCCceEEEEeeCCCcEEEEeC---CCCceeeeeeC----
Q 013274          119 FVTGSYDHYVKVWDTNCTRVVMNFKMP---GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI---ASGAISQTLSG----  188 (446)
Q Consensus       119 l~s~s~D~~i~iWd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~---~~~~~~~~l~~----  188 (446)
                      |++||.|||++.|+.....+ .+|...   +...++.+....+. ..++    +.....+++   +.......+..    
T Consensus       411 Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a-~~~~----s~~~~~~~~~~~ev~s~~~~~~s~~~~  484 (577)
T KOG0642|consen  411 LLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPA-HSLA----SFRFGYTSIDDMEVVSDLLIFESSASP  484 (577)
T ss_pred             eeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhH-hhhh----hcccccccchhhhhhhheeeccccCCC
Confidence            99999999999999865554 233221   11222333221111 1111    223333333   33322222221    


Q ss_pred             ---CCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCC
Q 013274          189 ---HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRA  265 (446)
Q Consensus       189 ---h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (446)
                         -...+.-|...|... +.+++..|+.|+++|..+++.+.                                      
T Consensus       485 ~~~~~~~in~vVs~~~~~-~~~~~hed~~Ir~~dn~~~~~l~--------------------------------------  525 (577)
T KOG0642|consen  485 GPRRYPQINKVVSHPTAD-ITFTAHEDRSIRFFDNKTGKILH--------------------------------------  525 (577)
T ss_pred             cccccCccceEEecCCCC-eeEecccCCceecccccccccch--------------------------------------
Confidence               113456677777776 56799999999999977643210                                      


Q ss_pred             ccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcC
Q 013274          266 PQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG  341 (446)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~  341 (446)
                                                            ...+|...++++++.|+|-+|++|+.|+++++|.+...
T Consensus       526 --------------------------------------s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k  563 (577)
T KOG0642|consen  526 --------------------------------------SMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK  563 (577)
T ss_pred             --------------------------------------heeeccceecceeecCCCceEEeecCCceeehhhccch
Confidence                                                  01356777999999999999999999999999988654

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.59  E-value=9.3e-15  Score=142.76  Aligned_cols=285  Identities=18%  Similarity=0.283  Sum_probs=187.4

Q ss_pred             CCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEE
Q 013274           40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF  119 (446)
Q Consensus        40 ~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l  119 (446)
                      .+|-..|+|+.|+- .|.++++||.|..|+||..++..+.                 ....||.+.++.++.+. +.-.+
T Consensus       187 lgH~naVyca~fDr-tg~~Iitgsdd~lvKiwS~et~~~l-----------------As~rGhs~ditdlavs~-~n~~i  247 (1113)
T KOG0644|consen  187 LGHRNAVYCAIFDR-TGRYIITGSDDRLVKIWSMETARCL-----------------ASCRGHSGDITDLAVSS-NNTMI  247 (1113)
T ss_pred             Hhhhhheeeeeecc-ccceEeecCccceeeeeeccchhhh-----------------ccCCCCccccchhccch-hhhhh
Confidence            47999999999984 5899999999999999997665432                 12358999999988876 56688


Q ss_pred             EEEeCCCeEEEEECCCCeeeEEE-ecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeee---ee-CCCCCeE
Q 013274          120 VTGSYDHYVKVWDTNCTRVVMNF-KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT---LS-GHRDGIM  194 (446)
Q Consensus       120 ~s~s~D~~i~iWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~---l~-~h~~~v~  194 (446)
                      |++|.|+-|++|.+.++.++..+ .++|.+..++|+|..       +.+.||++++||.+-...+..   +. .-.+-+.
T Consensus       248 aaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~-------sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~  320 (1113)
T KOG0644|consen  248 AAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA-------SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVD  320 (1113)
T ss_pred             hhcccCceEEEEecCCCchHHHHhccccceeeeccCccc-------cCCCCCceEeccccccccccCCCCCCccccccee
Confidence            99999999999999988876433 467888999999853       668899999999872111111   11 1123455


Q ss_pred             EEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCC
Q 013274          195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGN  274 (446)
Q Consensus       195 sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (446)
                      ++-|...+.. +.|++.|+.-+.|.+....+                                                 
T Consensus       321 s~~~~~~~~~-f~Tgs~d~ea~n~e~~~l~~-------------------------------------------------  350 (1113)
T KOG0644|consen  321 SILFENNGDR-FLTGSRDGEARNHEFEQLAW-------------------------------------------------  350 (1113)
T ss_pred             eeeccccccc-cccccCCcccccchhhHhhh-------------------------------------------------
Confidence            6666555543 67899988888886532110                                                 


Q ss_pred             ceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccC-CCEEEEeecCCcEEEEecCcCceeeeeeeEEEe
Q 013274          275 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED-GMYLLSAGSDSRIRLWDVESGRNTLVNFETVRL  353 (446)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~d-g~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~  353 (446)
                                                       |...+.-+.++.| ..+.+++-.+-.+.+|++.++... ..   +..
T Consensus       351 ---------------------------------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~-H~---l~g  393 (1113)
T KOG0644|consen  351 ---------------------------------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLL-HN---LMG  393 (1113)
T ss_pred             ---------------------------------hccceEEEeccccccccceeeeeeeEeeeeecccchhh-hh---hcc
Confidence                                             0001111112222 256777888889999999876321 00   011


Q ss_pred             ecCCCeEEEEcCC-CcEEEEeC-CCceEEEEeecCceEEEe-cccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC--
Q 013274          354 QTSKPIQLATTQD-PAVVFVPC-MTAVKAFDIWSGKTCLTF-RGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH--  428 (446)
Q Consensus       354 ~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~d~~~~~~~~~l-~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~--  428 (446)
                      +......+-+.|- +.+.++++ .+..-+||+|.|...+.+ .+| +.+.+.+||+||+.++-...-|.+.|..-..+  
T Consensus       394 hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s  472 (1113)
T KOG0644|consen  394 HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS  472 (1113)
T ss_pred             cccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccc-ceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence            1122233334443 33333433 357889999999876544 454 56788899999999886666678888755422  


Q ss_pred             ----CCCCcCCCcc
Q 013274          429 ----ISDGVDAGPM  438 (446)
Q Consensus       429 ----~~~~~~~~~~  438 (446)
                          +.++|-.|+|
T Consensus       473 ~k~ak~dqffl~dy  486 (1113)
T KOG0644|consen  473 QKKAKYDQFFLGDY  486 (1113)
T ss_pred             ccccccceEeecCc
Confidence                3445555544

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=2.8e-13  Score=133.33  Aligned_cols=235  Identities=17%  Similarity=0.193  Sum_probs=154.2

Q ss_pred             CCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCC---CeEEEEECCCCeeeEE
Q 013274           65 DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYD---HYVKVWDTNCTRVVMN  141 (446)
Q Consensus        65 Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D---~~i~iWd~~~~~~~~~  141 (446)
                      +..|.+||......                  +....|...+.+..|+| ++++|+.++.+   ..|.+||+.+++....
T Consensus       183 ~~~i~i~d~dg~~~------------------~~lt~~~~~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~~~l  243 (429)
T PRK01742        183 PYEVRVADYDGFNQ------------------FIVNRSSQPLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGARKVV  243 (429)
T ss_pred             eEEEEEECCCCCCc------------------eEeccCCCccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCceEEE
Confidence            57899999753211                  11134566677888887 78888887754   3699999988764332


Q ss_pred             EecCCceEEeeeccCCCCceEEEE-eeCCCcEEE--EeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEE
Q 013274          142 FKMPGKVYRTAMSPLAASHMLIAA-GTEDVQVRL--CDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFW  218 (446)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~las-gs~d~~v~v--wd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iW  218 (446)
                      ....+......++|++   ..|+. .+.++.+.|  ||++++. ...+..+...+.+..|+|+++++++++..+|..+||
T Consensus       244 ~~~~g~~~~~~wSPDG---~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~  319 (429)
T PRK01742        244 ASFRGHNGAPAFSPDG---SRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVY  319 (429)
T ss_pred             ecCCCccCceeECCCC---CEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEE
Confidence            2334444556777753   34444 456776554  5666665 455667777888999999999766666678899999


Q ss_pred             EccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCc
Q 013274          219 DIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGM  298 (446)
Q Consensus       219 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (446)
                      ++........                                                                      
T Consensus       320 ~~~~~~~~~~----------------------------------------------------------------------  329 (429)
T PRK01742        320 RMSASGGGAS----------------------------------------------------------------------  329 (429)
T ss_pred             EEECCCCCeE----------------------------------------------------------------------
Confidence            8753210000                                                                      


Q ss_pred             ccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeC-CCc
Q 013274          299 LSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC-MTA  377 (446)
Q Consensus       299 ~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  377 (446)
                            ...+.+  ....|+|||++|+..+.++ +.+||+.+++..... ..     .....+.++|++..++... ...
T Consensus       330 ------~l~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt-~~-----~~~~~~~~sPdG~~i~~~s~~g~  394 (429)
T PRK01742        330 ------LVGGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLS-ST-----FLDESPSISPNGIMIIYSSTQGL  394 (429)
T ss_pred             ------EecCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEec-CC-----CCCCCceECCCCCEEEEEEcCCC
Confidence                  000111  2356899999998887765 566999887532211 11     1112356899988777654 456


Q ss_pred             eEEEEee--cCceEEEecccccceEEEEEcCC
Q 013274          378 VKAFDIW--SGKTCLTFRGHYEYVNCCCFSSQ  407 (446)
Q Consensus       378 ~~~~d~~--~~~~~~~l~gH~~~v~~~~fSpd  407 (446)
                      ..+|++.  +++....+.+|.+.+...+|||-
T Consensus       395 ~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        395 GKVLQLVSADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             ceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence            7788875  57888899999999999999984

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=2.6e-13  Score=119.13  Aligned_cols=197  Identities=16%  Similarity=0.154  Sum_probs=129.7

Q ss_pred             eEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeE
Q 013274          148 VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFR  227 (446)
Q Consensus       148 ~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~  227 (446)
                      ..++.|++.   +.+||+|+.||.|.|||+.|....+.+.+|.-+|++++||++|+. |+|+|.|..|++||+..+.+++
T Consensus        26 a~~~~Fs~~---G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~-LltsS~D~si~lwDl~~gs~l~  101 (405)
T KOG1273|consen   26 AECCQFSRW---GDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRK-LLTSSRDWSIKLWDLLKGSPLK  101 (405)
T ss_pred             cceEEeccC---cceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCE-eeeecCCceeEEEeccCCCcee
Confidence            345556554   458999999999999999999999999999999999999999985 7899999999999999887765


Q ss_pred             EeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccc
Q 013274          228 VLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATA  307 (446)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (446)
                      .+.-                                                                            
T Consensus       102 rirf----------------------------------------------------------------------------  105 (405)
T KOG1273|consen  102 RIRF----------------------------------------------------------------------------  105 (405)
T ss_pred             EEEc----------------------------------------------------------------------------
Confidence            5421                                                                            


Q ss_pred             cccCeEEEEEccCC--CEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEee
Q 013274          308 HYGAVTGLKVTEDG--MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIW  384 (446)
Q Consensus       308 h~~~v~~l~fs~dg--~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~  384 (446)
                       .++|....|+|-.  +.+++ =.+..-.+-++..++...............+....+.+.+.+++++.. +.+.+++..
T Consensus       106 -~spv~~~q~hp~k~n~~va~-~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~  183 (405)
T KOG1273|consen  106 -DSPVWGAQWHPRKRNKCVAT-IMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE  183 (405)
T ss_pred             -cCccceeeeccccCCeEEEE-EecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence             1122222333211  11111 112222222222111110000000000001111235566777777655 567788888


Q ss_pred             cCceEEEecccc-cceEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274          385 SGKTCLTFRGHY-EYVNCCCFSSQDQELYTGGNDRQILVWCPS  426 (446)
Q Consensus       385 ~~~~~~~l~gH~-~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~  426 (446)
                      +-+++..++--+ ..|-.+.|+..|+.|+.-+.|+.||+++..
T Consensus       184 t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~  226 (405)
T KOG1273|consen  184 TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS  226 (405)
T ss_pred             hheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence            888877776555 778899999999999999999999999876

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=4e-14  Score=132.46  Aligned_cols=125  Identities=22%  Similarity=0.416  Sum_probs=104.6

Q ss_pred             ccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEe--cCCceEEeeeccCCCCceEEEEeeCCCcEEE
Q 013274           97 QHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK--MPGKVYRTAMSPLAASHMLIAAGTEDVQVRL  174 (446)
Q Consensus        97 ~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~lasgs~d~~v~v  174 (446)
                      +++.||++.|.++.|.. +|.+|+|||+|-.+.|||.-..+++..+.  +...++++.|.|... ..++++|..|..|++
T Consensus        44 ~eL~GH~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tn-nriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTN-NRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhccccceecceeecC-CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCC-CeEEEeccCcceEEE
Confidence            45679999999999987 89999999999999999988777766554  345688999998764 468899999999999


Q ss_pred             EeCCCC----------ceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCC
Q 013274          175 CDIASG----------AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA  223 (446)
Q Consensus       175 wd~~~~----------~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~  223 (446)
                      +|+...          .....+.-|...|.-++..|+++.++.++++||+||-+|+|..
T Consensus       122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREp  180 (758)
T KOG1310|consen  122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREP  180 (758)
T ss_pred             EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCC
Confidence            999742          2233455688999999999999888999999999999999853

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.55  E-value=6.7e-14  Score=124.04  Aligned_cols=151  Identities=21%  Similarity=0.304  Sum_probs=110.8

Q ss_pred             eEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecC-CCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCC
Q 013274          161 MLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTS-SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRR  239 (446)
Q Consensus       161 ~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~-~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~  239 (446)
                      ..+|++.+++.|++||..++..+..+++|.+.+..+.|... +...+.||+.||+||+||+|.......+.         
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~---------  111 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARIS---------  111 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhee---------
Confidence            46889999999999999999999999999999999999764 45567899999999999999643211111         


Q ss_pred             CcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccc-cCeEEEEEc
Q 013274          240 PPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHY-GAVTGLKVT  318 (446)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~fs  318 (446)
                                                                                       ..+|. .+.++++..
T Consensus       112 -----------------------------------------------------------------~~~~~~~~f~~ld~n  126 (376)
T KOG1188|consen  112 -----------------------------------------------------------------WTQQSGTPFICLDLN  126 (376)
T ss_pred             -----------------------------------------------------------------ccCCCCCcceEeecc
Confidence                                                                             01111 234556666


Q ss_pred             cCCCEEEEee----cCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecc
Q 013274          319 EDGMYLLSAG----SDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRG  394 (446)
Q Consensus       319 ~dg~~l~sgs----~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~g  394 (446)
                      ..+..++.|.    .|-.|.+||++..++.+.                                           .-...
T Consensus       127 ck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~-------------------------------------------~~~eS  163 (376)
T KOG1188|consen  127 CKKNIIACGTELTRSDASVVLWDVRSEQQLLR-------------------------------------------QLNES  163 (376)
T ss_pred             CcCCeEEeccccccCceEEEEEEeccccchhh-------------------------------------------hhhhh
Confidence            5666666653    355677777765432110                                           12246


Q ss_pred             cccceEEEEEcCC-CCEEEEeeCCCcEEEeCCCCC
Q 013274          395 HYEYVNCCCFSSQ-DQELYTGGNDRQILVWCPSRH  428 (446)
Q Consensus       395 H~~~v~~~~fSpd-~~~lvtgs~D~~v~vW~~~~~  428 (446)
                      |.+.|+++.|+|. ..+|+|||.||.|.|+|...+
T Consensus       164 H~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d  198 (376)
T KOG1188|consen  164 HNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD  198 (376)
T ss_pred             ccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence            9999999999996 578999999999999988744

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.55  E-value=1e-12  Score=131.85  Aligned_cols=258  Identities=17%  Similarity=0.229  Sum_probs=160.0

Q ss_pred             cceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEee-cCCcEEEEE
Q 013274           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYP-VDTGLFVTG  122 (446)
Q Consensus        44 ~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~-~~~~~l~s~  122 (446)
                      +.-..+.|+|- ...++++..-..|+|||-+.++.+..      .        .........|+.+.+.. .|..++++|
T Consensus      1065 ~~pk~~~~hpf-~p~i~~ad~r~~i~vwd~e~~~~l~~------F--------~n~~~~~t~Vs~l~liNe~D~aLlLta 1129 (1387)
T KOG1517|consen 1065 QPPKTLKFHPF-EPQIAAADDRERIRVWDWEKGRLLNG------F--------DNGAFPDTRVSDLELINEQDDALLLTA 1129 (1387)
T ss_pred             CCCceeeecCC-CceeEEcCCcceEEEEecccCceecc------c--------cCCCCCCCccceeeeecccchhheeee
Confidence            34456778764 56788887778899999987764321      0        00011234566666643 345689999


Q ss_pred             eCCCeEEEEECC-----CCeeeEEEe-cCCc----eE-EeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeee-CCC
Q 013274          123 SYDHYVKVWDTN-----CTRVVMNFK-MPGK----VY-RTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS-GHR  190 (446)
Q Consensus       123 s~D~~i~iWd~~-----~~~~~~~~~-~~~~----~~-~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~-~h~  190 (446)
                      +.||.||||+--     ..+.+..+. +.+.    .. .+.+.-.-..+.++++| .-..|+|||+........+. +-.
T Consensus      1130 s~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tG-d~r~IRIWDa~~E~~~~diP~~s~ 1208 (1387)
T KOG1517|consen 1130 SSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTG-DVRSIRIWDAHKEQVVADIPYGSS 1208 (1387)
T ss_pred             ccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecC-CeeEEEEEecccceeEeecccCCC
Confidence            999999999732     223333322 1111    00 01111111223445554 46789999999887776664 455


Q ss_pred             CCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccc
Q 013274          191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRS  270 (446)
Q Consensus       191 ~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (446)
                      ..|++++-+.....+++.|-.||.||+||.|....-                                            
T Consensus      1209 t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d-------------------------------------------- 1244 (1387)
T KOG1517|consen 1209 TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD-------------------------------------------- 1244 (1387)
T ss_pred             ccceeecccccCCceEEEeecCCceEEeecccCCcc--------------------------------------------
Confidence            667777655444457899999999999998753100                                            


Q ss_pred             cCCCceeecccceeecCCccccccCCCcccccccccccccC--eEEEEEccCCC-EEEEeecCCcEEEEecCcCceeeee
Q 013274          271 ANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGA--VTGLKVTEDGM-YLLSAGSDSRIRLWDVESGRNTLVN  347 (446)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~fs~dg~-~l~sgs~D~~i~lWd~~~~~~~~~~  347 (446)
                                                   +.......|...  |..+.+-+.|- .|+||+.||.|++||++....  ..
T Consensus      1245 -----------------------------s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~--e~ 1293 (1387)
T KOG1517|consen 1245 -----------------------------SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK--ET 1293 (1387)
T ss_pred             -----------------------------ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc--cc
Confidence                                         000011234444  88888888775 499999999999999986310  00


Q ss_pred             eeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCC
Q 013274          348 FETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR  427 (446)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~  427 (446)
                      +...                          +.-|+.            .+.++++..+++...+||||. +.|+||+..+
T Consensus      1294 ~~~i--------------------------v~~~~y------------Gs~lTal~VH~hapiiAsGs~-q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1294 FLTI--------------------------VAHWEY------------GSALTALTVHEHAPIIASGSA-QLIKIYSLSG 1334 (1387)
T ss_pred             ccee--------------------------eecccc------------CccceeeeeccCCCeeeecCc-ceEEEEecCh
Confidence            1000                          001111            014789999999999999999 9999999987


Q ss_pred             CCCC
Q 013274          428 HISD  431 (446)
Q Consensus       428 ~~~~  431 (446)
                      ..+.
T Consensus      1335 ~~l~ 1338 (1387)
T KOG1517|consen 1335 EQLN 1338 (1387)
T ss_pred             hhhc
Confidence            6554

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.54  E-value=2.2e-13  Score=129.49  Aligned_cols=145  Identities=21%  Similarity=0.385  Sum_probs=114.1

Q ss_pred             eCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCe-----
Q 013274           63 ASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR-----  137 (446)
Q Consensus        63 s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~-----  137 (446)
                      |.-|.|-||+++..-... .+.+.+.            -....|+.+.|.|.|..+||.+++|+.|++|.+..+.     
T Consensus       600 g~gG~iai~el~~PGrLP-Dgv~p~l------------~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~  666 (1012)
T KOG1445|consen  600 GSGGVIAIYELNEPGRLP-DGVMPGL------------FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE  666 (1012)
T ss_pred             CCCceEEEEEcCCCCCCC-ccccccc------------ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCccc
Confidence            567899999997542211 1222111            1234588889999999999999999999999986432     


Q ss_pred             --eeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCc
Q 013274          138 --VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGA  214 (446)
Q Consensus       138 --~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~  214 (446)
                        +...+. +..+++++.|+|+..  .+|++++.|-+|++||+.+++....|.||++.|..++|||+|+. ++|.+.||+
T Consensus       667 ~tPe~~lt~h~eKI~slRfHPLAa--dvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~-~AtVcKDg~  743 (1012)
T KOG1445|consen  667 MTPEKILTIHGEKITSLRFHPLAA--DVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRR-IATVCKDGT  743 (1012)
T ss_pred             CCcceeeecccceEEEEEecchhh--hHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcc-eeeeecCce
Confidence              222222 235688999999865  47899999999999999999999999999999999999999985 799999999


Q ss_pred             EEEEEccCC
Q 013274          215 IRFWDIRRA  223 (446)
Q Consensus       215 I~iWd~~~~  223 (446)
                      |++|..++.
T Consensus       744 ~rVy~Prs~  752 (1012)
T KOG1445|consen  744 LRVYEPRSR  752 (1012)
T ss_pred             EEEeCCCCC
Confidence            999998764

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.53  E-value=1.4e-12  Score=132.71  Aligned_cols=252  Identities=21%  Similarity=0.213  Sum_probs=156.4

Q ss_pred             cccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCC-------CeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCC
Q 013274           98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNC-------TRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTED  169 (446)
Q Consensus        98 ~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d  169 (446)
                      +.+.|+..|...+.++..+.+|+|||.||+||+|++..       .+...++. ..+.+..+.+.+.   ...+|.|+.|
T Consensus      1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~---~~~~Av~t~D 1119 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGN---GDQFAVSTKD 1119 (1431)
T ss_pred             hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccC---CCeEEEEcCC
Confidence            45678889999899888889999999999999999752       12233444 3445666666653   3578999999


Q ss_pred             CcEEEEeCCCC--c-----eeeeeeCC-CCC-eEEEEEecCCCe-EEEEeeCCCcEEEEEccCCceeEEeecccccccCC
Q 013274          170 VQVRLCDIASG--A-----ISQTLSGH-RDG-IMTVEWSTSSEW-ILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRR  239 (446)
Q Consensus       170 ~~v~vwd~~~~--~-----~~~~l~~h-~~~-v~sv~~s~~~~~-~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~  239 (446)
                      |.|++.+++-.  .     ..+....+ .+. |..-+|....+. .++.+..-+.|..||+|.....-.++         
T Consensus      1120 G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk--------- 1190 (1431)
T KOG1240|consen 1120 GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLK--------- 1190 (1431)
T ss_pred             CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhh---------
Confidence            99999998752  1     11111112 222 333334333332 56677777889999988632110000         


Q ss_pred             CcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEcc
Q 013274          240 PPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE  319 (446)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~  319 (446)
                                                                                       .....|.|++++.+|
T Consensus      1191 -----------------------------------------------------------------~~~~hG~vTSi~idp 1205 (1431)
T KOG1240|consen 1191 -----------------------------------------------------------------NQLRHGLVTSIVIDP 1205 (1431)
T ss_pred             -----------------------------------------------------------------cCccccceeEEEecC
Confidence                                                                             011246799999999


Q ss_pred             CCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCC---cEEEEeC---CCceEEEEeecCceEEEec
Q 013274          320 DGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDP---AVVFVPC---MTAVKAFDIWSGKTCLTFR  393 (446)
Q Consensus       320 dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---~~~~~~~d~~~~~~~~~l~  393 (446)
                      .+.+++.|+..|.+-+||++-+....   ............+...+-.   ...++++   .+.+..|++.+|....+|.
T Consensus      1206 ~~~WlviGts~G~l~lWDLRF~~~i~---sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~ 1282 (1431)
T KOG1240|consen 1206 WCNWLVIGTSRGQLVLWDLRFRVPIL---SWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLW 1282 (1431)
T ss_pred             CceEEEEecCCceEEEEEeecCceee---cccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEE
Confidence            99999999999999999997542110   0000001122223333221   2333332   3578899998886555443


Q ss_pred             cc-------------------ccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCC
Q 013274          394 GH-------------------YEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI  429 (446)
Q Consensus       394 gH-------------------~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~  429 (446)
                      .-                   .-...-+++-.-+..+.||+.|..||.||+..+.
T Consensus      1283 ~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1283 ASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred             cCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence            22                   1112233343446788899999999999998775

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.49  E-value=9.5e-13  Score=120.00  Aligned_cols=199  Identities=18%  Similarity=0.275  Sum_probs=136.0

Q ss_pred             EEEeecCCcEEEEEeCCCeEEEEECCCCeeeEE-EecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeee
Q 013274          109 AIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMN-FKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS  187 (446)
Q Consensus       109 ~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~  187 (446)
                      +++. .++..+++++.||++|+|+..+...+.. ..+.+.+..+.|+++   ...|++-+.| ..+||+++++..+....
T Consensus       150 vaf~-~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~d---gk~lasig~d-~~~VW~~~~g~~~a~~t  224 (398)
T KOG0771|consen  150 VAFN-GDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPD---GKFLASIGAD-SARVWSVNTGAALARKT  224 (398)
T ss_pred             EEEc-CCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCC---CcEEEEecCC-ceEEEEeccCchhhhcC
Confidence            3444 4788999999999999999665554433 345667888888875   4578888888 99999999997665554


Q ss_pred             C--CCCCeEEEEEecCC---Ce-EEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCc
Q 013274          188 G--HRDGIMTVEWSTSS---EW-ILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSV  261 (446)
Q Consensus       188 ~--h~~~v~sv~~s~~~---~~-~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (446)
                      .  -......+.|+.++   .. +++.-..-+.|+.||+...+--..+                                
T Consensus       225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l--------------------------------  272 (398)
T KOG0771|consen  225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFL--------------------------------  272 (398)
T ss_pred             CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccccc--------------------------------
Confidence            2  23344566777665   22 2223333456777765421100000                                


Q ss_pred             CCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcC
Q 013274          262 KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG  341 (446)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~  341 (446)
                                                 ...           + .......|++|+.|+||++++-|+.||.|-+++..+-
T Consensus       273 ---------------------------~~~-----------~-~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~l  313 (398)
T KOG0771|consen  273 ---------------------------RLR-----------K-KIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSL  313 (398)
T ss_pred             ---------------------------chh-----------h-hhhccCcceeEEEcCCCcEEEEeccCCcEEEEEecee
Confidence                                       000           0 0011234999999999999999999999999987753


Q ss_pred             ceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEE
Q 013274          342 RNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQIL  421 (446)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~  421 (446)
                      +.    +.                                        ..-+.|..-|+.+.|+||.+++++.|.|..+.
T Consensus       314 q~----~~----------------------------------------~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~  349 (398)
T KOG0771|consen  314 QR----LQ----------------------------------------YVKEAHLGFVTGLTFSPDSRYLASVSSDNEAA  349 (398)
T ss_pred             ee----eE----------------------------------------eehhhheeeeeeEEEcCCcCcccccccCCcee
Confidence            21    00                                        11246889999999999999999999999999


Q ss_pred             EeCCCC
Q 013274          422 VWCPSR  427 (446)
Q Consensus       422 vW~~~~  427 (446)
                      |-.+..
T Consensus       350 v~~l~v  355 (398)
T KOG0771|consen  350 VTKLAV  355 (398)
T ss_pred             EEEEee
Confidence            987764

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=4.6e-12  Score=124.66  Aligned_cols=210  Identities=15%  Similarity=0.080  Sum_probs=134.1

Q ss_pred             CCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCC---CcEEEEeCCCCce--eeeeeCCCCCeEEEEEe
Q 013274          125 DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTED---VQVRLCDIASGAI--SQTLSGHRDGIMTVEWS  199 (446)
Q Consensus       125 D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d---~~v~vwd~~~~~~--~~~l~~h~~~v~sv~~s  199 (446)
                      +.+|.+||.+.............+....++|++   ..|+..+.+   ..|++||++++..  +..+.+|   ..+++|+
T Consensus       183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG---~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wS  256 (429)
T PRK01742        183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDG---SKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFS  256 (429)
T ss_pred             eEEEEEECCCCCCceEeccCCCccccceEcCCC---CEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeEC
Confidence            579999998765432222233446677788754   355555432   4799999998753  3334444   3468999


Q ss_pred             cCCCeEEEEeeCCCcEEEEEcc--CCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCcee
Q 013274          200 TSSEWILVTGGCDGAIRFWDIR--RAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVR  277 (446)
Q Consensus       200 ~~~~~~l~S~s~Dg~I~iWd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (446)
                      |+++.++++.+.+|.+.||.+.  ++.. ..                                                 
T Consensus       257 PDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~-------------------------------------------------  286 (429)
T PRK01742        257 PDGSRLAFASSKDGVLNIYVMGANGGTP-SQ-------------------------------------------------  286 (429)
T ss_pred             CCCCEEEEEEecCCcEEEEEEECCCCCe-Ee-------------------------------------------------
Confidence            9999765555678887777542  2210 00                                                 


Q ss_pred             ecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEee-cCCcEEEEecCcCceeeeeeeEEEeecC
Q 013274          278 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG-SDSRIRLWDVESGRNTLVNFETVRLQTS  356 (446)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs-~D~~i~lWd~~~~~~~~~~~~~~~~~~~  356 (446)
                                                 ...+...+....|+|||+.|+..+ .++..+||++.........+     ...
T Consensus       287 ---------------------------lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-----~~~  334 (429)
T PRK01742        287 ---------------------------LTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-----GGR  334 (429)
T ss_pred             ---------------------------eccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-----cCC
Confidence                                       011223456788999999776554 57888999875421111111     111


Q ss_pred             CCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCC
Q 013274          357 KPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP  425 (446)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~  425 (446)
                      . ....++|++..++..+...+..||+.+++.......+  ....++|||||++|+.++.++.+.+|.+
T Consensus       335 ~-~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~  400 (429)
T PRK01742        335 G-YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQL  400 (429)
T ss_pred             C-CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence            1 2356788988887766677777999888754332332  2357889999999999999998888754

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.48  E-value=9.6e-11  Score=111.57  Aligned_cols=273  Identities=12%  Similarity=0.162  Sum_probs=156.3

Q ss_pred             CccceeEEEeecCCCCEEEEe-eCCCcEEEEEccc-CcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEE
Q 013274           42 HKGSINSLQVDLTEERYLLSG-ASDSSVAVYDVQR-ATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF  119 (446)
Q Consensus        42 H~~~v~~l~~s~~~~~~l~s~-s~Dg~i~lWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l  119 (446)
                      +.+....|.++| ++++|..+ ..++.|.+|+++. +..       .      ........+   ....+.+.| +++++
T Consensus        33 ~~~~~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~g~l-------~------~~~~~~~~~---~p~~i~~~~-~g~~l   94 (330)
T PRK11028         33 VPGQVQPMVISP-DKRHLYVGVRPEFRVLSYRIADDGAL-------T------FAAESPLPG---SPTHISTDH-QGRFL   94 (330)
T ss_pred             cCCCCccEEECC-CCCEEEEEECCCCcEEEEEECCCCce-------E------EeeeecCCC---CceEEEECC-CCCEE
Confidence            345677899997 56766544 5688999999862 211       0      000000111   233455665 77777


Q ss_pred             EEEeC-CCeEEEEECCC-Ce---eeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceee-------eee
Q 013274          120 VTGSY-DHYVKVWDTNC-TR---VVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ-------TLS  187 (446)
Q Consensus       120 ~s~s~-D~~i~iWd~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~-------~l~  187 (446)
                      +++++ ++.|.+|+++. +.   .+..+......+.+.+++..  ..++++...++.|.+||+++...+.       .+.
T Consensus        95 ~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g--~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~  172 (330)
T PRK11028         95 FSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDN--RTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV  172 (330)
T ss_pred             EEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCC--CEEEEeeCCCCEEEEEEECCCCcccccCCCceecC
Confidence            77664 89999999963 32   22222222234556666642  3455666778999999998632221       111


Q ss_pred             CCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCC-ceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCc
Q 013274          188 GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA-GCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAP  266 (446)
Q Consensus       188 ~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (446)
                      . ......++|+|++++++++...+++|.+||+... +.+..+..    +..                            
T Consensus       173 ~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~----~~~----------------------------  219 (330)
T PRK11028        173 E-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQT----LDM----------------------------  219 (330)
T ss_pred             C-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEE----Eec----------------------------
Confidence            1 2345789999999976555555899999998632 11111100    000                            


Q ss_pred             cccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEee-cCCcEEEEecCcCceee
Q 013274          267 QKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG-SDSRIRLWDVESGRNTL  345 (446)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs-~D~~i~lWd~~~~~~~~  345 (446)
                                       .           +.       ...+......+.|+|+|++|.++. .+++|.+|++.......
T Consensus       220 -----------------~-----------p~-------~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~  264 (330)
T PRK11028        220 -----------------M-----------PA-------DFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVL  264 (330)
T ss_pred             -----------------C-----------CC-------cCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeE
Confidence                             0           00       000111234688999999888774 47899999996532211


Q ss_pred             eeeeEEEeecCCCeEEEEcCCCcEEEEeC--CCceEEEEee--cCce--EEEecccccceEEEEE
Q 013274          346 VNFETVRLQTSKPIQLATTQDPAVVFVPC--MTAVKAFDIW--SGKT--CLTFRGHYEYVNCCCF  404 (446)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~--~~~~--~~~l~gH~~~v~~~~f  404 (446)
                      ....... ....+..+.+++++..++++.  .+.+.+|++.  ++.+  ...+.. .....|++|
T Consensus       265 ~~~~~~~-~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~~~~-g~~P~~~~~  327 (330)
T PRK11028        265 SFEGHQP-TETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELGRYAV-GQGPMWVSV  327 (330)
T ss_pred             EEeEEEe-ccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEcccccc-CCCceEEEE
Confidence            1111111 112455688999999888764  3578999874  3333  223332 334566665

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.47  E-value=4.2e-11  Score=118.59  Aligned_cols=294  Identities=17%  Similarity=0.141  Sum_probs=192.2

Q ss_pred             EeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC--cEEEEEeCCCe
Q 013274           50 QVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT--GLFVTGSYDHY  127 (446)
Q Consensus        50 ~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~--~~l~s~s~D~~  127 (446)
                      .|++ |+++++-. .+..|+||-..++.+..                 .+.+|...+.++.+.+...  .++.+++.||+
T Consensus        23 vfSn-D~k~l~~~-~~~~V~VyS~~Tg~~i~-----------------~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~   83 (792)
T KOG1963|consen   23 VFSN-DAKFLFLC-TGNFVKVYSTATGECIT-----------------SLEDHTAPLTSVIVLPSSENANYLIVCSLDGT   83 (792)
T ss_pred             cccc-CCcEEEEe-eCCEEEEEecchHhhhh-----------------hcccccCccceeeecCCCccceEEEEEecCcc
Confidence            4664 67766555 55679999998876521                 2357888888888876555  57789999999


Q ss_pred             EEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEee-CC------------CcEEEEeCCCC--ceeeeeeCCCCC
Q 013274          128 VKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGT-ED------------VQVRLCDIASG--AISQTLSGHRDG  192 (446)
Q Consensus       128 i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs-~d------------~~v~vwd~~~~--~~~~~l~~h~~~  192 (446)
                      |++||-..+.+++++....+++...+.+.......++..+ .|            ++++-+.+.+-  .....+..|.. 
T Consensus        84 I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-  162 (792)
T KOG1963|consen   84 IRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-  162 (792)
T ss_pred             EEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-
Confidence            9999999999999998877776665543221111222111 11            11111121111  11112233333 


Q ss_pred             eEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccC
Q 013274          193 IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSAN  272 (446)
Q Consensus       193 v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (446)
                      -.+|.+++.+..  .....+..+.+|+..+..  +..                                           
T Consensus       163 ~~~I~~~~~ge~--~~i~~~~~~~~~~v~~~~--~~~-------------------------------------------  195 (792)
T KOG1963|consen  163 PKSIVDNNSGEF--KGIVHMCKIHIYFVPKHT--KHT-------------------------------------------  195 (792)
T ss_pred             CccEEEcCCceE--EEEEEeeeEEEEEecccc--eee-------------------------------------------
Confidence            356666766653  334445567777754321  000                                           


Q ss_pred             CCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCc-CceeeeeeeEE
Q 013274          273 GNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES-GRNTLVNFETV  351 (446)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~-~~~~~~~~~~~  351 (446)
                                                 ........|.-.+++.++||++.++++|..||+|.+|.-.. .... .....+
T Consensus       196 ---------------------------~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~-~t~t~l  247 (792)
T KOG1963|consen  196 ---------------------------SSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS-ETCTLL  247 (792)
T ss_pred             ---------------------------ccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc-ccceEE
Confidence                                       00011234666689999999999999999999999995332 1111 112334


Q ss_pred             EeecCCCeEEEEcCCCcEEEEeCCCc-eEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCCC
Q 013274          352 RLQTSKPIQLATTQDPAVVFVPCMTA-VKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS  430 (446)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~~  430 (446)
                      ..+......+++++++..+++++... ...|.+.+++ ..-|+.-.++|..+.+|||+...+..-.|+.|.+-....=..
T Consensus       248 HWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~  326 (792)
T KOG1963|consen  248 HWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEI  326 (792)
T ss_pred             EecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhh
Confidence            55566778899999999999987754 5789999988 566777889999999999999999999999999987754444


Q ss_pred             CCcCCCccC
Q 013274          431 DGVDAGPMQ  439 (446)
Q Consensus       431 ~~~~~~~~~  439 (446)
                      ....+|...
T Consensus       327 k~tIsgi~~  335 (792)
T KOG1963|consen  327 KSTISGIKP  335 (792)
T ss_pred             hhhccCccC
Confidence            445555443

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.46  E-value=3.8e-12  Score=119.13  Aligned_cols=270  Identities=18%  Similarity=0.207  Sum_probs=158.2

Q ss_pred             CCccceeEEEeecCCCCEEEEeeCCCcEEEE-EcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEE
Q 013274           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVY-DVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF  119 (446)
Q Consensus        41 ~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lW-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l  119 (446)
                      .|+..|-++.|+.. .. +...++|..+.+| |+.+....     +....+-++    ...-|.++-..-  -....+.|
T Consensus        12 r~~e~vc~v~w~~~-ee-i~~~~dDh~~~~~~~~~~~s~~-----~~~~p~df~----pt~~h~~~rs~~--~g~~~d~~   78 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSN-EE-IYFVSDDHQIFKWSDVSRDSVE-----VAKLPDDFV----PTDMHLGGRSSG--GGKGSDTL   78 (737)
T ss_pred             ccceeEEeeccccc-ce-EEEeccCceEEEeecccchhhh-----hhhCCcccC----CccccccccccC--CCCCcceE
Confidence            67777878888753 34 5556666666666 44433210     000000000    000111100000  00124578


Q ss_pred             EEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEE
Q 013274          120 VTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEW  198 (446)
Q Consensus       120 ~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~  198 (446)
                      +.++.||.+.+-+-. +++.+... +.+.+.+-.+.+   ++.-|++++.||.|++|. ++|.+..++.....+|.|++|
T Consensus        79 ~i~s~DGkf~il~k~-~rVE~sv~AH~~A~~~gRW~~---dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W  153 (737)
T KOG1524|consen   79 LICSNDGRFVILNKS-ARVERSISAHAAAISSGRWSP---DGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARW  153 (737)
T ss_pred             EEEcCCceEEEeccc-chhhhhhhhhhhhhhhcccCC---CCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEE
Confidence            889999999887632 33333322 222233333444   444688889999999998 567666667677889999999


Q ss_pred             ecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceee
Q 013274          199 STSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQ  278 (446)
Q Consensus       199 s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (446)
                      .|+.+.++.+.+.  .+.|=-+..+                                                       
T Consensus       154 ~p~S~~vl~c~g~--h~~IKpL~~n-------------------------------------------------------  176 (737)
T KOG1524|consen  154 APNSNSIVFCQGG--HISIKPLAAN-------------------------------------------------------  176 (737)
T ss_pred             CCCCCceEEecCC--eEEEeecccc-------------------------------------------------------
Confidence            9998876655442  2222111100                                                       


Q ss_pred             cccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCC
Q 013274          279 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKP  358 (446)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~  358 (446)
                                           ...-++.+|.|-|.+++|++....++|||.|-+.++||... +..+   .. ..+.-..
T Consensus       177 ---------------------~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf---~S-~~~ey~I  230 (737)
T KOG1524|consen  177 ---------------------SKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLF---TS-AAEEYAI  230 (737)
T ss_pred             ---------------------cceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC-cccc---cC-Chhccce
Confidence                                 00113568999999999999999999999999999999653 2211   10 0111233


Q ss_pred             eEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEe
Q 013274          359 IQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW  423 (446)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW  423 (446)
                      ..+++.|+ ...++.+-...+           -=.-..+.|..++|||||..++.|...|.+.+=
T Consensus       231 TSva~npd-~~~~v~S~nt~R-----------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  231 TSVAFNPE-KDYLLWSYNTAR-----------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             eeeeeccc-cceeeeeeeeee-----------ecCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence            45677777 332222222222           112245789999999999999988887776653

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.46  E-value=1.1e-12  Score=125.56  Aligned_cols=170  Identities=17%  Similarity=0.255  Sum_probs=118.2

Q ss_pred             ccceeccccce--eEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCcc
Q 013274           26 RLSTLQLSNYK--EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHK  103 (446)
Q Consensus        26 ~l~~~~~~~~~--~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~  103 (446)
                      ++..++.+.+.  ..+++|+..|++++++- +|+.++||+.|+.|.+|+.+-.                   ......|.
T Consensus        34 rlliyD~ndG~llqtLKgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~klE-------------------G~LkYSH~   93 (1081)
T KOG1538|consen   34 RLLVYDTSDGTLLQPLKGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSKLE-------------------GILKYSHN   93 (1081)
T ss_pred             EEEEEeCCCcccccccccccceEEEEEEcc-CCceeccCCCceeEEEeccccc-------------------ceeeeccC
Confidence            45445554433  34689999999999984 7889999999999999985421                   11124789


Q ss_pred             ccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc--
Q 013274          104 YAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA--  181 (446)
Q Consensus       104 ~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~--  181 (446)
                      ..|.|+.|.| -+.+|+||+.. ..-+|+.+...+. +......+.+.++..   ++.+++.|-.||+|.+-+-....  
T Consensus        94 D~IQCMsFNP-~~h~LasCsLs-dFglWS~~qK~V~-K~kss~R~~~CsWtn---DGqylalG~~nGTIsiRNk~gEek~  167 (1081)
T KOG1538|consen   94 DAIQCMSFNP-ITHQLASCSLS-DFGLWSPEQKSVS-KHKSSSRIICCSWTN---DGQYLALGMFNGTISIRNKNGEEKV  167 (1081)
T ss_pred             CeeeEeecCc-hHHHhhhcchh-hccccChhhhhHH-hhhhheeEEEeeecC---CCcEEEEeccCceEEeecCCCCcce
Confidence            9999999887 56789999875 5778987653332 233333455555554   56799999999999998653322  


Q ss_pred             eeeeeeCCCCCeEEEEEecCCC----eEEEEeeCCCcEEEEEcc
Q 013274          182 ISQTLSGHRDGIMTVEWSTSSE----WILVTGGCDGAIRFWDIR  221 (446)
Q Consensus       182 ~~~~l~~h~~~v~sv~~s~~~~----~~l~S~s~Dg~I~iWd~~  221 (446)
                      .+.+--|.+.+|++|+|+|...    .+++...+..++-++.+.
T Consensus       168 ~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls  211 (1081)
T KOG1538|consen  168 KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS  211 (1081)
T ss_pred             EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec
Confidence            2233346888999999999752    245666666666666654

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.46  E-value=1.1e-12  Score=118.95  Aligned_cols=157  Identities=24%  Similarity=0.404  Sum_probs=118.1

Q ss_pred             cEeEEEEeecCCcEEEEEeCCCeEEEEECCCCe-------eeEEEecCC---ceEEeeeccCCCCceEEEEeeCCCcEEE
Q 013274          105 AISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR-------VVMNFKMPG---KVYRTAMSPLAASHMLIAAGTEDVQVRL  174 (446)
Q Consensus       105 ~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~-------~~~~~~~~~---~~~~~~~~~~~~~~~~lasgs~d~~v~v  174 (446)
                      +|.++.+.......+|||+.|..|++|-++...       +...-.+..   .++.+-|.+   +..++|+|+.++.|.+
T Consensus        15 pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p---~gelLASg~D~g~v~l   91 (434)
T KOG1009|consen   15 PVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP---DGELLASGGDGGEVFL   91 (434)
T ss_pred             ceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC---CcCeeeecCCCceEEE
Confidence            566777776555599999999999999876432       222222233   345555554   5679999999999999


Q ss_pred             EeCC--------C-----C---ceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccC
Q 013274          175 CDIA--------S-----G---AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGR  238 (446)
Q Consensus       175 wd~~--------~-----~---~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~  238 (446)
                      |-..        +     .   ...+.+.+|.+.+..++|+|++.. +++++.|+++++||+..+.....+         
T Consensus        92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~-l~s~s~dns~~l~Dv~~G~l~~~~---------  161 (434)
T KOG1009|consen   92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNF-LVSGSVDNSVRLWDVHAGQLLAIL---------  161 (434)
T ss_pred             EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCce-eeeeeccceEEEEEeccceeEeec---------
Confidence            9765        3     1   124567899999999999999875 799999999999999876533221         


Q ss_pred             CCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEc
Q 013274          239 RPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVT  318 (446)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs  318 (446)
                                                                                         -+|...+..++|.
T Consensus       162 -------------------------------------------------------------------~dh~~yvqgvawD  174 (434)
T KOG1009|consen  162 -------------------------------------------------------------------DDHEHYVQGVAWD  174 (434)
T ss_pred             -------------------------------------------------------------------cccccccceeecc
Confidence                                                                               2466678889999


Q ss_pred             cCCCEEEEeecCCcEEEEecCcC
Q 013274          319 EDGMYLLSAGSDSRIRLWDVESG  341 (446)
Q Consensus       319 ~dg~~l~sgs~D~~i~lWd~~~~  341 (446)
                      |-++|+++-+.|...+.+.+...
T Consensus       175 pl~qyv~s~s~dr~~~~~~~~~~  197 (434)
T KOG1009|consen  175 PLNQYVASKSSDRHPEGFSAKLK  197 (434)
T ss_pred             hhhhhhhhhccCcccceeeeeee
Confidence            99999999999998888876653

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.45  E-value=3.7e-11  Score=113.55  Aligned_cols=288  Identities=18%  Similarity=0.240  Sum_probs=179.0

Q ss_pred             CCccceeEEEeecCCCCEEEEeeC-CCcEEEEEcccCcCCCCCCccccccceEEeccccccCcc-ccEeEEEEeecCCcE
Q 013274           41 PHKGSINSLQVDLTEERYLLSGAS-DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHK-YAISSAIWYPVDTGL  118 (446)
Q Consensus        41 ~H~~~v~~l~~s~~~~~~l~s~s~-Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~-~~V~~~~~~~~~~~~  118 (446)
                      .|...-+.|.++| ||+||++.|. --.|++||+..-..              .++     .|. ..|......+.|-.-
T Consensus        49 e~p~ast~ik~s~-DGqY~lAtG~YKP~ikvydlanLSL--------------KFE-----RhlDae~V~feiLsDD~SK  108 (703)
T KOG2321|consen   49 EMPTASTRIKVSP-DGQYLLATGTYKPQIKVYDLANLSL--------------KFE-----RHLDAEVVDFEILSDDYSK  108 (703)
T ss_pred             CCccccceeEecC-CCcEEEEecccCCceEEEEccccee--------------eee-----ecccccceeEEEeccchhh
Confidence            5778889999997 6777665555 56899999875431              111     121 122222222222223


Q ss_pred             EEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEE
Q 013274          119 FVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEW  198 (446)
Q Consensus       119 l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~  198 (446)
                      ++---.|.+|.+-.-- |. -....++.....+.++-.  +..+++.|+ ...|+-++++.|..+..+....+++++|..
T Consensus       109 ~v~L~~DR~IefHak~-G~-hy~~RIP~~GRDm~y~~~--scDly~~gs-g~evYRlNLEqGrfL~P~~~~~~~lN~v~i  183 (703)
T KOG2321|consen  109 SVFLQNDRTIEFHAKY-GR-HYRTRIPKFGRDMKYHKP--SCDLYLVGS-GSEVYRLNLEQGRFLNPFETDSGELNVVSI  183 (703)
T ss_pred             heEeecCceeeehhhc-Ce-eeeeecCcCCccccccCC--CccEEEeec-CcceEEEEccccccccccccccccceeeee
Confidence            3333445555554211 11 111122222223333322  233444443 457999999999999989888899999999


Q ss_pred             ecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceee
Q 013274          199 STSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQ  278 (446)
Q Consensus       199 s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (446)
                      ++-.. +|++|+.||.|-.||.|+...+..++......                                          
T Consensus       184 n~~hg-Lla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~------------------------------------------  220 (703)
T KOG2321|consen  184 NEEHG-LLACGTEDGVVEFWDPRDKSRVGTLDAASSVN------------------------------------------  220 (703)
T ss_pred             cCccc-eEEecccCceEEEecchhhhhheeeecccccC------------------------------------------
Confidence            98876 57889999999999999865554443211100                                          


Q ss_pred             cccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCC
Q 013274          279 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKP  358 (446)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~  358 (446)
                                     .+++        ......|+++.|+.+|-.++.|+.+|.+.|||+.+.++.++.   ......+.
T Consensus       221 ---------------s~pg--------~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~k---dh~~e~pi  274 (703)
T KOG2321|consen  221 ---------------SHPG--------GDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVK---DHGYELPI  274 (703)
T ss_pred             ---------------CCcc--------ccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeec---ccCCccce
Confidence                           0000        011235999999999999999999999999999987654321   00011122


Q ss_pred             eEEEEcC--CCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEe
Q 013274          359 IQLATTQ--DPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW  423 (446)
Q Consensus       359 ~~~~~~~--~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW  423 (446)
                      ..+.+-+  +...+++.....+++||-.+|+....+.--. .++++++=|++.++.++-.+..+..+
T Consensus       275 ~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~-~lND~C~~p~sGm~f~Ane~~~m~~y  340 (703)
T KOG2321|consen  275 KKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTS-DLNDFCFVPGSGMFFTANESSKMHTY  340 (703)
T ss_pred             eeecccccCCCceEEecchHHhhhcccccCCceeeccccC-CcCceeeecCCceEEEecCCCcceeE
Confidence            2233322  2334444444578999999999887766433 49999999999999999888777666

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.44  E-value=2.6e-11  Score=119.37  Aligned_cols=247  Identities=16%  Similarity=0.175  Sum_probs=162.5

Q ss_pred             CeEEEEECCCC-eeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCce--ee----eeeCCCCCeEEEEE
Q 013274          126 HYVKVWDTNCT-RVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI--SQ----TLSGHRDGIMTVEW  198 (446)
Q Consensus       126 ~~i~iWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~--~~----~l~~h~~~v~sv~~  198 (446)
                      +.+.+|++... .+...+.....+.++.++++.+  .+++.|+.+|+|.+||++.+..  ..    ....|..+++++.|
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p--~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW  299 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDP--NLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW  299 (555)
T ss_pred             ceEEEEecCCCCCceEEEecCCceeEEEeccCCc--ceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence            47999999876 5666777778899999999865  5899999999999999987754  22    23469999999999


Q ss_pred             ecCCCe-EEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCcee
Q 013274          199 STSSEW-ILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVR  277 (446)
Q Consensus       199 s~~~~~-~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (446)
                      ..+... -|+|+|.||.|..|+++.-..-.     .....                        ..              
T Consensus       300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~-----e~~~~------------------------~~--------------  336 (555)
T KOG1587|consen  300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPV-----EGLLL------------------------ES--------------  336 (555)
T ss_pred             eccCCCCceEEEecCCcEeeeeccccccch-----hhccc------------------------cc--------------
Confidence            765432 25799999999999887432100     00000                        00              


Q ss_pred             ecccceeecCCccccccCCCcccccccccccccCeEEEEEccC-CCEEEEeecCCcEEEEecCcCceee-eeee---EEE
Q 013274          278 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED-GMYLLSAGSDSRIRLWDVESGRNTL-VNFE---TVR  352 (446)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~d-g~~l~sgs~D~~i~lWd~~~~~~~~-~~~~---~~~  352 (446)
                                     ..+.    .. .. .-...+++++|.+. -..++.|+.+|.|.-=+-...+... ..++   ...
T Consensus       337 ---------------~~~~----~~-~~-~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~  395 (555)
T KOG1587|consen  337 ---------------KKHK----GQ-QS-SKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFI  395 (555)
T ss_pred             ---------------cccc----cc-cc-ccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccccc
Confidence                           0000    00 00 00123788899874 3567789999988652222211111 1111   111


Q ss_pred             eecCCCeEEEEcCCCcEEEE-eCCCceEEEEee-cCceEEEecccccceEEEEEcCCC-CEEEEeeCCCcEEEeCCCCCC
Q 013274          353 LQTSKPIQLATTQDPAVVFV-PCMTAVKAFDIW-SGKTCLTFRGHYEYVNCCCFSSQD-QELYTGGNDRQILVWCPSRHI  429 (446)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~-~~~~~~~l~gH~~~v~~~~fSpd~-~~lvtgs~D~~v~vW~~~~~~  429 (446)
                      .+.+....+..+|-...++. +++-.+++|.-. ....+..+..+.+.|++++|||-. ..++++..||.|-+||+-...
T Consensus       396 ~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~  475 (555)
T KOG1587|consen  396 THIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDD  475 (555)
T ss_pred             ccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccc
Confidence            22233444556665555554 455689999987 667778888899999999999985 567889999999999998766


Q ss_pred             CCCcCCCcc
Q 013274          430 SDGVDAGPM  438 (446)
Q Consensus       430 ~~~~~~~~~  438 (446)
                      ..++..-++
T Consensus       476 ~~Pv~s~~~  484 (555)
T KOG1587|consen  476 EEPVLSQKV  484 (555)
T ss_pred             cCCcccccc
Confidence            665554433

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.44  E-value=5.2e-12  Score=126.99  Aligned_cols=194  Identities=16%  Similarity=0.245  Sum_probs=149.5

Q ss_pred             CCcEEEEEeCCCeEEEEECCCCeeeEEEecCCc--eEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCC
Q 013274          115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK--VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDG  192 (446)
Q Consensus       115 ~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~  192 (446)
                      +...++.+..+..+-+||...+..+...++...  .++.....+..+..++++|+.-+.|.+|+..-.+....+.||.+.
T Consensus        98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~  177 (967)
T KOG0974|consen   98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGS  177 (967)
T ss_pred             hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCc
Confidence            445778888888999999988777766665443  233444445556678999999999999999744444579999999


Q ss_pred             eEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccC
Q 013274          193 IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSAN  272 (446)
Q Consensus       193 v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (446)
                      +.++.++-++.+ ++|.|.|.++|+|++.+.+...                                             
T Consensus       178 iF~i~~s~dg~~-i~s~SdDRsiRlW~i~s~~~~~---------------------------------------------  211 (967)
T KOG0974|consen  178 IFSIVTSLDGRY-IASVSDDRSIRLWPIDSREVLG---------------------------------------------  211 (967)
T ss_pred             eEEEEEccCCcE-EEEEecCcceeeeecccccccC---------------------------------------------
Confidence            999999999886 7999999999999997643110                                             


Q ss_pred             CCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEE
Q 013274          273 GNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR  352 (446)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~  352 (446)
                                                    ...-+|...|..+.|+|+  +++|++.|-++++|+..-.           
T Consensus       212 ------------------------------~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~-----------  248 (967)
T KOG0974|consen  212 ------------------------------CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGT-----------  248 (967)
T ss_pred             ------------------------------cccccccceeEEEEeccc--eeEEeccceEEEEEecccc-----------
Confidence                                          001378899999999998  9999999999999954321           


Q ss_pred             eecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccc-cceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCCCC
Q 013274          353 LQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHY-EYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISD  431 (446)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~-~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~~~  431 (446)
                                                         .+.++.+|. +.++.++..++...++|++.|+.+++|+.....+.
T Consensus       249 -----------------------------------~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e  293 (967)
T KOG0974|consen  249 -----------------------------------QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLE  293 (967)
T ss_pred             -----------------------------------eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccccc
Confidence                                               112344554 46899999999999999999999999999866544


Q ss_pred             C
Q 013274          432 G  432 (446)
Q Consensus       432 ~  432 (446)
                      +
T Consensus       294 ~  294 (967)
T KOG0974|consen  294 G  294 (967)
T ss_pred             c
Confidence            3

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.44  E-value=3.6e-11  Score=102.19  Aligned_cols=229  Identities=15%  Similarity=0.146  Sum_probs=150.5

Q ss_pred             EEeecCCcEEEEEeCCCeEEEEECCCC----------eeeEEE-ecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCC
Q 013274          110 IWYPVDTGLFVTGSYDHYVKVWDTNCT----------RVVMNF-KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA  178 (446)
Q Consensus       110 ~~~~~~~~~l~s~s~D~~i~iWd~~~~----------~~~~~~-~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~  178 (446)
                      +++| .+++|+.|..+|+|-+..+++-          ..+..+ .+.++++.+++..     .+|++++ ||.|+-|--+
T Consensus        17 a~sp-~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d-----~~Lls~g-dG~V~gw~W~   89 (325)
T KOG0649|consen   17 AISP-SKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD-----DFLLSGG-DGLVYGWEWN   89 (325)
T ss_pred             hhCC-cceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh-----hheeecc-CceEEEeeeh
Confidence            4555 5779999999999999997531          122222 2467788888873     2455554 6999988653


Q ss_pred             CC------ceeeee--eCC-----CCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCccccc
Q 013274          179 SG------AISQTL--SGH-----RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKR  245 (446)
Q Consensus       179 ~~------~~~~~l--~~h-----~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (446)
                      ..      +.+..+  +-|     -..|.++-..|..+.+ +.++.|+.+.-||+.+++..+.                 
T Consensus        90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi-~~AgGD~~~y~~dlE~G~i~r~-----------------  151 (325)
T KOG0649|consen   90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSI-LFAGGDGVIYQVDLEDGRIQRE-----------------  151 (325)
T ss_pred             hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcE-EEecCCeEEEEEEecCCEEEEE-----------------
Confidence            21      111111  122     2367888888887654 5666899999999987653222                 


Q ss_pred             ceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEE
Q 013274          246 KVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLL  325 (446)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~  325 (446)
                                                                                 ..+|.+.|.+++-......++
T Consensus       152 -----------------------------------------------------------~rGHtDYvH~vv~R~~~~qil  172 (325)
T KOG0649|consen  152 -----------------------------------------------------------YRGHTDYVHSVVGRNANGQIL  172 (325)
T ss_pred             -----------------------------------------------------------EcCCcceeeeeeecccCccee
Confidence                                                                       357888999998855455678


Q ss_pred             EeecCCcEEEEecCcCceeeeeeeEEE-ee--c--CCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceE
Q 013274          326 SAGSDSRIRLWDVESGRNTLVNFETVR-LQ--T--SKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVN  400 (446)
Q Consensus       326 sgs~D~~i~lWd~~~~~~~~~~~~~~~-~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~  400 (446)
                      ||+.||++|+||.++++.... ++..+ ..  .  ...-..+..-+..-++.+.+....+|.+.+.+...+|+ -..+|.
T Consensus       173 sG~EDGtvRvWd~kt~k~v~~-ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLrsse~t~vfp-ipa~v~  250 (325)
T KOG0649|consen  173 SGAEDGTVRVWDTKTQKHVSM-IEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFP-IPARVH  250 (325)
T ss_pred             ecCCCccEEEEeccccceeEE-eccccChhhcCcccCceeEEEeccCceEEecCCCceeEEeccCCCceEEEe-ccccee
Confidence            999999999999999865322 11111 00  0  11112344445556666677789999998877766554 334556


Q ss_pred             EEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274          401 CCCFSSQDQELYTGGNDRQILVWCPS  426 (446)
Q Consensus       401 ~~~fSpd~~~lvtgs~D~~v~vW~~~  426 (446)
                      .+.|  +...+++++..+.|.-|.++
T Consensus       251 ~v~F--~~d~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  251 LVDF--VDDCVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             Eeee--ecceEEEeccccceeeeeec
Confidence            6777  45567888888888888776

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.43  E-value=1.3e-12  Score=120.19  Aligned_cols=285  Identities=17%  Similarity=0.286  Sum_probs=196.5

Q ss_pred             eEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCC
Q 013274           47 NSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDH  126 (446)
Q Consensus        47 ~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~  126 (446)
                      +.+.++ .+|++|+-|+.-|.+...|..+....-         .+.         -...|..+.|.. +.++|| .....
T Consensus       133 Y~~~yt-rnGrhlllgGrKGHlAa~Dw~t~~L~~---------Ei~---------v~Etv~Dv~~LH-neq~~A-VAQK~  191 (545)
T KOG1272|consen  133 YHLDYT-RNGRHLLLGGRKGHLAAFDWVTKKLHF---------EIN---------VMETVRDVTFLH-NEQFFA-VAQKK  191 (545)
T ss_pred             eeeeec-CCccEEEecCCccceeeeecccceeee---------eee---------hhhhhhhhhhhc-chHHHH-hhhhc
Confidence            567776 478999999999999999987654210         010         112344556654 344554 44567


Q ss_pred             eEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEE
Q 013274          127 YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWIL  206 (446)
Q Consensus       127 ~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l  206 (446)
                      -+.|||-. |..+.++.-...+.++.|.|.   +.+|++++..|.++.-|+.+|+.+..+..-.+.+..+.-+|-+. ++
T Consensus       192 y~yvYD~~-GtElHClk~~~~v~rLeFLPy---HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na-Vi  266 (545)
T KOG1272|consen  192 YVYVYDNN-GTELHCLKRHIRVARLEFLPY---HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA-VI  266 (545)
T ss_pred             eEEEecCC-CcEEeehhhcCchhhhcccch---hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccc-eE
Confidence            89999965 566666665566777777764   56899999999999999999999998888888899998888765 67


Q ss_pred             EEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeec
Q 013274          207 VTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPA  286 (446)
Q Consensus       207 ~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (446)
                      -.|...|+|-+|.......                                                             
T Consensus       267 h~GhsnGtVSlWSP~skeP-------------------------------------------------------------  285 (545)
T KOG1272|consen  267 HLGHSNGTVSLWSPNSKEP-------------------------------------------------------------  285 (545)
T ss_pred             EEcCCCceEEecCCCCcch-------------------------------------------------------------
Confidence            7899999999997543210                                                             


Q ss_pred             CCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCC
Q 013274          287 KGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQD  366 (446)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (446)
                                     ......|.++|++|++.++|.|++|.|.|..++|||+..-.. +..+..    .-....++++ +
T Consensus       286 ---------------LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q-l~t~~t----p~~a~~ls~S-q  344 (545)
T KOG1272|consen  286 ---------------LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ-LHTYRT----PHPASNLSLS-Q  344 (545)
T ss_pred             ---------------HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccc-cceeec----CCCccccccc-c
Confidence                           012346889999999999999999999999999999986432 111111    1122233333 4


Q ss_pred             CcEEEEeCCCceEEEEe-ecC--ceEEEeccc--ccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC--CCCCcCCCccC
Q 013274          367 PAVVFVPCMTAVKAFDI-WSG--KTCLTFRGH--YEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH--ISDGVDAGPMQ  439 (446)
Q Consensus       367 ~~~~~~~~~~~~~~~d~-~~~--~~~~~l~gH--~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~--~~~~~~~~~~~  439 (446)
                      ..+++++.++.+.+|.- -.+  ....-+..|  .+.|.++.|=|-...|--|-..|.-.+--|..+  --|.+..+|+.
T Consensus       345 kglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsGePN~Ds~e~nPfe  424 (545)
T KOG1272|consen  345 KGLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSGEPNYDSLEDNPFE  424 (545)
T ss_pred             ccceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCCCCCCcchhccCcch
Confidence            55677777788999953 221  111222333  248899999998777777666666666666543  45666666654

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.38  E-value=1.7e-10  Score=103.73  Aligned_cols=196  Identities=15%  Similarity=0.203  Sum_probs=135.4

Q ss_pred             ceeEEEeecCCCCEEEEeeCCC--cEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEE
Q 013274           45 SINSLQVDLTEERYLLSGASDS--SVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG  122 (446)
Q Consensus        45 ~v~~l~~s~~~~~~l~s~s~Dg--~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~  122 (446)
                      .|-.+-|+.   .++|-.+.+.  ..++.+.++....   +.+               --..+|.++..   +.++|+.+
T Consensus        48 ~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I---Ce~---------------~fpt~IL~Vrm---Nr~RLvV~  103 (391)
T KOG2110|consen   48 SIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI---CEI---------------FFPTSILAVRM---NRKRLVVC  103 (391)
T ss_pred             EEEEeeccc---ceeEEEecCCCceEEEEEcccCceE---EEE---------------ecCCceEEEEE---ccceEEEE
Confidence            455566763   3555555544  4888887754321   010               01123444443   56778877


Q ss_pred             eCCCeEEEEECCCCeeeEEEecC-CceE-EeeeccCCCCceEEEEe--eCCCcEEEEeCCCCceeeeeeCCCCCeEEEEE
Q 013274          123 SYDHYVKVWDTNCTRVVMNFKMP-GKVY-RTAMSPLAASHMLIAAG--TEDVQVRLCDIASGAISQTLSGHRDGIMTVEW  198 (446)
Q Consensus       123 s~D~~i~iWd~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~lasg--s~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~  198 (446)
                      =.+. |.|+|+++.+++.++... .+.. -.++++... ..++|.-  ...|.|.+||+.+-.....+..|.+++-+++|
T Consensus       104 Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~-n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalaf  181 (391)
T KOG2110|consen  104 LEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNA-NCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAF  181 (391)
T ss_pred             Eccc-EEEEecccceeehhhhccCCCccceEeeccCCC-CceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEE
Confidence            7664 999999999998877643 2222 234444322 2355543  34689999999999999999999999999999


Q ss_pred             ecCCCeEEEEeeCCCc-EEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCcee
Q 013274          199 STSSEWILVTGGCDGA-IRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVR  277 (446)
Q Consensus       199 s~~~~~~l~S~s~Dg~-I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (446)
                      +++|. +|||+|+-|+ ||++.+..+..+..|..                                              
T Consensus       182 s~~G~-llATASeKGTVIRVf~v~~G~kl~eFRR----------------------------------------------  214 (391)
T KOG2110|consen  182 SPDGT-LLATASEKGTVIRVFSVPEGQKLYEFRR----------------------------------------------  214 (391)
T ss_pred             CCCCC-EEEEeccCceEEEEEEcCCccEeeeeeC----------------------------------------------
Confidence            99998 5899999997 89999887765443321                                              


Q ss_pred             ecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcC
Q 013274          278 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG  341 (446)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~  341 (446)
                                         |.         -...|.+|+|+||+++|+..|..++|+++-++..
T Consensus       215 -------------------G~---------~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  215 -------------------GT---------YPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             -------------------Cc---------eeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence                               00         0124899999999999999999999999988753

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.38  E-value=2.4e-11  Score=114.01  Aligned_cols=147  Identities=18%  Similarity=0.311  Sum_probs=96.5

Q ss_pred             ccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEe-CCCC
Q 013274          102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCD-IASG  180 (446)
Q Consensus       102 h~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd-~~~~  180 (446)
                      -+..|+|+.|.|.+..+|+.+-.++.+.++|.+-....     ...    .+.... ....++..       .|- ..+.
T Consensus       218 ~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~-----t~p----~~~~~k-~~~~f~i~-------t~ksk~~r  280 (636)
T KOG2394|consen  218 NKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGA-----TAP----SYQALK-DGDQFAIL-------TSKSKKTR  280 (636)
T ss_pred             cccceEEEEEEeCCCceEEEEEecCceEEeeccccccC-----CCC----cccccC-CCCeeEEe-------eeeccccC
Confidence            34689999999988889999999999999987311000     000    011110 01112211       111 1111


Q ss_pred             ceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCC
Q 013274          181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSS  260 (446)
Q Consensus       181 ~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (446)
                      .++....--.+.|...+|+||+++ ||+.|.||.+||+|..+.+.+..+                               
T Consensus       281 NPv~~w~~~~g~in~f~FS~DG~~-LA~VSqDGfLRvF~fdt~eLlg~m-------------------------------  328 (636)
T KOG2394|consen  281 NPVARWHIGEGSINEFAFSPDGKY-LATVSQDGFLRIFDFDTQELLGVM-------------------------------  328 (636)
T ss_pred             CccceeEeccccccceeEcCCCce-EEEEecCceEEEeeccHHHHHHHH-------------------------------
Confidence            233333223458899999999986 799999999999998754321110                               


Q ss_pred             cCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCc
Q 013274          261 VKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES  340 (446)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~  340 (446)
                                                                   +.-++...||+|||||+||++|+.|--|.||.+..
T Consensus       329 ---------------------------------------------kSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e  363 (636)
T KOG2394|consen  329 ---------------------------------------------KSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE  363 (636)
T ss_pred             ---------------------------------------------HhhccceEEEEEcCCccEEEecCCcceEEEEEecc
Confidence                                                         11245689999999999999999999999999987


Q ss_pred             Cc
Q 013274          341 GR  342 (446)
Q Consensus       341 ~~  342 (446)
                      ++
T Consensus       364 rR  365 (636)
T KOG2394|consen  364 RR  365 (636)
T ss_pred             ce
Confidence            65

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.37  E-value=7.4e-10  Score=97.87  Aligned_cols=179  Identities=14%  Similarity=0.250  Sum_probs=121.3

Q ss_pred             CeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCC-CceeeeeeCC--CCCeEEEEEecCC
Q 013274          126 HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS-GAISQTLSGH--RDGIMTVEWSTSS  202 (446)
Q Consensus       126 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~-~~~~~~l~~h--~~~v~sv~~s~~~  202 (446)
                      .++.|||-....++..+...+.+..+.+.+.     .|+.. ..+.|+||...+ .+.++.+...  ...+.++.-.-+ 
T Consensus        75 NkviIWDD~k~~~i~el~f~~~I~~V~l~r~-----riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~-  147 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELSFNSEIKAVKLRRD-----RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSN-  147 (346)
T ss_pred             ceEEEEecccCcEEEEEEeccceeeEEEcCC-----eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCC-
Confidence            6899999777788888888888888877653     33433 357899999874 4555555432  233444432222 


Q ss_pred             CeEEEE-eeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeeccc
Q 013274          203 EWILVT-GGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV  281 (446)
Q Consensus       203 ~~~l~S-~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (446)
                      +.+||- |-.-|.|+|-|+...+.                                                        
T Consensus       148 k~~LafPg~k~GqvQi~dL~~~~~--------------------------------------------------------  171 (346)
T KOG2111|consen  148 KSLLAFPGFKTGQVQIVDLASTKP--------------------------------------------------------  171 (346)
T ss_pred             ceEEEcCCCccceEEEEEhhhcCc--------------------------------------------------------
Confidence            223333 23347777777653210                                                        


Q ss_pred             ceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCc-EEEEecCcCceeeeeeeEEEeecCCCeE
Q 013274          282 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSR-IRLWDVESGRNTLVNFETVRLQTSKPIQ  360 (446)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~-i~lWd~~~~~~~~~~~~~~~~~~~~~~~  360 (446)
                                        .......+|.+.|.||+.+.+|..+||+|..|+ |||||..++.. +.+   ++.  +    
T Consensus       172 ------------------~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~-l~E---~RR--G----  223 (346)
T KOG2111|consen  172 ------------------NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTL-LQE---LRR--G----  223 (346)
T ss_pred             ------------------CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcE-eee---eec--C----
Confidence                              000123589999999999999999999999999 59999887742 111   111  0    


Q ss_pred             EEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC
Q 013274          361 LATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH  428 (446)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~  428 (446)
                                                       .....|.|++||||.++|+..|.-|||.|+.+...
T Consensus       224 ---------------------------------~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  224 ---------------------------------VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             ---------------------------------CchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence                                             12346899999999999999999999999977643

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=4.6e-10  Score=110.39  Aligned_cols=217  Identities=16%  Similarity=0.175  Sum_probs=134.7

Q ss_pred             ccccEeEEEEeecCCcEEEEEeC---CCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCC--cEEEEe
Q 013274          102 HKYAISSAIWYPVDTGLFVTGSY---DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV--QVRLCD  176 (446)
Q Consensus       102 h~~~V~~~~~~~~~~~~l~s~s~---D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~--~v~vwd  176 (446)
                      +...+.+..|+| |++.|+..+.   +..|.+||+.+++........+......++|++.  .++.+.+.++  .|++||
T Consensus       197 ~~~~~~~p~wSP-DG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~--~La~~~~~~g~~~I~~~d  273 (429)
T PRK03629        197 SPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS--KLAFALSKTGSLNLYVMD  273 (429)
T ss_pred             CCCceeeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCC--EEEEEEcCCCCcEEEEEE
Confidence            344566778887 7877775543   4579999998876543333444444567777542  3333434444  599999


Q ss_pred             CCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEc--cCCceeEEeecccccccCCCcccccceeeccccc
Q 013274          177 IASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDI--RRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLS  254 (446)
Q Consensus       177 ~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (446)
                      ++++... .+..+...+....|+|+++.++.+...++...||.+  .++... .+                         
T Consensus       274 ~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~l-------------------------  326 (429)
T PRK03629        274 LASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RI-------------------------  326 (429)
T ss_pred             CCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Ee-------------------------
Confidence            9988654 344445567889999999975445444566666643  222100 00                         


Q ss_pred             cCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecC---C
Q 013274          255 AGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD---S  331 (446)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D---~  331 (446)
                                                                         ..+........|+|||++|+..+.+   .
T Consensus       327 ---------------------------------------------------t~~~~~~~~~~~SpDG~~Ia~~~~~~g~~  355 (429)
T PRK03629        327 ---------------------------------------------------TWEGSQNQDADVSSDGKFMVMVSSNGGQQ  355 (429)
T ss_pred             ---------------------------------------------------ecCCCCccCEEECCCCCEEEEEEccCCCc
Confidence                                                               0001123456799999998776543   3


Q ss_pred             cEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCC-c---eEEEEeecCceEEEecccccceEEEEEcC
Q 013274          332 RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMT-A---VKAFDIWSGKTCLTFRGHYEYVNCCCFSS  406 (446)
Q Consensus       332 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~d~~~~~~~~~l~gH~~~v~~~~fSp  406 (446)
                      .|.+||+.++.....  ..    ........++||+..++..+.. .   +.++++ +++....+.+|.+.+...+|||
T Consensus       356 ~I~~~dl~~g~~~~L--t~----~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        356 HIAKQDLATGGVQVL--TD----TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             eEEEEECCCCCeEEe--CC----CCCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence            588899987753221  11    1112345688999877665432 2   344444 5777788899999999999997

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=1.2e-09  Score=107.35  Aligned_cols=218  Identities=11%  Similarity=0.093  Sum_probs=131.4

Q ss_pred             CeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEee---CCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCC
Q 013274          126 HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGT---EDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSS  202 (446)
Q Consensus       126 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs---~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~  202 (446)
                      ..|.+||.+...........+.+....++|++.   .|+..+   .+..|++||+.+++.. .+....+.+.++.|+|++
T Consensus       179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~---~la~~s~~~g~~~i~i~dl~~G~~~-~l~~~~~~~~~~~~SPDG  254 (429)
T PRK03629        179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGS---KLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDG  254 (429)
T ss_pred             eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCC---EEEEEEecCCCcEEEEEECCCCCeE-EccCCCCCcCCeEECCCC
Confidence            379999987554333223334566778888643   444332   3457999999888542 222223334568999999


Q ss_pred             CeEEEEeeCCC--cEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecc
Q 013274          203 EWILVTGGCDG--AIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSS  280 (446)
Q Consensus       203 ~~~l~S~s~Dg--~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (446)
                      +.++++.+.+|  .|.+||+.++...+..                                                   
T Consensus       255 ~~La~~~~~~g~~~I~~~d~~tg~~~~lt---------------------------------------------------  283 (429)
T PRK03629        255 SKLAFALSKTGSLNLYVMDLASGQIRQVT---------------------------------------------------  283 (429)
T ss_pred             CEEEEEEcCCCCcEEEEEECCCCCEEEcc---------------------------------------------------
Confidence            97665655555  4888887654321100                                                   


Q ss_pred             cceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecC-CcEEEE--ecCcCceeeeeeeEEEeecCC
Q 013274          281 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD-SRIRLW--DVESGRNTLVNFETVRLQTSK  357 (446)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D-~~i~lW--d~~~~~~~~~~~~~~~~~~~~  357 (446)
                                                .+...+....|+|||+.|+..+.+ +..+||  |+.++.....     ......
T Consensus       284 --------------------------~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~l-----t~~~~~  332 (429)
T PRK03629        284 --------------------------DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRI-----TWEGSQ  332 (429)
T ss_pred             --------------------------CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEe-----ecCCCC
Confidence                                      011224567899999988766654 445555  6665532211     111223


Q ss_pred             CeEEEEcCCCcEEEEeCC----CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCc---EEEeCCCCCCC
Q 013274          358 PIQLATTQDPAVVFVPCM----TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQ---ILVWCPSRHIS  430 (446)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~----~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~---v~vW~~~~~~~  430 (446)
                      .....++|++..++....    ..+.+||+.+++.. .+... .......|||||++|+..+.|+.   +.+|++++...
T Consensus       333 ~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~  410 (429)
T PRK03629        333 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFK  410 (429)
T ss_pred             ccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCe
Confidence            345678898877655432    24677888777643 33321 23356789999999999888765   67778775543


Q ss_pred             C
Q 013274          431 D  431 (446)
Q Consensus       431 ~  431 (446)
                      -
T Consensus       411 ~  411 (429)
T PRK03629        411 A  411 (429)
T ss_pred             E
Confidence            3

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.34  E-value=1.5e-10  Score=104.66  Aligned_cols=255  Identities=13%  Similarity=0.142  Sum_probs=164.8

Q ss_pred             ccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCC------CeeeEEEec--CCceEEeeeccCCCCceEEEEeeCCC
Q 013274           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNC------TRVVMNFKM--PGKVYRTAMSPLAASHMLIAAGTEDV  170 (446)
Q Consensus        99 ~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~------~~~~~~~~~--~~~~~~~~~~~~~~~~~~lasgs~d~  170 (446)
                      ..+|.+.|.++.|+. +++.|++|++|..+++|+++.      .+++.....  ...+++++|..   ....+.+|..++
T Consensus        52 ~~~H~GCiNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~---~N~~~~SG~~~~  127 (609)
T KOG4227|consen   52 VREHTGCINALQFSH-NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL---ENRFLYSGERWG  127 (609)
T ss_pred             hhhhccccceeeecc-CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc---CCeeEecCCCcc
Confidence            358999999988876 689999999999999999753      333333322  24466666653   445788999999


Q ss_pred             cEEEEeCCCCceeeeee--CCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCccccccee
Q 013274          171 QVRLCDIASGAISQTLS--GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVS  248 (446)
Q Consensus       171 ~v~vwd~~~~~~~~~l~--~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (446)
                      +|.+-|+++...+..+.  ...+.|..+..+|-.+ +|++.+.++.|.+||+|....         .+ .  +       
T Consensus       128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~D~Rd~~~---------~~-~--~-------  187 (609)
T KOG4227|consen  128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDN-TLIVVTRAKLVSFIDNRDRQN---------PI-S--L-------  187 (609)
T ss_pred             eeEeeecccceeeeeecccCcccceeecccCCCCc-eEEEEecCceEEEEeccCCCC---------CC-c--e-------
Confidence            99999999987766553  2345899999999865 689999999999999985210         00 0  0       


Q ss_pred             eccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCC-CEEEEe
Q 013274          249 ISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSA  327 (446)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~sg  327 (446)
                                                        ..++.                    -......+-|+|.. .+|++.
T Consensus       188 ----------------------------------~~~AN--------------------~~~~F~t~~F~P~~P~Li~~~  213 (609)
T KOG4227|consen  188 ----------------------------------VLPAN--------------------SGKNFYTAEFHPETPALILVN  213 (609)
T ss_pred             ----------------------------------eeecC--------------------CCccceeeeecCCCceeEEec
Confidence                                              00000                    01124556788865 577888


Q ss_pred             ecCCcEEEEecCcCceeeeeeeE-EEeec--CCCeEEEEcCCCcEEEEeCCC-ceEEEEeecCceEEEecccc-------
Q 013274          328 GSDSRIRLWDVESGRNTLVNFET-VRLQT--SKPIQLATTQDPAVVFVPCMT-AVKAFDIWSGKTCLTFRGHY-------  396 (446)
Q Consensus       328 s~D~~i~lWd~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~l~gH~-------  396 (446)
                      +.-+-+.+||+......+..+.. +.++.  ...+.+.+++.+..+++--.. .-..+|+-+..+..--..|.       
T Consensus       214 ~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~  293 (609)
T KOG4227|consen  214 SETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNI  293 (609)
T ss_pred             cccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceee
Confidence            88899999999865432221111 11111  122456677777766543222 22456665544332222232       


Q ss_pred             cceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC-CCCC
Q 013274          397 EYVNCCCFSSQDQELYTGGNDRQILVWCPSRH-ISDG  432 (446)
Q Consensus       397 ~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~-~~~~  432 (446)
                      ..+-+|+|--| ..++|||.|-.|.+|.++.. .+.|
T Consensus       294 ~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G  329 (609)
T KOG4227|consen  294 KTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYG  329 (609)
T ss_pred             eeeeeeeeecc-eeeeccCcccceEEEecCCCccccC
Confidence            24567888644 55999999999999977633 3444

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.33  E-value=5.6e-11  Score=111.46  Aligned_cols=142  Identities=20%  Similarity=0.342  Sum_probs=104.8

Q ss_pred             CEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCC
Q 013274           57 RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT  136 (446)
Q Consensus        57 ~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~  136 (446)
                      ..++-+++||.+.|-+-. +..                 ......|.+++.+..|+| +|.-|+|+|.||-|++|.-...
T Consensus        76 d~~~i~s~DGkf~il~k~-~rV-----------------E~sv~AH~~A~~~gRW~~-dGtgLlt~GEDG~iKiWSrsGM  136 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNKS-ARV-----------------ERSISAHAAAISSGRWSP-DGAGLLTAGEDGVIKIWSRSGM  136 (737)
T ss_pred             ceEEEEcCCceEEEeccc-chh-----------------hhhhhhhhhhhhhcccCC-CCceeeeecCCceEEEEeccch
Confidence            467788899998887632 110                 112358999999999998 7889999999999999985432


Q ss_pred             eeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEE
Q 013274          137 RVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIR  216 (446)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~  216 (446)
                      -.-...+....++++++.|.+.  .++.+.  .+.+.|=-+..+..+-..+.|.+-|.++.|++.+. +++||++|-..+
T Consensus       137 LRStl~Q~~~~v~c~~W~p~S~--~vl~c~--g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~-lI~sgGED~kfK  211 (737)
T KOG1524|consen  137 LRSTVVQNEESIRCARWAPNSN--SIVFCQ--GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSN-IIASGGEDFRFK  211 (737)
T ss_pred             HHHHHhhcCceeEEEEECCCCC--ceEEec--CCeEEEeecccccceeEEeccCcEEEEeecCcccc-ceeecCCceeEE
Confidence            2111122345688999998754  233332  35677777777766777889999999999999876 689999999999


Q ss_pred             EEEccC
Q 013274          217 FWDIRR  222 (446)
Q Consensus       217 iWd~~~  222 (446)
                      +||-..
T Consensus       212 vWD~~G  217 (737)
T KOG1524|consen  212 IWDAQG  217 (737)
T ss_pred             eecccC
Confidence            999653

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.32  E-value=3.6e-10  Score=102.38  Aligned_cols=195  Identities=15%  Similarity=0.229  Sum_probs=143.9

Q ss_pred             EEEEeeCCCcEEEEeCCCCc----eeeeeeCCCCCeEEEEEecCCCeEEEEeeCC--CcEEEEEccCCceeEEeeccccc
Q 013274          162 LIAAGTEDVQVRLCDIASGA----ISQTLSGHRDGIMTVEWSTSSEWILVTGGCD--GAIRFWDIRRAGCFRVLDQSQSQ  235 (446)
Q Consensus       162 ~lasgs~d~~v~vwd~~~~~----~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~D--g~I~iWd~~~~~~~~~~~~~~~~  235 (446)
                      .|.++-.+|.+.+|..+.+.    .+..+..+ ..+..|.-+|..++++++|+..  ..++|||+.+.  .+++.+.+-+
T Consensus       117 ~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~--~qiw~aKNvp  193 (412)
T KOG3881|consen  117 TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS--KQIWSAKNVP  193 (412)
T ss_pred             EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccc--eeeeeccCCC
Confidence            46677789999999998542    23333333 5567777778888888889998  89999999764  2233211100


Q ss_pred             ccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEE
Q 013274          236 LGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGL  315 (446)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l  315 (446)
                      .                                                   ..+...              -.-+++.+
T Consensus       194 n---------------------------------------------------D~L~Lr--------------VPvW~tdi  208 (412)
T KOG3881|consen  194 N---------------------------------------------------DRLGLR--------------VPVWITDI  208 (412)
T ss_pred             C---------------------------------------------------ccccce--------------eeeeeccc
Confidence            0                                                   000000              01236777


Q ss_pred             EEccC--CCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEE-
Q 013274          316 KVTED--GMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLT-  391 (446)
Q Consensus       316 ~fs~d--g~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~-  391 (446)
                      .|-+.  ...+++++.-+.+|+||...++.++..+   .+.......+...|++..++++.. ..+..||+..+++... 
T Consensus       209 ~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~f---d~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~  285 (412)
T KOG3881|consen  209 RFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQF---DFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCG  285 (412)
T ss_pred             eecCCCCCceEEEEecceeEEEecCcccCcceeEe---ccccCcceeeeecCCCcEEEEecccchhheecccCceeeccc
Confidence            88877  7889999999999999999876554433   334556667888899988887744 5789999999998776 


Q ss_pred             ecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCC
Q 013274          392 FRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR  427 (446)
Q Consensus       392 l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~  427 (446)
                      |.|-++.|.++..+|..++|++||-|+-|||+|..+
T Consensus       286 ~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  286 LKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT  321 (412)
T ss_pred             cCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence            899999999999999999999999999999999986

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.32  E-value=1.7e-10  Score=104.40  Aligned_cols=206  Identities=17%  Similarity=0.206  Sum_probs=143.4

Q ss_pred             ccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEE
Q 013274           43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG  122 (446)
Q Consensus        43 ~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~  122 (446)
                      +++|-.+...  ++ .|++|-.+|.+.+|..+.+....       . +...  ..   -+ ..+..+.-.+....++|+|
T Consensus       105 ~~~I~gl~~~--dg-~Litc~~sG~l~~~~~k~~d~hs-------s-~l~~--la---~g-~g~~~~r~~~~~p~Iva~G  167 (412)
T KOG3881|consen  105 TKSIKGLKLA--DG-TLITCVSSGNLQVRHDKSGDLHS-------S-KLIK--LA---TG-PGLYDVRQTDTDPYIVATG  167 (412)
T ss_pred             cccccchhhc--CC-EEEEEecCCcEEEEeccCCcccc-------c-ccee--ee---cC-CceeeeccCCCCCceEecC
Confidence            3455555553  33 68899999999999987543210       0 0000  00   01 2233344445556688999


Q ss_pred             eCC--CeEEEEECCCCeeeEEEec----------CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc-eeeeeeCC
Q 013274          123 SYD--HYVKVWDTNCTRVVMNFKM----------PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA-ISQTLSGH  189 (446)
Q Consensus       123 s~D--~~i~iWd~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~-~~~~l~~h  189 (446)
                      |..  ..+++||++..+.+..-..          +-....+.|.+..+ +..||+++.-+.+++||.+.+. ++..+.--
T Consensus       168 Gke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~-~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~  246 (412)
T KOG3881|consen  168 GKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSP-NYKFATITRYHQVRLYDTRHQRRPVAQFDFL  246 (412)
T ss_pred             chhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCC-CceEEEEecceeEEEecCcccCcceeEeccc
Confidence            999  9999999988765543321          11123344444322 5679999999999999999875 55667666


Q ss_pred             CCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCcccc
Q 013274          190 RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKR  269 (446)
Q Consensus       190 ~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (446)
                      ..+++++...|+++. +++|..-+.+..+|+|+++.....                                        
T Consensus       247 E~~is~~~l~p~gn~-Iy~gn~~g~l~~FD~r~~kl~g~~----------------------------------------  285 (412)
T KOG3881|consen  247 ENPISSTGLTPSGNF-IYTGNTKGQLAKFDLRGGKLLGCG----------------------------------------  285 (412)
T ss_pred             cCcceeeeecCCCcE-EEEecccchhheecccCceeeccc----------------------------------------
Confidence            889999999999875 688988999999999976532110                                        


Q ss_pred             ccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCc
Q 013274          270 SANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR  342 (446)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~  342 (446)
                                                         +.+-.|.|++|..+|.+.+|+++|-|+.|||+|+.+.+
T Consensus       286 -----------------------------------~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrk  323 (412)
T KOG3881|consen  286 -----------------------------------LKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK  323 (412)
T ss_pred             -----------------------------------cCCccCCcceEEEcCCCceEEeeccceeEEEeecccch
Confidence                                               12335679999999999999999999999999999843

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.32  E-value=1e-11  Score=106.71  Aligned_cols=166  Identities=19%  Similarity=0.306  Sum_probs=119.6

Q ss_pred             CccceeEEEeecCCCC--EEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEE
Q 013274           42 HKGSINSLQVDLTEER--YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF  119 (446)
Q Consensus        42 H~~~v~~l~~s~~~~~--~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l  119 (446)
                      -.|+|.|..+...++.  +|+.|.++|.|.+||+.++...      ...+.+..+. .....|+..|.++.+.+ .-..=
T Consensus       149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~------~~~~~~~kv~-~~~ash~qpvlsldyas-~~~rG  220 (323)
T KOG0322|consen  149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKI------IQLPQSSKVE-SPNASHKQPVLSLDYAS-SCDRG  220 (323)
T ss_pred             ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCcee------eccccccccc-cchhhccCcceeeeech-hhcCC
Confidence            4578888876444443  6788899999999999876431      1111211111 12246888999887754 22344


Q ss_pred             EEEeCCCeEEEEECCCC--ee----eEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCe
Q 013274          120 VTGSYDHYVKVWDTNCT--RV----VMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI  193 (446)
Q Consensus       120 ~s~s~D~~i~iWd~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v  193 (446)
                      ++|+.+..+..|+++..  .+    ..+++.+| +..+.+-+   ++.++|+++.|+.||||+-++..++..|+-|.+.|
T Consensus       221 isgga~dkl~~~Sl~~s~gslq~~~e~~lknpG-v~gvrIRp---D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagv  296 (323)
T KOG0322|consen  221 ISGGADDKLVMYSLNHSTGSLQIRKEITLKNPG-VSGVRIRP---DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGV  296 (323)
T ss_pred             cCCCccccceeeeeccccCcccccceEEecCCC-ccceEEcc---CCcEEeecccCCcEEEEEeccCCchhhhhhhhcce
Confidence            78899999999998643  21    12222333 22333433   56799999999999999999999999999999999


Q ss_pred             EEEEEecCCCeEEEEeeCCCcEEEEEc
Q 013274          194 MTVEWSTSSEWILVTGGCDGAIRFWDI  220 (446)
Q Consensus       194 ~sv~~s~~~~~~l~S~s~Dg~I~iWd~  220 (446)
                      ++|+|+|+.+ +|+++|.|++|-+|++
T Consensus       297 n~vAfspd~~-lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  297 NAVAFSPDCE-LMAAASKDARISLWKL  322 (323)
T ss_pred             eEEEeCCCCc-hhhhccCCceEEeeec
Confidence            9999999976 6899999999999986

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=1.8e-09  Score=106.71  Aligned_cols=232  Identities=11%  Similarity=0.073  Sum_probs=138.0

Q ss_pred             CeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEee---CCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCC
Q 013274          126 HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGT---EDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSS  202 (446)
Q Consensus       126 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs---~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~  202 (446)
                      ..|.+||.+...........+.+....++|++   ..|+..+   .+..|++||+.++.. ..+..+.+.+.+.+|+|++
T Consensus       182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG---~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG  257 (435)
T PRK05137        182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNR---QEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDG  257 (435)
T ss_pred             eEEEEECCCCCCcEEEecCCCCeEeeEECCCC---CEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCC
Confidence            47888888655433322334457777888864   3455443   246899999998865 3455667778889999999


Q ss_pred             CeEEEEeeCCCc--EEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecc
Q 013274          203 EWILVTGGCDGA--IRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSS  280 (446)
Q Consensus       203 ~~~l~S~s~Dg~--I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (446)
                      +.++++.+.++.  |.+||+.++...+ +                                                   
T Consensus       258 ~~la~~~~~~g~~~Iy~~d~~~~~~~~-L---------------------------------------------------  285 (435)
T PRK05137        258 RKVVMSLSQGGNTDIYTMDLRSGTTTR-L---------------------------------------------------  285 (435)
T ss_pred             CEEEEEEecCCCceEEEEECCCCceEE-c---------------------------------------------------
Confidence            987677777766  5555765432110 0                                                   


Q ss_pred             cceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeec-CC--cEEEEecCcCceeeeeeeEEEeecCC
Q 013274          281 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS-DS--RIRLWDVESGRNTLVNFETVRLQTSK  357 (446)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~-D~--~i~lWd~~~~~~~~~~~~~~~~~~~~  357 (446)
                                               ..+.+......|+|||++|+..+. ++  .|.+||+.++......     .....
T Consensus       286 -------------------------t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt-----~~~~~  335 (435)
T PRK05137        286 -------------------------TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRIS-----FGGGR  335 (435)
T ss_pred             -------------------------cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEee-----cCCCc
Confidence                                     011122345689999998876653 33  5788888765432211     11222


Q ss_pred             CeEEEEcCCCcEEEEeCC----CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCC------CcEEEeCCCC
Q 013274          358 PIQLATTQDPAVVFVPCM----TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND------RQILVWCPSR  427 (446)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~----~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D------~~v~vW~~~~  427 (446)
                      .....++|++..++....    ..+.+|++..+.. +.+. +...+...+|||||++|+-.+.+      ..+.+.++++
T Consensus       336 ~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g  413 (435)
T PRK05137        336 YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG  413 (435)
T ss_pred             ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence            334668888887765432    2466677644432 3332 23356789999999998754442      2456667765


Q ss_pred             CCCCCcCCCccCccCCCC
Q 013274          428 HISDGVDAGPMQDQDNWS  445 (446)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~  445 (446)
                      .....+..........|+
T Consensus       414 ~~~~~l~~~~~~~~p~Ws  431 (435)
T PRK05137        414 RNEREVPTPGDASDPAWS  431 (435)
T ss_pred             CceEEccCCCCccCcccC
Confidence            544333222223444554

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.31  E-value=8.4e-10  Score=97.57  Aligned_cols=222  Identities=18%  Similarity=0.274  Sum_probs=152.5

Q ss_pred             ccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEE
Q 013274           43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG  122 (446)
Q Consensus        43 ~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~  122 (446)
                      .++|+|.+|++ +...+|.+-....|.||........+.              .+++..|...|+.+.|.| ....++||
T Consensus        10 ~~pitchAwn~-drt~iAv~~~~~evhiy~~~~~~~w~~--------------~htls~Hd~~vtgvdWap-~snrIvtc   73 (361)
T KOG1523|consen   10 LEPITCHAWNS-DRTQIAVSPNNHEVHIYSMLGADLWEP--------------AHTLSEHDKIVTGVDWAP-KSNRIVTC   73 (361)
T ss_pred             cCceeeeeecC-CCceEEeccCCceEEEEEecCCCCcee--------------ceehhhhCcceeEEeecC-CCCceeEc
Confidence            37899999986 577888888888999998654432221              123457888999999998 56699999


Q ss_pred             eCCCeEEEEEC-CCCeee---EEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCcee---e-eeeCCCCCeE
Q 013274          123 SYDHYVKVWDT-NCTRVV---MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAIS---Q-TLSGHRDGIM  194 (446)
Q Consensus       123 s~D~~i~iWd~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~---~-~l~~h~~~v~  194 (446)
                      +.|....+|.. +.++-.   ..+.+.....++.++|..   +.||+|+.-..|-||=.+..+--   + .-+.+...|.
T Consensus        74 s~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~e---nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~  150 (361)
T KOG1523|consen   74 SHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKE---NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVT  150 (361)
T ss_pred             cCCCCccccccCCCCeeccceeEEEeccceeeEeecCcC---ceEEeccCccEEEEEEEecccceehhhhhCCcccccee
Confidence            99999999998 544432   223455667778888754   57999999999999988765422   1 2235778999


Q ss_pred             EEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCC
Q 013274          195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGN  274 (446)
Q Consensus       195 sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (446)
                      ++.|.|++= +|++||.|+..|++..-    ++-.+....                        ....   . .+.    
T Consensus       151 sldWhpnnV-LlaaGs~D~k~rVfSay----IK~Vdekpa------------------------p~pW---g-sk~----  193 (361)
T KOG1523|consen  151 SLDWHPNNV-LLAAGSTDGKCRVFSAY----IKGVDEKPA------------------------PTPW---G-SKM----  193 (361)
T ss_pred             eeeccCCcc-eecccccCcceeEEEEe----eeccccCCC------------------------CCCC---c-cCC----
Confidence            999999864 68899999999999742    111110000                        0000   0 000    


Q ss_pred             ceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCc
Q 013274          275 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR  342 (446)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~  342 (446)
                           +.+.               +..+  ...-.+.|..+.|+|.|..|+=.+-|.++.+=|.....
T Consensus       194 -----PFG~---------------lm~E--~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  194 -----PFGQ---------------LMSE--ASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             -----cHHH---------------HHHh--hccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence                 0000               0000  00224679999999999999999999999999987654

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.31  E-value=7.5e-11  Score=104.42  Aligned_cols=304  Identities=13%  Similarity=0.140  Sum_probs=178.5

Q ss_pred             eecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCC
Q 013274          112 YPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD  191 (446)
Q Consensus       112 ~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~  191 (446)
                      ++++|+++|++++- .+.|=|.++-+...-|.+-.++.-+.+..+  +..++.....|+.|.+|++...+.-..+..-++
T Consensus        16 fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ad--s~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~a   92 (447)
T KOG4497|consen   16 FSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKAD--SCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQA   92 (447)
T ss_pred             ECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeecc--ceeeeeeeeccceEEEEEeecceeEEEeccCCC
Confidence            33489999999976 777888877665544444334434444433  234667778899999999999988878887888


Q ss_pred             CeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeeccccc-------ccCCCcccccceeecc-ccccCCCCCcCC
Q 013274          192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQ-------LGRRPPLLKRKVSISK-SLSAGQNSSVKP  263 (446)
Q Consensus       192 ~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  263 (446)
                      ++.++.|||+++.+|.+...|-.|.+|.+.+.++..........       -|+...+..+...... .+...... .-.
T Consensus        93 gls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W-~ll  171 (447)
T KOG4497|consen   93 GLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAW-ILL  171 (447)
T ss_pred             cceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHH-HHH
Confidence            99999999999988999999999999999887765432221111       1111111111100000 00000000 000


Q ss_pred             CCccccccCCCceeecccceeecCCc--cccccCCCccccccccccc-ccCeEEEEEccCCCEEEEeecCCcEEEEecCc
Q 013274          264 RAPQKRSANGNGVRQSSVGRIPAKGS--VRQRLHPGMLSSQDRATAH-YGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES  340 (446)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~h-~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~  340 (446)
                      +.......+.+++..++.+...+...  ...++          ..=| .-.+..+.++|.+++|+.|+.|+.+|+-+--+
T Consensus       172 ~~f~~dT~DltgieWsPdg~~laVwd~~Leykv----------~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~t  241 (447)
T KOG4497|consen  172 KEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKV----------YAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFT  241 (447)
T ss_pred             HhcCCCcccccCceECCCCcEEEEecchhhhee----------eeeeeccceeEEEeccccceEEeeccchhhhhhceee
Confidence            00011122334455555554433211  00000          0001 12377889999999999999999998754221


Q ss_pred             Cc-------------eee-------------------------------------------eeeeEEEeec---C---CC
Q 013274          341 GR-------------NTL-------------------------------------------VNFETVRLQT---S---KP  358 (446)
Q Consensus       341 ~~-------------~~~-------------------------------------------~~~~~~~~~~---~---~~  358 (446)
                      =+             +..                                           +.+..++...   +   ..
T Consensus       242 Wk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~  321 (447)
T KOG4497|consen  242 WKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGA  321 (447)
T ss_pred             eeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCccccc
Confidence            00             000                                           0000000000   0   11


Q ss_pred             eEEEEcCCCcEEEEeCC---CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCCC
Q 013274          359 IQLATTQDPAVVFVPCM---TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS  430 (446)
Q Consensus       359 ~~~~~~~~~~~~~~~~~---~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~~  430 (446)
                      -.+++++|..+++...+   +.+-+||+...++...|. ...+|....|.|....|+-|.....+-+|.|....+
T Consensus       322 g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~  395 (447)
T KOG4497|consen  322 GKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRV  395 (447)
T ss_pred             ceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceE
Confidence            23677777777766544   467889987666544332 456799999999999888776667799999987653

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.30  E-value=2.3e-10  Score=101.99  Aligned_cols=306  Identities=15%  Similarity=0.204  Sum_probs=173.6

Q ss_pred             eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEE-cccCcCCCCCCccccccc---------e-EEec------------
Q 013274           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYD-VQRATDYEGGGHIAKHRS---------V-FVVD------------   95 (446)
Q Consensus        39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd-~~~~~~~~~~~~~~~~~~---------~-~~~~------------   95 (446)
                      ++||...||+...-|. +.-+++.|.|.++|||- .+.++--....+.+..+.         . +++.            
T Consensus        20 ~eG~~d~vn~~~l~~~-e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~s   98 (404)
T KOG1409|consen   20 IEGSQDDVNAAILIPK-EEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALS   98 (404)
T ss_pred             hcCchhhhhhheeccC-CCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhh
Confidence            5799999998777654 45699999999999993 333221100011111100         0 0000            


Q ss_pred             --------cccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEee
Q 013274           96 --------KQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGT  167 (446)
Q Consensus        96 --------~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs  167 (446)
                              ......|...|..+.+. ....++++.+.|+.+.---.+.+..+-.+.+..     ..++...+-.....|-
T Consensus        99 edfnkm~~~r~~~~h~~~v~~~if~-~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~-----~~t~~~~d~~~~fvGd  172 (404)
T KOG1409|consen   99 EDFNKMTFLKDYLAHQARVSAIVFS-LTHEWVLSTGKDKQFAWHCTESGNRLGGYNFET-----PASALQFDALYAFVGD  172 (404)
T ss_pred             hhhhhcchhhhhhhhhcceeeEEec-CCceeEEEeccccceEEEeeccCCcccceEeec-----cCCCCceeeEEEEecc
Confidence                    01124688888776664 356788999999876655555554433222111     1111111111334455


Q ss_pred             CCCcEEEEeCCCC--ceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCccccc
Q 013274          168 EDVQVRLCDIASG--AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKR  245 (446)
Q Consensus       168 ~d~~v~vwd~~~~--~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (446)
                      ..+.|.+-.+...  .++.++.+|.+.+.+..|.|..+ +|.||+.|..+.+||+-...-..                  
T Consensus       173 ~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~-~LfSg~~d~~vi~wdigg~~g~~------------------  233 (404)
T KOG1409|consen  173 HSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQR-LLFSGASDHSVIMWDIGGRKGTA------------------  233 (404)
T ss_pred             cccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCc-EEEeccccCceEEEeccCCccee------------------
Confidence            5566666555433  56788999999999999998766 67899999999999985321000                  


Q ss_pred             ceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEE
Q 013274          246 KVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLL  325 (446)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~  325 (446)
                                                                               ....+|...|..+..-+--+.|+
T Consensus       234 ---------------------------------------------------------~el~gh~~kV~~l~~~~~t~~l~  256 (404)
T KOG1409|consen  234 ---------------------------------------------------------YELQGHNDKVQALSYAQHTRQLI  256 (404)
T ss_pred             ---------------------------------------------------------eeeccchhhhhhhhhhhhheeee
Confidence                                                                     01235666677777667778899


Q ss_pred             EeecCCcEEEEecCcCceeeeeeeEEE-------------------------ee--cCCCeEEE---EcCCCcEEEEeCC
Q 013274          326 SAGSDSRIRLWDVESGRNTLVNFETVR-------------------------LQ--TSKPIQLA---TTQDPAVVFVPCM  375 (446)
Q Consensus       326 sgs~D~~i~lWd~~~~~~~~~~~~~~~-------------------------~~--~~~~~~~~---~~~~~~~~~~~~~  375 (446)
                      |++.||.|.+||+...+....+...-.                         .+  ......++   .+.-......+..
T Consensus       257 S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e  336 (404)
T KOG1409|consen  257 SCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFE  336 (404)
T ss_pred             eccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccce
Confidence            999999999999986543221110000                         00  00000000   0000111111122


Q ss_pred             CceEEEEee-----c--CceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCC
Q 013274          376 TAVKAFDIW-----S--GKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR  427 (446)
Q Consensus       376 ~~~~~~d~~-----~--~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~  427 (446)
                      ..+|+-|--     +  ...+..+..-.-.|+.+.+-..-.+|+|++.|+.|+|||...
T Consensus       337 ~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~  395 (404)
T KOG1409|consen  337 FSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS  395 (404)
T ss_pred             eEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence            234443321     1  122333332223478888877788999999999999999863

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=1.1e-09  Score=108.21  Aligned_cols=218  Identities=17%  Similarity=0.167  Sum_probs=131.8

Q ss_pred             CccccEeEEEEeecCCcEEEEEeCC---CeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCC--cEEEE
Q 013274          101 GHKYAISSAIWYPVDTGLFVTGSYD---HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV--QVRLC  175 (446)
Q Consensus       101 gh~~~V~~~~~~~~~~~~l~s~s~D---~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~--~v~vw  175 (446)
                      .|...+.+..|+| +++.|+..+.+   ..|.+||+.+++........+......+++++.  .++++.+.++  .|++|
T Consensus       201 ~~~~~v~~p~wSp-Dg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~--~l~~~~s~~g~~~Iy~~  277 (433)
T PRK04922        201 RSAEPILSPAWSP-DGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGR--RLALTLSRDGNPEIYVM  277 (433)
T ss_pred             cCCCccccccCCC-CCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCC--EEEEEEeCCCCceEEEE
Confidence            3445566777877 78888877744   469999998876543333344444556776532  3444545544  69999


Q ss_pred             eCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEE--EccCCceeEEeecccccccCCCcccccceeecccc
Q 013274          176 DIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFW--DIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSL  253 (446)
Q Consensus       176 d~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iW--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (446)
                      |+.++.. ..+..+.......+|+|++++++.+...+|...+|  |+.+++..+ +                        
T Consensus       278 d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-l------------------------  331 (433)
T PRK04922        278 DLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-L------------------------  331 (433)
T ss_pred             ECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-e------------------------
Confidence            9988864 44555666667889999999765555455654444  443321100 0                        


Q ss_pred             ccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCC--
Q 013274          254 SAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS--  331 (446)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~--  331 (446)
                                                                          ..+......++|+|||++|+..+.++  
T Consensus       332 ----------------------------------------------------t~~g~~~~~~~~SpDG~~Ia~~~~~~~~  359 (433)
T PRK04922        332 ----------------------------------------------------TFQGNYNARASVSPDGKKIAMVHGSGGQ  359 (433)
T ss_pred             ----------------------------------------------------ecCCCCccCEEECCCCCEEEEEECCCCc
Confidence                                                                00001123468999999987654433  


Q ss_pred             -cEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC----CceEEEEeecCceEEEecccccceEEEEEcC
Q 013274          332 -RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM----TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS  406 (446)
Q Consensus       332 -~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSp  406 (446)
                       .|.+||+.++....  +..    ........+++++..++....    ..+.++++ ++.....+..+.+.+...+|||
T Consensus       360 ~~I~v~d~~~g~~~~--Lt~----~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~-~g~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        360 YRIAVMDLSTGSVRT--LTP----GSLDESPSFAPNGSMVLYATREGGRGVLAAVST-DGRVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             eeEEEEECCCCCeEE--CCC----CCCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEEcccCCCCCCCCccCC
Confidence             69999998765321  111    112234578888886655432    23455555 4555566666677777778876

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=1.4e-09  Score=107.35  Aligned_cols=232  Identities=15%  Similarity=0.148  Sum_probs=137.8

Q ss_pred             CeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeC---CCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCC
Q 013274          126 HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTE---DVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSS  202 (446)
Q Consensus       126 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~---d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~  202 (446)
                      .+|.+||........-......+....++|++   ..|+..+.   +..|++||+.+++.. .+..+.+...++.|+|++
T Consensus       184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg---~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG  259 (433)
T PRK04922        184 YALQVADSDGYNPQTILRSAEPILSPAWSPDG---KKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDG  259 (433)
T ss_pred             EEEEEECCCCCCceEeecCCCccccccCCCCC---CEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCC
Confidence            46999998654433222233345566677653   35555543   347999999888653 333444555688999999


Q ss_pred             CeEEEEeeCCC--cEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecc
Q 013274          203 EWILVTGGCDG--AIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSS  280 (446)
Q Consensus       203 ~~~l~S~s~Dg--~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (446)
                      +.++++.+.+|  .|.+||+.++...+ +                                                   
T Consensus       260 ~~l~~~~s~~g~~~Iy~~d~~~g~~~~-l---------------------------------------------------  287 (433)
T PRK04922        260 RRLALTLSRDGNPEIYVMDLGSRQLTR-L---------------------------------------------------  287 (433)
T ss_pred             CEEEEEEeCCCCceEEEEECCCCCeEE-C---------------------------------------------------
Confidence            98766766666  58888876543210 0                                                   


Q ss_pred             cceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeec-CCc--EEEEecCcCceeeeeeeEEEeecCC
Q 013274          281 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS-DSR--IRLWDVESGRNTLVNFETVRLQTSK  357 (446)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~-D~~--i~lWd~~~~~~~~~~~~~~~~~~~~  357 (446)
                                               ..+.+.....+|+|||++|+..+. ++.  |.++|+.++.....     ......
T Consensus       288 -------------------------t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l-----t~~g~~  337 (433)
T PRK04922        288 -------------------------TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL-----TFQGNY  337 (433)
T ss_pred             -------------------------ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-----ecCCCC
Confidence                                     011112345689999998876653 444  55667666543221     111223


Q ss_pred             CeEEEEcCCCcEEEEeCC----CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCC---CcEEEeCCCCCCC
Q 013274          358 PIQLATTQDPAVVFVPCM----TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND---RQILVWCPSRHIS  430 (446)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~----~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D---~~v~vW~~~~~~~  430 (446)
                      .....++|++..++....    ..+.+|++.+++.. .+. +........|||||++|+..+.+   ..|.++++++...
T Consensus       338 ~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~  415 (433)
T PRK04922        338 NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVR  415 (433)
T ss_pred             ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence            335688999887765432    25788998777654 333 33345577999999998866553   3477777766543


Q ss_pred             CCcCCCc-cCccCCCC
Q 013274          431 DGVDAGP-MQDQDNWS  445 (446)
Q Consensus       431 ~~~~~~~-~~~~~~~~  445 (446)
                      ..+..++ ......|+
T Consensus       416 ~~l~~~~g~~~~p~ws  431 (433)
T PRK04922        416 QRLVSADGEVREPAWS  431 (433)
T ss_pred             EEcccCCCCCCCCccC
Confidence            3333322 22334564

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=1e-09  Score=107.95  Aligned_cols=220  Identities=16%  Similarity=0.145  Sum_probs=134.9

Q ss_pred             CccccEeEEEEeecCCcEEEEEeCC---CeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEE--
Q 013274          101 GHKYAISSAIWYPVDTGLFVTGSYD---HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLC--  175 (446)
Q Consensus       101 gh~~~V~~~~~~~~~~~~l~s~s~D---~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vw--  175 (446)
                      .+...+.+..|+| +++.|+..+.+   ..|.+||+.+++........+......++|++.  .++++.+.++...+|  
T Consensus       193 ~~~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~--~la~~~~~~g~~~Iy~~  269 (427)
T PRK02889        193 SSPEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGR--TLAVALSRDGNSQIYTV  269 (427)
T ss_pred             cCCCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCC--EEEEEEccCCCceEEEE
Confidence            3455677778887 78888777653   359999999887644333445555667777542  344566677765555  


Q ss_pred             eCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCc-eeEEeecccccccCCCcccccceeeccccc
Q 013274          176 DIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG-CFRVLDQSQSQLGRRPPLLKRKVSISKSLS  254 (446)
Q Consensus       176 d~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (446)
                      |+.++. ...+..+.+......|+|++++++.++..+|...||.+.... ..+.+                         
T Consensus       270 d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l-------------------------  323 (427)
T PRK02889        270 NADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV-------------------------  323 (427)
T ss_pred             ECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE-------------------------
Confidence            555444 455655666667789999999865555556777787653210 00000                         


Q ss_pred             cCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCC---
Q 013274          255 AGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS---  331 (446)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~---  331 (446)
                                                              .           .+........|+|||++|+..+.++   
T Consensus       324 ----------------------------------------t-----------~~g~~~~~~~~SpDG~~Ia~~s~~~g~~  352 (427)
T PRK02889        324 ----------------------------------------T-----------FTGSYNTSPRISPDGKLLAYISRVGGAF  352 (427)
T ss_pred             ----------------------------------------e-----------cCCCCcCceEECCCCCEEEEEEccCCcE
Confidence                                                    0           0001122457999999988766554   


Q ss_pred             cEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCC----ceEEEEeecCceEEEecccccceEEEEEcCC
Q 013274          332 RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMT----AVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQ  407 (446)
Q Consensus       332 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd  407 (446)
                      .|.+||+.++......  .    ........++|++..++.....    .+.+.++ +++....+..+.+.+...+|||-
T Consensus       353 ~I~v~d~~~g~~~~lt--~----~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        353 KLYVQDLATGQVTALT--D----TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             EEEEEECCCCCeEEcc--C----CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence            5999999876532211  0    1122346788898877665432    2333344 56666677777777888888873

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.29  E-value=1.7e-10  Score=100.21  Aligned_cols=75  Identities=21%  Similarity=0.383  Sum_probs=55.8

Q ss_pred             CeEEEEEccCCCEEEEeecC---CcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCc
Q 013274          311 AVTGLKVTEDGMYLLSAGSD---SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGK  387 (446)
Q Consensus       311 ~v~~l~fs~dg~~l~sgs~D---~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  387 (446)
                      .++.|.|+|+|++|+.++.+   |.|.+||+.+.+. +.                                         
T Consensus       102 ~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~-i~-----------------------------------------  139 (194)
T PF08662_consen  102 PRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK-IS-----------------------------------------  139 (194)
T ss_pred             CceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE-ee-----------------------------------------
Confidence            46779999999999998754   5699999875321 00                                         


Q ss_pred             eEEEecccccceEEEEEcCCCCEEEEeeC------CCcEEEeCCCCCCCCC
Q 013274          388 TCLTFRGHYEYVNCCCFSSQDQELYTGGN------DRQILVWCPSRHISDG  432 (446)
Q Consensus       388 ~~~~l~gH~~~v~~~~fSpd~~~lvtgs~------D~~v~vW~~~~~~~~~  432 (446)
                         ++ .| ..+++++|||||++|+|++.      |+.++||+..+..+..
T Consensus       140 ---~~-~~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~  185 (194)
T PF08662_consen  140 ---TF-EH-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYK  185 (194)
T ss_pred             ---cc-cc-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEe
Confidence               00 12 23689999999999998764      8999999988765543

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.25  E-value=1e-09  Score=104.51  Aligned_cols=189  Identities=23%  Similarity=0.357  Sum_probs=138.1

Q ss_pred             cCCcEEEEEeCCCeEEEEECCCCeeeEEEec----CCceEEeee------ccC-----------CCCceEEEEeeCCCcE
Q 013274          114 VDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM----PGKVYRTAM------SPL-----------AASHMLIAAGTEDVQV  172 (446)
Q Consensus       114 ~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~----~~~~~~~~~------~~~-----------~~~~~~lasgs~d~~v  172 (446)
                      +...++|....||.+|+||+..+++...|..    .+......+      +|.           ..+...++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            3467899999999999999998876655542    222111111      111           1233568888999999


Q ss_pred             EEEeCCCCceeeeee--CCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeec
Q 013274          173 RLCDIASGAISQTLS--GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSIS  250 (446)
Q Consensus       173 ~vwd~~~~~~~~~l~--~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (446)
                      -++++..|+.-..+.  .|.+.|.++.++.+- ++|.|++.|+.+..|+......++...                    
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~~~~~~--------------------  141 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVIIRIWK--------------------  141 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEecccceeeeeec--------------------
Confidence            999999998887776  699999999987654 478999999999999987643322211                    


Q ss_pred             cccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecC
Q 013274          251 KSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD  330 (446)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D  330 (446)
                                                                              +-...+.+++++|||+.|++++  
T Consensus       142 --------------------------------------------------------~~~~~~~sl~is~D~~~l~~as--  163 (541)
T KOG4547|consen  142 --------------------------------------------------------EQKPLVSSLCISPDGKILLTAS--  163 (541)
T ss_pred             --------------------------------------------------------cCCCccceEEEcCCCCEEEecc--
Confidence                                                                    1122367889999999998764  


Q ss_pred             CcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCC---
Q 013274          331 SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQ---  407 (446)
Q Consensus       331 ~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd---  407 (446)
                      ++|++||++++                                             +.+.+|.||.++|.+++|..+   
T Consensus       164 ~~ik~~~~~~k---------------------------------------------evv~~ftgh~s~v~t~~f~~~~~g  198 (541)
T KOG4547|consen  164 RQIKVLDIETK---------------------------------------------EVVITFTGHGSPVRTLSFTTLIDG  198 (541)
T ss_pred             ceEEEEEccCc---------------------------------------------eEEEEecCCCcceEEEEEEEeccc
Confidence            57999988754                                             345678899999999999988   


Q ss_pred             --CCEEE-EeeCCCcEEEeCCC
Q 013274          408 --DQELY-TGGNDRQILVWCPS  426 (446)
Q Consensus       408 --~~~lv-tgs~D~~v~vW~~~  426 (446)
                        |.++. +...+.-+.+|-.+
T Consensus       199 ~~G~~vLssa~~~r~i~~w~v~  220 (541)
T KOG4547|consen  199 IIGKYVLSSAAAERGITVWVVE  220 (541)
T ss_pred             cccceeeeccccccceeEEEEE
Confidence              55654 56667888889555

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.24  E-value=1.1e-08  Score=90.69  Aligned_cols=158  Identities=15%  Similarity=0.265  Sum_probs=109.9

Q ss_pred             cccEeEEEEeecCCcEEEEEeCCCeEEEEECC-CCeeeEEEecCCceE-EeeeccCCCCceEEEE-eeCCCcEEEEeCCC
Q 013274          103 KYAISSAIWYPVDTGLFVTGSYDHYVKVWDTN-CTRVVMNFKMPGKVY-RTAMSPLAASHMLIAA-GTEDVQVRLCDIAS  179 (446)
Q Consensus       103 ~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~las-gs~d~~v~vwd~~~  179 (446)
                      ..+|.++...+   ++++.. ..+.|.||... ..+.++.+....... -.++.+.. +..+||. |-.-|.|.|-|+..
T Consensus        94 ~~~I~~V~l~r---~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~-~k~~LafPg~k~GqvQi~dL~~  168 (346)
T KOG2111|consen   94 NSEIKAVKLRR---DRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS-NKSLLAFPGFKTGQVQIVDLAS  168 (346)
T ss_pred             ccceeeEEEcC---CeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCC-CceEEEcCCCccceEEEEEhhh
Confidence            45676666643   455444 35689999986 445555444221111 12233322 2344554 44568999999987


Q ss_pred             Cce--eeeeeCCCCCeEEEEEecCCCeEEEEeeCCCc-EEEEEccCCceeEEeecccccccCCCcccccceeeccccccC
Q 013274          180 GAI--SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGA-IRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAG  256 (446)
Q Consensus       180 ~~~--~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~-I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (446)
                      .+.  ...+..|...|.+|+++.+|. ++||+|.-|| |||||..++..+..+..                         
T Consensus       169 ~~~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g~~l~E~RR-------------------------  222 (346)
T KOG2111|consen  169 TKPNAPSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTEDGTLLQELRR-------------------------  222 (346)
T ss_pred             cCcCCceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCCcEeeeeec-------------------------
Confidence            654  578899999999999999987 5899999998 99999988765433310                         


Q ss_pred             CCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEE
Q 013274          257 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW  336 (446)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lW  336 (446)
                                                              |         .....|.+|+||||+.+|+..|.-|+|+++
T Consensus       223 ----------------------------------------G---------~d~A~iy~iaFSp~~s~LavsSdKgTlHiF  253 (346)
T KOG2111|consen  223 ----------------------------------------G---------VDRADIYCIAFSPNSSWLAVSSDKGTLHIF  253 (346)
T ss_pred             ----------------------------------------C---------CchheEEEEEeCCCccEEEEEcCCCeEEEE
Confidence                                                    0         001249999999999999999999999999


Q ss_pred             ecCc
Q 013274          337 DVES  340 (446)
Q Consensus       337 d~~~  340 (446)
                      .++.
T Consensus       254 ~l~~  257 (346)
T KOG2111|consen  254 SLRD  257 (346)
T ss_pred             Eeec
Confidence            8875

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.23  E-value=6.5e-08  Score=92.62  Aligned_cols=291  Identities=16%  Similarity=0.162  Sum_probs=162.0

Q ss_pred             eEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEE-eCC
Q 013274           47 NSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG-SYD  125 (446)
Q Consensus        47 ~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~-s~D  125 (446)
                      ..+.|++ |++++..++.||.|.++|+.+.+...         .+..       |  ....++.+++ |+++++++ -.+
T Consensus        40 ~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~---------~i~~-------G--~~~~~i~~s~-DG~~~~v~n~~~   99 (369)
T PF02239_consen   40 AGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVA---------TIKV-------G--GNPRGIAVSP-DGKYVYVANYEP   99 (369)
T ss_dssp             EEEE-TT--SSEEEEEETTSEEEEEETTSSSEEE---------EEE--------S--SEEEEEEE---TTTEEEEEEEET
T ss_pred             eEEEecC-CCCEEEEEcCCCeEEEEECCcccEEE---------EEec-------C--CCcceEEEcC-CCCEEEEEecCC
Confidence            3467875 68888889999999999998764211         1110       1  1233455665 78887766 468


Q ss_pred             CeEEEEECCCCeeeEEEecCC--------ceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceee-eeeCCCCCeEEE
Q 013274          126 HYVKVWDTNCTRVVMNFKMPG--------KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ-TLSGHRDGIMTV  196 (446)
Q Consensus       126 ~~i~iWd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~-~l~~h~~~v~sv  196 (446)
                      +++.++|.++.+++..++..+        .+..+..++..  ..++++--..+.|-+.|..+...+. ....-.......
T Consensus       100 ~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~--~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~  177 (369)
T PF02239_consen  100 GTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGR--PEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDG  177 (369)
T ss_dssp             TEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSS--SEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEE
T ss_pred             CceeEeccccccceeecccccccccccCCCceeEEecCCC--CEEEEEEccCCeEEEEEeccccccceeeeccccccccc
Confidence            999999999999888776432        22233333332  2344444445778787877654332 222234456678


Q ss_pred             EEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCce
Q 013274          197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGV  276 (446)
Q Consensus       197 ~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (446)
                      .|+|++++++++...++.|-++|+.+++....++.....                                         
T Consensus       178 ~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p-----------------------------------------  216 (369)
T PF02239_consen  178 GFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKP-----------------------------------------  216 (369)
T ss_dssp             EE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSB-----------------------------------------
T ss_pred             ccCcccceeeecccccceeEEEeeccceEEEEeeccccc-----------------------------------------
Confidence            899999988887778889999999887665544321110                                         


Q ss_pred             eecccceeecCCccccccCCCccccccccccc--ccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEee
Q 013274          277 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAH--YGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQ  354 (446)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~  354 (446)
                               ..+....             -.|  .+++..  ....+...++.-....+.+||..+-+.    ...+.. 
T Consensus       217 ---------~~~~~~~-------------~php~~g~vw~--~~~~~~~~~~~ig~~~v~v~d~~~wkv----v~~I~~-  267 (369)
T PF02239_consen  217 ---------HPGPGAN-------------FPHPGFGPVWA--TSGLGYFAIPLIGTDPVSVHDDYAWKV----VKTIPT-  267 (369)
T ss_dssp             ---------EETTEEE-------------EEETTTEEEEE--EEBSSSSEEEEEE--TTT-STTTBTSE----EEEEE--
T ss_pred             ---------ccccccc-------------ccCCCcceEEe--eccccceecccccCCccccchhhcCeE----EEEEEC-
Confidence                     0000000             011  123332  223344443333344677788776442    122222 


Q ss_pred             cCCCeEEEEcCCCcEEEEeC---C--CceEEEEeecCceEEEecccc-cceEEEEEcCCCCEEEEeeCCC--cEEEeCCC
Q 013274          355 TSKPIQLATTQDPAVVFVPC---M--TAVKAFDIWSGKTCLTFRGHY-EYVNCCCFSSQDQELYTGGNDR--QILVWCPS  426 (446)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~---~--~~~~~~d~~~~~~~~~l~gH~-~~v~~~~fSpd~~~lvtgs~D~--~v~vW~~~  426 (446)
                      .+.+.-+..+|++..+++..   .  ..+.++|..+.+...++.... ..+..+.|++||+.+.-...|+  .|.|+|..
T Consensus       268 ~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~  347 (369)
T PF02239_consen  268 QGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAK  347 (369)
T ss_dssp             SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETT
T ss_pred             CCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECC
Confidence            23446678889998888871   1  478999999988877775333 3689999999999866444433  69999887


Q ss_pred             CCC
Q 013274          427 RHI  429 (446)
Q Consensus       427 ~~~  429 (446)
                      +-.
T Consensus       348 Tl~  350 (369)
T PF02239_consen  348 TLK  350 (369)
T ss_dssp             TTE
T ss_pred             CcE
Confidence            654

...

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.22  E-value=5.7e-10  Score=98.62  Aligned_cols=221  Identities=14%  Similarity=0.147  Sum_probs=153.7

Q ss_pred             ccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCe---eeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeC-C
Q 013274          104 YAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR---VVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI-A  178 (446)
Q Consensus       104 ~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~-~  178 (446)
                      .+|+|.+|.+ +.+.+|.+-..+.|.|+.....+   ...++.. ...+..+.+.+..   ..|++++.|..-++|.. .
T Consensus        11 ~pitchAwn~-drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~s---nrIvtcs~drnayVw~~~~   86 (361)
T KOG1523|consen   11 EPITCHAWNS-DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKS---NRIVTCSHDRNAYVWTQPS   86 (361)
T ss_pred             CceeeeeecC-CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCC---CceeEccCCCCccccccCC
Confidence            4688888886 78899999999999999877655   3334432 3446667777654   46899999999999998 5


Q ss_pred             CCc--eeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccC
Q 013274          179 SGA--ISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAG  256 (446)
Q Consensus       179 ~~~--~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (446)
                      .++  +.-.|..++..+++|.|+|... .|+.||.-..|-+|=+......=                             
T Consensus        87 ~~~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWW-----------------------------  136 (361)
T KOG1523|consen   87 GGTWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWW-----------------------------  136 (361)
T ss_pred             CCeeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEeccccee-----------------------------
Confidence            553  3445677899999999999876 58999998899988654211000                             


Q ss_pred             CCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEE
Q 013274          257 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW  336 (446)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lW  336 (446)
                                                                 .....-+.+.+.|++++|+|++-+|++|+.|+.+|++
T Consensus       137 -------------------------------------------VsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVf  173 (361)
T KOG1523|consen  137 -------------------------------------------VSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVF  173 (361)
T ss_pred             -------------------------------------------hhhhhCCccccceeeeeccCCcceecccccCcceeEE
Confidence                                                       0000012345569999999999999999999999999


Q ss_pred             ecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeC
Q 013274          337 DVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGN  416 (446)
Q Consensus       337 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~  416 (446)
                      ...-.     .++.   ....      +|=+..             +-=|.++.++..--+.|..+.|||+|..|+=.+.
T Consensus       174 SayIK-----~Vde---kpap------~pWgsk-------------~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H  226 (361)
T KOG1523|consen  174 SAYIK-----GVDE---KPAP------TPWGSK-------------MPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH  226 (361)
T ss_pred             EEeee-----cccc---CCCC------CCCccC-------------CcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC
Confidence            64311     0111   0000      000000             0013344455556789999999999999999999


Q ss_pred             CCcEEEeCCCCC
Q 013274          417 DRQILVWCPSRH  428 (446)
Q Consensus       417 D~~v~vW~~~~~  428 (446)
                      |.++.+=+...+
T Consensus       227 ds~v~~~da~~p  238 (361)
T KOG1523|consen  227 DSTVSFVDAAGP  238 (361)
T ss_pred             CCceEEeecCCC
Confidence            999999887655

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.21  E-value=1.6e-10  Score=107.40  Aligned_cols=260  Identities=18%  Similarity=0.236  Sum_probs=170.5

Q ss_pred             ccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEec--CCceEEeeeccCCCCceEEEEeeCCCcEEEEe
Q 013274           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM--PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCD  176 (446)
Q Consensus        99 ~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd  176 (446)
                      +.+|++.|..+.|.. .|+.++|||+|..|.+||-..+.....|..  ...++...|.|...+. -+++.+.|+.|++=.
T Consensus       138 L~~H~GcVntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~-ti~~~s~dgqvr~s~  215 (559)
T KOG1334|consen  138 LNKHKGCVNTVHFNQ-RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDR-TIVTSSRDGQVRVSE  215 (559)
T ss_pred             ccCCCCccceeeecc-cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCc-CceeccccCceeeee
Confidence            468999999988875 789999999999999999887777766642  2234555577765443 467888999999887


Q ss_pred             CCCCce---eeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeecccc
Q 013274          177 IASGAI---SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSL  253 (446)
Q Consensus       177 ~~~~~~---~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (446)
                      +....+   ...+..|.++|.-++.-|+..+.|.|+++|+.+.-.|+++......+..                      
T Consensus       216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~c----------------------  273 (559)
T KOG1334|consen  216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVC----------------------  273 (559)
T ss_pred             eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeee----------------------
Confidence            643322   3566789999999999999988899999999999999986532111100                      


Q ss_pred             ccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccc---cCeEEEEEccCCC-EEEEeec
Q 013274          254 SAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHY---GAVTGLKVTEDGM-YLLSAGS  329 (446)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~l~fs~dg~-~l~sgs~  329 (446)
                                                             +            ..+.   -....++..|-.. ++++|+.
T Consensus       274 ---------------------------------------r------------~~~~~~~v~L~~Ia~~P~nt~~faVgG~  302 (559)
T KOG1334|consen  274 ---------------------------------------R------------EADEKERVGLYTIAVDPRNTNEFAVGGS  302 (559)
T ss_pred             ---------------------------------------e------------ccCCccceeeeeEecCCCCccccccCCh
Confidence                                                   0            0000   1246677778665 7899999


Q ss_pred             CCcEEEEecCcCcee-----eeeee--EEE-eecCCCeEEEEcCCCcEEEEe-CCCceEEEEe--ecC----------ce
Q 013274          330 DSRIRLWDVESGRNT-----LVNFE--TVR-LQTSKPIQLATTQDPAVVFVP-CMTAVKAFDI--WSG----------KT  388 (446)
Q Consensus       330 D~~i~lWd~~~~~~~-----~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~--~~~----------~~  388 (446)
                      |..+|+||...-+..     +..+-  .+. ........++++.++.-+.++ ....+.++.-  ..|          ..
T Consensus       303 dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~  382 (559)
T KOG1334|consen  303 DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQY  382 (559)
T ss_pred             hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhc
Confidence            999999998752211     00000  000 011223345666554433333 3334455521  112          12


Q ss_pred             -EEEecccccc--eEEEEE-cCCCCEEEEeeCCCcEEEeCCCCCCCCCc
Q 013274          389 -CLTFRGHYEY--VNCCCF-SSQDQELYTGGNDRQILVWCPSRHISDGV  433 (446)
Q Consensus       389 -~~~l~gH~~~--v~~~~f-Spd~~~lvtgs~D~~v~vW~~~~~~~~~~  433 (446)
                       ...|.||.+.  |-++-| -|...+++|||.=|.|.||+-.+...-++
T Consensus       383 ~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~  431 (559)
T KOG1334|consen  383 VKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRF  431 (559)
T ss_pred             cchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHH
Confidence             2348899754  445544 58899999999999999999886654433

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.20  E-value=2.6e-08  Score=95.30  Aligned_cols=274  Identities=17%  Similarity=0.113  Sum_probs=156.4

Q ss_pred             EEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCe
Q 013274           58 YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR  137 (446)
Q Consensus        58 ~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~  137 (446)
                      ++++-..+++|.|.|.++.+..            ..+.    .+  +.+.....+++|++++++++.|+.|.++|+.+.+
T Consensus         8 ~~V~~~~~~~v~viD~~t~~~~------------~~i~----~~--~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~   69 (369)
T PF02239_consen    8 FYVVERGSGSVAVIDGATNKVV------------ARIP----TG--GAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK   69 (369)
T ss_dssp             EEEEEGGGTEEEEEETTT-SEE------------EEEE-----S--TTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS
T ss_pred             EEEEecCCCEEEEEECCCCeEE------------EEEc----CC--CCceeEEEecCCCCEEEEEcCCCeEEEEECCccc
Confidence            4566778999999998765421            0110    01  1222334445589999999999999999999999


Q ss_pred             eeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCC-------CCCeEEEEEecCCCeEEEEee
Q 013274          138 VVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGH-------RDGIMTVEWSTSSEWILVTGG  210 (446)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h-------~~~v~sv~~s~~~~~~l~S~s  210 (446)
                      .+.++........+++++++.  .++++...++.+.++|.++.+.++.++..       ...+.+|..+|..+.++++--
T Consensus        70 ~v~~i~~G~~~~~i~~s~DG~--~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk  147 (369)
T PF02239_consen   70 VVATIKVGGNPRGIAVSPDGK--YVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK  147 (369)
T ss_dssp             EEEEEE-SSEEEEEEE--TTT--EEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET
T ss_pred             EEEEEecCCCcceEEEcCCCC--EEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEc
Confidence            999998877788888887543  34445557899999999999988887643       345678888888775444433


Q ss_pred             CCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCcc
Q 013274          211 CDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSV  290 (446)
Q Consensus       211 ~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (446)
                      +-+.|.+-|....+.+..-                                                             
T Consensus       148 d~~~I~vVdy~d~~~~~~~-------------------------------------------------------------  166 (369)
T PF02239_consen  148 DTGEIWVVDYSDPKNLKVT-------------------------------------------------------------  166 (369)
T ss_dssp             TTTEEEEEETTTSSCEEEE-------------------------------------------------------------
T ss_pred             cCCeEEEEEecccccccee-------------------------------------------------------------
Confidence            3466666665442211000                                                             


Q ss_pred             ccccCCCcccccccccccccCeEEEEEccCCCEEEE-eecCCcEEEEecCcCceeeeeeeEEEeecCCCeE---------
Q 013274          291 RQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLS-AGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQ---------  360 (446)
Q Consensus       291 ~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s-gs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~---------  360 (446)
                        .            ...........|+|+|+|++. ...+..|-++|.++++.. ..+.........+..         
T Consensus       167 --~------------i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v-~~i~~g~~p~~~~~~~~php~~g~  231 (369)
T PF02239_consen  167 --T------------IKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLV-ALIDTGKKPHPGPGANFPHPGFGP  231 (369)
T ss_dssp             --E------------EE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEE-EEEE-SSSBEETTEEEEEETTTEE
T ss_pred             --e------------ecccccccccccCcccceeeecccccceeEEEeeccceEE-EEeeccccccccccccccCCCcce
Confidence              0            000012345679999998755 456678999998876432 111110000001111         


Q ss_pred             -EEEcCCCcE-EEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEe----eCCCcEEEeCCCCC
Q 013274          361 -LATTQDPAV-VFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTG----GNDRQILVWCPSRH  428 (446)
Q Consensus       361 -~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtg----s~D~~v~vW~~~~~  428 (446)
                       ......+.. +...+.+.+.+||..+++.++++....+. .-+.-+||+++|...    ....+|.|+|..+-
T Consensus       232 vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl  304 (369)
T PF02239_consen  232 VWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL  304 (369)
T ss_dssp             EEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGT
T ss_pred             EEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCc
Confidence             111111111 12223345667888889999999987777 667779999999987    45588999998764

...

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.20  E-value=1.4e-08  Score=100.28  Aligned_cols=118  Identities=14%  Similarity=0.166  Sum_probs=78.6

Q ss_pred             CccccEeEEEEeecCCcEEEEEeC---CCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCC--cEEEE
Q 013274          101 GHKYAISSAIWYPVDTGLFVTGSY---DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV--QVRLC  175 (446)
Q Consensus       101 gh~~~V~~~~~~~~~~~~l~s~s~---D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~--~v~vw  175 (446)
                      .|...+.+..|+| |++.|+..+.   +..|.+||+.+++........+......++|++  ..++++.+.++  .|++|
T Consensus       199 ~~~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG--~~la~~~~~~g~~~Iy~~  275 (435)
T PRK05137        199 DGSSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDG--RKVVMSLSQGGNTDIYTM  275 (435)
T ss_pred             cCCCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCC--CEEEEEEecCCCceEEEE
Confidence            4556788888887 7888877664   468999999888654333344555566777753  23445555555  47888


Q ss_pred             eCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCC--cEEEEEccC
Q 013274          176 DIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDG--AIRFWDIRR  222 (446)
Q Consensus       176 d~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg--~I~iWd~~~  222 (446)
                      |++++.. ..+..+.+......|+|++++++.+...+|  .|.+||+..
T Consensus       276 d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g  323 (435)
T PRK05137        276 DLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG  323 (435)
T ss_pred             ECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC
Confidence            9988765 456666666778999999997654444444  455666543

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.19  E-value=1.9e-10  Score=108.12  Aligned_cols=175  Identities=18%  Similarity=0.375  Sum_probs=108.0

Q ss_pred             ceEEEEeeCCCcEEEEeCCCCceeeee--eC--CCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeeccccc
Q 013274          160 HMLIAAGTEDVQVRLCDIASGAISQTL--SG--HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQ  235 (446)
Q Consensus       160 ~~~lasgs~d~~v~vwd~~~~~~~~~l--~~--h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~  235 (446)
                      ..-++.|-.-+.|.+.|....+..+-+  ..  ....|+++.|.|.++.+++.+-++|.+.+||.....           
T Consensus       185 g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~-----------  253 (636)
T KOG2394|consen  185 GLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC-----------  253 (636)
T ss_pred             CcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc-----------
Confidence            344667777788988887654322211  11  246799999999988888888999999999863210           


Q ss_pred             ccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEE
Q 013274          236 LGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGL  315 (446)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l  315 (446)
                       +...+....                        ...+..+.+... +     ....      ..+..++.--.+.|+..
T Consensus       254 -~~t~p~~~~------------------------~k~~~~f~i~t~-k-----sk~~------rNPv~~w~~~~g~in~f  296 (636)
T KOG2394|consen  254 -GATAPSYQA------------------------LKDGDQFAILTS-K-----SKKT------RNPVARWHIGEGSINEF  296 (636)
T ss_pred             -cCCCCcccc------------------------cCCCCeeEEeee-e-----cccc------CCccceeEeccccccce
Confidence             000000000                        000000000000 0     0000      00111122224579999


Q ss_pred             EEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEeccc
Q 013274          316 KVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGH  395 (446)
Q Consensus       316 ~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH  395 (446)
                      +|+|||++||+-|.||.+||+|..+..-  .                                           ..+..-
T Consensus       297 ~FS~DG~~LA~VSqDGfLRvF~fdt~eL--l-------------------------------------------g~mkSY  331 (636)
T KOG2394|consen  297 AFSPDGKYLATVSQDGFLRIFDFDTQEL--L-------------------------------------------GVMKSY  331 (636)
T ss_pred             eEcCCCceEEEEecCceEEEeeccHHHH--H-------------------------------------------HHHHhh
Confidence            9999999999999999999999876321  0                                           001112


Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCcEEEeCCCC
Q 013274          396 YEYVNCCCFSSQDQELYTGGNDRQILVWCPSR  427 (446)
Q Consensus       396 ~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~  427 (446)
                      -+...||+|||||+++|||++|-.|.||..+.
T Consensus       332 FGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e  363 (636)
T KOG2394|consen  332 FGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE  363 (636)
T ss_pred             ccceEEEEEcCCccEEEecCCcceEEEEEecc
Confidence            35689999999999999999999999998863

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.14  E-value=2.4e-08  Score=98.29  Aligned_cols=206  Identities=14%  Similarity=0.162  Sum_probs=123.4

Q ss_pred             CeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeC---CCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCC
Q 013274          126 HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTE---DVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSS  202 (446)
Q Consensus       126 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~---d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~  202 (446)
                      ..|.+||.............+.+....++|++   ..|+..+.   ...|++||+.+++.. .+....+.+.+.+|+|++
T Consensus       176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG---~~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG  251 (427)
T PRK02889        176 YQLQISDADGQNAQSALSSPEPIISPAWSPDG---TKLAYVSFESKKPVVYVHDLATGRRR-VVANFKGSNSAPAWSPDG  251 (427)
T ss_pred             cEEEEECCCCCCceEeccCCCCcccceEcCCC---CEEEEEEccCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCC
Confidence            46777777543322222334455667777754   34555443   246999999988653 344444566789999999


Q ss_pred             CeEEEEeeCCCcEEEEEccCCc-eeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeeccc
Q 013274          203 EWILVTGGCDGAIRFWDIRRAG-CFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV  281 (446)
Q Consensus       203 ~~~l~S~s~Dg~I~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (446)
                      +.++++.+.+|...||.+.... ..+.                                                     
T Consensus       252 ~~la~~~~~~g~~~Iy~~d~~~~~~~~-----------------------------------------------------  278 (427)
T PRK02889        252 RTLAVALSRDGNSQIYTVNADGSGLRR-----------------------------------------------------  278 (427)
T ss_pred             CEEEEEEccCCCceEEEEECCCCCcEE-----------------------------------------------------
Confidence            9876678888888888653210 0000                                                     


Q ss_pred             ceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeec-CCcEEEEecC--cCceeeeeeeEEEeecCCC
Q 013274          282 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS-DSRIRLWDVE--SGRNTLVNFETVRLQTSKP  358 (446)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~-D~~i~lWd~~--~~~~~~~~~~~~~~~~~~~  358 (446)
                                             ...+.+......|+|||++|+..+. ++...+|.+.  ++......     ......
T Consensus       279 -----------------------lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-----~~g~~~  330 (427)
T PRK02889        279 -----------------------LTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-----FTGSYN  330 (427)
T ss_pred             -----------------------CCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-----cCCCCc
Confidence                                   0011122345679999998875543 5677777553  33322111     112223


Q ss_pred             eEEEEcCCCcEEEEeCC----CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCC
Q 013274          359 IQLATTQDPAVVFVPCM----TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDR  418 (446)
Q Consensus       359 ~~~~~~~~~~~~~~~~~----~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~  418 (446)
                      ....++|++..++....    ..+.+||+.+++... +..+ .......|+|||+.|+..+.++
T Consensus       331 ~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        331 TSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             CceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEecC
Confidence            34678899887765432    257889987776543 3222 2346789999999988766544

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.11  E-value=1.1e-10  Score=107.71  Aligned_cols=185  Identities=15%  Similarity=0.208  Sum_probs=142.5

Q ss_pred             cCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCe
Q 013274          114 VDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI  193 (446)
Q Consensus       114 ~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v  193 (446)
                      .+|..++-|+.-|.|-.+|-.++.+...+..-..+..+.|...   ..++|++ +...++|||- .|..+..++.| ..|
T Consensus       139 rnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHn---eq~~AVA-QK~y~yvYD~-~GtElHClk~~-~~v  212 (545)
T KOG1272|consen  139 RNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHN---EQFFAVA-QKKYVYVYDN-NGTELHCLKRH-IRV  212 (545)
T ss_pred             CCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcc---hHHHHhh-hhceEEEecC-CCcEEeehhhc-Cch
Confidence            4788999999999999999999998887777667777776552   3355554 5678999994 56777777766 568


Q ss_pred             EEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCC
Q 013274          194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANG  273 (446)
Q Consensus       194 ~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (446)
                      ..+.|-|.. ++|++++..|-++.-|+..++.+..+.                                           
T Consensus       213 ~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~~~-------------------------------------------  248 (545)
T KOG1272|consen  213 ARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVASIR-------------------------------------------  248 (545)
T ss_pred             hhhcccchh-heeeecccCCceEEEeechhhhhHHHH-------------------------------------------
Confidence            899999975 578999999999988987765322110                                           


Q ss_pred             CceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEe
Q 013274          274 NGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRL  353 (446)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~  353 (446)
                                                       ...+.+..|.-+|-+..+-+|...|+|-+|...+..+          
T Consensus       249 ---------------------------------t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP----------  285 (545)
T KOG1272|consen  249 ---------------------------------TGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP----------  285 (545)
T ss_pred             ---------------------------------ccCCccchhhcCCccceEEEcCCCceEEecCCCCcch----------
Confidence                                             0123456666778788888999999999998765321          


Q ss_pred             ecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274          354 QTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS  426 (446)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~  426 (446)
                                                         +..+..|.++|.++++.++|++.||.+.|+.++|||+.
T Consensus       286 -----------------------------------LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR  323 (545)
T KOG1272|consen  286 -----------------------------------LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLR  323 (545)
T ss_pred             -----------------------------------HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeec
Confidence                                               22345699999999999999999999999999999986

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.08  E-value=2.4e-08  Score=86.85  Aligned_cols=112  Identities=18%  Similarity=0.376  Sum_probs=81.2

Q ss_pred             cccEeEEEEeecCCcEEE--EEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEee---CCCcEEEEeC
Q 013274          103 KYAISSAIWYPVDTGLFV--TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGT---EDVQVRLCDI  177 (446)
Q Consensus       103 ~~~V~~~~~~~~~~~~l~--s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs---~d~~v~vwd~  177 (446)
                      .+.|.++.|+| +++.||  +|..+..|.+||++ ++.+..+. ......+.++|.+   .+++.++   ..|.|.+||+
T Consensus        59 ~~~I~~~~WsP-~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP~G---~~l~~~g~~n~~G~l~~wd~  132 (194)
T PF08662_consen   59 EGPIHDVAWSP-NGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSPDG---RFLVLAGFGNLNGDLEFWDV  132 (194)
T ss_pred             CCceEEEEECc-CCCEEEEEEccCCcccEEEcCc-ccEeEeec-CCCceEEEECCCC---CEEEEEEccCCCcEEEEEEC
Confidence            44699999998 566654  34567899999997 56666654 3456778888864   3555554   3467999999


Q ss_pred             CCCceeeeeeCCCCCeEEEEEecCCCeEEEEee-----CCCcEEEEEccC
Q 013274          178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGG-----CDGAIRFWDIRR  222 (446)
Q Consensus       178 ~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s-----~Dg~I~iWd~~~  222 (446)
                      ++.+.+.... | ..+..+.|+|+|++++.+.+     .|+.++||+...
T Consensus       133 ~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  133 RKKKKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             CCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence            9888776664 3 34789999999998544444     389999999853

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.07  E-value=2.5e-06  Score=81.58  Aligned_cols=249  Identities=15%  Similarity=0.199  Sum_probs=146.9

Q ss_pred             EEEEeecCCcEEEEEeC----CCeEEEEECCCC--ee--eEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCC
Q 013274          108 SAIWYPVDTGLFVTGSY----DHYVKVWDTNCT--RV--VMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA  178 (446)
Q Consensus       108 ~~~~~~~~~~~l~s~s~----D~~i~iWd~~~~--~~--~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~  178 (446)
                      .+.++| ++++|++...    ++.|..|++...  ++  +..... ......+++.+..  ..++++-..++.|.+++++
T Consensus        41 ~l~~~~-~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g--~~l~vany~~g~v~v~~l~  117 (345)
T PF10282_consen   41 WLAVSP-DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDG--RFLYVANYGGGSVSVFPLD  117 (345)
T ss_dssp             CEEE-T-TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTS--SEEEEEETTTTEEEEEEEC
T ss_pred             eEEEEe-CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCC--CEEEEEEccCCeEEEEEcc
Confidence            345555 6677777766    579999988653  33  233332 2233456665542  3445555568999999998


Q ss_pred             C-Cceeee--eeC-----------CCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCce-eEEeecccccccCCCccc
Q 013274          179 S-GAISQT--LSG-----------HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGC-FRVLDQSQSQLGRRPPLL  243 (446)
Q Consensus       179 ~-~~~~~~--l~~-----------h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~-~~~~~~~~~~~~~~~~~~  243 (446)
                      . +.+...  +..           -....-++.|+|++++++++.-....|.+|++..... +....             
T Consensus       118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~-------------  184 (345)
T PF10282_consen  118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVD-------------  184 (345)
T ss_dssp             TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEE-------------
T ss_pred             CCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEee-------------
Confidence            7 433221  111           1234678999999998777655566899999865321 10000             


Q ss_pred             ccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCE
Q 013274          244 KRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMY  323 (446)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~  323 (446)
                                                             .+        ..            .....-+.++|+|+|++
T Consensus       185 ---------------------------------------~~--------~~------------~~G~GPRh~~f~pdg~~  205 (345)
T PF10282_consen  185 ---------------------------------------SI--------KV------------PPGSGPRHLAFSPDGKY  205 (345)
T ss_dssp             ---------------------------------------EE--------EC------------STTSSEEEEEE-TTSSE
T ss_pred             ---------------------------------------cc--------cc------------ccCCCCcEEEEcCCcCE
Confidence                                                   00        00            00122677899999987


Q ss_pred             E-EEeecCCcEEEEecC--cCceeeee-eeEEEee--c-CCCeEEEEcCCCcEEEEeC--CCceEEEEee--cCce--EE
Q 013274          324 L-LSAGSDSRIRLWDVE--SGRNTLVN-FETVRLQ--T-SKPIQLATTQDPAVVFVPC--MTAVKAFDIW--SGKT--CL  390 (446)
Q Consensus       324 l-~sgs~D~~i~lWd~~--~~~~~~~~-~~~~~~~--~-~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~--~~~~--~~  390 (446)
                      + ++.-.+++|.++++.  ++...... +..+...  . ..+..++++|++..+++..  .+.+.++++.  ++++  +.
T Consensus       206 ~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~  285 (345)
T PF10282_consen  206 AYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQ  285 (345)
T ss_dssp             EEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEE
T ss_pred             EEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEE
Confidence            6 566778889999988  33221111 1111111  1 1356688999999888864  4688999993  3443  33


Q ss_pred             EecccccceEEEEEcCCCCEEEEee-CCCcEEEeCC--CCCCCC
Q 013274          391 TFRGHYEYVNCCCFSSQDQELYTGG-NDRQILVWCP--SRHISD  431 (446)
Q Consensus       391 ~l~gH~~~v~~~~fSpd~~~lvtgs-~D~~v~vW~~--~~~~~~  431 (446)
                      .+...-.....++|+|||++|+.+. .++.|.+|+.  +++.+.
T Consensus       286 ~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~  329 (345)
T PF10282_consen  286 TVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLT  329 (345)
T ss_dssp             EEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred             EEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEE
Confidence            4444445589999999999988655 6778999965  455443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.05  E-value=9.1e-07  Score=83.08  Aligned_cols=268  Identities=12%  Similarity=0.076  Sum_probs=155.3

Q ss_pred             CeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEee---------CCCcEEEEeCCCCceeeeeeCCCC-----
Q 013274          126 HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGT---------EDVQVRLCDIASGAISQTLSGHRD-----  191 (446)
Q Consensus       126 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs---------~d~~v~vwd~~~~~~~~~l~~h~~-----  191 (446)
                      ++|.+.|.++++.+..+.......-+ ++++.  ..+.++.+         .+..|.+||+.+.+.+..+.-..+     
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg--~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~  103 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDG--SFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV  103 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCcee-ECCCC--CEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence            78999999999988887754333333 66653  23444444         578999999999999888763222     


Q ss_pred             --CeEEEEEecCCCeEEEEe-eCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccc
Q 013274          192 --GIMTVEWSTSSEWILVTG-GCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQK  268 (446)
Q Consensus       192 --~v~sv~~s~~~~~~l~S~-s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (446)
                        .-...+++|++++++++- +.+..|-+.|+.+.+.+..+....     +..+..         +...       ....
T Consensus       104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-----~~~vy~---------t~e~-------~~~~  162 (352)
T TIGR02658       104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-----CYHIFP---------TAND-------TFFM  162 (352)
T ss_pred             cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-----CcEEEE---------ecCC-------ccEE
Confidence              234778999999876554 347999999999998877665311     000000         0000       0000


Q ss_pred             cccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEcc-CCCEEEEeecCCcEEEEecCcCceee-e
Q 013274          269 RSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE-DGMYLLSAGSDSRIRLWDVESGRNTL-V  346 (446)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~sgs~D~~i~lWd~~~~~~~~-~  346 (446)
                      ...++.....    .+...+.....  ...+...........+    .|++ ||+++..... |+|.+.|+....... .
T Consensus       163 ~~~Dg~~~~v----~~d~~g~~~~~--~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~  231 (352)
T TIGR02658       163 HCRDGSLAKV----GYGTKGNPKIK--PTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLP  231 (352)
T ss_pred             EeecCceEEE----EecCCCceEEe--eeeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecc
Confidence            0000000000    00000000000  0000000000000111    3455 8888766555 999999976543211 1


Q ss_pred             eeeEE-------EeecCCCeEEEEcCCCcEEEEeC-----------CCceEEEEeecCceEEEecccccceEEEEEcCCC
Q 013274          347 NFETV-------RLQTSKPIQLATTQDPAVVFVPC-----------MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQD  408 (446)
Q Consensus       347 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~  408 (446)
                      .+...       ....+....+++++++..+++.+           .+.+.++|..+++....+.. ...++.++||||+
T Consensus       232 ~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dg  310 (352)
T TIGR02658       232 AIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDA  310 (352)
T ss_pred             eeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCC
Confidence            11111       12233344588999988888843           14688899999998887764 2368999999999


Q ss_pred             C-EEEEee-CCCcEEEeCCCCCC
Q 013274          409 Q-ELYTGG-NDRQILVWCPSRHI  429 (446)
Q Consensus       409 ~-~lvtgs-~D~~v~vW~~~~~~  429 (446)
                      + +|++.. .++.|.|.|..+.+
T Consensus       311 kp~lyvtn~~s~~VsViD~~t~k  333 (352)
T TIGR02658       311 KPLLYALSTGDKTLYIFDAETGK  333 (352)
T ss_pred             CeEEEEeCCCCCcEEEEECcCCe
Confidence            9 888655 67889999998774

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.05  E-value=1.5e-07  Score=92.79  Aligned_cols=117  Identities=21%  Similarity=0.230  Sum_probs=73.8

Q ss_pred             ccccEeEEEEeecCCcEEEEEeCC---CeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCC--cEEEEe
Q 013274          102 HKYAISSAIWYPVDTGLFVTGSYD---HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV--QVRLCD  176 (446)
Q Consensus       102 h~~~V~~~~~~~~~~~~l~s~s~D---~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~--~v~vwd  176 (446)
                      +...+.+..|+| ++++|+.++.+   ..|.+||+.+++........+......++++.  ..++++.+.++  .|++||
T Consensus       188 ~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg--~~l~~~~~~~~~~~i~~~d  264 (417)
T TIGR02800       188 SREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDG--SKLAVSLSKDGNPDIYVMD  264 (417)
T ss_pred             CCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCC--CEEEEEECCCCCccEEEEE
Confidence            333455667776 78888776654   48999999987654433444555556777653  23444544443  689999


Q ss_pred             CCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCc--EEEEEccC
Q 013274          177 IASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGA--IRFWDIRR  222 (446)
Q Consensus       177 ~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~--I~iWd~~~  222 (446)
                      +.++.. ..+..+........|+|++++++++...++.  |.++|+.+
T Consensus       265 ~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~  311 (417)
T TIGR02800       265 LDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG  311 (417)
T ss_pred             CCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC
Confidence            988754 3444455555677899999876555544444  55555543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.04  E-value=3.8e-08  Score=94.06  Aligned_cols=163  Identities=14%  Similarity=0.128  Sum_probs=109.3

Q ss_pred             cCCCCEEEEeeCCCcEEEEEcccCcCCC---CCCccccccce-----EEeccccccCccccEeEEE---EeecCCcEEEE
Q 013274           53 LTEERYLLSGASDSSVAVYDVQRATDYE---GGGHIAKHRSV-----FVVDKQHEHGHKYAISSAI---WYPVDTGLFVT  121 (446)
Q Consensus        53 ~~~~~~l~s~s~Dg~i~lWd~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~gh~~~V~~~~---~~~~~~~~l~s  121 (446)
                      |+...++|....||.+++||..+++...   +..++.+ .++     +.....     ...+.+..   -...+...++=
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~-t~~~~~w~L~~~~s-----~~k~~~~~~~~~~s~~t~~lvl   75 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSG-TCTYTKWGLSADYS-----PMKWLSLEKAKKASLDTSMLVL   75 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccC-cceeEEEEEEeccc-----hHHHHhHHHHhhccCCceEEEe
Confidence            4456799999999999999987765321   1111100 000     000000     00000000   01124456777


Q ss_pred             EeCCCeEEEEECCCCeeeEEEecC---CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEE
Q 013274          122 GSYDHYVKVWDTNCTRVVMNFKMP---GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEW  198 (446)
Q Consensus       122 ~s~D~~i~iWd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~  198 (446)
                      |-..|.|.++++..++...++...   +.+..+.+..   ..-.|.+++.|..+..|+......+......+..+.++..
T Consensus        76 gt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~---~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~i  152 (541)
T KOG4547|consen   76 GTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQ---RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCI  152 (541)
T ss_pred             ecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccc---ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEE
Confidence            788899999999999988877643   3344444332   3346889999999999999999999999999999999999


Q ss_pred             ecCCCeEEEEeeCCCcEEEEEccCCceeE
Q 013274          199 STSSEWILVTGGCDGAIRFWDIRRAGCFR  227 (446)
Q Consensus       199 s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~  227 (446)
                      +|+++ ++++++  ++|++||+.+.+.+.
T Consensus       153 s~D~~-~l~~as--~~ik~~~~~~kevv~  178 (541)
T KOG4547|consen  153 SPDGK-ILLTAS--RQIKVLDIETKEVVI  178 (541)
T ss_pred             cCCCC-EEEecc--ceEEEEEccCceEEE
Confidence            99987 567776  599999998766443

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.03  E-value=4.3e-08  Score=88.34  Aligned_cols=247  Identities=18%  Similarity=0.284  Sum_probs=154.8

Q ss_pred             cEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEec--CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC--
Q 013274          105 AISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM--PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG--  180 (446)
Q Consensus       105 ~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~--  180 (446)
                      .+..++|++. --.+|++..|-.||++|-+. ++...++.  ...+.++++-|....  -|+.|+.. -|.+|.....  
T Consensus       100 dlr~~aWhqH-~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsas--elavgCr~-gIciW~~s~tln  174 (445)
T KOG2139|consen  100 DLRGVAWHQH-IIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSAS--ELAVGCRA-GICIWSDSRTLN  174 (445)
T ss_pred             ceeeEeechh-hhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcc--eeeeeecc-eeEEEEcCcccc
Confidence            4555677662 33578999999999999776 43333332  345778888887654  67777754 4889976421  


Q ss_pred             --c--------e--eeeeeCCCCCeEEEEEecCCCeEEEEeeC-CCcEEEEEccCCceeEEeecccccccCCCcccccce
Q 013274          181 --A--------I--SQTLSGHRDGIMTVEWSTSSEWILVTGGC-DGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKV  247 (446)
Q Consensus       181 --~--------~--~~~l~~h~~~v~sv~~s~~~~~~l~S~s~-Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (446)
                        .        .  +..-+|| .+|+++.|.+++. .+++++- |..|+|||..++.+...+                  
T Consensus       175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt-~l~tAS~gsssi~iWdpdtg~~~pL~------------------  234 (445)
T KOG2139|consen  175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT-ILVTASFGSSSIMIWDPDTGQKIPLI------------------  234 (445)
T ss_pred             cccccccccccchhheeCCCC-ceeeEEEEcCCCC-EEeecccCcceEEEEcCCCCCccccc------------------
Confidence              1        1  1122455 6899999999987 4677774 678999998875432110                  


Q ss_pred             eeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEe
Q 013274          248 SISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSA  327 (446)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sg  327 (446)
                                                                               . -.-+.++-|.|||||.+|..+
T Consensus       235 ---------------------------------------------------------~-~glgg~slLkwSPdgd~lfaA  256 (445)
T KOG2139|consen  235 ---------------------------------------------------------P-KGLGGFSLLKWSPDGDVLFAA  256 (445)
T ss_pred             ---------------------------------------------------------c-cCCCceeeEEEcCCCCEEEEe
Confidence                                                                     0 002347889999999999999


Q ss_pred             ecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeec-Cc--------------eEEEe
Q 013274          328 GSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWS-GK--------------TCLTF  392 (446)
Q Consensus       328 s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~--------------~~~~l  392 (446)
                      +-|+..++|+.......    +.-....+.....+.+|++..+...+...-+++.+.- ++              +...|
T Consensus       257 t~davfrlw~e~q~wt~----erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL  332 (445)
T KOG2139|consen  257 TCDAVFRLWQENQSWTK----ERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADL  332 (445)
T ss_pred             cccceeeeehhccccee----cceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccc
Confidence            99999999965432111    1111223345557788888887777666555554421 10              01111


Q ss_pred             ------cc---cccceEEEEEcCCCCEEEEeeCC--------CcEEEeCCCCC-----CCCCcCCCcc
Q 013274          393 ------RG---HYEYVNCCCFSSQDQELYTGGND--------RQILVWCPSRH-----ISDGVDAGPM  438 (446)
Q Consensus       393 ------~g---H~~~v~~~~fSpd~~~lvtgs~D--------~~v~vW~~~~~-----~~~~~~~~~~  438 (446)
                            .+   --+++.+++|-|.|.+||.-=..        ..|.+|+....     ..+|.+.|.+
T Consensus       333 ~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~  400 (445)
T KOG2139|consen  333 QEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEY  400 (445)
T ss_pred             hhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCC
Confidence                  11   13678899999999999853222        23566665433     1345666654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.03  E-value=1.3e-07  Score=93.10  Aligned_cols=216  Identities=13%  Similarity=0.102  Sum_probs=126.8

Q ss_pred             CCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCC---CcEEEEeCCCCceeeeeeCCCCCeEEEEEecC
Q 013274          125 DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTED---VQVRLCDIASGAISQTLSGHRDGIMTVEWSTS  201 (446)
Q Consensus       125 D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d---~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~  201 (446)
                      ...|.++|........-......+....+++++   ..++..+.+   ..|++||+.++... .+..+.+.+.++.|+|+
T Consensus       169 ~~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg---~~la~~~~~~~~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~spD  244 (417)
T TIGR02800       169 RYELQVADYDGANPQTITRSREPILSPAWSPDG---QKLAYVSFESGKPEIYVQDLATGQRE-KVASFPGMNGAPAFSPD  244 (417)
T ss_pred             cceEEEEcCCCCCCEEeecCCCceecccCCCCC---CEEEEEEcCCCCcEEEEEECCCCCEE-EeecCCCCccceEECCC
Confidence            346888887644433322333345566677653   355554432   47999999988643 33445566778999999


Q ss_pred             CCeEEEEeeCCC--cEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeec
Q 013274          202 SEWILVTGGCDG--AIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQS  279 (446)
Q Consensus       202 ~~~~l~S~s~Dg--~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (446)
                      ++.++++.+.++  .|.+||+.++.... +                                                  
T Consensus       245 g~~l~~~~~~~~~~~i~~~d~~~~~~~~-l--------------------------------------------------  273 (417)
T TIGR02800       245 GSKLAVSLSKDGNPDIYVMDLDGKQLTR-L--------------------------------------------------  273 (417)
T ss_pred             CCEEEEEECCCCCccEEEEECCCCCEEE-C--------------------------------------------------
Confidence            987666666555  47777775432100 0                                                  


Q ss_pred             ccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeec-CC--cEEEEecCcCceeeeeeeEEEeecC
Q 013274          280 SVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS-DS--RIRLWDVESGRNTLVNFETVRLQTS  356 (446)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~-D~--~i~lWd~~~~~~~~~~~~~~~~~~~  356 (446)
                                                ..+.+......|+|||++|+..+. ++  .|.++|+.+++...     +.....
T Consensus       274 --------------------------~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-----l~~~~~  322 (417)
T TIGR02800       274 --------------------------TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-----LTFRGG  322 (417)
T ss_pred             --------------------------CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-----eecCCC
Confidence                                      001111234578999998876554 33  57777877654321     111222


Q ss_pred             CCeEEEEcCCCcEEEEeCCC----ceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCc---EEEeCCCCC
Q 013274          357 KPIQLATTQDPAVVFVPCMT----AVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQ---ILVWCPSRH  428 (446)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~----~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~---v~vW~~~~~  428 (446)
                      ....+.+++++..++.....    .+.++|+.++.. ..+..+ ......+|+||+++|+..+.++.   +.+.+.+..
T Consensus       323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~  399 (417)
T TIGR02800       323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGR  399 (417)
T ss_pred             CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCc
Confidence            34456788888776665432    577788776543 333322 23456689999999987776543   444455543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.02  E-value=2.1e-09  Score=101.44  Aligned_cols=174  Identities=18%  Similarity=0.246  Sum_probs=116.5

Q ss_pred             eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (446)
Q Consensus        39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~  118 (446)
                      +.||+..|..++.- ++++-++|+|.|++|++|.++..-+..     ....+     +.+.+.|+..|.++-+.. +...
T Consensus       731 f~GH~~~iRai~Ai-dNENSFiSASkDKTVKLWSik~EgD~~-----~tsaC-----QfTY~aHkk~i~~igfL~-~lr~  798 (1034)
T KOG4190|consen  731 FTGHQEKIRAIAAI-DNENSFISASKDKTVKLWSIKPEGDEI-----GTSAC-----QFTYQAHKKPIHDIGFLA-DLRS  798 (1034)
T ss_pred             ccCcHHHhHHHHhc-ccccceeeccCCceEEEEEeccccCcc-----cccee-----eeEhhhccCcccceeeee-ccce
Confidence            67999999998764 456678899999999999986532211     11111     123457999999888765 3344


Q ss_pred             EEEEeCCCeEEEEECCCCeeeEEEe---cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeee-----eCCC
Q 013274          119 FVTGSYDHYVKVWDTNCTRVVMNFK---MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL-----SGHR  190 (446)
Q Consensus       119 l~s~s~D~~i~iWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l-----~~h~  190 (446)
                      ++  |-|+-|.+||.=-++++....   -.+....+.+.+.-..+.++|.++...+|+++|.+.......+     .+.+
T Consensus       799 i~--ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pn  876 (1034)
T KOG4190|consen  799 IA--SCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPN  876 (1034)
T ss_pred             ee--eccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCc
Confidence            54  567899999965444433221   1111111222222123345555578899999999988755443     4567


Q ss_pred             CCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeE
Q 013274          191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFR  227 (446)
Q Consensus       191 ~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~  227 (446)
                      +.+.+++..|.|++ ++.+=..|.|.+.|.|+++.+.
T Consensus       877 a~~R~iaVa~~GN~-lAa~LSnGci~~LDaR~G~vIN  912 (1034)
T KOG4190|consen  877 ALTRAIAVADKGNK-LAAALSNGCIAILDARNGKVIN  912 (1034)
T ss_pred             hheeEEEeccCcch-hhHHhcCCcEEEEecCCCceec
Confidence            78999999999987 6777788999999999987543

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.01  E-value=2.4e-07  Score=91.58  Aligned_cols=216  Identities=18%  Similarity=0.227  Sum_probs=124.7

Q ss_pred             cccEeEEEEeecCCcEEEEEeCC-C--eEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCc--EEEEeC
Q 013274          103 KYAISSAIWYPVDTGLFVTGSYD-H--YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQ--VRLCDI  177 (446)
Q Consensus       103 ~~~V~~~~~~~~~~~~l~s~s~D-~--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~--v~vwd~  177 (446)
                      ...+.+..|+| |++.|+..+.+ +  .|.+||+.+++........+......++|++.  .++++.+.++.  |+++|+
T Consensus       217 ~~~~~~p~wSP-DG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~--~La~~~~~~g~~~Iy~~dl  293 (448)
T PRK04792        217 PEPLMSPAWSP-DGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGK--KLALVLSKDGQPEIYVVDI  293 (448)
T ss_pred             CCcccCceECC-CCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCC--EEEEEEeCCCCeEEEEEEC
Confidence            33455667877 77777765543 3  58888998876533223334444556777532  34445556664  888899


Q ss_pred             CCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEE--EccCCceeEEeecccccccCCCcccccceeecccccc
Q 013274          178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFW--DIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSA  255 (446)
Q Consensus       178 ~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iW--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (446)
                      ++++. ..+..+........|+|++++++++...++...+|  |+.+++..+..                          
T Consensus       294 ~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt--------------------------  346 (448)
T PRK04792        294 ATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT--------------------------  346 (448)
T ss_pred             CCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe--------------------------
Confidence            88764 44555656667889999999876666555554554  44332210000                          


Q ss_pred             CCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeec-CCc--
Q 013274          256 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS-DSR--  332 (446)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~-D~~--  332 (446)
                                                                       ..++  .....+|+|||++|+-.+. ++.  
T Consensus       347 -------------------------------------------------~~g~--~~~~~~~SpDG~~l~~~~~~~g~~~  375 (448)
T PRK04792        347 -------------------------------------------------FEGE--QNLGGSITPDGRSMIMVNRTNGKFN  375 (448)
T ss_pred             -------------------------------------------------cCCC--CCcCeeECCCCCEEEEEEecCCceE
Confidence                                                             0000  1123479999998766544 443  


Q ss_pred             EEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-C---ceEEEEeecCceEEEecccccceEEEEEcC
Q 013274          333 IRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-T---AVKAFDIWSGKTCLTFRGHYEYVNCCCFSS  406 (446)
Q Consensus       333 i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~d~~~~~~~~~l~gH~~~v~~~~fSp  406 (446)
                      |.++|+.++.....  ..    ........++|++..++.... .   .+.+++. +++....+..+.+.+...+|||
T Consensus       376 I~~~dl~~g~~~~l--t~----~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        376 IARQDLETGAMQVL--TS----TRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             EEEEECCCCCeEEc--cC----CCCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence            44567776643221  10    111123467888877655432 1   2344454 5666677777777778888887

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.00  E-value=8.3e-07  Score=96.04  Aligned_cols=255  Identities=15%  Similarity=0.208  Sum_probs=152.5

Q ss_pred             EEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCC---------------ceEEeeeccCCCCceEEEEeeCCCcEE
Q 013274          109 AIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPG---------------KVYRTAMSPLAASHMLIAAGTEDVQVR  173 (446)
Q Consensus       109 ~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~lasgs~d~~v~  173 (446)
                      +++.+.++.++++-+..+.|++||... ..+..+...+               ....+++.+.  ++.++++-..++.|+
T Consensus       573 vavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~--gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        573 LAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAK--KNLLYVADTENHALR  649 (1057)
T ss_pred             EEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCC--CCEEEEEeCCCceEE
Confidence            444444566788888889999999864 4333332211               1233444332  233445555567899


Q ss_pred             EEeCCCCceeeeeeCC-----------------CCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccc
Q 013274          174 LCDIASGAISQTLSGH-----------------RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQL  236 (446)
Q Consensus       174 vwd~~~~~~~~~l~~h-----------------~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~  236 (446)
                      ++|+.++. +.++.+-                 -..-..|+|+|++..++++.+.++.|++||..++... .+...... 
T Consensus       650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~-  726 (1057)
T PLN02919        650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYE-  726 (1057)
T ss_pred             EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcc-
Confidence            99987764 3333210                 0123578999965667788888999999998765321 11100000 


Q ss_pred             cCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEE
Q 013274          237 GRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLK  316 (446)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  316 (446)
                                                      ...+               +..             ...........|+
T Consensus       727 --------------------------------~~~~---------------g~~-------------~~~~~~~~P~GIa  746 (1057)
T PLN02919        727 --------------------------------RNLN---------------GSS-------------GTSTSFAQPSGIS  746 (1057)
T ss_pred             --------------------------------ccCC---------------CCc-------------cccccccCccEEE
Confidence                                            0000               000             0000112356799


Q ss_pred             EccCCC-EEEEeecCCcEEEEecCcCceeeeee------eE-EE----------eecCCCeEEEEcCCCcEEEEeC-CCc
Q 013274          317 VTEDGM-YLLSAGSDSRIRLWDVESGRNTLVNF------ET-VR----------LQTSKPIQLATTQDPAVVFVPC-MTA  377 (446)
Q Consensus       317 fs~dg~-~l~sgs~D~~i~lWd~~~~~~~~~~~------~~-~~----------~~~~~~~~~~~~~~~~~~~~~~-~~~  377 (446)
                      |+|+|. .+++.+.+++|++||+.++......-      .. ..          .....+..+++.+++.+.++.. ...
T Consensus       747 vspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~r  826 (1057)
T PLN02919        747 LSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHK  826 (1057)
T ss_pred             EeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCE
Confidence            999997 55677888999999998754321100      00 00          0012345677788877655544 357


Q ss_pred             eEEEEeecCceEEEe-------------cccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCC
Q 013274          378 VKAFDIWSGKTCLTF-------------RGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI  429 (446)
Q Consensus       378 ~~~~d~~~~~~~~~l-------------~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~  429 (446)
                      +++||..++......             .++-.....+++++||+++++-+.++.|++|++++..
T Consensus       827 IrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        827 IKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             EEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence            999998776543221             2233467899999999999999999999999998764

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.99  E-value=1.4e-08  Score=90.90  Aligned_cols=247  Identities=18%  Similarity=0.287  Sum_probs=154.2

Q ss_pred             cCccccEeEEEEeecCCcEEEEEeCCCeEEEEE-CCCCeeeEE--EecCCceEEeeeccCCCCceEEEEeeCCCcEEEEe
Q 013274          100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWD-TNCTRVVMN--FKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCD  176 (446)
Q Consensus       100 ~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd  176 (446)
                      .||...|++....|. ..-+.+.+.|.++|||- .+.++.-..  ..++..+....+...   ...|..|-.+|++.-+.
T Consensus        21 eG~~d~vn~~~l~~~-e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e---~~~L~vg~~ngtvtefs   96 (404)
T KOG1409|consen   21 EGSQDDVNAAILIPK-EEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSE---SRRLYVGQDNGTVTEFA   96 (404)
T ss_pred             cCchhhhhhheeccC-CCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeecc---ceEEEEEEecceEEEEE
Confidence            588888888887774 44788999999999994 333332211  223444544454442   34688888889988886


Q ss_pred             CC----CCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccc
Q 013274          177 IA----SGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKS  252 (446)
Q Consensus       177 ~~----~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (446)
                      +.    .-..++....|...|..+.|+...+++ ++.+.|..+.---.+.+..+..+.   ...        ...+....
T Consensus        97 ~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V-~s~~~dk~~~~hc~e~~~~lg~Y~---~~~--------~~t~~~~d  164 (404)
T KOG1409|consen   97 LSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWV-LSTGKDKQFAWHCTESGNRLGGYN---FET--------PASALQFD  164 (404)
T ss_pred             hhhhhhhcchhhhhhhhhcceeeEEecCCceeE-EEeccccceEEEeeccCCcccceE---eec--------cCCCCcee
Confidence            53    334566677899999999999888875 688887765522222221111100   000        00000000


Q ss_pred             cccCCCCCcCCCCccccccCCCceeecccceeecCCcc-ccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCC
Q 013274          253 LSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSV-RQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS  331 (446)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~  331 (446)
                      +.                       ....+..  .+.+ ..++.+..........+|.+.+.+++|.+....|.||..|.
T Consensus       165 ~~-----------------------~~fvGd~--~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~  219 (404)
T KOG1409|consen  165 AL-----------------------YAFVGDH--SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDH  219 (404)
T ss_pred             eE-----------------------EEEeccc--ccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccC
Confidence            00                       0000000  0000 00111111222234568999999999999999999999999


Q ss_pred             cEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEE
Q 013274          332 RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQEL  411 (446)
Q Consensus       332 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~l  411 (446)
                      .+-+||+.-.+-                                            ....+.+|.+.|..+..-+--+.|
T Consensus       220 ~vi~wdigg~~g--------------------------------------------~~~el~gh~~kV~~l~~~~~t~~l  255 (404)
T KOG1409|consen  220 SVIMWDIGGRKG--------------------------------------------TAYELQGHNDKVQALSYAQHTRQL  255 (404)
T ss_pred             ceEEEeccCCcc--------------------------------------------eeeeeccchhhhhhhhhhhhheee
Confidence            999999875321                                            113557888888888888888999


Q ss_pred             EEeeCCCcEEEeCCCCCCCC
Q 013274          412 YTGGNDRQILVWCPSRHISD  431 (446)
Q Consensus       412 vtgs~D~~v~vW~~~~~~~~  431 (446)
                      .|++.|+.|.+|+.+-.+++
T Consensus       256 ~S~~edg~i~~w~mn~~r~e  275 (404)
T KOG1409|consen  256 ISCGEDGGIVVWNMNVKRVE  275 (404)
T ss_pred             eeccCCCeEEEEeccceeec
Confidence            99999999999999865433

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=98.99  E-value=4.6e-08  Score=88.14  Aligned_cols=194  Identities=20%  Similarity=0.235  Sum_probs=123.0

Q ss_pred             EEEEeeCCCcEEEEeCCCCceeeeeeC-CCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCC
Q 013274          162 LIAAGTEDVQVRLCDIASGAISQTLSG-HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRP  240 (446)
Q Consensus       162 ~lasgs~d~~v~vwd~~~~~~~~~l~~-h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~  240 (446)
                      -+|++..|-.|++||-.. ++...++. .+..|++++|-|.+...|+.|+. +-|.||..........      .+    
T Consensus       112 ~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r------~~----  179 (445)
T KOG2139|consen  112 AFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANR------NI----  179 (445)
T ss_pred             hhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccccccc------cc----
Confidence            467788899999999776 55555553 46689999999988766666665 5699997642110000      00    


Q ss_pred             cccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccC
Q 013274          241 PLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED  320 (446)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~d  320 (446)
                               . ..+.                              ..+.            .-...+| .+|++|.+.+|
T Consensus       180 ---------~-~~s~------------------------------~~~q------------vl~~pgh-~pVtsmqwn~d  206 (445)
T KOG2139|consen  180 ---------R-MMST------------------------------HHLQ------------VLQDPGH-NPVTSMQWNED  206 (445)
T ss_pred             ---------c-cccc------------------------------cchh------------heeCCCC-ceeeEEEEcCC
Confidence                     0 0000                              0000            0012355 57999999999


Q ss_pred             CCEEEEeec-CCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCc-eEEEEeecCceEEEecccccc
Q 013274          321 GMYLLSAGS-DSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTA-VKAFDIWSGKTCLTFRGHYEY  398 (446)
Q Consensus       321 g~~l~sgs~-D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~l~gH~~~  398 (446)
                      |..|++++- |..|.|||+.++....  +.  .+..+....+..+||+..++.+.-++ .++|....-.......--.+.
T Consensus       207 gt~l~tAS~gsssi~iWdpdtg~~~p--L~--~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgr  282 (445)
T KOG2139|consen  207 GTILVTASFGSSSIMIWDPDTGQKIP--LI--PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGR  282 (445)
T ss_pred             CCEEeecccCcceEEEEcCCCCCccc--cc--ccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCc
Confidence            999998865 5679999999875321  11  23344555788999999999886554 478854332222223333448


Q ss_pred             eEEEEEcCCCCEEE-EeeCCCcEEEeCCC
Q 013274          399 VNCCCFSSQDQELY-TGGNDRQILVWCPS  426 (446)
Q Consensus       399 v~~~~fSpd~~~lv-tgs~D~~v~vW~~~  426 (446)
                      |....|+|+|+.|. +++..  -+++.+.
T Consensus       283 vqtacWspcGsfLLf~~sgs--p~lysl~  309 (445)
T KOG2139|consen  283 VQTACWSPCGSFLLFACSGS--PRLYSLT  309 (445)
T ss_pred             eeeeeecCCCCEEEEEEcCC--ceEEEEe
Confidence            99999999998865 55433  3555554

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.98  E-value=1e-09  Score=68.47  Aligned_cols=39  Identities=38%  Similarity=0.614  Sum_probs=36.5

Q ss_pred             CceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeC
Q 013274          386 GKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC  424 (446)
Q Consensus       386 ~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~  424 (446)
                      ++++.+|.+|.+.|++|+|+|++++|+|||.|++|++|+
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            356789999999999999999999999999999999996

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=98.98  E-value=3e-08  Score=100.44  Aligned_cols=189  Identities=19%  Similarity=0.255  Sum_probs=133.6

Q ss_pred             CCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECC
Q 013274           55 EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTN  134 (446)
Q Consensus        55 ~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~  134 (446)
                      ++..++.+..+..+.+||..........  ....+..+..           . .+.....+.-++++|+--+.|.+|+..
T Consensus        98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i--~~~er~~l~~-----------~-~~~g~s~~~~~i~~gsv~~~iivW~~~  163 (967)
T KOG0974|consen   98 ENKKIALVTSRNSLLIRDSKNSSVLSKI--QSDERCTLYS-----------S-LIIGDSAEELYIASGSVFGEIIVWKPH  163 (967)
T ss_pred             hcceEEEEEcCceEEEEecccCceehhc--CCCceEEEEe-----------E-EEEeccCcEEEEEeccccccEEEEecc
Confidence            4567889999999999998754322110  0011111100           0 111233355688999999999999976


Q ss_pred             C-CeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceee-eeeCCCCCeEEEEEecCCCeEEEEeeCC
Q 013274          135 C-TRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ-TLSGHRDGIMTVEWSTSSEWILVTGGCD  212 (446)
Q Consensus       135 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~-~l~~h~~~v~sv~~s~~~~~~l~S~s~D  212 (446)
                      . ..+.+...+.|.++++.++.+   ..++++.|.|.++++|++++++... ..-+|++.|+.+.|.|+   .++|+++|
T Consensus       164 ~dn~p~~l~GHeG~iF~i~~s~d---g~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n---~i~t~ged  237 (967)
T KOG0974|consen  164 EDNKPIRLKGHEGSIFSIVTSLD---GRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN---RIITVGED  237 (967)
T ss_pred             ccCCcceecccCCceEEEEEccC---CcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc---eeEEeccc
Confidence            2 233444456677888888764   4589999999999999999997665 67799999999999987   37899999


Q ss_pred             CcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCcccc
Q 013274          213 GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQ  292 (446)
Q Consensus       213 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (446)
                      -+.++|+.... .+.                                                                 
T Consensus       238 ctcrvW~~~~~-~l~-----------------------------------------------------------------  251 (967)
T KOG0974|consen  238 CTCRVWGVNGT-QLE-----------------------------------------------------------------  251 (967)
T ss_pred             eEEEEEecccc-eeh-----------------------------------------------------------------
Confidence            99999964321 000                                                                 


Q ss_pred             ccCCCccccccccccccc-CeEEEEEccCCCEEEEeecCCcEEEEecCc
Q 013274          293 RLHPGMLSSQDRATAHYG-AVTGLKVTEDGMYLLSAGSDSRIRLWDVES  340 (446)
Q Consensus       293 ~~~~~~~~~~~~~~~h~~-~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~  340 (446)
                                 ...+|.+ .|..++..++...++|++.|+.+++|++..
T Consensus       252 -----------~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  252 -----------VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             -----------hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence                       0112332 378889999999999999999999999864

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.97  E-value=2e-07  Score=81.93  Aligned_cols=234  Identities=16%  Similarity=0.220  Sum_probs=145.2

Q ss_pred             CCc-EEEEEeCCCeEEEEECCCCeeeEEEe-cCCc------eEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCcee--e
Q 013274          115 DTG-LFVTGSYDHYVKVWDTNCTRVVMNFK-MPGK------VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAIS--Q  184 (446)
Q Consensus       115 ~~~-~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~--~  184 (446)
                      ++. .++-+-.+|.|.++..........+. +.+.      ..++.+.+.   ..-++++-.+|.+.+.+.....+.  +
T Consensus        83 ~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~---~~~i~vs~s~G~~~~v~~t~~~le~vq  159 (339)
T KOG0280|consen   83 DGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTS---GTKIFVSDSRGSISGVYETEMVLEKVQ  159 (339)
T ss_pred             CccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeecc---CceEEEEcCCCcEEEEecceeeeeecc
Confidence            444 55667778889988765333222222 1111      122333332   334778888899987776655443  4


Q ss_pred             eeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCC
Q 013274          185 TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPR  264 (446)
Q Consensus       185 ~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (446)
                      ..+.|.-+.+...|+...+.++.||+.|+.+.-||+|..+.+ .+                                   
T Consensus       160 ~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~-i~-----------------------------------  203 (339)
T KOG0280|consen  160 TWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF-IW-----------------------------------  203 (339)
T ss_pred             cccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcce-ee-----------------------------------
Confidence            789999999999999888888899999999999999843210 00                                   


Q ss_pred             CccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEcc-CCCEEEEeecCCcEEEEecCc-Cc
Q 013274          265 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE-DGMYLLSAGSDSRIRLWDVES-GR  342 (446)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~sgs~D~~i~lWd~~~-~~  342 (446)
                                                            .....|..-|.++.-+| .+.+++||+-|..|++||.++ ++
T Consensus       204 --------------------------------------~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k  245 (339)
T KOG0280|consen  204 --------------------------------------HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK  245 (339)
T ss_pred             --------------------------------------ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC
Confidence                                                  00124666688877764 688999999999999999885 33


Q ss_pred             eeeeeeeEEEeecCCCeEEEEcCCCc-EEEEeC-CCceEEEEeecC--c---eEEEecccccceEEEEEcCCCCEEEEee
Q 013274          343 NTLVNFETVRLQTSKPIQLATTQDPA-VVFVPC-MTAVKAFDIWSG--K---TCLTFRGHYEYVNCCCFSSQDQELYTGG  415 (446)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~d~~~~--~---~~~~l~gH~~~v~~~~fSpd~~~lvtgs  415 (446)
                      +..   +.  ...+.+-++.-.|.-. .++.+| -+..++.++.++  +   .+.....|.+-...-.|..-...|+|||
T Consensus       246 Pl~---~~--~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCs  320 (339)
T KOG0280|consen  246 PLF---KA--KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCS  320 (339)
T ss_pred             ccc---cC--ccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeee
Confidence            211   11  1123344444444322 223333 356777777554  2   3445566766666666643346799987


Q ss_pred             C-CCcEE-EeCCCCCCC
Q 013274          416 N-DRQIL-VWCPSRHIS  430 (446)
Q Consensus       416 ~-D~~v~-vW~~~~~~~  430 (446)
                      - |+.++ +|-.-+..+
T Consensus       321 FYDk~~~~~Wl~~t~~~  337 (339)
T KOG0280|consen  321 FYDKKIRQLWLHITGEP  337 (339)
T ss_pred             ccccceeeeeeeccCCc
Confidence            5 77755 997665544

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.97  E-value=6.5e-07  Score=88.56  Aligned_cols=215  Identities=15%  Similarity=0.127  Sum_probs=123.4

Q ss_pred             eEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCC---CcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCC
Q 013274          127 YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTED---VQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSE  203 (446)
Q Consensus       127 ~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d---~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~  203 (446)
                      .|.++|.+.+...........+....++|++   ..|+..+.+   ..|.+||+++++... +....+.+.+..|+|+++
T Consensus       180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG---~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~  255 (430)
T PRK00178        180 TLQRSDYDGARAVTLLQSREPILSPRWSPDG---KRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGS  255 (430)
T ss_pred             EEEEECCCCCCceEEecCCCceeeeeECCCC---CEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCC
Confidence            4778888755443323334455666777754   345444322   469999999886432 333334456789999999


Q ss_pred             eEEEEeeCCC--cEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeeccc
Q 013274          204 WILVTGGCDG--AIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV  281 (446)
Q Consensus       204 ~~l~S~s~Dg--~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (446)
                      .++++.+.+|  .|.+||+.++...+ +                                                    
T Consensus       256 ~la~~~~~~g~~~Iy~~d~~~~~~~~-l----------------------------------------------------  282 (430)
T PRK00178        256 KLAFVLSKDGNPEIYVMDLASRQLSR-V----------------------------------------------------  282 (430)
T ss_pred             EEEEEEccCCCceEEEEECCCCCeEE-c----------------------------------------------------
Confidence            7666666665  47777776542110 0                                                    


Q ss_pred             ceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeec-CC--cEEEEecCcCceeeeeeeEEEeecCCC
Q 013274          282 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS-DS--RIRLWDVESGRNTLVNFETVRLQTSKP  358 (446)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~-D~--~i~lWd~~~~~~~~~~~~~~~~~~~~~  358 (446)
                                              ..+........|+|||+.|+-.+. ++  .|.++|+.+++.....     ......
T Consensus       283 ------------------------t~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-----~~~~~~  333 (430)
T PRK00178        283 ------------------------TNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-----FVGNYN  333 (430)
T ss_pred             ------------------------ccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-----cCCCCc
Confidence                                    001111334579999987765443 33  4777787776532221     111222


Q ss_pred             eEEEEcCCCcEEEEeCC----CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCC-Cc--EEEeCCCCCC
Q 013274          359 IQLATTQDPAVVFVPCM----TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND-RQ--ILVWCPSRHI  429 (446)
Q Consensus       359 ~~~~~~~~~~~~~~~~~----~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D-~~--v~vW~~~~~~  429 (446)
                      ....++|++..++....    ..+.++|+.+++... +. +........|||||++|+-.+.+ +.  |.+.+.++..
T Consensus       334 ~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~  409 (430)
T PRK00178        334 ARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRV  409 (430)
T ss_pred             cceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-cc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence            34567888877655432    246678887776432 22 22223356899999998865543 33  5555665443

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.94  E-value=1.8e-05  Score=75.72  Aligned_cols=273  Identities=18%  Similarity=0.246  Sum_probs=155.5

Q ss_pred             eeEEEeecCCCCEEEEeeC----CCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEE
Q 013274           46 INSLQVDLTEERYLLSGAS----DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT  121 (446)
Q Consensus        46 v~~l~~s~~~~~~l~s~s~----Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s  121 (446)
                      -.-|++++ ++++|-+...    ++.|..|++....     +.+....      .....|.  ..+.+... +++++|++
T Consensus        39 Ps~l~~~~-~~~~LY~~~e~~~~~g~v~~~~i~~~~-----g~L~~~~------~~~~~g~--~p~~i~~~-~~g~~l~v  103 (345)
T PF10282_consen   39 PSWLAVSP-DGRRLYVVNEGSGDSGGVSSYRIDPDT-----GTLTLLN------SVPSGGS--SPCHIAVD-PDGRFLYV  103 (345)
T ss_dssp             ECCEEE-T-TSSEEEEEETTSSTTTEEEEEEEETTT-----TEEEEEE------EEEESSS--CEEEEEEC-TTSSEEEE
T ss_pred             CceEEEEe-CCCEEEEEEccccCCCCEEEEEECCCc-----ceeEEee------eeccCCC--CcEEEEEe-cCCCEEEE
Confidence            35578886 4566666655    5789999886531     0110000      0000111  12233444 47788887


Q ss_pred             EeC-CCeEEEEECCC-CeeeEE---Ee-----------cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc--ee
Q 013274          122 GSY-DHYVKVWDTNC-TRVVMN---FK-----------MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA--IS  183 (446)
Q Consensus       122 ~s~-D~~i~iWd~~~-~~~~~~---~~-----------~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~--~~  183 (446)
                      +.+ +++|.++++.. +.+...   +.           ...+.+.+.+.|+.  ..++++--....|.+|+++...  +.
T Consensus       104 any~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg--~~v~v~dlG~D~v~~~~~~~~~~~l~  181 (345)
T PF10282_consen  104 ANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG--RFVYVPDLGADRVYVYDIDDDTGKLT  181 (345)
T ss_dssp             EETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS--SEEEEEETTTTEEEEEEE-TTS-TEE
T ss_pred             EEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCC--CEEEEEecCCCEEEEEEEeCCCceEE
Confidence            775 89999999976 443222   21           12346778888753  2445554445689999997764  31


Q ss_pred             --eeee-CCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccC-CceeEEeecccccccCCCcccccceeeccccccCCCC
Q 013274          184 --QTLS-GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR-AGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNS  259 (446)
Q Consensus       184 --~~l~-~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (446)
                        ..+. .....-..+.|+|+++++.+..-.+++|.++++.. ...+..+....                          
T Consensus       182 ~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~--------------------------  235 (345)
T PF10282_consen  182 PVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIS--------------------------  235 (345)
T ss_dssp             EEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE--------------------------
T ss_pred             EeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEee--------------------------
Confidence              2222 33455689999999998778888889999999872 11111111000                          


Q ss_pred             CcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEE-EEeecCCcEEEEec
Q 013274          260 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL-LSAGSDSRIRLWDV  338 (446)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l-~sgs~D~~i~lWd~  338 (446)
                                             .++.          .       ..+ ......|+++|||++| ++.....+|.+|++
T Consensus       236 -----------------------~~~~----------~-------~~~-~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~  274 (345)
T PF10282_consen  236 -----------------------TLPE----------G-------FTG-ENAPAEIAISPDGRFLYVSNRGSNSISVFDL  274 (345)
T ss_dssp             -----------------------SCET----------T-------SCS-SSSEEEEEE-TTSSEEEEEECTTTEEEEEEE
T ss_pred             -----------------------eccc----------c-------ccc-cCCceeEEEecCCCEEEEEeccCCEEEEEEE
Confidence                                   0000          0       000 1136778999999976 55567788999999


Q ss_pred             Cc--CceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC--CceEEEEee--cCceEEEec-ccccceEEEEE
Q 013274          339 ES--GRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAFDIW--SGKTCLTFR-GHYEYVNCCCF  404 (446)
Q Consensus       339 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~--~~~~~~~l~-gH~~~v~~~~f  404 (446)
                      ..  ++..  ...........+-.+++++++..+++++.  +.+.+|++.  +|.+...-. -......||.|
T Consensus       275 d~~~g~l~--~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  275 DPATGTLT--LVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF  345 (345)
T ss_dssp             CTTTTTEE--EEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred             ecCCCceE--EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence            43  3322  22233322344677899999999998754  578888874  455433221 23455677776

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.92  E-value=1.4e-06  Score=86.28  Aligned_cols=215  Identities=14%  Similarity=0.117  Sum_probs=118.4

Q ss_pred             eEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEee-CC--CcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCC
Q 013274          127 YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGT-ED--VQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSE  203 (446)
Q Consensus       127 ~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs-~d--~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~  203 (446)
                      .|.++|.+......-......+....++|++   ..|+..+ .+  ..|++||+.+++.. .+....+...+.+|+|+++
T Consensus       199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG---~~La~~s~~~g~~~L~~~dl~tg~~~-~lt~~~g~~~~~~wSPDG~  274 (448)
T PRK04792        199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDG---RKLAYVSFENRKAEIFVQDIYTQVRE-KVTSFPGINGAPRFSPDGK  274 (448)
T ss_pred             EEEEEeCCCCCceEeecCCCcccCceECCCC---CEEEEEEecCCCcEEEEEECCCCCeE-EecCCCCCcCCeeECCCCC
Confidence            6777787654332222333445566777754   3444433 23  36899999887642 2222223345789999999


Q ss_pred             eEEEEeeCCCc--EEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeeccc
Q 013274          204 WILVTGGCDGA--IRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV  281 (446)
Q Consensus       204 ~~l~S~s~Dg~--I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (446)
                      .++++.+.+|.  |.++|+.++...+ +                                                    
T Consensus       275 ~La~~~~~~g~~~Iy~~dl~tg~~~~-l----------------------------------------------------  301 (448)
T PRK04792        275 KLALVLSKDGQPEIYVVDIATKALTR-I----------------------------------------------------  301 (448)
T ss_pred             EEEEEEeCCCCeEEEEEECCCCCeEE-C----------------------------------------------------
Confidence            87667777776  5555654432100 0                                                    


Q ss_pred             ceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeec-CCc--EEEEecCcCceeeeeeeEEEeecCCC
Q 013274          282 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS-DSR--IRLWDVESGRNTLVNFETVRLQTSKP  358 (446)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~-D~~--i~lWd~~~~~~~~~~~~~~~~~~~~~  358 (446)
                                              ..+.......+|+|||++|+..+. ++.  |.++|+.+++.....     ......
T Consensus       302 ------------------------t~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-----~~g~~~  352 (448)
T PRK04792        302 ------------------------TRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-----FEGEQN  352 (448)
T ss_pred             ------------------------ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-----cCCCCC
Confidence                                    011112345679999998765543 344  556677666432211     111222


Q ss_pred             eEEEEcCCCcEEEEeCC--C--ceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeC-CCc--EEEeCCCCCC
Q 013274          359 IQLATTQDPAVVFVPCM--T--AVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGN-DRQ--ILVWCPSRHI  429 (446)
Q Consensus       359 ~~~~~~~~~~~~~~~~~--~--~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~-D~~--v~vW~~~~~~  429 (446)
                      ....++|++..++....  .  .+..+|+.+++.. .+... ......+|+|||++|+-.+. ++.  +.+++.++..
T Consensus       353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~  428 (448)
T PRK04792        353 LGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRF  428 (448)
T ss_pred             cCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence            33578888877655422  2  3445666666542 33222 12234589999999875444 443  5566666543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.91  E-value=6e-07  Score=88.79  Aligned_cols=217  Identities=17%  Similarity=0.167  Sum_probs=125.4

Q ss_pred             ccccEeEEEEeecCCcEEEEEeCC---CeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCC--cEEEEe
Q 013274          102 HKYAISSAIWYPVDTGLFVTGSYD---HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV--QVRLCD  176 (446)
Q Consensus       102 h~~~V~~~~~~~~~~~~l~s~s~D---~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~--~v~vwd  176 (446)
                      +...+....|+| +++.|+..+.+   ..|.+||+.+++........+......++|++.  .++.+.+.++  .|+++|
T Consensus       197 ~~~~~~~p~wSp-DG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~--~la~~~~~~g~~~Iy~~d  273 (430)
T PRK00178        197 SREPILSPRWSP-DGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGS--KLAFVLSKDGNPEIYVMD  273 (430)
T ss_pred             CCCceeeeeECC-CCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCC--EEEEEEccCCCceEEEEE
Confidence            444566778887 77787766644   368899998876544333334444456776532  3433444444  688889


Q ss_pred             CCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCc--EEEEEccCCceeEEeecccccccCCCcccccceeeccccc
Q 013274          177 IASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGA--IRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLS  254 (446)
Q Consensus       177 ~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~--I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (446)
                      ++++.. ..+..+........|+|+++.++.+...+|.  |.++|+.++...+..                         
T Consensus       274 ~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-------------------------  327 (430)
T PRK00178        274 LASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-------------------------  327 (430)
T ss_pred             CCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-------------------------
Confidence            998764 3455566667778999999876666555554  555555433211000                         


Q ss_pred             cCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecC-C--
Q 013274          255 AGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD-S--  331 (446)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D-~--  331 (446)
                                                     .                   .+  .......|+|||++|+-.+.+ +  
T Consensus       328 -------------------------------~-------------------~~--~~~~~~~~Spdg~~i~~~~~~~~~~  355 (430)
T PRK00178        328 -------------------------------F-------------------VG--NYNARPRLSADGKTLVMVHRQDGNF  355 (430)
T ss_pred             -------------------------------c-------------------CC--CCccceEECCCCCEEEEEEccCCce
Confidence                                           0                   00  011235689999988766543 3  


Q ss_pred             cEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC--C--ceEEEEeecCceEEEecccccceEEEEEcC
Q 013274          332 RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM--T--AVKAFDIWSGKTCLTFRGHYEYVNCCCFSS  406 (446)
Q Consensus       332 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~d~~~~~~~~~l~gH~~~v~~~~fSp  406 (446)
                      .|.+||+.++......  .    ........++|++..++....  +  .+.++++ ++.....+..+.+.+...+|||
T Consensus       356 ~l~~~dl~tg~~~~lt--~----~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~ws~  427 (430)
T PRK00178        356 HVAAQDLQRGSVRILT--D----TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSI-NGRVRLPLPTAQGEVREPSWSP  427 (430)
T ss_pred             EEEEEECCCCCEEEcc--C----CCCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence            4788899886532211  1    112223468888887765432  1  2344444 3444445555556666667765

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.88  E-value=1.2e-08  Score=89.47  Aligned_cols=162  Identities=22%  Similarity=0.308  Sum_probs=113.6

Q ss_pred             eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (446)
Q Consensus        39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~  118 (446)
                      .++|.-..+...|+..+.+++-|||.|+.+.-||+.-...               ...++..-|..+|.++..+|+.+.+
T Consensus       161 wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~---------------~i~~n~kvH~~GV~SI~ss~~~~~~  225 (339)
T KOG0280|consen  161 WKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT---------------FIWHNSKVHTSGVVSIYSSPPKPTY  225 (339)
T ss_pred             ccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc---------------eeeecceeeecceEEEecCCCCCce
Confidence            3579999999999877778999999999999999862211               1123345689999999999999999


Q ss_pred             EEEEeCCCeEEEEECCC-CeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc-----eeeeeeCCCCC
Q 013274          119 FVTGSYDHYVKVWDTNC-TRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA-----ISQTLSGHRDG  192 (446)
Q Consensus       119 l~s~s~D~~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~-----~~~~l~~h~~~  192 (446)
                      ++||++|-.|++||+.. ++++..-...|.+.++..+|... +.++++ +.-+-.+|.+.+.+.     .....+.|.+-
T Consensus       226 I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~-~~lL~~-CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl  303 (339)
T KOG0280|consen  226 IATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIF-HRLLAA-CMHNGAKILDSSDKVLEFQIVLPSDKIHDSL  303 (339)
T ss_pred             EEEeccccceeeeehhcccCccccCccccceEEEEecchhh-hHHHHH-HHhcCceEEEecccccchheeeeccccccce
Confidence            99999999999999974 56676666678888888888654 233343 333446777776552     22334556665


Q ss_pred             eEEEEEecCCCeEEEEeeC-CCcEE-EE
Q 013274          193 IMTVEWSTSSEWILVTGGC-DGAIR-FW  218 (446)
Q Consensus       193 v~sv~~s~~~~~~l~S~s~-Dg~I~-iW  218 (446)
                      +..-.|... ..+|+||+. |+.|+ +|
T Consensus       304 ~YG~DWd~~-~~~lATCsFYDk~~~~~W  330 (339)
T KOG0280|consen  304 CYGGDWDSK-DSFLATCSFYDKKIRQLW  330 (339)
T ss_pred             eeccccccc-cceeeeeeccccceeeee
Confidence            555556322 235677663 55544 66

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.87  E-value=8.3e-08  Score=85.97  Aligned_cols=171  Identities=18%  Similarity=0.327  Sum_probs=101.5

Q ss_pred             cceeEEEeecCCC-CEEEEeeCCCcEEEEEcccCcCCC---------CCCccccccceEEec--------c--ccccCcc
Q 013274           44 GSINSLQVDLTEE-RYLLSGASDSSVAVYDVQRATDYE---------GGGHIAKHRSVFVVD--------K--QHEHGHK  103 (446)
Q Consensus        44 ~~v~~l~~s~~~~-~~l~s~s~Dg~i~lWd~~~~~~~~---------~~~~~~~~~~~~~~~--------~--~~~~gh~  103 (446)
                      ..|+.++|..+.+ ..++....|++|++|.+.......         ..+.+...+...+..        .  ....+|.
T Consensus        85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt  164 (433)
T KOG1354|consen   85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT  164 (433)
T ss_pred             hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence            4688888865432 344455689999999985432111         001111111111100        0  1235899


Q ss_pred             ccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEE---e------cCCceEEeeeccCCCCceEEEEeeCCCcEEE
Q 013274          104 YAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNF---K------MPGKVYRTAMSPLAASHMLIAAGTEDVQVRL  174 (446)
Q Consensus       104 ~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~---~------~~~~~~~~~~~~~~~~~~~lasgs~d~~v~v  174 (446)
                      .-|.++.+.+ |...++|+ +|=.|.+|+++-...-.++   .      +..-+.+..|+|..  ..+++.+++.|+|++
T Consensus       165 yhiNSIS~Ns-D~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~--cn~f~YSSSKGtIrL  240 (433)
T KOG1354|consen  165 YHINSISVNS-DKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHH--CNVFVYSSSKGTIRL  240 (433)
T ss_pred             eEeeeeeecC-ccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhH--ccEEEEecCCCcEEE
Confidence            9999988775 67777765 5678999998632211111   1      11224555666643  457888889999999


Q ss_pred             EeCCCCcee----eeeeC------------CCCCeEEEEEecCCCeEEEEeeCC-CcEEEEEcc
Q 013274          175 CDIASGAIS----QTLSG------------HRDGIMTVEWSTSSEWILVTGGCD-GAIRFWDIR  221 (446)
Q Consensus       175 wd~~~~~~~----~~l~~------------h~~~v~sv~~s~~~~~~l~S~s~D-g~I~iWd~~  221 (446)
                      .|++...+.    +.+..            =-..|..|.|+++|+++ +|  .| -+|++||+.
T Consensus       241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryi-ls--RDyltvk~wD~n  301 (433)
T KOG1354|consen  241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYI-LS--RDYLTVKLWDLN  301 (433)
T ss_pred             eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEE-EE--eccceeEEEecc
Confidence            999854321    11111            12347788899999874 43  44 799999984

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.84  E-value=5.4e-09  Score=101.90  Aligned_cols=160  Identities=16%  Similarity=0.347  Sum_probs=105.6

Q ss_pred             ceeEEEeecCC--CCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEE
Q 013274           45 SINSLQVDLTE--ERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG  122 (446)
Q Consensus        45 ~v~~l~~s~~~--~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~  122 (446)
                      .|-.++|++.-  .-.+|+.|.-+ -.+|++.....          +.+    .-..+||..+|+.+.|.+...+.++++
T Consensus        69 ~vad~qws~h~a~~~wiVsts~qk-aiiwnlA~ss~----------~aI----ef~lhghsraitd~n~~~q~pdVlatc  133 (1081)
T KOG0309|consen   69 QVADVQWSPHPAKPYWIVSTSNQK-AIIWNLAKSSS----------NAI----EFVLHGHSRAITDINFNPQHPDVLATC  133 (1081)
T ss_pred             hhcceecccCCCCceeEEecCcch-hhhhhhhcCCc----------cce----EEEEecCccceeccccCCCCCcceeec
Confidence            34455665432  23455554444 44787753221          111    112469999999999999889999999


Q ss_pred             eCCCeEEEEECCCCee-eEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC-ceeeeeeCCCCCeEEEEEe
Q 013274          123 SYDHYVKVWDTNCTRV-VMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AISQTLSGHRDGIMTVEWS  199 (446)
Q Consensus       123 s~D~~i~iWd~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~-~~~~~l~~h~~~v~sv~~s  199 (446)
                      +.|..+..||+.+... +..+.. ......+.+.-..  .. +.+.+....|++||++.| .++..+++|...|.++.|.
T Consensus       134 svdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~--p~-vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fn  210 (1081)
T KOG0309|consen  134 SVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKD--PN-VLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFN  210 (1081)
T ss_pred             cccccceeeeccCCCcceeeeecccccCceeeecccC--cc-hhhhccCCceEEEeccCCCcceEEecccceeeehHHHh
Confidence            9999999999976542 222211 0111223333222  22 334456678999999877 5778899999999999987


Q ss_pred             cCCCeEEEEeeCCCcEEEEEccC
Q 013274          200 TSSEWILVTGGCDGAIRFWDIRR  222 (446)
Q Consensus       200 ~~~~~~l~S~s~Dg~I~iWd~~~  222 (446)
                      .-....+.+++.|+++++||..+
T Consensus       211 r~~~s~~~s~~~d~tvkfw~y~k  233 (1081)
T KOG0309|consen  211 RFKYSEIMSSSNDGTVKFWDYSK  233 (1081)
T ss_pred             hhhhhhhcccCCCCceeeecccc
Confidence            65444567999999999999754

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.77  E-value=4.1e-06  Score=82.31  Aligned_cols=119  Identities=12%  Similarity=0.139  Sum_probs=71.6

Q ss_pred             EEEEEccCCCEEEEee-cCCcEEEEec--CcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC----CceEEEEeec
Q 013274          313 TGLKVTEDGMYLLSAG-SDSRIRLWDV--ESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM----TAVKAFDIWS  385 (446)
Q Consensus       313 ~~l~fs~dg~~l~sgs-~D~~i~lWd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~d~~~  385 (446)
                      ...+|+|||++|+..+ .++...+|.+  ........   .+............+||+..++....    ..+.+||+.+
T Consensus       284 ~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~---~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~  360 (428)
T PRK01029        284 GNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR---LLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT  360 (428)
T ss_pred             CCeEECCCCCEEEEEECCCCCceEEEEECcccccceE---EeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence            4568999999877654 4666666643  32110011   11111223345678999887665432    3578889887


Q ss_pred             CceEEEecccccceEEEEEcCCCCEEEE-eeC--CCcEEEeCCCCCCCCCcCC
Q 013274          386 GKTCLTFRGHYEYVNCCCFSSQDQELYT-GGN--DRQILVWCPSRHISDGVDA  435 (446)
Q Consensus       386 ~~~~~~l~gH~~~v~~~~fSpd~~~lvt-gs~--D~~v~vW~~~~~~~~~~~~  435 (446)
                      ++... +......+....|+|||++|+- ...  ...|.+|++++.....+..
T Consensus       361 g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~  412 (428)
T PRK01029        361 GRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI  412 (428)
T ss_pred             CCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence            76543 3333445678999999998874 333  3557788887765544433

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.77  E-value=8.3e-07  Score=79.69  Aligned_cols=249  Identities=16%  Similarity=0.203  Sum_probs=155.4

Q ss_pred             EeEEEEeecCCcEEEEEeCCCeEEEEECCCCe-----eeEEEec-------------CCceEEeeeccCCCCceEEEEee
Q 013274          106 ISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR-----VVMNFKM-------------PGKVYRTAMSPLAASHMLIAAGT  167 (446)
Q Consensus       106 V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~-----~~~~~~~-------------~~~~~~~~~~~~~~~~~~lasgs  167 (446)
                      +.+.+-+...|.+||||..+|.|.++.-+...     ....++.             ..++..+.+...... ..++...
T Consensus        27 iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~-a~FLlst  105 (433)
T KOG1354|consen   27 IISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNL-AEFLLST  105 (433)
T ss_pred             ceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCc-cEEEEec
Confidence            33444555689999999999999999643211     1122221             223555566555433 3455556


Q ss_pred             CCCcEEEEeCCCCce-----------------------------------eeee-eCCCCCeEEEEEecCCCeEEEEeeC
Q 013274          168 EDVQVRLCDIASGAI-----------------------------------SQTL-SGHRDGIMTVEWSTSSEWILVTGGC  211 (446)
Q Consensus       168 ~d~~v~vwd~~~~~~-----------------------------------~~~l-~~h~~~v~sv~~s~~~~~~l~S~s~  211 (446)
                      .|.+|++|-+.....                                   .+.+ .+|.--|.+++++.|.+. ++| +.
T Consensus       106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et-~lS-AD  183 (433)
T KOG1354|consen  106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKET-FLS-AD  183 (433)
T ss_pred             CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccce-Eee-cc
Confidence            799999998742210                                   0111 357778999999988775 555 45


Q ss_pred             CCcEEEEEccCC-ceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCcc
Q 013274          212 DGAIRFWDIRRA-GCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSV  290 (446)
Q Consensus       212 Dg~I~iWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (446)
                      |=.|.+|.+... +++.+.+.....                                                       
T Consensus       184 dLRINLWnlei~d~sFnIVDIKP~n-------------------------------------------------------  208 (433)
T KOG1354|consen  184 DLRINLWNLEIIDQSFNIVDIKPAN-------------------------------------------------------  208 (433)
T ss_pred             ceeeeeccccccCCceeEEEccccC-------------------------------------------------------
Confidence            788999987532 122111100000                                                       


Q ss_pred             ccccCCCcccccccccccccCeEEEEEccCC-CEEEEeecCCcEEEEecCcCc-----eeee-eeeE-E-----EeecCC
Q 013274          291 RQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVESGR-----NTLV-NFET-V-----RLQTSK  357 (446)
Q Consensus       291 ~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~sgs~D~~i~lWd~~~~~-----~~~~-~~~~-~-----~~~~~~  357 (446)
                                    ...-.--|++--|+|.. ..++=.++.|+||+-|++...     ..+. ..+. .     ......
T Consensus       209 --------------mEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsS  274 (433)
T KOG1354|consen  209 --------------MEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISS  274 (433)
T ss_pred             --------------HHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhh
Confidence                          00001125666788753 455666789999999998421     1110 0000 0     000123


Q ss_pred             CeEEEEcCCCcEEEEeCCCceEEEEe-ecCceEEEecccc------------cce---EEEEEcCCCCEEEEeeCCCcEE
Q 013274          358 PIQLATTQDPAVVFVPCMTAVKAFDI-WSGKTCLTFRGHY------------EYV---NCCCFSSQDQELYTGGNDRQIL  421 (446)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~l~gH~------------~~v---~~~~fSpd~~~lvtgs~D~~v~  421 (446)
                      ...+.|++++.++++...-++++||+ ...+.+.+++-|.            +.|   .-|+||-++..+.|||.....+
T Consensus       275 ISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~fr  354 (433)
T KOG1354|consen  275 ISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFR  354 (433)
T ss_pred             hhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEE
Confidence            44678999999999888889999999 6677788887774            223   4688999999999999999999


Q ss_pred             EeCCC
Q 013274          422 VWCPS  426 (446)
Q Consensus       422 vW~~~  426 (446)
                      +++..
T Consensus       355 vf~~~  359 (433)
T KOG1354|consen  355 VFNLA  359 (433)
T ss_pred             EecCC
Confidence            99954

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=98.73  E-value=2e-05  Score=70.69  Aligned_cols=340  Identities=16%  Similarity=0.155  Sum_probs=162.1

Q ss_pred             cceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEe
Q 013274           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS  123 (446)
Q Consensus        44 ~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s  123 (446)
                      ..|.-|-|..+.-..|-.++.|+.|.+|++...+.+-   .|              +.-..++.+..|+|....+|.+..
T Consensus        49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~c---kI--------------deg~agls~~~WSPdgrhiL~tse  111 (447)
T KOG4497|consen   49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYC---KI--------------DEGQAGLSSISWSPDGRHILLTSE  111 (447)
T ss_pred             HHhhheeeeccceeeeeeeeccceEEEEEeecceeEE---Ee--------------ccCCCcceeeeECCCcceEeeeec
Confidence            3456677775433445555889999999986544320   00              122345667889984447788888


Q ss_pred             CCCeEEEEECCCCeeeEEEecCC-ceEEeeeccCCCCce-----------------------------EEEE----eeCC
Q 013274          124 YDHYVKVWDTNCTRVVMNFKMPG-KVYRTAMSPLAASHM-----------------------------LIAA----GTED  169 (446)
Q Consensus       124 ~D~~i~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----------------------------~las----gs~d  169 (446)
                      -|-.|.+|.+.+.+... ++.+. .+...++.++..-..                             +=.+    +-.+
T Consensus       112 F~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg  190 (447)
T KOG4497|consen  112 FDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDG  190 (447)
T ss_pred             ceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCC
Confidence            99999999998766532 12111 122333443321000                             0001    1123


Q ss_pred             CcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCC-Cccccccee
Q 013274          170 VQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRR-PPLLKRKVS  248 (446)
Q Consensus       170 ~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  248 (446)
                      ..+.+||---.-.+..+ .-.-.+..++|+|.++ +|+.|+.|+.+|+-+--+-+.+..+-...+-.... ..+.+....
T Consensus       191 ~~laVwd~~Leykv~aY-e~~lG~k~v~wsP~~q-flavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~  268 (447)
T KOG4497|consen  191 NWLAVWDNVLEYKVYAY-ERGLGLKFVEWSPCNQ-FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFS  268 (447)
T ss_pred             cEEEEecchhhheeeee-eeccceeEEEeccccc-eEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcc
Confidence            45677774221111111 1235689999999887 57899999999988754433322211100000000 000000000


Q ss_pred             ecc-ccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEe
Q 013274          249 ISK-SLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSA  327 (446)
Q Consensus       249 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sg  327 (446)
                      +.+ ....-...+....+...         ..+...+ ........++.... ..+.... .-.+..++|++|..|++|-
T Consensus       269 ~~ql~~~cLsf~p~~~~a~~~---------~~se~~Y-E~~~~pv~~~~lkp-~tD~pnP-k~g~g~lafs~Ds~y~aTr  336 (447)
T KOG4497|consen  269 IVQLLHHCLSFTPTDLEAHIW---------EESETIY-EQQMTPVKVHKLKP-PTDFPNP-KCGAGKLAFSCDSTYAATR  336 (447)
T ss_pred             hhhhcccccccCCCccccCcc---------ccchhhh-hhhhcceeeecccC-CCCCCCc-ccccceeeecCCceEEeee
Confidence            000 00000000000000000         0000000 00000000000000 0000111 2347789999999999986


Q ss_pred             ecC--CcEEEEecCcCceeeeeeeEEEeecCCCeE-EEEcCCCcEEEE-eCCCceEEEEeecCceEEEecccccceEEEE
Q 013274          328 GSD--SRIRLWDVESGRNTLVNFETVRLQTSKPIQ-LATTQDPAVVFV-PCMTAVKAFDIWSGKTCLTFRGHYEYVNCCC  403 (446)
Q Consensus       328 s~D--~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~  403 (446)
                      ...  .-+-+||+...+...+      +.+..++. +...|.-..+++ -+......|.. +|......++..-.|..+.
T Consensus       337 nd~~PnalW~Wdlq~l~l~av------LiQk~piraf~WdP~~prL~vctg~srLY~W~p-sg~~~V~vP~~GF~i~~l~  409 (447)
T KOG4497|consen  337 NDKYPNALWLWDLQNLKLHAV------LIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAP-SGPRVVGVPKKGFNIQKLQ  409 (447)
T ss_pred             cCCCCceEEEEechhhhhhhh------hhhccceeEEEeCCCCceEEEEcCCceEEEEcC-CCceEEecCCCCceeeeEE
Confidence            433  4588999987542111      11112222 233343333333 33344455543 2333334444446789999


Q ss_pred             EcCCCCEEEEeeCCCcEEE
Q 013274          404 FSSQDQELYTGGNDRQILV  422 (446)
Q Consensus       404 fSpd~~~lvtgs~D~~v~v  422 (446)
                      |.-+|..++-++.|.-..-
T Consensus       410 W~~~g~~i~l~~kDafc~a  428 (447)
T KOG4497|consen  410 WLQPGEFIVLCGKDAFCVA  428 (447)
T ss_pred             ecCCCcEEEEEcCCceEEE
Confidence            9999999999999865443

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.71  E-value=3.3e-05  Score=83.90  Aligned_cols=277  Identities=16%  Similarity=0.224  Sum_probs=151.6

Q ss_pred             EEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEE-eCCC
Q 013274           48 SLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG-SYDH  126 (446)
Q Consensus        48 ~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~-s~D~  126 (446)
                      .+++++.++++.++-+..+.|++||..........+ . +....  .......++-.....+++.+ +++.|+.+ ...+
T Consensus       572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~-~-g~~G~--~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~  646 (1057)
T PLN02919        572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGS-T-GEEGL--RDGSFEDATFNRPQGLAYNA-KKNLLYVADTENH  646 (1057)
T ss_pred             eEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEcc-C-CCcCC--CCCchhccccCCCcEEEEeC-CCCEEEEEeCCCc
Confidence            577876667788888889999999975321100000 0 00000  00000001111123445554 45544444 4567


Q ss_pred             eEEEEECCCCeeeEEEecC------------------CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeC
Q 013274          127 YVKVWDTNCTRVVMNFKMP------------------GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG  188 (446)
Q Consensus       127 ~i~iWd~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~  188 (446)
                      .|+++|+.++... ++...                  .....+++.+.  +..++++.+.++.|++||..++... .+.+
T Consensus       647 ~Ir~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~--~g~LyVad~~~~~I~v~d~~~g~v~-~~~G  722 (1057)
T PLN02919        647 ALREIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPV--NEKVYIAMAGQHQIWEYNISDGVTR-VFSG  722 (1057)
T ss_pred             eEEEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecC--CCeEEEEECCCCeEEEEECCCCeEE-EEec
Confidence            8999998776542 22111                  01234555542  3456777778899999999877532 1211


Q ss_pred             ---------C------CCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeecccc
Q 013274          189 ---------H------RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSL  253 (446)
Q Consensus       189 ---------h------~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (446)
                               +      -.....|+|+|++++++++-+.++.|++||+.++... .+........   .            
T Consensus       723 ~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~-~~~gg~~~~~---~------------  786 (1057)
T PLN02919        723 DGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSR-LLAGGDPTFS---D------------  786 (1057)
T ss_pred             CCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEE-EEEecccccC---c------------
Confidence                     1      1234569999998877788888899999998765421 1100000000   0            


Q ss_pred             ccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcE
Q 013274          254 SAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRI  333 (446)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i  333 (446)
                                    ....         .+.  ..+.       +       ..........|+|+++|..+++.+.+++|
T Consensus       787 --------------~l~~---------fG~--~dG~-------g-------~~~~l~~P~Gvavd~dG~LYVADs~N~rI  827 (1057)
T PLN02919        787 --------------NLFK---------FGD--HDGV-------G-------SEVLLQHPLGVLCAKDGQIYVADSYNHKI  827 (1057)
T ss_pred             --------------cccc---------ccC--CCCc-------h-------hhhhccCCceeeEeCCCcEEEEECCCCEE
Confidence                          0000         000  0000       0       00011124578999999999999999999


Q ss_pred             EEEecCcCceeeeeeeE---------EEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCce
Q 013274          334 RLWDVESGRNTLVNFET---------VRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKT  388 (446)
Q Consensus       334 ~lWd~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~  388 (446)
                      ++||..++......-..         .......+..+++++++.++++... ..+++||+.+++.
T Consensus       828 rviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        828 KKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             EEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            99999876432110000         0011234666788888876655544 5799999988764

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.70  E-value=9.4e-08  Score=101.77  Aligned_cols=155  Identities=19%  Similarity=0.260  Sum_probs=111.8

Q ss_pred             ccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCc--eEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc
Q 013274          104 YAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK--VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA  181 (446)
Q Consensus       104 ~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~  181 (446)
                      ..|.++..+|. ..+.+||+.||.|++|.-..++.+..+...|.  +.+..+...   +.-+..+-.||.+-+|.+. ++
T Consensus      2209 ~~v~r~~sHp~-~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~q---Gnk~~i~d~dg~l~l~q~~-pk 2283 (2439)
T KOG1064|consen 2209 ENVRRMTSHPS-DPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQ---GNKFGIVDGDGDLSLWQAS-PK 2283 (2439)
T ss_pred             CceeeecCCCC-CceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhccc---CCceeeeccCCceeecccC-Cc
Confidence            34555555664 34789999999999999887887777765554  333344432   3346677779999999987 55


Q ss_pred             eeeeeeCCCCCeEEEEEecCCCeEEEEee---CCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCC
Q 013274          182 ISQTLSGHRDGIMTVEWSTSSEWILVTGG---CDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQN  258 (446)
Q Consensus       182 ~~~~l~~h~~~v~sv~~s~~~~~~l~S~s---~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (446)
                      +....+-|+......+|-.  . ++++++   .++.+.+||.-.....                                
T Consensus      2284 ~~~s~qchnk~~~Df~Fi~--s-~~~tag~s~d~~n~~lwDtl~~~~~-------------------------------- 2328 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--S-LLATAGRSSDNRNVCLWDTLLPPMN-------------------------------- 2328 (2439)
T ss_pred             ceeccccCCccccceeeee--h-hhhccccCCCCCcccchhcccCccc--------------------------------
Confidence            6666677888888888875  2 356654   4678999996421000                                


Q ss_pred             CCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEec
Q 013274          259 SSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDV  338 (446)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~  338 (446)
                                                    .             -....|.+.++++++-|..+.|+|||.+|.|++||+
T Consensus      2329 ------------------------------s-------------~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~ 2365 (2439)
T KOG1064|consen 2329 ------------------------------S-------------LVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDI 2365 (2439)
T ss_pred             ------------------------------c-------------eeeeecCCCceEEEEcCcceEEEecCCcCcEEEeeh
Confidence                                          0             001468888999999999999999999999999999


Q ss_pred             CcC
Q 013274          339 ESG  341 (446)
Q Consensus       339 ~~~  341 (446)
                      ...
T Consensus      2366 rqr 2368 (2439)
T KOG1064|consen 2366 RQR 2368 (2439)
T ss_pred             HHH
Confidence            854

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.67  E-value=4.5e-07  Score=83.02  Aligned_cols=152  Identities=18%  Similarity=0.265  Sum_probs=95.0

Q ss_pred             cCCcEEEEEeCCCeEEEEECCCC----eeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCC
Q 013274          114 VDTGLFVTGSYDHYVKVWDTNCT----RVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGH  189 (446)
Q Consensus       114 ~~~~~l~s~s~D~~i~iWd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h  189 (446)
                      +.+.++|.+-.++...++++...    ++...+..+.....+.+........+.-..+....+.+|....+ ...-+-||
T Consensus        72 ~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~-~~~~~lGh  150 (390)
T KOG3914|consen   72 DSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG-RCEPILGH  150 (390)
T ss_pred             CCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccccc-Ccchhhhh
Confidence            45667777766666555554322    22222223333333333333222222223344455666665543 33456689


Q ss_pred             CCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCcccc
Q 013274          190 RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKR  269 (446)
Q Consensus       190 ~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (446)
                      -..++.|+|+||++. ++|+..|..||+-.....-.   +                                        
T Consensus       151 vSml~dVavS~D~~~-IitaDRDEkIRvs~ypa~f~---I----------------------------------------  186 (390)
T KOG3914|consen  151 VSMLLDVAVSPDDQF-IITADRDEKIRVSRYPATFV---I----------------------------------------  186 (390)
T ss_pred             hhhhheeeecCCCCE-EEEecCCceEEEEecCcccc---h----------------------------------------
Confidence            999999999999985 68999999999876432100   0                                        


Q ss_pred             ccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCce
Q 013274          270 SANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRN  343 (446)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~  343 (446)
                                                      ..-..||...|..++.-+ +..|+|||.|++|++||+.+++.
T Consensus       187 --------------------------------esfclGH~eFVS~isl~~-~~~LlS~sGD~tlr~Wd~~sgk~  227 (390)
T KOG3914|consen  187 --------------------------------ESFCLGHKEFVSTISLTD-NYLLLSGSGDKTLRLWDITSGKL  227 (390)
T ss_pred             --------------------------------hhhccccHhheeeeeecc-CceeeecCCCCcEEEEecccCCc
Confidence                                            001247888898888865 55689999999999999999875

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.65  E-value=5.6e-05  Score=73.40  Aligned_cols=269  Identities=18%  Similarity=0.142  Sum_probs=149.3

Q ss_pred             CCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCC
Q 013274           56 ERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNC  135 (446)
Q Consensus        56 ~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~  135 (446)
                      +..+..++.++.|.-+|..+++..=            ..  .........   ..   .++..++.++.|+.+..+|.++
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W------------~~--~~~~~~~~~---p~---v~~~~v~v~~~~g~l~ald~~t  124 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLW------------RV--DLDERLSGG---VG---ADGGLVFVGTEKGEVIALDAED  124 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEee------------ee--cCCCCcccc---eE---EcCCEEEEEcCCCEEEEEECCC
Confidence            3468888899999999988775310            00  000011111   11   1356788888999999999999


Q ss_pred             CeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCe-----EEEEEecCCCeEEEEee
Q 013274          136 TRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI-----MTVEWSTSSEWILVTGG  210 (446)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v-----~sv~~s~~~~~~l~S~s  210 (446)
                      ++.+......+.+..   .+...+ ..++.++.++.++.+|.++|+.+..+.......     .+..+. + .. ++.+.
T Consensus       125 G~~~W~~~~~~~~~~---~p~v~~-~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~-v~~~~  197 (377)
T TIGR03300       125 GKELWRAKLSSEVLS---PPLVAN-GLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GG-VLVGF  197 (377)
T ss_pred             CcEeeeeccCceeec---CCEEEC-CEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-CE-EEEEC
Confidence            998877766554332   121112 245666779999999999999887765433221     111222 2 23 56777


Q ss_pred             CCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCcc
Q 013274          211 CDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSV  290 (446)
Q Consensus       211 ~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (446)
                      .++.+.-+|+++++..-....... .+.                                                 ...
T Consensus       198 ~~g~v~ald~~tG~~~W~~~~~~~-~g~-------------------------------------------------~~~  227 (377)
T TIGR03300       198 AGGKLVALDLQTGQPLWEQRVALP-KGR-------------------------------------------------TEL  227 (377)
T ss_pred             CCCEEEEEEccCCCEeeeeccccC-CCC-------------------------------------------------Cch
Confidence            789999999887653211100000 000                                                 000


Q ss_pred             ccccCCCccccccccccc-ccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcE
Q 013274          291 RQRLHPGMLSSQDRATAH-YGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAV  369 (446)
Q Consensus       291 ~~~~~~~~~~~~~~~~~h-~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (446)
                       .           ..... ..++    +  .+..+..++.++.+..||+.+++..-. ..     ......++  ..+..
T Consensus       228 -~-----------~~~~~~~~p~----~--~~~~vy~~~~~g~l~a~d~~tG~~~W~-~~-----~~~~~~p~--~~~~~  281 (377)
T TIGR03300       228 -E-----------RLVDVDGDPV----V--DGGQVYAVSYQGRVAALDLRSGRVLWK-RD-----ASSYQGPA--VDDNR  281 (377)
T ss_pred             -h-----------hhhccCCccE----E--ECCEEEEEEcCCEEEEEECCCCcEEEe-ec-----cCCccCce--EeCCE
Confidence             0           00000 0011    1  244666677899999999988753211 11     01111111  12334


Q ss_pred             EEEeC-CCceEEEEeecCceEEEeccccc-ceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCC
Q 013274          370 VFVPC-MTAVKAFDIWSGKTCLTFRGHYE-YVNCCCFSSQDQELYTGGNDRQILVWCPSRHI  429 (446)
Q Consensus       370 ~~~~~-~~~~~~~d~~~~~~~~~l~gH~~-~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~  429 (446)
                      +++.. ...+..+|..+++.+-.+..-.. .......  .+..|+.++.|+.|.++++.++.
T Consensus       282 vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~  341 (377)
T TIGR03300       282 LYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGS  341 (377)
T ss_pred             EEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCC
Confidence            44443 45788888888876543321111 1122222  46788899999999999987553

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.64  E-value=8e-06  Score=78.04  Aligned_cols=115  Identities=10%  Similarity=0.191  Sum_probs=87.9

Q ss_pred             cccCeEEEEEccCCCE--EEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC----CceEEE
Q 013274          308 HYGAVTGLKVTEDGMY--LLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM----TAVKAF  381 (446)
Q Consensus       308 h~~~v~~l~fs~dg~~--l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  381 (446)
                      ..|+|.++.|+|+|+-  ++-|-.=..+.|+|++.. .      ...+..+....+.++|.+.+++.++-    +.+.+|
T Consensus       269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-~------v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvw  341 (566)
T KOG2315|consen  269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-P------VFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVW  341 (566)
T ss_pred             CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-E------eEeCCCCCccceEECCCCCEEEEeecCCCCCceEEE
Confidence            3689999999999975  445667788999998753 1      12334556667889999999888754    479999


Q ss_pred             EeecCceEEEecccccceEEEEEcCCCCEEEEeeC------CCcEEEeCCCCCCCC
Q 013274          382 DIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGN------DRQILVWCPSRHISD  431 (446)
Q Consensus       382 d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~------D~~v~vW~~~~~~~~  431 (446)
                      |+.+.+++..+..-.  -+-+.|+|||++++|+..      |+.++||+..+..+.
T Consensus       342 Dv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~  395 (566)
T KOG2315|consen  342 DVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLH  395 (566)
T ss_pred             eccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceee
Confidence            999988877776543  357899999999997653      799999998877654

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.62  E-value=1.2e-07  Score=58.90  Aligned_cols=38  Identities=37%  Similarity=0.830  Sum_probs=34.8

Q ss_pred             ceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEE
Q 013274          181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD  219 (446)
Q Consensus       181 ~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd  219 (446)
                      +++.++.+|.+.|.+++|+|++. .|+|++.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence            56788999999999999999977 479999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=2e-06  Score=79.86  Aligned_cols=270  Identities=14%  Similarity=0.168  Sum_probs=162.7

Q ss_pred             CccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEE
Q 013274           42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT  121 (446)
Q Consensus        42 H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s  121 (446)
                      |...|+-+..+  -.++++++|-||.++.|.-..-.-.             .. -.++..|-+.|.+++.+- ++-++.|
T Consensus         8 hrd~i~hv~~t--ka~fiiqASlDGh~KFWkKs~isGv-------------Ef-VKhFraHL~~I~sl~~S~-dg~L~~S   70 (558)
T KOG0882|consen    8 HRDVITHVFPT--KAKFIIQASLDGHKKFWKKSRISGV-------------EF-VKHFRAHLGVILSLAVSY-DGWLFRS   70 (558)
T ss_pred             ccceeeeEeee--hhheEEeeecchhhhhcCCCCccce-------------ee-hhhhHHHHHHHHhhhccc-cceeEee
Confidence            66667766654  3579999999999999964321100             00 123345666666655543 7878899


Q ss_pred             EeC-CCeEEEEECCCCeee---EEEecCCceEEeeeccCCCCceEEEE-eeCCCcEEEEeCCCCc-eeeeee-CCCCCeE
Q 013274          122 GSY-DHYVKVWDTNCTRVV---MNFKMPGKVYRTAMSPLAASHMLIAA-GTEDVQVRLCDIASGA-ISQTLS-GHRDGIM  194 (446)
Q Consensus       122 ~s~-D~~i~iWd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~las-gs~d~~v~vwd~~~~~-~~~~l~-~h~~~v~  194 (446)
                      .+. |+.+|++|+++-..+   +..-+++.+..+....+..  .++|. .-.++.+.++|-.... ....+. =|..+|.
T Consensus        71 v~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~--s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~  148 (558)
T KOG0882|consen   71 VEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKI--SLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVK  148 (558)
T ss_pred             ccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCee--eeEEeecccCCCcEEECCcCCcCccceecccccCceE
Confidence            888 999999998765433   2233455544333322211  23443 3467899999976554 233333 4999999


Q ss_pred             EEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCC
Q 013274          195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGN  274 (446)
Q Consensus       195 sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (446)
                      .+.+++.+. .++|....|-|.-|....  .++..+.      .        ..          .  ..+    ...   
T Consensus       149 ~i~y~qa~D-s~vSiD~~gmVEyWs~e~--~~qfPr~------~--------l~----------~--~~K----~eT---  192 (558)
T KOG0882|consen  149 KIRYNQAGD-SAVSIDISGMVEYWSAEG--PFQFPRT------N--------LN----------F--ELK----HET---  192 (558)
T ss_pred             EEEeecccc-ceeeccccceeEeecCCC--cccCccc------c--------cc----------c--ccc----ccc---
Confidence            999999887 468888889999997642  1111100      0        00          0  000    000   


Q ss_pred             ceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeee-------
Q 013274          275 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVN-------  347 (446)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~-------  347 (446)
                                                .............++.|+|+|..+.+-+.|.+|+++++.+++..+..       
T Consensus       193 --------------------------dLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~  246 (558)
T KOG0882|consen  193 --------------------------DLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDA  246 (558)
T ss_pred             --------------------------hhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhh
Confidence                                      00000111234678899999999999999999999999988632110       


Q ss_pred             ---------eeEEEee-------------cCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEe
Q 013274          348 ---------FETVRLQ-------------TSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTF  392 (446)
Q Consensus       348 ---------~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l  392 (446)
                               +....+.             ......+.+...+..+.-++.-.++++++.+++..+.|
T Consensus       247 ~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~ri~  313 (558)
T KOG0882|consen  247 QYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVRIL  313 (558)
T ss_pred             hhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEEEe
Confidence                     0000000             00112345555666777677778999999888766544

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.60  E-value=1.6e-05  Score=69.35  Aligned_cols=147  Identities=12%  Similarity=-0.005  Sum_probs=90.6

Q ss_pred             CEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCC
Q 013274           57 RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT  136 (446)
Q Consensus        57 ~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~  136 (446)
                      .+|+.|+.-|...+|.+.+.+.     ++           +....|...|.-+.-+....-.+.-++.|+++++.+++.+
T Consensus        85 ~~la~gG~~g~fd~~~~~tn~~-----h~-----------~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~  148 (344)
T KOG4532|consen   85 VTLADGGASGQFDLFACNTNDG-----HL-----------YQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGD  148 (344)
T ss_pred             cEEEeccccceeeeecccCccc-----ce-----------eeecccccchhhhhhhcccccceeeccCCcceeEEEEecC
Confidence            4799999999999999876432     10           0001122212111111111224667889999999998754


Q ss_pred             eeeEEEecC-CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC-cee-e-eeeCCCCCeEEEEEecCCCeEEEEeeCC
Q 013274          137 RVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AIS-Q-TLSGHRDGIMTVEWSTSSEWILVTGGCD  212 (446)
Q Consensus       137 ~~~~~~~~~-~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~-~~~-~-~l~~h~~~v~sv~~s~~~~~~l~S~s~D  212 (446)
                      ........+ -..++..++++   ..+.++.+....|..|.++.. .++ . ....-++.-.+.+|+..+. .+|++..|
T Consensus       149 s~~~~~h~~~~~~ns~~~snd---~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~-~FAv~~Qd  224 (344)
T KOG4532|consen  149 SNKFAVHNQNLTQNSLHYSND---PSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL-QFAVVFQD  224 (344)
T ss_pred             cccceeeccccceeeeEEcCC---CceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc-eEEEEecC
Confidence            332211111 11445555553   456777777788999988754 332 2 3444556668889987765 58999999


Q ss_pred             CcEEEEEccCC
Q 013274          213 GAIRFWDIRRA  223 (446)
Q Consensus       213 g~I~iWd~~~~  223 (446)
                      |++.|||+|..
T Consensus       225 g~~~I~DVR~~  235 (344)
T KOG4532|consen  225 GTCAIYDVRNM  235 (344)
T ss_pred             CcEEEEEeccc
Confidence            99999999863

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.59  E-value=4.4e-05  Score=75.06  Aligned_cols=218  Identities=11%  Similarity=0.069  Sum_probs=118.3

Q ss_pred             EeEEEEeecCCcE--E-EEEeCCCe--EEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeC----CCcEEEEe
Q 013274          106 ISSAIWYPVDTGL--F-VTGSYDHY--VKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTE----DVQVRLCD  176 (446)
Q Consensus       106 V~~~~~~~~~~~~--l-~s~s~D~~--i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~----d~~v~vwd  176 (446)
                      +.+-.|+| |++.  + ++...++.  |.+.++.+++........+......++|++.  .++.+...    +-.+..||
T Consensus       187 ~~sP~wSP-DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~--~Laf~s~~~g~~di~~~~~~  263 (428)
T PRK01029        187 SITPTWMH-IGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKK--LLAFISDRYGNPDLFIQSFS  263 (428)
T ss_pred             cccceEcc-CCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCC--EEEEEECCCCCcceeEEEee
Confidence            33457887 6643  2 34444444  6666787776544333445555567777543  33333322    22344477


Q ss_pred             CCCC---ceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCC---ceeEEeecccccccCCCcccccceeec
Q 013274          177 IASG---AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA---GCFRVLDQSQSQLGRRPPLLKRKVSIS  250 (446)
Q Consensus       177 ~~~~---~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (446)
                      +..+   .......++.+.....+|+|+++.++.+...+|..+||.+.-.   +..+                       
T Consensus       264 ~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~-----------------------  320 (428)
T PRK01029        264 LETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR-----------------------  320 (428)
T ss_pred             cccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceE-----------------------
Confidence            7653   3222333333445678999999976555556777677754210   0000                       


Q ss_pred             cccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecC
Q 013274          251 KSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD  330 (446)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D  330 (446)
                                                                           ....+.+.+....|||||++|+..+.+
T Consensus       321 -----------------------------------------------------~lt~~~~~~~~p~wSPDG~~Laf~~~~  347 (428)
T PRK01029        321 -----------------------------------------------------LLTKKYRNSSCPAWSPDGKKIAFCSVI  347 (428)
T ss_pred             -----------------------------------------------------EeccCCCCccceeECCCCCEEEEEEcC
Confidence                                                                 000112234567899999988765543


Q ss_pred             ---CcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEe-CC---CceEEEEeecCceEEEecccccceEEEE
Q 013274          331 ---SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVP-CM---TAVKAFDIWSGKTCLTFRGHYEYVNCCC  403 (446)
Q Consensus       331 ---~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~d~~~~~~~~~l~gH~~~v~~~~  403 (446)
                         ..|.+||+.+++.....     ..........++|++..++.. ..   ..+.++++..++..... ...+.+...+
T Consensus       348 ~g~~~I~v~dl~~g~~~~Lt-----~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt-~~~g~~~~p~  421 (428)
T PRK01029        348 KGVRQICVYDLATGRDYQLT-----TSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV-IGSGEKRFPS  421 (428)
T ss_pred             CCCcEEEEEECCCCCeEEcc-----CCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCcccCce
Confidence               46899999887543211     111122346678888766543 22   34666777666543333 3444556677


Q ss_pred             EcCCC
Q 013274          404 FSSQD  408 (446)
Q Consensus       404 fSpd~  408 (446)
                      |||-.
T Consensus       422 Ws~~~  426 (428)
T PRK01029        422 WGAFP  426 (428)
T ss_pred             ecCCC
Confidence            77643

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.58  E-value=7.6e-05  Score=72.48  Aligned_cols=257  Identities=13%  Similarity=0.091  Sum_probs=143.8

Q ss_pred             CCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCC
Q 013274           56 ERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNC  135 (446)
Q Consensus        56 ~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~  135 (446)
                      +..++.++.|+.+..+|.++++..=                +..  -...+.+....  .++.++.++.|+.+..||.++
T Consensus       105 ~~~v~v~~~~g~l~ald~~tG~~~W----------------~~~--~~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~t  164 (377)
T TIGR03300       105 GGLVFVGTEKGEVIALDAEDGKELW----------------RAK--LSSEVLSPPLV--ANGLVVVRTNDGRLTALDAAT  164 (377)
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEee----------------eec--cCceeecCCEE--ECCEEEEECCCCeEEEEEcCC
Confidence            3457778889999999987765310                000  00111111111  234677778899999999999


Q ss_pred             CeeeEEEecCCceEEee--eccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCC--C--------Ce-EEEEEecCC
Q 013274          136 TRVVMNFKMPGKVYRTA--MSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHR--D--------GI-MTVEWSTSS  202 (446)
Q Consensus       136 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~--~--------~v-~sv~~s~~~  202 (446)
                      ++.+..+..........  .+|...+ ..++.+..++.+..+|+++|+.+....-..  +        .+ .+..+.  +
T Consensus       165 G~~~W~~~~~~~~~~~~~~~sp~~~~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~--~  241 (377)
T TIGR03300       165 GERLWTYSRVTPALTLRGSASPVIAD-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD--G  241 (377)
T ss_pred             CceeeEEccCCCceeecCCCCCEEEC-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE--C
Confidence            99887766543322111  1222112 256677788999999999998766543110  0        01 111122  3


Q ss_pred             CeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccc
Q 013274          203 EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVG  282 (446)
Q Consensus       203 ~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (446)
                      .. ++.++.+|.+..||+.+++..-..+                                                    
T Consensus       242 ~~-vy~~~~~g~l~a~d~~tG~~~W~~~----------------------------------------------------  268 (377)
T TIGR03300       242 GQ-VYAVSYQGRVAALDLRSGRVLWKRD----------------------------------------------------  268 (377)
T ss_pred             CE-EEEEEcCCEEEEEECCCCcEEEeec----------------------------------------------------
Confidence            33 4567788999999987664211100                                                    


Q ss_pred             eeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEE
Q 013274          283 RIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLA  362 (446)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~  362 (446)
                                            ...    ....  ..++..+..++.|+.|..+|..+++.... ....  .........
T Consensus       269 ----------------------~~~----~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~W~-~~~~--~~~~~ssp~  317 (377)
T TIGR03300       269 ----------------------ASS----YQGP--AVDDNRLYVTDADGVVVALDRRSGSELWK-NDEL--KYRQLTAPA  317 (377)
T ss_pred             ----------------------cCC----ccCc--eEeCCEEEEECCCCeEEEEECCCCcEEEc-cccc--cCCccccCE
Confidence                                  000    0011  12345666677899999999988753211 1111  000000011


Q ss_pred             EcCCCcEEEEe-CCCceEEEEeecCceEEEecccccceE-EEEEcCCCCEEEEeeCCCcEEEe
Q 013274          363 TTQDPAVVFVP-CMTAVKAFDIWSGKTCLTFRGHYEYVN-CCCFSSQDQELYTGGNDRQILVW  423 (446)
Q Consensus       363 ~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~l~gH~~~v~-~~~fSpd~~~lvtgs~D~~v~vW  423 (446)
                      .  .+..+++. ....+.++|..+++.+-.+..+...+. .-++ .++ .|+.++.||.|..|
T Consensus       318 i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~-~~~-~l~v~~~dG~l~~~  376 (377)
T TIGR03300       318 V--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVV-VGD-GLLVQTRDGDLYAF  376 (377)
T ss_pred             E--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEE-ECC-EEEEEeCCceEEEe
Confidence            1  12344444 445788999999999888887665433 3333 344 57788999988765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.55  E-value=1.3e-06  Score=80.19  Aligned_cols=107  Identities=17%  Similarity=0.288  Sum_probs=81.3

Q ss_pred             EEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeee-eCCCCCeEEEE
Q 013274          119 FVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL-SGHRDGIMTVE  197 (446)
Q Consensus       119 l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l-~~h~~~v~sv~  197 (446)
                      .-.++++..+.+|....+.+...+.+-..+..++++++.   .+|+++..|+.|++-....-..+..+ .||..-|..++
T Consensus       125 ~dkagD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~---~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~is  201 (390)
T KOG3914|consen  125 ADKAGDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDD---QFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTIS  201 (390)
T ss_pred             EeecCCceeeeeecccccCcchhhhhhhhhheeeecCCC---CEEEEecCCceEEEEecCcccchhhhccccHhheeeee
Confidence            345677788888887765555444444456788888864   58899999999999877655455444 58999999999


Q ss_pred             EecCCCeEEEEeeCCCcEEEEEccCCceeEEee
Q 013274          198 WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLD  230 (446)
Q Consensus       198 ~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~  230 (446)
                      .-++.  .|+|+|.|+++++||+++++++..++
T Consensus       202 l~~~~--~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  202 LTDNY--LLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             eccCc--eeeecCCCCcEEEEecccCCcccccc
Confidence            88653  47899999999999999998875554

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.53  E-value=0.00072  Score=61.83  Aligned_cols=275  Identities=10%  Similarity=0.149  Sum_probs=158.2

Q ss_pred             CCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeC---CCeEEEEECCC--Cee-
Q 013274           65 DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY---DHYVKVWDTNC--TRV-  138 (446)
Q Consensus        65 Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~---D~~i~iWd~~~--~~~-  138 (446)
                      ++-|.+|++.+.+-     .+...         ....+...++-+.+.+ +.+.|.++-.   ++.|--+.++.  |.+ 
T Consensus        15 s~gI~v~~ld~~~g-----~l~~~---------~~v~~~~nptyl~~~~-~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt   79 (346)
T COG2706          15 SQGIYVFNLDTKTG-----ELSLL---------QLVAELGNPTYLAVNP-DQRHLYVVNEPGEEGGVAAYRIDPDDGRLT   79 (346)
T ss_pred             CCceEEEEEeCccc-----ccchh---------hhccccCCCceEEECC-CCCEEEEEEecCCcCcEEEEEEcCCCCeEE
Confidence            56799999874321     11000         0113344556677776 5667766644   47777777664  443 


Q ss_pred             -eEEEecCCce-EEeeeccCCCCceEEEEe-eCCCcEEEEeCCC-Ccee--eeeeCCCCC----------eEEEEEecCC
Q 013274          139 -VMNFKMPGKV-YRTAMSPLAASHMLIAAG-TEDVQVRLCDIAS-GAIS--QTLSGHRDG----------IMTVEWSTSS  202 (446)
Q Consensus       139 -~~~~~~~~~~-~~~~~~~~~~~~~~lasg-s~d~~v~vwd~~~-~~~~--~~l~~h~~~----------v~sv~~s~~~  202 (446)
                       +.....++.. ..+++.+.   ..+++++ ..-+.|.++-++. |.+.  ..+..|.+.          +-++.|.|++
T Consensus        80 ~ln~~~~~g~~p~yvsvd~~---g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~  156 (346)
T COG2706          80 FLNRQTLPGSPPCYVSVDED---GRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG  156 (346)
T ss_pred             EeeccccCCCCCeEEEECCC---CCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC
Confidence             2222333332 44555543   2344444 4567899998865 4332  123345555          7888999999


Q ss_pred             CeEEEEee-CCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeeccc
Q 013274          203 EWILVTGG-CDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV  281 (446)
Q Consensus       203 ~~~l~S~s-~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (446)
                      +++ ++.. .--.|.+|++..++.. ..+.                                                  
T Consensus       157 ~~l-~v~DLG~Dri~~y~~~dg~L~-~~~~--------------------------------------------------  184 (346)
T COG2706         157 RYL-VVPDLGTDRIFLYDLDDGKLT-PADP--------------------------------------------------  184 (346)
T ss_pred             CEE-EEeecCCceEEEEEcccCccc-cccc--------------------------------------------------
Confidence            875 4443 2235888888643210 0000                                                  


Q ss_pred             ceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEE-EEeecCCcEEEEecCcCceeeeeee---EEE--ee-
Q 013274          282 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL-LSAGSDSRIRLWDVESGRNTLVNFE---TVR--LQ-  354 (446)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l-~sgs~D~~i~lWd~~~~~~~~~~~~---~~~--~~-  354 (446)
                                ..+.+            ..--+-|.|+|+|++. +..=-+++|-+|........+..++   .+.  +. 
T Consensus       185 ----------~~v~~------------G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g  242 (346)
T COG2706         185 ----------AEVKP------------GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTG  242 (346)
T ss_pred             ----------cccCC------------CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCC
Confidence                      00000            1124668999999964 3456789999998876322222111   111  11 


Q ss_pred             cCCCeEEEEcCCCcEEEEeC--CCceEEEEeecC--ce--EEEecccccceEEEEEcCCCCEEEEeeCC-CcEEEe--CC
Q 013274          355 TSKPIQLATTQDPAVVFVPC--MTAVKAFDIWSG--KT--CLTFRGHYEYVNCCCFSSQDQELYTGGND-RQILVW--CP  425 (446)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~--~~--~~~l~gH~~~v~~~~fSpd~~~lvtgs~D-~~v~vW--~~  425 (446)
                      ......+..++++..+++..  .+.+.++.+...  ++  ......|.....++.|+|++++|+.+..| .+|.|+  ++
T Consensus       243 ~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~  322 (346)
T COG2706         243 TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK  322 (346)
T ss_pred             CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence            12345678899999988864  357777777543  22  23334455557899999999999876654 568888  55


Q ss_pred             CCCCCC
Q 013274          426 SRHISD  431 (446)
Q Consensus       426 ~~~~~~  431 (446)
                      +++.+.
T Consensus       323 ~TG~L~  328 (346)
T COG2706         323 ETGRLT  328 (346)
T ss_pred             CCceEE
Confidence            555543

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=98.51  E-value=2.3e-06  Score=81.83  Aligned_cols=169  Identities=11%  Similarity=0.159  Sum_probs=112.9

Q ss_pred             CccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEE
Q 013274           42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT  121 (446)
Q Consensus        42 H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s  121 (446)
                      ..+.+|++..++ ...+|++|..||.|..||..+.....      .......+.........-.|+++.|.. ++=.++.
T Consensus       174 ~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~------~l~~~~~v~s~pg~~~~~svTal~F~d-~gL~~aV  245 (703)
T KOG2321|consen  174 DSGELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVG------TLDAASSVNSHPGGDAAPSVTALKFRD-DGLHVAV  245 (703)
T ss_pred             ccccceeeeecC-ccceEEecccCceEEEecchhhhhhe------eeecccccCCCccccccCcceEEEecC-CceeEEe
Confidence            458999999986 46689999999999999976432110      000000000001111233488888765 5888999


Q ss_pred             EeCCCeEEEEECCCCeeeEEEecCC--ceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEe
Q 013274          122 GSYDHYVKVWDTNCTRVVMNFKMPG--KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS  199 (446)
Q Consensus       122 ~s~D~~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s  199 (446)
                      |..+|.+.|+|+.+.+++..-.+..  ++..+.+.+.+ ....+++ .....++|||-.+|+....+.. ...+..+++.
T Consensus       246 Gts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~-~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~  322 (703)
T KOG2321|consen  246 GTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTD-QQNKVVS-MDKRILKIWDECTGKPMASIEP-TSDLNDFCFV  322 (703)
T ss_pred             eccCCcEEEEEcccCCceeecccCCccceeeecccccC-CCceEEe-cchHHhhhcccccCCceeeccc-cCCcCceeee
Confidence            9999999999999888766444322  34455554432 2334444 3456889999999998777764 3448899999


Q ss_pred             cCCCeEEEEeeCCCcEEEEEccC
Q 013274          200 TSSEWILVTGGCDGAIRFWDIRR  222 (446)
Q Consensus       200 ~~~~~~l~S~s~Dg~I~iWd~~~  222 (446)
                      |++. ++.++-.++.|..|=+..
T Consensus       323 p~sG-m~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  323 PGSG-MFFTANESSKMHTYYIPS  344 (703)
T ss_pred             cCCc-eEEEecCCCcceeEEccc
Confidence            9887 567888888887775543

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.49  E-value=8.5e-07  Score=94.81  Aligned_cols=156  Identities=17%  Similarity=0.348  Sum_probs=104.1

Q ss_pred             CCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEE
Q 013274           40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF  119 (446)
Q Consensus        40 ~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l  119 (446)
                      +.|-..|.++.=.|. ..+-+|||.||+|++|.-..+..            |...  .+ .|. ..|+.+.+.. .|..+
T Consensus      2205 k~~v~~v~r~~sHp~-~~~Yltgs~dgsv~~~~w~~~~~------------v~~~--rt-~g~-s~vtr~~f~~-qGnk~ 2266 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPS-DPYYLTGSQDGSVRMFEWGHGQQ------------VVCF--RT-AGN-SRVTRSRFNH-QGNKF 2266 (2439)
T ss_pred             ecccCceeeecCCCC-CceEEecCCCceEEEEeccCCCe------------EEEe--ec-cCc-chhhhhhhcc-cCCce
Confidence            334456667766664 45778999999999998654321            1111  00 133 5566666654 67788


Q ss_pred             EEEeCCCeEEEEECCCCeeeEEEecCCc-eEEeeeccCCCCceEEEEe---eCCCcEEEEeCCCC-c--eeeeeeCCCCC
Q 013274          120 VTGSYDHYVKVWDTNCTRVVMNFKMPGK-VYRTAMSPLAASHMLIAAG---TEDVQVRLCDIASG-A--ISQTLSGHRDG  192 (446)
Q Consensus       120 ~s~s~D~~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lasg---s~d~~v~vwd~~~~-~--~~~~l~~h~~~  192 (446)
                      ..+..||.+-+|.+. .++....+++.. ...+.|..     .+++++   +.++++.+||..-. .  ++.  ..|.+.
T Consensus      2267 ~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~-----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~g 2338 (2439)
T KOG1064|consen 2267 GIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG-----SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGG 2338 (2439)
T ss_pred             eeeccCCceeecccC-CcceeccccCCccccceeeee-----hhhhccccCCCCCcccchhcccCcccceee--eecCCC
Confidence            889999999999986 444444444332 12222221     234443   45789999997533 2  333  679999


Q ss_pred             eEEEEEecCCCeEEEEeeCCCcEEEEEccC
Q 013274          193 IMTVEWSTSSEWILVTGGCDGAIRFWDIRR  222 (446)
Q Consensus       193 v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~  222 (446)
                      ++++++.|..+ +|+||+.+|.|++||+|.
T Consensus      2339 aT~l~~~P~~q-llisggr~G~v~l~D~rq 2367 (2439)
T KOG1064|consen 2339 ATVLAYAPKHQ-LLISGGRKGEVCLFDIRQ 2367 (2439)
T ss_pred             ceEEEEcCcce-EEEecCCcCcEEEeehHH
Confidence            99999999877 589999999999999985

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.46  E-value=9.6e-07  Score=76.41  Aligned_cols=209  Identities=13%  Similarity=0.130  Sum_probs=113.6

Q ss_pred             eeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCC
Q 013274           46 INSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYD  125 (446)
Q Consensus        46 v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D  125 (446)
                      |..+.|+  ....|+++-.++.+...+.-++.+........+..+...+......+..      ......+..++++..|
T Consensus        39 ~~~~~~v--~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~------~~~s~~~t~V~~~~~d  110 (319)
T KOG4714|consen   39 LSKVSLS--AEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPN------DACTMTDNRVCIGYAD  110 (319)
T ss_pred             EEEeech--hhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCc------ccccccCCceEecCCC
Confidence            5566664  3456777777777766655443322111111112222222211111111      1111124578999999


Q ss_pred             CeEEEEECCCCeee-EEEec-CCceEEeeeccCCCCceEEEEee-----CCCcEEEEeCCCCceeeeeeCCCCCeEEEEE
Q 013274          126 HYVKVWDTNCTRVV-MNFKM-PGKVYRTAMSPLAASHMLIAAGT-----EDVQVRLCDIASGAISQTLSGHRDGIMTVEW  198 (446)
Q Consensus       126 ~~i~iWd~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~lasgs-----~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~  198 (446)
                      +.+-+.+.+.-..+ .+... +....+.....   -..++.++.     .-+..++|+++..+....-.---+.|.+++-
T Consensus       111 g~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~---~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~  187 (319)
T KOG4714|consen  111 GSLAVFSTDKDLALMSRIPSIHSGSASRKICR---HGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCS  187 (319)
T ss_pred             ceEEEEechHHHhhhhhcccccccccccceee---cccEEecCCcceEeeccceeeecccccccccccccccccchhhhC
Confidence            99999987641111 11100 00000001100   012233321     1235666766544322111112234888888


Q ss_pred             ecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceee
Q 013274          199 STSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQ  278 (446)
Q Consensus       199 s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (446)
                      .|..+.++++|+.||.+.+||.|+....                                                    
T Consensus       188 hp~qq~~v~cgt~dg~~~l~d~rn~~~p----------------------------------------------------  215 (319)
T KOG4714|consen  188 HPAQQHLVCCGTDDGIVGLWDARNVAMP----------------------------------------------------  215 (319)
T ss_pred             CcccccEEEEecCCCeEEEEEcccccch----------------------------------------------------
Confidence            9988888899999999999999863100                                                    


Q ss_pred             cccceeecCCccccccCCCcccccccccccccCeEEEEEccC-CCEEEEeecCCcEEEEecCc
Q 013274          279 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED-GMYLLSAGSDSRIRLWDVES  340 (446)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~d-g~~l~sgs~D~~i~lWd~~~  340 (446)
                                             ...+.+|..++..+-|+|. +..|.++++||.+.-||..+
T Consensus       216 -----------------------~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  216 -----------------------VSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             -----------------------HHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence                                   0013578889999999984 67899999999999999775

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.43  E-value=6.1e-07  Score=85.20  Aligned_cols=174  Identities=18%  Similarity=0.255  Sum_probs=115.4

Q ss_pred             eeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcC
Q 013274          183 SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVK  262 (446)
Q Consensus       183 ~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (446)
                      +..+.||+..|.++.--.+ ++-++|++.|++|++|.++..+.         .++                         
T Consensus       728 L~nf~GH~~~iRai~AidN-ENSFiSASkDKTVKLWSik~EgD---------~~~-------------------------  772 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDN-ENSFISASKDKTVKLWSIKPEGD---------EIG-------------------------  772 (1034)
T ss_pred             eecccCcHHHhHHHHhccc-ccceeeccCCceEEEEEeccccC---------ccc-------------------------
Confidence            4567899999998875433 34579999999999999874210         000                         


Q ss_pred             CCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCc
Q 013274          263 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR  342 (446)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~  342 (446)
                                                         .-.......+|..+|..+.|-.+-+++++  -|+-|++||..-++
T Consensus       773 -----------------------------------tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlWDPFigr  815 (1034)
T KOG4190|consen  773 -----------------------------------TSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLWDPFIGR  815 (1034)
T ss_pred             -----------------------------------cceeeeEhhhccCcccceeeeeccceeee--ccCcceeecccccc
Confidence                                               00011124578889999999999999876  48889999988765


Q ss_pred             eeeeeeeEEEeecCCCeEEEEc-CCCcEEEEeCC--CceEEEEeecCceEEEe-----cccccceEEEEEcCCCCEEEEe
Q 013274          343 NTLVNFETVRLQTSKPIQLATT-QDPAVVFVPCM--TAVKAFDIWSGKTCLTF-----RGHYEYVNCCCFSSQDQELYTG  414 (446)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~d~~~~~~~~~l-----~gH~~~v~~~~fSpd~~~lvtg  414 (446)
                      .. .+.+....+.......+.. -+..++..+|.  .+++.+|...++-...+     ++-..-+.|++..|.|.+++.+
T Consensus       816 ~L-aq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~  894 (1034)
T KOG4190|consen  816 LL-AQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAA  894 (1034)
T ss_pred             hh-HhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHH
Confidence            32 2122222222122222222 24444444433  57899998766544433     4556778899999999999999


Q ss_pred             eCCCcEEEeCCCCCC
Q 013274          415 GNDRQILVWCPSRHI  429 (446)
Q Consensus       415 s~D~~v~vW~~~~~~  429 (446)
                      =..|+|.+.|..++.
T Consensus       895 LSnGci~~LDaR~G~  909 (1034)
T KOG4190|consen  895 LSNGCIAILDARNGK  909 (1034)
T ss_pred             hcCCcEEEEecCCCc
Confidence            999999888877654

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.39  E-value=7.6e-05  Score=73.53  Aligned_cols=171  Identities=16%  Similarity=0.197  Sum_probs=110.3

Q ss_pred             CCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccc-cceEEeccccccCccccEeEEEEeecCCcEE
Q 013274           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKH-RSVFVVDKQHEHGHKYAISSAIWYPVDTGLF  119 (446)
Q Consensus        41 ~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l  119 (446)
                      |.....+++.|+. +..||+.|+.||.++|-.+.+.+.-..   ..+. ...-++..+++.||+..|.-+.|.. +.+.|
T Consensus        12 PnnvkL~c~~WNk-e~gyIAcgG~dGlLKVlKl~t~t~d~~---~~glaa~snLsmNQtLeGH~~sV~vvTWNe-~~QKL   86 (1189)
T KOG2041|consen   12 PNNVKLHCAEWNK-ESGYIACGGADGLLKVLKLGTDTTDLN---KSGLAAASNLSMNQTLEGHNASVMVVTWNE-NNQKL   86 (1189)
T ss_pred             CCCceEEEEEEcc-cCCeEEeccccceeEEEEccccCCccc---ccccccccccchhhhhccCcceEEEEEecc-ccccc
Confidence            5567789999985 567999999999999999876543111   0010 1111234577899999999888876 56788


Q ss_pred             EEEeCCCeEEEEECCCCeeeEEEe---cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCce-eeeeeCCCCCeEE
Q 013274          120 VTGSYDHYVKVWDTNCTRVVMNFK---MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI-SQTLSGHRDGIMT  195 (446)
Q Consensus       120 ~s~s~D~~i~iWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~-~~~l~~h~~~v~s  195 (446)
                      .|...+|-|.+|=+-.++......   -.+.+.++++..++   ..++....||.|.+=.++.+.. -+.+++.  -...
T Consensus        87 TtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG---~kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~h  161 (1189)
T KOG2041|consen   87 TTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDG---TKICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAH  161 (1189)
T ss_pred             cccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCC---cEEEEEEccCCEEEEeeccceecchhcchh--eccc
Confidence            889999999999775443211110   11224455555433   3456666677776666554432 2344432  2246


Q ss_pred             EEEecCCCeEEEEeeCCCcEEEEEccC
Q 013274          196 VEWSTSSEWILVTGGCDGAIRFWDIRR  222 (446)
Q Consensus       196 v~~s~~~~~~l~S~s~Dg~I~iWd~~~  222 (446)
                      +.|++|.+. +.-+-..|.+.+||...
T Consensus       162 v~ws~D~~~-~Lf~~ange~hlydnqg  187 (1189)
T KOG2041|consen  162 VLWSEDLEQ-ALFKKANGETHLYDNQG  187 (1189)
T ss_pred             eeecccHHH-HHhhhcCCcEEEecccc
Confidence            789999875 44566779999999653

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.37  E-value=7e-05  Score=65.45  Aligned_cols=228  Identities=8%  Similarity=0.052  Sum_probs=134.8

Q ss_pred             CcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccC-CCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeE
Q 013274          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPL-AASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM  194 (446)
Q Consensus       116 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~  194 (446)
                      -.+||.||.-|...+|...+.+..... +..+...+.+... ...+.-+..++.|+++++.+++-+.....+.-.+-.+.
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~~-cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n  162 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLYQ-CDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN  162 (344)
T ss_pred             ccEEEeccccceeeeecccCcccceee-ecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence            358999999999999998865543322 2222221111110 00122355667899999999876654444432223478


Q ss_pred             EEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCC
Q 013274          195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGN  274 (446)
Q Consensus       195 sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (446)
                      ++.++++++| +++.+....|-+|.+......-.                                              
T Consensus       163 s~~~snd~~~-~~~Vgds~~Vf~y~id~~sey~~----------------------------------------------  195 (344)
T KOG4532|consen  163 SLHYSNDPSW-GSSVGDSRRVFRYAIDDESEYIE----------------------------------------------  195 (344)
T ss_pred             eeEEcCCCce-EEEecCCCcceEEEeCCccceee----------------------------------------------
Confidence            9999999987 67888778888887764321000                                              


Q ss_pred             ceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEee
Q 013274          275 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQ  354 (446)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~  354 (446)
                              ++        ...        ....|   =-+..|+.....+|++..||++.|||++.....+......+..
T Consensus       196 --------~~--------~~a--------~t~D~---gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~  248 (344)
T KOG4532|consen  196 --------NI--------YEA--------PTSDH---GFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPH  248 (344)
T ss_pred             --------ee--------Eec--------ccCCC---ceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCC
Confidence                    00        000        00111   2345788888899999999999999998754333222221222


Q ss_pred             cCCCeE-EEEcCCC---cEEEEeCCCceEEEEeecCceEE-------Eecccc-cceEEEEEcCCCCEEEEeeCCC
Q 013274          355 TSKPIQ-LATTQDP---AVVFVPCMTAVKAFDIWSGKTCL-------TFRGHY-EYVNCCCFSSQDQELYTGGNDR  418 (446)
Q Consensus       355 ~~~~~~-~~~~~~~---~~~~~~~~~~~~~~d~~~~~~~~-------~l~gH~-~~v~~~~fSpd~~~lvtgs~D~  418 (446)
                      .....+ ..|++.+   .++++...+.+.+.|+.+++...       .++.|. ..|..-.|+.++.-+...+++.
T Consensus       249 hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~  324 (344)
T KOG4532|consen  249 HNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQ  324 (344)
T ss_pred             CCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccchh
Confidence            223333 3344322   23344455678899988776443       234443 4488888888887777666653

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.34  E-value=0.00018  Score=64.82  Aligned_cols=220  Identities=13%  Similarity=0.114  Sum_probs=123.2

Q ss_pred             CCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCC
Q 013274          124 YDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSE  203 (446)
Q Consensus       124 ~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~  203 (446)
                      ++++|..||..+++.+....+..........+.. ....+.+++.++.+..||..+|+.+..+.- .+++.......++ 
T Consensus         1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~-   77 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVP-DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVVDGG-   77 (238)
T ss_dssp             -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE-ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEEETT-
T ss_pred             CCCEEEEEECCCCCEEEEEECCCCCCCccceEEE-eCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeeeccc-
Confidence            4689999999999998888763211111111111 122455667899999999999998877664 2222111122233 


Q ss_pred             eEEEEeeCCCcEEEEEccCCceeEEe-ecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccc
Q 013274          204 WILVTGGCDGAIRFWDIRRAGCFRVL-DQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVG  282 (446)
Q Consensus       204 ~~l~S~s~Dg~I~iWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (446)
                      . ++.++.|+.+..+|+++++..-.+ ......                                               
T Consensus        78 ~-v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~-----------------------------------------------  109 (238)
T PF13360_consen   78 R-VYVGTSDGSLYALDAKTGKVLWSIYLTSSPP-----------------------------------------------  109 (238)
T ss_dssp             E-EEEEETTSEEEEEETTTSCEEEEEEE-SSCT-----------------------------------------------
T ss_pred             c-cccccceeeeEecccCCcceeeeeccccccc-----------------------------------------------
Confidence            3 345567889999998887654331 100000                                               


Q ss_pred             eeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCC-----
Q 013274          283 RIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK-----  357 (446)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~-----  357 (446)
                                             ..   ....+.+..++..++.+..++.|..+|+++++.... +   ......     
T Consensus       110 -----------------------~~---~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~-~---~~~~~~~~~~~  159 (238)
T PF13360_consen  110 -----------------------AG---VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWK-Y---PVGEPRGSSPI  159 (238)
T ss_dssp             -----------------------CS---TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEE-E---ESSTT-SS--E
T ss_pred             -----------------------cc---cccccCceEecCEEEEEeccCcEEEEecCCCcEEEE-e---ecCCCCCCcce
Confidence                                   00   001111222377777788899999999999864211 1   111100     


Q ss_pred             ------CeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCC
Q 013274          358 ------PIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI  429 (446)
Q Consensus       358 ------~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~  429 (446)
                            ...+.. .++ .++.... ..+..+|+.+++.+-...  ...+..+ ..+++..|+.++.|+.|..||+.+++
T Consensus       160 ~~~~~~~~~~~~-~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~  233 (238)
T PF13360_consen  160 SSFSDINGSPVI-SDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGK  233 (238)
T ss_dssp             EEETTEEEEEEC-CTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTE
T ss_pred             eeecccccceEE-ECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCC
Confidence                  011222 233 4554443 333444888887543222  2222221 45778888888899999999998764

...

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.33  E-value=6.8e-07  Score=89.36  Aligned_cols=155  Identities=20%  Similarity=0.236  Sum_probs=99.4

Q ss_pred             eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (446)
Q Consensus        39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~  118 (446)
                      +.-|+..-+|++|+. +.++|+.|+..|.|+++|+.+|....                 +..+|..+|+-+.-+ .++..
T Consensus      1097 frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~-----------------s~ncH~SavT~vePs-~dgs~ 1157 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEE-----------------SVNCHQSAVTLVEPS-VDGST 1157 (1516)
T ss_pred             hhccccceeeEEeec-CCceEEeeeccceEEEEEccCccccc-----------------ccccccccccccccc-CCcce
Confidence            556888899999985 67899999999999999998876421                 234788877755443 35555


Q ss_pred             EEE-EeCCC-eEEEEECCC-CeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeee-eeC---CCC
Q 013274          119 FVT-GSYDH-YVKVWDTNC-TRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT-LSG---HRD  191 (446)
Q Consensus       119 l~s-~s~D~-~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~-l~~---h~~  191 (446)
                      +++ ++... -..+|++.. +.....|...   .++.|+...   ..-+.|+....+.+||++++....+ |.+   .+-
T Consensus      1158 ~Ltsss~S~PlsaLW~~~s~~~~~Hsf~ed---~~vkFsn~~---q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y 1231 (1516)
T KOG1832|consen 1158 QLTSSSSSSPLSALWDASSTGGPRHSFDED---KAVKFSNSL---QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSY 1231 (1516)
T ss_pred             eeeeccccCchHHHhccccccCcccccccc---ceeehhhhH---HHHHhcccccceEEEecccCcHHHHhcCcchhhhh
Confidence            544 44443 578999854 3334444322   123344321   1223445556799999999976655 322   222


Q ss_pred             CeEEEEEecCCCeEEEEeeCCCcEEEEEccCCc
Q 013274          192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG  224 (446)
Q Consensus       192 ~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~  224 (446)
                      .-..+.|+|.+..+|    +||  .+||.|...
T Consensus      1232 ~~n~a~FsP~D~LIl----ndG--vLWDvR~~~ 1258 (1516)
T KOG1832|consen 1232 SNNLAHFSPCDTLIL----NDG--VLWDVRIPE 1258 (1516)
T ss_pred             hccccccCCCcceEe----eCc--eeeeeccHH
Confidence            236788999988654    355  589998653

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.29  E-value=0.00037  Score=68.23  Aligned_cols=109  Identities=10%  Similarity=0.077  Sum_probs=64.9

Q ss_pred             EeEEEEeecCCcE-EEEEeC---CCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeC--CCcEEEEeCCC
Q 013274          106 ISSAIWYPVDTGL-FVTGSY---DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTE--DVQVRLCDIAS  179 (446)
Q Consensus       106 V~~~~~~~~~~~~-l~s~s~---D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~--d~~v~vwd~~~  179 (446)
                      .....|+| +++. ++..+.   +..|.++|+.+++...-....+......++|++.  .++++.+.  +..|.++|+.+
T Consensus       190 ~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~--~la~~~~~~g~~~Iy~~dl~~  266 (419)
T PRK04043        190 NIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGS--KLLLTMAPKGQPDIYLYDTNT  266 (419)
T ss_pred             eEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCC--EEEEEEccCCCcEEEEEECCC
Confidence            34556776 6663 554343   3568888998876554434445444556777543  34444333  45788889988


Q ss_pred             CceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEE
Q 013274          180 GAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFW  218 (446)
Q Consensus       180 ~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iW  218 (446)
                      +.. +.+..+........|+|+++.++.+....+.-.||
T Consensus       267 g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy  304 (419)
T PRK04043        267 KTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIF  304 (419)
T ss_pred             CcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEE
Confidence            763 34444444344567999999876666555543333

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.28  E-value=0.00084  Score=61.42  Aligned_cols=233  Identities=16%  Similarity=0.243  Sum_probs=130.8

Q ss_pred             CCeEEEEECCCCee----eEEEecCCceEEeeeccCCCCceEEEEee-C--CCcEEEEeCCC--Ccee--eeeeCCCCCe
Q 013274          125 DHYVKVWDTNCTRV----VMNFKMPGKVYRTAMSPLAASHMLIAAGT-E--DVQVRLCDIAS--GAIS--QTLSGHRDGI  193 (446)
Q Consensus       125 D~~i~iWd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~lasgs-~--d~~v~vwd~~~--~~~~--~~l~~h~~~v  193 (446)
                      +.-|.+|++++.+-    +......+....+++.+.   ...|.++- .  ++.|..|.++.  |.+-  ........+-
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~---~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p   91 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPD---QRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPP   91 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCC---CCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCC
Confidence            56799999874322    222222344555666653   33344442 2  56677666654  5432  1212222333


Q ss_pred             EEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCC
Q 013274          194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANG  273 (446)
Q Consensus       194 ~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (446)
                      +.|++++++++++++--.-|.|.++-++..+.+..........+.                                   
T Consensus        92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~-----------------------------------  136 (346)
T COG2706          92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGS-----------------------------------  136 (346)
T ss_pred             eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCC-----------------------------------
Confidence            889999999876555445688999987653221110000000000                                   


Q ss_pred             CceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEe--ecCCcEEEEecCcCceeeeeeeEE
Q 013274          274 NGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSA--GSDSRIRLWDVESGRNTLVNFETV  351 (446)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sg--s~D~~i~lWd~~~~~~~~~~~~~~  351 (446)
                                    +     .+    ..  ....|   +....|.|++++|++.  +.| +|.+|++..++-.......+
T Consensus       137 --------------~-----p~----~r--Q~~~h---~H~a~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L~~~~~~~v  187 (346)
T COG2706         137 --------------G-----PH----ER--QESPH---VHSANFTPDGRYLVVPDLGTD-RIFLYDLDDGKLTPADPAEV  187 (346)
T ss_pred             --------------C-----CC----cc--ccCCc---cceeeeCCCCCEEEEeecCCc-eEEEEEcccCcccccccccc
Confidence                          0     00    00  00112   5566799999998876  556 49999998765322211111


Q ss_pred             EeecCCCeEEEEcCCCcEEEEeC--CCceEEEEeecC-ceEEEeccc---------ccceEEEEEcCCCCEEEEeeC-CC
Q 013274          352 RLQTSKPIQLATTQDPAVVFVPC--MTAVKAFDIWSG-KTCLTFRGH---------YEYVNCCCFSSQDQELYTGGN-DR  418 (446)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~-~~~~~l~gH---------~~~v~~~~fSpd~~~lvtgs~-D~  418 (446)
                       .....+=.++|.|++.+.++.+  .+.|.+|.+... ..+..++.+         ..+...+.+||||++|+.+-. ..
T Consensus       188 -~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~d  266 (346)
T COG2706         188 -KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHD  266 (346)
T ss_pred             -CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCC
Confidence             1123556789999999887765  468899988763 223333322         345778999999999997655 23


Q ss_pred             cEEEeCC
Q 013274          419 QILVWCP  425 (446)
Q Consensus       419 ~v~vW~~  425 (446)
                      .|-++.+
T Consensus       267 sI~~f~V  273 (346)
T COG2706         267 SIAVFSV  273 (346)
T ss_pred             eEEEEEE
Confidence            5666643

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.28  E-value=0.00041  Score=65.99  Aligned_cols=324  Identities=16%  Similarity=0.162  Sum_probs=169.3

Q ss_pred             CccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEE
Q 013274           42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT  121 (446)
Q Consensus        42 H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s  121 (446)
                      -.-++..+++|| .|.+|++.- -..|.+|........           +.       .-|. .|.-+-++| ++++|.|
T Consensus        31 ~~~p~~~~~~SP-~G~~l~~~~-~~~V~~~~g~~~~~l-----------~~-------~~~~-~V~~~~fSP-~~kYL~t   88 (561)
T COG5354          31 ENWPVAYVSESP-LGTYLFSEH-AAGVECWGGPSKAKL-----------VR-------FRHP-DVKYLDFSP-NEKYLVT   88 (561)
T ss_pred             cCcchhheeecC-cchheehhh-ccceEEccccchhhe-----------ee-------eecC-CceecccCc-ccceeee
Confidence            446788999997 578887653 345999986543210           00       0121 233444554 5667766


Q ss_pred             EeCC---------------CeEEEEECCCCeeeEEEecCCceE----EeeeccCCCCceEEEEeeCCCcEEEEeCCCCce
Q 013274          122 GSYD---------------HYVKVWDTNCTRVVMNFKMPGKVY----RTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI  182 (446)
Q Consensus       122 ~s~D---------------~~i~iWd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~  182 (446)
                      =++-               ..+.+||..++..+..+......+    -+.++.++   .++|-- ....++|+++ ++..
T Consensus        89 w~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D---~y~ARv-v~~sl~i~e~-t~n~  163 (561)
T COG5354          89 WSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDD---KYVARV-VGSSLYIHEI-TDNI  163 (561)
T ss_pred             eccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecc---hhhhhh-ccCeEEEEec-CCcc
Confidence            5543               359999999999988876543321    12333322   222211 2346999997 4321


Q ss_pred             ----eeeeeCCCCCeEEEEEecCCCe-EEE-----EeeCCCcEEEEEccCCceeEEe---ecccccccCCCcccccceee
Q 013274          183 ----SQTLSGHRDGIMTVEWSTSSEW-ILV-----TGGCDGAIRFWDIRRAGCFRVL---DQSQSQLGRRPPLLKRKVSI  249 (446)
Q Consensus       183 ----~~~l~~h~~~v~sv~~s~~~~~-~l~-----S~s~Dg~I~iWd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  249 (446)
                          ...++  ...+..-.|+|.+.. .|+     ....++.+++|.+..+..+..-   +...-++  .... .....+
T Consensus       164 ~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qL--kW~~-~g~~ll  238 (561)
T COG5354         164 EEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQL--KWQV-LGKYLL  238 (561)
T ss_pred             ccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEE--EEec-CCceEE
Confidence                22222  345677778876321 223     2356778888888755433221   1000000  0000 000000


Q ss_pred             ccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccc-cccccCeEEEEEccCCCE--EEE
Q 013274          250 SKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRA-TAHYGAVTGLKVTEDGMY--LLS  326 (446)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~fs~dg~~--l~s  326 (446)
                      ....+.         ...+.++.+.    +...-+.        +.    ....+. ..-.++|...+|.|.+..  +++
T Consensus       239 ~l~~t~---------~ksnKsyfge----snLyl~~--------~~----e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~  293 (561)
T COG5354         239 VLVMTH---------TKSNKSYFGE----SNLYLLR--------IT----ERSIPVEKDLKDPVHDFTWEPLSSRFAVIS  293 (561)
T ss_pred             EEEEEe---------eecccceecc----ceEEEEe--------ec----ccccceeccccccceeeeecccCCceeEEe
Confidence            000000         0000000000    0000000        00    000111 144688999999998875  456


Q ss_pred             eecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC----CceEEEEeecCceEE-EecccccceEE
Q 013274          327 AGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM----TAVKAFDIWSGKTCL-TFRGHYEYVNC  401 (446)
Q Consensus       327 gs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~d~~~~~~~~-~l~gH~~~v~~  401 (446)
                      |-.+..+-++|+...   +. +.   +.......+.|+|....++.++-    ..+.+||...+-.+. .+.|-.  ..-
T Consensus       294 g~~pa~~s~~~lr~N---l~-~~---~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~  364 (561)
T COG5354         294 GYMPASVSVFDLRGN---LR-FY---FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSY  364 (561)
T ss_pred             cccccceeecccccc---eE-Ee---cCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceE
Confidence            678999999998764   11 10   01112334567777777766543    367888876665444 555443  345


Q ss_pred             EEEcCCCCEEEEe------eCCCcEEEeCCCCCCCC
Q 013274          402 CCFSSQDQELYTG------GNDRQILVWCPSRHISD  431 (446)
Q Consensus       402 ~~fSpd~~~lvtg------s~D~~v~vW~~~~~~~~  431 (446)
                      +.||||++++.+.      -.|..|+||+..+....
T Consensus       365 ~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f  400 (561)
T COG5354         365 CDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF  400 (561)
T ss_pred             eeccCCceEEEecCCCcccccCcceEEEEecCchhh
Confidence            7899999998753      23789999998766543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.25  E-value=4.4e-06  Score=75.19  Aligned_cols=100  Identities=17%  Similarity=0.305  Sum_probs=68.8

Q ss_pred             EEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC-----ceeeeeeCCCCCeE
Q 013274          120 VTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-----AISQTLSGHRDGIM  194 (446)
Q Consensus       120 ~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~-----~~~~~l~~h~~~v~  194 (446)
                      ++.|.+-.|-+-|++++-.. .|...+.++...|..   ...++..|+.+|.|...|++.+     .+...+. |...|+
T Consensus       228 fs~G~sqqv~L~nvetg~~q-sf~sksDVfAlQf~~---s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvt  302 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQ-SFQSKSDVFALQFAG---SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVT  302 (425)
T ss_pred             ecccccceeEEEEeeccccc-ccccchhHHHHHhcc---cCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchh
Confidence            55566667777777665432 222333444444443   3458999999999999999875     2334443 888999


Q ss_pred             EEEEec-CCCeEEEEeeCCCcEEEEEccCCce
Q 013274          195 TVEWST-SSEWILVTGGCDGAIRFWDIRRAGC  225 (446)
Q Consensus       195 sv~~s~-~~~~~l~S~s~Dg~I~iWd~~~~~~  225 (446)
                      ++..-. +++. |++.+.+|+|++||+|.-+|
T Consensus       303 slq~Lq~s~q~-LmaS~M~gkikLyD~R~~K~  333 (425)
T KOG2695|consen  303 SLQILQFSQQK-LMASDMTGKIKLYDLRATKC  333 (425)
T ss_pred             hhhhhccccce-EeeccCcCceeEeeehhhhc
Confidence            988655 5554 67888999999999987655

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.24  E-value=3.2e-05  Score=68.86  Aligned_cols=172  Identities=14%  Similarity=0.294  Sum_probs=95.7

Q ss_pred             ccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCc--CCCCCCccccccceEEecccccc--CccccEeEEEEeec-CCc
Q 013274           43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRAT--DYEGGGHIAKHRSVFVVDKQHEH--GHKYAISSAIWYPV-DTG  117 (446)
Q Consensus        43 ~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--gh~~~V~~~~~~~~-~~~  117 (446)
                      ...|+++-|.. .|.||++|...|.|.++.-+.-.  .++.-.+..++..-+    ..+.  .-...|..+.|+.. ...
T Consensus        26 ad~ItaVefd~-tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EF----DYLkSleieEKin~I~w~~~t~r~  100 (460)
T COG5170          26 ADKITAVEFDE-TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEF----DYLKSLEIEEKINAIEWFDDTGRN  100 (460)
T ss_pred             cceeeEEEecc-ccceEeecCCCceEEEeecccccccchhhhhhhcccccch----hhhhhccHHHHhhheeeecCCCcc
Confidence            46789999975 57899999999999999654321  111100111111000    0000  01123555666643 234


Q ss_pred             EEEEEeCCCeEEEEECCCCe-------------------e------eEEEecCC-------------------ceEEeee
Q 013274          118 LFVTGSYDHYVKVWDTNCTR-------------------V------VMNFKMPG-------------------KVYRTAM  153 (446)
Q Consensus       118 ~l~s~s~D~~i~iWd~~~~~-------------------~------~~~~~~~~-------------------~~~~~~~  153 (446)
                      .++-...|++|++|.+-...                   +      +..-++..                   +++++++
T Consensus       101 hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~  180 (460)
T COG5170         101 HFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISF  180 (460)
T ss_pred             eEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeee
Confidence            67777889999999863210                   0      00000000                   1222222


Q ss_pred             ccCCCCceEEEEeeCCCcEEEEeCCCCc---eeeeeeCCC-----CCeEEEEEecCCCeEEEEeeCCCcEEEEEccCC
Q 013274          154 SPLAASHMLIAAGTEDVQVRLCDIASGA---ISQTLSGHR-----DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA  223 (446)
Q Consensus       154 ~~~~~~~~~lasgs~d~~v~vwd~~~~~---~~~~l~~h~-----~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~  223 (446)
                      -.   +...+++ ..|-.|-+|+++-..   -+.-++.|.     .-|++..|+|....++.-.+.-|.|++-|+|+.
T Consensus       181 Ns---D~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~  254 (460)
T COG5170         181 NS---DKETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQS  254 (460)
T ss_pred             cC---chheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhh
Confidence            22   2223333 457788999986442   233344443     347888999987766777777899999999853

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.24  E-value=0.00074  Score=64.99  Aligned_cols=191  Identities=18%  Similarity=0.266  Sum_probs=109.9

Q ss_pred             hhhhhhhhcccceeccccceeEe-CCCccceeEEEeecC-CCCEEEE-----eeCCCcEEEEEcccCcCCCCCCcccccc
Q 013274           17 SFANRVKSHRLSTLQLSNYKEIV-SPHKGSINSLQVDLT-EERYLLS-----GASDSSVAVYDVQRATDYEGGGHIAKHR   89 (446)
Q Consensus        17 ~~~~~~~~~~l~~~~~~~~~~~~-~~H~~~v~~l~~s~~-~~~~l~s-----~s~Dg~i~lWd~~~~~~~~~~~~~~~~~   89 (446)
                      .+++|+-...+.-++...++.+. +=|...|+.+.+||. ...++|+     +|.=+.|+||...........    ..+
T Consensus       138 sl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~----a~k  213 (566)
T KOG2315|consen  138 SLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPV----ANK  213 (566)
T ss_pred             hhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchh----hhc
Confidence            34444444455555555554442 246778999999875 3345554     344567999976421100000    000


Q ss_pred             ceEEeccccccCccccEeEEEEeecCCcEE--EEEeCCC---------eEEEEECCCCeeeEEEecCCceEEeeeccCCC
Q 013274           90 SVFVVDKQHEHGHKYAISSAIWYPVDTGLF--VTGSYDH---------YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAA  158 (446)
Q Consensus        90 ~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l--~s~s~D~---------~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (446)
                      ..+.         ...| .+.|......+|  ++..-|+         ++.+.++....+...+.-.|+++++.|.+.+.
T Consensus       214 sFFk---------adkv-qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~  283 (566)
T KOG2315|consen  214 SFFK---------ADKV-QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGR  283 (566)
T ss_pred             cccc---------ccee-EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCC
Confidence            0000         0111 234443333333  2323333         57777777555555555678999999998653


Q ss_pred             CceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEe--eCCCcEEEEEccCCce
Q 013274          159 SHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTG--GCDGAIRFWDIRRAGC  225 (446)
Q Consensus       159 ~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~--s~Dg~I~iWd~~~~~~  225 (446)
                       ..-++.|-.-..+.|+|++.. ++..+  .+++=.++-|+|.++.++++|  .--|.|-+||..+.++
T Consensus       284 -EF~VvyGfMPAkvtifnlr~~-~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~  348 (566)
T KOG2315|consen  284 -EFAVVYGFMPAKVTIFNLRGK-PVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKL  348 (566)
T ss_pred             -EEEEEEecccceEEEEcCCCC-EeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhh
Confidence             345666777778999998654 44444  346667889999998655443  2348999999876543

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.24  E-value=0.0043  Score=58.64  Aligned_cols=255  Identities=12%  Similarity=0.057  Sum_probs=132.6

Q ss_pred             eecCCCCEEEEee---------CCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEE
Q 013274           51 VDLTEERYLLSGA---------SDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT  121 (446)
Q Consensus        51 ~s~~~~~~l~s~s---------~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s  121 (446)
                      +||++..+.++.+         .+..|.+||+++.+...   .+.      +....+... -.......++| |+++++.
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~---~i~------~p~~p~~~~-~~~~~~~~ls~-dgk~l~V  121 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIA---DIE------LPEGPRFLV-GTYPWMTSLTP-DNKTLLF  121 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEe---EEc------cCCCchhhc-cCccceEEECC-CCCEEEE
Confidence            7875444444445         68899999998765321   000      000000000 00011233444 8888776


Q ss_pred             Ee-C-CCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCC-Ccee-ee---eeCCCCCeE
Q 013274          122 GS-Y-DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS-GAIS-QT---LSGHRDGIM  194 (446)
Q Consensus       122 ~s-~-D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~-~~~~-~~---l~~h~~~v~  194 (446)
                      .- . +..|-+.|+.+++.+..+..++...-...+.   ..  +...|.|+......+++ |+.. ..   +.+-..++.
T Consensus       122 ~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e---~~--~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~  196 (352)
T TIGR02658       122 YQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTAN---DT--FFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLI  196 (352)
T ss_pred             ecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecC---Cc--cEEEeecCceEEEEecCCCceEEeeeeeecCCccccc
Confidence            55 3 7999999999999999888766432222211   11  22334466555544432 2211 11   111001110


Q ss_pred             E-EEEec-CCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccC
Q 013274          195 T-VEWST-SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSAN  272 (446)
Q Consensus       195 s-v~~s~-~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (446)
                      . -.|.+ +++++++|..  |+|.+-|+...+... ...                                         
T Consensus       197 ~rP~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~-~~~-----------------------------------------  232 (352)
T TIGR02658       197 NHPAYSNKSGRLVWPTYT--GKIFQIDLSSGDAKF-LPA-----------------------------------------  232 (352)
T ss_pred             cCCceEcCCCcEEEEecC--CeEEEEecCCCccee-cce-----------------------------------------
Confidence            0 03455 7776555433  999999975432110 000                                         


Q ss_pred             CCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEee----------cCCcEEEEecCcCc
Q 013274          273 GNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG----------SDSRIRLWDVESGR  342 (446)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs----------~D~~i~lWd~~~~~  342 (446)
                               ......+.....+.             .+.+--++++++|++|....          ..+.|.++|..+++
T Consensus       233 ---------~~~~~~~~~~~~wr-------------P~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k  290 (352)
T TIGR02658       233 ---------IEAFTEAEKADGWR-------------PGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK  290 (352)
T ss_pred             ---------eeeccccccccccC-------------CCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe
Confidence                     00000000000001             11233388999998766532          22579999998865


Q ss_pred             eeeeeeeEEEeecCCCeEEEEcCCCc-EEEEeC--CCceEEEEeecCceEEEe
Q 013274          343 NTLVNFETVRLQTSKPIQLATTQDPA-VVFVPC--MTAVKAFDIWSGKTCLTF  392 (446)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~d~~~~~~~~~l  392 (446)
                      ...    .+. -...+..+++++|+. .+++..  .+.+.++|..+++.++++
T Consensus       291 vi~----~i~-vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       291 RLR----KIE-LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             EEE----EEe-CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            321    111 123456789999998 777654  356999999999888776

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.23  E-value=4.9e-06  Score=74.92  Aligned_cols=149  Identities=15%  Similarity=0.158  Sum_probs=102.8

Q ss_pred             EEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCC-
Q 013274           58 YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT-  136 (446)
Q Consensus        58 ~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~-  136 (446)
                      +-++.+.+..|-+-|++++-.                  +.+ +-++.|.+..|.. .+.++..|...|.|...|+..+ 
T Consensus       226 yhfs~G~sqqv~L~nvetg~~------------------qsf-~sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rn  285 (425)
T KOG2695|consen  226 YHFSVGLSQQVLLTNVETGHQ------------------QSF-QSKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRN  285 (425)
T ss_pred             eeecccccceeEEEEeecccc------------------ccc-ccchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecc
Confidence            446777888888888876521                  111 2455666666654 3568999999999999999754 


Q ss_pred             ----eeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCce---eeeeeCCCCCeEEEEE--ecCCCeEEE
Q 013274          137 ----RVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI---SQTLSGHRDGIMTVEW--STSSEWILV  207 (446)
Q Consensus       137 ----~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~---~~~l~~h~~~v~sv~~--s~~~~~~l~  207 (446)
                          -+...+-++..+.++..-.  .+...|.+++.+|.|++||++--++   ++++.||...-.-+-+  .+.. .+++
T Consensus       286 qG~~~~a~rlyh~Ssvtslq~Lq--~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~ee-g~I~  362 (425)
T KOG2695|consen  286 QGNGWCAQRLYHDSSVTSLQILQ--FSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEE-GSIF  362 (425)
T ss_pred             cCCCcceEEEEcCcchhhhhhhc--cccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccccc-ceEE
Confidence                2444455555555444332  2345677778899999999986555   8899999765544433  3333 3577


Q ss_pred             EeeCCCcEEEEEccCCceeEEe
Q 013274          208 TGGCDGAIRFWDIRRAGCFRVL  229 (446)
Q Consensus       208 S~s~Dg~I~iWd~~~~~~~~~~  229 (446)
                      +++.|...|||.++.+..+..+
T Consensus       363 s~GdDcytRiWsl~~ghLl~ti  384 (425)
T KOG2695|consen  363 SVGDDCYTRIWSLDSGHLLCTI  384 (425)
T ss_pred             EccCeeEEEEEecccCceeecc
Confidence            8999999999999987765544

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.16  E-value=0.0019  Score=61.11  Aligned_cols=123  Identities=19%  Similarity=0.259  Sum_probs=94.2

Q ss_pred             CccccEeEEEEeecCCcEEEEEeCCC-eEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCC
Q 013274          101 GHKYAISSAIWYPVDTGLFVTGSYDH-YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS  179 (446)
Q Consensus       101 gh~~~V~~~~~~~~~~~~l~s~s~D~-~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~  179 (446)
                      +|++.|.-..+.. ++.-++.|-.|+ .+-|+|..+++..+....-+.+.++..+++   +..++.+.....+-+.|+++
T Consensus       357 ~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~d---GK~~vvaNdr~el~vididn  432 (668)
T COG4946         357 GKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPD---GKKVVVANDRFELWVIDIDN  432 (668)
T ss_pred             CCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCC---CcEEEEEcCceEEEEEEecC
Confidence            5666676655543 455788888898 999999999887766666678888888874   45678888888899999999


Q ss_pred             CceeeeeeCCCCCeEEEEEecCCCeEEEEeeCC----CcEEEEEccCCceeEE
Q 013274          180 GAISQTLSGHRDGIMTVEWSTSSEWILVTGGCD----GAIRFWDIRRAGCFRV  228 (446)
Q Consensus       180 ~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~D----g~I~iWd~~~~~~~~~  228 (446)
                      ++....=+.-.+-|+...|+|+++|+ |-+=-+    ..|+++|+.+++.+..
T Consensus       433 gnv~~idkS~~~lItdf~~~~nsr~i-AYafP~gy~tq~Iklydm~~~Kiy~v  484 (668)
T COG4946         433 GNVRLIDKSEYGLITDFDWHPNSRWI-AYAFPEGYYTQSIKLYDMDGGKIYDV  484 (668)
T ss_pred             CCeeEecccccceeEEEEEcCCceeE-EEecCcceeeeeEEEEecCCCeEEEe
Confidence            98766656677889999999999874 544333    4699999988775543

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.15  E-value=2.1e-05  Score=69.94  Aligned_cols=121  Identities=17%  Similarity=0.181  Sum_probs=75.8

Q ss_pred             cccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeec----CCCeEEEEcCCCcEE--EEeCCCceE
Q 013274          306 TAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT----SKPIQLATTQDPAVV--FVPCMTAVK  379 (446)
Q Consensus       306 ~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~~~  379 (446)
                      .+|.--|+++.|..|...++|+ .|-+|.+|+++-....+..+......+    ......-+.|....+  ++.+.+.++
T Consensus       169 NaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik  247 (460)
T COG5170         169 NAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK  247 (460)
T ss_pred             ccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence            4677779999999999988875 688999999876432221111100001    111223344443332  334456778


Q ss_pred             EEEeecCce----------------EEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC
Q 013274          380 AFDIWSGKT----------------CLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH  428 (446)
Q Consensus       380 ~~d~~~~~~----------------~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~  428 (446)
                      +-|+....+                +.-|.+-...|.++.||++|+++++-+. -+|+||+..-.
T Consensus       248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~  311 (460)
T COG5170         248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA  311 (460)
T ss_pred             ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccc
Confidence            877753211                1123455678999999999999987654 68999998743

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.13  E-value=0.0028  Score=62.10  Aligned_cols=111  Identities=14%  Similarity=0.135  Sum_probs=64.1

Q ss_pred             eEEEEEccCCCEEE-EeecC--CcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC----CceEEEEee
Q 013274          312 VTGLKVTEDGMYLL-SAGSD--SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM----TAVKAFDIW  384 (446)
Q Consensus       312 v~~l~fs~dg~~l~-sgs~D--~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~d~~  384 (446)
                      .....|+|||+.|+ +.+.+  ..|.++|+.++.....     ...........++||+..++..+.    ..+.+.++.
T Consensus       235 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~L-----T~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~  309 (419)
T PRK04043        235 LVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQI-----TNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLN  309 (419)
T ss_pred             EEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEc-----ccCCCccCccEECCCCCEEEEEECCCCCceEEEEECC
Confidence            44567999998654 33334  4577778877643211     111112334578899876555432    256667777


Q ss_pred             cCceEE-EecccccceEEEEEcCCCCEEEEeeCC---------CcEEEeCCCCCCCC
Q 013274          385 SGKTCL-TFRGHYEYVNCCCFSSQDQELYTGGND---------RQILVWCPSRHISD  431 (446)
Q Consensus       385 ~~~~~~-~l~gH~~~v~~~~fSpd~~~lvtgs~D---------~~v~vW~~~~~~~~  431 (446)
                      +++..+ ++.+..    ...|||||++|+-.+..         ..|.+.+++++...
T Consensus       310 ~g~~~rlt~~g~~----~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~  362 (419)
T PRK04043        310 SGSVEQVVFHGKN----NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR  362 (419)
T ss_pred             CCCeEeCccCCCc----CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE
Confidence            766533 222322    24899999998865543         24666677665433

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.13  E-value=0.003  Score=56.18  Aligned_cols=149  Identities=15%  Similarity=0.192  Sum_probs=79.7

Q ss_pred             EEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeE
Q 013274           49 LQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYV  128 (446)
Q Consensus        49 l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i  128 (446)
                      +..+ ++|++||.- .|..|.|--.+++-..    .+.   .. .+.    ....-.-..++|+| |+.+||-+..-|+|
T Consensus         3 ~~~~-~~Gk~lAi~-qd~~iEiRsa~Ddf~s----i~~---kc-qVp----kD~~PQWRkl~WSp-D~tlLa~a~S~G~i   67 (282)
T PF15492_consen    3 LALS-SDGKLLAIL-QDQCIEIRSAKDDFSS----IIG---KC-QVP----KDPNPQWRKLAWSP-DCTLLAYAESTGTI   67 (282)
T ss_pred             eeec-CCCcEEEEE-eccEEEEEeccCCchh----eeE---EE-ecC----CCCCchheEEEECC-CCcEEEEEcCCCeE
Confidence            3444 467766544 7888888765443110    000   00 000    11112234567876 88899999999999


Q ss_pred             EEEECCCCeeeEEEec----CC----ceEEeeeccCCCCc---eEEEEeeCCCcEEEEeCCCC-----ceee--eeeC-C
Q 013274          129 KVWDTNCTRVVMNFKM----PG----KVYRTAMSPLAASH---MLIAAGTEDVQVRLCDIASG-----AISQ--TLSG-H  189 (446)
Q Consensus       129 ~iWd~~~~~~~~~~~~----~~----~~~~~~~~~~~~~~---~~lasgs~d~~v~vwd~~~~-----~~~~--~l~~-h  189 (446)
                      +++|+... .+..++.    .+    .+..+.|.....+.   .-|+.-..+|.++-|-+..+     ....  .+.. +
T Consensus        68 ~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~y  146 (282)
T PF15492_consen   68 RVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHY  146 (282)
T ss_pred             EEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccC
Confidence            99999753 3333321    11    12222232221111   12333445677766655322     2222  3333 4


Q ss_pred             CCCeEEEEEecCCCeEEEEeeCCC
Q 013274          190 RDGIMTVEWSTSSEWILVTGGCDG  213 (446)
Q Consensus       190 ~~~v~sv~~s~~~~~~l~S~s~Dg  213 (446)
                      ...|.++.++|..+.+++.|+...
T Consensus       147 p~Gi~~~vy~p~h~LLlVgG~~~~  170 (282)
T PF15492_consen  147 PHGINSAVYHPKHRLLLVGGCEQN  170 (282)
T ss_pred             CCceeEEEEcCCCCEEEEeccCCC
Confidence            779999999999886666666544

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.10  E-value=0.0072  Score=54.78  Aligned_cols=218  Identities=19%  Similarity=0.236  Sum_probs=124.4

Q ss_pred             EEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeC
Q 013274          109 AIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG  188 (446)
Q Consensus       109 ~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~  188 (446)
                      ..|.+.++.++++--..+.|..|+..++.... +..++ ...+.+..  .++.++++ .. +.+.++|+.+++....+..
T Consensus         5 p~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~-~~G~~~~~--~~g~l~v~-~~-~~~~~~d~~~g~~~~~~~~   78 (246)
T PF08450_consen    5 PVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG-PNGMAFDR--PDGRLYVA-DS-GGIAVVDPDTGKVTVLADL   78 (246)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS-EEEEEEEC--TTSEEEEE-ET-TCEEEEETTTTEEEEEEEE
T ss_pred             eEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC-CceEEEEc--cCCEEEEE-Ec-CceEEEecCCCcEEEEeec
Confidence            34554467777777778999999998876543 44444 44444442  12334444 33 4456669998864333221


Q ss_pred             -----CCCCeEEEEEecCCCeEEEEeeCC--------CcEEEEEccCCceeEEeecccccccCCCcccccceeecccccc
Q 013274          189 -----HRDGIMTVEWSTSSEWILVTGGCD--------GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSA  255 (446)
Q Consensus       189 -----h~~~v~sv~~s~~~~~~l~S~s~D--------g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (446)
                           .......+++.|++. +.++....        |.|..++.. ++. ..                           
T Consensus        79 ~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-~~---------------------------  128 (246)
T PF08450_consen   79 PDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKV-TV---------------------------  128 (246)
T ss_dssp             ETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEE-EE---------------------------
T ss_pred             cCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeE-EE---------------------------
Confidence                 334567888999887 45554432        223333322 110 00                           


Q ss_pred             CCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEE-EEeecCCcEE
Q 013274          256 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL-LSAGSDSRIR  334 (446)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l-~sgs~D~~i~  334 (446)
                                                                       ........+.|+|+||++.| ++-+..++|.
T Consensus       129 -------------------------------------------------~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~  159 (246)
T PF08450_consen  129 -------------------------------------------------VADGLGFPNGIAFSPDGKTLYVADSFNGRIW  159 (246)
T ss_dssp             -------------------------------------------------EEEEESSEEEEEEETTSSEEEEEETTTTEEE
T ss_pred             -------------------------------------------------EecCcccccceEECCcchheeecccccceeE
Confidence                                                             00112236789999999865 5778888999


Q ss_pred             EEecCcCceeeeeeeE-EEeecC--CCeEEEEcCCCcEEEEe-CCCceEEEEeecCceEEEecccccceEEEEEc-CCCC
Q 013274          335 LWDVESGRNTLVNFET-VRLQTS--KPIQLATTQDPAVVFVP-CMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFS-SQDQ  409 (446)
Q Consensus       335 lWd~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fS-pd~~  409 (446)
                      .+++......+..... ......  .+--++...++.+.++. ....+..++-. |+.+..+..-...+++|+|. ||.+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~  238 (246)
T PF08450_consen  160 RFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGK  238 (246)
T ss_dssp             EEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSS
T ss_pred             EEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCC
Confidence            9998643221111111 111122  24457777777665443 45678888865 88877776666689999994 7755


Q ss_pred             EEE
Q 013274          410 ELY  412 (446)
Q Consensus       410 ~lv  412 (446)
                      .|+
T Consensus       239 ~L~  241 (246)
T PF08450_consen  239 TLY  241 (246)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.06  E-value=0.0062  Score=54.70  Aligned_cols=106  Identities=18%  Similarity=0.247  Sum_probs=71.3

Q ss_pred             CCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeee-eCCCC--
Q 013274          115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL-SGHRD--  191 (446)
Q Consensus       115 ~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l-~~h~~--  191 (446)
                      +++.+++++.++.+..||..+++.+..+.+++.....   +...+ ..++.++.++.++.+|.++|+.++.. .....  
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~---~~~~~-~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~  110 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA---PVVDG-GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA  110 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG---EEEET-TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce---eeecc-cccccccceeeeEecccCCcceeeeecccccccc
Confidence            4567888899999999999999999888875543221   11112 23455557889999999999988874 33211  


Q ss_pred             ---CeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeE
Q 013274          192 ---GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFR  227 (446)
Q Consensus       192 ---~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~  227 (446)
                         ......+.  +.. ++.+..++.|..+|+++++.+-
T Consensus       111 ~~~~~~~~~~~--~~~-~~~~~~~g~l~~~d~~tG~~~w  146 (238)
T PF13360_consen  111 GVRSSSSPAVD--GDR-LYVGTSSGKLVALDPKTGKLLW  146 (238)
T ss_dssp             STB--SEEEEE--TTE-EEEEETCSEEEEEETTTTEEEE
T ss_pred             ccccccCceEe--cCE-EEEEeccCcEEEEecCCCcEEE
Confidence               12233333  444 5667778999999999887543

...

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.05  E-value=2.4e-05  Score=77.22  Aligned_cols=115  Identities=21%  Similarity=0.274  Sum_probs=72.2

Q ss_pred             EeEEEEeecCCcEEEEEeCCCeEEEEECCCC-eeeEEEec--CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC--
Q 013274          106 ISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT-RVVMNFKM--PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG--  180 (446)
Q Consensus       106 V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~--  180 (446)
                      +.++...| .+.-+|.++.-| +.+-|+... .+-+-+.+  +-.+..+.+++.......+++ .....-.+|++...  
T Consensus        27 ~~a~si~p-~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVs-ts~qkaiiwnlA~ss~  103 (1081)
T KOG0309|consen   27 FNAVSINP-SGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVS-TSNQKAIIWNLAKSSS  103 (1081)
T ss_pred             ccceeecc-ccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEe-cCcchhhhhhhhcCCc
Confidence            33445555 455556666655 344455432 22221111  112334555554433334444 44556778998643  


Q ss_pred             -ceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCC
Q 013274          181 -AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA  223 (446)
Q Consensus       181 -~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~  223 (446)
                       ..-..+.||.-.|+.+.|.|..+-++++++.|-.+..||+|..
T Consensus       104 ~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp  147 (1081)
T KOG0309|consen  104 NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP  147 (1081)
T ss_pred             cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCC
Confidence             3345678999999999999999989999999999999999864

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=4.4e-05  Score=71.25  Aligned_cols=220  Identities=18%  Similarity=0.151  Sum_probs=133.1

Q ss_pred             CccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEe----cCCceEEeeeccCCCCceEEEEeeC-CCcEEEE
Q 013274          101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK----MPGKVYRTAMSPLAASHMLIAAGTE-DVQVRLC  175 (446)
Q Consensus       101 gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~lasgs~-d~~v~vw  175 (446)
                      -|...|+-+.  +.-.+++.+++.|+.++.|--..-..+.-..    +.+.+.+++.+   .++.++.+.+. |+.++++
T Consensus         7 mhrd~i~hv~--~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S---~dg~L~~Sv~d~Dhs~Kvf   81 (558)
T KOG0882|consen    7 MHRDVITHVF--PTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVS---YDGWLFRSVEDPDHSVKVF   81 (558)
T ss_pred             cccceeeeEe--eehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhcc---ccceeEeeccCcccceeEE
Confidence            3565565433  3356799999999999999643211111111    11222222222   34567888777 9999999


Q ss_pred             eCCCCceee--eeeCCCCCeEEEEEecCCC--eEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeecc
Q 013274          176 DIASGAISQ--TLSGHRDGIMTVEWSTSSE--WILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISK  251 (446)
Q Consensus       176 d~~~~~~~~--~l~~h~~~v~sv~~s~~~~--~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (446)
                      |+++-..+.  .+.--.+.+..+. +|...  .+.++.-.++.|-++|-+...|...+                      
T Consensus        82 DvEn~DminmiKL~~lPg~a~wv~-skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~----------------------  138 (558)
T KOG0882|consen   82 DVENFDMINMIKLVDLPGFAEWVT-SKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGY----------------------  138 (558)
T ss_pred             EeeccchhhhcccccCCCceEEec-CCCCeeeeEEeecccCCCcEEECCcCCcCccce----------------------
Confidence            998764332  1112223333332 33322  23334445788888886543210000                      


Q ss_pred             ccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCC
Q 013274          252 SLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS  331 (446)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~  331 (446)
                                                                          ...-|..+|.++.+.+-+..++|+...|
T Consensus       139 ----------------------------------------------------fkklH~sPV~~i~y~qa~Ds~vSiD~~g  166 (558)
T KOG0882|consen  139 ----------------------------------------------------FKKLHFSPVKKIRYNQAGDSAVSIDISG  166 (558)
T ss_pred             ----------------------------------------------------ecccccCceEEEEeeccccceeeccccc
Confidence                                                                0124788999999999999999999999


Q ss_pred             cEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEE
Q 013274          332 RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQEL  411 (446)
Q Consensus       332 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~l  411 (446)
                      .|..|..+..   ++..+.                           -.-|.+....-+..+..-+....++.|||++..+
T Consensus       167 mVEyWs~e~~---~qfPr~---------------------------~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qi  216 (558)
T KOG0882|consen  167 MVEYWSAEGP---FQFPRT---------------------------NLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQI  216 (558)
T ss_pred             eeEeecCCCc---ccCccc---------------------------cccccccccchhhcccccccCccceEEccccCcc
Confidence            9999987631   100000                           0012222222333444556778999999999999


Q ss_pred             EEeeCCCcEEEeCCCCCCC
Q 013274          412 YTGGNDRQILVWCPSRHIS  430 (446)
Q Consensus       412 vtgs~D~~v~vW~~~~~~~  430 (446)
                      .+-+.|..||++..-++.+
T Consensus       217 stl~~DrkVR~F~~KtGkl  235 (558)
T KOG0882|consen  217 STLNPDRKVRGFVFKTGKL  235 (558)
T ss_pred             cccCcccEEEEEEeccchh
Confidence            9999999999998877654

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.02  E-value=2.1e-05  Score=68.30  Aligned_cols=76  Identities=18%  Similarity=0.260  Sum_probs=63.2

Q ss_pred             cceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEe
Q 013274           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS  123 (446)
Q Consensus        44 ~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s  123 (446)
                      ..|.+++-.|.-..+++.|+.||.+-+||......+                -.....|+.+++.+-|+|.++..|++++
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p----------------~S~l~ahk~~i~eV~FHpk~p~~Lft~s  243 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP----------------VSLLKAHKAEIWEVHFHPKNPEHLFTCS  243 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccccch----------------HHHHHHhhhhhhheeccCCCchheeEec
Confidence            358899988776778999999999999998765321                0123579999999999999999999999


Q ss_pred             CCCeEEEEECCC
Q 013274          124 YDHYVKVWDTNC  135 (446)
Q Consensus       124 ~D~~i~iWd~~~  135 (446)
                      .||.+-.||..+
T Consensus       244 edGslw~wdas~  255 (319)
T KOG4714|consen  244 EDGSLWHWDAST  255 (319)
T ss_pred             CCCcEEEEcCCC
Confidence            999999999874

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.98  E-value=0.011  Score=52.70  Aligned_cols=33  Identities=9%  Similarity=0.004  Sum_probs=30.2

Q ss_pred             cccceEEEEEcCCCCEEEEeeCCCcEEEeCCCC
Q 013274          395 HYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR  427 (446)
Q Consensus       395 H~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~  427 (446)
                      ..+.|..|..||||+.||+...+|.|.+|+++.
T Consensus       228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs  260 (282)
T PF15492_consen  228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS  260 (282)
T ss_pred             CCCceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence            467899999999999999999999999998873

>smart00320 WD40 WD40 repeats

Probab=97.93  E-value=2.9e-05  Score=46.88  Aligned_cols=38  Identities=26%  Similarity=0.431  Sum_probs=34.2

Q ss_pred             ceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeC
Q 013274          387 KTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC  424 (446)
Q Consensus       387 ~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~  424 (446)
                      +....+..|...|+++.|+|+++++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            34567788999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.90  E-value=0.0028  Score=63.48  Aligned_cols=90  Identities=11%  Similarity=0.244  Sum_probs=60.7

Q ss_pred             eCCCccceeEEEeecCC-----------CCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEe
Q 013274           39 VSPHKGSINSLQVDLTE-----------ERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAIS  107 (446)
Q Consensus        39 ~~~H~~~v~~l~~s~~~-----------~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~  107 (446)
                      +.-|+..|+.++|.|-.           .-.||++.-.|.|.+||.......                 .....|...|.
T Consensus        51 ie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~-----------------~~l~~~~~~~q  113 (1062)
T KOG1912|consen   51 IELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVI-----------------NWLSHSNDSVQ  113 (1062)
T ss_pred             cccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhh-----------------hhhcCCCcchh
Confidence            45688999999986421           225777777899999998654321                 11234556667


Q ss_pred             EEEEeec--CC-cEEEEEeCCCeEEEEECCCCeeeEEEecC
Q 013274          108 SAIWYPV--DT-GLFVTGSYDHYVKVWDTNCTRVVMNFKMP  145 (446)
Q Consensus       108 ~~~~~~~--~~-~~l~s~s~D~~i~iWd~~~~~~~~~~~~~  145 (446)
                      .+.|.+.  +. +.|+.-....++.+|+..+|+...++...
T Consensus       114 dl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys  154 (1062)
T KOG1912|consen  114 DLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYS  154 (1062)
T ss_pred             heeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccC
Confidence            7777652  23 56666666779999999998877666543

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.89  E-value=0.03  Score=54.71  Aligned_cols=103  Identities=16%  Similarity=0.164  Sum_probs=67.9

Q ss_pred             CcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCe--
Q 013274          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI--  193 (446)
Q Consensus       116 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v--  193 (446)
                      ++.++.++.++.+..+|.++++.+......+...+.   |.-.+ ..+..++.++.+..+|.++|+.+..+.......  
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ss---P~v~~-~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~  195 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSR---PVVSD-GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTL  195 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecC---CEEEC-CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccc
Confidence            456777888999999999999998877766544322   21112 245567778999999999999887765321110  


Q ss_pred             ---EEEEEecCCCeEEEEeeCCCcEEEEEccCCce
Q 013274          194 ---MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGC  225 (446)
Q Consensus       194 ---~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~  225 (446)
                         .+-... ++ . ++.++.+|.+.-.|..+++.
T Consensus       196 ~~~~sP~v~-~~-~-v~~~~~~g~v~a~d~~~G~~  227 (394)
T PRK11138        196 RGESAPATA-FG-G-AIVGGDNGRVSAVLMEQGQL  227 (394)
T ss_pred             cCCCCCEEE-CC-E-EEEEcCCCEEEEEEccCChh
Confidence               111111 22 3 34566788888888887754

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.87  E-value=0.027  Score=53.60  Aligned_cols=118  Identities=13%  Similarity=0.118  Sum_probs=88.8

Q ss_pred             cccccCeEEEEEccCCCEEEEeecCC-cEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEe
Q 013274          306 TAHYGAVTGLKVTEDGMYLLSAGSDS-RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDI  383 (446)
Q Consensus       306 ~~h~~~v~~l~fs~dg~~l~sgs~D~-~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~  383 (446)
                      .+|.+.|+-..+..++.-++-|..|| .+-++|..++.....     ....+..-.+..++++..++++.. ..+-++|+
T Consensus       356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~-----e~~lg~I~av~vs~dGK~~vvaNdr~el~vidi  430 (668)
T COG4946         356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI-----EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDI  430 (668)
T ss_pred             cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe-----eCCccceEEEEEcCCCcEEEEEcCceEEEEEEe
Confidence            46777788888888888888999999 899999998753221     111234456778888876666544 46777889


Q ss_pred             ecCceEEEecccccceEEEEEcCCCCEEEEeeCC----CcEEEeCCCCC
Q 013274          384 WSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND----RQILVWCPSRH  428 (446)
Q Consensus       384 ~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D----~~v~vW~~~~~  428 (446)
                      .++.....=....+-|++++|||+++++|-+=.+    +.|++++.++.
T Consensus       431 dngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~  479 (668)
T COG4946         431 DNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG  479 (668)
T ss_pred             cCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence            8888765556677889999999999999965544    67999998864

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.87  E-value=0.00044  Score=70.24  Aligned_cols=102  Identities=17%  Similarity=0.205  Sum_probs=76.7

Q ss_pred             CCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeE
Q 013274          115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM  194 (446)
Q Consensus       115 ~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~  194 (446)
                      ++..++-|+-...+...|+.+.+..+.......-  +.+..  .++..+.+|...|+|.+-|.++.+.++++..|++.|.
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~--v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS  221 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASG--VTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS  221 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCc--eEEEE--ecCcEEEeecccceEEeecCCcCceeeeeecccccee
Confidence            4567888888888999999988777665543311  11111  2345788999999999999999999999999999998


Q ss_pred             EEEEecCCCeEEEEee---------CCCcEEEEEccCC
Q 013274          195 TVEWSTSSEWILVTGG---------CDGAIRFWDIRRA  223 (446)
Q Consensus       195 sv~~s~~~~~~l~S~s---------~Dg~I~iWd~~~~  223 (446)
                      .....  |+ +|+|++         .|.-|++||+|..
T Consensus       222 DfDv~--GN-lLitCG~S~R~~~l~~D~FvkVYDLRmm  256 (1118)
T KOG1275|consen  222 DFDVQ--GN-LLITCGYSMRRYNLAMDPFVKVYDLRMM  256 (1118)
T ss_pred             eeecc--CC-eEEEeecccccccccccchhhhhhhhhh
Confidence            87764  44 578887         3667888988864

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.82  E-value=0.00027  Score=71.71  Aligned_cols=151  Identities=20%  Similarity=0.319  Sum_probs=105.4

Q ss_pred             ceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeC
Q 013274           45 SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY  124 (446)
Q Consensus        45 ~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~  124 (446)
                      .|.=|+.   +++++.+|..-|+|.+-|+++-+.                 .+++..|++.|.....   .|.+|+|||.
T Consensus       179 ~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~-----------------iht~~aHs~siSDfDv---~GNlLitCG~  235 (1118)
T KOG1275|consen  179 GVTIMRY---NNRNLFCGDTRGTVFLRDPNSFET-----------------IHTFDAHSGSISDFDV---QGNLLITCGY  235 (1118)
T ss_pred             ceEEEEe---cCcEEEeecccceEEeecCCcCce-----------------eeeeeccccceeeeec---cCCeEEEeec
Confidence            3666655   368999999999999999875432                 1334678888766443   5789999998


Q ss_pred             ---------CCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEe---CCCCc-eeeeeeCCCC
Q 013274          125 ---------DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCD---IASGA-ISQTLSGHRD  191 (446)
Q Consensus       125 ---------D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd---~~~~~-~~~~l~~h~~  191 (446)
                               |.-|+|||+...+.+..++.+-....+.|.|.-.  ..++..+..|...+.|   +.+.. ....+.....
T Consensus       236 S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~--t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s  313 (1118)
T KOG1275|consen  236 SMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLT--TRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGS  313 (1118)
T ss_pred             ccccccccccchhhhhhhhhhhccCCcccccCchhhhhccccc--ceEEEEecccceeeccccccCCCccceeEEccCCC
Confidence                     4557999998776665555443334455666543  3567777889999999   33332 2233333445


Q ss_pred             CeEEEEEecCCCeEEEEeeCCCcEEEEEcc
Q 013274          192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIR  221 (446)
Q Consensus       192 ~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~  221 (446)
                      .+++..++++++ .|+-|..+|.|.+|.-+
T Consensus       314 ~i~~fDiSsn~~-alafgd~~g~v~~wa~~  342 (1118)
T KOG1275|consen  314 GISAFDISSNGD-ALAFGDHEGHVNLWADR  342 (1118)
T ss_pred             cceeEEecCCCc-eEEEecccCcEeeecCC
Confidence            589999999887 57889999999999744

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.70  E-value=0.00043  Score=69.41  Aligned_cols=155  Identities=13%  Similarity=0.184  Sum_probs=109.2

Q ss_pred             ccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEE
Q 013274           43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG  122 (446)
Q Consensus        43 ~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~  122 (446)
                      ...++|++++   +++|+-|..+|.|.+.+.+....           .        ...|..       +..+|.+++||
T Consensus        39 ~D~is~~av~---~~~~~~GtH~g~v~~~~~~~~~~-----------~--------~~~~s~-------~~~~Gey~asC   89 (846)
T KOG2066|consen   39 NDAISCCAVH---DKFFALGTHRGAVYLTTCQGNPK-----------T--------NFDHSS-------SILEGEYVASC   89 (846)
T ss_pred             hhHHHHHHhh---cceeeeccccceEEEEecCCccc-----------c--------cccccc-------cccCCceEEEe
Confidence            4678888885   47999999999999998753210           0        011221       13578999999


Q ss_pred             eCCCeEEEEECCCCeeeEEEecCCceEEeeeccC--CCCceEEEEeeCCCcEEEEeCCC--CceeeeeeCCCCCeEEEEE
Q 013274          123 SYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPL--AASHMLIAAGTEDVQVRLCDIAS--GAISQTLSGHRDGIMTVEW  198 (446)
Q Consensus       123 s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lasgs~d~~v~vwd~~~--~~~~~~l~~h~~~v~sv~~  198 (446)
                      |.||+|.|-.+-+.+....+.....+.+++++|+  ......+++|+.-| +.++.-+-  .+....+..-.++|.++.|
T Consensus        90 S~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W  168 (846)
T KOG2066|consen   90 SDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW  168 (846)
T ss_pred             cCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe
Confidence            9999999999988888888887778889999987  23345788888777 66664321  1112245666889999999


Q ss_pred             ecCCCeEEEEeeCCCcEEEEEccCCceeEEeec
Q 013274          199 STSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQ  231 (446)
Q Consensus       199 s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~  231 (446)
                      .  +. ++| -..|--|++||+.....+..+..
T Consensus       169 ~--g~-lIA-Wand~Gv~vyd~~~~~~l~~i~~  197 (846)
T KOG2066|consen  169 R--GN-LIA-WANDDGVKVYDTPTRQRLTNIPP  197 (846)
T ss_pred             c--Cc-EEE-EecCCCcEEEeccccceeeccCC
Confidence            6  33 334 44455599999987766655543

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.68  E-value=0.12  Score=55.71  Aligned_cols=110  Identities=19%  Similarity=0.302  Sum_probs=66.0

Q ss_pred             eEEEEeecCCcEEEEEeC---C---CeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeC---CCcEEEEe
Q 013274          107 SSAIWYPVDTGLFVTGSY---D---HYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTE---DVQVRLCD  176 (446)
Q Consensus       107 ~~~~~~~~~~~~l~s~s~---D---~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~---d~~v~vwd  176 (446)
                      ..+.|-. ||.+||+.+.   +   ..+|||+-+ |.+..+.. ..|-...+++.|.   +.+||+...   ...|.+|.
T Consensus       213 ~~ISWRG-DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPs---G~lIA~~q~~~~~~~VvFfE  287 (928)
T PF04762_consen  213 VRISWRG-DGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPS---GNLIASSQRLPDRHDVVFFE  287 (928)
T ss_pred             eEEEECC-CCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCC---CCEEEEEEEcCCCcEEEEEe
Confidence            3556765 8899988775   2   579999865 44332221 2222345566664   457777643   23455554


Q ss_pred             CCCCceee--ee--eCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCc
Q 013274          177 IASGAISQ--TL--SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG  224 (446)
Q Consensus       177 ~~~~~~~~--~l--~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~  224 (446)
                      - +|-.-.  .+  ......|..+.|++++. +|+..-.| .|.+|-..+..
T Consensus       288 r-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~-iLAv~~~~-~vqLWt~~NYH  336 (928)
T PF04762_consen  288 R-NGLRHGEFTLRFDPEEEKVIELAWNSDSE-ILAVWLED-RVQLWTRSNYH  336 (928)
T ss_pred             c-CCcEeeeEecCCCCCCceeeEEEECCCCC-EEEEEecC-CceEEEeeCCE
Confidence            3 332222  22  24567899999999987 56655544 49999876654

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.65  E-value=1.5e-05  Score=77.59  Aligned_cols=172  Identities=18%  Similarity=0.249  Sum_probs=106.7

Q ss_pred             ceeEeCCCccceeEEEeecCCCCEEEEe----eCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEE
Q 013274           35 YKEIVSPHKGSINSLQVDLTEERYLLSG----ASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAI  110 (446)
Q Consensus        35 ~~~~~~~H~~~v~~l~~s~~~~~~l~s~----s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~  110 (446)
                      ..++..+|....++++|++-|...||.|    -.|..+.|||+.+.-..      ++..+.+..  ....|    ..+++
T Consensus        94 s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltv------Pke~~~fs~--~~l~g----qns~c  161 (783)
T KOG1008|consen   94 SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTV------PKESPLFSS--STLDG----QNSVC  161 (783)
T ss_pred             cceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCC------Ccccccccc--ccccC----ccccc
Confidence            3566778999999999998777777776    23568999999876321      111111111  11122    22455


Q ss_pred             EeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeC-CCC-ceeeeeeC
Q 013274          111 WYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI-ASG-AISQTLSG  188 (446)
Q Consensus       111 ~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~-~~~-~~~~~l~~  188 (446)
                      +. .+.+++.+|...+.+.++|+.........-.+.-+..+.+.|+..  .++++- .|+.|.+||. ..- .++.++..
T Consensus       162 wl-rd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~--nY~cs~-~dg~iAiwD~~rnienpl~~i~~  237 (783)
T KOG1008|consen  162 WL-RDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSP--NYFCSN-SDGDIAIWDTYRNIENPLQIILR  237 (783)
T ss_pred             cc-cCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCC--Cceecc-ccCceeeccchhhhccHHHHHhh
Confidence            65 578899999999999999986321111000011123345555433  466654 4999999993 222 33344332


Q ss_pred             CCC----CeEEEEEecCCCeEEEEeeCC-CcEEEEEccC
Q 013274          189 HRD----GIMTVEWSTSSEWILVTGGCD-GAIRFWDIRR  222 (446)
Q Consensus       189 h~~----~v~sv~~s~~~~~~l~S~s~D-g~I~iWd~~~  222 (446)
                      ...    .+..++|.|-...++++.+.| ++|+++|++.
T Consensus       238 ~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  238 NENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             CCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            222    389999999876667777766 7899999863

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.59  E-value=0.012  Score=56.41  Aligned_cols=109  Identities=17%  Similarity=0.247  Sum_probs=69.6

Q ss_pred             ccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeC---------------
Q 013274          104 YAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTE---------------  168 (446)
Q Consensus       104 ~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~---------------  168 (446)
                      -.+..+.++| .|.+|++.-. .-|.+|+-.....+..+.++ .++.+.++|.   ..+|.+=+.               
T Consensus        33 ~p~~~~~~SP-~G~~l~~~~~-~~V~~~~g~~~~~l~~~~~~-~V~~~~fSP~---~kYL~tw~~~pi~~pe~e~sp~~~  106 (561)
T COG5354          33 WPVAYVSESP-LGTYLFSEHA-AGVECWGGPSKAKLVRFRHP-DVKYLDFSPN---EKYLVTWSREPIIEPEIEISPFTS  106 (561)
T ss_pred             cchhheeecC-cchheehhhc-cceEEccccchhheeeeecC-CceecccCcc---cceeeeeccCCccChhhccCCccc
Confidence            3455667776 6767765544 46999998776656556544 3455555553   345544222               


Q ss_pred             CCcEEEEeCCCCceeeeeeCCCCC--eE-EEEEecCCCeEEEEeeCCCcEEEEEc
Q 013274          169 DVQVRLCDIASGAISQTLSGHRDG--IM-TVEWSTSSEWILVTGGCDGAIRFWDI  220 (446)
Q Consensus       169 d~~v~vwd~~~~~~~~~l~~h~~~--v~-sv~~s~~~~~~l~S~s~Dg~I~iWd~  220 (446)
                      +..+.+||+.+|.++..+.+...+  .+ -+.|+-++++++--.  -..+.|+++
T Consensus       107 ~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv--~~sl~i~e~  159 (561)
T COG5354         107 KNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV--GSSLYIHEI  159 (561)
T ss_pred             cCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc--cCeEEEEec
Confidence            336999999999999888776665  55 677887776532111  235888876

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.52  E-value=0.039  Score=53.56  Aligned_cols=132  Identities=16%  Similarity=0.164  Sum_probs=77.4

Q ss_pred             eeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCC
Q 013274           46 INSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYD  125 (446)
Q Consensus        46 v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D  125 (446)
                      -+-++||| -|.||+|-=.-| |.+|=.+.-..                  -..-.|.+ |.-+.++| +.++|+|-|.-
T Consensus       213 etyv~wSP-~GTYL~t~Hk~G-I~lWGG~~f~r------------------~~RF~Hp~-Vq~idfSP-~EkYLVT~s~~  270 (698)
T KOG2314|consen  213 ETYVRWSP-KGTYLVTFHKQG-IALWGGESFDR------------------IQRFYHPG-VQFIDFSP-NEKYLVTYSPE  270 (698)
T ss_pred             eeeEEecC-CceEEEEEeccc-eeeecCccHHH------------------HHhccCCC-ceeeecCC-ccceEEEecCC
Confidence            35688997 578998875544 89995432110                  00113442 33445565 77888887652


Q ss_pred             -----------CeEEEEECCCCeeeEEEecCCc--e--EEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCC
Q 013274          126 -----------HYVKVWDTNCTRVVMNFKMPGK--V--YRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHR  190 (446)
Q Consensus       126 -----------~~i~iWd~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~  190 (446)
                                 ..++|||+.+|...+.|.....  .  --+.++.   +..++|--.. .+|.|++..+-.++..-.=.-
T Consensus       271 p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~---DdKy~Arm~~-~sisIyEtpsf~lld~Kslki  346 (698)
T KOG2314|consen  271 PIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSH---DDKYFARMTG-NSISIYETPSFMLLDKKSLKI  346 (698)
T ss_pred             ccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEecc---CCceeEEecc-ceEEEEecCceeeecccccCC
Confidence                       6799999999999888876311  1  1122333   3455554433 568888765533221111123


Q ss_pred             CCeEEEEEecCCC
Q 013274          191 DGIMTVEWSTSSE  203 (446)
Q Consensus       191 ~~v~sv~~s~~~~  203 (446)
                      ..|....|+|.+.
T Consensus       347 ~gIr~FswsP~~~  359 (698)
T KOG2314|consen  347 SGIRDFSWSPTSN  359 (698)
T ss_pred             ccccCcccCCCcc
Confidence            5677778888754

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.44  E-value=0.017  Score=58.76  Aligned_cols=115  Identities=15%  Similarity=0.204  Sum_probs=77.0

Q ss_pred             ccCeEEEEEccCCCEEEEeecCCcEEEE--ecCcCceeeeeeeEEEeecCCCeEEEEcCCCcE-EEEeCCCceEEEEeec
Q 013274          309 YGAVTGLKVTEDGMYLLSAGSDSRIRLW--DVESGRNTLVNFETVRLQTSKPIQLATTQDPAV-VFVPCMTAVKAFDIWS  385 (446)
Q Consensus       309 ~~~v~~l~fs~dg~~l~sgs~D~~i~lW--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~  385 (446)
                      ..++++++.+.+=+.+|.|-.||.|-++  |+...+-....+.  ....++..-+++..++.. +|+++...|.++.+..
T Consensus       125 ~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~--~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~g  202 (933)
T KOG2114|consen  125 PSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYS--HRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSG  202 (933)
T ss_pred             CCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeee--ccCCCCceeeEEecCCceeEEEEecceeEEEEecC
Confidence            3568889999998999999999999988  3332221111111  111233444566655554 7888888999999874


Q ss_pred             Cc-eEEEecccccceEEEEEcCCCC-EEEEeeCCCcEEEeCCCC
Q 013274          386 GK-TCLTFRGHYEYVNCCCFSSQDQ-ELYTGGNDRQILVWCPSR  427 (446)
Q Consensus       386 ~~-~~~~l~gH~~~v~~~~fSpd~~-~lvtgs~D~~v~vW~~~~  427 (446)
                      +. .+.++..|...++|-+|++-.. .+++++  ..|-++++++
T Consensus       203 r~p~~~~ld~~G~~lnCss~~~~t~qfIca~~--e~l~fY~sd~  244 (933)
T KOG2114|consen  203 RTPSLKVLDNNGISLNCSSFSDGTYQFICAGS--EFLYFYDSDG  244 (933)
T ss_pred             CCcceeeeccCCccceeeecCCCCccEEEecC--ceEEEEcCCC
Confidence            33 2566888899999999997655 555543  4578887763

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.41  E-value=0.092  Score=47.52  Aligned_cols=148  Identities=14%  Similarity=0.108  Sum_probs=89.3

Q ss_pred             EEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCe
Q 013274           48 SLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHY  127 (446)
Q Consensus        48 ~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~  127 (446)
                      ++.|.+.++.++++--..+.|..||..++...           ++.     ..+    ...+++...++ .++.+..++ 
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-----------~~~-----~~~----~~G~~~~~~~g-~l~v~~~~~-   61 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-----------VID-----LPG----PNGMAFDRPDG-RLYVADSGG-   61 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-----------EEE-----SSS----EEEEEEECTTS-EEEEEETTC-
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-----------EEe-----cCC----CceEEEEccCC-EEEEEEcCc-
Confidence            46777657888888888899999998765321           000     011    33445553454 555555544 


Q ss_pred             EEEEECCCCeeeEEEec--C----CceEEeeeccCCCCceEEEEeeCC--------CcEEEEeCCCCceeeeeeCCCCCe
Q 013274          128 VKVWDTNCTRVVMNFKM--P----GKVYRTAMSPLAASHMLIAAGTED--------VQVRLCDIASGAISQTLSGHRDGI  193 (446)
Q Consensus       128 i~iWd~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~lasgs~d--------~~v~vwd~~~~~~~~~l~~h~~~v  193 (446)
                      +.++|+.+++.......  .    ...+.+++.+.   +.+.++....        +.|..++.. ++.. .+...-...
T Consensus        62 ~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~---G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~-~~~~~~~~p  136 (246)
T PF08450_consen   62 IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPD---GNLYVTDSGGGGASGIDPGSVYRIDPD-GKVT-VVADGLGFP  136 (246)
T ss_dssp             EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TT---S-EEEEEECCBCTTCGGSEEEEEEETT-SEEE-EEEEEESSE
T ss_pred             eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCC---CCEEEEecCCCccccccccceEEECCC-CeEE-EEecCcccc
Confidence            55559998866544443  1    12455556553   2344443322        457777776 4433 333334556


Q ss_pred             EEEEEecCCCeEEEEeeCCCcEEEEEccC
Q 013274          194 MTVEWSTSSEWILVTGGCDGAIRFWDIRR  222 (446)
Q Consensus       194 ~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~  222 (446)
                      ..++|+|+++.++++-+..+.|..+++..
T Consensus       137 NGi~~s~dg~~lyv~ds~~~~i~~~~~~~  165 (246)
T PF08450_consen  137 NGIAFSPDGKTLYVADSFNGRIWRFDLDA  165 (246)
T ss_dssp             EEEEEETTSSEEEEEETTTTEEEEEEEET
T ss_pred             cceEECCcchheeecccccceeEEEeccc
Confidence            89999999987777878888888888753

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.40  E-value=0.0025  Score=61.40  Aligned_cols=100  Identities=12%  Similarity=0.090  Sum_probs=65.3

Q ss_pred             eEEEEEccCCCEEEEeec-----------CCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEE
Q 013274          312 VTGLKVTEDGMYLLSAGS-----------DSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKA  380 (446)
Q Consensus       312 v~~l~fs~dg~~l~sgs~-----------D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (446)
                      |.-+.|||+.+||+|=|.           ...|.|||+.+|.-.. .|...+........+..+.|..+++--..+++.+
T Consensus       252 Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkr-sF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisI  330 (698)
T KOG2314|consen  252 VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKR-SFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISI  330 (698)
T ss_pred             ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhc-ceeccCCCccccceEEeccCCceeEEeccceEEE
Confidence            777899999999998664           2568999999986321 2222111112223456677777777766778888


Q ss_pred             EEeecCceEEEecccccceEEEEEcCCCCEEE
Q 013274          381 FDIWSGKTCLTFRGHYEYVNCCCFSSQDQELY  412 (446)
Q Consensus       381 ~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lv  412 (446)
                      ++..+-.++..-.-....|-++.|||-++.||
T Consensus       331 yEtpsf~lld~Kslki~gIr~FswsP~~~llA  362 (698)
T KOG2314|consen  331 YETPSFMLLDKKSLKISGIRDFSWSPTSNLLA  362 (698)
T ss_pred             EecCceeeecccccCCccccCcccCCCcceEE
Confidence            87655433332233456678899999977765

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.37  E-value=0.023  Score=52.89  Aligned_cols=74  Identities=15%  Similarity=0.371  Sum_probs=63.0

Q ss_pred             eEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCc
Q 013274          148 VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG  224 (446)
Q Consensus       148 ~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~  224 (446)
                      +..++++|+..  -++..++.+..|+|.|+++...+..+..| ..+++.+|..+..+.+..|-..|.|.+||+|...
T Consensus       196 IrdlafSp~~~--GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  196 IRDLAFSPFNE--GLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             hhhhccCcccc--ceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence            56677877643  37888899999999999999888888777 8899999999988888889999999999999754

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.36  E-value=0.0062  Score=61.74  Aligned_cols=92  Identities=15%  Similarity=0.283  Sum_probs=73.5

Q ss_pred             CCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCe
Q 013274          125 DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEW  204 (446)
Q Consensus       125 D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~  204 (446)
                      -|+|-|+ +++|.+.+....+-++.+++++|   ...+|+.|-.-|.+.+|...+.+.-.....|..++..+.||++|. 
T Consensus        40 ~GSVtIf-adtGEPqr~Vt~P~hatSLCWHp---e~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~-  114 (1416)
T KOG3617|consen   40 GGSVTIF-ADTGEPQRDVTYPVHATSLCWHP---EEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGT-  114 (1416)
T ss_pred             CceEEEE-ecCCCCCcccccceehhhhccCh---HHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCC-
Confidence            3678887 45666666665555666677776   445789999999999999888776666778999999999999997 


Q ss_pred             EEEEeeCCCcEEEEEcc
Q 013274          205 ILVTGGCDGAIRFWDIR  221 (446)
Q Consensus       205 ~l~S~s~Dg~I~iWd~~  221 (446)
                      +|+|+..=|.+.+|...
T Consensus       115 ~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen  115 VLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eEEEcCCCceeEEEEee
Confidence            57899999999999865

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.33  E-value=0.00014  Score=73.32  Aligned_cols=186  Identities=13%  Similarity=0.210  Sum_probs=115.8

Q ss_pred             EEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCC-cEEEEEccCCceeE
Q 013274          149 YRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDG-AIRFWDIRRAGCFR  227 (446)
Q Consensus       149 ~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg-~I~iWd~~~~~~~~  227 (446)
                      .+++|+.   +...|+.|+..|.|+++++.+|..-.....|+.+|+-|.-+.++...|.++++.. -..+|++....   
T Consensus      1105 Tc~afs~---~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~--- 1178 (1516)
T KOG1832|consen 1105 TCIAFSG---GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTG--- 1178 (1516)
T ss_pred             eeEEeec---CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccccc---
Confidence            3444544   3457899999999999999999888888999999999998888887665555554 57788875310   


Q ss_pred             EeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccc
Q 013274          228 VLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATA  307 (446)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (446)
                        ..                                                                           .
T Consensus      1179 --~~---------------------------------------------------------------------------~ 1181 (1516)
T KOG1832|consen 1179 --GP---------------------------------------------------------------------------R 1181 (1516)
T ss_pred             --Cc---------------------------------------------------------------------------c
Confidence              00                                                                           0


Q ss_pred             c-ccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecC
Q 013274          308 H-YGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSG  386 (446)
Q Consensus       308 h-~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  386 (446)
                      | +..=.++.|+..-+.-+.|.....+.+||+.++.....-+....-..-....+.|+|+..+++-.    -.+||+...
T Consensus      1182 Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIlnd----GvLWDvR~~ 1257 (1516)
T KOG1832|consen 1182 HSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILND----GVLWDVRIP 1257 (1516)
T ss_pred             ccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEeeC----ceeeeeccH
Confidence            0 01123455665544434454455689999998753221111111111123456778887776643    357888766


Q ss_pred             ceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCC
Q 013274          387 KTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR  427 (446)
Q Consensus       387 ~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~  427 (446)
                      +.++.|.--+..+. =.|+|.|.-++--|     .|||+.+
T Consensus      1258 ~aIh~FD~ft~~~~-G~FHP~g~eVIINS-----EIwD~RT 1292 (1516)
T KOG1832|consen 1258 EAIHRFDQFTDYGG-GGFHPSGNEVIINS-----EIWDMRT 1292 (1516)
T ss_pred             HHHhhhhhheeccc-ccccCCCceEEeec-----hhhhhHH
Confidence            65555543332222 24899988887655     4777653

>smart00320 WD40 WD40 repeats

Probab=97.33  E-value=0.00061  Score=40.73  Aligned_cols=38  Identities=32%  Similarity=0.677  Sum_probs=32.2

Q ss_pred             ceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEE
Q 013274          181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD  219 (446)
Q Consensus       181 ~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd  219 (446)
                      .+...+..|...|.++.|.+.++ .+++++.|+.+++||
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence            44566778999999999999876 578999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.32  E-value=0.0086  Score=60.46  Aligned_cols=155  Identities=17%  Similarity=0.249  Sum_probs=99.5

Q ss_pred             eCCCccceeEEEeecC------------CCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccE
Q 013274           39 VSPHKGSINSLQVDLT------------EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAI  106 (446)
Q Consensus        39 ~~~H~~~v~~l~~s~~------------~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V  106 (446)
                      +..|.|.|+-..+...            +|.+++|||.||+|.|--+.++...   .....               +..+
T Consensus        54 ~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~---~~~df---------------~rpi  115 (846)
T KOG2066|consen   54 LGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEI---TQYDF---------------KRPI  115 (846)
T ss_pred             eccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccc---eeEec---------------CCcc
Confidence            4578888887776543            4889999999999999877554321   11111               2234


Q ss_pred             eEEEEeec----CCcEEEEEeCCCeEEEEECC---CCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCC
Q 013274          107 SSAIWYPV----DTGLFVTGSYDHYVKVWDTN---CTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS  179 (446)
Q Consensus       107 ~~~~~~~~----~~~~l~s~s~D~~i~iWd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~  179 (446)
                      .+++++|.    ..+++++||.-| +.++.-.   ....+......|.++++.+..     .++|=++.+| |++||+.+
T Consensus       116 ksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g-----~lIAWand~G-v~vyd~~~  188 (846)
T KOG2066|consen  116 KSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRG-----NLIAWANDDG-VKVYDTPT  188 (846)
T ss_pred             eeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecC-----cEEEEecCCC-cEEEeccc
Confidence            45555552    356899999988 7776421   111122223457788877753     4677776554 99999999


Q ss_pred             CceeeeeeCCCCCe------EEEEEecCCCeEEEEeeCCCcEEEEEcc
Q 013274          180 GAISQTLSGHRDGI------MTVEWSTSSEWILVTGGCDGAIRFWDIR  221 (446)
Q Consensus       180 ~~~~~~l~~h~~~v------~sv~~s~~~~~~l~S~s~Dg~I~iWd~~  221 (446)
                      +..+..++.....+      ..+.|.++..  | .-||-.+|+|..++
T Consensus       189 ~~~l~~i~~p~~~~R~e~fpphl~W~~~~~--L-VIGW~d~v~i~~I~  233 (846)
T KOG2066|consen  189 RQRLTNIPPPSQSVRPELFPPHLHWQDEDR--L-VIGWGDSVKICSIK  233 (846)
T ss_pred             cceeeccCCCCCCCCcccCCCceEecCCCe--E-EEecCCeEEEEEEe
Confidence            88777765433333      3566776543  2 34677789999887

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.30  E-value=0.018  Score=44.11  Aligned_cols=102  Identities=14%  Similarity=0.190  Sum_probs=66.9

Q ss_pred             EeEEEEeecCC---cEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCce
Q 013274          106 ISSAIWYPVDT---GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI  182 (446)
Q Consensus       106 V~~~~~~~~~~---~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~  182 (446)
                      |+++++++.++   ..|+.||.|..||+|+-+  ..+..++..+.+..+....  .  ..++.+..+|+|-+|+-  ...
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~--~--~~F~Y~l~NGTVGvY~~--~~R   73 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLG--G--GRFAYALANGTVGVYDR--SQR   73 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcC--C--CEEEEEecCCEEEEEeC--cce
Confidence            55666665444   479999999999999864  5566666666665544332  2  46899999999999974  445


Q ss_pred             eeeeeCCCCCeEEEEEe-cC--CCeEEEEeeCCCcEE
Q 013274          183 SQTLSGHRDGIMTVEWS-TS--SEWILVTGGCDGAIR  216 (446)
Q Consensus       183 ~~~l~~h~~~v~sv~~s-~~--~~~~l~S~s~Dg~I~  216 (446)
                      ++.++.... +.++.+. .+  +..-|++|-.+|.|-
T Consensus        74 lWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   74 LWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            566664444 4555433 22  223467887778763

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.25  E-value=0.13  Score=47.20  Aligned_cols=138  Identities=19%  Similarity=0.221  Sum_probs=82.4

Q ss_pred             EEEeecCCCCEEEEeeCCCc-EEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeC--
Q 013274           48 SLQVDLTEERYLLSGASDSS-VAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY--  124 (446)
Q Consensus        48 ~l~~s~~~~~~l~s~s~Dg~-i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~--  124 (446)
                      .++.+|.....++.+-.-|+ ..+||+.++....         .+..-...++.||-      +|+ .|+++|++.=.  
T Consensus         9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~---------~~~a~~gRHFyGHg------~fs-~dG~~LytTEnd~   72 (305)
T PF07433_consen    9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQ---------RLWAPPGRHFYGHG------VFS-PDGRLLYTTENDY   72 (305)
T ss_pred             ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceee---------EEcCCCCCEEecCE------EEc-CCCCEEEEecccc
Confidence            45666666677777777776 6788988765321         11112345677885      444 48888887633  


Q ss_pred             ---CCeEEEEECC-CCeeeEEEecCCc-eEEeeeccCCCCceE-EEEe----------------eCCCcEEEEeCCCCce
Q 013274          125 ---DHYVKVWDTN-CTRVVMNFKMPGK-VYRTAMSPLAASHML-IAAG----------------TEDVQVRLCDIASGAI  182 (446)
Q Consensus       125 ---D~~i~iWd~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-lasg----------------s~d~~v~vwd~~~~~~  182 (446)
                         .|.|-|||.. +.+.+..+...|- .+.+.+.++..  .+ +|-|                +.+.++-+.|..+|++
T Consensus        73 ~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~--tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~l  150 (305)
T PF07433_consen   73 ETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGE--TLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGAL  150 (305)
T ss_pred             CCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCC--EEEEEcCCCccCcccCceecChhhcCCceEEEecCCCce
Confidence               4789999998 4445555543321 23344444331  12 1111                2234566677788876


Q ss_pred             eee--e--eCCCCCeEEEEEecCCC
Q 013274          183 SQT--L--SGHRDGIMTVEWSTSSE  203 (446)
Q Consensus       183 ~~~--l--~~h~~~v~sv~~s~~~~  203 (446)
                      +..  +  .-|+-.+..+++.+++.
T Consensus       151 l~q~~Lp~~~~~lSiRHLa~~~~G~  175 (305)
T PF07433_consen  151 LEQVELPPDLHQLSIRHLAVDGDGT  175 (305)
T ss_pred             eeeeecCccccccceeeEEecCCCc
Confidence            654  5  33777788888887764

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.24  E-value=0.0014  Score=63.84  Aligned_cols=73  Identities=12%  Similarity=0.090  Sum_probs=52.8

Q ss_pred             ccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecC
Q 013274          307 AHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSG  386 (446)
Q Consensus       307 ~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  386 (446)
                      ...+.|.+++++|+...|+.|..||+|.+||...+......                                       
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~k---------------------------------------  297 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAK---------------------------------------  297 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeee---------------------------------------
Confidence            34567999999999999999999999999998764221110                                       


Q ss_pred             ceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274          387 KTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS  426 (446)
Q Consensus       387 ~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~  426 (446)
                              +.=.++.++|+|+|..++.|+.-|.+.+||..
T Consensus       298 --------a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  298 --------AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             --------ecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence                    00124667777777777777777777777665

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.23  E-value=0.015  Score=58.35  Aligned_cols=54  Identities=17%  Similarity=0.272  Sum_probs=42.9

Q ss_pred             CCcEEEEeCCC----C-ceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCC
Q 013274          169 DVQVRLCDIAS----G-AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA  223 (446)
Q Consensus       169 d~~v~vwd~~~----~-~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~  223 (446)
                      ++.|.+.|..+    + .....+.- ......+.++|+++++++++..++++-+.|+.+.
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~  353 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKL  353 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhh
Confidence            56799999988    3 45555542 3456889999999998889989999999998764

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.19  E-value=0.029  Score=56.57  Aligned_cols=153  Identities=16%  Similarity=0.112  Sum_probs=97.7

Q ss_pred             eeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC---------
Q 013274           46 INSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT---------  116 (446)
Q Consensus        46 v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~---------  116 (446)
                      -+++.|++ .| +||-| .-..|.+-|..+-+..                 +...-|+..|+.+.|.|...         
T Consensus        18 ~~A~Dw~~-~G-LiAyg-shslV~VVDs~s~q~i-----------------qsie~h~s~V~~VrWap~~~p~~llS~~~   77 (1062)
T KOG1912|consen   18 RNAADWSP-SG-LIAYG-SHSLVSVVDSRSLQLI-----------------QSIELHQSAVTSVRWAPAPSPRDLLSPSS   77 (1062)
T ss_pred             ccccccCc-cc-eEEEe-cCceEEEEehhhhhhh-----------------hccccCccceeEEEeccCCCchhccCccc
Confidence            56788875 33 55555 4566888886543221                 12235777888888866321         


Q ss_pred             --cEEEEEeCCCeEEEEECCCCeeeEEEecC-CceEEeeeccCCCCc-eEEEEeeCCCcEEEEeCCCCceeeeeeCCCCC
Q 013274          117 --GLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASH-MLIAAGTEDVQVRLCDIASGAISQTLSGHRDG  192 (446)
Q Consensus       117 --~~l~s~s~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~  192 (446)
                        -++|++...|.|.+||...+..+..++.+ ..+..+.+.+.-.+. .++++-.....+-+|+..+|...+...-....
T Consensus        78 ~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~i  157 (1062)
T KOG1912|consen   78 SQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEI  157 (1062)
T ss_pred             cceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcc
Confidence              25788888899999999887776666543 334555555433222 45555555679999999999988776655566


Q ss_pred             eEEEEEecCCC-eEEEEeeCCCcEEEEE
Q 013274          193 IMTVEWSTSSE-WILVTGGCDGAIRFWD  219 (446)
Q Consensus       193 v~sv~~s~~~~-~~l~S~s~Dg~I~iWd  219 (446)
                      ..+..+.|-+. ++.+.++ .|.+.+-+
T Consensus       158 Ls~f~~DPfd~rh~~~l~s-~g~vl~~~  184 (1062)
T KOG1912|consen  158 LSCFRVDPFDSRHFCVLGS-KGFVLSCK  184 (1062)
T ss_pred             eeeeeeCCCCcceEEEEcc-CceEEEEe
Confidence            77788888554 3334444 45555554

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.17  E-value=0.27  Score=47.99  Aligned_cols=110  Identities=10%  Similarity=0.052  Sum_probs=69.9

Q ss_pred             CcEEEEEeCCCeEEEEECCCCeeeEEEecCCceE--------EeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeee
Q 013274          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVY--------RTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS  187 (446)
Q Consensus       116 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~  187 (446)
                      ++.++.++.++.+..+|.++++.+-.........        .+...+.. ....+..++.++.++.+|.++|+.+++..
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~  147 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV-AGGKVYIGSEKGQVYALNAEDGEVAWQTK  147 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE-ECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence            4577778888999999999999887766543110        00011111 12345567788999999999999887765


Q ss_pred             CCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEe
Q 013274          188 GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVL  229 (446)
Q Consensus       188 ~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~  229 (446)
                      .......+..+. ++ . ++.++.++.+.-+|..+++.+=.+
T Consensus       148 ~~~~~~ssP~v~-~~-~-v~v~~~~g~l~ald~~tG~~~W~~  186 (394)
T PRK11138        148 VAGEALSRPVVS-DG-L-VLVHTSNGMLQALNESDGAVKWTV  186 (394)
T ss_pred             CCCceecCCEEE-CC-E-EEEECCCCEEEEEEccCCCEeeee
Confidence            432222222222 33 3 445677899999999888754333

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.15  E-value=0.0028  Score=62.93  Aligned_cols=64  Identities=27%  Similarity=0.524  Sum_probs=51.1

Q ss_pred             CceEEEEeeCCCcEEEEeCCCCc---------------eeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCC
Q 013274          159 SHMLIAAGTEDVQVRLCDIASGA---------------ISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA  223 (446)
Q Consensus       159 ~~~~lasgs~d~~v~vwd~~~~~---------------~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~  223 (446)
                      ...++|.|+.||.+++..+.+..               .-+++.||++.|+-+.|+.+.+. |-|+..+|.|.+|=+-++
T Consensus        25 e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QK-LTtSDt~GlIiVWmlykg  103 (1189)
T KOG2041|consen   25 ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQK-LTTSDTSGLIIVWMLYKG  103 (1189)
T ss_pred             cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccc-ccccCCCceEEEEeeecc
Confidence            34589999999999999875431               12578999999999999987774 678888999999976543

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.07  E-value=0.0041  Score=60.80  Aligned_cols=77  Identities=25%  Similarity=0.379  Sum_probs=56.8

Q ss_pred             EEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEE
Q 013274          140 MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD  219 (446)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd  219 (446)
                      ..++++..+.+.+.++   +...++.|+.||+|.+||...+.-.  +....-..+.++|+|++. +++.|+.-|.+.+||
T Consensus       254 tsipL~s~v~~ca~sp---~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD  327 (545)
T PF11768_consen  254 TSIPLPSQVICCARSP---SEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFD  327 (545)
T ss_pred             EEEecCCcceEEecCc---ccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCc-EEEEEcCCceEEEEE
Confidence            3445566666666665   4568999999999999999876322  222334568899999987 578899999999999


Q ss_pred             ccC
Q 013274          220 IRR  222 (446)
Q Consensus       220 ~~~  222 (446)
                      +--
T Consensus       328 ~AL  330 (545)
T PF11768_consen  328 MAL  330 (545)
T ss_pred             eec
Confidence            753

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.94  E-value=0.43  Score=46.29  Aligned_cols=131  Identities=15%  Similarity=0.132  Sum_probs=75.7

Q ss_pred             ceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCC-C--CCccc----------cccceEEecc-------------cc
Q 013274           45 SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYE-G--GGHIA----------KHRSVFVVDK-------------QH   98 (446)
Q Consensus        45 ~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~-~--~~~~~----------~~~~~~~~~~-------------~~   98 (446)
                      .|..+.|++..+ =|+.|-..|.|.||.......+. .  .....          ....+.-+..             ..
T Consensus         3 ~v~~vs~a~~t~-Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAPETL-ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEETTTT-EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEecCCCc-eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            588899986444 58888899999999875443321 0  00000          0000100100             01


Q ss_pred             ccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCC---------ceEEeeec-----cCCCCceEEE
Q 013274           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPG---------KVYRTAMS-----PLAASHMLIA  164 (446)
Q Consensus        99 ~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~---------~~~~~~~~-----~~~~~~~~la  164 (446)
                      .+..++.|+++..+  |-..+|.|..||++.|-|+.....+..-....         .+.++.|.     .+.....++.
T Consensus        82 ~~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~  159 (395)
T PF08596_consen   82 LDAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL  159 (395)
T ss_dssp             E---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred             eeccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence            12347889888775  45699999999999999999888887654433         12233333     2223446788


Q ss_pred             EeeCCCcEEEEeCC
Q 013274          165 AGTEDVQVRLCDIA  178 (446)
Q Consensus       165 sgs~d~~v~vwd~~  178 (446)
                      +|...|.+.+|.+.
T Consensus       160 vGTn~G~v~~fkIl  173 (395)
T PF08596_consen  160 VGTNSGNVLTFKIL  173 (395)
T ss_dssp             EEETTSEEEEEEEE
T ss_pred             EEeCCCCEEEEEEe
Confidence            99999999999874

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.92  E-value=0.19  Score=51.53  Aligned_cols=213  Identities=15%  Similarity=0.192  Sum_probs=115.1

Q ss_pred             cCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCC-----cEEEEeCCCC---c---e
Q 013274          114 VDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV-----QVRLCDIASG---A---I  182 (446)
Q Consensus       114 ~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~-----~v~vwd~~~~---~---~  182 (446)
                      +.+..++-|+.||.|.+.+-. .+.++.++...+- -+.+--....+.+|++-..|+     .+++||++.-   .   +
T Consensus        33 s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~s-iv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c  110 (933)
T KOG2114|consen   33 SSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQS-IVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQC  110 (933)
T ss_pred             CCCceEEEeeccccEEEeccc-ceeeehheecchh-hhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcce
Confidence            367799999999988777532 1222333321111 022222222334555544443     5899999642   2   2


Q ss_pred             e--eeeeC-----CCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeecccccc
Q 013274          183 S--QTLSG-----HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSA  255 (446)
Q Consensus       183 ~--~~l~~-----h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (446)
                      .  ..+.+     ...++.+++.+.+-+ .+|.|=.+|.|..+.=.   ..+-       .|                  
T Consensus       111 ~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GD---i~RD-------rg------------------  161 (933)
T KOG2114|consen  111 LYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGD---ILRD-------RG------------------  161 (933)
T ss_pred             eeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCc---chhc-------cc------------------
Confidence            2  12222     255678888887765 46777788888877311   0000       00                  


Q ss_pred             CCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEE
Q 013274          256 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRL  335 (446)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~l  335 (446)
                                                       . ....          ...-..+|++++|..+++.++=...-..|.+
T Consensus       162 ---------------------------------s-r~~~----------~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~  197 (933)
T KOG2114|consen  162 ---------------------------------S-RQDY----------SHRGKEPITGLALRSDGKSVLFVATTEQVML  197 (933)
T ss_pred             ---------------------------------c-ceee----------eccCCCCceeeEEecCCceeEEEEecceeEE
Confidence                                             0 0000          0011357999999999986222223457999


Q ss_pred             EecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEec-ccccceEEEEE
Q 013274          336 WDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFR-GHYEYVNCCCF  404 (446)
Q Consensus       336 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~-gH~~~v~~~~f  404 (446)
                      |.+....+..   ..+..+........+++....+.++....+..++....++.-+|. ||+..+.++.|
T Consensus       198 y~l~gr~p~~---~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~~g~kk~~~~~~~  264 (933)
T KOG2114|consen  198 YSLSGRTPSL---KVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFEVGEKKEMLVFSF  264 (933)
T ss_pred             EEecCCCcce---eeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcceeeeecCCCeEEEEEEec
Confidence            9988432111   112211222222333333333666667788888887777777887 88877766653

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.90  E-value=0.11  Score=54.31  Aligned_cols=103  Identities=14%  Similarity=0.220  Sum_probs=66.4

Q ss_pred             CCcEE-EEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCC----CceEEEEeeCCCcEEEEeCCCC--ceee-ee
Q 013274          115 DTGLF-VTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAA----SHMLIAAGTEDVQVRLCDIASG--AISQ-TL  186 (446)
Q Consensus       115 ~~~~l-~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~lasgs~d~~v~vwd~~~~--~~~~-~l  186 (446)
                      +..+| ........|.--|++.|+++..+.....+.-..+.|..-    .......|-.+..+..||.+-.  +++. ..
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~  571 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS  571 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence            44443 344456889999999999998888765432233444211    1223456667889999998753  2221 11


Q ss_pred             e--CCCCCeEEEEEecCCCeEEEEeeCCCcEEEEE
Q 013274          187 S--GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD  219 (446)
Q Consensus       187 ~--~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd  219 (446)
                      .  .......|++-+.+| + +|.||.+|.||+||
T Consensus       572 k~Y~~~~~Fs~~aTt~~G-~-iavgs~~G~IRLyd  604 (794)
T PF08553_consen  572 KQYSSKNNFSCFATTEDG-Y-IAVGSNKGDIRLYD  604 (794)
T ss_pred             cccccCCCceEEEecCCc-e-EEEEeCCCcEEeec
Confidence            1  234456788877666 3 68999999999998

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.85  E-value=0.31  Score=43.20  Aligned_cols=109  Identities=14%  Similarity=0.130  Sum_probs=79.7

Q ss_pred             CcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEE
Q 013274          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT  195 (446)
Q Consensus       116 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~s  195 (446)
                      ..+++-||..+.+.--|..+|.....-.+.+.+.+.++..    ++.++.|+..+.+++.+.++|...+.+..-..--..
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vv----gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~   98 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVV----GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR   98 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEE----CCEEEEEEccCcEEEEEecchhheeeeeehhhhccc
Confidence            4577888889999999998888776655666665555442    235889999999999999999777665432221122


Q ss_pred             EEEecCCCeEEEEeeCCCcEEEEEccCCceeEEe
Q 013274          196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVL  229 (446)
Q Consensus       196 v~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~  229 (446)
                      ....+++. ++..|+.|+....-|.++.+|+...
T Consensus        99 a~~d~~~g-lIycgshd~~~yalD~~~~~cVyks  131 (354)
T KOG4649|consen   99 AQCDFDGG-LIYCGSHDGNFYALDPKTYGCVYKS  131 (354)
T ss_pred             eEEcCCCc-eEEEecCCCcEEEecccccceEEec
Confidence            33456666 5689999999999999998887653

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=96.75  E-value=1.2  Score=48.43  Aligned_cols=69  Identities=14%  Similarity=0.087  Sum_probs=48.1

Q ss_pred             cccEeEEEEeecCCcEEEEEeCCCeEEEE----ECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEE
Q 013274          103 KYAISSAIWYPVDTGLFVTGSYDHYVKVW----DTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLC  175 (446)
Q Consensus       103 ~~~V~~~~~~~~~~~~l~s~s~D~~i~iW----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vw  175 (446)
                      ...|.++.+.+ +...++.+..+|.|.+.    +..+......-...+.+.+++++|+.   .+|+..+.++++.+.
T Consensus        75 ~~~ivs~~yl~-d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~---Ella~vT~~~~l~~m  147 (928)
T PF04762_consen   75 NDKIVSFQYLA-DSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDE---ELLALVTGEGNLLLM  147 (928)
T ss_pred             CCcEEEEEecc-CCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCc---CEEEEEeCCCEEEEE
Confidence            35677777776 56677778888999999    66655554444456678889999854   467766667766654

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.61  E-value=0.0058  Score=52.75  Aligned_cols=107  Identities=18%  Similarity=0.261  Sum_probs=65.6

Q ss_pred             CCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCC-CCe
Q 013274          115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHR-DGI  193 (446)
Q Consensus       115 ~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~-~~v  193 (446)
                      -+..++.|+.|+.|.+|.....-........+.-.-....|...+..+..+++.|+.|+.|++.-++.+...-.|+ .++
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~  148 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG  148 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence            3457889999999999987621111101011110011223333444578889999999999999988887777777 444


Q ss_pred             EEEEEecCCCeEEEEe--eCCCcEEEEEccC
Q 013274          194 MTVEWSTSSEWILVTG--GCDGAIRFWDIRR  222 (446)
Q Consensus       194 ~sv~~s~~~~~~l~S~--s~Dg~I~iWd~~~  222 (446)
                      .....+..++. ++.+  |.|..++.|++..
T Consensus       149 e~~ivv~sd~~-i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  149 EELIVVGSDEF-LKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ceeEEecCCce-EEeeccccchhhhhcchhh
Confidence            44444444443 4555  6677777777654

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.61  E-value=0.13  Score=39.55  Aligned_cols=105  Identities=17%  Similarity=0.164  Sum_probs=61.6

Q ss_pred             eeEEEeec---CCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEE
Q 013274           46 INSLQVDL---TEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG  122 (446)
Q Consensus        46 v~~l~~s~---~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~  122 (446)
                      |++|++..   ++.+-|+.||.|..||+|+-+.-.              ..+      .-...|+++...  ...+|+-+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~--------------~Ei------~e~~~v~~L~~~--~~~~F~Y~   59 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIV--------------AEI------TETDKVTSLCSL--GGGRFAYA   59 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEE--------------EEE------ecccceEEEEEc--CCCEEEEE
Confidence            67787642   223679999999999999854211              000      122345555544  34689999


Q ss_pred             eCCCeEEEEECCCCeeeEEEecCCceEEeeeccCC-CCceEEEEeeCCCcEEE
Q 013274          123 SYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLA-ASHMLIAAGTEDVQVRL  174 (446)
Q Consensus       123 s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lasgs~d~~v~v  174 (446)
                      -.+|+|-+|+-..  .+........+.++.+.... .+..-|++|..+|.|.+
T Consensus        60 l~NGTVGvY~~~~--RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   60 LANGTVGVYDRSQ--RLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             ecCCEEEEEeCcc--eeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            9999998886532  22222222334444443332 22345788888887753

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.58  E-value=0.98  Score=45.48  Aligned_cols=71  Identities=18%  Similarity=0.295  Sum_probs=48.1

Q ss_pred             cEEEEEeCCCeEEEEECCCCeeeEEEecCCce---EEeeeccCCCCceEEEEee---------CCCcEEEEeCCCCceee
Q 013274          117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKV---YRTAMSPLAASHMLIAAGT---------EDVQVRLCDIASGAISQ  184 (446)
Q Consensus       117 ~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~lasgs---------~d~~v~vwd~~~~~~~~  184 (446)
                      +.++.++.|+.|..+|.++++.+-.+......   +.+..+|.-.+. +++.++         .++.+..+|.++|+.+.
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W  189 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKK-LVIIGSSGAEFFACGVRGALRAYDVETGKLLW  189 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECC-EEEEeccccccccCCCCcEEEEEECCCCceee
Confidence            57888889999999999999998877765431   112222222222 344443         36789999999999887


Q ss_pred             eeeC
Q 013274          185 TLSG  188 (446)
Q Consensus       185 ~l~~  188 (446)
                      .+..
T Consensus       190 ~~~~  193 (488)
T cd00216         190 RFYT  193 (488)
T ss_pred             Eeec
Confidence            7653

The alignment model contains an 8-bladed beta-propeller.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.38  E-value=0.48  Score=46.39  Aligned_cols=49  Identities=18%  Similarity=0.433  Sum_probs=35.5

Q ss_pred             cEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccC
Q 013274          171 QVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR  222 (446)
Q Consensus       171 ~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~  222 (446)
                      .|++|+... +++.++.=..+.+.++.|+.+.+  |+.-..||+++++|+..
T Consensus        62 ~I~iys~sG-~ll~~i~w~~~~iv~~~wt~~e~--LvvV~~dG~v~vy~~~G  110 (410)
T PF04841_consen   62 SIQIYSSSG-KLLSSIPWDSGRIVGMGWTDDEE--LVVVQSDGTVRVYDLFG  110 (410)
T ss_pred             EEEEECCCC-CEeEEEEECCCCEEEEEECCCCe--EEEEEcCCEEEEEeCCC
Confidence            489998754 45555443338999999987654  45667899999999863

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.35  E-value=0.14  Score=49.80  Aligned_cols=109  Identities=16%  Similarity=0.234  Sum_probs=69.7

Q ss_pred             EEeecCCc-EEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCce----EEEEeeCCCcEEEEeCCCCc--e
Q 013274          110 IWYPVDTG-LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHM----LIAAGTEDVQVRLCDIASGA--I  182 (446)
Q Consensus       110 ~~~~~~~~-~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~lasgs~d~~v~vwd~~~~~--~  182 (446)
                      ..+..+.. +|.++..-..+.=-|++.|+.+..+.....+.-+.+.++.....    .-+.|-.|..|.-||.+-..  .
T Consensus       339 mL~~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~k  418 (644)
T KOG2395|consen  339 MLHRADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNK  418 (644)
T ss_pred             hhhccccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcce
Confidence            33333443 45677777888888999999998888776666666666543222    23456678899999987432  2


Q ss_pred             eeeeeCC----CCCeEEEEEecCCCeEEEEeeCCCcEEEEEc
Q 013274          183 SQTLSGH----RDGIMTVEWSTSSEWILVTGGCDGAIRFWDI  220 (446)
Q Consensus       183 ~~~l~~h----~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~  220 (446)
                      +..-++|    ...-.|.+-..+| + +|.||.+|.||+||-
T Consensus       419 l~~~q~kqy~~k~nFsc~aTT~sG-~-IvvgS~~GdIRLYdr  458 (644)
T KOG2395|consen  419 LAVVQSKQYSTKNNFSCFATTESG-Y-IVVGSLKGDIRLYDR  458 (644)
T ss_pred             eeeeeccccccccccceeeecCCc-e-EEEeecCCcEEeehh
Confidence            2222233    1234455544444 4 689999999999983

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.26  E-value=0.046  Score=51.05  Aligned_cols=81  Identities=19%  Similarity=0.242  Sum_probs=68.5

Q ss_pred             ccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCC
Q 013274           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA  178 (446)
Q Consensus        99 ~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~  178 (446)
                      ..+|...|..+.++|.+..++..++.+.+|+|.|+++..++..+.....+.+.+|.-+.  ...|..|-.+|.|.+||++
T Consensus       189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde--~h~IYaGl~nG~VlvyD~R  266 (463)
T KOG1645|consen  189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDE--RHVIYAGLQNGMVLVYDMR  266 (463)
T ss_pred             ccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCC--cceeEEeccCceEEEEEcc
Confidence            45788889999999988889999999999999999998888888777777777776543  4678899999999999998


Q ss_pred             CCc
Q 013274          179 SGA  181 (446)
Q Consensus       179 ~~~  181 (446)
                      ..+
T Consensus       267 ~~~  269 (463)
T KOG1645|consen  267 QPE  269 (463)
T ss_pred             CCC
Confidence            664

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.15  E-value=1.2  Score=41.74  Aligned_cols=239  Identities=16%  Similarity=0.159  Sum_probs=117.8

Q ss_pred             CCCeEEEEECCCCeeeEEEecCCc-eEE-------eeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEE
Q 013274          124 YDHYVKVWDTNCTRVVMNFKMPGK-VYR-------TAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT  195 (446)
Q Consensus       124 ~D~~i~iWd~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~s  195 (446)
                      ..--|.+||..+-++...+.++.. ...       .+++.+. ...++.=.+.-.+|-|.|++.++.+..+.-.  .+..
T Consensus        65 RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dg-k~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~  141 (342)
T PF06433_consen   65 RTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADG-KFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWL  141 (342)
T ss_dssp             EEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTS-SEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEE
T ss_pred             ceeEEEEEecCcCcccceEecCCcchheecccccceEEccCC-cEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEE
Confidence            345799999999888887777754 221       1122111 1112222334446778888888877766532  2233


Q ss_pred             EEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCc
Q 013274          196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNG  275 (446)
Q Consensus       196 v~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (446)
                      +--+++ . -|.+-|.||++.-..+...+....-......... .+++.                        .      
T Consensus       142 iyP~~~-~-~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~-dp~f~------------------------~------  188 (342)
T PF06433_consen  142 IYPSGN-R-GFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDD-DPLFE------------------------H------  188 (342)
T ss_dssp             EEEEET-T-EEEEEETTSCEEEEEETSTSSEEEEEEEESSTTT-S-B-S-------------------------------
T ss_pred             EEecCC-C-ceEEEecCCceEEEEECCCCCEeEeeccccCCCC-ccccc------------------------c------
Confidence            322322 2 3678899999999988743321110000000000 00000                        0      


Q ss_pred             eeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeec
Q 013274          276 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT  355 (446)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~  355 (446)
                            ......+.   .+         -+..-.|.|..++++.+.-.+        ..=|.+.+....     .....+
T Consensus       189 ------~~~~~~~~---~~---------~F~Sy~G~v~~~dlsg~~~~~--------~~~~~~~t~~e~-----~~~WrP  237 (342)
T PF06433_consen  189 ------PAYSRDGG---RL---------YFVSYEGNVYSADLSGDSAKF--------GKPWSLLTDAEK-----ADGWRP  237 (342)
T ss_dssp             -------EEETTTT---EE---------EEEBTTSEEEEEEETTSSEEE--------EEEEESS-HHHH-----HTTEEE
T ss_pred             ------cceECCCC---eE---------EEEecCCEEEEEeccCCcccc--------cCcccccCcccc-----ccCcCC
Confidence                  00000000   00         001113446666666554222        234544331100     012233


Q ss_pred             CCCeEEEEcCCCcEEEEeCC-----------CceEEEEeecCceEEEecccccceEEEEEcCCCC-EEEEee-CCCcEEE
Q 013274          356 SKPIQLATTQDPAVVFVPCM-----------TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQ-ELYTGG-NDRQILV  422 (446)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~-~lvtgs-~D~~v~v  422 (446)
                      +.-..+++.+....+++-..           ..+-++|+.+++.+..+..- .++.+++.|.|.+ +|++.+ .++.+.|
T Consensus       238 GG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v  316 (342)
T PF06433_consen  238 GGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDV  316 (342)
T ss_dssp             -SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEE
T ss_pred             cceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEE
Confidence            44455666665555444211           13555677788887777642 3578999999876 666654 5789999


Q ss_pred             eCCCCCCC
Q 013274          423 WCPSRHIS  430 (446)
Q Consensus       423 W~~~~~~~  430 (446)
                      ||+.++++
T Consensus       317 ~D~~tGk~  324 (342)
T PF06433_consen  317 YDAATGKL  324 (342)
T ss_dssp             EETTT--E
T ss_pred             EeCcCCcE
Confidence            99987754

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=96.10  E-value=0.68  Score=49.64  Aligned_cols=110  Identities=16%  Similarity=0.195  Sum_probs=64.8

Q ss_pred             eEEEEEccCCCEEEE-----eecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeC----CCceEEEE
Q 013274          312 VTGLKVTEDGMYLLS-----AGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC----MTAVKAFD  382 (446)
Q Consensus       312 v~~l~fs~dg~~l~s-----gs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~d  382 (446)
                      -+.|.|--||.|+++     ...-+.|++||-+ +.-.... +   ........++..|.+..+++.-    .+.+.++.
T Consensus       198 ~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~s-e---~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE  272 (1265)
T KOG1920|consen  198 KTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTS-E---PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE  272 (1265)
T ss_pred             CceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhccc-C---cccccccceeecCCCCeEeeeeecCCCCcEEEEe
Confidence            356889999999887     3333899999966 2110000 0   0011222355556666555531    12334443


Q ss_pred             eecCceEE----EecccccceEEEEEcCCCCEEEE---eeCCCcEEEeCCCC
Q 013274          383 IWSGKTCL----TFRGHYEYVNCCCFSSQDQELYT---GGNDRQILVWCPSR  427 (446)
Q Consensus       383 ~~~~~~~~----~l~gH~~~v~~~~fSpd~~~lvt---gs~D~~v~vW~~~~  427 (446)
                       .+|-...    -++....++..++|+.++..|+.   +.....|++|....
T Consensus       273 -rNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  273 -RNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             -cCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence             2332222    24445566999999999999997   66666699997763

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=96.10  E-value=1.1  Score=41.21  Aligned_cols=96  Identities=15%  Similarity=0.070  Sum_probs=61.5

Q ss_pred             EEEeecCCcEEEEEeCCCe-EEEEECCCCeeeEEEecCCceE---EeeeccCCCCceEEEEe-----eCCCcEEEEeCC-
Q 013274          109 AIWYPVDTGLFVTGSYDHY-VKVWDTNCTRVVMNFKMPGKVY---RTAMSPLAASHMLIAAG-----TEDVQVRLCDIA-  178 (446)
Q Consensus       109 ~~~~~~~~~~l~s~s~D~~-i~iWd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~lasg-----s~d~~v~vwd~~-  178 (446)
                      ++.+|.....++.+-.-|+ +.+||..+++....+..+...+   -..|+++   ..+|.+.     ...|.|-|||.. 
T Consensus        10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~d---G~~LytTEnd~~~g~G~IgVyd~~~   86 (305)
T PF07433_consen   10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPD---GRLLYTTENDYETGRGVIGVYDAAR   86 (305)
T ss_pred             eeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCC---CCEEEEeccccCCCcEEEEEEECcC
Confidence            3455555666677766654 6788999888776665432211   1245553   3344443     346789999999 


Q ss_pred             CCceeeeeeCCCCCeEEEEEecCCCeEEE
Q 013274          179 SGAISQTLSGHRDGIMTVEWSTSSEWILV  207 (446)
Q Consensus       179 ~~~~~~~l~~h~~~v~sv~~s~~~~~~l~  207 (446)
                      +-..+..+..|.-.--.+.+.|+++.++|
T Consensus        87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvV  115 (305)
T PF07433_consen   87 GYRRIGEFPSHGIGPHELLLMPDGETLVV  115 (305)
T ss_pred             CcEEEeEecCCCcChhhEEEcCCCCEEEE
Confidence            44677788877666667788899976444

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=96.01  E-value=0.0019  Score=63.34  Aligned_cols=158  Identities=18%  Similarity=0.282  Sum_probs=98.4

Q ss_pred             ccceeEEEeecCCC-CEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEE
Q 013274           43 KGSINSLQVDLTEE-RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT  121 (446)
Q Consensus        43 ~~~v~~l~~s~~~~-~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s  121 (446)
                      +..+.|++...... .+++.|..+|.|-+=.+...-.           +    ......+|....++++|.+.|...||.
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd-----------S----s~E~tp~~ar~Ct~lAwneLDtn~LAa  120 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD-----------S----SAEVTPGYARPCTSLAWNELDTNHLAA  120 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCccc-----------c----cceecccccccccccccccccHHHHHh
Confidence            35567777543322 5888999999999887653211           1    011224677778889999988888887


Q ss_pred             Ee----CCCeEEEEECCCC--eeeEEEecCC-ceEEe-eeccCCCCceEEEEeeCCCcEEEEeCCCCc-eeeeeeCCCCC
Q 013274          122 GS----YDHYVKVWDTNCT--RVVMNFKMPG-KVYRT-AMSPLAASHMLIAAGTEDVQVRLCDIASGA-ISQTLSGHRDG  192 (446)
Q Consensus       122 ~s----~D~~i~iWd~~~~--~~~~~~~~~~-~~~~~-~~~~~~~~~~~lasgs~d~~v~vwd~~~~~-~~~~l~~h~~~  192 (446)
                      |=    .|..+.|||+.++  .+.....+.+ ..... ..++. .++.++.+|.....++++|++... ....+  .+..
T Consensus       121 gldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwl-rd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~  197 (783)
T KOG1008|consen  121 GLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWL-RDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKY  197 (783)
T ss_pred             hhhhhcccCCccceecccccCCCccccccccccccCccccccc-cCcchhhcccccchhhhhhhhhhhhhhhhh--hhhh
Confidence            63    2678999999876  2222222221 11111 22222 567789999999999999997432 11222  2345


Q ss_pred             eEEEEEecCCCeEEEEeeCCCcEEEEE
Q 013274          193 IMTVEWSTSSEWILVTGGCDGAIRFWD  219 (446)
Q Consensus       193 v~sv~~s~~~~~~l~S~s~Dg~I~iWd  219 (446)
                      +..+.++|-....+++- .||.|.+||
T Consensus       198 vqG~tVdp~~~nY~cs~-~dg~iAiwD  223 (783)
T KOG1008|consen  198 VQGITVDPFSPNYFCSN-SDGDIAIWD  223 (783)
T ss_pred             cccceecCCCCCceecc-ccCceeecc
Confidence            66677777333345554 499999999

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.98  E-value=0.028  Score=56.08  Aligned_cols=109  Identities=15%  Similarity=0.145  Sum_probs=70.4

Q ss_pred             EEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCce-EEEEeecCc---eEEE
Q 013274          316 KVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAV-KAFDIWSGK---TCLT  391 (446)
Q Consensus       316 ~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~---~~~~  391 (446)
                      +++..++|++-|+.-|.+.+|+-..+.......+.   ..+.......+++..+++.++.+.. -++-+..+.   .+..
T Consensus        40 c~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~---~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~  116 (726)
T KOG3621|consen   40 CVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEG---ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYV  116 (726)
T ss_pred             EeecCCceEEEecccceEEEEecCchhhhcccccC---ccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceee
Confidence            46677899999999999999986665432211111   1122233445555566666655543 333333321   1111


Q ss_pred             e---cccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCC
Q 013274          392 F---RGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR  427 (446)
Q Consensus       392 l---~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~  427 (446)
                      -   ..|...|+|++||+|+..|++|..-|+|-.-.++.
T Consensus       117 t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  117 TPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            1   23788999999999999999999999998887776

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=95.82  E-value=0.18  Score=52.63  Aligned_cols=99  Identities=20%  Similarity=0.242  Sum_probs=65.0

Q ss_pred             cEEEEEeCCCeEEEEECCCC--eeeEEE--ecCC--ceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCC
Q 013274          117 GLFVTGSYDHYVKVWDTNCT--RVVMNF--KMPG--KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHR  190 (446)
Q Consensus       117 ~~l~s~s~D~~i~iWd~~~~--~~~~~~--~~~~--~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~  190 (446)
                      ...+.|=.+..+..||..-.  +++..-  +...  ...+++-+.    .-.||.|+.+|.||+||--..+....|++-.
T Consensus       543 e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~----~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG  618 (794)
T PF08553_consen  543 EQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTE----DGYIAVGSNKGDIRLYDRLGKRAKTALPGLG  618 (794)
T ss_pred             CceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecC----CceEEEEeCCCcEEeecccchhhhhcCCCCC
Confidence            34556777889999997642  222110  1111  112222222    2368999999999999953333345677888


Q ss_pred             CCeEEEEEecCCCeEEEEeeCCCcEEEEEcc
Q 013274          191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIR  221 (446)
Q Consensus       191 ~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~  221 (446)
                      .+|..|..+.+|+|+|+||  +..+.|.++.
T Consensus       619 ~pI~~iDvt~DGkwilaTc--~tyLlLi~t~  647 (794)
T PF08553_consen  619 DPIIGIDVTADGKWILATC--KTYLLLIDTL  647 (794)
T ss_pred             CCeeEEEecCCCcEEEEee--cceEEEEEEe
Confidence            9999999999999987765  4678888863

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=95.80  E-value=1.8  Score=40.93  Aligned_cols=94  Identities=12%  Similarity=0.188  Sum_probs=54.4

Q ss_pred             eEEEEECCCCeeeEEEecCC--ceEEeeeccCCC----CceEEEEeeC---------C-CcEEEEeCCCC----ceeeee
Q 013274          127 YVKVWDTNCTRVVMNFKMPG--KVYRTAMSPLAA----SHMLIAAGTE---------D-VQVRLCDIASG----AISQTL  186 (446)
Q Consensus       127 ~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~----~~~~lasgs~---------d-~~v~vwd~~~~----~~~~~l  186 (446)
                      .|++.|..+.+.+..+.+..  .+.++....+..    ...+++.|+.         . |.|.++++...    ..+..+
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i   82 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI   82 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred             EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence            57777777766666655433  234333333222    1456666542         2 78999999884    222222


Q ss_pred             --eCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCc
Q 013274          187 --SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG  224 (446)
Q Consensus       187 --~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~  224 (446)
                        ....++|.++.-- ++ .++++.  .+.|.+|++...+
T Consensus        83 ~~~~~~g~V~ai~~~-~~-~lv~~~--g~~l~v~~l~~~~  118 (321)
T PF03178_consen   83 HSTEVKGPVTAICSF-NG-RLVVAV--GNKLYVYDLDNSK  118 (321)
T ss_dssp             EEEEESS-EEEEEEE-TT-EEEEEE--TTEEEEEEEETTS
T ss_pred             EEEeecCcceEhhhh-CC-EEEEee--cCEEEEEEccCcc
Confidence              2457889999865 33 444333  4789999987643

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.70  E-value=0.053  Score=54.25  Aligned_cols=120  Identities=20%  Similarity=0.301  Sum_probs=81.4

Q ss_pred             EeeeccCCCCceEEEEeeCCCcEEEEeCCCCcee-eeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEE
Q 013274          150 RTAMSPLAASHMLIAAGTEDVQVRLCDIASGAIS-QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRV  228 (446)
Q Consensus       150 ~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~-~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~  228 (446)
                      .+.+.+++....+++.|++.|.+++|+-.++... ....+-.+.+.....+++. +++|.|+..|.|-++-+.....   
T Consensus        35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v~ql~~~~p---  110 (726)
T KOG3621|consen   35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVE-YLVAAGTASGRVSVFQLNKELP---  110 (726)
T ss_pred             eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchh-HhhhhhcCCceEEeehhhccCC---
Confidence            3445555556678999999999999998877543 3333444455566677665 4577888888888886653110   


Q ss_pred             eecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCccccccccccc
Q 013274          229 LDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAH  308 (446)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  308 (446)
                                  +..                                       .         .+.+.       ...|
T Consensus       111 ------------~~~---------------------------------------~---------~~t~~-------d~~~  123 (726)
T KOG3621|consen  111 ------------RDL---------------------------------------D---------YVTPC-------DKSH  123 (726)
T ss_pred             ------------Ccc---------------------------------------e---------eeccc-------cccC
Confidence                        000                                       0         00000       0226


Q ss_pred             ccCeEEEEEccCCCEEEEeecCCcEEEEecCc
Q 013274          309 YGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES  340 (446)
Q Consensus       309 ~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~  340 (446)
                      ...|+++.|++|++.+.+|..-|+|.+-.+.+
T Consensus       124 ~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  124 KCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             CceEEEEEecccccEEeecCCCceEEEEEech
Confidence            77899999999999999999999999888776

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.60  E-value=0.61  Score=45.98  Aligned_cols=101  Identities=12%  Similarity=0.074  Sum_probs=52.3

Q ss_pred             eEEEEEccCCCEEEEeecCCcEEEE-ecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEE
Q 013274          312 VTGLKVTEDGMYLLSAGSDSRIRLW-DVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCL  390 (446)
Q Consensus       312 v~~l~fs~dg~~l~sgs~D~~i~lW-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  390 (446)
                      -...+|.+.+.| |+-...++|+++ +++.....       .........-.+.  +.++.+.+.+.+.+||..+++.++
T Consensus        71 g~~~vw~~~n~y-Av~~~~~~I~I~kn~~~~~~k-------~i~~~~~~~~If~--G~LL~~~~~~~i~~yDw~~~~~i~  140 (443)
T PF04053_consen   71 GLSFVWSSRNRY-AVLESSSTIKIYKNFKNEVVK-------SIKLPFSVEKIFG--GNLLGVKSSDFICFYDWETGKLIR  140 (443)
T ss_dssp             -SEEEE-TSSEE-EEE-TTS-EEEEETTEE-TT------------SS-EEEEE---SSSEEEEETTEEEEE-TTT--EEE
T ss_pred             eeEEEEecCccE-EEEECCCeEEEEEcCccccce-------EEcCCcccceEEc--CcEEEEECCCCEEEEEhhHcceee
Confidence            344678886654 445557889996 44322100       0111111111122  566666666678999999998888


Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCcEEEeCC
Q 013274          391 TFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP  425 (446)
Q Consensus       391 ~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~  425 (446)
                      .+...  .|..|.||+++.+++-.+.| ++.|.+-
T Consensus       141 ~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~  172 (443)
T PF04053_consen  141 RIDVS--AVKYVIWSDDGELVALVTKD-SIYILKY  172 (443)
T ss_dssp             EESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred             EEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence            88744  38899999999999877754 5566543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=95.39  E-value=2.4  Score=39.66  Aligned_cols=104  Identities=19%  Similarity=0.208  Sum_probs=64.8

Q ss_pred             eEEEEEccCCCEE-EEeecCCcEEEEecCc--Ccee-eeeeeEEEeecCCCeEEEEcCCCcEEEEeCC--CceEEEEeec
Q 013274          312 VTGLKVTEDGMYL-LSAGSDSRIRLWDVES--GRNT-LVNFETVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAFDIWS  385 (446)
Q Consensus       312 v~~l~fs~dg~~l-~sgs~D~~i~lWd~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~  385 (446)
                      -+.|+|||||+.| ++=+..++|.-|++..  +... ...+.......+.+--++...++.+..++..  ..+..|+-. 
T Consensus       165 ~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-  243 (307)
T COG3386         165 PNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-  243 (307)
T ss_pred             cCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-
Confidence            4779999999755 4446668888887752  1100 0111111222344555666667777654433  378888877 


Q ss_pred             CceEEEecccccceEEEEEc-CCCCEEEEeeC
Q 013274          386 GKTCLTFRGHYEYVNCCCFS-SQDQELYTGGN  416 (446)
Q Consensus       386 ~~~~~~l~gH~~~v~~~~fS-pd~~~lvtgs~  416 (446)
                      +++...+.-....+++++|- |+.+.|...+.
T Consensus       244 G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         244 GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence            88888888887888999996 55555554333

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.38  E-value=0.34  Score=47.75  Aligned_cols=140  Identities=16%  Similarity=0.202  Sum_probs=71.9

Q ss_pred             ceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeC
Q 013274           45 SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY  124 (446)
Q Consensus        45 ~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~  124 (446)
                      ...+|+++| .+++++. ..||.-.|+......            .          ...+.-...+|.+  ...+|+-..
T Consensus        34 ~p~~ls~np-ngr~v~V-~g~geY~iyt~~~~r------------~----------k~~G~g~~~vw~~--~n~yAv~~~   87 (443)
T PF04053_consen   34 YPQSLSHNP-NGRFVLV-CGDGEYEIYTALAWR------------N----------KAFGSGLSFVWSS--RNRYAVLES   87 (443)
T ss_dssp             --SEEEE-T-TSSEEEE-EETTEEEEEETTTTE------------E----------EEEEE-SEEEE-T--SSEEEEE-T
T ss_pred             CCeeEEECC-CCCEEEE-EcCCEEEEEEccCCc------------c----------cccCceeEEEEec--CccEEEEEC
Confidence            357899997 5777766 677888888632111            0          0112222456765  346787777


Q ss_pred             CCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCe
Q 013274          125 DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEW  204 (446)
Q Consensus       125 D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~  204 (446)
                      ..+|+|+.--.......++.+..+..+-.      +.+|+..+ ++.|.+||.++++.+.++.-.  +|..|.|+++++.
T Consensus        88 ~~~I~I~kn~~~~~~k~i~~~~~~~~If~------G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~  158 (443)
T PF04053_consen   88 SSTIKIYKNFKNEVVKSIKLPFSVEKIFG------GNLLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGEL  158 (443)
T ss_dssp             TS-EEEEETTEE-TT-----SS-EEEEE-------SSSEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSE
T ss_pred             CCeEEEEEcCccccceEEcCCcccceEEc------CcEEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCE
Confidence            89999974322233233444433332222      23444444 348999999999999888633  4899999999886


Q ss_pred             EEEEeeCCCcEEEEEcc
Q 013274          205 ILVTGGCDGAIRFWDIR  221 (446)
Q Consensus       205 ~l~S~s~Dg~I~iWd~~  221 (446)
                      +.+ .+ +.++.|++..
T Consensus       159 val-~t-~~~i~il~~~  173 (443)
T PF04053_consen  159 VAL-VT-KDSIYILKYN  173 (443)
T ss_dssp             EEE-E--S-SEEEEEE-
T ss_pred             EEE-Ee-CCeEEEEEec
Confidence            433 33 4567777643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK02888 nitrous-oxide reductase; Validated

Probab=95.36  E-value=1.2  Score=45.31  Aligned_cols=104  Identities=14%  Similarity=0.087  Sum_probs=71.2

Q ss_pred             EccCCCEEEEeecCCcEEEEecCc----CceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC--CceEEEEeecCce--
Q 013274          317 VTEDGMYLLSAGSDSRIRLWDVES----GRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAFDIWSGKT--  388 (446)
Q Consensus       317 fs~dg~~l~sgs~D~~i~lWd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~--  388 (446)
                      +.++|++...  .+++|.+.|..+    +....    ........+--+.++||+..++++..  ..+-++|+.+.+.  
T Consensus       284 ~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~----~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~  357 (635)
T PRK02888        284 AVKAGKFKTI--GGSKVPVVDGRKAANAGSALT----RYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF  357 (635)
T ss_pred             hhhCCCEEEE--CCCEEEEEECCccccCCcceE----EEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh
Confidence            3467877655  367899999887    22111    11112345666889999999888754  5789999876442  


Q ss_pred             ----------EEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCC
Q 013274          389 ----------CLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR  427 (446)
Q Consensus       389 ----------~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~  427 (446)
                                ..+..--. .....+|.++|....|--.|..|-.|+++.
T Consensus       358 ~~~~~~~~~vvaevevGl-GPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        358 DGKIKPRDAVVAEPELGL-GPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             hccCCccceEEEeeccCC-CcceEEECCCCCEEEeEeecceeEEEehHH
Confidence                      23333222 235668999999999999999999999986

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=95.21  E-value=4.1  Score=41.38  Aligned_cols=71  Identities=20%  Similarity=0.181  Sum_probs=45.8

Q ss_pred             cEEEEEeCCCeEEEEECCCCeeeEEEecCCc--eEEeeeccCCCCceEEEEee-----CCCcEEEEeCCCCceeeeee
Q 013274          117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK--VYRTAMSPLAASHMLIAAGT-----EDVQVRLCDIASGAISQTLS  187 (446)
Q Consensus       117 ~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~lasgs-----~d~~v~vwd~~~~~~~~~l~  187 (446)
                      +.++.++.|+.+...|.++++.+-.+.....  .+.+..+|.-.+..+++..+     .++.|..+|.++|+.+..+.
T Consensus       121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence            4677788899999999999998876654221  11222233222333333222     26899999999999887654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=94.92  E-value=5  Score=41.21  Aligned_cols=138  Identities=19%  Similarity=0.198  Sum_probs=72.7

Q ss_pred             CCCEEEEeeCCC------cEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCC---
Q 013274           55 EERYLLSGASDS------SVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYD---  125 (446)
Q Consensus        55 ~~~~l~s~s~Dg------~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D---  125 (446)
                      .+.+++.||.++      ++..+|..++..... +.++               +.-.-.++++.  ++.++++||.|   
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~-a~m~---------------~~r~~~~~~~~--~~~lYv~GG~~~~~  345 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSL-APMP---------------SPRCRVGVAVL--NGKLYVVGGYDSGS  345 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeec-CCCC---------------cccccccEEEE--CCEEEEEccccCCC
Confidence            456778888773      688888876643211 0000               00011122332  56889999999   


Q ss_pred             ---CeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCC-----cEEEEeCCCCceee--eeeCCCCCeEE
Q 013274          126 ---HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV-----QVRLCDIASGAISQ--TLSGHRDGIMT  195 (446)
Q Consensus       126 ---~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~-----~v~vwd~~~~~~~~--~l~~h~~~v~s  195 (446)
                         .++-.||....+-...-++...........  .++.+.|.|+.|+     +|..||.++.+.-.  .+.......-.
T Consensus       346 ~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv  423 (571)
T KOG4441|consen  346 DRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGV  423 (571)
T ss_pred             cccceEEEecCCCCceeccCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEE
Confidence               467777877666443223322222222222  2456788888876     58888888765321  11111111122


Q ss_pred             EEEecCCCeEEEEeeCCCcE
Q 013274          196 VEWSTSSEWILVTGGCDGAI  215 (446)
Q Consensus       196 v~~s~~~~~~l~S~s~Dg~I  215 (446)
                      +.+  ++ .+.+.|+.|+.-
T Consensus       424 ~~~--~g-~iYi~GG~~~~~  440 (571)
T KOG4441|consen  424 AVL--GG-KLYIIGGGDGSS  440 (571)
T ss_pred             EEE--CC-EEEEEcCcCCCc
Confidence            222  34 467788876643

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=94.92  E-value=0.076  Score=34.00  Aligned_cols=32  Identities=19%  Similarity=0.359  Sum_probs=28.7

Q ss_pred             cceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC
Q 013274          397 EYVNCCCFSSQDQELYTGGNDRQILVWCPSRH  428 (446)
Q Consensus       397 ~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~  428 (446)
                      ..|.+++|+|...+||.|+.||.|.|+.++..
T Consensus        12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~q   43 (47)
T PF12894_consen   12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQ   43 (47)
T ss_pred             CcEEEEEECCCCCEEEEEECCCeEEEEECCCc
Confidence            46899999999999999999999999988544

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=94.75  E-value=4.4  Score=39.35  Aligned_cols=222  Identities=17%  Similarity=0.140  Sum_probs=134.2

Q ss_pred             EEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEee--CCCcEEEEeCCCCceeeee
Q 013274          109 AIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGT--EDVQVRLCDIASGAISQTL  186 (446)
Q Consensus       109 ~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs--~d~~v~vwd~~~~~~~~~l  186 (446)
                      +..++.....+++...++.|.+-|+++.+.............+++.+...  .+.++-.  .++.+.+.|-.+++.....
T Consensus        79 i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~--~vYV~n~~~~~~~vsvid~~t~~~~~~~  156 (381)
T COG3391          79 VAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGK--YVYVANAGNGNNTVSVIDAATNKVTATI  156 (381)
T ss_pred             eeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCC--EEEEEecccCCceEEEEeCCCCeEEEEE
Confidence            34555455577777778999999988877776666544455667766532  3444444  4789999999998887775


Q ss_pred             eCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCc
Q 013274          187 SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAP  266 (446)
Q Consensus       187 ~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (446)
                      ..-..+ ..++++|+++.++++-..++.|.+.|.......+  ......                               
T Consensus       157 ~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~--~~~~~~-------------------------------  202 (381)
T COG3391         157 PVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR--GSVGSL-------------------------------  202 (381)
T ss_pred             ecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec--cccccc-------------------------------
Confidence            543344 8899999999777777788999999965432110  000000                               


Q ss_pred             cccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEE-eecC--CcEEEEecCcCce
Q 013274          267 QKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLS-AGSD--SRIRLWDVESGRN  343 (446)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s-gs~D--~~i~lWd~~~~~~  343 (446)
                                                             ..-...-..+.++|+|.++.. ...+  +++-..|..++..
T Consensus       203 ---------------------------------------~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v  243 (381)
T COG3391         203 ---------------------------------------VGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV  243 (381)
T ss_pred             ---------------------------------------cccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceE
Confidence                                                   000011244678899985433 3333  5888888877542


Q ss_pred             eeeeeeEEEeecCCCeEEEEcCCCcEEEEeC--CCceEEEEeecCceEEEeccccc---ceEEEEEcCCC
Q 013274          344 TLVNFETVRLQTSKPIQLATTQDPAVVFVPC--MTAVKAFDIWSGKTCLTFRGHYE---YVNCCCFSSQD  408 (446)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~l~gH~~---~v~~~~fSpd~  408 (446)
                      .....   ......+..+...|++..+++..  ...+.+.|..+......+.....   .+..+++.+..
T Consensus       244 ~~~~~---~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  310 (381)
T COG3391         244 TATDL---PVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLY  310 (381)
T ss_pred             EEecc---ccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeec
Confidence            21101   11111345567888888877762  25677777766666555443332   35556665543

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=94.74  E-value=7.7  Score=42.12  Aligned_cols=69  Identities=16%  Similarity=0.081  Sum_probs=47.0

Q ss_pred             cceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEe
Q 013274           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS  123 (446)
Q Consensus        44 ~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s  123 (446)
                      +.|.++.|-. +..-++-+..+|.|.+=|.++......                  .--..+|.++.|+| |+++++-..
T Consensus        69 ~~i~s~~fl~-d~~~i~v~~~~G~iilvd~et~~~eiv------------------g~vd~GI~aaswS~-Dee~l~liT  128 (1265)
T KOG1920|consen   69 DEIVSVQFLA-DTNSICVITALGDIILVDPETLELEIV------------------GNVDNGISAASWSP-DEELLALIT  128 (1265)
T ss_pred             cceEEEEEec-ccceEEEEecCCcEEEEcccccceeee------------------eeccCceEEEeecC-CCcEEEEEe
Confidence            5788888864 455677777888888888876543211                  01234677888887 788888777


Q ss_pred             CCCeEEEEE
Q 013274          124 YDHYVKVWD  132 (446)
Q Consensus       124 ~D~~i~iWd  132 (446)
                      .++++.+=+
T Consensus       129 ~~~tll~mT  137 (1265)
T KOG1920|consen  129 GRQTLLFMT  137 (1265)
T ss_pred             CCcEEEEEe
Confidence            777776653

>PHA02713 hypothetical protein; Provisional

Probab=94.73  E-value=1.3  Score=45.29  Aligned_cols=24  Identities=13%  Similarity=0.039  Sum_probs=18.8

Q ss_pred             CCCEEEEeecCC--cEEEEecCcCce
Q 013274          320 DGMYLLSAGSDS--RIRLWDVESGRN  343 (446)
Q Consensus       320 dg~~l~sgs~D~--~i~lWd~~~~~~  343 (446)
                      +|+..+.||.|+  .+..||+.+.+-
T Consensus       512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W  537 (557)
T PHA02713        512 DNTIMMLHCYESYMLQDTFNVYTYEW  537 (557)
T ss_pred             CCEEEEEeeecceeehhhcCcccccc
Confidence            678888899888  778888877653

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=94.64  E-value=1.7  Score=42.65  Aligned_cols=120  Identities=9%  Similarity=0.002  Sum_probs=64.6

Q ss_pred             EEEccCCCEE-EEeecCCcEEEE--ecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC--CceEEE--EeecCc
Q 013274          315 LKVTEDGMYL-LSAGSDSRIRLW--DVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAF--DIWSGK  387 (446)
Q Consensus       315 l~fs~dg~~l-~sgs~D~~i~lW--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--d~~~~~  387 (446)
                      -.|+|||++| .+...|+...+|  |+.++..  .   .+....+......++|++..++..++  +.-.+|  +...+.
T Consensus       243 P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~--~---~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~  317 (425)
T COG0823         243 PAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL--P---RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ  317 (425)
T ss_pred             ccCCCCCCEEEEEECCCCCccEEEEcCCCCcc--e---ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc
Confidence            3599999865 566778877666  5555431  1   11111223335567888887666543  233444  333332


Q ss_pred             eEEEecccccceEEEEEcCCCCEEEEeeCC-Cc--EEEeCCCCCCCCCcCCCccCc
Q 013274          388 TCLTFRGHYEYVNCCCFSSQDQELYTGGND-RQ--ILVWCPSRHISDGVDAGPMQD  440 (446)
Q Consensus       388 ~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D-~~--v~vW~~~~~~~~~~~~~~~~~  440 (446)
                       ...+.-+.+.=.+-.+||||++++-.+.. +.  |.+.++..+--.+.+.++..+
T Consensus       318 -~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~  372 (425)
T COG0823         318 -VTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLN  372 (425)
T ss_pred             -eeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccC
Confidence             22222222222277899999999977643 33  666666544324444444433

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=94.43  E-value=3.5  Score=40.55  Aligned_cols=91  Identities=18%  Similarity=0.204  Sum_probs=61.5

Q ss_pred             eEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCC--cEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCe
Q 013274          127 YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV--QVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEW  204 (446)
Q Consensus       127 ~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~--~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~  204 (446)
                      .+.++|+++++........+....-.|+|++  ..++.+...|+  .|++.|+.++...+ +..-.+.-..=.|+|+|++
T Consensus       219 ~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG--~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~  295 (425)
T COG0823         219 RIYYLDLNTGKRPVILNFNGNNGAPAFSPDG--SKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSK  295 (425)
T ss_pred             eEEEEeccCCccceeeccCCccCCccCCCCC--CEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCE
Confidence            5888899888766666666655556677764  35666666666  46777887776433 4433333346679999999


Q ss_pred             EEEEeeCCCcEEEEEc
Q 013274          205 ILVTGGCDGAIRFWDI  220 (446)
Q Consensus       205 ~l~S~s~Dg~I~iWd~  220 (446)
                      +..+.+..|.-.||-.
T Consensus       296 ivf~Sdr~G~p~I~~~  311 (425)
T COG0823         296 IVFTSDRGGRPQIYLY  311 (425)
T ss_pred             EEEEeCCCCCcceEEE
Confidence            8777777787666644

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.35  E-value=3.6  Score=36.70  Aligned_cols=70  Identities=17%  Similarity=0.081  Sum_probs=53.2

Q ss_pred             CcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeee
Q 013274          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS  187 (446)
Q Consensus       116 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~  187 (446)
                      +++++-|.+.+.+.+-+.++|.....+...+.+-.-+...  .+..++..|+.|++.+..|.++..++...+
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d--~~~glIycgshd~~~yalD~~~~~cVyksk  132 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCD--FDGGLIYCGSHDGNFYALDPKTYGCVYKSK  132 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEc--CCCceEEEecCCCcEEEecccccceEEecc
Confidence            5679999999999999999998887777655442222211  234588999999999999999988776654

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=94.18  E-value=6  Score=38.51  Aligned_cols=40  Identities=15%  Similarity=0.250  Sum_probs=28.6

Q ss_pred             eeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCcee
Q 013274          185 TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCF  226 (446)
Q Consensus       185 ~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~  226 (446)
                      .+....++|++++.|.-|  +++.|..+|.+.|-|+|....+
T Consensus        81 l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI  120 (395)
T PF08596_consen   81 LLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVI  120 (395)
T ss_dssp             EE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEE
T ss_pred             heeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEE
Confidence            344568999999998655  5788999999999999976543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=94.12  E-value=0.27  Score=48.81  Aligned_cols=77  Identities=22%  Similarity=0.345  Sum_probs=61.3

Q ss_pred             ceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeE-EEEEecCCCeEEEEeeCCCcEEEEEccCCce
Q 013274          147 KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM-TVEWSTSSEWILVTGGCDGAIRFWDIRRAGC  225 (446)
Q Consensus       147 ~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~-sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~  225 (446)
                      .+..+.+.|   .-.++|.+..+|.|-+.-++ -..+.+++-|..+++ +++|.|+|+ +|+.|=.||+|++-|..++..
T Consensus        22 ~i~~~ewnP---~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~~   96 (665)
T KOG4640|consen   22 NIKRIEWNP---KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGGR   96 (665)
T ss_pred             ceEEEEEcC---ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCCCc
Confidence            455566665   34588999999999888887 666778887888887 999999998 578899999999999988765


Q ss_pred             eEE
Q 013274          226 FRV  228 (446)
Q Consensus       226 ~~~  228 (446)
                      +..
T Consensus        97 l~~   99 (665)
T KOG4640|consen   97 LVS   99 (665)
T ss_pred             eec
Confidence            443

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.52  E-value=0.35  Score=51.06  Aligned_cols=69  Identities=23%  Similarity=0.414  Sum_probs=52.2

Q ss_pred             EEEEeeCCCcEEEEeCCCCce-eeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeec
Q 013274          162 LIAAGTEDVQVRLCDIASGAI-SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQ  231 (446)
Q Consensus       162 ~lasgs~d~~v~vwd~~~~~~-~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~  231 (446)
                      .++.|++.|.+-..|..+.-. ...-..-+++|++++|+.+|. +++.|-.+|.|.+||+..++.++.+..
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~k~l~~i~e  170 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRAKILKVITE  170 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccCCcceeeeee
Confidence            577888888898888876422 122233467999999999987 467888999999999998877766643

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=93.46  E-value=0.25  Score=31.63  Aligned_cols=30  Identities=7%  Similarity=0.106  Sum_probs=27.4

Q ss_pred             cCeEEEEEccCCCEEEEeecCCcEEEEecC
Q 013274          310 GAVTGLKVTEDGMYLLSAGSDSRIRLWDVE  339 (446)
Q Consensus       310 ~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~  339 (446)
                      ..|.+++|+|...+||.|+.||.|.++.+.
T Consensus        12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            358999999999999999999999999873

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.29  E-value=0.36  Score=47.03  Aligned_cols=97  Identities=23%  Similarity=0.265  Sum_probs=61.9

Q ss_pred             EEEeCCCeEEEEECCCCee-eEEE----ecCCceEEeeeccCC-CCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCe
Q 013274          120 VTGSYDHYVKVWDTNCTRV-VMNF----KMPGKVYRTAMSPLA-ASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI  193 (446)
Q Consensus       120 ~s~s~D~~i~iWd~~~~~~-~~~~----~~~~~~~~~~~~~~~-~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v  193 (446)
                      +.|=.|..|.-||..-... ....    +.....   .|++.. ...-+|+.||.+|.|++||--.......|++-..+|
T Consensus       398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~---nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I  474 (644)
T KOG2395|consen  398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKN---NFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAI  474 (644)
T ss_pred             EEeecCCceEEecccccCcceeeeeecccccccc---ccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCce
Confidence            3455678899999752211 1101    111111   122211 123478999999999999973333445688999999


Q ss_pred             EEEEEecCCCeEEEEeeCCCcEEEEEcc
Q 013274          194 MTVEWSTSSEWILVTGGCDGAIRFWDIR  221 (446)
Q Consensus       194 ~sv~~s~~~~~~l~S~s~Dg~I~iWd~~  221 (446)
                      ..|..+-+|+|+|+||  +..+.+=|++
T Consensus       475 ~hVdvtadGKwil~Tc--~tyLlLi~t~  500 (644)
T KOG2395|consen  475 KHVDVTADGKWILATC--KTYLLLIDTL  500 (644)
T ss_pred             eeEEeeccCcEEEEec--ccEEEEEEEe
Confidence            9999999999977554  5677777754

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.19  E-value=0.31  Score=30.29  Aligned_cols=32  Identities=13%  Similarity=0.203  Sum_probs=27.3

Q ss_pred             cceeEEEeecCCC--CEEEEeeCCCcEEEEEccc
Q 013274           44 GSINSLQVDLTEE--RYLLSGASDSSVAVYDVQR   75 (446)
Q Consensus        44 ~~v~~l~~s~~~~--~~l~s~s~Dg~i~lWd~~~   75 (446)
                      |+|.++.|||..+  ++|+-+-.-|-|.|+|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            5789999997666  7888888889999999874

It contains a characteristic DLL sequence motif.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=93.03  E-value=7.3  Score=36.70  Aligned_cols=147  Identities=14%  Similarity=0.249  Sum_probs=81.9

Q ss_pred             CCEEEEeeC----------CCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCC
Q 013274           56 ERYLLSGAS----------DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYD  125 (446)
Q Consensus        56 ~~~l~s~s~----------Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D  125 (446)
                      ..+||.|..          .|.|.++++.....        .....-..   +....+++|+++..+  ++.++++.  .
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~--------~~~~l~~i---~~~~~~g~V~ai~~~--~~~lv~~~--g  106 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPE--------NNFKLKLI---HSTEVKGPVTAICSF--NGRLVVAV--G  106 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-------------EEEEE---EEEEESS-EEEEEEE--TTEEEEEE--T
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccc--------cceEEEEE---EEEeecCcceEhhhh--CCEEEEee--c
Confidence            357776633          28899999876300        00001111   112456789888877  45444433  3


Q ss_pred             CeEEEEECCCCe-eeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCC-Cceeeeee--CCCCCeEEEEEecC
Q 013274          126 HYVKVWDTNCTR-VVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS-GAISQTLS--GHRDGIMTVEWSTS  201 (446)
Q Consensus       126 ~~i~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~-~~~~~~l~--~h~~~v~sv~~s~~  201 (446)
                      +.|.+|++...+ ......+....+...+...   ..+++.|.....+.++..+. +.....+.  ...-.++++.|-++
T Consensus       107 ~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d  183 (321)
T PF03178_consen  107 NKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVD  183 (321)
T ss_dssp             TEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-S
T ss_pred             CEEEEEEccCcccchhhheecceEEEEEEecc---ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecC
Confidence            799999998777 5444333333222333322   23678887777787774443 22122222  23445788888866


Q ss_pred             CCeEEEEeeCCCcEEEEEcc
Q 013274          202 SEWILVTGGCDGAIRFWDIR  221 (446)
Q Consensus       202 ~~~~l~S~s~Dg~I~iWd~~  221 (446)
                      ++ .++.+..+|.+.++...
T Consensus       184 ~~-~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  184 ED-TIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             SS-EEEEEETTSEEEEEEE-
T ss_pred             Cc-EEEEEcCCCeEEEEEEC
Confidence            65 57889999999998764

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=92.82  E-value=7.5  Score=36.37  Aligned_cols=70  Identities=14%  Similarity=0.153  Sum_probs=47.9

Q ss_pred             CCeEEEEcCCCcEEEEeCC-----C-----ceEEEEee-cCceEEEecccccceEEEEEcCCCCEEEEee-CCCcEEEeC
Q 013274          357 KPIQLATTQDPAVVFVPCM-----T-----AVKAFDIW-SGKTCLTFRGHYEYVNCCCFSSQDQELYTGG-NDRQILVWC  424 (446)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~-----~-----~~~~~d~~-~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs-~D~~v~vW~  424 (446)
                      ........+++.+.+....     .     .-.+|-+. .+...+.+..|-..-+.++||||++.|+-+. .-+.|..++
T Consensus       112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~  191 (307)
T COG3386         112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYD  191 (307)
T ss_pred             CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEe
Confidence            3445667777777766444     1     12566666 5777778888888889999999997776544 446666665


Q ss_pred             CC
Q 013274          425 PS  426 (446)
Q Consensus       425 ~~  426 (446)
                      .+
T Consensus       192 ~d  193 (307)
T COG3386         192 LD  193 (307)
T ss_pred             cC
Confidence            55

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=92.81  E-value=9.9  Score=36.88  Aligned_cols=189  Identities=13%  Similarity=0.160  Sum_probs=119.5

Q ss_pred             eEEEEeeCCCcEEEEeCCCCceeeeee-CCCCCeEEEEEecCCCeEEEEee--CCCcEEEEEccCCceeEEeeccccccc
Q 013274          161 MLIAAGTEDVQVRLCDIASGAISQTLS-GHRDGIMTVEWSTSSEWILVTGG--CDGAIRFWDIRRAGCFRVLDQSQSQLG  237 (446)
Q Consensus       161 ~~lasgs~d~~v~vwd~~~~~~~~~l~-~h~~~v~sv~~s~~~~~~l~S~s--~Dg~I~iWd~~~~~~~~~~~~~~~~~~  237 (446)
                      ...+....++.|.+.|.++.+....+. +.  .-..++++|+++.+.++-+  .++++.+-|..+.+....+.       
T Consensus        87 ~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~-------  157 (381)
T COG3391          87 KVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP-------  157 (381)
T ss_pred             eEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe-------
Confidence            355555557899999988877666554 33  4567889999887666655  35777777755443221110       


Q ss_pred             CCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEE
Q 013274          238 RRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKV  317 (446)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~f  317 (446)
                                                                                          .+ ..+ ..+++
T Consensus       158 --------------------------------------------------------------------vG-~~P-~~~a~  167 (381)
T COG3391         158 --------------------------------------------------------------------VG-NTP-TGVAV  167 (381)
T ss_pred             --------------------------------------------------------------------cC-CCc-ceEEE
Confidence                                                                                00 012 66889


Q ss_pred             ccCCCEE-EEeecCCcEEEEecCcCceeeeeeeE-EEeecCCCeEEEEcCCCcEEEEeCCC----ceEEEEeecCceEEE
Q 013274          318 TEDGMYL-LSAGSDSRIRLWDVESGRNTLVNFET-VRLQTSKPIQLATTQDPAVVFVPCMT----AVKAFDIWSGKTCLT  391 (446)
Q Consensus       318 s~dg~~l-~sgs~D~~i~lWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~d~~~~~~~~~  391 (446)
                      +|+|..+ ++-..+++|.+.|..+..... .... .......+..+...+++..+++....    .+...|..++.....
T Consensus       168 ~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~  246 (381)
T COG3391         168 DPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT  246 (381)
T ss_pred             CCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence            9999854 555689999999976542211 0000 11123456678888998877776543    566667666666554


Q ss_pred             -ecccccceEEEEEcCCCCEEEEeeC-CCcEEEeCCCCCC
Q 013274          392 -FRGHYEYVNCCCFSSQDQELYTGGN-DRQILVWCPSRHI  429 (446)
Q Consensus       392 -l~gH~~~v~~~~fSpd~~~lvtgs~-D~~v~vW~~~~~~  429 (446)
                       +..-......++++|+|+.+..... .+.+.+-+..+..
T Consensus       247 ~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~  286 (381)
T COG3391         247 DLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDR  286 (381)
T ss_pred             ccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence             3333324567899999999988744 4778888777654

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=92.48  E-value=0.45  Score=29.59  Aligned_cols=31  Identities=29%  Similarity=0.310  Sum_probs=25.4

Q ss_pred             cCeEEEEEccCCC---EEEEeecCCcEEEEecCc
Q 013274          310 GAVTGLKVTEDGM---YLLSAGSDSRIRLWDVES  340 (446)
Q Consensus       310 ~~v~~l~fs~dg~---~l~sgs~D~~i~lWd~~~  340 (446)
                      |+|+++.|||+..   +|+-.-.-+.|.++|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4689999998554   777777778999999985

It contains a characteristic DLL sequence motif.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=92.40  E-value=0.36  Score=41.96  Aligned_cols=102  Identities=16%  Similarity=0.143  Sum_probs=66.4

Q ss_pred             CCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeE--EEEcCCCcEEEEeC-CCceEEEEeecCceEEEecccc-
Q 013274          321 GMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQ--LATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHY-  396 (446)
Q Consensus       321 g~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~l~gH~-  396 (446)
                      +..|+.|+.||.|.+|+..-.-+..-.+..    ....+.  +....++.+..+++ .+.++.|.+.-.+.+.....|+ 
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s----~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~  145 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCS----GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF  145 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhc----ccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccC
Confidence            456788999999999987621110000000    001111  12222333444444 4678999998888888888888 


Q ss_pred             cceEEEEEcCCCCEEEEe--eCCCcEEEeCCC
Q 013274          397 EYVNCCCFSSQDQELYTG--GNDRQILVWCPS  426 (446)
Q Consensus       397 ~~v~~~~fSpd~~~lvtg--s~D~~v~vW~~~  426 (446)
                      .++..+..+..++.|+..  |.|+.++.|+++
T Consensus       146 ~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  146 ESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             CCcceeEEecCCceEEeeccccchhhhhcchh
Confidence            777777777788888888  999999999886

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=92.30  E-value=11  Score=36.14  Aligned_cols=153  Identities=11%  Similarity=0.110  Sum_probs=65.9

Q ss_pred             EeecCCCCEEEEeeCCCcEEEE--EcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCe
Q 013274           50 QVDLTEERYLLSGASDSSVAVY--DVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHY  127 (446)
Q Consensus        50 ~~s~~~~~~l~s~s~Dg~i~lW--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~  127 (446)
                      +|..++.++|.++..||.-.+|  |+++++..            .+...    .+.. ......++. ...++-.....+
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~------------QLTdg----~g~~-~~g~~~s~~-~~~~~Yv~~~~~  103 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEIT------------QLTDG----PGDN-TFGGFLSPD-DRALYYVKNGRS  103 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEE------------E---S----S-B--TTT-EE-TT-SSEEEEEETTTE
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEE------------ECccC----CCCC-ccceEEecC-CCeEEEEECCCe
Confidence            3555444666666668876666  66654321            11110    0111 111234443 445443445568


Q ss_pred             EEEEECCCCeeeEEEecCCceE-EeeeccCCCCceEEEEe----------------------eCCCcEEEEeCCCCceee
Q 013274          128 VKVWDTNCTRVVMNFKMPGKVY-RTAMSPLAASHMLIAAG----------------------TEDVQVRLCDIASGAISQ  184 (446)
Q Consensus       128 i~iWd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~lasg----------------------s~d~~v~vwd~~~~~~~~  184 (446)
                      ++--|+++.+...-+..+.... ...+...+ +...++..                      -....|...|+.+|+.-.
T Consensus       104 l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~-d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~  182 (386)
T PF14583_consen  104 LRRVDLDTLEERVVYEVPDDWKGYGTWVANS-DCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKV  182 (386)
T ss_dssp             EEEEETTT--EEEEEE--TTEEEEEEEEE-T-TSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEE
T ss_pred             EEEEECCcCcEEEEEECCcccccccceeeCC-CccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeE
Confidence            8888998877655555543321 12222111 11122111                      012235666888876544


Q ss_pred             eeeCCCCCeEEEEEecCCCeEEEEee---CCC-cEEEEEccC
Q 013274          185 TLSGHRDGIMTVEWSTSSEWILVTGG---CDG-AIRFWDIRR  222 (446)
Q Consensus       185 ~l~~h~~~v~sv~~s~~~~~~l~S~s---~Dg-~I~iWd~~~  222 (446)
                      .+. -..-+-.+.|+|....+|+=|-   +|. .-|||-++.
T Consensus       183 v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~  223 (386)
T PF14583_consen  183 VFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT  223 (386)
T ss_dssp             EEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET
T ss_pred             EEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc
Confidence            443 2344567889998877544433   344 247886654

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=92.01  E-value=9.2  Score=34.63  Aligned_cols=119  Identities=11%  Similarity=0.094  Sum_probs=74.5

Q ss_pred             cEeEEEEeecCCcEEEEEeCCC--eEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCce
Q 013274          105 AISSAIWYPVDTGLFVTGSYDH--YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI  182 (446)
Q Consensus       105 ~V~~~~~~~~~~~~l~s~s~D~--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~  182 (446)
                      ..+....+-.++.++-|.|.-|  .|+.+|+++++.+....++...+.=.++..  ++.+..-.-.++...+||.++-+.
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~  122 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKK  122 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceE
Confidence            3444455523677778887766  799999999999888877765433222222  234555667889999999999888


Q ss_pred             eeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEe
Q 013274          183 SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVL  229 (446)
Q Consensus       183 ~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~  229 (446)
                      +.++. ..+.=+.++.  +++.++ .+.....+.++|..+-+..+.+
T Consensus       123 ~~~~~-y~~EGWGLt~--dg~~Li-~SDGS~~L~~~dP~~f~~~~~i  165 (264)
T PF05096_consen  123 IGTFP-YPGEGWGLTS--DGKRLI-MSDGSSRLYFLDPETFKEVRTI  165 (264)
T ss_dssp             EEEEE--SSS--EEEE--CSSCEE-EE-SSSEEEEE-TTT-SEEEEE
T ss_pred             EEEEe-cCCcceEEEc--CCCEEE-EECCccceEEECCcccceEEEE
Confidence            87775 3456678874  455544 4444568999998765554444

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PHA02713 hypothetical protein; Provisional

Probab=91.89  E-value=2.2  Score=43.73  Aligned_cols=103  Identities=9%  Similarity=0.029  Sum_probs=54.8

Q ss_pred             CCcEEEEEeCCC-----------------------eEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCC--
Q 013274          115 DTGLFVTGSYDH-----------------------YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTED--  169 (446)
Q Consensus       115 ~~~~l~s~s~D~-----------------------~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d--  169 (446)
                      ++.+.+.||.++                       ++..||..+.+....-+++..........  .++.+.+.|+.+  
T Consensus       398 ~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~--~~~~IYv~GG~~~~  475 (557)
T PHA02713        398 DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVS--HKDDIYVVCDIKDE  475 (557)
T ss_pred             CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEE--ECCEEEEEeCCCCC
Confidence            577788887653                       47778877665433222221111111111  123455555543  


Q ss_pred             ----CcEEEEeCCC-Cce--eeeeeCCCCCeEEEEEecCCCeEEEEeeCCC--cEEEEEccC
Q 013274          170 ----VQVRLCDIAS-GAI--SQTLSGHRDGIMTVEWSTSSEWILVTGGCDG--AIRFWDIRR  222 (446)
Q Consensus       170 ----~~v~vwd~~~-~~~--~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg--~I~iWd~~~  222 (446)
                          ..+..||.++ +..  +..++.+......+.+  ++ .+.+.|+.|+  ++-.||..+
T Consensus       476 ~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~-~iyv~Gg~~~~~~~e~yd~~~  534 (557)
T PHA02713        476 KNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DN-TIMMLHCYESYMLQDTFNVYT  534 (557)
T ss_pred             CccceeEEEecCCCCCCeeEccccCcccccceeEEE--CC-EEEEEeeecceeehhhcCccc
Confidence                2478899987 542  2334433344444444  44 4678999888  566666554

>PHA03098 kelch-like protein; Provisional

Probab=91.07  E-value=15  Score=37.46  Aligned_cols=66  Identities=11%  Similarity=0.194  Sum_probs=34.6

Q ss_pred             CCcEEEEEeCC-----CeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCC------CcEEEEeCCCCce
Q 013274          115 DTGLFVTGSYD-----HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTED------VQVRLCDIASGAI  182 (446)
Q Consensus       115 ~~~~l~s~s~D-----~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d------~~v~vwd~~~~~~  182 (446)
                      ++.+++.||.+     .++..||..+.+....-+++......+...  .++.+.+.|+.+      ..+..||+.+++.
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~--~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W  418 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN--VNNLIYVIGGISKNDELLKTVECFSLNTNKW  418 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE--ECCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence            56788888876     357778877665432222221111111111  123455555521      4588999887643

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=90.75  E-value=0.55  Score=48.41  Aligned_cols=104  Identities=13%  Similarity=0.122  Sum_probs=68.6

Q ss_pred             EEccCCCEEEEee----cCCcEEEEecCcCceee-eeeeEEEeecCCCeEEEEcCCCcEEEEeC-CCceEEEEeecCceE
Q 013274          316 KVTEDGMYLLSAG----SDSRIRLWDVESGRNTL-VNFETVRLQTSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTC  389 (446)
Q Consensus       316 ~fs~dg~~l~sgs----~D~~i~lWd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~  389 (446)
                      .|+|...+++.++    ..|.|.||- .+|.+.. +.+      +.....++..|...+++.+- .+.+.+|.-.+.+..
T Consensus        22 SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~------P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h   94 (1416)
T KOG3617|consen   22 SWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY------PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH   94 (1416)
T ss_pred             ccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc------ceehhhhccChHHHHHhhccccceeEEEecCCceee
Confidence            3555555544433    356788873 3443211 111      11223355566655555542 245677877777777


Q ss_pred             EEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274          390 LTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS  426 (446)
Q Consensus       390 ~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~  426 (446)
                      .....|+.+|..+.|||||..|+|+..=|.|.+|..+
T Consensus        95 tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   95 TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            7888999999999999999999999999999999765

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=90.55  E-value=1.2  Score=44.34  Aligned_cols=90  Identities=22%  Similarity=0.331  Sum_probs=62.9

Q ss_pred             cEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCc-eE-EeeeccCCCCceEEEEeeCCCcEEEEeCCCCce
Q 013274          105 AISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK-VY-RTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI  182 (446)
Q Consensus       105 ~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~  182 (446)
                      .+.-+.|.| .-+++|.+-.+|.|-+..++ -+.+.+++.++. +. +.+|-++   +.++|.|-.||+|++.|++++..
T Consensus        22 ~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~D---GkllaVg~kdG~I~L~Dve~~~~   96 (665)
T KOG4640|consen   22 NIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPD---GKLLAVGFKDGTIRLHDVEKGGR   96 (665)
T ss_pred             ceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCC---CCEEEEEecCCeEEEEEccCCCc
Confidence            344566776 46689999999999998888 455666665443 33 5666654   67999999999999999999876


Q ss_pred             eeee-eCCCCCeEEEEEe
Q 013274          183 SQTL-SGHRDGIMTVEWS  199 (446)
Q Consensus       183 ~~~l-~~h~~~v~sv~~s  199 (446)
                      +... ..-...|.++-|+
T Consensus        97 l~~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   97 LVSFLFSVETDISKGIWD  114 (665)
T ss_pred             eeccccccccchheeecc
Confidence            5442 2234445555554

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=90.43  E-value=9.7  Score=35.46  Aligned_cols=102  Identities=11%  Similarity=0.150  Sum_probs=54.1

Q ss_pred             cCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEe-ecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCce
Q 013274          310 GAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRL-QTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKT  388 (446)
Q Consensus       310 ~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  388 (446)
                      +.+..+..++||++++.++....+.-||.....-     ..... .......+.+.+++.+.+.+-...++.=+  ....
T Consensus       145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w-----~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~--~~~~  217 (302)
T PF14870_consen  145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTW-----QPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSD--DPDD  217 (302)
T ss_dssp             --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS------EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE---TTE
T ss_pred             ceeEeEEECCCCcEEEEECcccEEEEecCCCccc-----eEEccCccceehhceecCCCCEEEEeCCcEEEEcc--CCCC
Confidence            5588888899999999888777778887653211     11111 12344567788888777776554444433  1111


Q ss_pred             EEEecc-------cccceEEEEEcCCCCEEEEeeCCC
Q 013274          389 CLTFRG-------HYEYVNCCCFSSQDQELYTGGNDR  418 (446)
Q Consensus       389 ~~~l~g-------H~~~v~~~~fSpd~~~lvtgs~D~  418 (446)
                      ..++..       -.-.+.+++|.+++...+.|+...
T Consensus       218 ~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~  254 (302)
T PF14870_consen  218 GETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGT  254 (302)
T ss_dssp             EEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-
T ss_pred             ccccccccCCcccCceeeEEEEecCCCCEEEEeCCcc
Confidence            112111       122379999999998888777653

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=89.91  E-value=20  Score=35.03  Aligned_cols=72  Identities=14%  Similarity=0.211  Sum_probs=47.1

Q ss_pred             CCceEEeeeccCCC--CceEEEEeeCCCcEEEEeCCCCceeeeeeC--CCCCeEEEEEecCCCeEEEEeeCCCcEEEEEc
Q 013274          145 PGKVYRTAMSPLAA--SHMLIAAGTEDVQVRLCDIASGAISQTLSG--HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDI  220 (446)
Q Consensus       145 ~~~~~~~~~~~~~~--~~~~lasgs~d~~v~vwd~~~~~~~~~l~~--h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~  220 (446)
                      +...+.+...+++.  ++..+..-+.||.+.+++-+.-.....+.+  ..++   +.|.+... .|++++.+..+.-|..
T Consensus       128 ~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgP---l~Y~~~tD-sfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  128 QRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGP---LCYCPRTD-SFVTASSSWTLECYKY  203 (418)
T ss_pred             ccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcC---eEEeecCC-EEEEecCceeEEEecH
Confidence            34455566656543  257888889999999999776655445543  3444   44555555 4678887777777754

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=89.90  E-value=9.8  Score=36.45  Aligned_cols=157  Identities=17%  Similarity=0.285  Sum_probs=68.4

Q ss_pred             ceeEEEeecCCCCEEEEeeC---CC-cEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEE
Q 013274           45 SINSLQVDLTEERYLLSGAS---DS-SVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV  120 (446)
Q Consensus        45 ~v~~l~~s~~~~~~l~s~s~---Dg-~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~  120 (446)
                      -+.-+.|+|.+..+|+-|=+   |. .-|||-+++...     ..   +++..-......||.       +..++|..+.
T Consensus       189 wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~-----~~---~~v~~~~~~e~~gHE-------fw~~DG~~i~  253 (386)
T PF14583_consen  189 WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS-----NV---KKVHRRMEGESVGHE-------FWVPDGSTIW  253 (386)
T ss_dssp             -EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-----------EESS---TTEEEEEE-------EE-TTSS-EE
T ss_pred             cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC-----cc---eeeecCCCCcccccc-------cccCCCCEEE
Confidence            34678899988777766522   33 248897654321     00   111000000111332       3333555432


Q ss_pred             E-----EeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeC----------------CCcEEEEeCCC
Q 013274          121 T-----GSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTE----------------DVQVRLCDIAS  179 (446)
Q Consensus       121 s-----~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~----------------d~~v~vwd~~~  179 (446)
                      -     ++.+..|.-.|+.++.......++...+ ...++   +..+++.=+.                +..|++++++.
T Consensus       254 y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~~~H-~~ss~---Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~  329 (386)
T PF14583_consen  254 YDSYTPGGQDFWIAGYDPDTGERRRLMEMPWCSH-FMSSP---DGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEA  329 (386)
T ss_dssp             EEEEETTT--EEEEEE-TTT--EEEEEEE-SEEE-EEE-T---TSSEEEEEE-------------------EEEEEETTT
T ss_pred             EEeecCCCCceEEEeeCCCCCCceEEEeCCceee-eEEcC---CCCEEEecCCCCCccccccccceecCCcEEEEecccc
Confidence            2     2335567777777776544344432221 11112   2234332122                22577888887


Q ss_pred             Cceee---------eeeCCCC-CeEEEEEecCCCeEEEEeeCCCcEEEEEc
Q 013274          180 GAISQ---------TLSGHRD-GIMTVEWSTSSEWILVTGGCDGAIRFWDI  220 (446)
Q Consensus       180 ~~~~~---------~l~~h~~-~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~  220 (446)
                      +....         .+.+|.. .=.-+.|+||++++|.++...|...||-+
T Consensus       330 ~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v  380 (386)
T PF14583_consen  330 GRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV  380 (386)
T ss_dssp             TEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred             CceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence            65321         1122211 11457899999999999999998888854

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=89.64  E-value=5  Score=38.90  Aligned_cols=99  Identities=12%  Similarity=0.164  Sum_probs=51.5

Q ss_pred             CCeEEEEECCCCeeeEEEecCCc---eEEeeeccCCCCceEEEEeeCCCcEEEEeC-CCCce----eeeeeC--------
Q 013274          125 DHYVKVWDTNCTRVVMNFKMPGK---VYRTAMSPLAASHMLIAAGTEDVQVRLCDI-ASGAI----SQTLSG--------  188 (446)
Q Consensus       125 D~~i~iWd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~lasgs~d~~v~vwd~-~~~~~----~~~l~~--------  188 (446)
                      -+++.+||+.+.+.+.++.+...   ..-+-+.+......=++.+-...+|..|-- +.+..    +-.+..        
T Consensus       221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l  300 (461)
T PF05694_consen  221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL  300 (461)
T ss_dssp             --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred             cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence            57899999999999998887532   334445443322222333333445544433 44421    111211        


Q ss_pred             ---------CCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCC
Q 013274          189 ---------HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA  223 (446)
Q Consensus       189 ---------h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~  223 (446)
                               -..-|+.|.+|.|++++.+++=.+|.||.||+...
T Consensus       301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP  344 (461)
T PF05694_consen  301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP  344 (461)
T ss_dssp             -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred             cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence                     03457889999999988778778999999999764

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.52  E-value=1.7  Score=46.24  Aligned_cols=99  Identities=22%  Similarity=0.309  Sum_probs=64.9

Q ss_pred             cEEEEEeCCCeEEEEECCCCee--eEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeE
Q 013274          117 GLFVTGSYDHYVKVWDTNCTRV--VMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM  194 (446)
Q Consensus       117 ~~l~s~s~D~~i~iWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~  194 (446)
                      ..++.|+.-|.+-..|....-.  .......+++.++++..   ++.+++.|-.+|.|.+||+..++..+.+..|..+.+
T Consensus       100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~---dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t  176 (1206)
T KOG2079|consen  100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ---DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT  176 (1206)
T ss_pred             eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC---CCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence            3567777777777777654211  22223345677777765   456899999999999999999998888877766665


Q ss_pred             EEEE---ecCCCeEEEEeeCCCcEEEEEcc
Q 013274          195 TVEW---STSSEWILVTGGCDGAIRFWDIR  221 (446)
Q Consensus       195 sv~~---s~~~~~~l~S~s~Dg~I~iWd~~  221 (446)
                      +|-+   ..++. .+.++..-|.  +|.+.
T Consensus       177 ~vi~v~~t~~nS-~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  177 GVIFVGRTSQNS-KLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             eEEEEEEeCCCc-EEEEccCCCc--eEEEE
Confidence            5443   22333 4566655554  67653

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=89.00  E-value=20  Score=33.71  Aligned_cols=162  Identities=17%  Similarity=0.175  Sum_probs=84.6

Q ss_pred             CCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECC
Q 013274           55 EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTN  134 (446)
Q Consensus        55 ~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~  134 (446)
                      +++-+.+-..||++.-..+...-+.     ..+...++..+....-.|.      .+ ...+..++=-++.|.|.--|+.
T Consensus       146 ~~~~F~~lC~DGsl~~v~Ld~~Gk~-----~~~~t~~F~~~~dp~f~~~------~~-~~~~~~~~F~Sy~G~v~~~dls  213 (342)
T PF06433_consen  146 GNRGFSMLCGDGSLLTVTLDADGKE-----AQKSTKVFDPDDDPLFEHP------AY-SRDGGRLYFVSYEGNVYSADLS  213 (342)
T ss_dssp             ETTEEEEEETTSCEEEEEETSTSSE-----EEEEEEESSTTTS-B-S--------EE-ETTTTEEEEEBTTSEEEEEEET
T ss_pred             CCCceEEEecCCceEEEEECCCCCE-----eEeeccccCCCCccccccc------ce-ECCCCeEEEEecCCEEEEEecc
Confidence            3445667788999888888632211     0111111111110000111      11 1234455556788888888876


Q ss_pred             CCeee--EEEec-----------CCceEEeeeccCCCCceEEEEe-e-----CCC--cEEEEeCCCCceeeeeeCCCCCe
Q 013274          135 CTRVV--MNFKM-----------PGKVYRTAMSPLAASHMLIAAG-T-----EDV--QVRLCDIASGAISQTLSGHRDGI  193 (446)
Q Consensus       135 ~~~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~lasg-s-----~d~--~v~vwd~~~~~~~~~l~~h~~~v  193 (446)
                      .....  ..+..           +|...-+++++.. +..+++-- .     .|+  .|-++|+.+++.+.+++- ..++
T Consensus       214 g~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~-~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~  291 (342)
T PF06433_consen  214 GDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAAS-GRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPI  291 (342)
T ss_dssp             TSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTT-TEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEE
T ss_pred             CCcccccCcccccCccccccCcCCcceeeeeecccc-CeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCcc
Confidence            54432  22221           1112223443321 12222221 1     122  477889999999988873 2357


Q ss_pred             EEEEEecCCCeEEEEe-eCCCcEEEEEccCCceeEEee
Q 013274          194 MTVEWSTSSEWILVTG-GCDGAIRFWDIRRAGCFRVLD  230 (446)
Q Consensus       194 ~sv~~s~~~~~~l~S~-s~Dg~I~iWd~~~~~~~~~~~  230 (446)
                      .+|.++.+.+-.|++. ..++.+.+||..+++.++.++
T Consensus       292 ~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~  329 (342)
T PF06433_consen  292 DSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE  329 (342)
T ss_dssp             SEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred             ceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence            8999998877555544 468999999999998887775

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=88.84  E-value=29  Score=36.27  Aligned_cols=105  Identities=13%  Similarity=0.184  Sum_probs=64.4

Q ss_pred             CCcEEEEEeCCCeEEEEECCC-------C-------------eeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEE
Q 013274          115 DTGLFVTGSYDHYVKVWDTNC-------T-------------RVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRL  174 (446)
Q Consensus       115 ~~~~l~s~s~D~~i~iWd~~~-------~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~v  174 (446)
                      +...|+.|.+||.|.+|.+++       .             ++-..+........++++.. ....+||+++....|.|
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~-~~~rlIAVSsNs~~VTV  191 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDY-KKSRLIAVSSNSQEVTV  191 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEec-CcceEEEEecCCceEEE
Confidence            446889999999999997531       0             01122223334445555421 23457888777776766


Q ss_pred             EeCCC--Cce-eeeeeCCCCCeEEEEEecCC---C--eEEEEeeCCCcEEEEEc
Q 013274          175 CDIAS--GAI-SQTLSGHRDGIMTVEWSTSS---E--WILVTGGCDGAIRFWDI  220 (446)
Q Consensus       175 wd~~~--~~~-~~~l~~h~~~v~sv~~s~~~---~--~~l~S~s~Dg~I~iWd~  220 (446)
                      |=...  .+. ...-..|...|.+|+|.++.   .  ..+++++-.|.+.+|++
T Consensus       192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            64432  221 11111367789999998765   1  24678888999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=88.82  E-value=2  Score=25.89  Aligned_cols=29  Identities=7%  Similarity=0.091  Sum_probs=19.1

Q ss_pred             cccceEEEEEcCCCCEEEEe-eCC--CcEEEe
Q 013274          395 HYEYVNCCCFSSQDQELYTG-GND--RQILVW  423 (446)
Q Consensus       395 H~~~v~~~~fSpd~~~lvtg-s~D--~~v~vW  423 (446)
                      ....-...+|||||++|+=+ ..+  +.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            34456788999999998844 444  555555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=87.40  E-value=1.9  Score=41.34  Aligned_cols=101  Identities=18%  Similarity=0.216  Sum_probs=58.4

Q ss_pred             ccCCCEEEEe---------ecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCce
Q 013274          318 TEDGMYLLSA---------GSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKT  388 (446)
Q Consensus       318 s~dg~~l~sg---------s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  388 (446)
                      |||+++++..         +..+.+.++|+++++....  ..   .......+..+|++..++......+.++++.+++.
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l--~~---~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~   75 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPL--TP---PPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQE   75 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEES--S----EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEEC--cC---CccccccceeecCCCeeEEEecCceEEEECCCCCe
Confidence            5677766542         2345688999998643221  11   12345667889999888877777777777655533


Q ss_pred             EE-Eecc---------------c-ccceEEEEEcCCCCEEEEeeCC-CcEEEe
Q 013274          389 CL-TFRG---------------H-YEYVNCCCFSSQDQELYTGGND-RQILVW  423 (446)
Q Consensus       389 ~~-~l~g---------------H-~~~v~~~~fSpd~~~lvtgs~D-~~v~vW  423 (446)
                      .. +..|               . -+.-..+-||||+++|+....| ..|+.+
T Consensus        76 ~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~  128 (353)
T PF00930_consen   76 TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEY  128 (353)
T ss_dssp             EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EE
T ss_pred             EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceE
Confidence            21 2222               0 1223568899999999976654 445554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=86.74  E-value=24  Score=31.97  Aligned_cols=117  Identities=15%  Similarity=0.065  Sum_probs=64.0

Q ss_pred             eEEEEEccCCCEEEEeecCCcEEEEe-cCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeC----CCceEEEEee--
Q 013274          312 VTGLKVTEDGMYLLSAGSDSRIRLWD-VESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC----MTAVKAFDIW--  384 (446)
Q Consensus       312 v~~l~fs~dg~~l~sgs~D~~i~lWd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~d~~--  384 (446)
                      ++.-.|+++|...+....+...+++. ..++......+..... ......+..++|+..++...    ...+.+=-+.  
T Consensus        68 l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~-~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~  146 (253)
T PF10647_consen   68 LTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGL-RGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRD  146 (253)
T ss_pred             cccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEeccccc-CCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeC
Confidence            44456888877666666666667663 2333222221111111 11445688999998876654    3344443332  


Q ss_pred             -cC------ceEEEecccccceEEEEEcCCCCEEEEeeC-CCcEEE-eCCCCCC
Q 013274          385 -SG------KTCLTFRGHYEYVNCCCFSSQDQELYTGGN-DRQILV-WCPSRHI  429 (446)
Q Consensus       385 -~~------~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~-D~~v~v-W~~~~~~  429 (446)
                       .+      ............+++++|.+++++++-+.. +..+.. ..++...
T Consensus       147 ~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG~~  200 (253)
T PF10647_consen  147 GDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDGGP  200 (253)
T ss_pred             CCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeEEEEccCCc
Confidence             22      112233344568999999999999886554 443444 4455443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=86.30  E-value=26  Score=31.94  Aligned_cols=143  Identities=15%  Similarity=0.138  Sum_probs=77.8

Q ss_pred             CCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECC
Q 013274           55 EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTN  134 (446)
Q Consensus        55 ~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~  134 (446)
                      .++.|+-|..+| +.++++.......         .         ..+...|..+...+.-+ .|+.-+ |+.+.++++.
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~---------~---------i~~~~~I~ql~vl~~~~-~llvLs-d~~l~~~~L~   64 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPT---------R---------ILKLSSITQLSVLPELN-LLLVLS-DGQLYVYDLD   64 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccce---------e---------EeecceEEEEEEecccC-EEEEEc-CCccEEEEch
Confidence            467888898888 8999883221110         0         11223377777776433 444444 4999999987


Q ss_pred             CCeeeE---------------EEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC-----ceeeeeeCCCCCeE
Q 013274          135 CTRVVM---------------NFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-----AISQTLSGHRDGIM  194 (446)
Q Consensus       135 ~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~-----~~~~~l~~h~~~v~  194 (446)
                      .-....               .......+...+......+...++.+. ...|.+|.....     ...+.+. -.+.+.
T Consensus        65 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~  142 (275)
T PF00780_consen   65 SLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEIS-LPDPPS  142 (275)
T ss_pred             hhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEE-cCCCcE
Confidence            543332               111122233222111222333444444 347888877553     3444444 347789


Q ss_pred             EEEEecCCCeEEEEeeCCCcEEEEEccCCc
Q 013274          195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAG  224 (446)
Q Consensus       195 sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~  224 (446)
                      ++.|.++  . ++-|. .+...+.|+.++.
T Consensus       143 ~i~~~~~--~-i~v~~-~~~f~~idl~~~~  168 (275)
T PF00780_consen  143 SIAFLGN--K-ICVGT-SKGFYLIDLNTGS  168 (275)
T ss_pred             EEEEeCC--E-EEEEe-CCceEEEecCCCC
Confidence            9999843  3 34444 3458888887654

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=85.95  E-value=33  Score=32.81  Aligned_cols=91  Identities=22%  Similarity=0.216  Sum_probs=51.5

Q ss_pred             CeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceee-eeeC-------C--------
Q 013274          126 HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ-TLSG-------H--------  189 (446)
Q Consensus       126 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~-~l~~-------h--------  189 (446)
                      +.+.++|+++++...............++|++   ..+|... ++.|.++++.++...+ +..|       -        
T Consensus        23 ~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g---~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEE   98 (353)
T PF00930_consen   23 GDYYIYDIETGEITPLTPPPPKLQDAKWSPDG---KYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEE   98 (353)
T ss_dssp             EEEEEEETTTTEEEESS-EETTBSEEEE-SSS---TEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHH
T ss_pred             eeEEEEecCCCceEECcCCccccccceeecCC---CeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecccc
Confidence            46889999987654432223445667788763   3455543 6789999988774332 1112       0        


Q ss_pred             -CCCeEEEEEecCCCeEEEEeeCCCcEEEEEc
Q 013274          190 -RDGIMTVEWSTSSEWILVTGGCDGAIRFWDI  220 (446)
Q Consensus       190 -~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~  220 (446)
                       -+.-.++-|||++++++..--.+..|+.+.+
T Consensus        99 v~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~  130 (353)
T PF00930_consen   99 VFDRRSAVWWSPDSKYLAFLRFDEREVPEYPL  130 (353)
T ss_dssp             TSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEE
T ss_pred             ccccccceEECCCCCEEEEEEECCcCCceEEe
Confidence             1123567899999986544444555666554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=85.42  E-value=4.4  Score=24.33  Aligned_cols=31  Identities=16%  Similarity=0.383  Sum_probs=22.3

Q ss_pred             CCCCCeEEEEEecCCCeEEEEeeCC--CcEEEE
Q 013274          188 GHRDGIMTVEWSTSSEWILVTGGCD--GAIRFW  218 (446)
Q Consensus       188 ~h~~~v~sv~~s~~~~~~l~S~s~D--g~I~iW  218 (446)
                      .....-....|+|++++++.++..+  |.-.||
T Consensus         6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            3445667889999999887787777  776666

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=85.14  E-value=29  Score=31.37  Aligned_cols=43  Identities=14%  Similarity=0.238  Sum_probs=27.9

Q ss_pred             eeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeE
Q 013274          184 QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFR  227 (446)
Q Consensus       184 ~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~  227 (446)
                      +.+.+-...+..++|.|+.+.+++.....+.|.-.++. ++.++
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr   57 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLR   57 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEE
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEE
Confidence            45566667799999999877777777778888777753 44433

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=84.97  E-value=3.9  Score=39.63  Aligned_cols=95  Identities=15%  Similarity=0.261  Sum_probs=44.8

Q ss_pred             cCCcEEEEecCcCceeeeeeeEEEeecC--CCeEE--EEcCCCcEEEEeCCCceEEEEee---c----CceEEEeccc--
Q 013274          329 SDSRIRLWDVESGRNTLVNFETVRLQTS--KPIQL--ATTQDPAVVFVPCMTAVKAFDIW---S----GKTCLTFRGH--  395 (446)
Q Consensus       329 ~D~~i~lWd~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~d~~---~----~~~~~~l~gH--  395 (446)
                      -..++++||+.+.+..+    .+.+...  .+..+  +..|+...-|+++.-+-.+|-..   +    -+.+.++..-  
T Consensus       220 yG~~l~vWD~~~r~~~Q----~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v  295 (461)
T PF05694_consen  220 YGHSLHVWDWSTRKLLQ----TIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKV  295 (461)
T ss_dssp             S--EEEEEETTTTEEEE----EEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE-
T ss_pred             ccCeEEEEECCCCcEee----EEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCccc
Confidence            35789999999875422    2222211  23333  34455556666654433444322   1    2233333221  


Q ss_pred             ---------------ccceEEEEEcCCCCEEE-EeeCCCcEEEeCCCC
Q 013274          396 ---------------YEYVNCCCFSSQDQELY-TGGNDRQILVWCPSR  427 (446)
Q Consensus       396 ---------------~~~v~~~~fSpd~~~lv-tgs~D~~v~vW~~~~  427 (446)
                                     ..-|+++.+|.|.++|. ++=.+|.||.+|++.
T Consensus       296 ~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD  343 (461)
T PF05694_consen  296 EGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD  343 (461)
T ss_dssp             -SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred             CcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence                           34579999999999988 555699999998763

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=84.90  E-value=38  Score=33.16  Aligned_cols=115  Identities=17%  Similarity=0.248  Sum_probs=55.4

Q ss_pred             ceeEEEeecCCCCEEEEe-eCCC----cEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEE
Q 013274           45 SINSLQVDLTEERYLLSG-ASDS----SVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF  119 (446)
Q Consensus        45 ~v~~l~~s~~~~~~l~s~-s~Dg----~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l  119 (446)
                      .+...++|| ++++||-+ +..|    ++++.|++++....         ..+       ..-  ....+.|.+.+..++
T Consensus       125 ~~~~~~~Sp-dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~---------d~i-------~~~--~~~~~~W~~d~~~~~  185 (414)
T PF02897_consen  125 SLGGFSVSP-DGKRLAYSLSDGGSEWYTLRVFDLETGKFLP---------DGI-------ENP--KFSSVSWSDDGKGFF  185 (414)
T ss_dssp             EEEEEEETT-TSSEEEEEEEETTSSEEEEEEEETTTTEEEE---------EEE-------EEE--ESEEEEECTTSSEEE
T ss_pred             EeeeeeECC-CCCEEEEEecCCCCceEEEEEEECCCCcCcC---------Ccc-------ccc--ccceEEEeCCCCEEE
Confidence            344567886 46655543 5555    49999998874321         000       000  111256776333344


Q ss_pred             EEEeC----------CCeEEEEECCCCeee--EEEecCCc---eEEeeeccCCCCceEEEEeeC--C-CcEEEEeCCCC
Q 013274          120 VTGSY----------DHYVKVWDTNCTRVV--MNFKMPGK---VYRTAMSPLAASHMLIAAGTE--D-VQVRLCDIASG  180 (446)
Q Consensus       120 ~s~s~----------D~~i~iWd~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~lasgs~--d-~~v~vwd~~~~  180 (446)
                      .+.-.          ...|.+|.+-+....  ..+.....   ...+..+.+.  ..+++....  + ..+.+.|+..+
T Consensus       186 y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~--~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  186 YTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDG--RYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             EEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTS--SEEEEEEESSSSEEEEEEEECCCT
T ss_pred             EEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcc--cEEEEEEEccccCCeEEEEecccc
Confidence            44422          234788888665432  23332222   2344444432  234433332  2 45788888764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=84.83  E-value=52  Score=34.05  Aligned_cols=72  Identities=14%  Similarity=0.036  Sum_probs=41.3

Q ss_pred             CCeEEEEcCCCcEEEEeCCCceEE---EEeecCce-E---EEec-ccccceEEEEEcCCCCEEEEeeCCCcEEEe--CCC
Q 013274          357 KPIQLATTQDPAVVFVPCMTAVKA---FDIWSGKT-C---LTFR-GHYEYVNCCCFSSQDQELYTGGNDRQILVW--CPS  426 (446)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~~~~-~---~~l~-gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW--~~~  426 (446)
                      .+..+..++|+..++......+.+   ..-..|+. +   ..+. +-...+.+++|.+++++++ +..+....+|  .++
T Consensus       449 ~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V-~~~~~~~~v~~v~vD  527 (591)
T PRK13616        449 PISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVV-GRSDPEHPVWYVNLD  527 (591)
T ss_pred             CcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEE-EecCCCCceEEEecC
Confidence            466788999998776654454444   22233431 1   1122 2233468899999998664 4445555566  445


Q ss_pred             CCC
Q 013274          427 RHI  429 (446)
Q Consensus       427 ~~~  429 (446)
                      ++.
T Consensus       528 G~~  530 (591)
T PRK13616        528 GSN  530 (591)
T ss_pred             Ccc
Confidence            444

>PHA03098 kelch-like protein; Provisional

Probab=84.79  E-value=18  Score=36.83  Aligned_cols=103  Identities=16%  Similarity=0.182  Sum_probs=50.2

Q ss_pred             CCcEEEEEeCC------CeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCC--------CcEEEEeCCCC
Q 013274          115 DTGLFVTGSYD------HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTED--------VQVRLCDIASG  180 (446)
Q Consensus       115 ~~~~l~s~s~D------~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d--------~~v~vwd~~~~  180 (446)
                      ++.+++.||.+      ..+..||+.+.+....-.++......+...  .++.+++.|+.+        ..+.+||.+++
T Consensus       389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  466 (534)
T PHA03098        389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY--HDGKIYVIGGISYIDNIKVYNIVESYNPVTN  466 (534)
T ss_pred             CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE--ECCEEEEECCccCCCCCcccceEEEecCCCC
Confidence            56777777742      468888987765433222221111111111  123455555432        23889999887


Q ss_pred             ceeee--eeCCCCCeEEEEEecCCCeEEEEeeCC-----CcEEEEEccC
Q 013274          181 AISQT--LSGHRDGIMTVEWSTSSEWILVTGGCD-----GAIRFWDIRR  222 (446)
Q Consensus       181 ~~~~~--l~~h~~~v~sv~~s~~~~~~l~S~s~D-----g~I~iWd~~~  222 (446)
                      +....  +.........+.+  +++ +++.|+.+     +.|..||..+
T Consensus       467 ~W~~~~~~~~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~yd~~~  512 (534)
T PHA03098        467 KWTELSSLNFPRINASLCIF--NNK-IYVVGGDKYEYYINEIEVYDDKT  512 (534)
T ss_pred             ceeeCCCCCcccccceEEEE--CCE-EEEEcCCcCCcccceeEEEeCCC
Confidence            53321  1111111122222  444 56666654     4677777654

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=84.60  E-value=0.52  Score=48.95  Aligned_cols=117  Identities=14%  Similarity=0.202  Sum_probs=72.7

Q ss_pred             CccccEeEEEEeecCCcEEEEEeCCCeEEEEECCC--CeeeEEEe------cCCceEEeeeccCCCCceEEEEeeCCCcE
Q 013274          101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNC--TRVVMNFK------MPGKVYRTAMSPLAASHMLIAAGTEDVQV  172 (446)
Q Consensus       101 gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~--~~~~~~~~------~~~~~~~~~~~~~~~~~~~lasgs~d~~v  172 (446)
                      |-.++|-.+.|...+...++  -.=|.+.|||++-  |+....+.      .......+.+.++..+...+..+-.++.|
T Consensus       130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i  207 (1283)
T KOG1916|consen  130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEI  207 (1283)
T ss_pred             cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCce
Confidence            45566666655443333333  2237899999752  32211111      12234567777777666778888888999


Q ss_pred             EEEeCCCCceeeeeeCCCCCeEEEE-----------EecCCCeEEEEeeCCCcEEEEEcc
Q 013274          173 RLCDIASGAISQTLSGHRDGIMTVE-----------WSTSSEWILVTGGCDGAIRFWDIR  221 (446)
Q Consensus       173 ~vwd~~~~~~~~~l~~h~~~v~sv~-----------~s~~~~~~l~S~s~Dg~I~iWd~~  221 (446)
                      ++...++... ..+.+|...+..++           +||||. +|+.++.||.+++|.+.
T Consensus       208 ~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  208 RLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             eEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeeee
Confidence            9887765533 34455765544433           688887 57888899999988753

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=84.53  E-value=17  Score=35.09  Aligned_cols=102  Identities=17%  Similarity=0.189  Sum_probs=52.3

Q ss_pred             eEEEEEccCCCEEEEee-----------cCC-cEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceE
Q 013274          312 VTGLKVTEDGMYLLSAG-----------SDS-RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVK  379 (446)
Q Consensus       312 v~~l~fs~dg~~l~sgs-----------~D~-~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (446)
                      ..+|+|.++|+.+++-.           ..+ +|.+++-..+.-.......+......+.-+++.+++  +++++...+.
T Consensus        16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i~   93 (367)
T TIGR02604        16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDIL   93 (367)
T ss_pred             CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeEE
Confidence            57789999999877643           223 677775443211000000111112234446666666  4444444444


Q ss_pred             EEEeecC------c--eE-EEecc----cccceEEEEEcCCCCEEEEee
Q 013274          380 AFDIWSG------K--TC-LTFRG----HYEYVNCCCFSSQDQELYTGG  415 (446)
Q Consensus       380 ~~d~~~~------~--~~-~~l~g----H~~~v~~~~fSpd~~~lvtgs  415 (446)
                      .+.-.++      +  .+ ..+..    +...++.++|.|||.+.++-+
T Consensus        94 ~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        94 FLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             EEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            3321111      1  11 22332    234478999999998877655

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=84.46  E-value=4.5  Score=35.79  Aligned_cols=27  Identities=26%  Similarity=0.658  Sum_probs=23.4

Q ss_pred             EccCCCEEEEeecCCcEEEEecCcCce
Q 013274          317 VTEDGMYLLSAGSDSRIRLWDVESGRN  343 (446)
Q Consensus       317 fs~dg~~l~sgs~D~~i~lWd~~~~~~  343 (446)
                      +..++.+|+.-+.+|.+++||+.+++.
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~   44 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKA   44 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCee
Confidence            556789999999999999999998754

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=84.12  E-value=19  Score=37.08  Aligned_cols=137  Identities=18%  Similarity=0.209  Sum_probs=71.4

Q ss_pred             CCCEEEEeeCCC-----cEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCC---
Q 013274           55 EERYLLSGASDS-----SVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDH---  126 (446)
Q Consensus        55 ~~~~l~s~s~Dg-----~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~---  126 (446)
                      +|.+-|.||.||     +|..||..+........       .   . ....+|.       ....++.+.+.||.|+   
T Consensus       380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-------m---~-~~r~~~g-------v~~~~g~iYi~GG~~~~~~  441 (571)
T KOG4441|consen  380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-------M---L-TRRSGHG-------VAVLGGKLYIIGGGDGSSN  441 (571)
T ss_pred             CCEEEEEeccccccccccEEEecCCCCcccccCC-------C---C-cceeeeE-------EEEECCEEEEEcCcCCCcc
Confidence            577888888886     47777776654321100       0   0 0011222       2223688889998664   


Q ss_pred             ---eEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCC-----cEEEEeCCCCceeee--eeCCCCCeEEE
Q 013274          127 ---YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV-----QVRLCDIASGAISQT--LSGHRDGIMTV  196 (446)
Q Consensus       127 ---~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~-----~v~vwd~~~~~~~~~--l~~h~~~v~sv  196 (446)
                         ++..+|..+.+....-++...........  .+..+.+.|+.|+     +|..+|.++.+....  +......+-.+
T Consensus       442 ~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~--~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~  519 (571)
T KOG4441|consen  442 CLNSVECYDPETNTWTLIAPMNTRRSGFGVAV--LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV  519 (571)
T ss_pred             ccceEEEEcCCCCceeecCCcccccccceEEE--ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEE
Confidence               46777777665443333322111111111  2345677777665     388899888764322  22233333333


Q ss_pred             EEecCCCeEEEEeeCCCc
Q 013274          197 EWSTSSEWILVTGGCDGA  214 (446)
Q Consensus       197 ~~s~~~~~~l~S~s~Dg~  214 (446)
                      ..  +++ +.+.|+.||.
T Consensus       520 ~~--~~~-ly~vGG~~~~  534 (571)
T KOG4441|consen  520 VL--GGK-LYAVGGFDGN  534 (571)
T ss_pred             EE--CCE-EEEEecccCc
Confidence            32  333 5678887653

>PHA02790 Kelch-like protein; Provisional

Probab=83.38  E-value=33  Score=34.47  Aligned_cols=100  Identities=14%  Similarity=0.127  Sum_probs=51.0

Q ss_pred             CCcEEEEEeCCC---eEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceee--eeeCC
Q 013274          115 DTGLFVTGSYDH---YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ--TLSGH  189 (446)
Q Consensus       115 ~~~~l~s~s~D~---~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~--~l~~h  189 (446)
                      ++.+.+.||.++   ++..||..+.+-...-.++-+....+...  .++.+.+.|+   .+.+||.+++....  .+...
T Consensus       362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~--~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~  436 (480)
T PHA02790        362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALV--FGRRLFLVGR---NAEFYCESSNTWTLIDDPIYP  436 (480)
T ss_pred             CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEE--ECCEEEEECC---ceEEecCCCCcEeEcCCCCCC
Confidence            677888888653   47788887665443222221111111111  1334566663   57889988775322  22222


Q ss_pred             CCCeEEEEEecCCCeEEEEeeCC-----CcEEEEEccC
Q 013274          190 RDGIMTVEWSTSSEWILVTGGCD-----GAIRFWDIRR  222 (446)
Q Consensus       190 ~~~v~sv~~s~~~~~~l~S~s~D-----g~I~iWd~~~  222 (446)
                      ......+.+  +++ +.+.|+.+     .+|..||..+
T Consensus       437 r~~~~~~v~--~~~-IYviGG~~~~~~~~~ve~Yd~~~  471 (480)
T PHA02790        437 RDNPELIIV--DNK-LLLIGGFYRGSYIDTIEVYNNRT  471 (480)
T ss_pred             ccccEEEEE--CCE-EEEECCcCCCcccceEEEEECCC
Confidence            222223332  444 66777754     3466666554

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=82.51  E-value=32  Score=29.92  Aligned_cols=21  Identities=24%  Similarity=0.256  Sum_probs=16.4

Q ss_pred             ccccceEEEEEcCCC-CEEEEe
Q 013274          394 GHYEYVNCCCFSSQD-QELYTG  414 (446)
Q Consensus       394 gH~~~v~~~~fSpd~-~~lvtg  414 (446)
                      .|.+-.+.+|+-|++ ++++||
T Consensus       226 ~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         226 SNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             cccccccceeecCcCCeEEEec
Confidence            345567899999987 778888

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.46  E-value=13  Score=33.85  Aligned_cols=98  Identities=15%  Similarity=0.167  Sum_probs=63.4

Q ss_pred             EEccCCCEEEEeecC-----CcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCC--------------
Q 013274          316 KVTEDGMYLLSAGSD-----SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMT--------------  376 (446)
Q Consensus       316 ~fs~dg~~l~sgs~D-----~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------  376 (446)
                      .|||||.+|...-+|     |.|-+||...+-+...++.+   ..-.+-.+...+|+.+++++.+.              
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t---~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNl  196 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFST---HGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNL  196 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceeccccc---CCcCcceeEEecCCcEEEEeCCceecccccCccccch
Confidence            499999998765444     67899998854333333322   12345567777888887776431              


Q ss_pred             -----ceEEEEeecCceE--EEec--ccccceEEEEEcCCCCEEEEeeC
Q 013274          377 -----AVKAFDIWSGKTC--LTFR--GHYEYVNCCCFSSQDQELYTGGN  416 (446)
Q Consensus       377 -----~~~~~d~~~~~~~--~~l~--gH~~~v~~~~fSpd~~~lvtgs~  416 (446)
                           +..+.|..+|.++  ++|+  -|...|..++.-+||+.++-|-.
T Consensus       197 dsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy  245 (366)
T COG3490         197 DSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQY  245 (366)
T ss_pred             hhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEe
Confidence                 2344555566653  4565  56677888888899888876643

>PHA02790 Kelch-like protein; Provisional

Probab=82.32  E-value=58  Score=32.73  Aligned_cols=66  Identities=12%  Similarity=0.118  Sum_probs=35.5

Q ss_pred             CCcEEEEEeCC--CeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCC---CcEEEEeCCCCce
Q 013274          115 DTGLFVTGSYD--HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTED---VQVRLCDIASGAI  182 (446)
Q Consensus       115 ~~~~l~s~s~D--~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d---~~v~vwd~~~~~~  182 (446)
                      ++.+.+.||.+  .++..||..+.+....-+++......+...  .++.+.+.|+.+   ..+..||.+++..
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W  388 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQW  388 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEE
Confidence            67788888864  467888876654433222322221111111  133455666544   3577888877643

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=80.89  E-value=20  Score=31.70  Aligned_cols=81  Identities=12%  Similarity=0.142  Sum_probs=52.5

Q ss_pred             EEEEEeCCCeEEEEE--CCCCee-----eEEEecC---Cc--eEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeee
Q 013274          118 LFVTGSYDHYVKVWD--TNCTRV-----VMNFKMP---GK--VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT  185 (446)
Q Consensus       118 ~l~s~s~D~~i~iWd--~~~~~~-----~~~~~~~---~~--~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~  185 (446)
                      ..++-+.+.+|.-||  ..+|..     +..+.-.   ++  ...+++   +..+.+.++.-..+.|...|..+|+.+..
T Consensus       172 fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~I---D~eG~L~Va~~ng~~V~~~dp~tGK~L~e  248 (310)
T KOG4499|consen  172 FYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTI---DTEGNLYVATFNGGTVQKVDPTTGKILLE  248 (310)
T ss_pred             EEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceE---ccCCcEEEEEecCcEEEEECCCCCcEEEE
Confidence            445667888898898  444432     2222210   00  001111   12345666667788999999999999999


Q ss_pred             eeCCCCCeEEEEEecC
Q 013274          186 LSGHRDGIMTVEWSTS  201 (446)
Q Consensus       186 l~~h~~~v~sv~~s~~  201 (446)
                      ++=....|+|++|-..
T Consensus       249 iklPt~qitsccFgGk  264 (310)
T KOG4499|consen  249 IKLPTPQITSCCFGGK  264 (310)
T ss_pred             EEcCCCceEEEEecCC
Confidence            8888999999999644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	446
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		2e-54
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		5e-12
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		5e-04
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		1e-10
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-10
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		1e-09
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		1e-09
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		1e-09
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-09
2gnq_A	336	Structure Of Wdr5 Length = 336		6e-07
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-09
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		6e-07
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-09
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		7e-07
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-09
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		6e-07
2h9l_A	329	Wdr5delta23 Length = 329		2e-09
2h9l_A	329	Wdr5delta23 Length = 329		7e-07
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-09
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		7e-07
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-09
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		7e-07
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-09
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		7e-07
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-09
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		6e-07
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-09
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		7e-07
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-09
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		6e-07
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-09
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		7e-07
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-09
2g99_A	308	Structural Basis For The Specific Recognition Of Me		7e-07
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-09
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		6e-07
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-09
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		6e-07
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-09
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		7e-07
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-09
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		7e-07
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		3e-09
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		7e-09
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		6e-08
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		1e-05
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		7e-08
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		1e-05
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		5e-07
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		2e-04
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		6e-07
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		9e-07
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-06
2pm9_A	416	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		3e-06
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		3e-06
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		2e-05
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		3e-04
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		4e-05
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		2e-04
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		8e-05
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		8e-05
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		1e-04
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		1e-04
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		1e-04
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		1e-04
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		1e-04
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		2e-04
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		3e-04
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		3e-04
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		7e-04
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		8e-04

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score =  209 bits (533), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 127/429 (29%), Positives = 197/429 (45%), Gaps = 68/429 (15%)
Query: 1   MWKEIGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLL 60
           M   +  R+ G   P        + R+  L+L+  +++   H G IN+L ++  E RY+L
Sbjct: 1   MLGFLSARQTGLEDPLRLRRAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYML 60
Query: 61  SGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV 120
           SG SD  + +YD++ ++           ++V  + + H   H+Y++ +  WYP DTG+F 
Sbjct: 61  SGGSDGVIVLYDLENSSRQS----YYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFT 116
Query: 121 TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG 180
           + S+D  +KVWDTN  +    F     VY   MSP++  H L+A GT   +V+LCD+ SG
Sbjct: 117 SSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG 176
Query: 181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA-GCFRVLDQSQSQLGRR 239
           + S  L GHR  I+ V WS   ++IL T   D  ++ WD+RRA GC   LDQ        
Sbjct: 177 SCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHN------ 230
Query: 240 PPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGML 299
                           G+ S     A    +   NG+  +S G           LH   +
Sbjct: 231 ----------------GKKSQAVESANTAHNGKVNGLCFTSDG-----------LHLLTV 263
Query: 300 SSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPI 359
            + +R                            +RLW+  +G NTLVN+  V   + K +
Sbjct: 264 GTDNR----------------------------MRLWNSSNGENTLVNYGKVCNNSKKGL 295
Query: 360 QLATT--QDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND 417
           +   +       VFVP  + +  + ++SG+     +GHY+ V+CC F S  QELY+G  D
Sbjct: 296 KFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRD 355
Query: 418 RQILVWCPS 426
             IL W PS
Sbjct: 356 CNILAWVPS 364

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 93/196 (47%), Gaps = 29/196 (14%)
Query: 36  KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVD 95
           K I++ H GS+  LQ D   ER +++G+SDS+V V+DV      E    +  H       
Sbjct: 166 KRILTGHTGSVLCLQYD---ERVIITGSSDSTVRVWDVNTG---EMLNTLIHH------- 212
Query: 96  KQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWD-TNCTRVVMNFKMPGKVYRTAMS 154
                       + +    + G+ VT S D  + VWD  + T + +   + G  +R A++
Sbjct: 213 ----------CEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVG--HRAAVN 260
Query: 155 PLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGA 214
            +      I + + D  +++ + ++    +TL+GH+ GI  +++      ++V+G  D  
Sbjct: 261 VVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR---LVVSGSSDNT 317
Query: 215 IRFWDIRRAGCFRVLD 230
           IR WDI    C RVL+
Sbjct: 318 IRLWDIECGACLRVLE 333

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/263 (19%), Positives = 97/263 (36%), Gaps = 49/263 (18%)
Query: 163 IAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR 222
           I +G  D  +++ D  +    + L+GH   ++ +++    E +++TG  D  +R WD+  
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD---ERVIITGSSDSTVRVWDVNT 202
Query: 223 AGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVG 282
                 L      +     +L  + +    ++  ++ S+                     
Sbjct: 203 GEMLNTL------IHHCEAVLHLRFNNGMMVTCSKDRSI--------------------- 235
Query: 283 RIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR 342
                 +V     P  ++ +     H  AV    V  D  Y++SA  D  I++W+  +  
Sbjct: 236 ------AVWDMASPTDITLRRVLVGHRAAVN--VVDFDDKYIVSASGDRTIKVWNTSTC- 286
Query: 343 NTLVNFETVRLQTSKPIQLATTQ--DPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVN 400
                 E VR        +A  Q  D  VV       ++ +DI  G       GH E V 
Sbjct: 287 ------EFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR 340
Query: 401 CCCFSSQDQELYTGGNDRQILVW 423
           C  F   ++ + +G  D +I VW
Sbjct: 341 CIRF--DNKRIVSGAYDGKIKVW 361

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 79/189 (41%), Gaps = 17/189 (8%)
Query: 58  YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117
           +LLS + D +V ++D+         G I   +++F        GH   +    W+ +   
Sbjct: 194 HLLSASDDHTVCLWDINAGP---KEGKIVDAKAIFT-------GHSAVVEDVAWHLLHES 243
Query: 118 LFVTGSYDHYVKVWDT--NCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLC 175
           LF + + D  + +WDT  N T    +           +S    S  ++A G+ D  V L 
Sbjct: 244 LFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 303
Query: 176 DIASGAIS-QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQS 234
           D+ +  +   T   H+D I  V WS  +E IL + G D  +  WD+ + G     +QS  
Sbjct: 304 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIG----EEQSAE 359
Query: 235 QLGRRPPLL 243
                PP L
Sbjct: 360 DAEDGPPEL 368

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 79/189 (41%), Gaps = 17/189 (8%)
Query: 58  YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117
           +LLS + D +V ++D+         G I   +++F        GH   +    W+ +   
Sbjct: 194 HLLSASDDHTVCLWDINAGP---KEGKIVDAKAIFT-------GHSAVVEDVAWHLLHES 243
Query: 118 LFVTGSYDHYVKVWDT--NCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLC 175
           LF + + D  + +WDT  N T    +           +S    S  ++A G+ D  V L 
Sbjct: 244 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 303
Query: 176 DIASGAIS-QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQS 234
           D+ +  +   T   H+D I  V WS  +E IL + G D  +  WD+ + G     +QS  
Sbjct: 304 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIG----EEQSAE 359
Query: 235 QLGRRPPLL 243
                PP L
Sbjct: 360 DAEDGPPEL 368

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 17/189 (8%)
Query: 58  YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117
           YLLS + D ++ ++D+  AT  E    +   +++F        GH   +    W+ +   
Sbjct: 198 YLLSASDDHTICLWDI-NATPKEH--RVIDAKNIFT-------GHTAVVEDVAWHLLHES 247
Query: 118 LFVTGSYDHYVKVWDT--NCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLC 175
           LF + + D  + +WDT  N T    +           +S    S  ++A G+ D  V L 
Sbjct: 248 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 307
Query: 176 DIASGAIS-QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQS 234
           D+ +  +   +   H+D I  V+WS  +E IL + G D  +  WD+ + G     +QS  
Sbjct: 308 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG----EEQSTE 363
Query: 235 QLGRRPPLL 243
                PP L
Sbjct: 364 DAEDGPPEL 372

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 17/189 (8%)
Query: 58  YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117
           YLLS + D ++ ++D+  AT  E    +   +++F        GH   +    W+ +   
Sbjct: 196 YLLSASDDHTICLWDI-NATPKEH--RVIDAKNIFT-------GHTAVVEDVAWHLLHES 245
Query: 118 LFVTGSYDHYVKVWDT--NCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLC 175
           LF + + D  + +WDT  N T    +           +S    S  ++A G+ D  V L 
Sbjct: 246 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 305
Query: 176 DIASGAIS-QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQS 234
           D+ +  +   +   H+D I  V+WS  +E IL + G D  +  WD+ + G     +QS  
Sbjct: 306 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG----EEQSTE 361
Query: 235 QLGRRPPLL 243
                PP L
Sbjct: 362 DAEDGPPEL 370

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 17/189 (8%)
Query: 58  YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117
           YLLS + D ++ ++D+  AT  E    +   +++F        GH   +    W+ +   
Sbjct: 200 YLLSASDDHTICLWDI-NATPKEH--RVIDAKNIFT-------GHTAVVEDVAWHLLHES 249
Query: 118 LFVTGSYDHYVKVWDT--NCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLC 175
           LF + + D  + +WDT  N T    +           +S    S  ++A G+ D  V L 
Sbjct: 250 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 309
Query: 176 DIASGAIS-QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQS 234
           D+ +  +   +   H+D I  V+WS  +E IL + G D  +  WD+ + G     +QS  
Sbjct: 310 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG----EEQSTE 365
Query: 235 QLGRRPPLL 243
                PP L
Sbjct: 366 DAEDGPPEL 374

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
           GHK  IS   W   D+ L V+ S D  +K+WD +  + +   K     V+    +P +  
Sbjct: 87  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 144
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
             LI +G+ D  VR+ D+ +G   +TL  H D +  V ++     ++V+   DG  R WD
Sbjct: 145 --LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 201
Query: 220 IRRAGCFRVL 229
                C + L
Sbjct: 202 TASGQCLKTL 211

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 308 HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFE-TVRLQTSKPIQLATTQD 366
           H  AV+ +K + +G +L S+ +D  I++W    G+     FE T+         +A + D
Sbjct: 46  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSD 100
Query: 367 P-AVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 423
              +V       +K +D+ SGK   T +GH  YV CC F+ Q   + +G  D  + +W
Sbjct: 101 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 158

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
           GHK  IS   W   D+ L V+ S D  +K+WD +  + +   K     V+    +P +  
Sbjct: 85  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 142
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
             LI +G+ D  VR+ D+ +G   +TL  H D +  V ++     ++V+   DG  R WD
Sbjct: 143 --LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 199
Query: 220 IRRAGCFRVL 229
                C + L
Sbjct: 200 TASGQCLKTL 209

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 308 HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFE-TVRLQTSKPIQLATTQD 366
           H  AV+ +K + +G +L S+ +D  I++W    G+     FE T+         +A + D
Sbjct: 44  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSD 98
Query: 367 P-AVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 423
              +V       +K +D+ SGK   T +GH  YV CC F+ Q   + +G  D  + +W
Sbjct: 99  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
           GHK  IS   W   D+ L V+ S D  +K+WD +  + +   K     V+    +P +  
Sbjct: 69  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 126
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
             LI +G+ D  VR+ D+ +G   +TL  H D +  V ++     ++V+   DG  R WD
Sbjct: 127 --LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 183
Query: 220 IRRAGCFRVL 229
                C + L
Sbjct: 184 TASGQCLKTL 193

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 308 HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFE-TVRLQTSKPIQLATTQD 366
           H  AV+ +K + +G +L S+ +D  I++W    G+     FE T+         +A + D
Sbjct: 28  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSD 82
Query: 367 P-AVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 423
              +V       +K +D+ SGK   T +GH  YV CC F+ Q   + +G  D  + +W
Sbjct: 83  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
           GHK  IS   W   D+ L V+ S D  +K+WD +  + +   K     V+    +P +  
Sbjct: 69  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 126
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
             LI +G+ D  VR+ D+ +G   +TL  H D +  V ++     ++V+   DG  R WD
Sbjct: 127 --LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 183
Query: 220 IRRAGCFRVL 229
                C + L
Sbjct: 184 TASGQCLKTL 193

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 308 HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFE-TVRLQTSKPIQLATTQD 366
           H  AV+ +K + +G +L S+ +D  I++W    G+     FE T+         +A + D
Sbjct: 28  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSD 82
Query: 367 P-AVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 423
              +V       +K +D+ SGK   T +GH  YV CC F+ Q   + +G  D  + +W
Sbjct: 83  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
           GHK  IS   W   D+ L V+ S D  +K+WD +  + +   K     V+    +P +  
Sbjct: 80  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 137
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
             LI +G+ D  VR+ D+ +G   +TL  H D +  V ++     ++V+   DG  R WD
Sbjct: 138 --LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 194
Query: 220 IRRAGCFRVL 229
                C + L
Sbjct: 195 TASGQCLKTL 204

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 308 HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFE-TVRLQTSKPIQLATTQD 366
           H  AV+ +K + +G +L S+ +D  I++W    G+     FE T+         +A + D
Sbjct: 39  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSD 93
Query: 367 P-AVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 423
              +V       +K +D+ SGK   T +GH  YV CC F+ Q   + +G  D  + +W
Sbjct: 94  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 151

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
           GHK  IS   W   D+ L V+ S D  +K+WD +  + +   K     V+    +P +  
Sbjct: 66  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 123
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
             LI +G+ D  VR+ D+ +G   +TL  H D +  V ++     ++V+   DG  R WD
Sbjct: 124 --LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 180
Query: 220 IRRAGCFRVL 229
                C + L
Sbjct: 181 TASGQCLKTL 190

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 7/119 (5%)
Query: 307 AHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFE-TVRLQTSKPIQLATTQ 365
            H  AV+ +K + +G +L S+ +D  I++W    G+     FE T+         +A + 
Sbjct: 24  GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSS 78
Query: 366 DP-AVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 423
           D   +V       +K +D+ SGK   T +GH  YV CC F+ Q   + +G  D  + +W
Sbjct: 79  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
           GHK  IS   W   D+ L V+ S D  +K+WD +  + +   K     V+    +P +  
Sbjct: 64  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 121
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
             LI +G+ D  VR+ D+ +G   +TL  H D +  V ++     ++V+   DG  R WD
Sbjct: 122 --LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 178
Query: 220 IRRAGCFRVL 229
                C + L
Sbjct: 179 TASGQCLKTL 188

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 308 HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFE-TVRLQTSKPIQLATTQD 366
           H  AV+ +K + +G +L S+ +D  I++W    G+     FE T+         +A + D
Sbjct: 23  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSD 77
Query: 367 P-AVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 423
              +V       +K +D+ SGK   T +GH  YV CC F+ Q   + +G  D  + +W
Sbjct: 78  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 135

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
           GHK  IS   W   D+ L V+ S D  +K+WD +  + +   K     V+    +P +  
Sbjct: 63  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 120
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
             LI +G+ D  VR+ D+ +G   +TL  H D +  V ++     ++V+   DG  R WD
Sbjct: 121 --LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 177
Query: 220 IRRAGCFRVL 229
                C + L
Sbjct: 178 TASGQCLKTL 187

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 308 HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFE-TVRLQTSKPIQLATTQD 366
           H  AV+ +K + +G +L S+ +D  I++W    G+     FE T+         +A + D
Sbjct: 22  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSD 76
Query: 367 P-AVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 423
              +V       +K +D+ SGK   T +GH  YV CC F+ Q   + +G  D  + +W
Sbjct: 77  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
           GHK  IS   W   D+ L V+ S D  +K+WD +  + +   K     V+    +P +  
Sbjct: 66  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 123
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
             LI +G+ D  VR+ D+ +G   +TL  H D +  V ++     ++V+   DG  R WD
Sbjct: 124 --LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 180
Query: 220 IRRAGCFRVL 229
                C + L
Sbjct: 181 TASGQCLKTL 190

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 308 HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFE-TVRLQTSKPIQLATTQD 366
           H  AV+ +K + +G +L S+ +D  I++W    G+     FE T+         +A + D
Sbjct: 25  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSD 79
Query: 367 P-AVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 423
              +V       +K +D+ SGK   T +GH  YV CC F+ Q   + +G  D  + +W
Sbjct: 80  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
           GHK  IS   W   D+ L V+ S D  +K+WD +  + +   K     V+    +P +  
Sbjct: 66  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 123
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
             LI +G+ D  VR+ D+ +G   +TL  H D +  V ++     ++V+   DG  R WD
Sbjct: 124 --LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 180
Query: 220 IRRAGCFRVL 229
                C + L
Sbjct: 181 TASGQCLKTL 190

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 7/119 (5%)
Query: 307 AHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFE-TVRLQTSKPIQLATTQ 365
            H  AV+ +K + +G +L S+ +D  I++W    G+     FE T+         +A + 
Sbjct: 24  GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSS 78
Query: 366 DP-AVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 423
           D   +V       +K +D+ SGK   T +GH  YV CC F+ Q   + +G  D  + +W
Sbjct: 79  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
           GHK  IS   W   D+ L V+ S D  +K+WD +  + +   K     V+    +P +  
Sbjct: 69  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 126
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
             LI +G+ D  VR+ D+ +G   +TL  H D +  V ++     ++V+   DG  R WD
Sbjct: 127 --LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 183
Query: 220 IRRAGCFRVL 229
                C + L
Sbjct: 184 TASGQCLKTL 193

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 308 HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFE-TVRLQTSKPIQLATTQD 366
           H  AV+ +K + +G +L S+ +D  I++W    G+     FE T+         +A + D
Sbjct: 28  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSD 82
Query: 367 P-AVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 423
              +V       +K +D+ SGK   T +GH  YV CC F+ Q   + +G  D  + +W
Sbjct: 83  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
           GHK  IS   W   D+ L V+ S D  +K+WD +  + +   K     V+    +P +  
Sbjct: 63  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 120
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
             LI +G+ D  VR+ D+ +G   +TL  H D +  V ++     ++V+   DG  R WD
Sbjct: 121 --LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 177
Query: 220 IRRAGCFRVL 229
                C + L
Sbjct: 178 TASGQCLKTL 187

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 308 HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFE-TVRLQTSKPIQLATTQD 366
           H  AV+ +K + +G +L S+ +D  I++W    G+     FE T+         +A + D
Sbjct: 22  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSD 76
Query: 367 P-AVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 423
              +V       +K +D+ SGK   T +GH  YV CC F+ Q   + +G  D  + +W
Sbjct: 77  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
           GHK  IS   W   D+ L V+ S D  +K+WD +  + +   K     V+    +P +  
Sbjct: 59  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 116
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
             LI +G+ D  VR+ D+ +G   +TL  H D +  V ++     ++V+   DG  R WD
Sbjct: 117 --LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 173
Query: 220 IRRAGCFRVL 229
                C + L
Sbjct: 174 TASGQCLKTL 183

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 308 HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFE-TVRLQTSKPIQLATTQD 366
           H  AV+ +K + +G +L S+ +D  I++W    G+     FE T+         +A + D
Sbjct: 18  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSD 72
Query: 367 P-AVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 423
              +V       +K +D+ SGK   T +GH  YV CC F+ Q   + +G  D  + +W
Sbjct: 73  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 130

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
           GHK  IS   W   D+ L V+ S D  +K+WD +  + +   K     V+    +P +  
Sbjct: 68  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 125
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
             LI +G+ D  VR+ D+ +G   +TL  H D +  V ++     ++V+   DG  R WD
Sbjct: 126 --LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 182
Query: 220 IRRAGCFRVL 229
                C + L
Sbjct: 183 TASGQCLKTL 192

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 308 HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFE-TVRLQTSKPIQLATTQD 366
           H  AV+ +K + +G +L S+ +D  I++W    G+     FE T+         +A + D
Sbjct: 27  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSD 81
Query: 367 P-AVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 423
              +V       +K +D+ SGK   T +GH  YV CC F+ Q   + +G  D  + +W
Sbjct: 82  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 139

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
           GHK  IS   W   D+ L V+ S D  +K+WD +  + +   K     V+    +P +  
Sbjct: 66  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 123
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
             LI +G+ D  VR+ D+ +G   +TL  H D +  V ++     ++V+   DG  R WD
Sbjct: 124 --LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 180
Query: 220 IRRAGCFRVL 229
                C + L
Sbjct: 181 TASGQCLKTL 190

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 308 HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFE-TVRLQTSKPIQLATTQD 366
           H  AV+ +K + +G +L S+ +D  I++W    G+     FE T+         +A + D
Sbjct: 25  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSD 79
Query: 367 P-AVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 423
              +V       +K +D+ SGK   T +GH  YV CC F+ Q   + +G  D  + +W
Sbjct: 80  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
           GHK  IS   W   D+ L V+ S D  +K+WD +  + +   K     V+    +P +  
Sbjct: 66  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 123
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
             LI +G+ D  VR+ D+ +G   +TL  H D +  V ++     ++V+   DG  R WD
Sbjct: 124 --LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 180
Query: 220 IRRAGCFRVL 229
                C + L
Sbjct: 181 TASGQCLKTL 190

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 62/294 (21%), Positives = 107/294 (36%), Gaps = 54/294 (18%)
Query: 140 MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS 199
           + F + G     +    + +   +AA + D  +++     G   +T+SGH+ GI  V WS
Sbjct: 18  LKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNS 259
           + S  +LV+   D  ++ WD+    C                         K+L    N 
Sbjct: 78  SDSN-LLVSASDDKTLKIWDVSSGKCL------------------------KTLKGHSNY 112
Query: 260 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE 319
                   + +   +G    SV     K     +  P          AH   V+ +    
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP----------AHSDPVSAVHFNR 162
Query: 320 DGMYLLSAGSDSRIRLWDVESGR--NTLVNFET-----VRLQTSKPIQLATTQDPAVVFV 372
           DG  ++S+  D   R+WD  SG+   TL++ +      V+   +    LA T D      
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD------ 216
Query: 373 PCMTAVKAFDIWSGKTCLTFRGHYEYVNCCC--FS-SQDQELYTGGNDRQILVW 423
                +K +D   GK   T+ GH     C    FS +  + + +G  D  + +W
Sbjct: 217 ---NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 267

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAAS 159
           GHK  IS   W   D+ L V+ S D  +K+WD +  + +   K     V+    +P +  
Sbjct: 62  GHKLGISDVAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN- 119
Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
             LI +G+ D  VR+ D+ +G   +TL  H D +  V ++     ++V+   DG  R WD
Sbjct: 120 --LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD 176
Query: 220 IRRAGCFRVL 229
                C + L
Sbjct: 177 TASGQCLKTL 186

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 308 HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFE-TVRLQTSKPIQLATTQD 366
           H  AV+ +K + +G +L S+ +D  I++W    G+     FE T+         +A + D
Sbjct: 21  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSD 75
Query: 367 P-AVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 423
              +V       +K +D+ SGK   T +GH  YV CC F+ Q   + +G  D  + +W
Sbjct: 76  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 133

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 17/189 (8%)
Query: 58  YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG 117
           +LLS + D ++ ++D+         G +   +++F        GH   +    W+ +   
Sbjct: 192 HLLSASDDHTICLWDISAVP---KEGKVVDAKTIFT-------GHTAVVEDVSWHLLHES 241
Query: 118 LFVTGSYDHYVKVWDT--NCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLC 175
           LF + + D  + +WDT  N T    +           +S    S  ++A G+ D  V L 
Sbjct: 242 LFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 301
Query: 176 DIASGAIS-QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQS 234
           D+ +  +   +   H+D I  V+WS  +E IL + G D  +  WD+ + G     +QS  
Sbjct: 302 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIG----EEQSPE 357
Query: 235 QLGRRPPLL 243
                PP L
Sbjct: 358 DAEDGPPEL 366

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 100/262 (38%), Gaps = 61/262 (23%)
Query: 162 LIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR 221
            +A G ED  +R+ DI +  I   L GH   I ++++  S +  LV+G  D  +R WD+R
Sbjct: 137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLR 195
Query: 222 RAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV 281
              C                      S++ S+  G  +        K  A G+  R   V
Sbjct: 196 TGQC----------------------SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRV 233
Query: 282 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG 341
                 G + +RL     S  +  T H  +V  +  T DG  ++S   D  ++LW++++ 
Sbjct: 234 WD-SETGFLVERLD----SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA 288
Query: 342 RNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNC 401
            N                  + ++ P                 SG   +T+ GH ++V  
Sbjct: 289 NNK-----------------SDSKTPN----------------SGTCEVTYIGHKDFVLS 315
Query: 402 CCFSSQDQELYTGGNDRQILVW 423
              +  D+ + +G  DR +L W
Sbjct: 316 VATTQNDEYILSGSKDRGVLFW 337

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 1/113 (0%)
Query: 112 YPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQ 171
           +  D     T S D  VK+WD+   ++V  +    +          ++H+L+A G+ D  
Sbjct: 665 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 724
Query: 172 VRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG 224
           ++L D+       T+ GH + +    +S   E +L +   DG +R WD+R A 
Sbjct: 725 LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSAN 776

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 11/121 (9%)
Query: 308 HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDP 367
           H  AV     ++DG  + S G+D  ++++  E+G   L     ++    + +  A + D 
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL----DIKAHEDEVLCCAFSSDD 669
Query: 368 AVVFVPCMTAVKAFDIW---SGKTCLTFRGHYEYVNCCCFSSQDQELY--TGGNDRQILV 422
           +  ++   +A K   IW   +GK   T+  H E VNCC F+++   L   TG ND  + +
Sbjct: 670 S--YIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 727
Query: 423 W 423
           W
Sbjct: 728 W 728

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 1/113 (0%)
Query: 112 YPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQ 171
           +  D     T S D  VK+WD+   ++V  +    +          ++H+L+A G+ D  
Sbjct: 672 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 731
Query: 172 VRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG 224
           ++L D+       T+ GH + +    +S   E +L +   DG +R WD+R A 
Sbjct: 732 LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSAN 783

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 11/121 (9%)
Query: 308 HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDP 367
           H  AV     ++DG  + S G+D  ++++  E+G   L     ++    + +  A + D 
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL----DIKAHEDEVLCCAFSSDD 676
Query: 368 AVVFVPCMTAVKAFDIW---SGKTCLTFRGHYEYVNCCCFSSQDQELY--TGGNDRQILV 422
           +  ++   +A K   IW   +GK   T+  H E VNCC F+++   L   TG ND  + +
Sbjct: 677 S--YIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 734
Query: 423 W 423
           W
Sbjct: 735 W 735

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 137/339 (40%), Gaps = 38/339 (11%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASH 160
           GH  ++    + P D     + S D  VK+W+ N   +         V+  A SP     
Sbjct: 96  GHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP---DG 151
Query: 161 MLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDI 220
             IA+ ++D  V+L +  +G + QTL+GH   +  V +S   +  + +   D  ++ W+ 
Sbjct: 152 QTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWN- 208
Query: 221 RRAGCFRVLDQSQSQLGRRPPLLKRKVSISKS----LSAGQNSSVK--PRAPQ------K 268
           R     + L    S +        R V+ S       SA  + +VK   R  Q       
Sbjct: 209 RNGQLLQTLTGHSSSV--------RGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG 260
Query: 269 RSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQ--DRATAHYGAVTGLKVTEDGMYLLS 326
            S++ NGV     G+  A  S  + +     + Q     T H  +V G+  + DG  + S
Sbjct: 261 HSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIAS 320
Query: 327 AGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIW-- 384
           A  D  ++LW+    RN   + +T+   +S    +A + D     +   +  K   +W  
Sbjct: 321 ASDDKTVKLWN----RNGQ-HLQTLTGHSSSVWGVAFSPDGQT--IASASDDKTVKLWNR 373
Query: 385 SGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 423
           +G+   T  GH   V    FS   Q + +  +D+ + +W
Sbjct: 374 NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 412

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 126/313 (40%), Gaps = 65/313 (20%)
Query: 119 FVTGSYDHYVKVWDT---NCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLC 175
            V+GS D+ +KVW      C R ++     G V+ + M        +I +G+ D  +++ 
Sbjct: 132 IVSGSDDNTLKVWSAVTGKCLRTLVGH--TGGVWSSQMRD-----NIIISGSTDRTLKVW 184
Query: 176 DIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQ 235
           +  +G    TL GH     TV      E  +V+G  D  +R WDI    C  VL      
Sbjct: 185 NAETGECIHTLYGHTS---TVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVL------ 235
Query: 236 LGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLH 295
           +G    +   +    + +S   +  VK   P+  +                       LH
Sbjct: 236 MGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETC----------------------LH 273
Query: 296 PGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR--NTLVNFETVRL 353
                       H   V  L+   DG++++S   D+ IR+WDVE+G   +TL   +++  
Sbjct: 274 T--------LQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSL-- 321
Query: 354 QTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRG---HYEYVNCCCFSSQDQE 410
             +  ++L   +D  +V     + VK +DI +G+   T +G   H   V C  F+     
Sbjct: 322 --TSGMEL---KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NF 374
Query: 411 LYTGGNDRQILVW 423
           + T  +D  + +W
Sbjct: 375 VITSSDDGTVKLW 387

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/317 (21%), Positives = 112/317 (35%), Gaps = 61/317 (19%)
Query: 148 VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILV 207
           V R    P+ +   ++ + +ED  +++ D  +G   +TL GH D +  + +  S + +L 
Sbjct: 111 VTRVIFHPVFS---VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK-LLA 166
Query: 208 TGGCDGAIRFWDIRRAGCFRVL---DQSQSQLGRRP--------------PLLKRKVSIS 250
           +   D  I+ WD +   C R +   D + S +   P               + + +    
Sbjct: 167 SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC 226
Query: 251 KSLSAGQNSSVKPRAPQK------RSANGNGVRQSSVGRIPAKGSVRQRLH--------- 295
                G    V+   P +        +N   VR   V     K  +R+  H         
Sbjct: 227 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAP 286
Query: 296 PGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR--NTLVNFET--- 350
               SS   AT      +G    + G +LLS   D  I++WDV +G    TLV  +    
Sbjct: 287 ESSYSSISEATGSETKKSG----KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVR 342
Query: 351 -VRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIW--SGKTCL-TFRGHYEYVNCCCFSS 406
            V   +     L+   D            K   +W    K C+ T   H  +V    F  
Sbjct: 343 GVLFHSGGKFILSCADD------------KTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK 390
Query: 407 QDQELYTGGNDRQILVW 423
               + TG  D+ + VW
Sbjct: 391 TAPYVVTGSVDQTVKVW 407

>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/196 (19%), Positives = 89/196 (45%), Gaps = 20/196 (10%)
Query: 39  VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGG-GHIAKHRSVFVVDKQ 97
            S H  S+ +++ +  ++  L SG ++  + ++D+ + T+       +   +S+  VD+ 
Sbjct: 109 FSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDE- 167
Query: 98  HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVV--MNFKMPGKVYRTAMS- 154
                   + S  W      +F +    ++  +WD    + V  +++  P    +  +S 
Sbjct: 168 --------VISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSV 219
Query: 155 ----PLAASHMLIAAGTE-DVQVRLCDIASGAIS-QTLS-GHRDGIMTVEWSTSSEWILV 207
               P  ++ +  A G++ D  + + D+ +     QTL+ GH+ GI++++W    E +L+
Sbjct: 220 VEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLL 279
Query: 208 TGGCDGAIRFWDIRRA 223
           + G D  +  W+   A
Sbjct: 280 SSGRDNTVLLWNPESA 295

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 94/235 (40%), Gaps = 41/235 (17%)
Query: 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKV---YRTAMSPLAAS--HMLIAAGTED 169
           D+ + ++GS D  V +W          F +P K    +   +S LA S  +    + + D
Sbjct: 38  DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97
Query: 170 VQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVL 229
             +RL D+ +G   +   GH+  + +V +S  +  IL + G +  I+ W+I     F   
Sbjct: 98  KTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQIL-SAGAEREIKLWNILGECKFSSA 156
Query: 230 DQSQSQ----LGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIP 285
           ++          R  P++K              + V+P AP   S   +G          
Sbjct: 157 EKENHSDWVSCVRYSPIMKSA------------NKVQPFAPYFASVGWDG---------- 194
Query: 286 AKGSVRQRLHPGMLSSQDRAT--AHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDV 338
                  RL     + Q R T  AH   V  L ++ +G Y+ + G D ++ +WD+
Sbjct: 195 -------RLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/190 (20%), Positives = 84/190 (44%), Gaps = 15/190 (7%)
Query: 37  EIVSPHKGSINSLQ-VDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVD 95
            +   H  ++  L  V+    +Y+++G+ D+++ V+ + + +     G    +  VF   
Sbjct: 197 HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTP 256
Query: 96  KQHEH------GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVY 149
           +++ +      GH  ++ +   +     + V+GSYD+ + VWD    + +  + + G   
Sbjct: 257 EENPYFVGVLRGHXASVRTVSGHG---NIVVSGSYDNTLIVWDVAQXKCL--YILSGHTD 311
Query: 150 RTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTG 209
           R   +          + + D  +R+ D+ +G +  TL GH   +  +  S      LV+ 
Sbjct: 312 RIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDK---FLVSA 368
Query: 210 GCDGAIRFWD 219
             DG+IR WD
Sbjct: 369 AADGSIRGWD 378

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/267 (19%), Positives = 113/267 (42%), Gaps = 30/267 (11%)
Query: 163 IAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR 222
           +  G +D  +R+ D  +      LSGH  G+  ++++     ILV+G  D  +R WDI++
Sbjct: 135 VITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKK 192
Query: 223 AGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVG 282
             C  V +   S + R   +++ K +I   ++  +++++      K S+           
Sbjct: 193 GCCTHVFEGHNSTV-RCLDIVEYK-NIKYIVTGSRDNTLHVWKLPKESS----------- 239
Query: 283 RIPAKGSVRQRLHPGMLSSQDRATAHYGAVTG-----LKVTEDGMYLLSAGSDSRIRLWD 337
            +P  G   +  +P +  + +      G + G       V+  G  ++S   D+ + +WD
Sbjct: 240 -VPDHG--EEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWD 296
Query: 338 VESGRNT-LVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHY 396
           V   +   +++  T R+ ++    +   +    +     T ++ +D+ +G+   T +GH 
Sbjct: 297 VAQXKCLYILSGHTDRIYST----IYDHERKRCISASXDTTIRIWDLENGELXYTLQGHT 352
Query: 397 EYVNCCCFSSQDQELYTGGNDRQILVW 423
             V     S  D+ L +   D  I  W
Sbjct: 353 ALVGLLRLS--DKFLVSAAADGSIRGW 377

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/190 (20%), Positives = 84/190 (44%), Gaps = 15/190 (7%)
Query: 37  EIVSPHKGSINSLQ-VDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVD 95
            +   H  ++  L  V+    +Y+++G+ D+++ V+ + + +     G    +  VF   
Sbjct: 197 HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTP 256
Query: 96  KQHEH------GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVY 149
           +++ +      GH  ++ +   +     + V+GSYD+ + VWD    + +  + + G   
Sbjct: 257 EENPYFVGVLRGHMASVRTVSGHG---NIVVSGSYDNTLIVWDVAQMKCL--YILSGHTD 311
Query: 150 RTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTG 209
           R   +          + + D  +R+ D+ +G +  TL GH   +  +  S      LV+ 
Sbjct: 312 RIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDK---FLVSA 368
Query: 210 GCDGAIRFWD 219
             DG+IR WD
Sbjct: 369 AADGSIRGWD 378

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/265 (20%), Positives = 113/265 (42%), Gaps = 26/265 (9%)
Query: 163 IAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR 222
           +  G +D  +R+ D  +      LSGH  G+  ++++     ILV+G  D  +R WDI++
Sbjct: 135 VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKK 192
Query: 223 AGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKP-RAPQKRSANGNGVRQSS- 280
             C  V +   S + R   +++ K +I   ++  +++++   + P++ S   +G      
Sbjct: 193 GCCTHVFEGHNSTV-RCLDIVEYK-NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP 250
Query: 281 -VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVE 339
            V   P +      +  G ++S    + H            G  ++S   D+ + +WDV 
Sbjct: 251 LVFHTPEENPYFVGVLRGHMASVRTVSGH------------GNIVVSGSYDNTLIVWDVA 298
Query: 340 SGRNT-LVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEY 398
             +   +++  T R+ ++    +   +    +     T ++ +D+ +G+   T +GH   
Sbjct: 299 QMKCLYILSGHTDRIYST----IYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL 354
Query: 399 VNCCCFSSQDQELYTGGNDRQILVW 423
           V     S  D+ L +   D  I  W
Sbjct: 355 VGLLRLS--DKFLVSAAADGSIRGW 377

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 77/182 (42%), Gaps = 25/182 (13%)
Query: 42  HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG 101
           H   I S+ V  T+  Y+LSG+ D +V +++ +     E                Q   G
Sbjct: 96  HPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALE----------------QTFEG 138
Query: 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYR----TAMSPLA 157
           H++ +    + P D   F +G  D  VKVW  +  +   NF +     R        PL 
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVW--SLGQSTPNFTLTTGQERGVNYVDYYPLP 196
Query: 158 ASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRF 217
               +I A ++D+ +++ D  + +   TL GH   +    +  +   I+++G  DG ++ 
Sbjct: 197 DKPYMITA-SDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKI 254
Query: 218 WD 219
           W+
Sbjct: 255 WN 256

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 77/182 (42%), Gaps = 25/182 (13%)
Query: 42  HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG 101
           H   I S+ V  T+  Y+LSG+ D +V +++ +     E                Q   G
Sbjct: 96  HPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALE----------------QTFEG 138
Query: 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYR----TAMSPLA 157
           H++ +    + P D   F +G  D  VKVW  +  +   NF +     R        PL 
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVW--SLGQSTPNFTLTTGQERGVNYVDYYPLP 196
Query: 158 ASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRF 217
               +I A ++D+ +++ D  + +   TL GH   +    +  +   I+++G  DG ++ 
Sbjct: 197 DKPYMITA-SDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKI 254
Query: 218 WD 219
           W+
Sbjct: 255 WN 256

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 76/178 (42%), Gaps = 20/178 (11%)
Query: 42  HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG 101
           H G + SL +   + R  +SGA D+S  ++DV+     EG            + +Q   G
Sbjct: 183 HTGDVMSLSL-APDTRLFVSGACDASAKLWDVR-----EG------------MCRQTFTG 224
Query: 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHM 161
           H+  I++  ++P +   F TGS D   +++D    + +M +     +        + S  
Sbjct: 225 HESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 162 LIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
           L+ AG +D    + D      +  L+GH D  ++    T     + TG  D  ++ W+
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGH-DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 76/178 (42%), Gaps = 20/178 (11%)
Query: 42  HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG 101
           H G + SL +   + R  +SGA D+S  ++DV+     EG            + +Q   G
Sbjct: 183 HTGDVMSLSL-APDTRLFVSGACDASAKLWDVR-----EG------------MCRQTFTG 224
Query: 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHM 161
           H+  I++  ++P +   F TGS D   +++D    + +M +     +        + S  
Sbjct: 225 HESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 162 LIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
           L+ AG +D    + D      +  L+GH D  ++    T     + TG  D  ++ W+
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGH-DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 76/178 (42%), Gaps = 20/178 (11%)
Query: 42  HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG 101
           H G + SL +   + R  +SGA D+S  ++DV+     EG            + +Q   G
Sbjct: 183 HTGDVMSLSL-APDTRLFVSGACDASAKLWDVR-----EG------------MCRQTFTG 224
Query: 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHM 161
           H+  I++  ++P +   F TGS D   +++D    + +M +     +        + S  
Sbjct: 225 HESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 162 LIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
           L+ AG +D    + D      +  L+GH D  ++    T     + TG  D  ++ W+
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGH-DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 76/178 (42%), Gaps = 20/178 (11%)
Query: 42  HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG 101
           H G + SL +   + R  +SGA D+S  ++DV+     EG            + +Q   G
Sbjct: 183 HTGDVMSLSL-APDTRLFVSGACDASAKLWDVR-----EG------------MCRQTFTG 224
Query: 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHM 161
           H+  I++  ++P +   F TGS D   +++D    + +M +     +        + S  
Sbjct: 225 HESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 162 LIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
           L+ AG +D    + D      +  L+GH D  ++    T     + TG  D  ++ W+
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGH-DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 76/178 (42%), Gaps = 20/178 (11%)
Query: 42  HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG 101
           H G + SL +   + R  +SGA D+S  ++DV+     EG            + +Q   G
Sbjct: 194 HTGDVMSLSL-APDTRLFVSGACDASAKLWDVR-----EG------------MCRQTFTG 235
Query: 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHM 161
           H+  I++  ++P +   F TGS D   +++D    + +M +     +        + S  
Sbjct: 236 HESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 294
Query: 162 LIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
           L+ AG +D    + D      +  L+GH D  ++    T     + TG  D  ++ W+
Sbjct: 295 LLLAGYDDFNCNVWDALKADRAGVLAGH-DNRVSCLGVTDDGMAVATGSWDSFLKIWN 351

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 77/182 (42%), Gaps = 25/182 (13%)
Query: 42  HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG 101
           H   I S+ V  T+  Y+LSG+ D +V +++ +     E                Q   G
Sbjct: 96  HPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALE----------------QTFEG 138
Query: 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPG----KVYRTAMSPLA 157
           H++ +    + P D   F +G  D  VKVW  +  +   NF +       V      PL 
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVW--SLGQSTPNFTLTTGQERGVNYVDYYPLP 196
Query: 158 ASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRF 217
               +I A ++D+ +++ D  + +   TL GH   +    +  +   I+++G  DG ++ 
Sbjct: 197 DKPYMITA-SDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKI 254
Query: 218 WD 219
           W+
Sbjct: 255 WN 256

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 15/150 (10%)
Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP--------GKVYRTA 152
           GH   +    W P +  +  +GS D  V VW+     +V+  + P         +V   A
Sbjct: 79  GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 153 MSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG--HRDGIMTVEWSTSSEWILVTGG 210
             P  A ++L++AG ++V + + D+ +GA   TL    H D I +V+WS     ++ T  
Sbjct: 139 WHP-TAQNVLLSAGCDNV-ILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA-LICTSC 195
Query: 211 CDGAIRFWDIRRAGCFRVLDQSQSQLGRRP 240
            D  +R  + R+     V ++ +   G RP
Sbjct: 196 RDKRVRVIEPRKGTV--VAEKDRPHEGTRP 223

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 77/182 (42%), Gaps = 25/182 (13%)
Query: 42  HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG 101
           H   I S+ V  T+  Y+LSG+ D +V +++ +     E                Q   G
Sbjct: 96  HPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALE----------------QTFEG 138
Query: 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYR----TAMSPLA 157
           H++ +    + P D   F +G  D  VKVW  +  +   NF +     R        PL 
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVW--SLGQSTPNFTLTTGQERGVNYVDYYPLP 196
Query: 158 ASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRF 217
               +I A ++D+ +++ D  + +   TL GH   +    +  +   I+++G  DG ++ 
Sbjct: 197 DKPYMITA-SDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKI 254
Query: 218 WD 219
           W+
Sbjct: 255 WN 256

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 89/251 (35%), Gaps = 46/251 (18%)
Query: 180 GAISQTLSGHRDGIMTVEWST----SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQ 235
           G + +    H D I +V W T    +SE  +VTG  D  ++ W  R       LD   S 
Sbjct: 22  GILFKQEQAHDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRD----ERLDLQWSL 76
Query: 236 LGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLH 295
            G +  ++   V IS +L    +SS+          NG  ++    G + A         
Sbjct: 77  EGHQLGVV--SVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDA--------- 125
Query: 296 PGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT 355
                              L  + D  YL +     ++ ++ VESG+      +   L T
Sbjct: 126 -----------------WTLAFSPDSQYLATGTHVGKVNIFGVESGK------KEYSLDT 162
Query: 356 SKPIQLATTQDPAVVFVPCMT---AVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELY 412
                L+    P   ++        +  FDI +GK   T  GH   +    FS   Q L 
Sbjct: 163 RGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLV 222
Query: 413 TGGNDRQILVW 423
           T  +D  I ++
Sbjct: 223 TASDDGYIKIY 233

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 9/134 (6%)
Query: 295 HPGMLS--SQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR 352
           HPG  S  SQ         +   K+  DG  L+  G  S + +WD+ +    +       
Sbjct: 81  HPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRI----KAE 136
Query: 353 LQTSKP--IQLATTQDPAVVFVPCMTA-VKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQ 409
           L +S P    LA + D  V F  C    +  +D+ +      F+GH +  +C   S+   
Sbjct: 137 LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT 196
Query: 410 ELYTGGNDRQILVW 423
           +L+TGG D  +  W
Sbjct: 197 KLWTGGLDNTVRSW 210

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	446
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.98
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.98
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.98
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
2pm7_B	297	Protein transport protein SEC13, protein transport	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.97
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.97
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.97
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.97
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.97
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.97
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.96
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.96
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.96
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.96
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.96
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.96
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.95
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.95
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.95
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.95
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.95
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.95
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.94
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.94
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.94
3jro_A	753	Fusion protein of protein transport protein SEC13	99.94
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.94
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.93
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.93
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.93
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.91
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.9
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.88
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.88
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.87
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.87
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.86
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.86
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.85
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.85
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.85
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.84
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.84
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.84
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.83
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.83
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.83
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.82
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.81
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.81
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.8
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.8
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.8
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.79
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.78
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.77
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.77
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.77
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.77
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.76
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.75
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.73
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.71
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.68
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.67
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.67
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.66
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.64
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.62
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.62
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.57
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.56
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.56
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.54
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.53
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.53
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.5
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.49
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.49
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.49
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.48
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.46
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.46
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.45
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.4
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.39
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.37
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.37
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.36
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.35
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.35
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.34
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.33
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.33
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.32
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.32
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.31
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.29
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.27
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.25
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.22
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.22
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.21
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.2
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.19
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.19
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.14
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.12
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.11
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.1
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.08
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.05
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.01
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.01
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.01
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.96
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.95
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.91
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.89
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.86
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.81
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.77
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.77
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.76
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.71
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.7
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.69
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.69
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.63
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.57
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.54
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.52
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.51
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.48
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.47
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.42
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.37
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.35
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.35
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.34
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.29
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.27
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.26
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.26
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.23
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.17
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.07
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.06
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.04
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.03
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.95
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.95
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.88
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.88
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.83
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.82
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.77
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.7
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.69
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.64
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.53
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.46
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.42
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.41
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.38
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.36
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.29
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.23
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.12
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.11
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.97
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.93
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	96.92
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.92
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.91
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.82
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.81
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	96.72
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.66
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.65
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	96.58
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.49
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.39
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.23
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.21
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.08
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.06
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.05
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.04
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.0
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	95.96
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	95.75
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	95.65
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	95.29
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	95.24
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	94.99
3kya_A	496	Putative phosphatase; structural genomics, joint c	94.63
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	94.13
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	94.06
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	93.69
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	92.5
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	92.05
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	91.73
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	91.51
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	91.34
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	90.89
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	90.6
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	90.26
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	89.58
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	89.33
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	89.14
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	88.95
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	87.75
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	86.34
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	86.2
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	86.17
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	85.32
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	84.59
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	84.47
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	82.75
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	82.25
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	81.72

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3e-43  Score=332.88  Aligned_cols=288  Identities=20%  Similarity=0.309  Sum_probs=239.9

Q ss_pred             eCCCccceeEEEeecC---CCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecC
Q 013274           39 VSPHKGSINSLQVDLT---EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (446)
Q Consensus        39 ~~~H~~~v~~l~~s~~---~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~  115 (446)
                      ..+|.+.|++|+|+++   ++.+|+|||.|++|+|||+.+....               ......||...|.++.+.+ +
T Consensus        28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~---------------~~~~l~gh~~~v~~~~~~~-~   91 (321)
T 3ow8_A           28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD---------------LQWSLEGHQLGVVSVDISH-T   91 (321)
T ss_dssp             TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE---------------EEEEECCCSSCEEEEEECS-S
T ss_pred             cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee---------------eeeeeccCCCCEEEEEECC-C
Confidence            4689999999999864   3679999999999999998653210               0123468999999999887 6


Q ss_pred             CcEEEEEeCCCeEEEEECCCCeeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeE
Q 013274          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM  194 (446)
Q Consensus       116 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~  194 (446)
                      +.+++|++.|++|++||+.+++.+..+.. ...+..++++|.   ..+|++|+.|+.|++||+++++....+..|...|.
T Consensus        92 ~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spd---g~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~  168 (321)
T 3ow8_A           92 LPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPD---SQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFIL  168 (321)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTT---SSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEE
T ss_pred             CCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCC---CCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEE
Confidence            78999999999999999999998877764 334566777774   45899999999999999999999999999999999


Q ss_pred             EEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCC
Q 013274          195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGN  274 (446)
Q Consensus       195 sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (446)
                      +++|+|++++ |++|+.||.|++||+++++++..+                                             
T Consensus       169 ~~~~spdg~~-lasg~~dg~i~iwd~~~~~~~~~~---------------------------------------------  202 (321)
T 3ow8_A          169 SIAYSPDGKY-LASGAIDGIINIFDIATGKLLHTL---------------------------------------------  202 (321)
T ss_dssp             EEEECTTSSE-EEEEETTSCEEEEETTTTEEEEEE---------------------------------------------
T ss_pred             EEEECCCCCE-EEEEcCCCeEEEEECCCCcEEEEE---------------------------------------------
Confidence            9999999985 789999999999999876543322                                             


Q ss_pred             ceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEee
Q 013274          275 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQ  354 (446)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~  354 (446)
                                                     .+|..+|++++|+|++++|++|+.|++|++||+.++...    ..+..+
T Consensus       203 -------------------------------~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~----~~~~~h  247 (321)
T 3ow8_A          203 -------------------------------EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA----GTLSGH  247 (321)
T ss_dssp             -------------------------------CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEE----EEECCC
T ss_pred             -------------------------------cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCccee----EEEcCC
Confidence                                           256678999999999999999999999999999876432    122233


Q ss_pred             cCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274          355 TSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS  426 (446)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~  426 (446)
                      ......++++|++..+++++. ..+++||+.+++.+.++.+|.+.|++++|+||+++|+|++.|++|+||+.+
T Consensus       248 ~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          248 ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            445667899999988887654 689999999999999999999999999999999999999999999999864

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.4e-42  Score=331.07  Aligned_cols=287  Identities=16%  Similarity=0.340  Sum_probs=234.9

Q ss_pred             eeEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecC
Q 013274           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (446)
Q Consensus        36 ~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~  115 (446)
                      ...+.+|.+.|++++|+| ++++|+|||.||+|+|||+.++...                 .....|...|.++.++| +
T Consensus        48 ~~~l~gH~~~v~~~~~s~-d~~~l~s~s~Dg~v~iWd~~~~~~~-----------------~~~~~~~~~v~~~~~s~-~  108 (340)
T 1got_B           48 RRTLRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTTNKV-----------------HAIPLRSSWVMTCAYAP-S  108 (340)
T ss_dssp             EEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTCCEE-----------------EEEECSSSCEEEEEECT-T
T ss_pred             heeecCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCCcc-----------------eEeecCCccEEEEEECC-C
Confidence            345789999999999996 6889999999999999998765321                 11246888899998887 7


Q ss_pred             CcEEEEEeCCCeEEEEECCCCe----eeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCC
Q 013274          116 TGLFVTGSYDHYVKVWDTNCTR----VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHR  190 (446)
Q Consensus       116 ~~~l~s~s~D~~i~iWd~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~  190 (446)
                      +.+|++|+.|+.|++||+.+..    ....+. +.+.+.++.+.+..    .+++++.|+.|++||++++..+..+.+|.
T Consensus       109 ~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----~l~s~s~d~~i~~wd~~~~~~~~~~~~h~  184 (340)
T 1got_B          109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN----QIVTSSGDTTCALWDIETGQQTTTFTGHT  184 (340)
T ss_dssp             SSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT----EEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             CCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC----cEEEEECCCcEEEEECCCCcEEEEEcCCC
Confidence            8899999999999999998753    223332 34556677776532    48899999999999999999999999999


Q ss_pred             CCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccc
Q 013274          191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRS  270 (446)
Q Consensus       191 ~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (446)
                      +.|.+++|+|+++ +|++|+.|++|++||++++.+...+                                         
T Consensus       185 ~~v~~~~~~~~~~-~l~sg~~d~~v~~wd~~~~~~~~~~-----------------------------------------  222 (340)
T 1got_B          185 GDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTF-----------------------------------------  222 (340)
T ss_dssp             SCEEEEEECTTSS-EEEEEETTSCEEEEETTTCSEEEEE-----------------------------------------
T ss_pred             CceEEEEECCCCC-EEEEEeCCCcEEEEECCCCeeEEEE-----------------------------------------
Confidence            9999999999987 4799999999999999876543222                                         


Q ss_pred             cCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeE
Q 013274          271 ANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFET  350 (446)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~  350 (446)
                                                         .+|...|++++|+|+|.+|++|+.|++|++||+.+++... .+..
T Consensus       223 -----------------------------------~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~-~~~~  266 (340)
T 1got_B          223 -----------------------------------TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM-TYSH  266 (340)
T ss_dssp             -----------------------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-EECC
T ss_pred             -----------------------------------cCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEE-EEcc
Confidence                                               3567789999999999999999999999999998764321 1110


Q ss_pred             EEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeC
Q 013274          351 VRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC  424 (446)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~  424 (446)
                       .........++++|++.++++++. ..+++||+.+++....+.+|.+.|++++|+||+++|+|||.|++|+||+
T Consensus       267 -~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          267 -DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             -TTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             -CCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence             001123456889999998888765 5799999999999999999999999999999999999999999999996

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=6e-43  Score=342.16  Aligned_cols=286  Identities=18%  Similarity=0.304  Sum_probs=238.2

Q ss_pred             eEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC
Q 013274           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (446)
Q Consensus        37 ~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~  116 (446)
                      ..+.+|.+.|++++|+| ++.+|+|||.||+|+|||+.++...                 ....+|...|.++.|+| ++
T Consensus       102 ~~l~gh~~~V~~~~~~p-~~~~l~s~s~Dg~i~vwd~~~~~~~-----------------~~l~~h~~~V~~v~~~~-~~  162 (410)
T 1vyh_C          102 YALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFE-----------------RTLKGHTDSVQDISFDH-SG  162 (410)
T ss_dssp             CEEECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTCCCC-----------------EEECCCSSCEEEEEECT-TS
T ss_pred             EeecccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEE-----------------EEEeccCCcEEEEEEcC-CC
Confidence            34678999999999997 5789999999999999999876421                 12358999999999986 78


Q ss_pred             cEEEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEE
Q 013274          117 GLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT  195 (446)
Q Consensus       117 ~~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~s  195 (446)
                      .+|+||+.|++|++||+.+++++..+. +.+.+.++.++|.   ..+|++|+.|+.|++||++++.++..+.+|...|.+
T Consensus       163 ~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~---~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~  239 (410)
T 1vyh_C          163 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN---GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRM  239 (410)
T ss_dssp             SEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSS---SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred             CEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCC---CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEE
Confidence            899999999999999999988877665 3456888888874   358999999999999999999999999999999999


Q ss_pred             EEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCc
Q 013274          196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNG  275 (446)
Q Consensus       196 v~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (446)
                      +.|+|++.. |++|+.|++|++||++++.+...+.                                             
T Consensus       240 ~~~~~~g~~-l~s~s~D~~v~vwd~~~~~~~~~~~---------------------------------------------  273 (410)
T 1vyh_C          240 VRPNQDGTL-IASCSNDQTVRVWVVATKECKAELR---------------------------------------------  273 (410)
T ss_dssp             EEECTTSSE-EEEEETTSCEEEEETTTCCEEEEEC---------------------------------------------
T ss_pred             EEECCCCCE-EEEEcCCCeEEEEECCCCceeeEec---------------------------------------------
Confidence            999999874 7999999999999998776544332                                             


Q ss_pred             eeecccceeecCCccccccCCCcccccccccccccCeEEEEEccC--------------------CCEEEEeecCCcEEE
Q 013274          276 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED--------------------GMYLLSAGSDSRIRL  335 (446)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~d--------------------g~~l~sgs~D~~i~l  335 (446)
                                                     +|...|.+++|+|+                    |.+|++|+.|++|++
T Consensus       274 -------------------------------~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~i  322 (410)
T 1vyh_C          274 -------------------------------EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM  322 (410)
T ss_dssp             -------------------------------CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEE
T ss_pred             -------------------------------CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEE
Confidence                                           23344555555553                    789999999999999


Q ss_pred             EecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEe
Q 013274          336 WDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTG  414 (446)
Q Consensus       336 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtg  414 (446)
                      ||+.++...    ..+..+......+++++++..+++++. ..+++||+.+++.+.++.+|...|++++|+|++++|+||
T Consensus       323 wd~~~~~~~----~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg  398 (410)
T 1vyh_C          323 WDVSTGMCL----MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTG  398 (410)
T ss_dssp             EETTTTEEE----EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEE
T ss_pred             EECCCCceE----EEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEE
Confidence            999987532    222223444567889999888887755 579999999999999999999999999999999999999


Q ss_pred             eCCCcEEEeCC
Q 013274          415 GNDRQILVWCP  425 (446)
Q Consensus       415 s~D~~v~vW~~  425 (446)
                      |.|++|+||+.
T Consensus       399 s~D~~i~vW~~  409 (410)
T 1vyh_C          399 SVDQTVKVWEC  409 (410)
T ss_dssp             ETTSEEEEEC-
T ss_pred             eCCCcEEEEeC
Confidence            99999999986

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=3.7e-42  Score=325.08  Aligned_cols=293  Identities=19%  Similarity=0.319  Sum_probs=238.3

Q ss_pred             eEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC
Q 013274           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (446)
Q Consensus        37 ~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~  116 (446)
                      ..+.+|++.|++|+|+|.++++|+|||.|++|++||+......       ...+     .....+|...|.++.++| ++
T Consensus        11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~-------~~~~-----~~~~~~h~~~v~~~~~s~-dg   77 (319)
T 3frx_A           11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK-------FGVP-----VRSFKGHSHIVQDCTLTA-DG   77 (319)
T ss_dssp             EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE-------EEEE-----EEEEECCSSCEEEEEECT-TS
T ss_pred             EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc-------cccc-----ceEEeCCcccEEEEEECC-CC
Confidence            3478999999999999866789999999999999998643210       0001     123468999999998886 78


Q ss_pred             cEEEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEE
Q 013274          117 GLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT  195 (446)
Q Consensus       117 ~~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~s  195 (446)
                      .+|+||+.|++|++||+.+++.+..+. +.+.+.++++.+.   ..+|++|+.|+.|++||++ +..+..+.+|...|.+
T Consensus        78 ~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~  153 (319)
T 3frx_A           78 AYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK---ASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQ  153 (319)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTT---SCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEE
T ss_pred             CEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCC---CCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEE
Confidence            999999999999999999999887776 4566888888874   4589999999999999996 4567788999999999


Q ss_pred             EEEecCCC-----eEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccc
Q 013274          196 VEWSTSSE-----WILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRS  270 (446)
Q Consensus       196 v~~s~~~~-----~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (446)
                      +.|+|..+     ..+++++.|++|++||+++..+...                                          
T Consensus       154 ~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~------------------------------------------  191 (319)
T 3frx_A          154 VRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD------------------------------------------  191 (319)
T ss_dssp             EEECCC------CCEEEEEETTSCEEEEETTTTEEEEE------------------------------------------
T ss_pred             EEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhee------------------------------------------
Confidence            99998543     2579999999999999976432211                                          


Q ss_pred             cCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeE
Q 013274          271 ANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFET  350 (446)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~  350 (446)
                                                        ..+|..+|.+++|+|+|++|++|+.|++|++||+.+++...    .
T Consensus       192 ----------------------------------~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~----~  233 (319)
T 3frx_A          192 ----------------------------------FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMY----T  233 (319)
T ss_dssp             ----------------------------------ECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEE----E
T ss_pred             ----------------------------------ecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE----E
Confidence                                              23678889999999999999999999999999999865321    1


Q ss_pred             EEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEec--------ccccceEEEEEcCCCCEEEEeeCCCcEEE
Q 013274          351 VRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFR--------GHYEYVNCCCFSSQDQELYTGGNDRQILV  422 (446)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~--------gH~~~v~~~~fSpd~~~lvtgs~D~~v~v  422 (446)
                      +. .......++++|++..++.+....+++|++..+.....+.        .|...+.+++|||||++|++|+.|++|+|
T Consensus       234 ~~-~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~v  312 (319)
T 3frx_A          234 LS-AQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRV  312 (319)
T ss_dssp             EE-CCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             ec-CCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEE
Confidence            11 1345667899999999999888899999998877666554        45778999999999999999999999999


Q ss_pred             eCCCC
Q 013274          423 WCPSR  427 (446)
Q Consensus       423 W~~~~  427 (446)
                      |++.+
T Consensus       313 Wd~~t  317 (319)
T 3frx_A          313 WQVMT  317 (319)
T ss_dssp             EEEEE
T ss_pred             EEEee
Confidence            98754

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=6.7e-42  Score=328.14  Aligned_cols=289  Identities=18%  Similarity=0.311  Sum_probs=233.4

Q ss_pred             eeEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecC
Q 013274           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (446)
Q Consensus        36 ~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~  115 (446)
                      ...+.+|.+.|++|+|+| ++++|+|||.||+|+|||..++...                 .....|...|.++.++| +
T Consensus        57 ~~~l~gH~~~V~~~~~s~-d~~~l~s~s~Dg~v~vWd~~~~~~~-----------------~~~~~~~~~v~~~~~sp-~  117 (354)
T 2pbi_B           57 RRTLKGHGNKVLCMDWCK-DKRRIVSSSQDGKVIVWDSFTTNKE-----------------HAVTMPCTWVMACAYAP-S  117 (354)
T ss_dssp             EEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEE-----------------EEEECSSSCCCEEEECT-T
T ss_pred             EEEecCCCCeEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCcc-----------------eEEecCCCCEEEEEECC-C
Confidence            345789999999999997 6789999999999999998754321                 11235677888888887 7


Q ss_pred             CcEEEEEeCCCeEEEEECCCCe------eeEEE-ecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeC
Q 013274          116 TGLFVTGSYDHYVKVWDTNCTR------VVMNF-KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG  188 (446)
Q Consensus       116 ~~~l~s~s~D~~i~iWd~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~  188 (446)
                      +.++++|+.|+++++|++....      ....+ .+.+.+..+.+++.   ...|++++.|+.|++||+++++++..+.+
T Consensus       118 g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~t~s~D~~v~lwd~~~~~~~~~~~~  194 (354)
T 2pbi_B          118 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNS---DMQILTASGDGTCALWDVESGQLLQSFHG  194 (354)
T ss_dssp             SSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSS---SSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCC---CCEEEEEeCCCcEEEEeCCCCeEEEEEcC
Confidence            8999999999999999986431      12222 24456777788764   34789999999999999999999999999


Q ss_pred             CCCCeEEEEEecCC-CeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCcc
Q 013274          189 HRDGIMTVEWSTSS-EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQ  267 (446)
Q Consensus       189 h~~~v~sv~~s~~~-~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (446)
                      |...|.++.|+|+. ...|++|+.||+|++||++++.++..+                                      
T Consensus       195 h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~--------------------------------------  236 (354)
T 2pbi_B          195 HGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF--------------------------------------  236 (354)
T ss_dssp             CSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEE--------------------------------------
T ss_pred             CCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEe--------------------------------------
Confidence            99999999998852 235899999999999999876543322                                      


Q ss_pred             ccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeee
Q 013274          268 KRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVN  347 (446)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~  347 (446)
                                                            .+|...|++++|+|+|.+|++|+.|++|++||+.+++... .
T Consensus       237 --------------------------------------~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~-~  277 (354)
T 2pbi_B          237 --------------------------------------ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVA-I  277 (354)
T ss_dssp             --------------------------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-E
T ss_pred             --------------------------------------cCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE-E
Confidence                                                  2567789999999999999999999999999998764321 1


Q ss_pred             eeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeC
Q 013274          348 FETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC  424 (446)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~  424 (446)
                      +.. .........+.+++++.++++++. ..+++||+.+++.+..+.+|.+.|++++||||+++|+|||.|++|+||+
T Consensus       278 ~~~-~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          278 YSK-ESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             ECC-TTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EcC-CCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            110 000113456789999998888765 5899999999999999999999999999999999999999999999996

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.4e-42  Score=334.56  Aligned_cols=295  Identities=19%  Similarity=0.342  Sum_probs=232.9

Q ss_pred             eEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC
Q 013274           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (446)
Q Consensus        37 ~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~  116 (446)
                      ..+.+|++.|++|+|+| ++++|+|||.|++|+|||+.++...                 ....+|...|.++.++| ++
T Consensus        60 ~~l~gH~~~V~~~~~sp-~~~~l~s~s~D~~v~iWd~~~~~~~-----------------~~~~~h~~~v~~~~~s~-~g  120 (380)
T 3iz6_a           60 RTLQGHSGKVYSLDWTP-EKNWIVSASQDGRLIVWNALTSQKT-----------------HAIKLHCPWVMECAFAP-NG  120 (380)
T ss_dssp             EEECCCSSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEE-----------------EEEECCCTTCCCCEECT-TS
T ss_pred             ecccccccEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCccc-----------------eEEecCCCCEEEEEECC-CC
Confidence            45789999999999997 6789999999999999998765321                 12247888899988887 88


Q ss_pred             cEEEEEeCCCeEEEEECCCCee-------eEEE-ecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeee--
Q 013274          117 GLFVTGSYDHYVKVWDTNCTRV-------VMNF-KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL--  186 (446)
Q Consensus       117 ~~l~s~s~D~~i~iWd~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l--  186 (446)
                      ++|++|+.|++|++||+.+...       ...+ .+.+.+..+.+.+..  ...|++|+.|+.|++||++++..+..+  
T Consensus       121 ~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~--~~~l~s~s~D~~i~~wd~~~~~~~~~~~~  198 (380)
T 3iz6_a          121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQ--ETRLITGSGDQTCVLWDVTTGQRISIFGS  198 (380)
T ss_dssp             SEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSS--SSCEEEECTTSCEEEECTTTCCEEEEECC
T ss_pred             CEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCC--CCEEEEECCCCcEEEEEcCCCcEEEEeec
Confidence            9999999999999999875321       1111 123345555666542  346899999999999999999887766  


Q ss_pred             ---eCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCc-eeEEeecccccccCCCcccccceeeccccccCCCCCcC
Q 013274          187 ---SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG-CFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVK  262 (446)
Q Consensus       187 ---~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (446)
                         .+|...|.++.|++.+..+|+||+.|++|++||++... ++.                                   
T Consensus       199 ~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~-----------------------------------  243 (380)
T 3iz6_a          199 EFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVR-----------------------------------  243 (380)
T ss_dssp             CSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCE-----------------------------------
T ss_pred             ccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceE-----------------------------------
Confidence               68999999999987444568999999999999987421 110                                   


Q ss_pred             CCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCc
Q 013274          263 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR  342 (446)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~  342 (446)
                                                               ...+|.+.|++|+|+|+|.+|+||+.|++|++||+.+++
T Consensus       244 -----------------------------------------~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~  282 (380)
T 3iz6_a          244 -----------------------------------------TYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH  282 (380)
T ss_dssp             -----------------------------------------EECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTE
T ss_pred             -----------------------------------------EECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCc
Confidence                                                     124688899999999999999999999999999999875


Q ss_pred             eeeeeeeEEEe----ecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEe----cccccceEEEEEcCCCCEEEE
Q 013274          343 NTLVNFETVRL----QTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTF----RGHYEYVNCCCFSSQDQELYT  413 (446)
Q Consensus       343 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l----~gH~~~v~~~~fSpd~~~lvt  413 (446)
                      .... +.....    .......+++++++..+++++. ..+++||+.+++....+    .+|.+.|++++||||+++|+|
T Consensus       283 ~~~~-~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s  361 (380)
T 3iz6_a          283 QLQV-YNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCT  361 (380)
T ss_dssp             EEEE-ECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEE
T ss_pred             EEEE-ecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEE
Confidence            4221 111000    0112457899999999988765 58999999998888777    789999999999999999999


Q ss_pred             eeCCCcEEEeCCCCCC
Q 013274          414 GGNDRQILVWCPSRHI  429 (446)
Q Consensus       414 gs~D~~v~vW~~~~~~  429 (446)
                      ||.|++|+||++..+.
T Consensus       362 gs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          362 GSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             ECTTSCEEEEECCSSS
T ss_pred             eeCCCCEEEEecCCCc
Confidence            9999999999988764

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=8e-41  Score=325.19  Aligned_cols=358  Identities=36%  Similarity=0.701  Sum_probs=269.9

Q ss_pred             ccccccCCchhhhhhhhcccceeccccceeEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCcccc
Q 013274            8 REAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAK   87 (446)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~   87 (446)
                      |..+.-.+.-+...-...++..+.......++.+|.+.|++|+|+|.++++|++|+.||+|++||+.++.....    ..
T Consensus         8 r~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~----~~   83 (408)
T 4a11_B            8 RQTGLEDPLRLRRAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSY----YT   83 (408)
T ss_dssp             HHHTSSCHHHHHHHHHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSC----EE
T ss_pred             cccCccCccceeeccCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccce----Ee
Confidence            34444344444444344455566666667788899999999999974688999999999999999987653211    01


Q ss_pred             ccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEee
Q 013274           88 HRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGT  167 (446)
Q Consensus        88 ~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs  167 (446)
                      .............+|...|.++.|+|.++.+|++++.|++|++||+.+++.+..+.....+..+.+.+...+..++++++
T Consensus        84 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (408)
T 4a11_B           84 CKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGT  163 (408)
T ss_dssp             ECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEE
T ss_pred             ccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEc
Confidence            11111122233457999999999998778899999999999999999999998888888888999998877777999999


Q ss_pred             CCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCc-eeEEeecccccccCCCcccccc
Q 013274          168 EDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG-CFRVLDQSQSQLGRRPPLLKRK  246 (446)
Q Consensus       168 ~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~  246 (446)
                      .|+.|++||++++.....+.+|.+.|.+++|+|+++++|++++.||.|++||+++.. ++..+.......          
T Consensus       164 ~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~----------  233 (408)
T 4a11_B          164 RGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKK----------  233 (408)
T ss_dssp             SSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCS----------
T ss_pred             CCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccccc----------
Confidence            999999999999999999999999999999999998778999999999999998754 222211100000          


Q ss_pred             eeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEE
Q 013274          247 VSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLS  326 (446)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s  326 (446)
                                                                         .........+|.+.|.+++|+|+|.+|++
T Consensus       234 ---------------------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  262 (408)
T 4a11_B          234 ---------------------------------------------------SQAVESANTAHNGKVNGLCFTSDGLHLLT  262 (408)
T ss_dssp             ---------------------------------------------------CCCTTTSSCSCSSCEEEEEECTTSSEEEE
T ss_pred             ---------------------------------------------------ceeeccccccccCceeEEEEcCCCCEEEE
Confidence                                                               00000112467889999999999999999


Q ss_pred             eecCCcEEEEecCcCceeeeeeeEEEee--cCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEE
Q 013274          327 AGSDSRIRLWDVESGRNTLVNFETVRLQ--TSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCF  404 (446)
Q Consensus       327 gs~D~~i~lWd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~f  404 (446)
                      ++.|+.|++||+.+++............  ..............+++......+++||+.+++.+..+.+|.+.|++++|
T Consensus       263 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~  342 (408)
T 4a11_B          263 VGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVF  342 (408)
T ss_dssp             EETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred             ecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEE
Confidence            9999999999999875422111110000  11112223334455666667789999999999999999999999999999


Q ss_pred             cCCCCEEEEeeCCCcEEEeCCCCCCC
Q 013274          405 SSQDQELYTGGNDRQILVWCPSRHIS  430 (446)
Q Consensus       405 Spd~~~lvtgs~D~~v~vW~~~~~~~  430 (446)
                      +||+++|+||+.|+.|++|+++....
T Consensus       343 s~~~~~l~s~~~dg~i~iw~~~~~~~  368 (408)
T 4a11_B          343 QSNFQELYSGSRDCNILAWVPSLYEP  368 (408)
T ss_dssp             ETTTTEEEEEETTSCEEEEEECC---
T ss_pred             cCCCCEEEEECCCCeEEEEeCCCCCc
Confidence            99999999999999999999986653

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=7.9e-41  Score=319.21  Aligned_cols=296  Identities=19%  Similarity=0.302  Sum_probs=231.8

Q ss_pred             eEeCCCccceeEEEe-----ecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEE
Q 013274           37 EIVSPHKGSINSLQV-----DLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIW  111 (446)
Q Consensus        37 ~~~~~H~~~v~~l~~-----s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~  111 (446)
                      .++.+|++.|++|+|     ++.++.+|+|||.|++|+|||+.+.....   ..  ..+     .....+|...|.++.+
T Consensus        15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~---~~--~~~-----~~~l~~h~~~V~~~~~   84 (343)
T 2xzm_R           15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG---YF--GIP-----HKALTGHNHFVSDLAL   84 (343)
T ss_dssp             EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS---BS--EEE-----EEEECCCSSCEEEEEE
T ss_pred             eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc---cc--ccc-----cchhccCCCceEEEEE
Confidence            457899999999999     65578899999999999999987543210   00  000     1234689999999999


Q ss_pred             eecCCcEEEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceee--eeeC
Q 013274          112 YPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ--TLSG  188 (446)
Q Consensus       112 ~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~--~l~~  188 (446)
                      +| ++.+++||+.|++|++||+.+++.+..+. +.+.+.+++++|..   .+|++++.|+.|++||+.......  ...+
T Consensus        85 ~~-~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~---~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~  160 (343)
T 2xzm_R           85 SQ-ENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDN---RQILSAGAEREIKLWNILGECKFSSAEKEN  160 (343)
T ss_dssp             CS-STTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSST---TEEEEEETTSCEEEEESSSCEEEECCTTTS
T ss_pred             CC-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCC---CEEEEEcCCCEEEEEeccCCceeeeecccC
Confidence            87 78899999999999999999998887776 45678889998853   478999999999999998443222  1237


Q ss_pred             CCCCeEEEEEecCCC---------eEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCC
Q 013274          189 HRDGIMTVEWSTSSE---------WILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNS  259 (446)
Q Consensus       189 h~~~v~sv~~s~~~~---------~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (446)
                      |...|.+++|+|++.         .+|++++.|++|++||.+. ....                                
T Consensus       161 ~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~--------------------------------  207 (343)
T 2xzm_R          161 HSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QIRY--------------------------------  207 (343)
T ss_dssp             CSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-EEEE--------------------------------
T ss_pred             CCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-ceeE--------------------------------
Confidence            999999999999862         2579999999999999432 1111                                


Q ss_pred             CcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecC
Q 013274          260 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVE  339 (446)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~  339 (446)
                                                                  ...+|.+.|.+++|+|+|++|++|+.|++|++||+.
T Consensus       208 --------------------------------------------~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~  243 (343)
T 2xzm_R          208 --------------------------------------------TFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDIL  243 (343)
T ss_dssp             --------------------------------------------EEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESS
T ss_pred             --------------------------------------------EEcCccccceEEEECCCCCEEEEEcCCCeEEEEECC
Confidence                                                        123577889999999999999999999999999995


Q ss_pred             cCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEE--Eec-----------ccccceEEEEEcC
Q 013274          340 SGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCL--TFR-----------GHYEYVNCCCFSS  406 (446)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~l~-----------gH~~~v~~~~fSp  406 (446)
                      +.......+    ........++++|++.+++++....+++|++.+++...  .+.           +|...|++++|+|
T Consensus       244 ~~~~~~~~~----~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  319 (343)
T 2xzm_R          244 NLTYPQREF----DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNA  319 (343)
T ss_dssp             CCSSCSEEE----ECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECS
T ss_pred             CCcccceee----cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECC
Confidence            432211111    11234567889999988888888899999998776543  444           7999999999999


Q ss_pred             CCCEEEEeeCCCcEEEeCCCC
Q 013274          407 QDQELYTGGNDRQILVWCPSR  427 (446)
Q Consensus       407 d~~~lvtgs~D~~v~vW~~~~  427 (446)
                      ++++|++|+.|++|++|+.++
T Consensus       320 ~g~~l~sg~~Dg~v~~w~~~~  340 (343)
T 2xzm_R          320 LGKKLFAGFTDGVIRTFSFET  340 (343)
T ss_dssp             SSCCEEEEETTSEEEEEEEEE
T ss_pred             CCCeEEEecCCceEEEEEEEc
Confidence            999999999999999998764

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.5e-40  Score=310.34  Aligned_cols=290  Identities=17%  Similarity=0.277  Sum_probs=233.3

Q ss_pred             ceeEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeec
Q 013274           35 YKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV  114 (446)
Q Consensus        35 ~~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~  114 (446)
                      .+..+.+|++.|++|+|+| ++++|+||+.||+|+|||++++...                 ....+|...|.++.++| 
T Consensus         5 ~~~~~~~h~~~V~~~~fsp-~~~~l~s~~~dg~v~lWd~~~~~~~-----------------~~~~~~~~~v~~~~~~~-   65 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDFHP-TEPWVLTTLYSGRVELWNYETQVEV-----------------RSIQVTETPVRAGKFIA-   65 (304)
T ss_dssp             CEEEEEEECSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEE-----------------EEEECCSSCEEEEEEEG-
T ss_pred             eEEeecCCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCCcee-----------------EEeeccCCcEEEEEEeC-
Confidence            3566889999999999997 6789999999999999999765321                 12247888899998887 


Q ss_pred             CCcEEEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC-ceeeeeeCCCCC
Q 013274          115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AISQTLSGHRDG  192 (446)
Q Consensus       115 ~~~~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~-~~~~~l~~h~~~  192 (446)
                      ++++|++|+.|++|++||+.+++.+..+. +.+.+.+++++|..   .+|++|+.|+.|++||++++ .....+.+|...
T Consensus        66 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~  142 (304)
T 2ynn_A           66 RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK---PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF  142 (304)
T ss_dssp             GGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS---SEEEEEETTSCEEEEEGGGTTEEEEEECCCCSC
T ss_pred             CCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCC---CEEEEECCCCeEEEEECCCCcchhhhhcccCCc
Confidence            78899999999999999999999887776 45668889998753   58999999999999999987 456778999999


Q ss_pred             eEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccC
Q 013274          193 IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSAN  272 (446)
Q Consensus       193 v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (446)
                      |.+++|+|.+...|+||+.|++|++||+++......+                                           
T Consensus       143 v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~-------------------------------------------  179 (304)
T 2ynn_A          143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL-------------------------------------------  179 (304)
T ss_dssp             EEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEE-------------------------------------------
T ss_pred             EEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcccee-------------------------------------------
Confidence            9999999955446899999999999998754321111                                           


Q ss_pred             CCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEcc--CCCEEEEeecCCcEEEEecCcCceeeeeeeE
Q 013274          273 GNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE--DGMYLLSAGSDSRIRLWDVESGRNTLVNFET  350 (446)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~--dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~  350 (446)
                                                      ..+|...+..+.|+|  ++.+|++|+.|++|++||+.+++..    ..
T Consensus       180 --------------------------------~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~----~~  223 (304)
T 2ynn_A          180 --------------------------------TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV----AT  223 (304)
T ss_dssp             --------------------------------ECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEE----EE
T ss_pred             --------------------------------ccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccc----ee
Confidence                                            013445688888876  7889999999999999999987532    22


Q ss_pred             EEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCC--EEEEeeCCCcEEEeCCC
Q 013274          351 VRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQ--ELYTGGNDRQILVWCPS  426 (446)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~--~lvtgs~D~~v~vW~~~  426 (446)
                      +..+......++++|++..+++++. ..+++||+.+++...++..|...+++++|+|+++  +|++|+.|+ +.+|++.
T Consensus       224 ~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~  301 (304)
T 2ynn_A          224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLG  301 (304)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC
T ss_pred             eCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEec
Confidence            3334455567889999888887754 6899999999999999999999999999999885  477776555 6666554

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=6.2e-41  Score=319.78  Aligned_cols=296  Identities=13%  Similarity=0.132  Sum_probs=223.8

Q ss_pred             CCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCC-CCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274           40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEG-GGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (446)
Q Consensus        40 ~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~  118 (446)
                      ..|...|++++|+| +|++|+++| |+++++||......... ........       .....|...|.++.|+| + +.
T Consensus        27 ~~~~~~v~~~~fs~-dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~-------~~~~~~~~~v~~~~~s~-d-~~   95 (344)
T 4gqb_B           27 ACMERQLEAARYRS-DGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFC-------SAGVQTEAGVADLTWVG-E-RG   95 (344)
T ss_dssp             SSCCSEEEEEEECT-TSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGC-------SEEEEESSCEEEEEEET-T-TE
T ss_pred             ccccCCEEEEEECC-CCCEEEEEe-CCceEEeeceeeeeccccccCCccee-------eeeeccCCCEEEEEEeC-C-Ce
Confidence            35778899999997 688888877 88899998532110000 00000000       01124667899999987 4 47


Q ss_pred             EEEEeCCCeEEEEECCCCeeeEEEe-----cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCe
Q 013274          119 FVTGSYDHYVKVWDTNCTRVVMNFK-----MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI  193 (446)
Q Consensus       119 l~s~s~D~~i~iWd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v  193 (446)
                      |++|+.|++|+|||+++++.+....     +.+.+.+++++++   ..+|++|+.|+.|++||+++++++..+.+|.+.|
T Consensus        96 l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spd---g~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V  172 (344)
T 4gqb_B           96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSS---GTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQV  172 (344)
T ss_dssp             EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTT---SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCC---CCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCce
Confidence            8999999999999999887654332     4566889999875   4589999999999999999999999999999999


Q ss_pred             EEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCC
Q 013274          194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANG  273 (446)
Q Consensus       194 ~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (446)
                      .+++|+|++..+|+|++.|++|++||++++++...+.                                           
T Consensus       173 ~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-------------------------------------------  209 (344)
T 4gqb_B          173 TCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIG-------------------------------------------  209 (344)
T ss_dssp             EEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-------------------------------------------
T ss_pred             EEEEecCCCCCceeeeccccccccccccccceeeeee-------------------------------------------
Confidence            9999999987778999999999999998765433221                                           


Q ss_pred             CceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccC-CCEEEEeecCCcEEEEecCcCceeeeeeeEEE
Q 013274          274 NGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED-GMYLLSAGSDSRIRLWDVESGRNTLVNFETVR  352 (446)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~d-g~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~  352 (446)
                                                     ...|...+.+++|+|+ +.+|++|+.|++|++||+.+++..    ..+.
T Consensus       210 -------------------------------~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~----~~~~  254 (344)
T 4gqb_B          210 -------------------------------CSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCV----LSSA  254 (344)
T ss_dssp             -----------------------------------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CC----EEEE
T ss_pred             -------------------------------cceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEE----EEEc
Confidence                                           0123445899999985 578999999999999999987542    2233


Q ss_pred             eecCCCeEEEEcCCCc-EEEEeC-CCceEEEEeecCceEEEecccccceEEEEEcCCCC-EEEEeeCCCcEEEeCCCCC
Q 013274          353 LQTSKPIQLATTQDPA-VVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQ-ELYTGGNDRQILVWCPSRH  428 (446)
Q Consensus       353 ~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~-~lvtgs~D~~v~vW~~~~~  428 (446)
                      .+......++++|++. ++++++ +..+++||+.++++ ..+.+|.+.|++|+|||+++ +|+|||.|++|++|+++..
T Consensus       255 ~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~-~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          255 VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL-FRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE-EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred             CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE-EEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence            3445566788999874 566554 56899999988775 46789999999999999986 5779999999999998754

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=5.4e-40  Score=311.71  Aligned_cols=296  Identities=19%  Similarity=0.307  Sum_probs=233.6

Q ss_pred             eeEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecC
Q 013274           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (446)
Q Consensus        36 ~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~  115 (446)
                      +..++||++.|++|+|+|+++++|+|||.|++|+|||+.+.....       .     .......+|...|.++.|+| +
T Consensus        31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~-------~-----~~~~~l~~h~~~V~~~~~s~-d   97 (340)
T 4aow_A           31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNY-------G-----IPQRALRGHSHFVSDVVISS-D   97 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCS-------E-----EEEEEECCCSSCEEEEEECT-T
T ss_pred             EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc-------c-----eeeEEEeCCCCCEEEEEECC-C
Confidence            445789999999999998778899999999999999997654211       0     01123468999999999987 8


Q ss_pred             CcEEEEEeCCCeEEEEECCCCeeeEEEecCC-ceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCce-eeeeeCCCCCe
Q 013274          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPG-KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI-SQTLSGHRDGI  193 (446)
Q Consensus       116 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~-~~~l~~h~~~v  193 (446)
                      +.+|++++.|+.|++|+.............. ......+.+   ...+|++++.|+.+++||+..... ...+.+|...+
T Consensus        98 g~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v  174 (340)
T 4aow_A           98 GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS---DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWV  174 (340)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT---TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCE
T ss_pred             CCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEee---cCccceeecCCCeEEEEEeCCCceEEEEeccccCcc
Confidence            8999999999999999999887766555433 344444444   335789999999999999987654 45567899999


Q ss_pred             EEEEEecCCC-eEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccC
Q 013274          194 MTVEWSTSSE-WILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSAN  272 (446)
Q Consensus       194 ~sv~~s~~~~-~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (446)
                      ..++|++++. .++++++.|++|++||++++.+...                                            
T Consensus       175 ~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~--------------------------------------------  210 (340)
T 4aow_A          175 SCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN--------------------------------------------  210 (340)
T ss_dssp             EEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEE--------------------------------------------
T ss_pred             cceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeE--------------------------------------------
Confidence            9999998754 3578999999999999987643322                                            


Q ss_pred             CCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEE
Q 013274          273 GNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR  352 (446)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~  352 (446)
                                                      ..+|.++|++|+|+|+|++|++|+.|++|++||+.+.+...    ...
T Consensus       211 --------------------------------~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~----~~~  254 (340)
T 4aow_A          211 --------------------------------HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLY----TLD  254 (340)
T ss_dssp             --------------------------------ECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEE----EEE
T ss_pred             --------------------------------ecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceee----eec
Confidence                                            13577889999999999999999999999999999865321    111


Q ss_pred             eecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEE---------ecccccceEEEEEcCCCCEEEEeeCCCcEEEe
Q 013274          353 LQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLT---------FRGHYEYVNCCCFSSQDQELYTGGNDRQILVW  423 (446)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~---------l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW  423 (446)
                       .......+.+.|++.+++.+....+++||+.++.....         +.+|...|++++|+||+++|+||+.|++|+||
T Consensus       255 -~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW  333 (340)
T 4aow_A          255 -GGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVW  333 (340)
T ss_dssp             -CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             -CCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence             12344567788888888888888999999987765544         35799999999999999999999999999999


Q ss_pred             CCCCC
Q 013274          424 CPSRH  428 (446)
Q Consensus       424 ~~~~~  428 (446)
                      ++.++
T Consensus       334 ~~~tG  338 (340)
T 4aow_A          334 QVTIG  338 (340)
T ss_dssp             EEEC-
T ss_pred             eCCCc
Confidence            98764

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.3e-39  Score=306.35  Aligned_cols=290  Identities=22%  Similarity=0.408  Sum_probs=234.8

Q ss_pred             eEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC
Q 013274           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (446)
Q Consensus        37 ~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~  116 (446)
                      ..+.+|.+.|++++|+| ++++|++|+.||+|++||+.++...                 ....+|...|.++.|+| ++
T Consensus        17 ~~~~gh~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~-----------------~~~~~h~~~v~~~~~~~-~~   77 (312)
T 4ery_A           17 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFE-----------------KTISGHKLGISDVAWSS-DS   77 (312)
T ss_dssp             EEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEE-----------------EEECCCSSCEEEEEECT-TS
T ss_pred             EEEcccCCcEEEEEECC-CCCEEEEeeCCCeEEEEeCCCcccc-----------------hhhccCCCceEEEEEcC-CC
Confidence            34679999999999997 6789999999999999998765321                 12357999999999987 78


Q ss_pred             cEEEEEeCCCeEEEEECCCCeeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEE
Q 013274          117 GLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT  195 (446)
Q Consensus       117 ~~l~s~s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~s  195 (446)
                      ++|++++.|++|++||+.+++++..+.. .+.+..+.+.+.   ..++++|+.|+.|++||+++++.+..+..|..+|.+
T Consensus        78 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~  154 (312)
T 4ery_A           78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ---SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA  154 (312)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS---SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred             CEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEE
Confidence            8999999999999999999988877763 455778888874   458999999999999999999999999999999999


Q ss_pred             EEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCc
Q 013274          196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNG  275 (446)
Q Consensus       196 v~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (446)
                      +.|+|+++. |++++.||.|++||++++.++..+.                                             
T Consensus       155 ~~~~~~~~~-l~~~~~d~~i~~wd~~~~~~~~~~~---------------------------------------------  188 (312)
T 4ery_A          155 VHFNRDGSL-IVSSSYDGLCRIWDTASGQCLKTLI---------------------------------------------  188 (312)
T ss_dssp             EEECTTSSE-EEEEETTSCEEEEETTTCCEEEEEC---------------------------------------------
T ss_pred             EEEcCCCCE-EEEEeCCCcEEEEECCCCceeeEEe---------------------------------------------
Confidence            999999885 7899999999999998765433220                                             


Q ss_pred             eeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeec
Q 013274          276 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT  355 (446)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~  355 (446)
                                                    ..|..++..++|+|++.+|++++.|+.|++||+.+++... .+.... ..
T Consensus       189 ------------------------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~-~~  236 (312)
T 4ery_A          189 ------------------------------DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK-TYTGHK-NE  236 (312)
T ss_dssp             ------------------------------CSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE-EECSSC-CS
T ss_pred             ------------------------------ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE-EEEecC-Cc
Confidence                                          1233468899999999999999999999999998875321 111100 01


Q ss_pred             CCCeEEEE-cCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEee--CCCcEEEeCCC
Q 013274          356 SKPIQLAT-TQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGG--NDRQILVWCPS  426 (446)
Q Consensus       356 ~~~~~~~~-~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs--~D~~v~vW~~~  426 (446)
                      .......+ .+++..+++++. ..+++||+.+++.+..+.+|.+.|.+++|+|++++|++++  .|++|++|+.+
T Consensus       237 ~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          237 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             SSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             eEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            11222333 355666666654 5799999999999999999999999999999999999987  69999999865

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=9.1e-41  Score=320.59  Aligned_cols=291  Identities=15%  Similarity=0.204  Sum_probs=220.2

Q ss_pred             CCCccceeEEEeecCCCCEEEEeeC------CCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEee
Q 013274           40 SPHKGSINSLQVDLTEERYLLSGAS------DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYP  113 (446)
Q Consensus        40 ~~H~~~v~~l~~s~~~~~~l~s~s~------Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~  113 (446)
                      ..|.+.|++|+|+| ||++|||||.      |++|++|+..++.....   +          .....+|...|.++.|+|
T Consensus        39 ~~H~~~V~~v~fSp-DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~---~----------~~~~~~~~~~V~~~~~s~  104 (357)
T 4g56_B           39 ACMEVQIGAVRYRR-DGALLLAASSLSSRTWGGSIWVFKDPEGAPNES---L----------CTAGVQTEAGVTDVAWVS  104 (357)
T ss_dssp             -CCCSEEEEEEECS-SSCEEEEEECSSSSSCCEEEEEESSCC---CGG---G----------CSEEEECSSCEEEEEEET
T ss_pred             ccccCCEEEEEECC-CCCEEEEEcCCCCccccCeEEEEECCCCCccee---E----------ecccCCCCCCEEEEEEcC
Confidence            46999999999997 6899999998      77899998765532110   0          011236888999999987


Q ss_pred             cCCcEEEEEeCCCeEEEEECCCCeeeEE--E---ecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeC
Q 013274          114 VDTGLFVTGSYDHYVKVWDTNCTRVVMN--F---KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG  188 (446)
Q Consensus       114 ~~~~~l~s~s~D~~i~iWd~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~  188 (446)
                       ++ .+++++.|++|+|||+.+++....  +   .+.+.+.++++++.   ..+|++|+.|+.|++||+++++++..+.+
T Consensus       105 -d~-~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spd---g~~l~sgs~dg~v~iwd~~~~~~~~~~~~  179 (357)
T 4g56_B          105 -EK-GILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSD---GTQAVSGGKDFSVKVWDLSQKAVLKSYNA  179 (357)
T ss_dssp             -TT-EEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSS---SSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             -CC-CEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCC---CCEEEEEeCCCeEEEEECCCCcEEEEEcC
Confidence             44 567789999999999988764322  2   24456888898875   45899999999999999999999999999


Q ss_pred             CCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccc
Q 013274          189 HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQK  268 (446)
Q Consensus       189 h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (446)
                      |.+.|.+++|+|+++.++++++.||+|++||++++++...+                                       
T Consensus       180 h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~---------------------------------------  220 (357)
T 4g56_B          180 HSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI---------------------------------------  220 (357)
T ss_dssp             CSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC---------------------------------------
T ss_pred             CCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee---------------------------------------
Confidence            99999999999998767899999999999999865321100                                       


Q ss_pred             cccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCC-CEEEEeecCCcEEEEecCcCceeeee
Q 013274          269 RSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVESGRNTLVN  347 (446)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~sgs~D~~i~lWd~~~~~~~~~~  347 (446)
                                                         ....|...+.+++|+|++ .+|++|+.|+.|++||+.+++...  
T Consensus       221 -----------------------------------~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~--  263 (357)
T 4g56_B          221 -----------------------------------DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQ--  263 (357)
T ss_dssp             -----------------------------------CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCE--
T ss_pred             -----------------------------------eeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeE--
Confidence                                               012345679999999984 689999999999999999875421  


Q ss_pred             eeEEEeecCCCeEEEEcCCC-cEEEEeC-CCceEEEEeecCceEEEecccccceEEEEEcC-CCCEEEEeeCCCcEEEeC
Q 013274          348 FETVRLQTSKPIQLATTQDP-AVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS-QDQELYTGGNDRQILVWC  424 (446)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSp-d~~~lvtgs~D~~v~vW~  424 (446)
                        .+..+......++++|++ .++++++ +..+++||+.+++.+..+ +|.+.|++|+||| |+++|+|||.|++|++|+
T Consensus       264 --~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~  340 (357)
T 4g56_B          264 --TSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHH  340 (357)
T ss_dssp             --EECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred             --EEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEE
Confidence              222233455678888876 4566654 468999999988877655 8999999999999 899999999999999999


Q ss_pred             CCCC
Q 013274          425 PSRH  428 (446)
Q Consensus       425 ~~~~  428 (446)
                      ++..
T Consensus       341 ~~~~  344 (357)
T 4g56_B          341 LPSE  344 (357)
T ss_dssp             CC--
T ss_pred             CCCC
Confidence            8644

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.4e-40  Score=314.35  Aligned_cols=298  Identities=18%  Similarity=0.292  Sum_probs=227.8

Q ss_pred             EeCCCcc-ceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC
Q 013274           38 IVSPHKG-SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (446)
Q Consensus        38 ~~~~H~~-~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~  116 (446)
                      .+.+|.+ .|++|+|+| ++++||||+.|++|+|||++++...          ..    .....+|...|.++.|+| ++
T Consensus        10 ~~~~h~~~~v~~l~~sp-~g~~las~~~D~~i~iw~~~~~~~~----------~~----~~~~~~h~~~v~~~~~sp-~g   73 (345)
T 3fm0_A           10 RVPAHPDSRCWFLAWNP-AGTLLASCGGDRRIRIWGTEGDSWI----------CK----SVLSEGHQRTVRKVAWSP-CG   73 (345)
T ss_dssp             EECCSTTSCEEEEEECT-TSSCEEEEETTSCEEEEEEETTEEE----------EE----EEECSSCSSCEEEEEECT-TS
T ss_pred             eecCCCCCcEEEEEECC-CCCEEEEEcCCCeEEEEEcCCCcce----------ee----eeeccccCCcEEEEEECC-CC
Confidence            3578987 999999997 6789999999999999998754310          00    011258999999999987 78


Q ss_pred             cEEEEEeCCCeEEEEECCCCe--eeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc---eeeeeeCCC
Q 013274          117 GLFVTGSYDHYVKVWDTNCTR--VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA---ISQTLSGHR  190 (446)
Q Consensus       117 ~~l~s~s~D~~i~iWd~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~---~~~~l~~h~  190 (446)
                      ++|++|+.|++|++||+..+.  ++..+. +.+.+.+++++|.   ..+|++|+.|+.|++||++++.   .+..+.+|.
T Consensus        74 ~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~---~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~  150 (345)
T 3fm0_A           74 NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPS---GNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHT  150 (345)
T ss_dssp             SEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTT---SSEEEEEETTSCEEEEEECTTSCEEEEEEECCCC
T ss_pred             CEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCC---CCEEEEEECCCeEEEEECCCCCCeEEEEEecCcC
Confidence            899999999999999988764  344443 3456888999884   4589999999999999998764   456788999


Q ss_pred             CCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccc
Q 013274          191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRS  270 (446)
Q Consensus       191 ~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (446)
                      ..|.+++|+|+++. |++++.|++|++||++.+.....                                          
T Consensus       151 ~~v~~~~~~p~~~~-l~s~s~d~~i~~w~~~~~~~~~~------------------------------------------  187 (345)
T 3fm0_A          151 QDVKHVVWHPSQEL-LASASYDDTVKLYREEEDDWVCC------------------------------------------  187 (345)
T ss_dssp             SCEEEEEECSSSSC-EEEEETTSCEEEEEEETTEEEEE------------------------------------------
T ss_pred             CCeEEEEECCCCCE-EEEEeCCCcEEEEEecCCCEEEE------------------------------------------
Confidence            99999999999885 78999999999999875421100                                          


Q ss_pred             cCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceee-----
Q 013274          271 ANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTL-----  345 (446)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~-----  345 (446)
                                                      ....+|.+.|.+|+|+|+|++|++|+.|++|++||........     
T Consensus       188 --------------------------------~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~  235 (345)
T 3fm0_A          188 --------------------------------ATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACS  235 (345)
T ss_dssp             --------------------------------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC
T ss_pred             --------------------------------EEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceee
Confidence                                            0123678889999999999999999999999999974321100     


Q ss_pred             ------eeeeEEE-eecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCc---------eEEEecccccceEEEEEcCCC
Q 013274          346 ------VNFETVR-LQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGK---------TCLTFRGHYEYVNCCCFSSQD  408 (446)
Q Consensus       346 ------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~---------~~~~l~gH~~~v~~~~fSpd~  408 (446)
                            ..+..+. .+......+++++++..+++++. ..+++|++..+.         ....+.+|.+.|++|+|+|++
T Consensus       236 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~  315 (345)
T 3fm0_A          236 GSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKE  315 (345)
T ss_dssp             ---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSS
T ss_pred             ccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCC
Confidence                  0001111 12234556788888887777654 689999987543         123457999999999999998


Q ss_pred             -CEEEEeeCCCcEEEeCCCCCC
Q 013274          409 -QELYTGGNDRQILVWCPSRHI  429 (446)
Q Consensus       409 -~~lvtgs~D~~v~vW~~~~~~  429 (446)
                       .+|||||.|++|++|++....
T Consensus       316 ~~~laS~s~Dg~v~~W~~~~~~  337 (345)
T 3fm0_A          316 PGLLASCSDDGEVAFWKYQRPE  337 (345)
T ss_dssp             TTEEEEEETTSCEEEEEECC--
T ss_pred             ceEEEEcCCCCcEEEEEecCCC
Confidence             599999999999999987654

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3.5e-41  Score=332.25  Aligned_cols=299  Identities=17%  Similarity=0.219  Sum_probs=223.7

Q ss_pred             EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (446)
Q Consensus        38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~  117 (446)
                      ...+|...|++|+|+|.++++||+|+.||+|+|||+.++...          .     .....+|.+.|+++.|+|.++.
T Consensus       114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~----------~-----~~~~~gH~~~V~~l~f~p~~~~  178 (435)
T 4e54_B          114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP----------T-----FIKGIGAGGSITGLKFNPLNTN  178 (435)
T ss_dssp             EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC----------E-----EECCCSSSCCCCEEEECSSCTT
T ss_pred             cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce----------e-----EEEccCCCCCEEEEEEeCCCCC
Confidence            345789999999999878889999999999999998765321          0     0123589999999999988889


Q ss_pred             EEEEEeCCCeEEEEECCCCeeeEEEecCC---ceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeE
Q 013274          118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPG---KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM  194 (446)
Q Consensus       118 ~l~s~s~D~~i~iWd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~  194 (446)
                      +|+|||.|++|++||++++..........   .+.++++++   +..+|++|+.|+.|++||++. +.+..+.+|.+.|.
T Consensus       179 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~  254 (435)
T 4e54_B          179 QFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSA---SSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVT  254 (435)
T ss_dssp             EEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEET---TTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEE
T ss_pred             EEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECC---CCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEE
Confidence            99999999999999998765443333222   234556665   345899999999999999965 56678899999999


Q ss_pred             EEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCC
Q 013274          195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGN  274 (446)
Q Consensus       195 sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (446)
                      +++|+|+++.+|++|+.|++|++||+++......                                              
T Consensus       255 ~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~----------------------------------------------  288 (435)
T 4e54_B          255 HVALNPCCDWFLATASVDQTVKIWDLRQVRGKAS----------------------------------------------  288 (435)
T ss_dssp             EEEECTTCSSEEEEEETTSBCCEEETTTCCSSSC----------------------------------------------
T ss_pred             eeeecCCCceEEEEecCcceeeEEecccccccce----------------------------------------------
Confidence            9999999888889999999999999986421000                                              


Q ss_pred             ceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEE--E
Q 013274          275 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV--R  352 (446)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~--~  352 (446)
                                                 .....+|..+|++|+|+|+|.+|+||+.|++|++||+.++..........  .
T Consensus       289 ---------------------------~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~  341 (435)
T 4e54_B          289 ---------------------------FLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRH  341 (435)
T ss_dssp             ---------------------------CSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCC
T ss_pred             ---------------------------EEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccc
Confidence                                       00123688889999999999999999999999999998865432211100  0


Q ss_pred             eecCCCeEEEEcCCCcEEEEeC-----------C--CceEEEEeecCceEEEe-cccccceEEE-EEcCCCCEEEEeeCC
Q 013274          353 LQTSKPIQLATTQDPAVVFVPC-----------M--TAVKAFDIWSGKTCLTF-RGHYEYVNCC-CFSSQDQELYTGGND  417 (446)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~-----------~--~~~~~~d~~~~~~~~~l-~gH~~~v~~~-~fSpd~~~lvtgs~D  417 (446)
                      ..........+.++...++++.           .  ..+++||+.+++.+..+ .+|...|.++ +|||||++|++|+ |
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d  420 (435)
T 4e54_B          342 FQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-G  420 (435)
T ss_dssp             CSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-S
T ss_pred             cccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-C
Confidence            0011122334444444443332           1  25899999999988776 4788899887 6999999999987 7


Q ss_pred             CcEEEeCCCCCC
Q 013274          418 RQILVWCPSRHI  429 (446)
Q Consensus       418 ~~v~vW~~~~~~  429 (446)
                      ++|+||+++.++
T Consensus       421 ~~i~iW~~~~gk  432 (435)
T 4e54_B          421 YHILIWSQQEAR  432 (435)
T ss_dssp             SEEEECCCC---
T ss_pred             CcEEEEECCcCe
Confidence            899999998664

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=4.8e-40  Score=337.93  Aligned_cols=363  Identities=18%  Similarity=0.253  Sum_probs=244.4

Q ss_pred             EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (446)
Q Consensus        38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~  117 (446)
                      .+.+|.+.|++++|+|++...|+|||.|++|++||..+...                 ...+.+|...|.++.|+| +++
T Consensus       142 ~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~-----------------~~~l~~H~~~V~~v~fsp-dg~  203 (611)
T 1nr0_A          142 NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF-----------------KSTFGEHTKFVHSVRYNP-DGS  203 (611)
T ss_dssp             CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE-----------------EEEECCCSSCEEEEEECT-TSS
T ss_pred             eecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeE-----------------eeeeccccCceEEEEECC-CCC
Confidence            46799999999999985444799999999999999765321                 112358999999999987 789


Q ss_pred             EEEEEeCCCeEEEEECCCCeeeEEEe--------cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceee-----
Q 013274          118 LFVTGSYDHYVKVWDTNCTRVVMNFK--------MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ-----  184 (446)
Q Consensus       118 ~l~s~s~D~~i~iWd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~-----  184 (446)
                      +|+||+.|++|++||+.+++.+..+.        +.+.+..++|+|+   ..+|++++.|+.|++||++++++..     
T Consensus       204 ~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spd---g~~l~s~s~D~~v~lWd~~~~~~~~~~~~~  280 (611)
T 1nr0_A          204 LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD---GTKIASASADKTIKIWNVATLKVEKTIPVG  280 (611)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTT---SSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             EEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCC---CCEEEEEeCCCeEEEEeCCCCceeeeecCC
Confidence            99999999999999999988877762        4567889999885   3589999999999999998875433     


Q ss_pred             --------------------------------------eeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCcee
Q 013274          185 --------------------------------------TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCF  226 (446)
Q Consensus       185 --------------------------------------~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~  226 (446)
                                                            .+.+|...|++++|+|++++ |+|++.|++|++||++++.+.
T Consensus       281 ~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~-l~s~s~D~~v~~Wd~~~~~~~  359 (611)
T 1nr0_A          281 TRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKT-LFSADAEGHINSWDISTGISN  359 (611)
T ss_dssp             SSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCEE
T ss_pred             CCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCE-EEEEeCCCcEEEEECCCCcee
Confidence                                                  34589999999999999985 789999999999999987765


Q ss_pred             EEeec-ccccccCCCcccccc-eeec--cccccCCCCCcCCCCc----cccccCCCceeecccceeecCC--ccccccCC
Q 013274          227 RVLDQ-SQSQLGRRPPLLKRK-VSIS--KSLSAGQNSSVKPRAP----QKRSANGNGVRQSSVGRIPAKG--SVRQRLHP  296 (446)
Q Consensus       227 ~~~~~-~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  296 (446)
                      ..+.. +...+.......... +...  ..+.............    .........+..++.+......  ........
T Consensus       360 ~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~  439 (611)
T 1nr0_A          360 RVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSH  439 (611)
T ss_dssp             ECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEET
T ss_pred             eecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeC
Confidence            43311 111000000000000 0000  0000000000000000    0000000111111111110000  00000000


Q ss_pred             CcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-
Q 013274          297 GMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-  375 (446)
Q Consensus       297 ~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  375 (446)
                      +.    .....|...+.+++|+|||++|++|+.|++|++||+.++....  ... ..+......++++|++.++++++. 
T Consensus       440 ~~----~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~--~~~-~~h~~~v~~v~fspdg~~las~s~d  512 (611)
T 1nr0_A          440 GK----LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE--VKT-IVHPAEITSVAFSNNGAFLVATDQS  512 (611)
T ss_dssp             TE----EEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE--EEE-EECSSCEEEEEECTTSSEEEEEETT
T ss_pred             Cc----eeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceee--eec-cCCCCceEEEEECCCCCEEEEEcCC
Confidence            00    0112366779999999999999999999999999998753211  111 233456678999999999888754 


Q ss_pred             CceEEEEeec-CceEEE--ecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCC
Q 013274          376 TAVKAFDIWS-GKTCLT--FRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI  429 (446)
Q Consensus       376 ~~~~~~d~~~-~~~~~~--l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~  429 (446)
                      ..+++|++.+ ++....  +.+|.+.|++++||||+++|+|||.|++|+||+++.+.
T Consensus       513 ~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~  569 (611)
T 1nr0_A          513 RKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS  569 (611)
T ss_dssp             SCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred             CCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence            6899999987 555443  45599999999999999999999999999999997653

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-38  Score=303.01  Aligned_cols=293  Identities=20%  Similarity=0.294  Sum_probs=216.6

Q ss_pred             EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (446)
Q Consensus        38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~  117 (446)
                      .+.+|++.|++++|+++   +|+||+.|++|+|||++.+..          ......   ...+|...|.++.|+| ++.
T Consensus         9 ~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~----------~~~~~~---~~~~h~~~v~~v~~sp-~~~   71 (330)
T 2hes_X            9 SLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDF----------TLIDVL---DETAHKKAIRSVAWRP-HTS   71 (330)
T ss_dssp             EEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCC----------EEEEEE---CTTCCCSCEEEEEECT-TSS
T ss_pred             eeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCe----------EEEEEE---ecCCccCCEEEEEECC-CCC
Confidence            46799999999999862   899999999999999975421          000011   1124999999999987 788


Q ss_pred             EEEEEeCCCeEEEEECCC-------CeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC----ceeee
Q 013274          118 LFVTGSYDHYVKVWDTNC-------TRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG----AISQT  185 (446)
Q Consensus       118 ~l~s~s~D~~i~iWd~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~----~~~~~  185 (446)
                      +|++|+.|++|++||+..       .+++..+. +.+.+.+++++|.   ..+|++|+.|+.|++||++..    +++..
T Consensus        72 ~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~---g~~las~s~D~~v~iwd~~~~~~~~~~~~~  148 (330)
T 2hes_X           72 LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND---GYYLATCSRDKSVWIWETDESGEEYECISV  148 (330)
T ss_dssp             EEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTT---SCEEEEEETTSCEEEEECCTTCCCCEEEEE
T ss_pred             EEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCC---CCEEEEEeCCCEEEEEeccCCCCCeEEEEE
Confidence            999999999999999853       23333343 3456888888875   458999999999999999532    45678


Q ss_pred             eeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCc--eeEEeecccccccCCCcccccceeeccccccCCCCCcCC
Q 013274          186 LSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG--CFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKP  263 (446)
Q Consensus       186 l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (446)
                      +.+|...|.+++|+|+++ +|+||+.|++|++||++.+.  ++.                                    
T Consensus       149 ~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~iW~~~~~~~~~~~------------------------------------  191 (330)
T 2hes_X          149 LQEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDDDWECVA------------------------------------  191 (330)
T ss_dssp             ECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEE------------------------------------
T ss_pred             eccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCCeeEEE------------------------------------
Confidence            899999999999999987 47999999999999986531  111                                    


Q ss_pred             CCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccC--CCEEEEeecCCcEEEEecCcC
Q 013274          264 RAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED--GMYLLSAGSDSRIRLWDVESG  341 (446)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~d--g~~l~sgs~D~~i~lWd~~~~  341 (446)
                                                              ...+|.+.|.+++|+|+  +.+|+||+.|++|++||+.++
T Consensus       192 ----------------------------------------~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~  231 (330)
T 2hes_X          192 ----------------------------------------VLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD  231 (330)
T ss_dssp             ----------------------------------------EECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred             ----------------------------------------EccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence                                                    12468888999999999  779999999999999998764


Q ss_pred             cee----eeeeeEEEe-ecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCc--eE-EEeccccc-ceEEEEEcC--CCCE
Q 013274          342 RNT----LVNFETVRL-QTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGK--TC-LTFRGHYE-YVNCCCFSS--QDQE  410 (446)
Q Consensus       342 ~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~-~~l~gH~~-~v~~~~fSp--d~~~  410 (446)
                      ...    ......+.. +......+++++++.++..+.+..+++|+..+++  .. ..+.+|.. .|++++|+|  |+++
T Consensus       232 ~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~  311 (330)
T 2hes_X          232 DEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTI  311 (330)
T ss_dssp             CTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CC
T ss_pred             CccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceE
Confidence            210    011111111 2334556777776655555566789999998774  33 34578987 899999999  7899


Q ss_pred             EEEeeCCCcEEEeCCCC
Q 013274          411 LYTGGNDRQILVWCPSR  427 (446)
Q Consensus       411 lvtgs~D~~v~vW~~~~  427 (446)
                      |+|||.|++|+||+++.
T Consensus       312 las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          312 LATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EEEEETTSEEEEEEC--
T ss_pred             EEEecCCCcEEEEEecc
Confidence            99999999999999865

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=6.9e-39  Score=329.37  Aligned_cols=303  Identities=17%  Similarity=0.238  Sum_probs=232.8

Q ss_pred             cceeEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEee
Q 013274           34 NYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYP  113 (446)
Q Consensus        34 ~~~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~  113 (446)
                      .....+.+|++.|++++|+| ++++||||+.|++|+|||+.++...            .   .....+|...|.++.|+|
T Consensus        50 ~~~~~~~~h~~~v~~~~~sp-dg~~lasg~~d~~v~lWd~~~~~~~------------~---~~~~~~~~~~v~~v~fs~  113 (611)
T 1nr0_A           50 TDTEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTTQTTHI------------L---KTTIPVFSGPVKDISWDS  113 (611)
T ss_dssp             SCCEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEESSSTTCC------------E---EEEEECSSSCEEEEEECT
T ss_pred             ccCeEecCCCCceEEEEECC-CCcEEEEEeCCCCEEEeECCCCcce------------e---eEeecccCCceEEEEECC
Confidence            33456789999999999997 6899999999999999998654311            0   112357899999999987


Q ss_pred             cCCcEEEEEeCC----CeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeC
Q 013274          114 VDTGLFVTGSYD----HYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG  188 (446)
Q Consensus       114 ~~~~~l~s~s~D----~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~  188 (446)
                       ++++|++++.|    ++|++||.  ++....+. +.+.+.+++|+|...  .+|++|+.|+.|++||..++++...+.+
T Consensus       114 -dg~~l~~~~~~~~~~~~v~~wd~--~~~~~~l~gh~~~v~~v~f~p~~~--~~l~s~s~D~~v~lwd~~~~~~~~~l~~  188 (611)
T 1nr0_A          114 -ESKRIAAVGEGRERFGHVFLFDT--GTSNGNLTGQARAMNSVDFKPSRP--FRIISGSDDNTVAIFEGPPFKFKSTFGE  188 (611)
T ss_dssp             -TSCEEEEEECCSSCSEEEEETTT--CCBCBCCCCCSSCEEEEEECSSSS--CEEEEEETTSCEEEEETTTBEEEEEECC
T ss_pred             -CCCEEEEEECCCCceeEEEEeeC--CCCcceecCCCCCceEEEECCCCC--eEEEEEeCCCeEEEEECCCCeEeeeecc
Confidence             78899988876    47888885  44443333 345688899988532  4699999999999999999998999999


Q ss_pred             CCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccc
Q 013274          189 HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQK  268 (446)
Q Consensus       189 h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (446)
                      |.+.|.+++|+|+++. |+||+.|++|++||++++.+...+...                                    
T Consensus       189 H~~~V~~v~fspdg~~-las~s~D~~i~lwd~~~g~~~~~~~~~------------------------------------  231 (611)
T 1nr0_A          189 HTKFVHSVRYNPDGSL-FASTGGDGTIVLYNGVDGTKTGVFEDD------------------------------------  231 (611)
T ss_dssp             CSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCEEEECBCT------------------------------------
T ss_pred             ccCceEEEEECCCCCE-EEEEECCCcEEEEECCCCcEeeeeccc------------------------------------
Confidence            9999999999999985 799999999999999876554332100                                    


Q ss_pred             cccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeee
Q 013274          269 RSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNF  348 (446)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~  348 (446)
                                                       .....+|.+.|.+++|+|+|++|+|++.|++|++||+.+++... .+
T Consensus       232 ---------------------------------~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~-~~  277 (611)
T 1nr0_A          232 ---------------------------------SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEK-TI  277 (611)
T ss_dssp             ---------------------------------TSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EE
T ss_pred             ---------------------------------cccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceee-ee
Confidence                                             00013688899999999999999999999999999999875321 11


Q ss_pred             eEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC
Q 013274          349 ETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH  428 (446)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~  428 (446)
                      ............+.+ ....++.......+++|+..+++....+.+|.+.|++++||||+++|+||+.|++|++|++.+.
T Consensus       278 ~~~~~~~~~~~~~~~-~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~  356 (611)
T 1nr0_A          278 PVGTRIEDQQLGIIW-TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG  356 (611)
T ss_dssp             ECCSSGGGCEEEEEE-CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             cCCCCccceeEEEEE-cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Confidence            100000011122233 2233344445678999999888888899999999999999999999999999999999999865


Q ss_pred             C
Q 013274          429 I  429 (446)
Q Consensus       429 ~  429 (446)
                      .
T Consensus       357 ~  357 (611)
T 1nr0_A          357 I  357 (611)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=9.1e-39  Score=333.41  Aligned_cols=294  Identities=20%  Similarity=0.341  Sum_probs=235.3

Q ss_pred             eEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC
Q 013274           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (446)
Q Consensus        37 ~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~  116 (446)
                      ..+.+|++.|++|+|+++++++|+|||.|++|+|||+.+......         .   ......+|...|.++.++| ++
T Consensus       376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~---------~---~~~~~~~h~~~v~~v~~s~-~g  442 (694)
T 3dm0_A          376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG---------V---AQRRLTGHSHFVEDVVLSS-DG  442 (694)
T ss_dssp             EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC---------E---EEEEEECCSSCEEEEEECT-TS
T ss_pred             hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc---------c---ccceecCCCCcEEEEEECC-CC
Confidence            357899999999999987778999999999999999875432100         0   0123468999999999987 78


Q ss_pred             cEEEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeee---eeCCCCC
Q 013274          117 GLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT---LSGHRDG  192 (446)
Q Consensus       117 ~~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~---l~~h~~~  192 (446)
                      ++|+||+.|++|++||+.++..+..+. +.+.+.++++++..   .+|++|+.|+.|++||+........   ..+|...
T Consensus       443 ~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~---~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~  519 (694)
T 3dm0_A          443 QFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDN---RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDW  519 (694)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS---SCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSC
T ss_pred             CEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCC---CEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCc
Confidence            999999999999999999998887765 45668888988753   4789999999999999876543322   2579999


Q ss_pred             eEEEEEecCCC-eEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCcccccc
Q 013274          193 IMTVEWSTSSE-WILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSA  271 (446)
Q Consensus       193 v~sv~~s~~~~-~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (446)
                      |.+++|+|++. ..++|++.|++|++||+++..+...                                           
T Consensus       520 v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~-------------------------------------------  556 (694)
T 3dm0_A          520 VSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRST-------------------------------------------  556 (694)
T ss_dssp             EEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEE-------------------------------------------
T ss_pred             EEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEE-------------------------------------------
Confidence            99999999862 3579999999999999986543221                                           


Q ss_pred             CCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEE
Q 013274          272 NGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV  351 (446)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~  351 (446)
                                                       ..+|.+.|++++|+|+|.+|+||+.|++|++||+.+++... .+.  
T Consensus       557 ---------------------------------~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~-~~~--  600 (694)
T 3dm0_A          557 ---------------------------------LAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLY-SLE--  600 (694)
T ss_dssp             ---------------------------------ECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEE-CCB--
T ss_pred             ---------------------------------EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEE-Eec--
Confidence                                             23678889999999999999999999999999999875321 111  


Q ss_pred             EeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccc-------------------cceEEEEEcCCCCEEE
Q 013274          352 RLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHY-------------------EYVNCCCFSSQDQELY  412 (446)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~-------------------~~v~~~~fSpd~~~lv  412 (446)
                        .......++++|++..++.+....+++||+.+++.+..+..|.                   -.+++++||||+++|+
T Consensus       601 --~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~  678 (694)
T 3dm0_A          601 --ANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLF  678 (694)
T ss_dssp             --CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEE
T ss_pred             --CCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEE
Confidence              1234456889999998888888889999999988877665432                   2378999999999999


Q ss_pred             EeeCCCcEEEeCCCC
Q 013274          413 TGGNDRQILVWCPSR  427 (446)
Q Consensus       413 tgs~D~~v~vW~~~~  427 (446)
                      |||.|++|+||++.+
T Consensus       679 sgs~Dg~i~iW~i~~  693 (694)
T 3dm0_A          679 SGYTDGVIRVWGIGR  693 (694)
T ss_dssp             EEETTSEEEEEEC--
T ss_pred             EEcCCCeEEEEeccC
Confidence            999999999999864

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2.5e-38  Score=306.21  Aligned_cols=296  Identities=17%  Similarity=0.223  Sum_probs=225.8

Q ss_pred             eeEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecC
Q 013274           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (446)
Q Consensus        36 ~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~  115 (446)
                      ...+.+|.+.|++++|+|++.++|++|+.||+|+|||+.++...            ..   ....+|...|.++.|+|.+
T Consensus        66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~------------~~---~~~~~h~~~v~~~~~~~~~  130 (383)
T 3ei3_B           66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT------------SF---IQGMGPGDAITGMKFNQFN  130 (383)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE------------EE---ECCCSTTCBEEEEEEETTE
T ss_pred             EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc------------ee---eecCCcCCceeEEEeCCCC
Confidence            34567999999999999754389999999999999999865421            00   1124799999999998867


Q ss_pred             CcEEEEEeCCCeEEEEECCCCeeeEEEe-cC---CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCC
Q 013274          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFK-MP---GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD  191 (446)
Q Consensus       116 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~  191 (446)
                      +.+|++++.|++|++||+.... +..+. ..   ..+.++++++.   ..+|++|+.|+.|++||+ ++..+..+.+|.+
T Consensus       131 ~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~  205 (383)
T 3ei3_B          131 TNQLFVSSIRGATTLRDFSGSV-IQVFAKTDSWDYWYCCVDVSVS---RQMLATGDSTGRLLLLGL-DGHEIFKEKLHKA  205 (383)
T ss_dssp             EEEEEEEETTTEEEEEETTSCE-EEEEECCCCSSCCEEEEEEETT---TTEEEEEETTSEEEEEET-TSCEEEEEECSSS
T ss_pred             CCEEEEEeCCCEEEEEECCCCc-eEEEeccCCCCCCeEEEEECCC---CCEEEEECCCCCEEEEEC-CCCEEEEeccCCC
Confidence            7899999999999999998644 33333 22   44788888874   358999999999999999 5778889999999


Q ss_pred             CeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCcccccc
Q 013274          192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSA  271 (446)
Q Consensus       192 ~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (446)
                      .|.+++|+|+++++|++++.|++|++||+++.+...                                            
T Consensus       206 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--------------------------------------------  241 (383)
T 3ei3_B          206 KVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKN--------------------------------------------  241 (383)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTT--------------------------------------------
T ss_pred             cEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCccc--------------------------------------------
Confidence            999999999998668999999999999998632000                                            


Q ss_pred             CCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEcc-CCCEEEEeecCCcEEEEecCcCceeeeeeeE
Q 013274          272 NGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE-DGMYLLSAGSDSRIRLWDVESGRNTLVNFET  350 (446)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~  350 (446)
                                       .            .....+|.+.|.+++|+| +|.+|++++.|++|++||+.+++.... +..
T Consensus       242 -----------------~------------~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~  291 (383)
T 3ei3_B          242 -----------------S------------YIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQ-III  291 (383)
T ss_dssp             -----------------C------------EEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSE-EEE
T ss_pred             -----------------c------------eEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccc-ccc
Confidence                             0            000124677899999999 999999999999999999988653211 111


Q ss_pred             EE---eecCCCe-----------EEEEcCCCcEEEEeCCCceEEEEeecCceEEEecc--cccceEEEEEcCCCCEEEEe
Q 013274          351 VR---LQTSKPI-----------QLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRG--HYEYVNCCCFSSQDQELYTG  414 (446)
Q Consensus       351 ~~---~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~g--H~~~v~~~~fSpd~~~lvtg  414 (446)
                      ..   ......+           .+++++++.+ .......+++||+.+++.+.++.+  |...+.+++|+||+++|++|
T Consensus       292 ~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~  370 (383)
T 3ei3_B          292 HPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASG  370 (383)
T ss_dssp             CCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEE
T ss_pred             ccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEe
Confidence            00   0001112           2334444444 112346799999999999999987  56788889999999999999


Q ss_pred             eCCCcEEEeCCCC
Q 013274          415 GNDRQILVWCPSR  427 (446)
Q Consensus       415 s~D~~v~vW~~~~  427 (446)
                      + |++|+||++++
T Consensus       371 s-d~~i~iw~~~~  382 (383)
T 3ei3_B          371 M-GFNILIWNRED  382 (383)
T ss_dssp             E-TTEEEEEECC-
T ss_pred             c-CCcEEEEecCC
Confidence            7 99999999875

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=7.4e-38  Score=304.35  Aligned_cols=308  Identities=23%  Similarity=0.375  Sum_probs=229.1

Q ss_pred             CCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccc----eEEeccccccCccccEeEEEEeecCC
Q 013274           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRS----VFVVDKQHEHGHKYAISSAIWYPVDT  116 (446)
Q Consensus        41 ~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~gh~~~V~~~~~~~~~~  116 (446)
                      +|.+.|++++|+| ++++|++|+ |++++||++.++....   .+..+..    ...........+...|.++.|+| ++
T Consensus        62 ~h~~~V~~v~fsp-dg~~la~g~-~~~v~i~~~~~g~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-dg  135 (393)
T 1erj_A           62 DHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSLVA---RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP-DG  135 (393)
T ss_dssp             ECSSCCCEEEECT-TSSEEEEEC-BSCEEEEETTTCCEEE---EECC-----------------CCCCBEEEEEECT-TS
T ss_pred             CCCCEEEEEEECC-CCCEEEEEc-CCcEEEEEecCCCEEE---EecCccccccccccccccccCCCceeEEEEEECC-CC
Confidence            6999999999997 688999976 7899999998764311   0000000    00000000112344588988887 88


Q ss_pred             cEEEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEE
Q 013274          117 GLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT  195 (446)
Q Consensus       117 ~~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~s  195 (446)
                      ++|++|+.|++|++||+.+++.+..+. +.+.+.++++++..   .+|++++.|+.|++||++++.....+. +...+.+
T Consensus       136 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~---~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~  211 (393)
T 1erj_A          136 KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG---DKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTT  211 (393)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS---SEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEE
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCC---CEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEE
Confidence            999999999999999999998877765 44568888888753   478999999999999999998877775 5678999


Q ss_pred             EEEec-CCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCC
Q 013274          196 VEWST-SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGN  274 (446)
Q Consensus       196 v~~s~-~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (446)
                      ++|+| +++ +|++|+.|++|++||++++.++..+....                                         
T Consensus       212 ~~~~~~~~~-~l~~~s~d~~v~iwd~~~~~~~~~~~~~~-----------------------------------------  249 (393)
T 1erj_A          212 VAVSPGDGK-YIAAGSLDRAVRVWDSETGFLVERLDSEN-----------------------------------------  249 (393)
T ss_dssp             EEECSTTCC-EEEEEETTSCEEEEETTTCCEEEEEC--------------------------------------------
T ss_pred             EEEECCCCC-EEEEEcCCCcEEEEECCCCcEEEeecccc-----------------------------------------
Confidence            99999 555 58999999999999998765543331000                                         


Q ss_pred             ceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeee--------
Q 013274          275 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLV--------  346 (446)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~--------  346 (446)
                                                  ....+|...|.+++|+|+|.+|++|+.|++|++||+.+......        
T Consensus       250 ----------------------------~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~  301 (393)
T 1erj_A          250 ----------------------------ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT  301 (393)
T ss_dssp             -------------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------C
T ss_pred             ----------------------------cCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCc
Confidence                                        01136788899999999999999999999999999986432100        


Q ss_pred             eeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcC------CCCEEEEeeCCCc
Q 013274          347 NFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS------QDQELYTGGNDRQ  419 (446)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSp------d~~~lvtgs~D~~  419 (446)
                      .......+......+++++++..+++++. ..+++||+.+++.+..+.+|.+.|.+++|+|      ++++|+|||.|++
T Consensus       302 ~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~  381 (393)
T 1erj_A          302 CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCK  381 (393)
T ss_dssp             EEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSE
T ss_pred             ceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCc
Confidence            01111222334556788888888877654 5799999999999999999999999999986      6899999999999


Q ss_pred             EEEeCCCCC
Q 013274          420 ILVWCPSRH  428 (446)
Q Consensus       420 v~vW~~~~~  428 (446)
                      |+||+....
T Consensus       382 i~iW~~~~~  390 (393)
T 1erj_A          382 ARIWKYKKI  390 (393)
T ss_dssp             EEEEEEEEC
T ss_pred             EEECccccc
Confidence            999987543

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3.3e-37  Score=314.33  Aligned_cols=318  Identities=23%  Similarity=0.352  Sum_probs=237.4

Q ss_pred             EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (446)
Q Consensus        38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~  117 (446)
                      .+.+|...|++++|+| ++++|++++.|++|++||.+...                  .....+|...|.++.++| ++.
T Consensus       257 ~~~~~~~~v~~v~~~~-d~~~l~~~~~d~~i~~w~~~~~~------------------~~~~~~h~~~v~~~~~~~-~~~  316 (577)
T 2ymu_A          257 TLTGHSSSVNGVAFRP-DGQTIASASDDKTVKLWNRNGQL------------------LQTLTGHSSSVWGVAFSP-DGQ  316 (577)
T ss_dssp             EECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSCE------------------EEEECCCSSCEEEEEECT-TSS
T ss_pred             EEecCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCcE------------------EEEEecCCCCeEEEEECC-CCC
Confidence            4678999999999986 67899999999999999964311                  012358999999998887 788


Q ss_pred             EEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEE
Q 013274          118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVE  197 (446)
Q Consensus       118 ~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~  197 (446)
                      +|++++.|++|++||+..........+...+.++++++.   ..++++|+.|+.|++||. +++.+..+.+|...|.+++
T Consensus       317 ~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~  392 (577)
T 2ymu_A          317 TIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPD---GQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVA  392 (577)
T ss_dssp             EEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTT---SSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEE
T ss_pred             EEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCC---CCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEE
Confidence            999999999999999876655443334556788888874   458999999999999995 5677888999999999999


Q ss_pred             EecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCcee
Q 013274          198 WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVR  277 (446)
Q Consensus       198 ~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (446)
                      |+|++++ |++++.|+.|++||.. ++.+..+..+...+.                                     .+.
T Consensus       393 ~s~dg~~-l~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v~-------------------------------------~~~  433 (577)
T 2ymu_A          393 FSPDGQT-IASASDDKTVKLWNRN-GQLLQTLTGHSSSVW-------------------------------------GVA  433 (577)
T ss_dssp             ECTTSSC-EEEEETTSEEEEECTT-CCEEEEEECCSSCEE-------------------------------------EEE
T ss_pred             ECCCCCE-EEEEeCCCEEEEEeCC-CCEEEEecCCCCCeE-------------------------------------EEE
Confidence            9999986 7899999999999964 444444433221110                                     000


Q ss_pred             ecccceeecCCccccc--cCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeec
Q 013274          278 QSSVGRIPAKGSVRQR--LHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT  355 (446)
Q Consensus       278 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~  355 (446)
                      .++.....+.+..+..  +............+|...|++++|+|||++|++++.|++|++||.. ++.    ...+..+.
T Consensus       434 ~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~~~----~~~~~~h~  508 (577)
T 2ymu_A          434 FSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQL----LQTLTGHS  508 (577)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-SCE----EEEEECCS
T ss_pred             ECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-CCE----EEEEeCCC
Confidence            1111111110000000  0000000112345788999999999999999999999999999964 332    12233344


Q ss_pred             CCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeC
Q 013274          356 SKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC  424 (446)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~  424 (446)
                      .....++++|++.++++++. ..+++||. +++.+.++.+|.+.|++|+||||+++|+|+|.|++|++||
T Consensus       509 ~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          509 SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             SCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            55677899999998887755 57999995 7888999999999999999999999999999999999997

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.4e-37  Score=292.89  Aligned_cols=286  Identities=20%  Similarity=0.259  Sum_probs=238.3

Q ss_pred             eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (446)
Q Consensus        39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~  118 (446)
                      +.+|.+.|++|+|+| ++++|++|+.||.|++||+.++...                 ....+|...|.++.++| ++++
T Consensus        28 l~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~-----------------~~~~~h~~~v~~~~~~~-~~~~   88 (369)
T 3zwl_B           28 LTGHERPLTQVKYNK-EGDLLFSCSKDSSASVWYSLNGERL-----------------GTLDGHTGTIWSIDVDC-FTKY   88 (369)
T ss_dssp             EECCSSCEEEEEECT-TSCEEEEEESSSCEEEEETTTCCEE-----------------EEECCCSSCEEEEEECT-TSSE
T ss_pred             EEEeeceEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCchhh-----------------hhhhhcCCcEEEEEEcC-CCCE
Confidence            679999999999997 6889999999999999998765321                 12357999999999987 7889


Q ss_pred             EEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCC-----CcEEEEeCCCCc-----------e
Q 013274          119 FVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTED-----VQVRLCDIASGA-----------I  182 (446)
Q Consensus       119 l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d-----~~v~vwd~~~~~-----------~  182 (446)
                      |++++.|++|++||+.+++.+..+.....+..+.+++.   ..++++++.+     +.|++||++.+.           .
T Consensus        89 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~  165 (369)
T 3zwl_B           89 CVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPC---GNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEP  165 (369)
T ss_dssp             EEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTT---SSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSC
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccC---CCEEEEecCCccCCCCEEEEEEecCCccceeecccccce
Confidence            99999999999999999999988888888899999885   3478888888     999999997663           3


Q ss_pred             eeeeeCCCC--CeEEEEEecCCCeEEEEeeCCCcEEEEEccC-CceeEEeecccccccCCCcccccceeeccccccCCCC
Q 013274          183 SQTLSGHRD--GIMTVEWSTSSEWILVTGGCDGAIRFWDIRR-AGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNS  259 (446)
Q Consensus       183 ~~~l~~h~~--~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (446)
                      ...+..|.+  .+.+++|+|+++. |++++.||.|++||+++ ......                               
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~-------------------------------  213 (369)
T 3zwl_B          166 IHKIITHEGLDAATVAGWSTKGKY-IIAGHKDGKISKYDVSNNYEYVDS-------------------------------  213 (369)
T ss_dssp             SEEEECCTTCCCEEEEEECGGGCE-EEEEETTSEEEEEETTTTTEEEEE-------------------------------
T ss_pred             eeeccCCcCccceeEEEEcCCCCE-EEEEcCCCEEEEEECCCCcEeEEE-------------------------------
Confidence            445566766  9999999999885 78999999999999986 222211                               


Q ss_pred             CcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecC
Q 013274          260 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVE  339 (446)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~  339 (446)
                                                                   ...|.+.|.+++|+|++.+|++++.|+.|++||+.
T Consensus       214 ---------------------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~  248 (369)
T 3zwl_B          214 ---------------------------------------------IDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVS  248 (369)
T ss_dssp             ---------------------------------------------EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             ---------------------------------------------EecCCCceeEEEECCCCCEEEEecCCceEEEEECC
Confidence                                                         12466779999999999999999999999999999


Q ss_pred             cCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCC---------------ceEEEEeecCceEEEecccccceEEEEE
Q 013274          340 SGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMT---------------AVKAFDIWSGKTCLTFRGHYEYVNCCCF  404 (446)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~d~~~~~~~~~l~gH~~~v~~~~f  404 (446)
                      +++... .+   . .......+++++++..+++++..               .+++||+.+++....+.+|.+.|++++|
T Consensus       249 ~~~~~~-~~---~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  323 (369)
T 3zwl_B          249 TLQVLK-KY---E-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAI  323 (369)
T ss_dssp             TCCEEE-EE---E-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             CCceee-ee---c-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEE
Confidence            875321 11   1 23345667888888888776543               5899999999999999999999999999


Q ss_pred             cCCCCEEEEeeCCCcEEEeCCCCC
Q 013274          405 SSQDQELYTGGNDRQILVWCPSRH  428 (446)
Q Consensus       405 Spd~~~lvtgs~D~~v~vW~~~~~  428 (446)
                      +||+++|+||+.|++|+||+++..
T Consensus       324 s~~~~~l~s~~~dg~v~iw~~~~~  347 (369)
T 3zwl_B          324 SPQGTSYASGGEDGFIRLHHFEKS  347 (369)
T ss_dssp             CTTSSEEEEEETTSEEEEEEECHH
T ss_pred             CCCCCEEEEEcCCCeEEEEECccc
Confidence            999999999999999999999854

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=4.3e-37  Score=287.34  Aligned_cols=258  Identities=17%  Similarity=0.299  Sum_probs=200.7

Q ss_pred             EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeec-CC
Q 013274           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV-DT  116 (446)
Q Consensus        38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~-~~  116 (446)
                      ++.+|.+.|++++|+| ++++||||+.|++|+|||++....          +.     ...+.+|...|.++.|.++ ++
T Consensus         4 ~~~~h~~~V~~~~~s~-~g~~las~s~D~~v~iw~~~~~~~----------~~-----~~~l~gH~~~V~~v~~s~~~~g   67 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDY-YGKRMATCSSDKTIKIFEVEGETH----------KL-----IDTLTGHEGPVWRVDWAHPKFG   67 (297)
T ss_dssp             ECCSCSSCEEEEEECT-TSSEEEEEETTSCEEEEEBCSSCB----------CC-----CEEECCCSSCEEEEEECCGGGC
T ss_pred             eccCCcCceEEEEECC-CCCEEEEEeCCCEEEEEecCCCCc----------EE-----EEEEccccCCeEEEEecCCCcC
Confidence            4679999999999996 688999999999999999864321          00     1223689999999999754 57


Q ss_pred             cEEEEEeCCCeEEEEECCCCe--eeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc--eeeeeeCCCC
Q 013274          117 GLFVTGSYDHYVKVWDTNCTR--VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA--ISQTLSGHRD  191 (446)
Q Consensus       117 ~~l~s~s~D~~i~iWd~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~--~~~~l~~h~~  191 (446)
                      .+|+|||.|++|++||+.+++  .+..+. +...+.+++++|... ..+|++++.|+.|++||++++.  ....+.+|..
T Consensus        68 ~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~  146 (297)
T 2pm7_B           68 TILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEY-GPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAI  146 (297)
T ss_dssp             SEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGG-CSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSS
T ss_pred             CEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCC-CcEEEEEECCCcEEEEEecCCCceeeeeeecccC
Confidence            899999999999999998764  333333 445688889887521 3579999999999999998763  2467789999


Q ss_pred             CeEEEEEecCC------------CeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCC
Q 013274          192 GIMTVEWSTSS------------EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNS  259 (446)
Q Consensus       192 ~v~sv~~s~~~------------~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (446)
                      .|.+++|+|+.            ...|++|+.|++|++||++++.....+                              
T Consensus       147 ~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~------------------------------  196 (297)
T 2pm7_B          147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL------------------------------  196 (297)
T ss_dssp             CEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEE------------------------------
T ss_pred             ccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEE------------------------------
Confidence            99999999973            235899999999999998754210000                              


Q ss_pred             CcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCC---CEEEEeecCCcEEEE
Q 013274          260 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG---MYLLSAGSDSRIRLW  336 (446)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg---~~l~sgs~D~~i~lW  336 (446)
                                                                .....+|.+.|.+|+|+|++   .+|+|++.|++|++|
T Consensus       197 ------------------------------------------~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iW  234 (297)
T 2pm7_B          197 ------------------------------------------ESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIW  234 (297)
T ss_dssp             ------------------------------------------EEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred             ------------------------------------------EEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEE
Confidence                                                      00124688899999999995   899999999999999


Q ss_pred             ecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEE--ecccccceEEEEEcCCCCEEEEe
Q 013274          337 DVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLT--FRGHYEYVNCCCFSSQDQELYTG  414 (446)
Q Consensus       337 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--l~gH~~~v~~~~fSpd~~~lvtg  414 (446)
                      |+.+......                                          ...  ..+|...|++++|+||+++|+++
T Consensus       235 d~~~~~~~~~------------------------------------------~~~~~~~~~~~~v~~~~~s~~g~~las~  272 (297)
T 2pm7_B          235 TQDNEQGPWK------------------------------------------KTLLKEEKFPDVLWRASWSLSGNVLALS  272 (297)
T ss_dssp             EESSTTSCCE------------------------------------------EEESSSSCCSSCEEEEEECSSSCCEEEE
T ss_pred             EeCCCCCccc------------------------------------------eeeeecccCCCcEEEEEECCCCCEEEEE
Confidence            9875321000                                          001  13578899999999999999999


Q ss_pred             eCCCcEEEeCCC
Q 013274          415 GNDRQILVWCPS  426 (446)
Q Consensus       415 s~D~~v~vW~~~  426 (446)
                      +.|++|+||++.
T Consensus       273 ~~D~~v~lw~~~  284 (297)
T 2pm7_B          273 GGDNKVTLWKEN  284 (297)
T ss_dssp             ETTSCEEEEEEC
T ss_pred             cCCCcEEEEEEC
Confidence            999999999875

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=5.1e-37  Score=287.80  Aligned_cols=254  Identities=15%  Similarity=0.239  Sum_probs=207.2

Q ss_pred             cccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEe
Q 013274           98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCD  176 (446)
Q Consensus        98 ~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd  176 (446)
                      .+.+|...|.++.|+| ++++|+||+.|++|++||+.++..+..+.. ...+..+.+++.   ..+|++|+.|+.|++||
T Consensus         8 ~~~~h~~~V~~~~fsp-~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~s~s~d~~i~vwd   83 (304)
T 2ynn_A            8 TFSNRSDRVKGIDFHP-TEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR---KNWIIVGSDDFRIRVFN   83 (304)
T ss_dssp             EEEEECSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGG---GTEEEEEETTSEEEEEE
T ss_pred             eecCCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCC---CCEEEEECCCCEEEEEE
Confidence            3468999999999987 789999999999999999999998887764 345777888774   45899999999999999


Q ss_pred             CCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccC
Q 013274          177 IASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAG  256 (446)
Q Consensus       177 ~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (446)
                      +++++.+..+.+|.+.|.+++|+|+++. |+||+.|++|++||++++..+..                            
T Consensus        84 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~sgs~D~~v~lWd~~~~~~~~~----------------------------  134 (304)
T 2ynn_A           84 YNTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWENNWALEQ----------------------------  134 (304)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSSSE-EEEEETTSCEEEEEGGGTTEEEE----------------------------
T ss_pred             CCCCcEEEEEeCCCCcEEEEEEcCCCCE-EEEECCCCeEEEEECCCCcchhh----------------------------
Confidence            9999999999999999999999999885 78999999999999875422100                            


Q ss_pred             CCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEcc-CCCEEEEeecCCcEEE
Q 013274          257 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE-DGMYLLSAGSDSRIRL  335 (446)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~sgs~D~~i~l  335 (446)
                                                                     ...+|...|.+++|+| ++.+|+||+.|++|++
T Consensus       135 -----------------------------------------------~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~i  167 (304)
T 2ynn_A          135 -----------------------------------------------TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKV  167 (304)
T ss_dssp             -----------------------------------------------EECCCCSCEEEEEECTTCTTEEEEEETTSEEEE
T ss_pred             -----------------------------------------------hhcccCCcEEEEEECCCCCCEEEEEeCCCeEEE
Confidence                                                           1236778899999999 6789999999999999


Q ss_pred             EecCcCceeeeeeeEEEeecCCCeEEEEcC--CCcEEEEeC-CCceEEEEeecCceEEEecccccceEEEEEcCCCCEEE
Q 013274          336 WDVESGRNTLVNFETVRLQTSKPIQLATTQ--DPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELY  412 (446)
Q Consensus       336 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lv  412 (446)
                      ||+.+...... +  ...+......+.+.+  ++.++++++ ...+++||+.+++.+.++.+|...|++++|+|++++|+
T Consensus       168 wd~~~~~~~~~-~--~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~  244 (304)
T 2ynn_A          168 WSLGQSTPNFT-L--TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII  244 (304)
T ss_dssp             EETTCSSCSEE-E--ECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEE
T ss_pred             EECCCCCccce-e--ccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEE
Confidence            99987543221 1  111112233445554  555666654 46899999999999999999999999999999999999


Q ss_pred             EeeCCCcEEEeCCCCCCCCCcC
Q 013274          413 TGGNDRQILVWCPSRHISDGVD  434 (446)
Q Consensus       413 tgs~D~~v~vW~~~~~~~~~~~  434 (446)
                      |||.|++|+||++.+......+
T Consensus       245 s~s~Dg~i~iWd~~~~~~~~~~  266 (304)
T 2ynn_A          245 SGSEDGTLKIWNSSTYKVEKTL  266 (304)
T ss_dssp             EEETTSCEEEEETTTCCEEEEE
T ss_pred             EEcCCCeEEEEECCCCceeeec
Confidence            9999999999999876644333

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.8e-37  Score=300.98  Aligned_cols=293  Identities=15%  Similarity=0.213  Sum_probs=219.7

Q ss_pred             CCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEE
Q 013274           40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF  119 (446)
Q Consensus        40 ~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l  119 (446)
                      .+|++.|++|+|+|.++++|+||+.||+|+|||+.+......      .+..      ...+|...|.++.++| ++.+|
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~------~~~~------~~~~h~~~v~~~~~~~-~~~~l  126 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEV------YSSS------LTYDCSSTVTQITMIP-NFDAF  126 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCC------CSCS------EEEECSSCEEEEEECT-TSSEE
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcc------ccee------eeccCCCCEEEEEEeC-CCCEE
Confidence            789999999999974678999999999999999876221000      0000      1125889999999987 78899


Q ss_pred             EEEeCCCeEEEEECC---CCeeeEEEecCCceEEeeecc-------------CCCCceEEEEeeCCCcEEEEeCCCCcee
Q 013274          120 VTGSYDHYVKVWDTN---CTRVVMNFKMPGKVYRTAMSP-------------LAASHMLIAAGTEDVQVRLCDIASGAIS  183 (446)
Q Consensus       120 ~s~s~D~~i~iWd~~---~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~lasgs~d~~v~vwd~~~~~~~  183 (446)
                      ++|+.|++|++||++   +++.+...... .+..+.+.+             ...+..++++|+.|+.|++||+++++.+
T Consensus       127 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  205 (437)
T 3gre_A          127 AVSSKDGQIIVLKVNHYQQESEVKFLNCE-CIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERL  205 (437)
T ss_dssp             EEEETTSEEEEEEEEEEEETTEEEEEEEE-EEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEE
T ss_pred             EEEeCCCEEEEEEeccccCCceeeccccc-eeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeee
Confidence            999999999999994   55544433321 233333332             2234678999999999999999999999


Q ss_pred             eeeeC--CCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCc
Q 013274          184 QTLSG--HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSV  261 (446)
Q Consensus       184 ~~l~~--h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (446)
                      ..+.+  |.+.|.+++|+|++++ |++|+.||+|++||++++.++..+.                               
T Consensus       206 ~~~~~~~h~~~v~~~~~s~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~-------------------------------  253 (437)
T 3gre_A          206 QIIENSPRHGAVSSICIDEECCV-LILGTTRGIIDIWDIRFNVLIRSWS-------------------------------  253 (437)
T ss_dssp             EEEECCGGGCCEEEEEECTTSCE-EEEEETTSCEEEEETTTTEEEEEEB-------------------------------
T ss_pred             EEEccCCCCCceEEEEECCCCCE-EEEEcCCCeEEEEEcCCccEEEEEe-------------------------------
Confidence            99988  8999999999999875 7899999999999998765543321                               


Q ss_pred             CCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEE----ccCCCEEEEeecCCcEEEEe
Q 013274          262 KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKV----TEDGMYLLSAGSDSRIRLWD  337 (446)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~f----s~dg~~l~sgs~D~~i~lWd  337 (446)
                                                                  ..|..+|.+++|    +|++.+|++|+.|++|++||
T Consensus       254 --------------------------------------------~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd  289 (437)
T 3gre_A          254 --------------------------------------------FGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWN  289 (437)
T ss_dssp             --------------------------------------------CTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEE
T ss_pred             --------------------------------------------cCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEE
Confidence                                                        134456888855    45788999999999999999


Q ss_pred             cCcCceeeeeeeEE-------Ee----------------ecCCCeEEEEcCCCcEEEEeC-CCceEEEEeecCceEEEec
Q 013274          338 VESGRNTLVNFETV-------RL----------------QTSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFR  393 (446)
Q Consensus       338 ~~~~~~~~~~~~~~-------~~----------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~l~  393 (446)
                      +.+++.... +...       .+                +......+++. ++..+++++ +..+++||+.+++....+.
T Consensus       290 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  367 (437)
T 3gre_A          290 FVKGHCQYA-FINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVI  367 (437)
T ss_dssp             TTTTEEEEE-EESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEE
T ss_pred             cCCCcEEEE-EEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEe
Confidence            998753221 1100       00                11123446666 556666665 4689999999888777666


Q ss_pred             c-------------------------------------cccceEEEEEcCC--CCEEEEeeCCCcEEEeC
Q 013274          394 G-------------------------------------HYEYVNCCCFSSQ--DQELYTGGNDRQILVWC  424 (446)
Q Consensus       394 g-------------------------------------H~~~v~~~~fSpd--~~~lvtgs~D~~v~vW~  424 (446)
                      +                                     |.+.|++++|+++  +.+|+||+.||+|+||+
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          368 SPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             CC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             cccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            5                                     8999999999998  88999999999999995

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.6e-36  Score=292.93  Aligned_cols=300  Identities=13%  Similarity=0.109  Sum_probs=236.2

Q ss_pred             eeEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeec-
Q 013274           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV-  114 (446)
Q Consensus        36 ~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~-  114 (446)
                      ..++.+|.+.|++|+|+|   ++|++|+.||+|++||+++.....      ....+     ....+|...|.++.|+|. 
T Consensus         9 ~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~------~~~~~-----~~~~~h~~~v~~~~~~~~~   74 (397)
T 1sq9_A            9 ANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNEN------PKDKS-----YSHFVHKSGLHHVDVLQAI   74 (397)
T ss_dssp             EEESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCC------GGGGE-----EEEECCTTCEEEEEEEEEE
T ss_pred             hhhhhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCccccc------CCCcc-----eEEecCCCcEEEEEEeccc
Confidence            345789999999999985   689999999999999998754211      01111     122479999999999983 


Q ss_pred             --CC---cEEEEEeCCCeEEEEECCCCee-----eEEEecC------CceEEeeeccCC-CCceE-EEEeeCCCcEEEEe
Q 013274          115 --DT---GLFVTGSYDHYVKVWDTNCTRV-----VMNFKMP------GKVYRTAMSPLA-ASHML-IAAGTEDVQVRLCD  176 (446)
Q Consensus       115 --~~---~~l~s~s~D~~i~iWd~~~~~~-----~~~~~~~------~~~~~~~~~~~~-~~~~~-lasgs~d~~v~vwd  176 (446)
                        ++   .+|++++.|++|++||+.+++.     +..+...      +.+.++.+++.. ++..+ |++++.|+.|++||
T Consensus        75 ~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd  154 (397)
T 1sq9_A           75 ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWK  154 (397)
T ss_dssp             ETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEE
T ss_pred             ccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEe
Confidence              27   8999999999999999988775     5655543      678888888211 13456 99999999999999


Q ss_pred             CCC------Cceee-----ee-------eCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccC
Q 013274          177 IAS------GAISQ-----TL-------SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGR  238 (446)
Q Consensus       177 ~~~------~~~~~-----~l-------~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~  238 (446)
                      +++      +..+.     .+       ..|...|.+++|+|++  .|++++.||.|++||++++..+..+..       
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~-------  225 (397)
T 1sq9_A          155 FHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFES-------  225 (397)
T ss_dssp             EESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEEC-------
T ss_pred             CCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEEec-------
Confidence            998      66665     77       4489999999999998  578999999999999987654433210       


Q ss_pred             CCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCccccccccccc---ccCeEEE
Q 013274          239 RPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAH---YGAVTGL  315 (446)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~l  315 (446)
                                                                                        ..+|   ...|.++
T Consensus       226 ------------------------------------------------------------------~~~h~~~~~~i~~i  239 (397)
T 1sq9_A          226 ------------------------------------------------------------------QHSMINNSNSIRSV  239 (397)
T ss_dssp             ------------------------------------------------------------------CC---CCCCCEEEE
T ss_pred             ------------------------------------------------------------------cccccccCCccceE
Confidence                                                                              0125   6679999


Q ss_pred             EEccCCCEEEEeecC---CcEEEEecCcCceeeeeeeEEEe-------------ecCCCeEEEEcCCCcEEEEeCC-Cce
Q 013274          316 KVTEDGMYLLSAGSD---SRIRLWDVESGRNTLVNFETVRL-------------QTSKPIQLATTQDPAVVFVPCM-TAV  378 (446)
Q Consensus       316 ~fs~dg~~l~sgs~D---~~i~lWd~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~-~~~  378 (446)
                      +|+|++.+|++++.|   +.|++||+.+++...    .+..             +......+++++++..+++++. ..+
T Consensus       240 ~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  315 (397)
T 1sq9_A          240 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIG----SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKL  315 (397)
T ss_dssp             EECSSTTEEEEEEEETTEEEEEEEETTTCCEEE----EECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred             EECCCCCEEEEEecCCCCceEEEEECCCCcccc----eeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeE
Confidence            999999999999999   999999998875321    1111             3345567889999988888754 579


Q ss_pred             EEEEeecCceEEEec------cc---------------ccceEEEEEcCCC----------CEEEEeeCCCcEEEeCCCC
Q 013274          379 KAFDIWSGKTCLTFR------GH---------------YEYVNCCCFSSQD----------QELYTGGNDRQILVWCPSR  427 (446)
Q Consensus       379 ~~~d~~~~~~~~~l~------gH---------------~~~v~~~~fSpd~----------~~lvtgs~D~~v~vW~~~~  427 (446)
                      ++||+.+++.+..+.      +|               ...|++++|+||+          ++|++|+.|+.|++|++.+
T Consensus       316 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  395 (397)
T 1sq9_A          316 RFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG  395 (397)
T ss_dssp             EEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred             EEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence            999999999999999      88               9999999999998          7999999999999999865


Q ss_pred             C
Q 013274          428 H  428 (446)
Q Consensus       428 ~  428 (446)
                      +
T Consensus       396 g  396 (397)
T 1sq9_A          396 G  396 (397)
T ss_dssp             -
T ss_pred             C
Confidence            4

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=5.2e-36  Score=286.84  Aligned_cols=325  Identities=13%  Similarity=0.241  Sum_probs=236.5

Q ss_pred             eEeCCCccceeEEEeecC---CCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEee
Q 013274           37 EIVSPHKGSINSLQVDLT---EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYP  113 (446)
Q Consensus        37 ~~~~~H~~~v~~l~~s~~---~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~  113 (446)
                      .+..+|.+.|++|+|+|.   +...+++++.|+.|++||+.++...            ..........|...|.++.|+|
T Consensus        12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~------------~~~~~~~~~~~~~~v~~~~~~~   79 (366)
T 3k26_A           12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI------------RLLQSYVDADADENFYTCAWTY   79 (366)
T ss_dssp             EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE------------EEEEEEECSCTTCCEEEEEEEE
T ss_pred             EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE------------EeeeeccccCCCCcEEEEEecc
Confidence            356699999999999973   3456777777789999999865421            1111111234778899999988


Q ss_pred             cC---CcEEEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeee---
Q 013274          114 VD---TGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL---  186 (446)
Q Consensus       114 ~~---~~~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l---  186 (446)
                      ..   +.+|++|+.|++|++||+.+++.+..+. +.+.+..+.+++.  +..+|++++.|+.|++||+++++....+   
T Consensus        80 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  157 (366)
T 3k26_A           80 DSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR--DPNLLLSVSKDHALRLWNIQTDTLVAIFGGV  157 (366)
T ss_dssp             CTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS--CTTEEEEEETTSCEEEEETTTTEEEEEECST
T ss_pred             CCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC--CCCEEEEEeCCCeEEEEEeecCeEEEEeccc
Confidence            42   5699999999999999999999888777 5667888888873  2358999999999999999999888887   


Q ss_pred             eCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCc
Q 013274          187 SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAP  266 (446)
Q Consensus       187 ~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (446)
                      .+|...|.+++|+|+++. |++++.||.|++||++++.....+.....                ....            
T Consensus       158 ~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----------------~~~~------------  208 (366)
T 3k26_A          158 EGHRDEVLSADYDLLGEK-IMSCGMDHSLKLWRINSKRMMNAIKESYD----------------YNPN------------  208 (366)
T ss_dssp             TSCSSCEEEEEECTTSSE-EEEEETTSCEEEEESCSHHHHHHHHHHHT----------------CCGG------------
T ss_pred             ccccCceeEEEECCCCCE-EEEecCCCCEEEEECCCCccccccceeEE----------------ecCC------------
Confidence            789999999999999875 78999999999999987643322211000                0000            


Q ss_pred             cccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceee-
Q 013274          267 QKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTL-  345 (446)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~-  345 (446)
                            +.....         ....  ..   ........+|.+.|.+++|+  +.+|++++.|+.|++||+.+..... 
T Consensus       209 ------~~~~~~---------~~~~--~~---~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~  266 (366)
T 3k26_A          209 ------KTNRPF---------ISQK--IH---FPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDID  266 (366)
T ss_dssp             ------GCSSCC---------CCEE--EC---CCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGG
T ss_pred             ------CCcccc---------ccee--ec---cCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCcccccc
Confidence                  000000         0000  00   00001124588899999998  7799999999999999998764311 


Q ss_pred             ---------eeeeEEEeecCCCeEEEEcCC--CcEEEEeCC-CceEEEEeecCc----eEEEeccc--ccceEEEEEcCC
Q 013274          346 ---------VNFETVRLQTSKPIQLATTQD--PAVVFVPCM-TAVKAFDIWSGK----TCLTFRGH--YEYVNCCCFSSQ  407 (446)
Q Consensus       346 ---------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~d~~~~~----~~~~l~gH--~~~v~~~~fSpd  407 (446)
                               ........+......++++++  +..+++++. ..+++||+.+++    ....+.+|  ...|++++|+||
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  346 (366)
T 3k26_A          267 KIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRD  346 (366)
T ss_dssp             GCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTT
T ss_pred             ccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCC
Confidence                     111222223334555677777  888887765 679999998875    44588888  799999999999


Q ss_pred             CCEEEEeeCCCcEEEeCCC
Q 013274          408 DQELYTGGNDRQILVWCPS  426 (446)
Q Consensus       408 ~~~lvtgs~D~~v~vW~~~  426 (446)
                      +++|++|+.|+.|++|++.
T Consensus       347 ~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          347 SSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             SSEEEEEETTSEEEEEEC-
T ss_pred             CCeEEEEeCCCEEEEEEec
Confidence            9999999999999999975

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.4e-37  Score=291.74  Aligned_cols=259  Identities=19%  Similarity=0.335  Sum_probs=195.8

Q ss_pred             eeEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeec-
Q 013274           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV-  114 (446)
Q Consensus        36 ~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~-  114 (446)
                      +.++.+|.+.|++++|+| ++++|||||.|++|+|||++++...          .     ...+.+|...|.++.|+++ 
T Consensus         6 ~~~~~~H~~~V~~v~~s~-~g~~lasgs~D~~v~lwd~~~~~~~----------~-----~~~l~gH~~~V~~v~~~~~~   69 (316)
T 3bg1_A            6 NTVDTSHEDMIHDAQMDY-YGTRLATCSSDRSVKIFDVRNGGQI----------L-----IADLRGHEGPVWQVAWAHPM   69 (316)
T ss_dssp             --------CCEEEEEECG-GGCEEEEEETTTEEEEEEEETTEEE----------E-----EEEEECCSSCEEEEEECCGG
T ss_pred             eeecccccCeEEEeeEcC-CCCEEEEEeCCCeEEEEEecCCCcE----------E-----EEEEcCCCccEEEEEeCCCC
Confidence            345679999999999997 6789999999999999998754210          0     1123589999999999753 


Q ss_pred             CCcEEEEEeCCCeEEEEECCCCe--eeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCce---eeeeeC
Q 013274          115 DTGLFVTGSYDHYVKVWDTNCTR--VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI---SQTLSG  188 (446)
Q Consensus       115 ~~~~l~s~s~D~~i~iWd~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~---~~~l~~  188 (446)
                      ++.+|+|||.|++|++||+.++.  .+..+. +.+.+.+++++|... ..+|++|+.|+.|++||++++..   ...+.+
T Consensus        70 ~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~-g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~  148 (316)
T 3bg1_A           70 YGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDY-GLILACGSSDGAISLLTYTGEGQWEVKKINNA  148 (316)
T ss_dssp             GSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTT-CSCEEEECSSSCEEEEEECSSSCEEECCBTTS
T ss_pred             CCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCC-CcEEEEEcCCCCEEEEecCCCCCcceeeeecc
Confidence            57899999999999999998764  333333 445678888988532 35789999999999999987632   456778


Q ss_pred             CCCCeEEEEEecCC-----------------CeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeecc
Q 013274          189 HRDGIMTVEWSTSS-----------------EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISK  251 (446)
Q Consensus       189 h~~~v~sv~~s~~~-----------------~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (446)
                      |...|.+++|+|+.                 + .|++|+.|++|++||++.......+                      
T Consensus       149 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~~----------------------  205 (316)
T 3bg1_A          149 HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIK-RFASGGCDNLIKLWKEEEDGQWKEE----------------------  205 (316)
T ss_dssp             SSSCBCCCEECCCCCC------CCSCCCCCCC-BEECCBTTSBCCEEEECTTSCEEEE----------------------
T ss_pred             ccCCcceEEEccccCCccccccccccCccccc-eEEEecCCCeEEEEEeCCCCcccee----------------------
Confidence            99999999999973                 3 4799999999999998643211000                      


Q ss_pred             ccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCC----CEEEEe
Q 013274          252 SLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG----MYLLSA  327 (446)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg----~~l~sg  327 (446)
                                                                         ....+|.++|.+++|+|++    .+|+||
T Consensus       206 ---------------------------------------------------~~l~~h~~~V~~v~~sp~~~~~~~~las~  234 (316)
T 3bg1_A          206 ---------------------------------------------------QKLEAHSDWVRDVAWAPSIGLPTSTIASC  234 (316)
T ss_dssp             ---------------------------------------------------ECCBCCSSCEEEEECCCCSSCSCCEEEEE
T ss_pred             ---------------------------------------------------eecccCCCceEEEEecCCCCCCCceEEEE
Confidence                                                               0124688899999999987    889999


Q ss_pred             ecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCC
Q 013274          328 GSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQ  407 (446)
Q Consensus       328 s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd  407 (446)
                      +.|++|++||+.+.....                                         .....+.+|.+.|++++|+|+
T Consensus       235 s~D~~v~iw~~~~~~~~~-----------------------------------------~~~~~~~~~~~~v~~v~~sp~  273 (316)
T 3bg1_A          235 SQDGRVFIWTCDDASSNT-----------------------------------------WSPKLLHKFNDVVWHVSWSIT  273 (316)
T ss_dssp             ETTCEEEEEECSSTTCCC-----------------------------------------CBCCEEEECSSCEEEEEECTT
T ss_pred             cCCCeEEEEEccCccccc-----------------------------------------hhhhhhhcCCCcEEEEEEcCC
Confidence            999999999987531100                                         000123468899999999999


Q ss_pred             CCEEEEeeCCCcEEEeCCC
Q 013274          408 DQELYTGGNDRQILVWCPS  426 (446)
Q Consensus       408 ~~~lvtgs~D~~v~vW~~~  426 (446)
                      +++|++|+.|++|+||+..
T Consensus       274 g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          274 ANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             TCCEEEEESSSCEEEEEEC
T ss_pred             CCEEEEEcCCCeEEEEEEC
Confidence            9999999999999999875

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2.8e-36  Score=290.23  Aligned_cols=296  Identities=9%  Similarity=0.076  Sum_probs=212.3

Q ss_pred             cceeEEEeecCCCCEEEEeeCCC-------cEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC
Q 013274           44 GSINSLQVDLTEERYLLSGASDS-------SVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (446)
Q Consensus        44 ~~v~~l~~s~~~~~~l~s~s~Dg-------~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~  116 (446)
                      -+|++++|+| ++++||+||.|.       +|++|++.......       ...........+.+|...|.++.+.   +
T Consensus        15 ~PV~sv~fs~-dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~-------~~~~~~~~~~~l~~~~~~v~s~~~~---~   83 (365)
T 4h5i_A           15 YPAYGAKFLN-NDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTE-------KEQFHILSEFALEDNDDSPTAIDAS---K   83 (365)
T ss_dssp             SCEEEEEEEE-TTEEEEEEECCSSSSSCCEEEEEEEECTTSSSH-------HHHEEEEEEEECCTTSCCCCEEEEE---T
T ss_pred             CCEEEEEEeC-CCcEEEEECCCccccCCCCEEEEEEEcCCCcce-------eeeeeeeeEEEccCCCCceEEEEeC---C
Confidence            4799999997 689999998755       49999987653211       0011111112345777788776543   4


Q ss_pred             cEEEE-----------EeCCCeEEEEECCCCeeeEE----Eec------CCceEEeeeccCCCCceEEEEeeCCCcEEEE
Q 013274          117 GLFVT-----------GSYDHYVKVWDTNCTRVVMN----FKM------PGKVYRTAMSPLAASHMLIAAGTEDVQVRLC  175 (446)
Q Consensus       117 ~~l~s-----------~s~D~~i~iWd~~~~~~~~~----~~~------~~~~~~~~~~~~~~~~~~lasgs~d~~v~vw  175 (446)
                      +.+++           ++.|+++|+|++........    ...      ...+..++|+|++. ...+|+++.|+.|+||
T Consensus        84 ~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~-~la~as~~~d~~i~iw  162 (365)
T 4h5i_A           84 GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGT-VAAIASSKVPAIMRII  162 (365)
T ss_dssp             TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSS-CEEEEESCSSCEEEEE
T ss_pred             CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCC-EEEEEECCCCCEEEEe
Confidence            45554           45688899999765432211    111      12256678888643 1234566789999999


Q ss_pred             eCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeecccccc
Q 013274          176 DIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSA  255 (446)
Q Consensus       176 d~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (446)
                      |+++++++..+. |.+.|.+|+|+|++++ +++++. +.+++|+..++.+....                          
T Consensus       163 d~~~~~~~~~~~-~~~~V~~v~fspdg~~-l~s~s~-~~~~~~~~~~~~~~~~~--------------------------  213 (365)
T 4h5i_A          163 DPSDLTEKFEIE-TRGEVKDLHFSTDGKV-VAYITG-SSLEVISTVTGSCIARK--------------------------  213 (365)
T ss_dssp             ETTTTEEEEEEE-CSSCCCEEEECTTSSE-EEEECS-SCEEEEETTTCCEEEEE--------------------------
T ss_pred             ECCCCcEEEEeC-CCCceEEEEEccCCce-EEeccc-eeEEEEEeccCcceeee--------------------------
Confidence            999999888876 7788999999999985 678775 55677766554321110                          


Q ss_pred             CCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCC----
Q 013274          256 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS----  331 (446)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~----  331 (446)
                                                                      ...+|...|++++|+|+|+++++++.|+    
T Consensus       214 ------------------------------------------------~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~  245 (365)
T 4h5i_A          214 ------------------------------------------------TDFDKNWSLSKINFIADDTVLIAASLKKGKGI  245 (365)
T ss_dssp             ------------------------------------------------CCCCTTEEEEEEEEEETTEEEEEEEESSSCCE
T ss_pred             ------------------------------------------------ecCCCCCCEEEEEEcCCCCEEEEEecCCccee
Confidence                                                            0124666799999999999999999988    


Q ss_pred             cEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEE-ecccccceEEEEEcCCCC
Q 013274          332 RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLT-FRGHYEYVNCCCFSSQDQ  409 (446)
Q Consensus       332 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~-l~gH~~~v~~~~fSpd~~  409 (446)
                      .+++||+............+..+......++++|++.++++++. ..+++||+.+++.+.+ +.+|.+.|++|+|||||+
T Consensus       246 ~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~  325 (365)
T 4h5i_A          246 VLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDST  325 (365)
T ss_dssp             EEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSC
T ss_pred             EEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCC
Confidence            68899987764433222223333345567899999999998765 5899999999998887 489999999999999999


Q ss_pred             EEEEeeCCCcEEEeCCCCC
Q 013274          410 ELYTGGNDRQILVWCPSRH  428 (446)
Q Consensus       410 ~lvtgs~D~~v~vW~~~~~  428 (446)
                      +|||||.|++||||+++..
T Consensus       326 ~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          326 YVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEEEEETTSEEEEEECCTT
T ss_pred             EEEEEeCCCeEEEEEcCCC
Confidence            9999999999999998644

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.4e-37  Score=306.47  Aligned_cols=299  Identities=9%  Similarity=0.030  Sum_probs=208.2

Q ss_pred             eCCCccceeEEEeecC-----CCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEee
Q 013274           39 VSPHKGSINSLQVDLT-----EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYP  113 (446)
Q Consensus        39 ~~~H~~~v~~l~~s~~-----~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~  113 (446)
                      +.+|.+.|++|+|+|.     ++.+|||||.||+|+|||+.++...... ......+.     ....+|...|+++.|++
T Consensus       203 l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~-~~~~~~p~-----~~l~~h~~~v~sv~~s~  276 (524)
T 2j04_B          203 IVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHV-FKMCEKPS-----LTLSLADSLITTFDFLS  276 (524)
T ss_dssp             EEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSE-EECCCSCS-----EEECCTTTCEEEEEESS
T ss_pred             EEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccc-ceeecCce-----EEEEcCCCCEEEEEecC
Confidence            4578899999999985     2579999999999999999765321000 00000011     12358999999999986


Q ss_pred             cCCcEEEEEeCCCeEEEEECCCCe-eeEEEe-cCCceEEee--eccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCC
Q 013274          114 VDTGLFVTGSYDHYVKVWDTNCTR-VVMNFK-MPGKVYRTA--MSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGH  189 (446)
Q Consensus       114 ~~~~~l~s~s~D~~i~iWd~~~~~-~~~~~~-~~~~~~~~~--~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h  189 (446)
                       + .+|++|+.|++|++||+.++. +...+. +.+.+.+++  +.+..  ..+||+|+.|++|+|||+++++++..+.+|
T Consensus       277 -~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g--~~~laS~S~D~tvklWD~~~~~~~~~~~~~  352 (524)
T 2j04_B          277 -P-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFE--DTVVSTVAVDGYFYIFNPKDIATTKTTVSR  352 (524)
T ss_dssp             -S-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTS--CCEEEEEETTSEEEEECGGGHHHHCEEEEE
T ss_pred             -C-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCC--CeEEEEeccCCeEEEEECCCCCcccccccc
Confidence             3 489999999999999998763 333343 456677773  34321  158999999999999999998888888877


Q ss_pred             CC--CeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCcc
Q 013274          190 RD--GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQ  267 (446)
Q Consensus       190 ~~--~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (446)
                      ..  .|.+|+|+|+++. +++++.|++|++||++++.++..                                       
T Consensus       353 ~~~~~v~~v~fsp~~~~-l~s~~~d~tv~lwd~~~~~~~~~---------------------------------------  392 (524)
T 2j04_B          353 FRGSNLVPVVYCPQIYS-YIYSDGASSLRAVPSRAAFAVHP---------------------------------------  392 (524)
T ss_dssp             CSCCSCCCEEEETTTTE-EEEECSSSEEEEEETTCTTCCEE---------------------------------------
T ss_pred             cccCcccceEeCCCcCe-EEEeCCCCcEEEEECccccccee---------------------------------------
Confidence            64  5899999999885 78999999999999986543221                                       


Q ss_pred             ccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeee
Q 013274          268 KRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVN  347 (446)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~  347 (446)
                                                           ..+|.+.|++|+|+|+|.+|+||+.|++|++||+..+-  +..
T Consensus       393 -------------------------------------l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~--~~~  433 (524)
T 2j04_B          393 -------------------------------------LVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRL--LHG  433 (524)
T ss_dssp             -------------------------------------EEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSST--TTC
T ss_pred             -------------------------------------eecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhh--ccc
Confidence                                                 23688899999999999999999999999999986531  111


Q ss_pred             eeEE-EeecC-CCeEEEEcCCCcEEEEeCCCceEEEEee-cCceEEEecccccceEEEEEcCCC---CEEEEeeCCCcEE
Q 013274          348 FETV-RLQTS-KPIQLATTQDPAVVFVPCMTAVKAFDIW-SGKTCLTFRGHYEYVNCCCFSSQD---QELYTGGNDRQIL  421 (446)
Q Consensus       348 ~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~l~gH~~~v~~~~fSpd~---~~lvtgs~D~~v~  421 (446)
                      .... ..... ....++++|++.++...  +..++|+.. ++..+.++.+|...|++|+|||++   .+|++|+.||+||
T Consensus       434 ~~~~~~~~~~~~v~~v~~sp~g~~~~~~--~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vr  511 (524)
T 2j04_B          434 IKNSSATQKSLRLWKWDYSIKDDKYRID--SSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLT  511 (524)
T ss_dssp             C------CCCCEEEECBCCSSSCEEEEC--CCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEE
T ss_pred             cccCccceeeeEEEEeccCCCCCeEEcc--CCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEE
Confidence            0000 00000 12255677776644321  222233221 467788999999999999999996   4999999999999


Q ss_pred             EeCCCCC
Q 013274          422 VWCPSRH  428 (446)
Q Consensus       422 vW~~~~~  428 (446)
                      ||++...
T Consensus       512 lw~l~~~  518 (524)
T 2j04_B          512 LEYLSLE  518 (524)
T ss_dssp             EEECSCC
T ss_pred             EEEcccc
Confidence            9998754

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.3e-35  Score=283.28  Aligned_cols=298  Identities=12%  Similarity=0.142  Sum_probs=228.1

Q ss_pred             eEeCCCccceeEEEeecCCCCEEEEeeC---CCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEee
Q 013274           37 EIVSPHKGSINSLQVDLTEERYLLSGAS---DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYP  113 (446)
Q Consensus        37 ~~~~~H~~~v~~l~~s~~~~~~l~s~s~---Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~  113 (446)
                      .++.+|.+.|++|+|+|++..++++|+.   |++|+|||++++...          .      ....+|...|.++.|+|
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~----------~------~~~~~~~~~v~~~~~~~   75 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK----------L------LREIEKAKPIKCGTFGA   75 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEE----------E------EEEEEESSCEEEEECTT
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccc----------c------eeeecccCcEEEEEEcC
Confidence            4467899999999999865567778876   999999999865321          0      01136888999999988


Q ss_pred             cC--CcEEEEEeCCCeEEEEECCCCe-eeEEEe-cCCceEEeeecc---CCCCceEEEEeeCCCcEEEEeCCCCc-eeee
Q 013274          114 VD--TGLFVTGSYDHYVKVWDTNCTR-VVMNFK-MPGKVYRTAMSP---LAASHMLIAAGTEDVQVRLCDIASGA-ISQT  185 (446)
Q Consensus       114 ~~--~~~l~s~s~D~~i~iWd~~~~~-~~~~~~-~~~~~~~~~~~~---~~~~~~~lasgs~d~~v~vwd~~~~~-~~~~  185 (446)
                      ..  +.+|++|+.|++|++||+.+++ .+..+. +.+.+.++.+.+   +.++..+|++++.|+.|++||++++. ....
T Consensus        76 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~  155 (357)
T 3i2n_A           76 TSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVAN  155 (357)
T ss_dssp             CCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEE
T ss_pred             CCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCccee
Confidence            43  6899999999999999999887 666655 445577775542   33455689999999999999999987 6777


Q ss_pred             eeCCCC----CeEEEE----EecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCC
Q 013274          186 LSGHRD----GIMTVE----WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQ  257 (446)
Q Consensus       186 l~~h~~----~v~sv~----~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (446)
                      +..|.+    .+.++.    |+|+++. |++++.||.|++||++++.+..                              
T Consensus       156 ~~~~~~~~~~~v~~~~~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~------------------------------  204 (357)
T 3i2n_A          156 MEPVQGENKRDCWTVAFGNAYNQEERV-VCAGYDNGDIKLFDLRNMALRW------------------------------  204 (357)
T ss_dssp             ECCCTTSCCCCEEEEEEECCCC-CCCE-EEEEETTSEEEEEETTTTEEEE------------------------------
T ss_pred             ccccCCCCCCceEEEEEEeccCCCCCE-EEEEccCCeEEEEECccCceee------------------------------
Confidence            766655    899998    6778774 7899999999999998754211                              


Q ss_pred             CCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEcc---CCCEEEEeecCCcEE
Q 013274          258 NSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE---DGMYLLSAGSDSRIR  334 (446)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~---dg~~l~sgs~D~~i~  334 (446)
                                                                     ...|...|.+++|+|   ++.+|++|+.|+.|+
T Consensus       205 -----------------------------------------------~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~  237 (357)
T 3i2n_A          205 -----------------------------------------------ETNIKNGVCSLEFDRKDISMNKLVATSLEGKFH  237 (357)
T ss_dssp             -----------------------------------------------EEECSSCEEEEEESCSSSSCCEEEEEESTTEEE
T ss_pred             -----------------------------------------------ecCCCCceEEEEcCCCCCCCCEEEEECCCCeEE
Confidence                                                           123556799999999   999999999999999


Q ss_pred             EEecCcCceeee-eeeEEEeecCCCeEEEEcCCCc-EEEEeC-CCceEEEEeecC-------------------ceEEEe
Q 013274          335 LWDVESGRNTLV-NFETVRLQTSKPIQLATTQDPA-VVFVPC-MTAVKAFDIWSG-------------------KTCLTF  392 (446)
Q Consensus       335 lWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~d~~~~-------------------~~~~~l  392 (446)
                      +||+.+++.... .......+......++++|++. ++++++ ...+++||+.++                   +.+..+
T Consensus       238 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  317 (357)
T 3i2n_A          238 VFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV  317 (357)
T ss_dssp             EEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEE
T ss_pred             EEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecc
Confidence            999987543211 1111123344556788899877 566554 468999999754                   356789


Q ss_pred             cccccceEEEEEcCCCCEEE-EeeCCCcEEEeCCCCC
Q 013274          393 RGHYEYVNCCCFSSQDQELY-TGGNDRQILVWCPSRH  428 (446)
Q Consensus       393 ~gH~~~v~~~~fSpd~~~lv-tgs~D~~v~vW~~~~~  428 (446)
                      .+|.+.|++++|+|++++|+ ||+.|+.|+||++...
T Consensus       318 ~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~  354 (357)
T 3i2n_A          318 TLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL  354 (357)
T ss_dssp             ECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred             ccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence            99999999999999999998 8999999999998753

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.4e-35  Score=284.80  Aligned_cols=307  Identities=16%  Similarity=0.189  Sum_probs=230.3

Q ss_pred             EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (446)
Q Consensus        38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~  117 (446)
                      +++.|.+.|++++|+| ++++|++|+.|++|++||++++..          ..     .....+|...|.++.++| +++
T Consensus         3 ~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~v~i~~~~~~~~----------~~-----~~~~~~h~~~v~~~~~~~-~~~   65 (372)
T 1k8k_C            3 YHSFLVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKW----------VQ-----VHELKEHNGQVTGVDWAP-DSN   65 (372)
T ss_dssp             EEESCSSCCCEEEECT-TSSEEEEECSSSEEEEEEEETTEE----------EE-----EEEEECCSSCEEEEEEET-TTT
T ss_pred             eecccCCCeEEEEECC-CCCEEEEEeCCCEEEEEeCCCCcE----------Ee-----eeeecCCCCcccEEEEeC-CCC
Confidence            4567999999999997 678999999999999999876420          00     112347999999999987 788


Q ss_pred             EEEEEeCCCeEEEEECCCCeeeEEEe---cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCce---ee-eeeCCC
Q 013274          118 LFVTGSYDHYVKVWDTNCTRVVMNFK---MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI---SQ-TLSGHR  190 (446)
Q Consensus       118 ~l~s~s~D~~i~iWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~---~~-~l~~h~  190 (446)
                      +|++++.|++|++||+.+++....+.   +...+.++.+++.   ..+|++++.|+.|++||++.+..   .. ...+|.
T Consensus        66 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~  142 (372)
T 1k8k_C           66 RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPN---EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIR  142 (372)
T ss_dssp             EEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTT---SSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCC
T ss_pred             EEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCC---CCEEEEEeCCCEEEEEEecCCCcceeeeeeecccC
Confidence            99999999999999998887554443   4456788888874   35899999999999999998763   33 336789


Q ss_pred             CCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccc
Q 013274          191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRS  270 (446)
Q Consensus       191 ~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (446)
                      ..|.+++|+|+++. |++++.||.|++||++....-.       .    ..                 .  ..  .....
T Consensus       143 ~~i~~~~~~~~~~~-l~~~~~dg~i~~~d~~~~~~~~-------~----~~-----------------~--~~--~~~~~  189 (372)
T 1k8k_C          143 STVLSLDWHPNSVL-LAAGSCDFKCRIFSAYIKEVEE-------R----PA-----------------P--TP--WGSKM  189 (372)
T ss_dssp             SCEEEEEECTTSSE-EEEEETTSCEEEEECCCTTTSC-------C----CC-----------------C--BT--TBSCC
T ss_pred             CCeeEEEEcCCCCE-EEEEcCCCCEEEEEcccccccc-------c----cc-----------------c--cc--ccccc
Confidence            99999999999875 7899999999999986432100       0    00                 0  00  00000


Q ss_pred             cCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeE
Q 013274          271 ANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFET  350 (446)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~  350 (446)
                      .               .+           .......+|.+.|.+++|+|++.+|++++.|+.|++||+.+++...    .
T Consensus       190 ~---------------~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~----~  239 (372)
T 1k8k_C          190 P---------------FG-----------ELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVA----T  239 (372)
T ss_dssp             C---------------TT-----------CEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEE----E
T ss_pred             c---------------hh-----------hheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeE----E
Confidence            0               00           0001123678889999999999999999999999999999875321    2


Q ss_pred             EEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeec--Cc--------------------------------eE------E
Q 013274          351 VRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWS--GK--------------------------------TC------L  390 (446)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~--------------------------------~~------~  390 (446)
                      +..+......+++++++.+++++....+++|++.+  ++                                ..      .
T Consensus       240 ~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (372)
T 1k8k_C          240 LASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGA  319 (372)
T ss_dssp             EECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------C
T ss_pred             EccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccc
Confidence            22233355678889999988888778999999987  42                                00      2


Q ss_pred             Ee-cccccceEEEEEc-CCC---CEEEEeeCCCcEEEeCCCC
Q 013274          391 TF-RGHYEYVNCCCFS-SQD---QELYTGGNDRQILVWCPSR  427 (446)
Q Consensus       391 ~l-~gH~~~v~~~~fS-pd~---~~lvtgs~D~~v~vW~~~~  427 (446)
                      .+ .+|.+.|++++|+ +++   ++|+|||.|++|++|++..
T Consensus       320 ~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~  361 (372)
T 1k8k_C          320 GLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  361 (372)
T ss_dssp             CCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             cccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence            23 5999999999966 676   9999999999999998753

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=5e-35  Score=298.19  Aligned_cols=320  Identities=21%  Similarity=0.346  Sum_probs=236.4

Q ss_pred             EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (446)
Q Consensus        38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~  117 (446)
                      .+.+|.+.|.+++|+| ++++|++++.|++|++||.+...             +     ....+|...|.++.+.| ++.
T Consensus       216 ~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~i~~w~~~~~~-------------~-----~~~~~~~~~v~~v~~~~-d~~  275 (577)
T 2ymu_A          216 TLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQL-------------L-----QTLTGHSSSVNGVAFRP-DGQ  275 (577)
T ss_dssp             EEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCE-------------E-----EEECCCSSCEEEEEECT-TSS
T ss_pred             EEecCCCCEEEEEECC-CCCEEEEEeCCCEEEEEeCCCCE-------------E-----EEEecCCCCEEEEEEcC-CCC
Confidence            4568999999999997 67889999999999999964211             0     12357889999998886 788


Q ss_pred             EEEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEE
Q 013274          118 LFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTV  196 (446)
Q Consensus       118 ~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv  196 (446)
                      ++++++.|++|++||... +.+..+. +.+.+..+++++.   ..++++++.|+.|++||+... .+..+.+|...|.++
T Consensus       276 ~l~~~~~d~~i~~w~~~~-~~~~~~~~h~~~v~~~~~~~~---~~~l~t~~~d~~i~~w~~~~~-~~~~~~~~~~~v~~~  350 (577)
T 2ymu_A          276 TIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPD---GQTIASASDDKTVKLWNRNGQ-HLQTLTGHSSSVWGV  350 (577)
T ss_dssp             EEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTT---SSEEEEEETTSCEEEEETTSC-EEEEECCCSSCEEEE
T ss_pred             EEEEEeCCCEEEEEeCCC-cEEEEEecCCCCeEEEEECCC---CCEEEEEeCCCeEEEEeCCCC-eeEEEeCCCCCEEEE
Confidence            999999999999999764 4444443 4556788888874   458999999999999998654 556788999999999


Q ss_pred             EEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCce
Q 013274          197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGV  276 (446)
Q Consensus       197 ~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (446)
                      +|+|+++. +++++.|+.|++||. ++.++..+..+...+.        .                             +
T Consensus       351 ~~s~~g~~-l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~--------~-----------------------------~  391 (577)
T 2ymu_A          351 AFSPDGQT-IASASDDKTVKLWNR-NGQLLQTLTGHSSSVR--------G-----------------------------V  391 (577)
T ss_dssp             EECTTSSE-EEEEETTSEEEEEET-TCCEEEEEECCSSCEE--------E-----------------------------E
T ss_pred             EECCCCCE-EEEEeCCCEEEEEcC-CCCEEEEecCCCCCeE--------E-----------------------------E
Confidence            99999985 789999999999995 4455554433222110        0                             0


Q ss_pred             eecccceeecCCcccc--ccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEee
Q 013274          277 RQSSVGRIPAKGSVRQ--RLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQ  354 (446)
Q Consensus       277 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~  354 (446)
                      ..++.+...+.+..+.  .+............+|...|++++|+||+++|++++.|++|++||+... .    +..+..+
T Consensus       392 ~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~-~----~~~~~~~  466 (577)
T 2ymu_A          392 AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ-L----LQTLTGH  466 (577)
T ss_dssp             EECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSC-E----EEEEECC
T ss_pred             EECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCC-E----EEEEcCC
Confidence            0011111100000000  0000000111234578899999999999999999999999999997542 1    1222333


Q ss_pred             cCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCC
Q 013274          355 TSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR  427 (446)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~  427 (446)
                      ......++++|++.++++++. ..+++|+. +++.+..+.+|.+.|++|+||||+++|+|++.|++|+||+.+.
T Consensus       467 ~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~  539 (577)
T 2ymu_A          467 SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG  539 (577)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS
T ss_pred             CCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCC
Confidence            445567899999999888755 57999995 7888999999999999999999999999999999999999754

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.7e-35  Score=289.31  Aligned_cols=247  Identities=20%  Similarity=0.374  Sum_probs=207.9

Q ss_pred             ccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeC
Q 013274           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI  177 (446)
Q Consensus        99 ~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~  177 (446)
                      ..+|...|+++.|+| ++.+|+||+.|++|++||+.+++....+. +.+.+.++++++.   ..+|++|+.|+.|++||+
T Consensus       104 l~gh~~~V~~~~~~p-~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~---~~~l~sgs~D~~i~iwd~  179 (410)
T 1vyh_C          104 LSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS---GKLLASCSADMTIKLWDF  179 (410)
T ss_dssp             EECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTT---SSEEEEEETTSCCCEEET
T ss_pred             ecccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCC---CCEEEEEeCCCeEEEEeC
Confidence            458999999999987 78899999999999999999998887776 3456888888874   458999999999999999


Q ss_pred             CCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCC
Q 013274          178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQ  257 (446)
Q Consensus       178 ~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (446)
                      +++.++..+.+|...|.+++|+|+++. |+||+.|++|++||++++.++..+                            
T Consensus       180 ~~~~~~~~~~~h~~~V~~v~~~p~~~~-l~s~s~D~~i~~wd~~~~~~~~~~----------------------------  230 (410)
T 1vyh_C          180 QGFECIRTMHGHDHNVSSVSIMPNGDH-IVSASRDKTIKMWEVQTGYCVKTF----------------------------  230 (410)
T ss_dssp             TSSCEEECCCCCSSCEEEEEECSSSSE-EEEEETTSEEEEEETTTCCEEEEE----------------------------
T ss_pred             CCCceeEEEcCCCCCEEEEEEeCCCCE-EEEEeCCCeEEEEECCCCcEEEEE----------------------------
Confidence            999999999999999999999999885 789999999999999876654332                            


Q ss_pred             CCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEe
Q 013274          258 NSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWD  337 (446)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd  337 (446)
                                                                      .+|...|.++.|+|+|.+|++|+.|++|++||
T Consensus       231 ------------------------------------------------~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd  262 (410)
T 1vyh_C          231 ------------------------------------------------TGHREWVRMVRPNQDGTLIASCSNDQTVRVWV  262 (410)
T ss_dssp             ------------------------------------------------ECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ------------------------------------------------eCCCccEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence                                                            25667799999999999999999999999999


Q ss_pred             cCcCceeeeeeeEEEeecCCCeEEEEcCC--------------------CcEEEEeC-CCceEEEEeecCceEEEecccc
Q 013274          338 VESGRNTLVNFETVRLQTSKPIQLATTQD--------------------PAVVFVPC-MTAVKAFDIWSGKTCLTFRGHY  396 (446)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~-~~~~~~~d~~~~~~~~~l~gH~  396 (446)
                      +.+++...    .+..+......+++.|+                    +..+++++ +..+++||+.+++.+.++.+|.
T Consensus       263 ~~~~~~~~----~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~  338 (410)
T 1vyh_C          263 VATKECKA----ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD  338 (410)
T ss_dssp             TTTCCEEE----EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred             CCCCceee----EecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCC
Confidence            98865321    12222333445566664                    34566554 4679999999999999999999


Q ss_pred             cceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCCC
Q 013274          397 EYVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS  430 (446)
Q Consensus       397 ~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~~  430 (446)
                      +.|++++|+|++++|+||+.|++|+||+......
T Consensus       339 ~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~  372 (410)
T 1vyh_C          339 NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC  372 (410)
T ss_dssp             SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCC
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Confidence            9999999999999999999999999999976543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=8.9e-35  Score=275.04  Aligned_cols=284  Identities=18%  Similarity=0.269  Sum_probs=229.1

Q ss_pred             CCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEE
Q 013274           40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF  119 (446)
Q Consensus        40 ~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l  119 (446)
                      .+|.+.|++++|+| ++++|++++ ||+|++||+.++.....         +..   ....+|...|.++.++| ++++|
T Consensus        48 ~~h~~~v~~~~~~~-~~~~l~~~~-dg~i~iw~~~~~~~~~~---------~~~---~~~~~~~~~v~~~~~~~-~~~~l  112 (337)
T 1gxr_A           48 LNHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSP---------VSQ---LDCLNRDNYIRSCKLLP-DGCTL  112 (337)
T ss_dssp             ECCSSCCCEEEECS-SSSEEEEEC-BSEEEEEETTSTTCCSC---------SEE---EECSCTTSBEEEEEECT-TSSEE
T ss_pred             ccCCCceEEEEEec-CCcEEEEcC-CCeEEEEECCCCCceee---------eec---ccccCCCCcEEEEEEcC-CCCEE
Confidence            48999999999996 678999998 99999999986542210         000   01236888999999987 78899


Q ss_pred             EEEeCCCeEEEEECCCCe--eeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEE
Q 013274          120 VTGSYDHYVKVWDTNCTR--VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTV  196 (446)
Q Consensus       120 ~s~s~D~~i~iWd~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv  196 (446)
                      ++++.|++|++||+.+++  ....+. ....+..+.+++.   ..++++++.|+.|++||+++++....+.+|...|.++
T Consensus       113 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~  189 (337)
T 1gxr_A          113 IVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD---SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCI  189 (337)
T ss_dssp             EEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTT---SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             EEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCC---CCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEE
Confidence            999999999999999876  333333 3345778888874   4588999999999999999999999999999999999


Q ss_pred             EEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCce
Q 013274          197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGV  276 (446)
Q Consensus       197 ~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (446)
                      .|+|+++. |++++.||.|++||++++.....+                                               
T Consensus       190 ~~~~~~~~-l~~~~~dg~i~~~d~~~~~~~~~~-----------------------------------------------  221 (337)
T 1gxr_A          190 DISNDGTK-LWTGGLDNTVRSWDLREGRQLQQH-----------------------------------------------  221 (337)
T ss_dssp             EECTTSSE-EEEEETTSEEEEEETTTTEEEEEE-----------------------------------------------
T ss_pred             EECCCCCE-EEEEecCCcEEEEECCCCceEeee-----------------------------------------------
Confidence            99999875 789999999999999876433221                                               


Q ss_pred             eecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecC
Q 013274          277 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTS  356 (446)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~  356 (446)
                                                    .|...+.+++|+|++.+|++++.|+.|++||+.+++..     ....+..
T Consensus       222 ------------------------------~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-----~~~~~~~  266 (337)
T 1gxr_A          222 ------------------------------DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-----QLHLHES  266 (337)
T ss_dssp             ------------------------------ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-----EECCCSS
T ss_pred             ------------------------------cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-----EEcCCcc
Confidence                                          23456899999999999999999999999999876431     1222344


Q ss_pred             CCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCC
Q 013274          357 KPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP  425 (446)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~  425 (446)
                      ....+++++++..+++++. ..+++|++.+++.... ..|...|++++|+||+++|++++.|+.|++|++
T Consensus       267 ~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          267 CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             ceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE-ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence            5667889999888877654 6799999998887744 568999999999999999999999999999975

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.5e-35  Score=279.98  Aligned_cols=246  Identities=22%  Similarity=0.346  Sum_probs=204.1

Q ss_pred             cCccccEeEEEEeec---CCcEEEEEeCCCeEEEEECCCCeeeEEEecC---CceEEeeeccCCCCceEEEEeeCCCcEE
Q 013274          100 HGHKYAISSAIWYPV---DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP---GKVYRTAMSPLAASHMLIAAGTEDVQVR  173 (446)
Q Consensus       100 ~gh~~~V~~~~~~~~---~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~lasgs~d~~v~  173 (446)
                      .+|...|+++.|.+.   ++.+|+|||.|++|++||+..+.......+.   ..+.++.+++.   ..++++++.|+.|+
T Consensus        29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~---~~~l~s~s~D~~i~  105 (321)
T 3ow8_A           29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHT---LPIAASSSLDAHIR  105 (321)
T ss_dssp             TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSS---SSEEEEEETTSEEE
T ss_pred             ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCC---CCEEEEEeCCCcEE
Confidence            589999999999863   4679999999999999999877654444333   44677777764   45899999999999


Q ss_pred             EEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeecccc
Q 013274          174 LCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSL  253 (446)
Q Consensus       174 vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (446)
                      +||+++++.+..+..|...+.+++|+|++++ |++++.||.|++||++++.....+                        
T Consensus       106 lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~-l~~g~~dg~v~i~~~~~~~~~~~~------------------------  160 (321)
T 3ow8_A          106 LWDLENGKQIKSIDAGPVDAWTLAFSPDSQY-LATGTHVGKVNIFGVESGKKEYSL------------------------  160 (321)
T ss_dssp             EEETTTTEEEEEEECCTTCCCCEEECTTSSE-EEEECTTSEEEEEETTTCSEEEEE------------------------
T ss_pred             EEECCCCCEEEEEeCCCccEEEEEECCCCCE-EEEEcCCCcEEEEEcCCCceeEEe------------------------
Confidence            9999999999999999999999999999985 789999999999999865432211                        


Q ss_pred             ccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcE
Q 013274          254 SAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRI  333 (446)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i  333 (446)
                                                                          ..|...|.+++|+|+|++|++|+.|+.|
T Consensus       161 ----------------------------------------------------~~~~~~v~~~~~spdg~~lasg~~dg~i  188 (321)
T 3ow8_A          161 ----------------------------------------------------DTRGKFILSIAYSPDGKYLASGAIDGII  188 (321)
T ss_dssp             ----------------------------------------------------ECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ----------------------------------------------------cCCCceEEEEEECCCCCEEEEEcCCCeE
Confidence                                                                1344568999999999999999999999


Q ss_pred             EEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCCEEE
Q 013274          334 RLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELY  412 (446)
Q Consensus       334 ~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lv  412 (446)
                      ++||+.+++..    ..+..+......++++|++.++++++. ..+++||+.+++...++.+|...|++++|+||+++|+
T Consensus       189 ~iwd~~~~~~~----~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~  264 (321)
T 3ow8_A          189 NIFDIATGKLL----HTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFV  264 (321)
T ss_dssp             EEEETTTTEEE----EEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             EEEECCCCcEE----EEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEE
Confidence            99999987532    222233445667899999998888765 5799999999999999999999999999999999999


Q ss_pred             EeeCCCcEEEeCCCCCC
Q 013274          413 TGGNDRQILVWCPSRHI  429 (446)
Q Consensus       413 tgs~D~~v~vW~~~~~~  429 (446)
                      ||+.|++|+||++.+..
T Consensus       265 s~s~D~~v~iwd~~~~~  281 (321)
T 3ow8_A          265 SSSSDKSVKVWDVGTRT  281 (321)
T ss_dssp             EEETTSCEEEEETTTTE
T ss_pred             EEeCCCcEEEEeCCCCE
Confidence            99999999999998654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.5e-36  Score=292.75  Aligned_cols=309  Identities=14%  Similarity=0.165  Sum_probs=217.6

Q ss_pred             eEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC
Q 013274           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (446)
Q Consensus        37 ~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~  116 (446)
                      +++..|.+.|++++|+| ++++|++|+.|++|+|||+.++...               ......+|...|.++.|+| ++
T Consensus         5 ~~~~~~~~~v~~~~~s~-~g~~l~~~~~d~~i~iw~~~~~~~~---------------~~~~~~~h~~~v~~~~~s~-~~   67 (377)
T 3dwl_C            5 QVLHILPKPSYEHAFNS-QRTEFVTTTATNQVELYEQDGNGWK---------------HARTFSDHDKIVTCVDWAP-KS   67 (377)
T ss_dssp             EEEEECSSCCSCCEECS-SSSEEECCCSSSCBCEEEEETTEEE---------------ECCCBCCCSSCEEEEEECT-TT
T ss_pred             eeEecCCCcEEEEEECC-CCCEEEEecCCCEEEEEEccCCceE---------------EEEEEecCCceEEEEEEeC-CC
Confidence            34556778999999997 6889999999999999999764200               0123458999999999987 68


Q ss_pred             cEEEEEeCCCeEEEEECCCCe---eeEE-EecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc---eeeeeeC-
Q 013274          117 GLFVTGSYDHYVKVWDTNCTR---VVMN-FKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA---ISQTLSG-  188 (446)
Q Consensus       117 ~~l~s~s~D~~i~iWd~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~---~~~~l~~-  188 (446)
                      ++|++++.|++|++||+.++.   .... ..+.+.+.++.+++.   ..+|++++.|+.|++||++++.   ....+.+ 
T Consensus        68 ~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  144 (377)
T 3dwl_C           68 NRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPN---EDKFAVGSGARVISVCYFEQENDWWVSKHLKRP  144 (377)
T ss_dssp             CCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTT---SSCCEEEESSSCEEECCC-----CCCCEEECSS
T ss_pred             CEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCC---CCEEEEEecCCeEEEEEECCcccceeeeEeecc
Confidence            899999999999999998876   3332 234566888888874   3578999999999999999887   4677887 


Q ss_pred             CCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccc
Q 013274          189 HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQK  268 (446)
Q Consensus       189 h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (446)
                      |...|.+++|+|++++ |++++.|++|++||++.........          +                    .      
T Consensus       145 h~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~----------~--------------------~------  187 (377)
T 3dwl_C          145 LRSTILSLDWHPNNVL-LAAGCADRKAYVLSAYVRDVDAKPE----------A--------------------S------  187 (377)
T ss_dssp             CCSCEEEEEECTTSSE-EEEEESSSCEEEEEECCSSCC-CCC----------S--------------------C------
T ss_pred             cCCCeEEEEEcCCCCE-EEEEeCCCEEEEEEEEecccCCCcc----------c--------------------c------
Confidence            9999999999999875 7899999999999987542100000          0                    0      


Q ss_pred             cccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeee
Q 013274          269 RSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNF  348 (446)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~  348 (446)
                        ..+...   +.+                 ...... +|.+.|.+++|+|+|++|++++.|++|++||+.+++.....+
T Consensus       188 --~~~~~~---~~~-----------------~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  244 (377)
T 3dwl_C          188 --VWGSRL---PFN-----------------TVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRAL  244 (377)
T ss_dssp             --SSCSCC---CEE-----------------EEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEEC
T ss_pred             --cccccc---chh-----------------hhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceee
Confidence              000000   000                 000112 688899999999999999999999999999999876422112


Q ss_pred             eEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCc------e------------------------E------EEe
Q 013274          349 ETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGK------T------------------------C------LTF  392 (446)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~------------------------~------~~l  392 (446)
                      ..+..+......+++++++.+++++..+.+.+|+.....      .                        +      ..|
T Consensus       245 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (377)
T 3dwl_C          245 ITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTF  324 (377)
T ss_dssp             CCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------
T ss_pred             EeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCCCceEEEeeecccccccccccccccccccccccccccccccccc
Confidence            233333445667889999999988888888888765211      0                        0      111


Q ss_pred             ----------------cccccceEEEEEcCCC-C---EEEEeeCCCcEEEeCC
Q 013274          393 ----------------RGHYEYVNCCCFSSQD-Q---ELYTGGNDRQILVWCP  425 (446)
Q Consensus       393 ----------------~gH~~~v~~~~fSpd~-~---~lvtgs~D~~v~vW~~  425 (446)
                                      .+|.+.|+++++.++. .   .|+|||.|+.|+||++
T Consensus       325 ~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          325 RNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             ------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             cchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                            2399999999976654 3   6999999999999985

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=4.4e-35  Score=277.67  Aligned_cols=300  Identities=15%  Similarity=0.224  Sum_probs=213.0

Q ss_pred             eeEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeec-
Q 013274           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV-  114 (446)
Q Consensus        36 ~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~-  114 (446)
                      ..++.+|++.|++|+|+| ++++|++|+.||+|+|||+.++...        ...     .....+|...|.++.|+|. 
T Consensus         4 ~~~~~gH~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~--------~~~-----~~~~~~~~~~v~~~~~~~~~   69 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDF-YGRHVATCSSDQHIKVFKLDKDTSN--------WEL-----SDSWRAHDSSIVAIDWASPE   69 (351)
T ss_dssp             CCEECCCSSCEEEEEECS-SSSEEEEEETTSEEEEEEECSSSCC--------EEE-----EEEEECCSSCEEEEEECCGG
T ss_pred             cccCcccccceeEEEEcC-CCCEEEEeeCCCeEEEEECCCCCCc--------cee-----cceeccCCCcEEEEEEcCCC
Confidence            456789999999999997 6789999999999999999764321        000     1123579999999999886 


Q ss_pred             CCcEEEEEeCCCeEEEEECCCC---------eeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceee
Q 013274          115 DTGLFVTGSYDHYVKVWDTNCT---------RVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ  184 (446)
Q Consensus       115 ~~~~l~s~s~D~~i~iWd~~~~---------~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~  184 (446)
                      ++.+|++++.|++|++||+.++         +.+..+. +.+.+..+.+.+... ..++++++.|+.|++||+++++.+.
T Consensus        70 d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~  148 (351)
T 3f3f_A           70 YGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHL-GLKLACLGNDGILRLYDALEPSDLR  148 (351)
T ss_dssp             GCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGG-CSEEEEEETTCEEEEEECSSTTCTT
T ss_pred             CCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCC-CcEEEEecCCCcEEEecCCChHHhc
Confidence            5889999999999999999876         3344443 456688888887521 4589999999999999999887554


Q ss_pred             eee-------------CCCCCeEEEEEecC---CCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCccccccee
Q 013274          185 TLS-------------GHRDGIMTVEWSTS---SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVS  248 (446)
Q Consensus       185 ~l~-------------~h~~~v~sv~~s~~---~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (446)
                      .+.             +|...+.++.|+|+   +. .+++++.|+.+.+|+...+.....                    
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~--------------------  207 (351)
T 3f3f_A          149 SWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPE-KLAVSALEQAIIYQRGKDGKLHVA--------------------  207 (351)
T ss_dssp             CCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCC-EEEEEETTEEEEEEECTTSCEEEE--------------------
T ss_pred             cccccccccccccccCCcccceeEEEeccCCCCCc-EEEEecCCCcEEEEccCCCceeee--------------------
Confidence            433             68899999999997   55 578999999998887654321000                    


Q ss_pred             eccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCC----CEE
Q 013274          249 ISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG----MYL  324 (446)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg----~~l  324 (446)
                                                                            ....+|.+.|++++|+|++    .+|
T Consensus       208 ------------------------------------------------------~~~~~h~~~i~~~~~~p~~~~~~~~l  233 (351)
T 3f3f_A          208 ------------------------------------------------------AKLPGHKSLIRSISWAPSIGRWYQLI  233 (351)
T ss_dssp             ------------------------------------------------------EECCCCCSCEEEEEECCCSSCSSEEE
T ss_pred             ------------------------------------------------------eecCCCCcceeEEEECCCCCCcceEE
Confidence                                                                  0123577889999999998    899


Q ss_pred             EEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeC-----CCceEEEEeecCceEEEecccccce
Q 013274          325 LSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC-----MTAVKAFDIWSGKTCLTFRGHYEYV  399 (446)
Q Consensus       325 ~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~d~~~~~~~~~l~gH~~~v  399 (446)
                      ++|+.|++|++||+.++.........    ..........+.........     .....+|+..+.+.+..+.+|.+.|
T Consensus       234 ~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  309 (351)
T 3f3f_A          234 ATGCKDGRIRIFKITEKLSPLASEES----LTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEV  309 (351)
T ss_dssp             EEEETTSCEEEEEEEECC-------------------------------------------CCSEEEEEEEEECTTSSCE
T ss_pred             EEEcCCCeEEEEeCCCCcCccccCCc----ccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccE
Confidence            99999999999999875432211100    00011111111111111111     1123445555667788999999999


Q ss_pred             EEEEEcCCCCEEEEeeCCCcEEEeCCCCCC
Q 013274          400 NCCCFSSQDQELYTGGNDRQILVWCPSRHI  429 (446)
Q Consensus       400 ~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~  429 (446)
                      ++++|+|++++|+||+.|+.|+||+++...
T Consensus       310 ~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  339 (351)
T 3f3f_A          310 WSVSWNLTGTILSSAGDDGKVRLWKATYSN  339 (351)
T ss_dssp             EEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred             EEEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence            999999999999999999999999998654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.4e-35  Score=284.42  Aligned_cols=280  Identities=13%  Similarity=0.201  Sum_probs=228.4

Q ss_pred             CccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEE
Q 013274           42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT  121 (446)
Q Consensus        42 H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s  121 (446)
                      |.+.|++++|+| ++++|++|+.||.|++||.+ +..            +     ....+|...|.++.++| ++.+|++
T Consensus       107 ~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~~~~-~~~------------~-----~~~~~~~~~v~~~~~~~-~~~~l~~  166 (425)
T 1r5m_A          107 TTNQVTCLAWSH-DGNSIVTGVENGELRLWNKT-GAL------------L-----NVLNFHRAPIVSVKWNK-DGTHIIS  166 (425)
T ss_dssp             -CBCEEEEEECT-TSSEEEEEETTSCEEEEETT-SCE------------E-----EEECCCCSCEEEEEECT-TSSEEEE
T ss_pred             CCCceEEEEEcC-CCCEEEEEeCCCeEEEEeCC-CCe------------e-----eeccCCCccEEEEEECC-CCCEEEE
Confidence            788999999997 68899999999999999932 211            1     12247889999999987 7889999


Q ss_pred             EeCCCeEEEEECCCCeeeEEEecCCc----------------eEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeee
Q 013274          122 GSYDHYVKVWDTNCTRVVMNFKMPGK----------------VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT  185 (446)
Q Consensus       122 ~s~D~~i~iWd~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~  185 (446)
                      ++.|+.|++||+.+++.+..+.....                +..+.+.+.    ..+++++.|+.|++||++++.....
T Consensus       167 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~i~~~d~~~~~~~~~  242 (425)
T 1r5m_A          167 MDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD----DKFVIPGPKGAIFVYQITEKTPTGK  242 (425)
T ss_dssp             EETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEET----TEEEEECGGGCEEEEETTCSSCSEE
T ss_pred             EecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCC----CEEEEEcCCCeEEEEEcCCCceeee
Confidence            99999999999999988877764432                444555542    3578889999999999999999999


Q ss_pred             eeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCC
Q 013274          186 LSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRA  265 (446)
Q Consensus       186 l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (446)
                      +.+|...|.+++|+|+++. |++++.|+.|++||++++.+...                                     
T Consensus       243 ~~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~-------------------------------------  284 (425)
T 1r5m_A          243 LIGHHGPISVLEFNDTNKL-LLSASDDGTLRIWHGGNGNSQNC-------------------------------------  284 (425)
T ss_dssp             ECCCSSCEEEEEEETTTTE-EEEEETTSCEEEECSSSBSCSEE-------------------------------------
T ss_pred             eccCCCceEEEEECCCCCE-EEEEcCCCEEEEEECCCCccceE-------------------------------------
Confidence            9999999999999999885 78999999999999876432211                                     


Q ss_pred             ccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceee
Q 013274          266 PQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTL  345 (446)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~  345 (446)
                                                             ..+|...|.+++|+|++ +|++++.|+.|++||+.+++.. 
T Consensus       285 ---------------------------------------~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~-  323 (425)
T 1r5m_A          285 ---------------------------------------FYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLL-  323 (425)
T ss_dssp             ---------------------------------------ECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEE-
T ss_pred             ---------------------------------------ecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEe-
Confidence                                                   12466779999999999 9999999999999999886532 


Q ss_pred             eeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCc--------------------eEEEeccccc--ceEEE
Q 013274          346 VNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGK--------------------TCLTFRGHYE--YVNCC  402 (446)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~--------------------~~~~l~gH~~--~v~~~  402 (446)
                         .....+......+++++++..+++++. ..+++|++.+++                    .+..+.+|..  .|+++
T Consensus       324 ---~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  400 (425)
T 1r5m_A          324 ---ALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDL  400 (425)
T ss_dssp             ---EEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEE
T ss_pred             ---EecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEE
Confidence               122223345567889999988887764 589999998888                    8899999977  99999


Q ss_pred             EEcCCCCEEEEeeCCCcEEEeCCCC
Q 013274          403 CFSSQDQELYTGGNDRQILVWCPSR  427 (446)
Q Consensus       403 ~fSpd~~~lvtgs~D~~v~vW~~~~  427 (446)
                      +|+||+++|++|+.|+.|++|++++
T Consensus       401 ~~s~~~~~l~~~~~dg~i~iw~~~g  425 (425)
T 1r5m_A          401 SWNCAGNKISVAYSLQEGSVVAIPG  425 (425)
T ss_dssp             EECTTSSEEEEEESSSCCEEEECCC
T ss_pred             EccCCCceEEEEecCceEEEEeecC
Confidence            9999999999999999999999863

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=4.7e-34  Score=268.12  Aligned_cols=281  Identities=17%  Similarity=0.238  Sum_probs=216.5

Q ss_pred             ceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeC
Q 013274           45 SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY  124 (446)
Q Consensus        45 ~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~  124 (446)
                      ..++|+||+ + ++|++| .|++|+|||+++++...            .   ....+|...|.++.++| ++++|+||+.
T Consensus        27 y~~~l~WS~-~-~~lAvg-~D~tV~iWd~~tg~~~~------------~---~~~~~~~~~V~~v~~~~-~~~~l~sgs~   87 (318)
T 4ggc_A           27 YLNLVDWSS-G-NVLAVA-LDNSVYLWSASSGDILQ------------L---LQMEQPGEYISSVAWIK-EGNYLAVGTS   87 (318)
T ss_dssp             TCBCEEECT-T-SEEEEE-ETTEEEEEETTTCCEEE------------E---EECCSTTCCEEEEEECT-TSSEEEEEET
T ss_pred             cceEEEECC-C-CEEEEE-eCCEEEEEECCCCCEEE------------E---EEecCCCCeEEEEEECC-CCCEEEEEEC
Confidence            368899986 3 466655 69999999998765310            1   12357888999999987 7889999999


Q ss_pred             CCeEEEEECCCCeeeEEEecCC-ceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC-ceeeeeeCCCCCeEEEEEecCC
Q 013274          125 DHYVKVWDTNCTRVVMNFKMPG-KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AISQTLSGHRDGIMTVEWSTSS  202 (446)
Q Consensus       125 D~~i~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~-~~~~~l~~h~~~v~sv~~s~~~  202 (446)
                      |++|++||+++++++..+..+. .+.....     ...++++++.++.+++|+...+ ..+..+.+|...+..+.+++++
T Consensus        88 Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~-----~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (318)
T 4ggc_A           88 SAEVQLWDVQQQKRLRNMTSHSARVGSLSW-----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG  162 (318)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEEEEE-----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS
T ss_pred             CCcEEEeecCCceeEEEecCccceEEEeec-----CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCC
Confidence            9999999999999988776433 2333222     2347999999999999999876 4567889999999999999998


Q ss_pred             CeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccc
Q 013274          203 EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVG  282 (446)
Q Consensus       203 ~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (446)
                      +. |++++.|++|++||+++++.....                                                     
T Consensus       163 ~~-l~s~~~d~~i~iwd~~~~~~~~~~-----------------------------------------------------  188 (318)
T 4ggc_A          163 RH-LASGGNDNLVNVWPSAPGEGGWVP-----------------------------------------------------  188 (318)
T ss_dssp             SE-EEEEETTSCEEEEESSCBTTBSCC-----------------------------------------------------
T ss_pred             CE-EEEEecCcceeEEECCCCcccccc-----------------------------------------------------
Confidence            85 789999999999999764310000                                                     


Q ss_pred             eeecCCccccccCCCcccccccccccccCeEEEEEccCCCE---EEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCe
Q 013274          283 RIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMY---LLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPI  359 (446)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~---l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~  359 (446)
                                         ......|.+.|.++.++|++..   +++++.|++|++||.........     ........
T Consensus       189 -------------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~-----~~~~~~v~  244 (318)
T 4ggc_A          189 -------------------LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA-----VDAHSQVC  244 (318)
T ss_dssp             -------------------SEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE-----EECSSCEE
T ss_pred             -------------------eeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc-----ccceeeee
Confidence                               0011245667999999998753   35778899999999987643211     11233445


Q ss_pred             EEEEcCCCcEEEEeC---CCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCC
Q 013274          360 QLATTQDPAVVFVPC---MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR  427 (446)
Q Consensus       360 ~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~  427 (446)
                      .+.+.++...+++++   ...+++||+.+++.+.+|.+|.+.|++|+||||+++|+|||.|++|+||++..
T Consensus       245 ~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          245 SILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE  315 (318)
T ss_dssp             EEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             eeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence            667778777766543   35799999999999999999999999999999999999999999999999853

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=4.1e-34  Score=280.42  Aligned_cols=281  Identities=18%  Similarity=0.260  Sum_probs=219.1

Q ss_pred             ceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeC
Q 013274           45 SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY  124 (446)
Q Consensus        45 ~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~  124 (446)
                      ..+.|+||+  +++|+.| .|++|+|||+.++....            .   ....+|...|+++.|+| ++.+||+|+.
T Consensus       107 y~~~l~wS~--~n~lAvg-ld~tV~lWd~~tg~~~~------------~---~~~~~~~~~V~sv~fsp-dg~~lasgs~  167 (420)
T 4gga_A          107 YLNLVDWSS--GNVLAVA-LDNSVYLWSASSGDILQ------------L---LQMEQPGEYISSVAWIK-EGNYLAVGTS  167 (420)
T ss_dssp             TCBCEEECT--TSEEEEE-ETTEEEEEETTTCCEEE------------E---EECCSTTCCEEEEEECT-TSSEEEEEET
T ss_pred             cceeEEECC--CCEEEEE-eCCEEEEEECCCCCEEE------------E---EEecCCCCcEEEEEECC-CCCEEEEEEC
Confidence            467899985  3567665 59999999998764310            1   12357888999999987 8899999999


Q ss_pred             CCeEEEEECCCCeeeEEEecC-CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC-ceeeeeeCCCCCeEEEEEecCC
Q 013274          125 DHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AISQTLSGHRDGIMTVEWSTSS  202 (446)
Q Consensus       125 D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~-~~~~~l~~h~~~v~sv~~s~~~  202 (446)
                      |++|++||+.+++++..+..+ ..+.++++     +..++++|+.|+.+++||.... ..+..+.+|...+..+.++|++
T Consensus       168 Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~-----~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g  242 (420)
T 4gga_A          168 SAEVQLWDVQQQKRLRNMTSHSARVGSLSW-----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG  242 (420)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEE-----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS
T ss_pred             CCeEEEEEcCCCcEEEEEeCCCCceEEEee-----CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCC
Confidence            999999999999988877643 33444443     2358999999999999999875 4567889999999999999999


Q ss_pred             CeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccc
Q 013274          203 EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVG  282 (446)
Q Consensus       203 ~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (446)
                      +. +++++.|+.|++||++.+.....                                                      
T Consensus       243 ~~-l~s~~~D~~v~i~~~~~~~~~~~------------------------------------------------------  267 (420)
T 4gga_A          243 RH-LASGGNDNLVNVWPSAPGEGGWV------------------------------------------------------  267 (420)
T ss_dssp             SE-EEEEETTSCEEEEESSCCSSCSC------------------------------------------------------
T ss_pred             Ce-eeeeeccccceEEeeccccccce------------------------------------------------------
Confidence            85 78999999999999875421000                                                      


Q ss_pred             eeecCCccccccCCCcccccccccccccCeEEEEEccCCC-EEEE--eecCCcEEEEecCcCceeeeeeeEEEeecCCCe
Q 013274          283 RIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM-YLLS--AGSDSRIRLWDVESGRNTLVNFETVRLQTSKPI  359 (446)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~s--gs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~  359 (446)
                                        .......|.+.|.+++|+|++. .+++  |+.|++|++||+.+++...    .. .......
T Consensus       268 ------------------~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~----~~-~~~~~v~  324 (420)
T 4gga_A          268 ------------------PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS----AV-DAHSQVC  324 (420)
T ss_dssp             ------------------CSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEE----EE-ECSSCEE
T ss_pred             ------------------eeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccce----ee-cccccee
Confidence                              0001235677899999999765 4444  5689999999999875421    11 1233456


Q ss_pred             EEEEcCCCcEEEEeC---CCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCC
Q 013274          360 QLATTQDPAVVFVPC---MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR  427 (446)
Q Consensus       360 ~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~  427 (446)
                      .+.+.++...+++++   ...+++||+.+++.+.+|.||.+.|++|+|||||++|||||.|++|+||++..
T Consensus       325 ~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~  395 (420)
T 4gga_A          325 SILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE  395 (420)
T ss_dssp             EEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             eeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence            677888887776653   35799999999999999999999999999999999999999999999999854

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1e-34  Score=321.52  Aligned_cols=372  Identities=18%  Similarity=0.270  Sum_probs=258.4

Q ss_pred             eEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC
Q 013274           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (446)
Q Consensus        37 ~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~  116 (446)
                      .++.+|.+.|++++|+| ++++|++|+.||+|++||+.++...                 ....+|...|.++.|+| ++
T Consensus       609 ~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~i~vw~~~~~~~~-----------------~~~~~h~~~v~~~~~s~-~~  669 (1249)
T 3sfz_A          609 LVVRPHTDAVYHACFSQ-DGQRIASCGADKTLQVFKAETGEKL-----------------LDIKAHEDEVLCCAFSS-DD  669 (1249)
T ss_dssp             EEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEE-----------------EEECCCSSCEEEEEECT-TS
T ss_pred             EEEecccccEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCEE-----------------EEeccCCCCEEEEEEec-CC
Confidence            35679999999999997 6889999999999999999875421                 12358999999999987 78


Q ss_pred             cEEEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEE
Q 013274          117 GLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT  195 (446)
Q Consensus       117 ~~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~s  195 (446)
                      ++|++++.|++|++||+.+++++..+. +.+.+.++.+++.. +..++++|+.|+.|++||++++.+...+.+|.+.|.+
T Consensus       670 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~  748 (1249)
T 3sfz_A          670 SYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKS-NHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNH  748 (1249)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS-SCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCC-CceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEE
Confidence            899999999999999999999888776 34567888888753 3468999999999999999999999999999999999


Q ss_pred             EEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcc-----cccceeecc----ccccCCC--CCcCCC
Q 013274          196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPL-----LKRKVSISK----SLSAGQN--SSVKPR  264 (446)
Q Consensus       196 v~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~----~~~~~~~--~~~~~~  264 (446)
                      ++|+|+++. +++++.||+|++||++++.+...+...........+.     .........    .......  ......
T Consensus       749 ~~~sp~~~~-l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~  827 (1249)
T 3sfz_A          749 CRFSPDDEL-LASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIH  827 (1249)
T ss_dssp             EEECSSTTE-EEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETT
T ss_pred             EEEecCCCE-EEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEec
Confidence            999999985 7899999999999999988776664322111000000     000000000    0000000  000000


Q ss_pred             C--cc-----ccccCCCceeecccceeecCCccccccC---CCcccccccccccccCeEEEEEccCCCEEEEeecCCcEE
Q 013274          265 A--PQ-----KRSANGNGVRQSSVGRIPAKGSVRQRLH---PGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIR  334 (446)
Q Consensus       265 ~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~  334 (446)
                      .  ..     ........+..++.+...+.+.....+.   ...........+|.+.|.+++|+|+|.+|++++.|++|+
T Consensus       828 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~  907 (1249)
T 3sfz_A          828 TSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIR  907 (1249)
T ss_dssp             TCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEE
Confidence            0  00     0001111222333332222221111110   000111123468999999999999999999999999999


Q ss_pred             EEecCcCceee----e-ee--------------------e--------EEEeecCCCeEEEEcCCCcEEEEeCC-CceEE
Q 013274          335 LWDVESGRNTL----V-NF--------------------E--------TVRLQTSKPIQLATTQDPAVVFVPCM-TAVKA  380 (446)
Q Consensus       335 lWd~~~~~~~~----~-~~--------------------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  380 (446)
                      +||+.+.....    . ..                    .        ...........++++|++..+++++. +.+++
T Consensus       908 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i  987 (1249)
T 3sfz_A          908 VWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKI  987 (1249)
T ss_dssp             EEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEE
T ss_pred             EEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEE
Confidence            99976421100    0 00                    0        00001123445778899888887754 68999


Q ss_pred             EEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCC
Q 013274          381 FDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI  429 (446)
Q Consensus       381 ~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~  429 (446)
                      |++.+++....+.+|.+.|++++|+||+++|+|++.|++|++|++.+..
T Consensus       988 ~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~ 1036 (1249)
T 3sfz_A          988 IELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD 1036 (1249)
T ss_dssp             EETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTE
T ss_pred             EEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc
Confidence            9999999999999999999999999999999999999999999987653

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.5e-36  Score=291.35  Aligned_cols=294  Identities=14%  Similarity=0.189  Sum_probs=230.1

Q ss_pred             CCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEE
Q 013274           40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF  119 (446)
Q Consensus        40 ~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l  119 (446)
                      ..|.+.|++++|+| ++++|++|+.||+|++||+.+....        ...+     ....+|...|.++.++|.++.+|
T Consensus        64 ~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~vw~~~~~~~~--------~~~~-----~~~~~h~~~v~~~~~~~~~~~~l  129 (416)
T 2pm9_A           64 LQVDSKFNDLDWSH-NNKIIAGALDNGSLELYSTNEANNA--------INSM-----ARFSNHSSSVKTVKFNAKQDNVL  129 (416)
T ss_dssp             CCCSSCEEEEEECS-SSSCEEEEESSSCEEEECCSSTTSC--------CCEE-----EECCCSSSCCCEEEECSSSTTBE
T ss_pred             EecCCceEEEEECC-CCCeEEEEccCCeEEEeeccccccc--------ccch-----hhccCCccceEEEEEcCCCCCEE
Confidence            36899999999997 6789999999999999998763210        0011     12357999999999998558899


Q ss_pred             EEEeCCCeEEEEECCCCe------eeEEE----ecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCC
Q 013274          120 VTGSYDHYVKVWDTNCTR------VVMNF----KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGH  189 (446)
Q Consensus       120 ~s~s~D~~i~iWd~~~~~------~~~~~----~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h  189 (446)
                      ++++.|++|++||+.+++      .....    .+.+.+.++++++..  ..++++++.|+.|++||+++++.+..+..|
T Consensus       130 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~  207 (416)
T 2pm9_A          130 ASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSL--AHVFASAGSSNFASIWDLKAKKEVIHLSYT  207 (416)
T ss_dssp             EEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSC--TTEEEEESSSSCEEEEETTTTEEEEEECCC
T ss_pred             EEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCC--CcEEEEEcCCCCEEEEECCCCCcceEEecc
Confidence            999999999999998876      32222    234567788888752  358999999999999999999988888776


Q ss_pred             ------CCCeEEEEEecCCCeEEEEeeCCC---cEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCC
Q 013274          190 ------RDGIMTVEWSTSSEWILVTGGCDG---AIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSS  260 (446)
Q Consensus       190 ------~~~v~sv~~s~~~~~~l~S~s~Dg---~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (446)
                            ...|.+++|+|++..++++++.|+   .|++||++++...                                  
T Consensus       208 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~----------------------------------  253 (416)
T 2pm9_A          208 SPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP----------------------------------  253 (416)
T ss_dssp             CCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC----------------------------------
T ss_pred             ccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC----------------------------------
Confidence                  789999999999866789999998   9999999763100                                  


Q ss_pred             cCCCCccccccCCCceeecccceeecCCccccccCCCccccccccc-ccccCeEEEEEcc-CCCEEEEeecCCcEEEEec
Q 013274          261 VKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRAT-AHYGAVTGLKVTE-DGMYLLSAGSDSRIRLWDV  338 (446)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~fs~-dg~~l~sgs~D~~i~lWd~  338 (446)
                                                               ..... +|...|.+++|+| ++.+|++++.|++|++||+
T Consensus       254 -----------------------------------------~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~  292 (416)
T 2pm9_A          254 -----------------------------------------LQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNP  292 (416)
T ss_dssp             -----------------------------------------SBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECS
T ss_pred             -----------------------------------------cEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeC
Confidence                                                     00112 5778899999999 9999999999999999999


Q ss_pred             CcCceeeeeeeEEEeecCCCeEEEEcCCC-cEEEEeCC-CceEEEEeecCceEEEe------------------------
Q 013274          339 ESGRNTLVNFETVRLQTSKPIQLATTQDP-AVVFVPCM-TAVKAFDIWSGKTCLTF------------------------  392 (446)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~d~~~~~~~~~l------------------------  392 (446)
                      .+++..    ..+..+......++++|++ .++++++. ..+++|++.+.+.....                        
T Consensus       293 ~~~~~~----~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (416)
T 2pm9_A          293 ESAEQL----SQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESK  368 (416)
T ss_dssp             SSCCEE----EEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CC
T ss_pred             CCCccc----eeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccc
Confidence            987532    2223334556678999987 67777654 57999999776532221                        


Q ss_pred             -----------cccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC
Q 013274          393 -----------RGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH  428 (446)
Q Consensus       393 -----------~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~  428 (446)
                                 ..|...+++++|||||++|++++.|++|+||++.+.
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          369 EKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             SCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred             cccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence                       127788899999999999999999999999998753

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.4e-34  Score=266.46  Aligned_cols=283  Identities=14%  Similarity=0.197  Sum_probs=224.7

Q ss_pred             eEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC
Q 013274           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (446)
Q Consensus        37 ~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~  116 (446)
                      ..+.+|.+.|++|+| + ++.+|++|+.||+|++||+.++...                 ....+|...|.++.++| ++
T Consensus        12 ~~l~~h~~~v~~~~~-~-~~~~l~s~~~dg~v~vw~~~~~~~~-----------------~~~~~~~~~v~~~~~~~-~~   71 (313)
T 3odt_A           12 ATLKGHDQDVRDVVA-V-DDSKVASVSRDGTVRLWSKDDQWLG-----------------TVVYTGQGFLNSVCYDS-EK   71 (313)
T ss_dssp             EEECCCSSCEEEEEE-E-ETTEEEEEETTSEEEEEEESSSEEE-----------------EEEEECSSCEEEEEEET-TT
T ss_pred             HHhhCCCCCcEEEEe-c-CCCEEEEEEcCCcEEEEECCCCEEE-----------------EEeecCCccEEEEEECC-CC
Confidence            457899999999999 5 5678999999999999998654311                 11246888999999987 78


Q ss_pred             cEEEEEeCCCeEEEEECCCC---eeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCC
Q 013274          117 GLFVTGSYDHYVKVWDTNCT---RVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDG  192 (446)
Q Consensus       117 ~~l~s~s~D~~i~iWd~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~  192 (446)
                      .+|++++.|+.|++|++...   +.+..+. +.+.+.++.+.     ..++++++.|+.|++||  .+.....+..|...
T Consensus        72 ~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~  144 (313)
T 3odt_A           72 ELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ-----DGVVISGSWDKTAKVWK--EGSLVYNLQAHNAS  144 (313)
T ss_dssp             TEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE-----TTEEEEEETTSEEEEEE--TTEEEEEEECCSSC
T ss_pred             CEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEec-----CCEEEEEeCCCCEEEEc--CCcEEEecccCCCc
Confidence            89999999999999998754   3333333 34556666662     34789999999999999  67788889999999


Q ss_pred             eEEEEEec-CCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCcccccc
Q 013274          193 IMTVEWST-SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSA  271 (446)
Q Consensus       193 v~sv~~s~-~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (446)
                      +.++.|.| +++ .+++++.||.|++||...  ....+                                          
T Consensus       145 v~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~--~~~~~------------------------------------------  179 (313)
T 3odt_A          145 VWDAKVVSFSEN-KFLTASADKTIKLWQNDK--VIKTF------------------------------------------  179 (313)
T ss_dssp             EEEEEEEETTTT-EEEEEETTSCEEEEETTE--EEEEE------------------------------------------
T ss_pred             eeEEEEccCCCC-EEEEEECCCCEEEEecCc--eEEEE------------------------------------------
Confidence            99999998 555 578999999999999432  11111                                          


Q ss_pred             CCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEE
Q 013274          272 NGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV  351 (446)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~  351 (446)
                                                       ...|...|.+++|+|++. +++++.|+.|++||+.+++..    ...
T Consensus       180 ---------------------------------~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~----~~~  221 (313)
T 3odt_A          180 ---------------------------------SGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVL----RTY  221 (313)
T ss_dssp             ---------------------------------CSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEE----EEE
T ss_pred             ---------------------------------eccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhh----hhh
Confidence                                             012566799999999998 889999999999999887532    122


Q ss_pred             EeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCCC
Q 013274          352 RLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS  430 (446)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~~  430 (446)
                      ..+......+++++++.++.......+++||+.+++....+..|...|++++|+||++ +++++.|+.|++|+++....
T Consensus       222 ~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~  299 (313)
T 3odt_A          222 EGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRW  299 (313)
T ss_dssp             ECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGC
T ss_pred             hcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCce
Confidence            2334556678899988655555667899999999999999999999999999999998 66799999999999986643

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-34  Score=308.04  Aligned_cols=168  Identities=13%  Similarity=0.109  Sum_probs=142.1

Q ss_pred             eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (446)
Q Consensus        39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~  118 (446)
                      ..+|.+.|++|+|+| ++++||+|+.||+|+|||..+...            ..      ...|...|.++.|+|  +++
T Consensus        13 ~~gh~~~V~~lafsp-dg~~lAsgs~Dg~I~lw~~~~~~~------------~~------~~~~~~~V~~l~fsp--g~~   71 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDF-TQNLLAIATVTGEVHIYGQQQVEV------------VI------KLEDRSAIKEMRFVK--GIY   71 (902)
T ss_dssp             EEECSSCEEEEEEET-TTTEEEEEETTSEEEEECSTTCEE------------EE------ECSSCCCEEEEEEET--TTE
T ss_pred             ccCCCCCcEEEEECC-CCCEEEEEeCCCEEEEEeCCCcEE------------EE------EcCCCCCEEEEEEcC--CCE
Confidence            458999999999997 678999999999999999764321            00      124778899999988  569


Q ss_pred             EEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCcee-----------eeee
Q 013274          119 FVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAIS-----------QTLS  187 (446)
Q Consensus       119 l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~-----------~~l~  187 (446)
                      |+|++.|++|++||+.+++++..+...+.+.++++++.   ..++++|+.|+.|++||++++.+.           ..+.
T Consensus        72 L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~---g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~  148 (902)
T 2oaj_A           72 LVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDAS---LDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPA  148 (902)
T ss_dssp             EEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCTT---CSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSS
T ss_pred             EEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECCC---CCEEEEEcCCCcEEEEECCCCccccceeccccccccccc
Confidence            99999999999999999999888887788888888875   458999999999999999988753           3457


Q ss_pred             CCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeec
Q 013274          188 GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQ  231 (446)
Q Consensus       188 ~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~  231 (446)
                      +|.+.|.+++|+|++...+++|+.||+| +||++++.+.+.+..
T Consensus       149 ~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~  191 (902)
T 2oaj_A          149 ARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIY  191 (902)
T ss_dssp             SCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECC
T ss_pred             cCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEec
Confidence            8999999999999765568899999999 999999988877754

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.9e-35  Score=284.09  Aligned_cols=299  Identities=12%  Similarity=0.182  Sum_probs=233.1

Q ss_pred             CccceeEEEeecCCCCEEEEe----------eCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEE
Q 013274           42 HKGSINSLQVDLTEERYLLSG----------ASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIW  111 (446)
Q Consensus        42 H~~~v~~l~~s~~~~~~l~s~----------s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~  111 (446)
                      +...|++++|+|++..+|++|          +.|++|+|||+.++.....               .....|...|.++.|
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~---------------~~~~~~~~~v~~~~~   75 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP---------------IASLQVDSKFNDLDW   75 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC---------------SCCCCCSSCEEEEEE
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE---------------EEEEecCCceEEEEE
Confidence            446789999998544599999          8999999999986542100               011357888999999


Q ss_pred             eecCCcEEEEEeCCCeEEEEECCC----CeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc-----
Q 013274          112 YPVDTGLFVTGSYDHYVKVWDTNC----TRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA-----  181 (446)
Q Consensus       112 ~~~~~~~l~s~s~D~~i~iWd~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~-----  181 (446)
                      +| ++.+|++++.|++|++||+..    ...+..+. +.+.+.++.+++..  ..+|++++.|+.|++||++++.     
T Consensus        76 s~-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~  152 (416)
T 2pm9_A           76 SH-NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQ--DNVLASGGNNGEIFIWDMNKCTESPSN  152 (416)
T ss_dssp             CS-SSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSS--TTBEEEECSSSCEEBCBTTTTSSCTTT
T ss_pred             CC-CCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCC--CCEEEEEcCCCeEEEEECCCCcccccc
Confidence            87 788999999999999999987    33444443 45567888888752  3579999999999999999886     


Q ss_pred             -eee---eeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCC
Q 013274          182 -ISQ---TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQ  257 (446)
Q Consensus       182 -~~~---~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (446)
                       ...   .+.+|...|.+++|+|++..+|++++.||.|++||++++.+...+....                        
T Consensus       153 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~------------------------  208 (416)
T 2pm9_A          153 YTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTS------------------------  208 (416)
T ss_dssp             CCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCC------------------------
T ss_pred             ccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccc------------------------
Confidence             333   3468999999999999954568999999999999998876544331100                        


Q ss_pred             CCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCC-CEEEEeecCC---cE
Q 013274          258 NSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDS---RI  333 (446)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~sgs~D~---~i  333 (446)
                                                                    ...+|...|.+++|+|++ .+|++++.|+   .|
T Consensus       209 ----------------------------------------------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i  242 (416)
T 2pm9_A          209 ----------------------------------------------PNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSI  242 (416)
T ss_dssp             ----------------------------------------------CSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCC
T ss_pred             ----------------------------------------------cccccCCceEEEEECCCCCCEEEEEECCCCCceE
Confidence                                                          012456779999999997 6899999999   99


Q ss_pred             EEEecCcCceeeeeeeEEEeecCCCeEEEEcC-CCcEEEEeC-CCceEEEEeecCceEEEecccccceEEEEEcCCC-CE
Q 013274          334 RLWDVESGRNTLVNFETVRLQTSKPIQLATTQ-DPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQD-QE  410 (446)
Q Consensus       334 ~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~-~~  410 (446)
                      ++||+.++......+.  ..+......++++| ++.++++++ ...+++||+.+++.+..+.+|...|++++|+|++ ++
T Consensus       243 ~~~d~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~  320 (416)
T 2pm9_A          243 LIWDLRNANTPLQTLN--QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDL  320 (416)
T ss_dssp             CEEETTSTTSCSBCCC--SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTE
T ss_pred             EEEeCCCCCCCcEEee--cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCE
Confidence            9999998642222111  02234556788888 777777765 4689999999999999999999999999999999 89


Q ss_pred             EEEeeCCCcEEEeCCCCCCC
Q 013274          411 LYTGGNDRQILVWCPSRHIS  430 (446)
Q Consensus       411 lvtgs~D~~v~vW~~~~~~~  430 (446)
                      |++++.|+.|+||++.....
T Consensus       321 l~s~~~d~~i~iw~~~~~~~  340 (416)
T 2pm9_A          321 FACASFDNKIEVQTLQNLTN  340 (416)
T ss_dssp             EEECCSSSEEEEEESCCCCC
T ss_pred             EEEEecCCcEEEEEccCCCC
Confidence            99999999999999986653

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1e-33  Score=276.81  Aligned_cols=344  Identities=13%  Similarity=0.192  Sum_probs=237.1

Q ss_pred             cceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEe
Q 013274           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS  123 (446)
Q Consensus        44 ~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s  123 (446)
                      ..+++++|+| ++++|++|+.|++|++||+.+....                 ....+|  .+.++.++++++.+|++|+
T Consensus        57 ~~~~~~~~s~-~g~~l~~~~~d~~v~i~d~~~~~~~-----------------~~~~~~--~~~~~~~~~~~~~~l~~~~  116 (420)
T 3vl1_A           57 DAGKGNTFEK-VGSHLYKARLDGHDFLFNTIIRDGS-----------------KMLKRA--DYTAVDTAKLQMRRFILGT  116 (420)
T ss_dssp             BCCTTCEEEE-EETTEEEEEETTEEEEEECCSEETT-----------------TTSCSC--CEEEEEEECSSSCEEEEEE
T ss_pred             ccccceeeee-cCCeEEEEEcCCcEEEEEeccccee-----------------eEEecC--CceEEEEEecCCCEEEEEE
Confidence            3456899997 5778999999999999998765431                 111233  4455556666899999999


Q ss_pred             CCCeEEEEECCCCeeeEEE-ecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCC
Q 013274          124 YDHYVKVWDTNCTRVVMNF-KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSS  202 (446)
Q Consensus       124 ~D~~i~iWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~  202 (446)
                      .|++|++||+.+++....+ .+.+.+.++++++.   ..+|++|+.|+.|++||+++++.+..+.+|.+.|.+++|+|++
T Consensus       117 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~  193 (420)
T 3vl1_A          117 TEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPS---GEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRG  193 (420)
T ss_dssp             TTSCEEEECTTSCEEEEETTSSSSCEEEEEECTT---SSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTT
T ss_pred             CCCCEEEEeCCCcceeeecccccCccEEEEECCC---CCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCC
Confidence            9999999999988887765 45667889999885   3489999999999999999999999999999999999999998


Q ss_pred             CeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccc
Q 013274          203 EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVG  282 (446)
Q Consensus       203 ~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (446)
                      +. |++++.|++|++||++++++...+.........   +.  ....  .......      ...........+..++.+
T Consensus       194 ~~-l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~---v~--~~~~--~~~~~~~------~~~~~~~~v~~~~~s~~~  259 (420)
T 3vl1_A          194 RN-VLSASLDGTIRLWECGTGTTIHTFNRKENPHDG---VN--SIAL--FVGTDRQ------LHEISTSKKNNLEFGTYG  259 (420)
T ss_dssp             TE-EEEEETTSCEEEEETTTTEEEEEECBTTBTTCC---EE--EEEE--EECCCSS------CGGGCCCCCCTTCSSCTT
T ss_pred             CE-EEEEcCCCcEEEeECCCCceeEEeecCCCCCCC---cc--EEEE--ecCCcce------eeecccCcccceEEcCCC
Confidence            85 789999999999999999887776543211100   00  0000  0000000      000000011112222222


Q ss_pred             eeecCCccccccCCCccc----ccccccccccCeEEEEEccCCC-EEEEeecCCcEEEEecCcCceeeeeeeEEEeecCC
Q 013274          283 RIPAKGSVRQRLHPGMLS----SQDRATAHYGAVTGLKVTEDGM-YLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK  357 (446)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~----~~~~~~~h~~~v~~l~fs~dg~-~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~  357 (446)
                      ...+.+..+..+......    .......|...|.+++|+|++. +|++|+.|+.|++||+.+++....   .+......
T Consensus       260 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~---~~~~~~~~  336 (420)
T 3vl1_A          260 KYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVG---EFLINEGT  336 (420)
T ss_dssp             EEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSE---EEEESTTS
T ss_pred             CEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchh---hhhccCCC
Confidence            222221111111000000    0111235788999999999999 999999999999999998653222   22222344


Q ss_pred             CeEEEEcCCCcEEEEeCC-CceEEEEeecC---------ceEEEecccccceEEEEEcCCCC---EEEEeeCCCcEEEeC
Q 013274          358 PIQLATTQDPAVVFVPCM-TAVKAFDIWSG---------KTCLTFRGHYEYVNCCCFSSQDQ---ELYTGGNDRQILVWC  424 (446)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~---------~~~~~l~gH~~~v~~~~fSpd~~---~lvtgs~D~~v~vW~  424 (446)
                      ++...+.+++..+++++. ..+++|++.+.         .....+.+|.+.|.+++|+||++   .|++++.++.+++|+
T Consensus       337 ~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~  416 (420)
T 3vl1_A          337 PINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYN  416 (420)
T ss_dssp             CEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEE
T ss_pred             CceEEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEe
Confidence            555556667777777654 57999999763         22346788999999999999999   788888899999999


Q ss_pred             CCC
Q 013274          425 PSR  427 (446)
Q Consensus       425 ~~~  427 (446)
                      ++.
T Consensus       417 ~~~  419 (420)
T 3vl1_A          417 LSN  419 (420)
T ss_dssp             SCC
T ss_pred             ccC
Confidence            865

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=9.1e-34  Score=270.20  Aligned_cols=248  Identities=17%  Similarity=0.208  Sum_probs=194.1

Q ss_pred             CCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEE
Q 013274           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV  120 (446)
Q Consensus        41 ~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~  120 (446)
                      .|...|++|+|++ + ..|++|+.||+|+|||++++....             .......+|...|.++.|+| ++++|+
T Consensus        80 ~~~~~v~~~~~s~-d-~~l~~~s~dg~v~lWd~~~~~~~~-------------~~~~~~~~H~~~V~~v~~sp-dg~~l~  143 (344)
T 4gqb_B           80 QTEAGVADLTWVG-E-RGILVASDSGAVELWELDENETLI-------------VSKFCKYEHDDIVSTVSVLS-SGTQAV  143 (344)
T ss_dssp             EESSCEEEEEEET-T-TEEEEEETTSEEEEEEECTTSSCE-------------EEEEEEECCSSCEEEEEECT-TSSEEE
T ss_pred             ccCCCEEEEEEeC-C-CeEEEEECCCEEEEEeccCCCcee-------------EeeccccCCCCCEEEEEECC-CCCEEE
Confidence            3567899999996 3 468899999999999998765321             01122358999999999987 889999


Q ss_pred             EEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeee--CCCCCeEEEE
Q 013274          121 TGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS--GHRDGIMTVE  197 (446)
Q Consensus       121 s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~--~h~~~v~sv~  197 (446)
                      ||+.|++|++||+.+++++..+. +.+.+.++++++...  .+|++++.|+.|++||+++++....+.  .|...+.+++
T Consensus       144 sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~--~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  221 (344)
T 4gqb_B          144 SGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKD--SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLA  221 (344)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCT--TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEE
T ss_pred             EEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCC--Cceeeeccccccccccccccceeeeeecceeeccceeee
Confidence            99999999999999999988876 456788888887543  478999999999999999998877764  5667899999


Q ss_pred             EecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCcee
Q 013274          198 WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVR  277 (446)
Q Consensus       198 ~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (446)
                      |+|++..+|++|+.||+|++||+++++++..                                                 
T Consensus       222 ~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~-------------------------------------------------  252 (344)
T 4gqb_B          222 WHPQQSEVFVFGDENGTVSLVDTKSTSCVLS-------------------------------------------------  252 (344)
T ss_dssp             ECSSCTTEEEEEETTSEEEEEESCC--CCEE-------------------------------------------------
T ss_pred             ecCCCCcceEEeccCCcEEEEECCCCcEEEE-------------------------------------------------
Confidence            9997776789999999999999987654322                                                 


Q ss_pred             ecccceeecCCccccccCCCcccccccccccccCeEEEEEccCC-CEEEEeecCCcEEEEecCcCceeeeeeeEEEeecC
Q 013274          278 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTS  356 (446)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~  356 (446)
                                                 ..+|...|++|+|+|+| .+|+||+.|++|+|||+.+++.  .   ....+..
T Consensus       253 ---------------------------~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~--~---~~~~H~~  300 (344)
T 4gqb_B          253 ---------------------------SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL--F---RSQAHRD  300 (344)
T ss_dssp             ---------------------------EECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE--E---EECCCSS
T ss_pred             ---------------------------EcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE--E---EEcCCCC
Confidence                                       23677889999999998 5899999999999999987642  1   1223345


Q ss_pred             CCeEEEEcCCCc-EEEEe-CCCceEEEEeecCc
Q 013274          357 KPIQLATTQDPA-VVFVP-CMTAVKAFDIWSGK  387 (446)
Q Consensus       357 ~~~~~~~~~~~~-~~~~~-~~~~~~~~d~~~~~  387 (446)
                      ....++++|++. +++++ .+..+++|++.+..
T Consensus       301 ~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          301 FVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             CEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             CEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            567788998875 45554 45789999997654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-33  Score=274.01  Aligned_cols=293  Identities=16%  Similarity=0.174  Sum_probs=224.1

Q ss_pred             CCccceeEEEeecCCCC-EEEEeeCCCcEEEEEc----ccCcCCCCCCccccccceEEecc-----ccccCccccEeEEE
Q 013274           41 PHKGSINSLQVDLTEER-YLLSGASDSSVAVYDV----QRATDYEGGGHIAKHRSVFVVDK-----QHEHGHKYAISSAI  110 (446)
Q Consensus        41 ~H~~~v~~l~~s~~~~~-~l~s~s~Dg~i~lWd~----~~~~~~~~~~~~~~~~~~~~~~~-----~~~~gh~~~V~~~~  110 (446)
                      .|.+.|++++|+| +++ +|++|+.||+|++||+    .++...-      ..........     ....+|...|.++.
T Consensus        43 ~~~~~v~~~~~s~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (425)
T 1r5m_A           43 VKLDNIVSSTWNP-LDESILAYGEKNSVARLARIVETDQEGKKYW------KLTIIAELRHPFALSASSGKTTNQVTCLA  115 (425)
T ss_dssp             EECSCCSEEEECS-SCTTEEEEEETBTEEEEEEEEEC------CE------EEEEEEEEECCCCCC------CBCEEEEE
T ss_pred             eccCceEEEEECC-CCCcEEEEecCCceEEEEEEecccCCccccc------cccccccccccccccccccCCCCceEEEE
Confidence            4669999999997 466 9999999999999999    6554100      0000001100     01124788999999


Q ss_pred             EeecCCcEEEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCC
Q 013274          111 WYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGH  189 (446)
Q Consensus       111 ~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h  189 (446)
                      |+| ++++|++++.|++|++|| .++..+..+. +.+.+.++.+++.   ..+|++++.|+.|++||++++..+..+..|
T Consensus       116 ~s~-~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  190 (425)
T 1r5m_A          116 WSH-DGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKD---GTHIISMDVENVTILWNVISGTVMQHFELK  190 (425)
T ss_dssp             ECT-TSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTT---SSEEEEEETTCCEEEEETTTTEEEEEECCC
T ss_pred             EcC-CCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCC---CCEEEEEecCCeEEEEECCCCcEEEEeecc
Confidence            987 789999999999999999 4556665555 4566888888874   347899999999999999999998888888


Q ss_pred             CCC---------------eEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccc
Q 013274          190 RDG---------------IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLS  254 (446)
Q Consensus       190 ~~~---------------v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (446)
                      ...               +.++.|+|++  .+++++.||.|++||++++.....                          
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~~~--------------------------  242 (425)
T 1r5m_A          191 ETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPTGK--------------------------  242 (425)
T ss_dssp             ---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCSEE--------------------------
T ss_pred             ccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCceeee--------------------------
Confidence            777               9999999985  368999999999999876432111                          


Q ss_pred             cCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEE
Q 013274          255 AGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIR  334 (446)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~  334 (446)
                                                                        ..+|...|.+++|+|++.+|++++.|+.|+
T Consensus       243 --------------------------------------------------~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~  272 (425)
T 1r5m_A          243 --------------------------------------------------LIGHHGPISVLEFNDTNKLLLSASDDGTLR  272 (425)
T ss_dssp             --------------------------------------------------ECCCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             --------------------------------------------------eccCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence                                                              124667899999999999999999999999


Q ss_pred             EEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEe-CCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEE
Q 013274          335 LWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVP-CMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYT  413 (446)
Q Consensus       335 lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvt  413 (446)
                      +||+.+++...    ....+......+++.+++ .++++ ....+++||+.+++....+.+|...|++++|+|++++|++
T Consensus       273 i~d~~~~~~~~----~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  347 (425)
T 1r5m_A          273 IWHGGNGNSQN----CFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAV  347 (425)
T ss_dssp             EECSSSBSCSE----EECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEE
T ss_pred             EEECCCCccce----EecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEE
Confidence            99998765321    122233455678888888 55544 5578999999999999999999999999999999999999


Q ss_pred             eeCCCcEEEeCCCCC
Q 013274          414 GGNDRQILVWCPSRH  428 (446)
Q Consensus       414 gs~D~~v~vW~~~~~  428 (446)
                      ++.|+.|++|++...
T Consensus       348 ~~~dg~i~i~~~~~~  362 (425)
T 1r5m_A          348 AFMDGQVNVYDLKKL  362 (425)
T ss_dssp             EETTSCEEEEECHHH
T ss_pred             EECCCeEEEEECCCC
Confidence            999999999998744

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.4e-33  Score=272.14  Aligned_cols=282  Identities=17%  Similarity=0.245  Sum_probs=221.3

Q ss_pred             CCccce--eEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274           41 PHKGSI--NSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (446)
Q Consensus        41 ~H~~~v--~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~  118 (446)
                      +|...+  +++.|++   ..+++++.|++|++||++++...            ...    ...|...|.++.|+| ++.+
T Consensus        89 ~~~~~~~~~~~~~s~---~~l~~~~~d~~v~lw~~~~~~~~------------~~~----~~~~~~~v~~v~~s~-~~~~  148 (401)
T 4aez_A           89 GIIDDYYLNLLDWSN---LNVVAVALERNVYVWNADSGSVS------------ALA----ETDESTYVASVKWSH-DGSF  148 (401)
T ss_dssp             TCCCCTTCBCEEECT---TSEEEEEETTEEEEEETTTCCEE------------EEE----ECCTTCCEEEEEECT-TSSE
T ss_pred             CCcCCceEEEEeecC---CCEEEEECCCeEEEeeCCCCcEe------------Eee----ecCCCCCEEEEEECC-CCCE
Confidence            566554  4566653   34788999999999999875421            011    124888999999987 8889


Q ss_pred             EEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCC-CCceeeeeeCCCCCeEEE
Q 013274          119 FVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA-SGAISQTLSGHRDGIMTV  196 (446)
Q Consensus       119 l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~-~~~~~~~l~~h~~~v~sv  196 (446)
                      |++|+.|+.|++||+.+++.+..+. +.+.+.++.+.     ..++++|+.|+.|++||++ .+.....+.+|.+.|.++
T Consensus       149 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~  223 (401)
T 4aez_A          149 LSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN-----RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGL  223 (401)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE-----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEE
T ss_pred             EEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC-----CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEE
Confidence            9999999999999999998887775 34556777663     2489999999999999999 456788899999999999


Q ss_pred             EEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCce
Q 013274          197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGV  276 (446)
Q Consensus       197 ~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (446)
                      .|+|+++. |++|+.|+.|++||++++.+...+                                               
T Consensus       224 ~~~~~~~~-l~s~~~d~~v~iwd~~~~~~~~~~-----------------------------------------------  255 (401)
T 4aez_A          224 AWRSDGLQ-LASGGNDNVVQIWDARSSIPKFTK-----------------------------------------------  255 (401)
T ss_dssp             EECTTSSE-EEEEETTSCEEEEETTCSSEEEEE-----------------------------------------------
T ss_pred             EEcCCCCE-EEEEeCCCeEEEccCCCCCccEEe-----------------------------------------------
Confidence            99999875 789999999999999865432211                                               


Q ss_pred             eecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCC-EEEEee--cCCcEEEEecCcCceeeeeeeEEEe
Q 013274          277 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM-YLLSAG--SDSRIRLWDVESGRNTLVNFETVRL  353 (446)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~sgs--~D~~i~lWd~~~~~~~~~~~~~~~~  353 (446)
                                                   .+|...|.+++|+|++. ++++|+  .|+.|++||+.+++...    ... 
T Consensus       256 -----------------------------~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~----~~~-  301 (401)
T 4aez_A          256 -----------------------------TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVN----TVD-  301 (401)
T ss_dssp             -----------------------------CCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEE----EEE-
T ss_pred             -----------------------------cCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEE----EEe-
Confidence                                         24667799999999875 566654  79999999999875321    111 


Q ss_pred             ecCCCeEEEEcCCCcEEEEeC---CCceEEEEeecCceE--EEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC
Q 013274          354 QTSKPIQLATTQDPAVVFVPC---MTAVKAFDIWSGKTC--LTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH  428 (446)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~--~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~  428 (446)
                      .......+++++++..+++.+   .+.+++|++.+++..  ..+.+|.+.|++++|+||+++|++++.|++|++|++...
T Consensus       302 ~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~  381 (401)
T 4aez_A          302 AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDG  381 (401)
T ss_dssp             CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-
T ss_pred             CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence            234556788999998888743   468999999987654  457899999999999999999999999999999999765


Q ss_pred             C
Q 013274          429 I  429 (446)
Q Consensus       429 ~  429 (446)
                      .
T Consensus       382 ~  382 (401)
T 4aez_A          382 D  382 (401)
T ss_dssp             -
T ss_pred             c
Confidence            4

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=5.8e-34  Score=273.23  Aligned_cols=269  Identities=16%  Similarity=0.152  Sum_probs=187.6

Q ss_pred             CEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeC------CCeEEE
Q 013274           57 RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY------DHYVKV  130 (446)
Q Consensus        57 ~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~------D~~i~i  130 (446)
                      .++++++.+.....|++....                     ..+|...|.++.|+| ||++|||||.      |++|++
T Consensus        17 ~~~~~~~g~~~~~~w~~p~~~---------------------p~~H~~~V~~v~fSp-DG~~las~s~d~~~~wd~~v~~   74 (357)
T 4g56_B           17 NLYFQSNGSSKGSAWGRPVTA---------------------PACMEVQIGAVRYRR-DGALLLAASSLSSRTWGGSIWV   74 (357)
T ss_dssp             --------------------------------------------CCCSEEEEEEECS-SSCEEEEEECSSSSSCCEEEEE
T ss_pred             ceEEecCCCccccccCCCCCC---------------------cccccCCEEEEEECC-CCCEEEEEcCCCCccccCeEEE
Confidence            345666777889999875321                     136889999999987 8999999997      788999


Q ss_pred             EECCCCeee-----EEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCcee----eeeeCCCCCeEEEEEecC
Q 013274          131 WDTNCTRVV-----MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAIS----QTLSGHRDGIMTVEWSTS  201 (446)
Q Consensus       131 Wd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~----~~l~~h~~~v~sv~~s~~  201 (446)
                      |+..++...     ....+...+.+++|++..    .+++++.|+.|++||+.+++..    ....+|.+.|.+++|+|+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~----~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spd  150 (357)
T 4g56_B           75 FKDPEGAPNESLCTAGVQTEAGVTDVAWVSEK----GILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSD  150 (357)
T ss_dssp             ESSCC---CGGGCSEEEECSSCEEEEEEETTT----EEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSS
T ss_pred             EECCCCCcceeEecccCCCCCCEEEEEEcCCC----CEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCC
Confidence            998766432     233455668899998853    3566788999999999988643    234589999999999999


Q ss_pred             CCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeeccc
Q 013274          202 SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV  281 (446)
Q Consensus       202 ~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (446)
                      +++ |++|+.|++|++||++++.++..+                                                    
T Consensus       151 g~~-l~sgs~dg~v~iwd~~~~~~~~~~----------------------------------------------------  177 (357)
T 4g56_B          151 GTQ-AVSGGKDFSVKVWDLSQKAVLKSY----------------------------------------------------  177 (357)
T ss_dssp             SSE-EEEEETTSCEEEEETTTTEEEEEE----------------------------------------------------
T ss_pred             CCE-EEEEeCCCeEEEEECCCCcEEEEE----------------------------------------------------
Confidence            985 789999999999999876543322                                                    


Q ss_pred             ceeecCCccccccCCCcccccccccccccCeEEEEEccCCC-EEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeE
Q 013274          282 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM-YLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQ  360 (446)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~  360 (446)
                                              .+|.+.|++++|+|++. ++++++.|++|++||+.+++.... + ...........
T Consensus       178 ------------------------~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~-~-~~~~~~~~v~~  231 (357)
T 4g56_B          178 ------------------------NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR-I-DFCASDTIPTS  231 (357)
T ss_dssp             ------------------------CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB-C-CCTTCCSCEEE
T ss_pred             ------------------------cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee-e-eeccccccccc
Confidence                                    35778899999999985 789999999999999988754221 1 11111233456


Q ss_pred             EEEcCCC-cEEEEeC-CCceEEEEeecCceEEEecccccceEEEEEcCCC-CEEEEeeCCCcEEEeCCCCCCC
Q 013274          361 LATTQDP-AVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQD-QELYTGGNDRQILVWCPSRHIS  430 (446)
Q Consensus       361 ~~~~~~~-~~~~~~~-~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~-~~lvtgs~D~~v~vW~~~~~~~  430 (446)
                      ++++|+. .++++++ ...+++||+.+++...++.+|.+.|++++|+|++ ++|+|||.|++|+||+++....
T Consensus       232 v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~  304 (357)
T 4g56_B          232 VTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEV  304 (357)
T ss_dssp             EEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEE
T ss_pred             hhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcE
Confidence            7888874 5566654 4679999999999999999999999999999997 5799999999999999986643

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=5.6e-33  Score=264.52  Aligned_cols=246  Identities=22%  Similarity=0.329  Sum_probs=203.2

Q ss_pred             ccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeC
Q 013274           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI  177 (446)
Q Consensus        99 ~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~  177 (446)
                      +.+|...|.++.|+| ++++|+||+.|++|++||+.++..+..+.. .+.+..+++++.   ..++++|+.|+.|++||+
T Consensus        51 l~gH~~~v~~~~~s~-d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~s~~~d~~v~iw~~  126 (340)
T 1got_B           51 LRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS---GNYVACGGLDNICSIYNL  126 (340)
T ss_dssp             ECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTT---SSEEEEEETTCEEEEEET
T ss_pred             ecCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCC---CCEEEEEeCCCeEEEEEC
Confidence            468999999999986 789999999999999999999888877764 345788888875   458999999999999999


Q ss_pred             CCCc----eeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeecccc
Q 013274          178 ASGA----ISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSL  253 (446)
Q Consensus       178 ~~~~----~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (446)
                      .++.    ....+.+|.+.|.++.|++++.  +++++.|++|++||++++.+...+                        
T Consensus       127 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~s~d~~i~~wd~~~~~~~~~~------------------------  180 (340)
T 1got_B          127 KTREGNVRVSRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTF------------------------  180 (340)
T ss_dssp             TTCSBSCEEEEEEECCSSCEEEEEEEETTE--EEEEETTSCEEEEETTTTEEEEEE------------------------
T ss_pred             ccCCCcceeEEEecCCCccEEEEEECCCCc--EEEEECCCcEEEEECCCCcEEEEE------------------------
Confidence            8763    4567889999999999998864  689999999999999876543221                        


Q ss_pred             ccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcE
Q 013274          254 SAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRI  333 (446)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i  333 (446)
                                                                          .+|.+.|.+++|+|++.+|++|+.|++|
T Consensus       181 ----------------------------------------------------~~h~~~v~~~~~~~~~~~l~sg~~d~~v  208 (340)
T 1got_B          181 ----------------------------------------------------TGHTGDVMSLSLAPDTRLFVSGACDASA  208 (340)
T ss_dssp             ----------------------------------------------------CCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ----------------------------------------------------cCCCCceEEEEECCCCCEEEEEeCCCcE
Confidence                                                                3577889999999999999999999999


Q ss_pred             EEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecc--cccceEEEEEcCCCCE
Q 013274          334 RLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRG--HYEYVNCCCFSSQDQE  410 (446)
Q Consensus       334 ~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~g--H~~~v~~~~fSpd~~~  410 (446)
                      ++||+.++....    .+..+......++++|++..+++++. ..+++||+.+++.+..+..  +...|++++|+|++++
T Consensus       209 ~~wd~~~~~~~~----~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  284 (340)
T 1got_B          209 KLWDVREGMCRQ----TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL  284 (340)
T ss_dssp             EEEETTTCSEEE----EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSE
T ss_pred             EEEECCCCeeEE----EEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCE
Confidence            999998875321    22223445667889999998888755 5899999998887776653  3457999999999999


Q ss_pred             EEEeeCCCcEEEeCCCCCCC
Q 013274          411 LYTGGNDRQILVWCPSRHIS  430 (446)
Q Consensus       411 lvtgs~D~~v~vW~~~~~~~  430 (446)
                      |++|+.|++|+||+......
T Consensus       285 l~~g~~d~~i~vwd~~~~~~  304 (340)
T 1got_B          285 LLAGYDDFNCNVWDALKADR  304 (340)
T ss_dssp             EEEEETTSEEEEEETTTCCE
T ss_pred             EEEECCCCeEEEEEcccCcE
Confidence            99999999999999876543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=6.2e-33  Score=284.35  Aligned_cols=363  Identities=15%  Similarity=0.188  Sum_probs=246.4

Q ss_pred             eEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccc---cEeEEEEee
Q 013274           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKY---AISSAIWYP  113 (446)
Q Consensus        37 ~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~---~V~~~~~~~  113 (446)
                      ..+.+|.+.|++++|+|++..+|++++.|++|++||+.+....                 ....+|..   .|.++.++|
T Consensus       154 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~-----------------~~~~~~~~~~~~v~~~~~~~  216 (615)
T 1pgu_A          154 GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS-----------------ASDRTHHKQGSFVRDVEFSP  216 (615)
T ss_dssp             EECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEE-----------------EEECSSSCTTCCEEEEEECS
T ss_pred             eeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCccee-----------------eeecccCCCCceEEEEEECC
Confidence            3467899999999999754448999999999999998764321                 12346887   899999988


Q ss_pred             cCCcEEEEEeCCCeEEEEECCCCeeeEEE-----ecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeC
Q 013274          114 VDTGLFVTGSYDHYVKVWDTNCTRVVMNF-----KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG  188 (446)
Q Consensus       114 ~~~~~l~s~s~D~~i~iWd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~  188 (446)
                      .++.+|++++.|+.|++||+.+++.+..+     .+.+.+..+.++ .   ..++++++.|+.|++||+++++....+..
T Consensus       217 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~  292 (615)
T 1pgu_A          217 DSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-D---SQKFATVGADATIRVWDVTTSKCVQKWTL  292 (615)
T ss_dssp             TTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-S---SSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-C---CCEEEEEcCCCcEEEEECCCCcEEEEEcC
Confidence            33889999999999999999999988887     556678888887 3   35889999999999999999998888887


Q ss_pred             C----CCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCC--Ccccccc----------------
Q 013274          189 H----RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRR--PPLLKRK----------------  246 (446)
Q Consensus       189 h----~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~--~~~~~~~----------------  246 (446)
                      |    ...+.++.|+ +++. +++++.||.|++||++++..+..+..+...+...  +.+....                
T Consensus       293 ~~~~~~~~~~~~~~~-~~~~-l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~  370 (615)
T 1pgu_A          293 DKQQLGNQQVGVVAT-GNGR-IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQD  370 (615)
T ss_dssp             CTTCGGGCEEEEEEE-ETTE-EEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECC
T ss_pred             CCCcccCceeEEEeC-CCCe-EEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCc
Confidence            6    4678888886 5554 7899999999999999877766665433211000  0000000                


Q ss_pred             ----e-eeccc-----cccCCCCCcCCCCcccccc--CCCceeeccc---------------------------------
Q 013274          247 ----V-SISKS-----LSAGQNSSVKPRAPQKRSA--NGNGVRQSSV---------------------------------  281 (446)
Q Consensus       247 ----~-~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---------------------------------  281 (446)
                          + .+...     ...................  ....+..++.                                 
T Consensus       371 ~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (615)
T 1pgu_A          371 HSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGS  450 (615)
T ss_dssp             CCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEE
T ss_pred             ccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCce
Confidence                0 00000     0000000000000000000  0000000000                                 


Q ss_pred             -----ceeecCCcc-ccccCCCcccc--c--ccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEE
Q 013274          282 -----GRIPAKGSV-RQRLHPGMLSS--Q--DRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV  351 (446)
Q Consensus       282 -----~~~~~~~~~-~~~~~~~~~~~--~--~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~  351 (446)
                           +...+.+.. ...+.......  .  ....+|...|++++|+|+|++|++|+.|+.|++||+.+++...    .+
T Consensus       451 ~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~----~~  526 (615)
T 1pgu_A          451 AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKT----SR  526 (615)
T ss_dssp             EEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE----CC
T ss_pred             EEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCccee----Ee
Confidence                 000000000 00000000000  0  2345788999999999999999999999999999998875321    11


Q ss_pred             Ee-ecCCCeEEEEcC----------CCcEEEEeCC-CceEEEEeecC-ceEEEecccccceEEEEEcCCCCEEEEeeCCC
Q 013274          352 RL-QTSKPIQLATTQ----------DPAVVFVPCM-TAVKAFDIWSG-KTCLTFRGHYEYVNCCCFSSQDQELYTGGNDR  418 (446)
Q Consensus       352 ~~-~~~~~~~~~~~~----------~~~~~~~~~~-~~~~~~d~~~~-~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~  418 (446)
                      .. +......++++|          ++.++++++. ..+++|++.++ +.+..+.+|.+.|++++|+||++ |+|++.|+
T Consensus       527 ~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~  605 (615)
T 1pgu_A          527 WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADA  605 (615)
T ss_dssp             SCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTS
T ss_pred             ecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCc
Confidence            11 344566789999          8888888764 58999999988 78899999999999999999999 99999999


Q ss_pred             cEEEeCCCC
Q 013274          419 QILVWCPSR  427 (446)
Q Consensus       419 ~v~vW~~~~  427 (446)
                      +|++|+++.
T Consensus       606 ~v~iw~~~~  614 (615)
T 1pgu_A          606 CIKRWNVVL  614 (615)
T ss_dssp             CEEEEEEC-
T ss_pred             eEEEEeeec
Confidence            999999864

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.4e-32  Score=272.60  Aligned_cols=279  Identities=20%  Similarity=0.295  Sum_probs=220.9

Q ss_pred             EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEee-cCC
Q 013274           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYP-VDT  116 (446)
Q Consensus        38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~-~~~  116 (446)
                      .+.+|.+.|++++|++ ++ +|++|+.||+|++||++++...                 ....+|...|.++.+.+ .++
T Consensus       157 ~~~~h~~~V~~l~~~~-~~-~l~s~s~dg~i~vwd~~~~~~~-----------------~~~~~h~~~v~~l~~~~~~~~  217 (464)
T 3v7d_B          157 QLSGHDGGVWALKYAH-GG-ILVSGSTDRTVRVWDIKKGCCT-----------------HVFEGHNSTVRCLDIVEYKNI  217 (464)
T ss_dssp             EECCCSSCEEEEEECS-TT-EEEEEETTSCEEEEETTTTEEE-----------------EEECCCSSCEEEEEEEESSSC
T ss_pred             EEeCCCcCEEEEEEcC-CC-EEEEEeCCCCEEEEECCCCcEE-----------------EEECCCCCccEEEEEecCCCC
Confidence            4578999999999986 34 8999999999999999865321                 12357999999999986 467


Q ss_pred             cEEEEEeCCCeEEEEECCCCeeeEE-----------------------Ee-cCCceEEeeeccCCCCceEEEEeeCCCcE
Q 013274          117 GLFVTGSYDHYVKVWDTNCTRVVMN-----------------------FK-MPGKVYRTAMSPLAASHMLIAAGTEDVQV  172 (446)
Q Consensus       117 ~~l~s~s~D~~i~iWd~~~~~~~~~-----------------------~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v  172 (446)
                      .++++|+.|++|++||+.++.....                       +. +...+..+  .   .+..++++|+.|+.|
T Consensus       218 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~---~~~~~l~~~~~d~~i  292 (464)
T 3v7d_B          218 KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--S---GHGNIVVSGSYDNTL  292 (464)
T ss_dssp             EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--E---EETTEEEEEETTSCE
T ss_pred             CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--c---CCCCEEEEEeCCCeE
Confidence            8999999999999999987653321                       11 11222222  2   234589999999999


Q ss_pred             EEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccc
Q 013274          173 RLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKS  252 (446)
Q Consensus       173 ~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (446)
                      ++||+++++.+..+.+|...|.++.|+|+++. +++|+.||+|++||++++.++..+                       
T Consensus       293 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~sg~~dg~i~vwd~~~~~~~~~~-----------------------  348 (464)
T 3v7d_B          293 IVWDVAQMKCLYILSGHTDRIYSTIYDHERKR-CISASMDTTIRIWDLENGELMYTL-----------------------  348 (464)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEETTTTE-EEEEETTSCEEEEETTTTEEEEEE-----------------------
T ss_pred             EEEECCCCcEEEEecCCCCCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCcEEEEE-----------------------
Confidence            99999999999999999999999999999885 789999999999999876544322                       


Q ss_pred             cccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCc
Q 013274          253 LSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSR  332 (446)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~  332 (446)
                                                                           .+|...|.+++|+  +.+|++|+.|++
T Consensus       349 -----------------------------------------------------~~h~~~v~~~~~~--~~~l~s~s~dg~  373 (464)
T 3v7d_B          349 -----------------------------------------------------QGHTALVGLLRLS--DKFLVSAAADGS  373 (464)
T ss_dssp             -----------------------------------------------------CCCSSCEEEEEEC--SSEEEEEETTSE
T ss_pred             -----------------------------------------------------eCCCCcEEEEEEc--CCEEEEEeCCCc
Confidence                                                                 2566779999997  589999999999


Q ss_pred             EEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEE-ecccccceEEEEEcCCCCEE
Q 013274          333 IRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLT-FRGHYEYVNCCCFSSQDQEL  411 (446)
Q Consensus       333 i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-l~gH~~~v~~~~fSpd~~~l  411 (446)
                      |++||+.++..... .    ........+++.+++.++++++.+.+++||+.+++.+.. +.+|.+.|++++|+ +..++
T Consensus       374 v~vwd~~~~~~~~~-~----~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~  447 (464)
T 3v7d_B          374 IRGWDANDYSRKFS-Y----HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLV  447 (464)
T ss_dssp             EEEEETTTCCEEEE-E----ECTTCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEE
T ss_pred             EEEEECCCCceeee-e----cCCCCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEE
Confidence            99999998653221 1    123344557788899999888888999999999998875 78999999999997 55667


Q ss_pred             EEeeCCCcEEEeCC
Q 013274          412 YTGGNDRQILVWCP  425 (446)
Q Consensus       412 vtgs~D~~v~vW~~  425 (446)
                      ++++.|+.+.+|.+
T Consensus       448 ~~~~~~g~~~i~~l  461 (464)
T 3v7d_B          448 AAVEKDGQSFLEIL  461 (464)
T ss_dssp             EEEEETTEEEEEEE
T ss_pred             EEEEeCCeEEEEEe
Confidence            77788888777754

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=3.6e-32  Score=269.74  Aligned_cols=285  Identities=21%  Similarity=0.334  Sum_probs=222.2

Q ss_pred             eEeCCCccce-eEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecC
Q 013274           37 EIVSPHKGSI-NSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (446)
Q Consensus        37 ~~~~~H~~~v-~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~  115 (446)
                      ..+.+|.+.| .++.++   +++|+||+.||+|++||+.++...                 ....+|...|.++.+.+ +
T Consensus       115 ~~l~~h~~~v~~~~~~~---~~~l~sgs~dg~i~vwd~~~~~~~-----------------~~~~~h~~~V~~l~~~~-~  173 (464)
T 3v7d_B          115 TTLRGHMTSVITCLQFE---DNYVITGADDKMIRVYDSINKKFL-----------------LQLSGHDGGVWALKYAH-G  173 (464)
T ss_dssp             EEEECCSSSCEEEEEEE---TTEEEEEETTSCEEEEETTTTEEE-----------------EEECCCSSCEEEEEECS-T
T ss_pred             EEEcCCCCCcEEEEEEC---CCEEEEEcCCCcEEEEECCCCcEE-----------------EEEeCCCcCEEEEEEcC-C
Confidence            4577898875 677774   469999999999999998765321                 12358999999999976 4


Q ss_pred             CcEEEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCce------------
Q 013274          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI------------  182 (446)
Q Consensus       116 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~------------  182 (446)
                      + ++++|+.|++|++||+.+++.+..+. +.+.+.++.+.+.. +..++++|+.|+.|++||++++..            
T Consensus       174 ~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~  251 (464)
T 3v7d_B          174 G-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK-NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL  251 (464)
T ss_dssp             T-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESS-SCEEEEEEETTSCEEEEECCCCCCC------CCSSE
T ss_pred             C-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCC-CCCEEEEEcCCCcEEEeeCCCCcccccccccCCcce
Confidence            4 99999999999999999999888776 45667888877542 346899999999999999987652            


Q ss_pred             -----------eeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeecc
Q 013274          183 -----------SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISK  251 (446)
Q Consensus       183 -----------~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (446)
                                 ...+.+|...|.++.  ++++ .+++++.||.|++||+++++++..+                      
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~----------------------  306 (464)
T 3v7d_B          252 VFHTPEENPYFVGVLRGHMASVRTVS--GHGN-IVVSGSYDNTLIVWDVAQMKCLYIL----------------------  306 (464)
T ss_dssp             EESCGGGCTTEEEEECCCSSCEEEEE--EETT-EEEEEETTSCEEEEETTTTEEEEEE----------------------
T ss_pred             EeeccCCCeEEEEEccCccceEEEEc--CCCC-EEEEEeCCCeEEEEECCCCcEEEEe----------------------
Confidence                       456788999999885  4556 4789999999999999876543322                      


Q ss_pred             ccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCC
Q 013274          252 SLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS  331 (446)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~  331 (446)
                                                                            .+|...|.+++|+|++.+|++|+.|+
T Consensus       307 ------------------------------------------------------~~~~~~v~~~~~~~~~~~l~sg~~dg  332 (464)
T 3v7d_B          307 ------------------------------------------------------SGHTDRIYSTIYDHERKRCISASMDT  332 (464)
T ss_dssp             ------------------------------------------------------CCCSSCEEEEEEETTTTEEEEEETTS
T ss_pred             ------------------------------------------------------cCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence                                                                  24667899999999999999999999


Q ss_pred             cEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEe-CCCceEEEEeecCceEEEecccccceEEEEEcCCCCE
Q 013274          332 RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVP-CMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQE  410 (446)
Q Consensus       332 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~  410 (446)
                      +|++||+.+++..    ..+..+......+.+.  +..++++ .+..+++||+.+++....+ .|...+..++|+|++++
T Consensus       333 ~i~vwd~~~~~~~----~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~  405 (464)
T 3v7d_B          333 TIRIWDLENGELM----YTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY-HHTNLSAITTFYVSDNI  405 (464)
T ss_dssp             CEEEEETTTTEEE----EEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE-ECTTCCCEEEEEECSSE
T ss_pred             cEEEEECCCCcEE----EEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee-cCCCCccEEEEEeCCCE
Confidence            9999999987532    1222223333444554  4566665 4568999999887765555 36777899999999999


Q ss_pred             EEEeeCCCcEEEeCCCCCCCC
Q 013274          411 LYTGGNDRQILVWCPSRHISD  431 (446)
Q Consensus       411 lvtgs~D~~v~vW~~~~~~~~  431 (446)
                      |++|+ |+.|+||++.++...
T Consensus       406 l~~~~-dg~i~iwd~~~g~~~  425 (464)
T 3v7d_B          406 LVSGS-ENQFNIYNLRSGKLV  425 (464)
T ss_dssp             EEEEE-TTEEEEEETTTCCEE
T ss_pred             EEEec-CCeEEEEECCCCcEE
Confidence            99999 999999999876543

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-34  Score=288.84  Aligned_cols=250  Identities=11%  Similarity=0.090  Sum_probs=186.8

Q ss_pred             CccceeEEEeecCC-C-------CEEEE-------------------eeCCCcEEEEEcccCcCCCCCCccccccceEEe
Q 013274           42 HKGSINSLQVDLTE-E-------RYLLS-------------------GASDSSVAVYDVQRATDYEGGGHIAKHRSVFVV   94 (446)
Q Consensus        42 H~~~v~~l~~s~~~-~-------~~l~s-------------------~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~   94 (446)
                      +.+.|++|+|+|++ +       ++||+                   +|.|++|+|||++++...          ...  
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~----------~~~--  199 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLH----------CVK--  199 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCC----------EEE--
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCC----------ceE--
Confidence            56789999998753 1       45555                   668899999998765321          000  


Q ss_pred             ccccccCccccEeEEEEeec-----CCcEEEEEeCCCeEEEEECCCCeee-----------EEEe-cCCceEEeeeccCC
Q 013274           95 DKQHEHGHKYAISSAIWYPV-----DTGLFVTGSYDHYVKVWDTNCTRVV-----------MNFK-MPGKVYRTAMSPLA  157 (446)
Q Consensus        95 ~~~~~~gh~~~V~~~~~~~~-----~~~~l~s~s~D~~i~iWd~~~~~~~-----------~~~~-~~~~~~~~~~~~~~  157 (446)
                       .....+|.+.|.++.|+|.     ++.+|||++.|++|++||+..+...           ..+. +.+.+.++++++. 
T Consensus       200 -~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-  277 (524)
T 2j04_B          200 -VQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-  277 (524)
T ss_dssp             -EEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-
T ss_pred             -EEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-
Confidence             0112357788999999984     3579999999999999999866421           1222 3356788888752 


Q ss_pred             CCceEEEEeeCCCcEEEEeCCCCc-eeeeeeCCCCCeEEE--EEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccc
Q 013274          158 ASHMLIAAGTEDVQVRLCDIASGA-ISQTLSGHRDGIMTV--EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQS  234 (446)
Q Consensus       158 ~~~~~lasgs~d~~v~vwd~~~~~-~~~~l~~h~~~v~sv--~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~  234 (446)
                         ..|++|+.|++|++||++++. +...+.+|.+.|.+|  .|+|++..+|+|||.|++|+|||++++.+...+     
T Consensus       278 ---~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~-----  349 (524)
T 2j04_B          278 ---TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTT-----  349 (524)
T ss_dssp             ---SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEE-----
T ss_pred             ---CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccc-----
Confidence               269999999999999999874 456789999999999  567776346899999999999999875432211     


Q ss_pred             cccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccc--cCe
Q 013274          235 QLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHY--GAV  312 (446)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v  312 (446)
                                                                                             .+|.  +.|
T Consensus       350 -----------------------------------------------------------------------~~~~~~~~v  358 (524)
T 2j04_B          350 -----------------------------------------------------------------------VSRFRGSNL  358 (524)
T ss_dssp             -----------------------------------------------------------------------EEECSCCSC
T ss_pred             -----------------------------------------------------------------------ccccccCcc
Confidence                                                                                   1222  247


Q ss_pred             EEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEe
Q 013274          313 TGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTF  392 (446)
Q Consensus       313 ~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l  392 (446)
                      .+|+|+|++..+++++.|++|++||+.++..                                             ..++
T Consensus       359 ~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~---------------------------------------------~~~l  393 (524)
T 2j04_B          359 VPVVYCPQIYSYIYSDGASSLRAVPSRAAFA---------------------------------------------VHPL  393 (524)
T ss_dssp             CCEEEETTTTEEEEECSSSEEEEEETTCTTC---------------------------------------------CEEE
T ss_pred             cceEeCCCcCeEEEeCCCCcEEEEECccccc---------------------------------------------ceee
Confidence            7899999999999999999999999876431                                             2345


Q ss_pred             cccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCC
Q 013274          393 RGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI  429 (446)
Q Consensus       393 ~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~  429 (446)
                      .+|.+.|++|+|||++++|+|||.|++|+||++....
T Consensus       394 ~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~  430 (524)
T 2j04_B          394 VSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRL  430 (524)
T ss_dssp             EECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSST
T ss_pred             ecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhh
Confidence            6899999999999999999999999999999987543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.7e-32  Score=270.14  Aligned_cols=272  Identities=21%  Similarity=0.348  Sum_probs=213.3

Q ss_pred             CCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEE
Q 013274           40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF  119 (446)
Q Consensus        40 ~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l  119 (446)
                      .+|...|++++|   ++++|++|+.||+|++||++++...                 ....+|...|.++.+   ++++|
T Consensus       130 ~~~~~~v~~~~~---d~~~l~~g~~dg~i~iwd~~~~~~~-----------------~~~~~h~~~v~~l~~---~~~~l  186 (435)
T 1p22_A          130 SETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECK-----------------RILTGHTGSVLCLQY---DERVI  186 (435)
T ss_dssp             CSSCCCEEEEEC---CSSEEEEEESSSCEEEEESSSCCEE-----------------EEECCCSSCEEEEEC---CSSEE
T ss_pred             cCCCCcEEEEEE---CCCEEEEEeCCCeEEEEeCCCCeEE-----------------EEEcCCCCcEEEEEE---CCCEE
Confidence            467788999988   4679999999999999998765421                 123589999998876   67899


Q ss_pred             EEEeCCCeEEEEECCCCeeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCcee---eeeeCCCCCeEE
Q 013274          120 VTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAIS---QTLSGHRDGIMT  195 (446)
Q Consensus       120 ~s~s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~---~~l~~h~~~v~s  195 (446)
                      ++|+.|++|++||+.+++.+..+.. .+.+.++.+.+     ..+++|+.|+.|++||++++...   ..+.+|...|.+
T Consensus       187 ~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~-----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~  261 (435)
T 1p22_A          187 ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN-----GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV  261 (435)
T ss_dssp             EEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT-----TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEE
T ss_pred             EEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC-----CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEE
Confidence            9999999999999999988877753 44566666643     37899999999999999988655   678899999999


Q ss_pred             EEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCc
Q 013274          196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNG  275 (446)
Q Consensus       196 v~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (446)
                      +.|  +++ .+++|+.||+|++||++++.++..+                                              
T Consensus       262 ~~~--~~~-~l~s~~~dg~i~vwd~~~~~~~~~~----------------------------------------------  292 (435)
T 1p22_A          262 VDF--DDK-YIVSASGDRTIKVWNTSTCEFVRTL----------------------------------------------  292 (435)
T ss_dssp             EEE--ETT-EEEEEETTSEEEEEETTTCCEEEEE----------------------------------------------
T ss_pred             EEe--CCC-EEEEEeCCCeEEEEECCcCcEEEEE----------------------------------------------
Confidence            999  445 4789999999999999876543322                                              


Q ss_pred             eeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeec
Q 013274          276 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT  355 (446)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~  355 (446)
                                                    .+|...|.++.|  ++.+|++|+.|++|++||+.+++...    .+..+.
T Consensus       293 ------------------------------~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~----~~~~h~  336 (435)
T 1p22_A          293 ------------------------------NGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLR----VLEGHE  336 (435)
T ss_dssp             ------------------------------ECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEE----EECCCS
T ss_pred             ------------------------------cCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEE----EEeCCc
Confidence                                          245667888888  47899999999999999999875321    122222


Q ss_pred             CCCeEEEEcCCCcEEEEeC-CCceEEEEeecCc---------eEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCC
Q 013274          356 SKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGK---------TCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP  425 (446)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~---------~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~  425 (446)
                      .....+++  ++..+++++ .+.+++||+.+++         .+..+.+|.+.|++++|  |+++|+||+.|++|++|++
T Consensus       337 ~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~  412 (435)
T 1p22_A          337 ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDF  412 (435)
T ss_dssp             SCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-
T ss_pred             CcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEEC
Confidence            23333444  666776665 4689999998766         78899999999999999  8899999999999999998


Q ss_pred             CCC
Q 013274          426 SRH  428 (446)
Q Consensus       426 ~~~  428 (446)
                      ...
T Consensus       413 ~~~  415 (435)
T 1p22_A          413 LND  415 (435)
T ss_dssp             ---
T ss_pred             CCC
Confidence            754

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-32  Score=293.84  Aligned_cols=367  Identities=16%  Similarity=0.172  Sum_probs=236.7

Q ss_pred             CCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEec----c-ccccCccccEeEEEEeecC
Q 013274           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVD----K-QHEHGHKYAISSAIWYPVD  115 (446)
Q Consensus        41 ~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~gh~~~V~~~~~~~~~  115 (446)
                      .|.+.|++++|+| ++++|++|+.||+|++||++++....           +...    . ....+|.+.|.++.|+|.+
T Consensus        96 ~~~~~V~~v~~sp-~g~~l~sgs~dg~V~lwd~~~~~~~~-----------~~i~~~~~~~~~~~~h~~~V~sl~~sp~~  163 (902)
T 2oaj_A           96 FVPGKITSIDTDA-SLDWMLIGLQNGSMIVYDIDRDQLSS-----------FKLDNLQKSSFFPAARLSPIVSIQWNPRD  163 (902)
T ss_dssp             ECSSCEEEEECCT-TCSEEEEEETTSCEEEEETTTTEEEE-----------EEECCHHHHHTCSSSCCCCCCEEEEETTE
T ss_pred             cCCCCEEEEEECC-CCCEEEEEcCCCcEEEEECCCCcccc-----------ceeccccccccccccCCCCeEEEEEccCC
Confidence            3678999999997 67899999999999999997653210           0000    0 2236899999999999866


Q ss_pred             CcEEEEEeCCCeEEEEECCCCeeeEEEecC-------------------CceEEeeeccCCCCceEEEEeeCCCcEEEEe
Q 013274          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-------------------GKVYRTAMSPLAASHMLIAAGTEDVQVRLCD  176 (446)
Q Consensus       116 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd  176 (446)
                      +.++++|+.|++| +||+.+++++..+...                   ..+.+++|+|+   ..+|++|+.|+.|++||
T Consensus       164 ~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspd---g~~lasgs~Dg~i~lWd  239 (902)
T 2oaj_A          164 IGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPN---SLHIITIHEDNSLVFWD  239 (902)
T ss_dssp             EEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTT---SSEEEEEETTCCEEEEE
T ss_pred             CCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCC---CCEEEEEECCCeEEEEE
Confidence            7799999999999 9999999888777643                   45888999885   45899999999999999


Q ss_pred             CCCCceeee--e---eC-------------CCCCeEEEEEec----CCCeEEEEeeCC-----CcEEEEEcc--------
Q 013274          177 IASGAISQT--L---SG-------------HRDGIMTVEWST----SSEWILVTGGCD-----GAIRFWDIR--------  221 (446)
Q Consensus       177 ~~~~~~~~~--l---~~-------------h~~~v~sv~~s~----~~~~~l~S~s~D-----g~I~iWd~~--------  221 (446)
                      +++++++..  +   ..             |.+.|.+++|++    ++..++++|+.|     ..+++|++.        
T Consensus       240 ~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~  319 (902)
T 2oaj_A          240 ANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSIT  319 (902)
T ss_dssp             TTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGC
T ss_pred             CCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCcccc
Confidence            999887542  3   12             355799999964    334567888776     379999852        


Q ss_pred             ----------CCceeEEeec-cccc--------------ccCC-Cc-ccc----cceeeccccccCC--CC--------C
Q 013274          222 ----------RAGCFRVLDQ-SQSQ--------------LGRR-PP-LLK----RKVSISKSLSAGQ--NS--------S  260 (446)
Q Consensus       222 ----------~~~~~~~~~~-~~~~--------------~~~~-~~-~~~----~~~~~~~~~~~~~--~~--------~  260 (446)
                                ...+.+.+.. ....              .+.. +. ++.    ..+.. ..+....  ..        .
T Consensus       320 s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~-~~~~~g~~~~~~~~~~~~l~  398 (902)
T 2oaj_A          320 SYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIET-MLYPSGIFTDKASLFPQNLS  398 (902)
T ss_dssp             CHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEE-EETTTCCEECCGGGSCGGGT
T ss_pred             chhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEE-EECCCCCcccccccCCCccc
Confidence                      1122222210 0000              0000 00 000    00000 0000000  00        0


Q ss_pred             cCC--------------------------CC-ccccccCCCceeecccceeecCCccccccCCCcccccc-----c----
Q 013274          261 VKP--------------------------RA-PQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQD-----R----  304 (446)
Q Consensus       261 ~~~--------------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----  304 (446)
                      .+.                          .. ..........+..++.+...+.+..+..+..+......     .    
T Consensus       399 ~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~  478 (902)
T 2oaj_A          399 WLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVN  478 (902)
T ss_dssp             TBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEE
T ss_pred             ccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEee
Confidence            000                          00 00000001123344555555554433322211111000     0    


Q ss_pred             c-----cccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCcee-----------------------------------
Q 013274          305 A-----TAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNT-----------------------------------  344 (446)
Q Consensus       305 ~-----~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~-----------------------------------  344 (446)
                      .     .+|...|.+|+|+|||++||+|+.|++|+|||+.+++..                                   
T Consensus       479 l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  558 (902)
T 2oaj_A          479 LSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAP  558 (902)
T ss_dssp             HHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCC
T ss_pred             chhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCC
Confidence            0     178889999999999999999999999999999875310                                   


Q ss_pred             ------eeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEE-----Eec-ccccceEEEEEc-----C
Q 013274          345 ------LVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCL-----TFR-GHYEYVNCCCFS-----S  406 (446)
Q Consensus       345 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~-----~l~-gH~~~v~~~~fS-----p  406 (446)
                            +..+..+..+......++++|++ ++++++. ..+++||+.++..+.     .+. +|.+.|++|+||     |
T Consensus       559 ~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~  637 (902)
T 2oaj_A          559 TGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGD  637 (902)
T ss_dssp             TTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTT
T ss_pred             CCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCC
Confidence                  00112223344566778999999 8887765 568999987776543     343 999999999999     8


Q ss_pred             CC---CEEEEeeCCCcEEEeCC
Q 013274          407 QD---QELYTGGNDRQILVWCP  425 (446)
Q Consensus       407 d~---~~lvtgs~D~~v~vW~~  425 (446)
                      ||   ++|++|+.|++|++|++
T Consensus       638 Dg~~~~~l~sgs~D~tv~~wd~  659 (902)
T 2oaj_A          638 DGYSSILMVCGTDMGEVITYKI  659 (902)
T ss_dssp             SSSEEEEEEEEETTSEEEEEEE
T ss_pred             CCCcceEEEEEecCCcEEEEEE
Confidence            85   89999999999999998

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=6.3e-33  Score=307.26  Aligned_cols=367  Identities=18%  Similarity=0.225  Sum_probs=254.6

Q ss_pred             EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeec-CC
Q 013274           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV-DT  116 (446)
Q Consensus        38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~-~~  116 (446)
                      .+.+|.+.|++++|+| ++++|++|+.|++|+|||+.++...                 ....+|...|.++.++|. +.
T Consensus       652 ~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~-----------------~~~~~~~~~v~~~~~~~~~~~  713 (1249)
T 3sfz_A          652 DIKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSATGKLV-----------------HTYDEHSEQVNCCHFTNKSNH  713 (1249)
T ss_dssp             EECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEE-----------------EEEECCSSCEEEEEECSSSSC
T ss_pred             EeccCCCCEEEEEEec-CCCEEEEEeCCCeEEEEECCCCceE-----------------EEEcCCCCcEEEEEEecCCCc
Confidence            4678999999999997 6789999999999999999875421                 123479999999999874 45


Q ss_pred             cEEEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeee---------
Q 013274          117 GLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL---------  186 (446)
Q Consensus       117 ~~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l---------  186 (446)
                      .++++|+.|++|++||+.++.++..+. +.+.+.++++++.   ..++++++.|+.|++||+.++.....+         
T Consensus       714 ~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~---~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~  790 (1249)
T 3sfz_A          714 LLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPD---DELLASCSADGTLRLWDVRSANERKSINVKRFFLSS  790 (1249)
T ss_dssp             CEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSS---TTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC---
T ss_pred             eEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecC---CCEEEEEECCCeEEEEeCCCCcccceeccccccccc
Confidence            589999999999999999998877665 4556788888874   348999999999999998776433221         


Q ss_pred             ----------------------------------------------eCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEc
Q 013274          187 ----------------------------------------------SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDI  220 (446)
Q Consensus       187 ----------------------------------------------~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~  220 (446)
                                                                    .+|...|.+++|+|+++. +++++.||.|++||+
T Consensus       791 ~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~~dg~v~vwd~  869 (1249)
T 3sfz_A          791 EDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHL-AVIALSQYCVELWNI  869 (1249)
T ss_dssp             -----CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTE-EEEECSSSCEEEEET
T ss_pred             CCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCE-EEEEeCCCeEEEEEc
Confidence                                                          278889999999999885 789999999999999


Q ss_pred             cCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCC------------CCcc--c------------------
Q 013274          221 RRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKP------------RAPQ--K------------------  268 (446)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~--~------------------  268 (446)
                      .++.+...+..+...+............    .+.........            ....  .                  
T Consensus       870 ~~~~~~~~~~~h~~~v~~v~~spdg~~l----~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  945 (1249)
T 3sfz_A          870 DSRLKVADCRGHLSWVHGVMFSPDGSSF----LTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRG  945 (1249)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTSSEE----EEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSS
T ss_pred             CCCceeeecCCCccceEEEEECCCCCEE----EEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcc
Confidence            9988777665433221100000000000    00000000000            0000  0                  


Q ss_pred             --------------cccCCCceeecccceeecCCccccccC---CCcccccccccccccCeEEEEEccCCCEEEEeecCC
Q 013274          269 --------------RSANGNGVRQSSVGRIPAKGSVRQRLH---PGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS  331 (446)
Q Consensus       269 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~  331 (446)
                                    .......+..++.+...+.+.....+.   ...........+|.+.|++++|+|+|++|++++.|+
T Consensus       946 ~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg 1025 (1249)
T 3sfz_A          946 LQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDS 1025 (1249)
T ss_dssp             EEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSS
T ss_pred             eEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCC
Confidence                          000000112222222222111111110   000011122457899999999999999999999999


Q ss_pred             cEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEE
Q 013274          332 RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQEL  411 (446)
Q Consensus       332 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~l  411 (446)
                      +|++||+.+++...     ...+......+.+.+++.++.......+++||+.+++....+.+|.+.|++++|+||+++|
T Consensus      1026 ~i~vwd~~~~~~~~-----~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 1100 (1249)
T 3sfz_A         1026 VIQVWNWQTGDYVF-----LQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKF 1100 (1249)
T ss_dssp             BEEEEETTTTEEEC-----CBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSC
T ss_pred             EEEEEECCCCceEE-----EecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEE
Confidence            99999999875321     1122344556778888777777777899999999999999999999999999999999999


Q ss_pred             EEeeCCCcEEEeCCCCCCCCCcCC
Q 013274          412 YTGGNDRQILVWCPSRHISDGVDA  435 (446)
Q Consensus       412 vtgs~D~~v~vW~~~~~~~~~~~~  435 (446)
                      ++++.|++|++|+...........
T Consensus      1101 ~s~s~d~~v~iwd~~~~~~~~~l~ 1124 (1249)
T 3sfz_A         1101 SSTSADKTAKIWSFDLLSPLHELK 1124 (1249)
T ss_dssp             EEECCSSCCCEECSSSSSCSBCCC
T ss_pred             EEEcCCCcEEEEECCCcceeeeec
Confidence            999999999999998665443433

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.2e-33  Score=267.26  Aligned_cols=260  Identities=19%  Similarity=0.317  Sum_probs=203.2

Q ss_pred             eEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeec-C
Q 013274           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV-D  115 (446)
Q Consensus        37 ~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~-~  115 (446)
                      .++.+|.+.|++|+|+| ++++|++|+.||+|+|||+.....          ..     .....+|...|.++.|++. +
T Consensus         5 ~~~~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~----------~~-----~~~~~~h~~~v~~~~~~~~~~   68 (379)
T 3jrp_A            5 VIANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETH----------KL-----IDTLTGHEGPVWRVDWAHPKF   68 (379)
T ss_dssp             CCEEECCCCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEE----------EE-----EEEECCCSSCEEEEEECCGGG
T ss_pred             EEecCCcccEEEEEEcC-CCCEEEEEECCCcEEEEecCCCcc----------ee-----eeEecCCCCcEEEEEeCCCCC
Confidence            34679999999999997 678999999999999999873221          00     1123589999999999753 3


Q ss_pred             CcEEEEEeCCCeEEEEECCCCe--eeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc--eeeeeeCCC
Q 013274          116 TGLFVTGSYDHYVKVWDTNCTR--VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA--ISQTLSGHR  190 (446)
Q Consensus       116 ~~~l~s~s~D~~i~iWd~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~--~~~~l~~h~  190 (446)
                      +.+|++|+.|++|++||+.+++  .+..+. +...+.++++++... ..++++++.|+.|++||++++.  ....+.+|.
T Consensus        69 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~  147 (379)
T 3jrp_A           69 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEY-GPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA  147 (379)
T ss_dssp             CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGG-CSEEEEEETTSEEEEEECCTTSCCCEEEEECCT
T ss_pred             CCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCC-CCEEEEecCCCcEEEEecCCCCceeeEEecCCC
Confidence            7899999999999999999886  444443 445688888887521 3589999999999999999873  445678999


Q ss_pred             CCeEEEEEec-------------CCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCC
Q 013274          191 DGIMTVEWST-------------SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQ  257 (446)
Q Consensus       191 ~~v~sv~~s~-------------~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (446)
                      ..|.++.|+|             ++. .|++++.||.|++||++++.....+                            
T Consensus       148 ~~v~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~----------------------------  198 (379)
T 3jrp_A          148 IGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVL----------------------------  198 (379)
T ss_dssp             TCEEEEEECCCC----------CTTC-EEEEEETTSCEEEEEEETTTTEEEE----------------------------
T ss_pred             CceEEEEEcCccccccccccCCCCCC-EEEEEeCCCeEEEEEecCCCcceee----------------------------
Confidence            9999999999             465 5789999999999999764321100                            


Q ss_pred             CCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccC---CCEEEEeecCCcEE
Q 013274          258 NSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED---GMYLLSAGSDSRIR  334 (446)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~d---g~~l~sgs~D~~i~  334 (446)
                                                                  .....+|.++|.+++|+|+   +.+|++++.|+.|+
T Consensus       199 --------------------------------------------~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~  234 (379)
T 3jrp_A          199 --------------------------------------------ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI  234 (379)
T ss_dssp             --------------------------------------------EEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEE
T ss_pred             --------------------------------------------EEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEE
Confidence                                                        0012367788999999999   89999999999999


Q ss_pred             EEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEe
Q 013274          335 LWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTG  414 (446)
Q Consensus       335 lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtg  414 (446)
                      +||+.++......                                        .......|...|++++|+||+++|+++
T Consensus       235 iwd~~~~~~~~~~----------------------------------------~~~~~~~~~~~v~~~~~s~~g~~l~~~  274 (379)
T 3jrp_A          235 IWTQDNEQGPWKK----------------------------------------TLLKEEKFPDVLWRASWSLSGNVLALS  274 (379)
T ss_dssp             EEEESSTTSCCEE----------------------------------------EESSSSCCSSCEEEEEECSSSCCEEEE
T ss_pred             EEeCCCCCcccee----------------------------------------eeeccccCCCcEEEEEEcCCCCEEEEe
Confidence            9999875321100                                        001123488899999999999999999


Q ss_pred             eCCCcEEEeCCC
Q 013274          415 GNDRQILVWCPS  426 (446)
Q Consensus       415 s~D~~v~vW~~~  426 (446)
                      +.|+.|++|+++
T Consensus       275 ~~dg~i~iw~~~  286 (379)
T 3jrp_A          275 GGDNKVTLWKEN  286 (379)
T ss_dssp             ESSSSEEEEEEE
T ss_pred             cCCCcEEEEeCC
Confidence            999999999886

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=7.2e-33  Score=262.94  Aligned_cols=285  Identities=12%  Similarity=0.085  Sum_probs=225.5

Q ss_pred             EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (446)
Q Consensus        38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~  117 (446)
                      +..+|.+.|++++|+| ++++|++|+.|++|+|||+.++...         ...     ....+|...|.++.++| ++.
T Consensus         6 ~~~~h~~~v~~~~~s~-~~~~l~~~~~d~~v~iw~~~~~~~~---------~~~-----~~~~~~~~~v~~~~~~~-~~~   69 (342)
T 1yfq_A            6 IEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKN---------VDL-----LQSLRYKHPLLCCNFID-NTD   69 (342)
T ss_dssp             CSSCCSSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTE---------EEE-----EEEEECSSCEEEEEEEE-SSS
T ss_pred             cccCCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEeCCCCcc---------ccc-----eeeeecCCceEEEEECC-CCC
Confidence            4568999999999997 5789999999999999999765310         000     11237889999999998 688


Q ss_pred             -EEEEEeCCCeEEEEEC-CCCeeeEEEe--cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCC---------Cceee
Q 013274          118 -LFVTGSYDHYVKVWDT-NCTRVVMNFK--MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS---------GAISQ  184 (446)
Q Consensus       118 -~l~s~s~D~~i~iWd~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~---------~~~~~  184 (446)
                       +|++|+.|++|++||+ .+++......  +.+.+..+.+.+    ..++++++.|+.|++||+++         ++++.
T Consensus        70 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~----~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~  145 (342)
T 1yfq_A           70 LQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG----DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN  145 (342)
T ss_dssp             EEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET----TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS
T ss_pred             cEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC----CCEEEEEcCCCeEEEEcccccccccccccCCeee
Confidence             9999999999999999 8876644333  556688888887    24789999999999999988         77777


Q ss_pred             eeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccC-CceeEEeecccccccCCCcccccceeeccccccCCCCCcCC
Q 013274          185 TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR-AGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKP  263 (446)
Q Consensus       185 ~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (446)
                      .+. |...|.+++|+|++   +++++.|+.|++||+++ ......                                   
T Consensus       146 ~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~-----------------------------------  186 (342)
T 1yfq_A          146 NTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGT-----------------------------------  186 (342)
T ss_dssp             SSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCCE-----------------------------------
T ss_pred             EEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccce-----------------------------------
Confidence            776 89999999999874   68999999999999875 321000                                   


Q ss_pred             CCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEcc-CCCEEEEeecCCcEEEEecCcC-
Q 013274          264 RAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE-DGMYLLSAGSDSRIRLWDVESG-  341 (446)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~sgs~D~~i~lWd~~~~-  341 (446)
                                                             .....|...|.+++|+| ++.+|++++.|+.|++|++... 
T Consensus       187 ---------------------------------------~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~  227 (342)
T 1yfq_A          187 ---------------------------------------IEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG  227 (342)
T ss_dssp             ---------------------------------------EEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTC
T ss_pred             ---------------------------------------eeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCC
Confidence                                                   00123556799999999 9999999999999999999875 


Q ss_pred             ----ceeeeeeeEEEeecC---------CCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEeccc-ccceEEEEEcC
Q 013274          342 ----RNTLVNFETVRLQTS---------KPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGH-YEYVNCCCFSS  406 (446)
Q Consensus       342 ----~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH-~~~v~~~~fSp  406 (446)
                          ......+   ..+..         ....++++|++.++++++. ..+++||+.+++.+.++.+| .+.|++++  |
T Consensus       228 ~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~  302 (342)
T 1yfq_A          228 DDYNSSKRFAF---RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--C  302 (342)
T ss_dssp             CSTTCTTCEEE---ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--E
T ss_pred             cccccccceee---ecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--C
Confidence                1111112   22211         4556788998888777654 58999999999999999999 99999999  9


Q ss_pred             CCCEEEEeeCCCc-EEEeCC
Q 013274          407 QDQELYTGGNDRQ-ILVWCP  425 (446)
Q Consensus       407 d~~~lvtgs~D~~-v~vW~~  425 (446)
                      |+++|++|+.|++ .+.|..
T Consensus       303 ~~~~l~s~s~Dg~~~~~~~~  322 (342)
T 1yfq_A          303 SDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             CSSEEEEEEECTHHHHCSSS
T ss_pred             CCCeEEEEecCCcccccccc
Confidence            9999999999999 777764

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.9e-31  Score=263.23  Aligned_cols=277  Identities=23%  Similarity=0.411  Sum_probs=219.0

Q ss_pred             eEeCCCccce-eEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecC
Q 013274           37 EIVSPHKGSI-NSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (446)
Q Consensus        37 ~~~~~H~~~v-~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~  115 (446)
                      .++.+|.+.| .++.++   +++|++|+.||+|++||+.++...                 ....+|...|.++.+.   
T Consensus       112 ~~l~~h~~~v~~~~~~~---g~~l~sg~~dg~i~vwd~~~~~~~-----------------~~~~~h~~~v~~~~~~---  168 (445)
T 2ovr_B          112 KVLKGHDDHVITCLQFC---GNRIVSGSDDNTLKVWSAVTGKCL-----------------RTLVGHTGGVWSSQMR---  168 (445)
T ss_dssp             EEEECSTTSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEE-----------------EECCCCSSCEEEEEEE---
T ss_pred             EEecccCCCcEEEEEEc---CCEEEEEECCCcEEEEECCCCcEE-----------------EEEcCCCCCEEEEEec---
Confidence            4578999875 666653   679999999999999999765421                 1235899999998885   


Q ss_pred             CcEEEEEeCCCeEEEEECCCCeeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeE
Q 013274          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM  194 (446)
Q Consensus       116 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~  194 (446)
                      +.++++|+.|++|++||+.+++.+..+.. .+.+.++.+.     ...+++|+.|+.|++||+++++.+..+.+|...|.
T Consensus       169 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-----~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~  243 (445)
T 2ovr_B          169 DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH-----EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR  243 (445)
T ss_dssp             TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE-----TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEE
T ss_pred             CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec-----CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEE
Confidence            56999999999999999999988877763 4456666663     24689999999999999999999999999999999


Q ss_pred             EEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCC
Q 013274          195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGN  274 (446)
Q Consensus       195 sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (446)
                      ++.|  +++. +++|+.||.|++||++++.++..+                                             
T Consensus       244 ~~~~--~~~~-l~~~~~dg~i~iwd~~~~~~~~~~---------------------------------------------  275 (445)
T 2ovr_B          244 CVQY--DGRR-VVSGAYDFMVKVWDPETETCLHTL---------------------------------------------  275 (445)
T ss_dssp             EEEE--CSSC-EEEEETTSCEEEEEGGGTEEEEEE---------------------------------------------
T ss_pred             EEEE--CCCE-EEEEcCCCEEEEEECCCCcEeEEe---------------------------------------------
Confidence            9999  4554 789999999999999876543322                                             


Q ss_pred             ceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEee
Q 013274          275 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQ  354 (446)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~  354 (446)
                                                     .+|.+.|.++.|  ++.++++|+.|++|++||+.+++...    .+..+
T Consensus       276 -------------------------------~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~----~~~~~  318 (445)
T 2ovr_B          276 -------------------------------QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIH----TLTGH  318 (445)
T ss_dssp             -------------------------------CCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEE----EECCC
T ss_pred             -------------------------------cCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEE----EEcCC
Confidence                                           246677999998  88999999999999999999875321    11111


Q ss_pred             cCCCeEEEEcCCCcEEEEeC-CCceEEEEeecCceEEEecc---cccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCCC
Q 013274          355 TSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRG---HYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS  430 (446)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~l~g---H~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~~  430 (446)
                      .....  ...+++..+++++ .+.+++||+.+++....+.+   |...|++++|+  +++|++|+.|++|++|++..+..
T Consensus       319 ~~~v~--~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~  394 (445)
T 2ovr_B          319 QSLTS--GMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEF  394 (445)
T ss_dssp             CSCEE--EEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCE
T ss_pred             cccEE--EEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCce
Confidence            22222  3333455666654 56899999999999999987   89999999995  68999999999999999986653

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.1e-32  Score=258.67  Aligned_cols=282  Identities=18%  Similarity=0.244  Sum_probs=223.3

Q ss_pred             CccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEE
Q 013274           42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT  121 (446)
Q Consensus        42 H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s  121 (446)
                      |.+.|++++|+| ++++++++..++.+.+|+.....           +.+      ...+|...|.++.++| +++++++
T Consensus         8 ~~~~v~~~~~s~-dg~~~~~~~~~~~~~~~~~~~~~-----------~~~------~~~~h~~~v~~~~~~~-~~~~l~~   68 (337)
T 1gxr_A            8 GSKPAYSFHVTA-DGQMQPVPFPPDALIGPGIPRHA-----------RQI------NTLNHGEVVCAVTISN-PTRHVYT   68 (337)
T ss_dssp             EEEECCEEEECS-SSCEEECCCCTTSSSSTTCCSEE-----------EEE------EEECCSSCCCEEEECS-SSSEEEE
T ss_pred             cCCceeEEEECC-CCCEEEeecCCCcEeccccCCcc-----------ccc------eeccCCCceEEEEEec-CCcEEEE
Confidence            567899999997 67889888877777666433211           000      1137899999999987 7889999


Q ss_pred             EeCCCeEEEEECCCCee---eEEE---ecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc--eeeeeeCCCCCe
Q 013274          122 GSYDHYVKVWDTNCTRV---VMNF---KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA--ISQTLSGHRDGI  193 (446)
Q Consensus       122 ~s~D~~i~iWd~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~--~~~~l~~h~~~v  193 (446)
                      ++ |++|++||+.++..   +..+   ...+.+.++++++.   ..++++++.|+.|++||+++++  ....+.+|...|
T Consensus        69 ~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i  144 (337)
T 1gxr_A           69 GG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD---GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC  144 (337)
T ss_dssp             EC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT---SSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred             cC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCC---CCEEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence            99 99999999987643   2222   24556788888874   4588999999999999999887  567788999999


Q ss_pred             EEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCC
Q 013274          194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANG  273 (446)
Q Consensus       194 ~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (446)
                      .+++|+|+++. +++++.||.|++||+++++....+                                            
T Consensus       145 ~~~~~~~~~~~-l~~~~~dg~v~~~d~~~~~~~~~~--------------------------------------------  179 (337)
T 1gxr_A          145 YALAISPDSKV-CFSCCSDGNIAVWDLHNQTLVRQF--------------------------------------------  179 (337)
T ss_dssp             EEEEECTTSSE-EEEEETTSCEEEEETTTTEEEEEE--------------------------------------------
T ss_pred             EEEEECCCCCE-EEEEeCCCcEEEEeCCCCceeeee--------------------------------------------
Confidence            99999999875 789999999999999875433221                                            


Q ss_pred             CceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEe
Q 013274          274 NGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRL  353 (446)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~  353 (446)
                                                      .+|.+.|.+++|+|++.+|++++.|+.|++||+.+++....    . .
T Consensus       180 --------------------------------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~----~-~  222 (337)
T 1gxr_A          180 --------------------------------QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ----H-D  222 (337)
T ss_dssp             --------------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE----E-E
T ss_pred             --------------------------------ecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEee----e-c
Confidence                                            24567799999999999999999999999999998753211    1 1


Q ss_pred             ecCCCeEEEEcCCCcEEEEeC-CCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCC
Q 013274          354 QTSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI  429 (446)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~  429 (446)
                      .......++++|++..+++++ ...+++|++.+++. ..+.+|...|.+++|+||+++|++++.|+.|++|+++...
T Consensus       223 ~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~  298 (337)
T 1gxr_A          223 FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA  298 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCe
Confidence            234456788899988887765 46899999987765 5788999999999999999999999999999999987654

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.5e-32  Score=258.84  Aligned_cols=249  Identities=18%  Similarity=0.232  Sum_probs=197.5

Q ss_pred             ccCccc-cEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEE----ecCCceEEeeeccCCCCceEEEEeeCCCcEE
Q 013274           99 EHGHKY-AISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNF----KMPGKVYRTAMSPLAASHMLIAAGTEDVQVR  173 (446)
Q Consensus        99 ~~gh~~-~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~  173 (446)
                      ..+|.. .|+++.|+| ++++||||+.|++|+|||+.++......    .+.+.+.+++++|.   ..+|++|+.|+.|+
T Consensus        11 ~~~h~~~~v~~l~~sp-~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~---g~~l~s~s~D~~v~   86 (345)
T 3fm0_A           11 VPAHPDSRCWFLAWNP-AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPC---GNYLASASFDATTC   86 (345)
T ss_dssp             ECCSTTSCEEEEEECT-TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTT---SSEEEEEETTSCEE
T ss_pred             ecCCCCCcEEEEEECC-CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCC---CCEEEEEECCCcEE
Confidence            357887 899999987 8899999999999999999887644322    23456888899885   45899999999999


Q ss_pred             EEeCCCCc--eeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeecc
Q 013274          174 LCDIASGA--ISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISK  251 (446)
Q Consensus       174 vwd~~~~~--~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (446)
                      +||++++.  .+..+.+|.+.|.+++|+|+++. |+||+.|++|++||++.......+                      
T Consensus        87 iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~-l~s~s~D~~v~iwd~~~~~~~~~~----------------------  143 (345)
T 3fm0_A           87 IWKKNQDDFECVTTLEGHENEVKSVAWAPSGNL-LATCSRDKSVWVWEVDEEDEYECV----------------------  143 (345)
T ss_dssp             EEEECCC-EEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEEECTTSCEEEE----------------------
T ss_pred             EEEccCCCeEEEEEccCCCCCceEEEEeCCCCE-EEEEECCCeEEEEECCCCCCeEEE----------------------
Confidence            99998774  57789999999999999999885 799999999999998754211110                      


Q ss_pred             ccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCC
Q 013274          252 SLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS  331 (446)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~  331 (446)
                                                                         ....+|...|.+++|+|++.+|++|+.|+
T Consensus       144 ---------------------------------------------------~~~~~h~~~v~~~~~~p~~~~l~s~s~d~  172 (345)
T 3fm0_A          144 ---------------------------------------------------SVLNSHTQDVKHVVWHPSQELLASASYDD  172 (345)
T ss_dssp             ---------------------------------------------------EEECCCCSCEEEEEECSSSSCEEEEETTS
T ss_pred             ---------------------------------------------------EEecCcCCCeEEEEECCCCCEEEEEeCCC
Confidence                                                               01235778899999999999999999999


Q ss_pred             cEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecC---------------ceEEEecc-
Q 013274          332 RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSG---------------KTCLTFRG-  394 (446)
Q Consensus       332 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~---------------~~~~~l~g-  394 (446)
                      +|++||+.++....  ...+..+......++++|++..+++++. ..+++|+....               +.+.++.+ 
T Consensus       173 ~i~~w~~~~~~~~~--~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (345)
T 3fm0_A          173 TVKLYREEEDDWVC--CATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGF  250 (345)
T ss_dssp             CEEEEEEETTEEEE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSS
T ss_pred             cEEEEEecCCCEEE--EEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCC
Confidence            99999988754221  1222333455667899999998888754 68999997432               23445665 


Q ss_pred             cccceEEEEEcCCCCEEEEeeCCCcEEEeCCCC
Q 013274          395 HYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR  427 (446)
Q Consensus       395 H~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~  427 (446)
                      |...|++++|+|++..|++++.|++|++|+.+.
T Consensus       251 h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~  283 (345)
T 3fm0_A          251 HSRTIYDIAWCQLTGALATACGDDAIRVFQEDP  283 (345)
T ss_dssp             CSSCEEEEEECTTTCCEEEEETTSCEEEEEECT
T ss_pred             CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCC
Confidence            999999999999999999999999999998754

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2.4e-31  Score=262.52  Aligned_cols=278  Identities=21%  Similarity=0.343  Sum_probs=218.9

Q ss_pred             EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (446)
Q Consensus        38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~  117 (446)
                      .+.+|.+.|++++|+   +.+|++|+.||+|++||++++...                 ....+|...|.++.+.   ++
T Consensus       154 ~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~-----------------~~~~~h~~~v~~~~~~---~~  210 (445)
T 2ovr_B          154 TLVGHTGGVWSSQMR---DNIIISGSTDRTLKVWNAETGECI-----------------HTLYGHTSTVRCMHLH---EK  210 (445)
T ss_dssp             ECCCCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTTEEE-----------------EEECCCSSCEEEEEEE---TT
T ss_pred             EEcCCCCCEEEEEec---CCEEEEEeCCCeEEEEECCcCcEE-----------------EEECCCCCcEEEEEec---CC
Confidence            467899999999997   368999999999999999765321                 1235789999988874   56


Q ss_pred             EEEEEeCCCeEEEEECCCCeeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEE
Q 013274          118 LFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTV  196 (446)
Q Consensus       118 ~l~s~s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv  196 (446)
                      .+++|+.|++|++||+.+++.+..+.. .+.+.++.+     +..++++|+.|+.|++||+++++.+..+.+|...|.++
T Consensus       211 ~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  285 (445)
T 2ovr_B          211 RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY-----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL  285 (445)
T ss_dssp             EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE-----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEE
T ss_pred             EEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE-----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEE
Confidence            899999999999999999988877653 445666666     23578999999999999999999999999999999999


Q ss_pred             EEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCce
Q 013274          197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGV  276 (446)
Q Consensus       197 ~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (446)
                      .|  ++. .+++++.||.|++||++++.++..+                                               
T Consensus       286 ~~--~~~-~l~~~~~d~~i~i~d~~~~~~~~~~-----------------------------------------------  315 (445)
T 2ovr_B          286 QF--DGI-HVVSGSLDTSIRVWDVETGNCIHTL-----------------------------------------------  315 (445)
T ss_dssp             EE--CSS-EEEEEETTSCEEEEETTTCCEEEEE-----------------------------------------------
T ss_pred             EE--CCC-EEEEEeCCCeEEEEECCCCCEEEEE-----------------------------------------------
Confidence            99  555 4789999999999999876543322                                               


Q ss_pred             eecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecC
Q 013274          277 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTS  356 (446)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~  356 (446)
                                                   .+|...+.++.+  ++.+|++|+.|+.|++||+.+++... .+.....+..
T Consensus       316 -----------------------------~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~  363 (445)
T 2ovr_B          316 -----------------------------TGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQ-TLQGPNKHQS  363 (445)
T ss_dssp             -----------------------------CCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEE-EECSTTSCSS
T ss_pred             -----------------------------cCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEE-EEccCCCCCC
Confidence                                         234556777666  46799999999999999998875321 1111000122


Q ss_pred             CCeEEEEcCCCcEEEEeC-CCceEEEEeecCceEEEe-----cccccceEEEEEcCCCCEEEEeeCCCc----EEEeCCC
Q 013274          357 KPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTF-----RGHYEYVNCCCFSSQDQELYTGGNDRQ----ILVWCPS  426 (446)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~l-----~gH~~~v~~~~fSpd~~~lvtgs~D~~----v~vW~~~  426 (446)
                      ....+++  ++..+++++ .+.+++||+.+++.+..+     .+|.+.|++++|+|++.+|++|+.|++    |.||+.+
T Consensus       364 ~v~~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~  441 (445)
T 2ovr_B          364 AVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  441 (445)
T ss_dssp             CEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             CEEEEEE--CCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECC
Confidence            2333444  456666665 568999999999998888     589999999999999999999999998    9999886


Q ss_pred             C
Q 013274          427 R  427 (446)
Q Consensus       427 ~  427 (446)
                      .
T Consensus       442 ~  442 (445)
T 2ovr_B          442 V  442 (445)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=7.7e-32  Score=257.82  Aligned_cols=294  Identities=12%  Similarity=0.110  Sum_probs=223.7

Q ss_pred             eEeCCCccceeEEEeecCC--CCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeec
Q 013274           37 EIVSPHKGSINSLQVDLTE--ERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV  114 (446)
Q Consensus        37 ~~~~~H~~~v~~l~~s~~~--~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~  114 (446)
                      .++.+|.+.|++|+|+|++  +++|++|+.||+|+|||+++....           +    .....+|...|.++.|+| 
T Consensus        33 ~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~-----------~----~~~~~~h~~~v~~~~~~~-   96 (368)
T 3mmy_A           33 EVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT-----------I----PKAQQMHTGPVLDVCWSD-   96 (368)
T ss_dssp             ECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE-----------E----EEEEEECSSCEEEEEECT-
T ss_pred             EeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce-----------e----EEEeccccCCEEEEEECc-
Confidence            3467999999999999864  689999999999999999762210           0    012347999999999987 


Q ss_pred             CCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeE
Q 013274          115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM  194 (446)
Q Consensus       115 ~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~  194 (446)
                      ++++|++++.|++|++||+.+++.+....+.+.+.++.+.+. ++..+|++++.|+.|++||+++++.+..+..|. .+.
T Consensus        97 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~  174 (368)
T 3mmy_A           97 DGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKA-PNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCY  174 (368)
T ss_dssp             TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEEC-SSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEE
T ss_pred             CCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeC-CCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-Cce
Confidence            888999999999999999999998887778888888888332 244689999999999999999999888888765 677


Q ss_pred             EEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCC
Q 013274          195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGN  274 (446)
Q Consensus       195 sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (446)
                      ++.+.++   .+++++.|+.+++||++.........                                            
T Consensus       175 ~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~--------------------------------------------  207 (368)
T 3mmy_A          175 CADVIYP---MAVVATAERGLIVYQLENQPSEFRRI--------------------------------------------  207 (368)
T ss_dssp             EEEEETT---EEEEEEGGGCEEEEECSSSCEEEEEC--------------------------------------------
T ss_pred             EEEecCC---eeEEEeCCCcEEEEEeccccchhhhc--------------------------------------------
Confidence            7777653   35788889999999997643210000                                            


Q ss_pred             ceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCE----EEEeecCCcEEEEecCcCce--eeeee
Q 013274          275 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMY----LLSAGSDSRIRLWDVESGRN--TLVNF  348 (446)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~----l~sgs~D~~i~lWd~~~~~~--~~~~~  348 (446)
                                                    ...+...+.++.+.+++..    +++++.|+.|++||+.....  ....+
T Consensus       208 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~  257 (368)
T 3mmy_A          208 ------------------------------ESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTF  257 (368)
T ss_dssp             ------------------------------CCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEE
T ss_pred             ------------------------------cccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceee
Confidence                                          0011123455666655544    99999999999999987532  11111


Q ss_pred             eEEEe---------ecCCCeEEEEcCCCcEEEEeC-CCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCC
Q 013274          349 ETVRL---------QTSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDR  418 (446)
Q Consensus       349 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~  418 (446)
                      .....         +......++++|++..+++++ ...+++||+.+++.+..+.+|...|++++|+||+++|++||.|+
T Consensus       258 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~  337 (368)
T 3mmy_A          258 KCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYD  337 (368)
T ss_dssp             ECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCC
T ss_pred             eeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccc
Confidence            11000         001355688999988877765 46799999999999999999999999999999999999999998


Q ss_pred             cEEEeCC
Q 013274          419 QILVWCP  425 (446)
Q Consensus       419 ~v~vW~~  425 (446)
                      ..+.|+.
T Consensus       338 ~~~~~~~  344 (368)
T 3mmy_A          338 WSKGHEF  344 (368)
T ss_dssp             STTCGGG
T ss_pred             ccccccc
Confidence            7666654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=7.7e-32  Score=285.72  Aligned_cols=291  Identities=17%  Similarity=0.290  Sum_probs=235.6

Q ss_pred             eeEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecC
Q 013274           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (446)
Q Consensus        36 ~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~  115 (446)
                      ...+.+|++.|++++|+| ++++|++|+.||+|+|||+.++...                 ....+|...|.++.|+| +
T Consensus         6 ~~~~~~h~~~v~~i~~sp-~~~~la~~~~~g~v~iwd~~~~~~~-----------------~~~~~~~~~v~~~~~s~-~   66 (814)
T 3mkq_A            6 KKTFSNRSDRVKGIDFHP-TEPWVLTTLYSGRVEIWNYETQVEV-----------------RSIQVTETPVRAGKFIA-R   66 (814)
T ss_dssp             EEEEEEECSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEE-----------------EEEECCSSCEEEEEEEG-G
T ss_pred             ceeeecCCCceEEEEECC-CCCEEEEEeCCCEEEEEECCCCceE-----------------EEEecCCCcEEEEEEeC-C
Confidence            455789999999999997 6789999999999999998765321                 12347899999999987 7


Q ss_pred             CcEEEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC-ceeeeeeCCCCCe
Q 013274          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AISQTLSGHRDGI  193 (446)
Q Consensus       116 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~-~~~~~l~~h~~~v  193 (446)
                      +++|++++.|++|++||+.+++.+..+. +.+.+.++++++..   .+|++++.|+.|++||++++ .....+.+|...|
T Consensus        67 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v  143 (814)
T 3mkq_A           67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK---PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFV  143 (814)
T ss_dssp             GTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS---SEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCC---CEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcE
Confidence            8899999999999999999998887776 55678888998854   47899999999999999987 6778889999999


Q ss_pred             EEEEEec-CCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccC
Q 013274          194 MTVEWST-SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSAN  272 (446)
Q Consensus       194 ~sv~~s~-~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (446)
                      .+++|+| ++. .|++++.||+|++||++++.....+                                           
T Consensus       144 ~~~~~~p~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~-------------------------------------------  179 (814)
T 3mkq_A          144 MCVAFNPKDPS-TFASGCLDRTVKVWSLGQSTPNFTL-------------------------------------------  179 (814)
T ss_dssp             EEEEEETTEEE-EEEEEETTSEEEEEETTCSSCSEEE-------------------------------------------
T ss_pred             EEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcceeEE-------------------------------------------
Confidence            9999999 554 6899999999999998754321111                                           


Q ss_pred             CCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEcc--CCCEEEEeecCCcEEEEecCcCceeeeeeeE
Q 013274          273 GNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE--DGMYLLSAGSDSRIRLWDVESGRNTLVNFET  350 (446)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~--dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~  350 (446)
                                                      ...|...+.+++|+|  ++.+|++|+.|++|++||+.+++..    ..
T Consensus       180 --------------------------------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~----~~  223 (814)
T 3mkq_A          180 --------------------------------TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV----AT  223 (814)
T ss_dssp             --------------------------------ECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEE----EE
T ss_pred             --------------------------------ecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEE----EE
Confidence                                            012335688999999  9999999999999999999886532    22


Q ss_pred             EEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCCE-EEEeeCCCcEEEeCCCCC
Q 013274          351 VRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQE-LYTGGNDRQILVWCPSRH  428 (446)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~-lvtgs~D~~v~vW~~~~~  428 (446)
                      +..+......++++|++..+++++. +.+++||+.+++....+..|...+++++|+|+++. +++++.|+.+.+|+....
T Consensus       224 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (814)
T 3mkq_A          224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND  303 (814)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCC
T ss_pred             EcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCC
Confidence            2223445567889999988877754 68999999999999999999999999999999874 244555777888876543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=6.6e-32  Score=253.64  Aligned_cols=249  Identities=22%  Similarity=0.416  Sum_probs=203.7

Q ss_pred             ccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeC
Q 013274           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI  177 (446)
Q Consensus        99 ~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~  177 (446)
                      ..+|...|.++.++| ++++|++|+.|++|++|++.+++....+. +...+..+++++.   ..+|++|+.|+.|++||+
T Consensus        19 ~~gh~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~s~~~d~~i~vwd~   94 (312)
T 4ery_A           19 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD---SNLLVSASDDKTLKIWDV   94 (312)
T ss_dssp             ECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT---SSEEEEEETTSEEEEEET
T ss_pred             EcccCCcEEEEEECC-CCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCC---CCEEEEECCCCEEEEEEC
Confidence            468999999999987 78899999999999999999888777665 3456788888874   458999999999999999


Q ss_pred             CCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCC
Q 013274          178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQ  257 (446)
Q Consensus       178 ~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (446)
                      ++++.+..+.+|...|.++.|+|+++. |++|+.|++|++||+++++++..+                            
T Consensus        95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~----------------------------  145 (312)
T 4ery_A           95 SSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVKTGKCLKTL----------------------------  145 (312)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECSSSSE-EEEEETTSCEEEEETTTCCEEEEE----------------------------
T ss_pred             CCCcEEEEEcCCCCCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCEEEEEe----------------------------
Confidence            999999999999999999999999875 789999999999999876543222                            


Q ss_pred             CCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEe
Q 013274          258 NSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWD  337 (446)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd  337 (446)
                                                                      ..|..+|.+++|+|++.+|++++.|+.|++||
T Consensus       146 ------------------------------------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd  177 (312)
T 4ery_A          146 ------------------------------------------------PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD  177 (312)
T ss_dssp             ------------------------------------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ------------------------------------------------cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Confidence                                                            24667799999999999999999999999999


Q ss_pred             cCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeC-CCceEEEEeecCceEEEecccccceEEE--EE-cCCCCEEEE
Q 013274          338 VESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCC--CF-SSQDQELYT  413 (446)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~l~gH~~~v~~~--~f-Spd~~~lvt  413 (446)
                      +.+++.... +  ..........++++|++..+++++ ...+++||+.+++....+.+|...+.++  .| .+++++|++
T Consensus       178 ~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  254 (312)
T 4ery_A          178 TASGQCLKT-L--IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS  254 (312)
T ss_dssp             TTTCCEEEE-E--CCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEE
T ss_pred             CCCCceeeE-E--eccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEE
Confidence            988653211 1  011122334578899988887765 4689999999999999999998765432  34 478899999


Q ss_pred             eeCCCcEEEeCCCCCCCC
Q 013274          414 GGNDRQILVWCPSRHISD  431 (446)
Q Consensus       414 gs~D~~v~vW~~~~~~~~  431 (446)
                      |+.|+.|++|++......
T Consensus       255 g~~dg~i~vwd~~~~~~~  272 (312)
T 4ery_A          255 GSEDNLVYIWNLQTKEIV  272 (312)
T ss_dssp             CCTTSCEEEEETTTCCEE
T ss_pred             ECCCCEEEEEECCCchhh
Confidence            999999999999866543

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.7e-32  Score=265.28  Aligned_cols=252  Identities=20%  Similarity=0.339  Sum_probs=204.0

Q ss_pred             ccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecC-CceEEeeeccCCCCceEEEEeeCCCcEEEEeC
Q 013274           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI  177 (446)
Q Consensus        99 ~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~  177 (446)
                      +.||.+.|+++.|+| ++.+|+|||.|++|++||+.+++.+..+..+ ..+..+++++.   ..+|++|+.|+.|++||+
T Consensus        62 l~gH~~~V~~~~~sp-~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~---g~~las~~~d~~v~iw~~  137 (380)
T 3iz6_a           62 LQGHSGKVYSLDWTP-EKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN---GQSVACGGLDSACSIFNL  137 (380)
T ss_dssp             ECCCSSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTT---SSEEEECCSSSCCEEEEC
T ss_pred             ccccccEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCC---CCEEEEeeCCCcEEEEEC
Confidence            468999999999987 7889999999999999999999888777643 44667777774   458999999999999999


Q ss_pred             CCCc-------eeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeec
Q 013274          178 ASGA-------ISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSIS  250 (446)
Q Consensus       178 ~~~~-------~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (446)
                      .+..       ....+.+|.+.|.++.|+|++...|+||+.|++|++||++++.++..+...                  
T Consensus       138 ~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~------------------  199 (380)
T 3iz6_a          138 SSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSE------------------  199 (380)
T ss_dssp             CCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCC------------------
T ss_pred             CCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecc------------------
Confidence            7542       345788999999999999986656899999999999999887654433100                  


Q ss_pred             cccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEcc-CCCEEEEeec
Q 013274          251 KSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE-DGMYLLSAGS  329 (446)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~sgs~  329 (446)
                                                                           ...+|...|.+++|++ ++.+|+||+.
T Consensus       200 -----------------------------------------------------~~~~h~~~v~~~~~~~~~~~~l~sgs~  226 (380)
T 3iz6_a          200 -----------------------------------------------------FPSGHTADVLSLSINSLNANMFISGSC  226 (380)
T ss_dssp             -----------------------------------------------------SSSSCCSCEEEEEECSSSCCEEEEEET
T ss_pred             -----------------------------------------------------cCCCCccCeEEEEeecCCCCEEEEEEC
Confidence                                                                 0135778899999987 8899999999


Q ss_pred             CCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEeccccc-------ceEE
Q 013274          330 DSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYE-------YVNC  401 (446)
Q Consensus       330 D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~-------~v~~  401 (446)
                      |++|++||+.......   ..+..+......++++|++..+++++. ..+++||+.+++.+..+..|..       .|++
T Consensus       227 D~~v~~wd~~~~~~~~---~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~  303 (380)
T 3iz6_a          227 DTTVRLWDLRITSRAV---RTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTS  303 (380)
T ss_dssp             TSCEEEEETTTTCCCC---EEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSE
T ss_pred             CCeEEEEECCCCCcce---EEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEE
Confidence            9999999997532222   122234456678899999998888765 5899999999998888876543       4899


Q ss_pred             EEEcCCCCEEEEeeCCCcEEEeCCCCC
Q 013274          402 CCFSSQDQELYTGGNDRQILVWCPSRH  428 (446)
Q Consensus       402 ~~fSpd~~~lvtgs~D~~v~vW~~~~~  428 (446)
                      ++|+|++++|++|+.|+.|+||+....
T Consensus       304 ~~~s~~g~~l~~g~~dg~i~vwd~~~~  330 (380)
T 3iz6_a          304 VAFSISGRLLFAGYSNGDCYVWDTLLA  330 (380)
T ss_dssp             EEECSSSSEEEEECTTSCEEEEETTTC
T ss_pred             EEECCCCCEEEEEECCCCEEEEECCCC
Confidence            999999999999999999999998654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.3e-31  Score=256.46  Aligned_cols=246  Identities=21%  Similarity=0.308  Sum_probs=200.9

Q ss_pred             ccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecC-CceEEeeeccCCCCceEEEEeeCCCcEEEEeC
Q 013274           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI  177 (446)
Q Consensus        99 ~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~  177 (446)
                      +.||...|.++.|+| ++.+|+|||.|++|++||..++.....+..+ ..+..++++|.   ..++++|+.|+.+++|++
T Consensus        60 l~gH~~~V~~~~~s~-d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~---g~~lasg~~d~~i~v~~~  135 (354)
T 2pbi_B           60 LKGHGNKVLCMDWCK-DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS---GCAIACGGLDNKCSVYPL  135 (354)
T ss_dssp             EECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTT---SSEEEEESTTSEEEEEEC
T ss_pred             ecCCCCeEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCC---CCEEEEeeCCCCEEEEEE
Confidence            458999999999987 7889999999999999999988877666543 34677888875   458999999999999998


Q ss_pred             CCC------ceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeecc
Q 013274          178 ASG------AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISK  251 (446)
Q Consensus       178 ~~~------~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (446)
                      ...      .....+.+|.+.|.++.|+|++.. |+|++.|++|++||+++++++..+                      
T Consensus       136 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~t~s~D~~v~lwd~~~~~~~~~~----------------------  192 (354)
T 2pbi_B          136 TFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQ-ILTASGDGTCALWDVESGQLLQSF----------------------  192 (354)
T ss_dssp             CCCTTCCSGGGCEEEEECSSCEEEEEECSSSSE-EEEEETTSEEEEEETTTCCEEEEE----------------------
T ss_pred             eccccccccccceeeeccCCcEEEEEEeCCCCE-EEEEeCCCcEEEEeCCCCeEEEEE----------------------
Confidence            654      245677899999999999999875 789999999999999876543322                      


Q ss_pred             ccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEcc--CCCEEEEeec
Q 013274          252 SLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE--DGMYLLSAGS  329 (446)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~--dg~~l~sgs~  329 (446)
                                                                            .+|...|.+++|+|  +|.+|++|+.
T Consensus       193 ------------------------------------------------------~~h~~~v~~~~~~~~~~g~~l~sgs~  218 (354)
T 2pbi_B          193 ------------------------------------------------------HGHGADVLCLDLAPSETGNTFVSGGC  218 (354)
T ss_dssp             ------------------------------------------------------ECCSSCEEEEEECCCSSCCEEEEEET
T ss_pred             ------------------------------------------------------cCCCCCeEEEEEEeCCCCCEEEEEeC
Confidence                                                                  35677799999987  5789999999


Q ss_pred             CCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEeccc--ccceEEEEEcC
Q 013274          330 DSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGH--YEYVNCCCFSS  406 (446)
Q Consensus       330 D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH--~~~v~~~~fSp  406 (446)
                      |++|++||+.+++..    ..+..+......++++|++..+++++. ..+++||+.+++....+..+  ...+++++|+|
T Consensus       219 Dg~v~~wd~~~~~~~----~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~  294 (354)
T 2pbi_B          219 DKKAMVWDMRSGQCV----QAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSL  294 (354)
T ss_dssp             TSCEEEEETTTCCEE----EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT
T ss_pred             CCeEEEEECCCCcEE----EEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeC
Confidence            999999999987542    122223445567889999988888755 68999999888777766644  45789999999


Q ss_pred             CCCEEEEeeCCCcEEEeCCCCCC
Q 013274          407 QDQELYTGGNDRQILVWCPSRHI  429 (446)
Q Consensus       407 d~~~lvtgs~D~~v~vW~~~~~~  429 (446)
                      ++++|++|+.|++|+||++....
T Consensus       295 ~g~~l~~g~~d~~i~vwd~~~~~  317 (354)
T 2pbi_B          295 SGRLLFAGYNDYTINVWDVLKGS  317 (354)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCS
T ss_pred             CCCEEEEEECCCcEEEEECCCCc
Confidence            99999999999999999986554

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=8e-32  Score=261.77  Aligned_cols=246  Identities=24%  Similarity=0.422  Sum_probs=197.4

Q ss_pred             CccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCC-------------------ceEEeeeccCCCCce
Q 013274          101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPG-------------------KVYRTAMSPLAASHM  161 (446)
Q Consensus       101 gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~  161 (446)
                      +|...|.++.|+| ++++||+|+ |+++++|++.+++.+..+....                   .+.+++++++   ..
T Consensus        62 ~h~~~V~~v~fsp-dg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d---g~  136 (393)
T 1erj_A           62 DHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD---GK  136 (393)
T ss_dssp             ECSSCCCEEEECT-TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT---SS
T ss_pred             CCCCEEEEEEECC-CCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCC---CC
Confidence            6999999999987 888999976 7899999999988776654221                   2667788774   45


Q ss_pred             EEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCc
Q 013274          162 LIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPP  241 (446)
Q Consensus       162 ~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~  241 (446)
                      +|++|+.|+.|++||+++++.+..+.+|...|.+++|+|+++. |++++.|++|++||++++.+...+            
T Consensus       137 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~-l~s~s~d~~v~iwd~~~~~~~~~~------------  203 (393)
T 1erj_A          137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK-LVSGSGDRTVRIWDLRTGQCSLTL------------  203 (393)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTTEEEEEE------------
T ss_pred             EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCE-EEEecCCCcEEEEECCCCeeEEEE------------
Confidence            8999999999999999999999999999999999999999885 789999999999999876543222            


Q ss_pred             ccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEcc-C
Q 013274          242 LLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE-D  320 (446)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~-d  320 (446)
                                                                                       .|...+.+++|+| +
T Consensus       204 -----------------------------------------------------------------~~~~~v~~~~~~~~~  218 (393)
T 1erj_A          204 -----------------------------------------------------------------SIEDGVTTVAVSPGD  218 (393)
T ss_dssp             -----------------------------------------------------------------ECSSCEEEEEECSTT
T ss_pred             -----------------------------------------------------------------EcCCCcEEEEEECCC
Confidence                                                                             1234588999999 8


Q ss_pred             CCEEEEeecCCcEEEEecCcCceeeeeeeE----EEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecC---------
Q 013274          321 GMYLLSAGSDSRIRLWDVESGRNTLVNFET----VRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSG---------  386 (446)
Q Consensus       321 g~~l~sgs~D~~i~lWd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~---------  386 (446)
                      |.+|++|+.|++|++||+.++.... .+..    ...+......+++++++..+++++. ..+++||+.+.         
T Consensus       219 ~~~l~~~s~d~~v~iwd~~~~~~~~-~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~  297 (393)
T 1erj_A          219 GKYIAAGSLDRAVRVWDSETGFLVE-RLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP  297 (393)
T ss_dssp             CCEEEEEETTSCEEEEETTTCCEEE-EEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------
T ss_pred             CCEEEEEcCCCcEEEEECCCCcEEE-eecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCC
Confidence            9999999999999999998865321 1110    0112334567889999998888754 68999998653         


Q ss_pred             ---ceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCCC
Q 013274          387 ---KTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS  430 (446)
Q Consensus       387 ---~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~~  430 (446)
                         ....++.+|.+.|.+++|+|++++|+|||.|++|++|++.....
T Consensus       298 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~  344 (393)
T 1erj_A          298 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP  344 (393)
T ss_dssp             ---CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCE
T ss_pred             CCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeE
Confidence               34568899999999999999999999999999999999876543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=2.4e-32  Score=266.13  Aligned_cols=290  Identities=17%  Similarity=0.213  Sum_probs=223.4

Q ss_pred             cceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEe
Q 013274           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS  123 (446)
Q Consensus        44 ~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s  123 (446)
                      ...+.++++|....++++++.||.|+|||+.......        .     ......+|...|.++.|+|.++.+|++|+
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~--------~-----~~~~~~~h~~~V~~~~~~p~~~~~l~s~s  101 (402)
T 2aq5_A           35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD--------K-----NVPLVCGHTAPVLDIAWCPHNDNVIASGS  101 (402)
T ss_dssp             CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC--------T-----TCCCBCCCSSCEEEEEECTTCTTEEEEEE
T ss_pred             cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC--------C-----CCceEecCCCCEEEEEeCCCCCCEEEEEe
Confidence            4456688887544566678999999999985432110        0     01224589999999999986788999999


Q ss_pred             CCCeEEEEECCCC-------eeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeee--eCCCCCe
Q 013274          124 YDHYVKVWDTNCT-------RVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL--SGHRDGI  193 (446)
Q Consensus       124 ~D~~i~iWd~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l--~~h~~~v  193 (446)
                      .|++|++||+.++       +++..+. +.+.+..+++++..  ..+|++++.|+.|++||+++++.+..+  .+|.+.|
T Consensus       102 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v  179 (402)
T 2aq5_A          102 EDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTA--QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTI  179 (402)
T ss_dssp             TTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSB--TTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCE
T ss_pred             CCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCC--CCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCce
Confidence            9999999999887       4455554 45668888998854  248999999999999999999999998  8899999


Q ss_pred             EEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCC
Q 013274          194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANG  273 (446)
Q Consensus       194 ~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (446)
                      .+++|+|+++. |++++.||.|++||++++.+...+.                                           
T Consensus       180 ~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~-------------------------------------------  215 (402)
T 2aq5_A          180 YSVDWSRDGAL-ICTSCRDKRVRVIEPRKGTVVAEKD-------------------------------------------  215 (402)
T ss_dssp             EEEEECTTSSC-EEEEETTSEEEEEETTTTEEEEEEE-------------------------------------------
T ss_pred             EEEEECCCCCE-EEEEecCCcEEEEeCCCCceeeeec-------------------------------------------
Confidence            99999999885 7899999999999998765433321                                           


Q ss_pred             CceeecccceeecCCccccccCCCcccccccccccccC-eEEEEEccCCCEEEEe---ecCCcEEEEecCcCceeeeeee
Q 013274          274 NGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGA-VTGLKVTEDGMYLLSA---GSDSRIRLWDVESGRNTLVNFE  349 (446)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~fs~dg~~l~sg---s~D~~i~lWd~~~~~~~~~~~~  349 (446)
                                                      .+|.+. +.++.|+|+|.+|++|   +.|+.|++||+.+.+...... 
T Consensus       216 --------------------------------~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~-  262 (402)
T 2aq5_A          216 --------------------------------RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQ-  262 (402)
T ss_dssp             --------------------------------CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEE-
T ss_pred             --------------------------------cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEE-
Confidence                                            123333 7889999999999999   799999999998865322111 


Q ss_pred             EEEeecCCCeEEEEcCCCcEEEE-eC-CCceEEEEeecCce-EEEeccc--ccceEEEEEcCCCCEEEEeeCCCcEEEeC
Q 013274          350 TVRLQTSKPIQLATTQDPAVVFV-PC-MTAVKAFDIWSGKT-CLTFRGH--YEYVNCCCFSSQDQELYTGGNDRQILVWC  424 (446)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~d~~~~~~-~~~l~gH--~~~v~~~~fSpd~~~lvtgs~D~~v~vW~  424 (446)
                      . .........+++++++..+++ +. ...+++|++.+++. +..+..|  ...|.+++|+||+.++++  .|+.+++|+
T Consensus       263 ~-~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~  339 (402)
T 2aq5_A          263 E-LDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYK  339 (402)
T ss_dssp             E-CCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEE
T ss_pred             e-ccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEE
Confidence            1 012345667889999888865 43 56899999998874 5555554  599999999999999875  467999999


Q ss_pred             CCCC
Q 013274          425 PSRH  428 (446)
Q Consensus       425 ~~~~  428 (446)
                      +...
T Consensus       340 l~~~  343 (402)
T 2aq5_A          340 LHER  343 (402)
T ss_dssp             EETT
T ss_pred             cCCC
Confidence            8754

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-31  Score=253.11  Aligned_cols=246  Identities=16%  Similarity=0.186  Sum_probs=185.1

Q ss_pred             ccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCC--eeeEEEe---cCCceEEeeeccCCCCceEEEEeeCCCcEE
Q 013274           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT--RVVMNFK---MPGKVYRTAMSPLAASHMLIAAGTEDVQVR  173 (446)
Q Consensus        99 ~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~lasgs~d~~v~  173 (446)
                      ..+|+..|.++.+++ +  +|+||+.|++|++||+..+  ..+..+.   +.+.+.+++++|.   ..+|++|+.|+.|+
T Consensus        10 ~~~h~~~v~~~~~s~-~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~---~~~las~s~D~~v~   83 (330)
T 2hes_X           10 LKLYKEKIWSFDFSQ-G--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPH---TSLLAAGSFDSTVS   83 (330)
T ss_dssp             EECCSSCEEEEEEET-T--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTT---SSEEEEEETTSCEE
T ss_pred             eccCCCceeeeccCC-C--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCC---CCEEEEEeCCCcEE
Confidence            358999999998876 3  9999999999999999875  3444442   4456888999885   35899999999999


Q ss_pred             EEeCCC-------CceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCc-eeEEeecccccccCCCccccc
Q 013274          174 LCDIAS-------GAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG-CFRVLDQSQSQLGRRPPLLKR  245 (446)
Q Consensus       174 vwd~~~-------~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~  245 (446)
                      +||++.       ..+...+.+|.+.|.+++|+|++++ |+||+.|++|++||++... ....                 
T Consensus        84 iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~-las~s~D~~v~iwd~~~~~~~~~~-----------------  145 (330)
T 2hes_X           84 IWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYY-LATCSRDKSVWIWETDESGEEYEC-----------------  145 (330)
T ss_dssp             EEEC-------CCCEEEEEEC----CEEEEEECTTSCE-EEEEETTSCEEEEECCTTCCCCEE-----------------
T ss_pred             EEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCE-EEEEeCCCEEEEEeccCCCCCeEE-----------------
Confidence            999953       3456778999999999999999885 7999999999999985321 0000                 


Q ss_pred             ceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEE
Q 013274          246 KVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLL  325 (446)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~  325 (446)
                                                                              .....+|...|.+++|+|++.+|+
T Consensus       146 --------------------------------------------------------~~~~~~h~~~v~~v~~~p~~~~l~  169 (330)
T 2hes_X          146 --------------------------------------------------------ISVLQEHSQDVKHVIWHPSEALLA  169 (330)
T ss_dssp             --------------------------------------------------------EEEECCCSSCEEEEEECSSSSEEE
T ss_pred             --------------------------------------------------------EEEeccCCCceEEEEECCCCCEEE
Confidence                                                                    001236788899999999999999


Q ss_pred             EeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCC--CcEEEEeC-CCceEEEEeecC--------ceEEEecc
Q 013274          326 SAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQD--PAVVFVPC-MTAVKAFDIWSG--------KTCLTFRG  394 (446)
Q Consensus       326 sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~d~~~~--------~~~~~l~g  394 (446)
                      ||+.|++|++||+.++....  +..+..+......+.+.++  +..+++++ +..+++|++.++        .....+.+
T Consensus       170 s~s~D~~i~iW~~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~  247 (330)
T 2hes_X          170 SSSYDDTVRIWKDYDDDWEC--VAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPD  247 (330)
T ss_dssp             EEETTSCEEEEEEETTEEEE--EEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCS
T ss_pred             EEcCCCeEEEEECCCCCeeE--EEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccc
Confidence            99999999999987653211  1222233445566788887  55666654 468999999765        34456666


Q ss_pred             -cccceEEEEEcCCCCEEEEeeCCCcEEEeCCCC
Q 013274          395 -HYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR  427 (446)
Q Consensus       395 -H~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~  427 (446)
                       |...|++++|+|++ +|++|+.|++|+||+...
T Consensus       248 ~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~  280 (330)
T 2hes_X          248 VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVD  280 (330)
T ss_dssp             CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEET
T ss_pred             ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCC
Confidence             99999999999765 899999999999998754

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=5.5e-32  Score=266.66  Aligned_cols=303  Identities=12%  Similarity=0.260  Sum_probs=213.0

Q ss_pred             CCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCcc------------ccEeE
Q 013274           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHK------------YAISS  108 (446)
Q Consensus        41 ~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~------------~~V~~  108 (446)
                      .|.+.|++|+|+| ++++||+|+.||.|+|||+.++....... ....+.     .....+|.            ..|.+
T Consensus        26 ~~~~~V~~v~~s~-~g~~la~g~~dg~v~iw~~~~~~~~~~~~-~~~~~~-----~~~~~~h~~~~~~~~~~~~~~~V~~   98 (447)
T 3dw8_B           26 AEADIISTVEFNH-SGELLATGDKGGRVVIFQQEQENKIQSHS-RGEYNV-----YSTFQSHEPEFDYLKSLEIEEKINK   98 (447)
T ss_dssp             CGGGSEEEEEECS-SSSEEEEEETTSEEEEEEECC-----CCC-CCCEEE-----EEEEECCCCEEEGGGTEEECCCCCE
T ss_pred             cccCcEEEEEECC-CCCEEEEEcCCCeEEEEEecCCCCCCccc-ccceeE-----ecccccccccccccccccccCceEE
Confidence            5789999999997 68899999999999999998654210000 000000     11234787            78999


Q ss_pred             EEEeecCC-cEEEEEeCCCeEEEEECCCCeee---------------------------------------EEE--ecCC
Q 013274          109 AIWYPVDT-GLFVTGSYDHYVKVWDTNCTRVV---------------------------------------MNF--KMPG  146 (446)
Q Consensus       109 ~~~~~~~~-~~l~s~s~D~~i~iWd~~~~~~~---------------------------------------~~~--~~~~  146 (446)
                      +.|+|... .+|++++.|++|++||+.++...                                       ..+  .+..
T Consensus        99 l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  178 (447)
T 3dw8_B           99 IRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTY  178 (447)
T ss_dssp             EEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSS
T ss_pred             EEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCc
Confidence            99998432 69999999999999998764331                                       111  2345


Q ss_pred             ceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC-ceee-------eeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEE
Q 013274          147 KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AISQ-------TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFW  218 (446)
Q Consensus       147 ~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~-~~~~-------~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iW  218 (446)
                      .+.++++++.   ..+|++| .|+.|++||++++ ....       .+.+|...|.+++|+|++..+|++|+.||+|++|
T Consensus       179 ~v~~~~~~~~---~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw  254 (447)
T 3dw8_B          179 HINSISINSD---YETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLC  254 (447)
T ss_dssp             CCCEEEECTT---SSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred             ceEEEEEcCC---CCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEE
Confidence            5778888874   4578888 7999999999844 3433       3678999999999999983368999999999999


Q ss_pred             EccCCce----eEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCcccccc
Q 013274          219 DIRRAGC----FRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRL  294 (446)
Q Consensus       219 d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (446)
                      |++++..    ...+......                                                           
T Consensus       255 d~~~~~~~~~~~~~~~~~~~~-----------------------------------------------------------  275 (447)
T 3dw8_B          255 DMRASALCDRHSKLFEEPEDP-----------------------------------------------------------  275 (447)
T ss_dssp             ETTTCSSSCTTCEEECCC--------------------------------------------------------------
T ss_pred             ECcCCccccceeeEeccCCCc-----------------------------------------------------------
Confidence            9987643    1221100000                                                           


Q ss_pred             CCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCc-CceeeeeeeEEEeecC--C-------------C
Q 013274          295 HPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES-GRNTLVNFETVRLQTS--K-------------P  358 (446)
Q Consensus       295 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~-~~~~~~~~~~~~~~~~--~-------------~  358 (446)
                           .......+|.+.|.+++|+|+|.+|++++. ++|++||+.+ ++. ...+.   .+..  .             .
T Consensus       276 -----~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~-~~~~~---~~~~~~~~l~~~~~~~~i~~~  345 (447)
T 3dw8_B          276 -----SNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRP-VETYQ---VHEYLRSKLCSLYENDCIFDK  345 (447)
T ss_dssp             -------CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSC-SCCEE---SCGGGTTTHHHHHHTSGGGCC
T ss_pred             -----cccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccc-cceee---ccccccccccccccccccccc
Confidence                 000012356778999999999999999998 9999999986 432 21121   1111  0             1


Q ss_pred             eEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecc---------------------------------cccceEEEEE
Q 013274          359 IQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRG---------------------------------HYEYVNCCCF  404 (446)
Q Consensus       359 ~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~g---------------------------------H~~~v~~~~f  404 (446)
                      ..++++|++..+++++. ..+++||+.+++.+ .+.+                                 +...|.+++|
T Consensus       346 ~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  424 (447)
T 3dw8_B          346 FECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAW  424 (447)
T ss_dssp             CCEEECTTSSEEEEECSTTEEEEEETTTCCEE-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEE
T ss_pred             eEEEECCCCCEEEEeccCCEEEEEEcCCCcce-eeeecccccccccccCCccccccCCcccccccccccccCCceeEEEE
Confidence            23789999988887765 57999999888764 3332                                 3457899999


Q ss_pred             cCCCCEEEEeeCCCcEEEeCC
Q 013274          405 SSQDQELYTGGNDRQILVWCP  425 (446)
Q Consensus       405 Spd~~~lvtgs~D~~v~vW~~  425 (446)
                      +|++.+||+++.|+ +.+|..
T Consensus       425 ~p~~~~la~~~~~~-~~~~~~  444 (447)
T 3dw8_B          425 HPKENIIAVATTNN-LYIFQD  444 (447)
T ss_dssp             CSSSSEEEEECSSC-EEEEEC
T ss_pred             CCCCCEEEEEecce-eeeecc
Confidence            99999999998876 777743

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.9e-31  Score=251.62  Aligned_cols=244  Identities=19%  Similarity=0.303  Sum_probs=197.2

Q ss_pred             cccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCC-----eeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCc
Q 013274           98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT-----RVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQ  171 (446)
Q Consensus        98 ~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~  171 (446)
                      .+.||.+.|.++.++|.++.+|+|||.|++|++||+...     .++..+. +...+..+++++.   ..+|++|+.|+.
T Consensus        12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~d---g~~l~s~s~D~~   88 (319)
T 3frx_A           12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD---GAYALSASWDKT   88 (319)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTT---SSEEEEEETTSE
T ss_pred             EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCC---CCEEEEEeCCCE
Confidence            457999999999999866789999999999999998632     2344444 3455777888774   458999999999


Q ss_pred             EEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeecc
Q 013274          172 VRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISK  251 (446)
Q Consensus       172 v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (446)
                      |++||+++++.+..+.+|.+.|.+++|+|+++. |+||+.|++|++||++.. ++..                       
T Consensus        89 v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~s~D~~i~vwd~~~~-~~~~-----------------------  143 (319)
T 3frx_A           89 LRLWDVATGETYQRFVGHKSDVMSVDIDKKASM-IISGSRDKTIKVWTIKGQ-CLAT-----------------------  143 (319)
T ss_dssp             EEEEETTTTEEEEEEECCSSCEEEEEECTTSCE-EEEEETTSCEEEEETTSC-EEEE-----------------------
T ss_pred             EEEEECCCCCeeEEEccCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEECCCC-eEEE-----------------------
Confidence            999999999999999999999999999999875 799999999999998632 2111                       


Q ss_pred             ccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccC------CCEEE
Q 013274          252 SLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED------GMYLL  325 (446)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~d------g~~l~  325 (446)
                                                                           ..+|...|.++.|+|.      +.+|+
T Consensus       144 -----------------------------------------------------~~~h~~~v~~~~~~~~~~~~~~~~~l~  170 (319)
T 3frx_A          144 -----------------------------------------------------LLGHNDWVSQVRVVPNEKADDDSVTII  170 (319)
T ss_dssp             -----------------------------------------------------ECCCSSCEEEEEECCC------CCEEE
T ss_pred             -----------------------------------------------------EeccCCcEEEEEEccCCCCCCCccEEE
Confidence                                                                 1356777899999884      55899


Q ss_pred             EeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEE
Q 013274          326 SAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCF  404 (446)
Q Consensus       326 sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~f  404 (446)
                      +++.|++|++||+.+.+..    ..+..+......++++|++.++++++. ..+++||+.+++.+.++..| ..|.+++|
T Consensus       171 s~~~d~~i~~wd~~~~~~~----~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~  245 (319)
T 3frx_A          171 SAGNDKMVKAWNLNQFQIE----ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAF  245 (319)
T ss_dssp             EEETTSCEEEEETTTTEEE----EEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEE
T ss_pred             EEeCCCEEEEEECCcchhh----eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEE
Confidence            9999999999999876432    112223445667889999998888755 68999999999998888865 57999999


Q ss_pred             cCCCCEEEEeeCCCcEEEeCCCCC
Q 013274          405 SSQDQELYTGGNDRQILVWCPSRH  428 (446)
Q Consensus       405 Spd~~~lvtgs~D~~v~vW~~~~~  428 (446)
                      +||+.+|++++.+ .+++|+++..
T Consensus       246 sp~~~~la~~~~~-~i~v~~~~~~  268 (319)
T 3frx_A          246 SPNRYWLAAATAT-GIKVFSLDPQ  268 (319)
T ss_dssp             CSSSSEEEEEETT-EEEEEEETTE
T ss_pred             cCCCCEEEEEcCC-CcEEEEeCcC
Confidence            9999999988755 5999988754

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.6e-31  Score=262.83  Aligned_cols=275  Identities=20%  Similarity=0.316  Sum_probs=207.8

Q ss_pred             eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (446)
Q Consensus        39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~  118 (446)
                      ..+|.+.|++|+|+|.++.+|++++.||+|++||+.+.......  ......+     ....+|...|+++.|+|....+
T Consensus       124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~--~~~~~~~-----~~~~~h~~~v~~l~~~~~~~~~  196 (430)
T 2xyi_A          124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEP--SGECQPD-----LRLRGHQKEGYGLSWNPNLNGY  196 (430)
T ss_dssp             EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCT--TCCCCCS-----EEEECCSSCCCCEEECTTSTTE
T ss_pred             EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCc--cccCCCc-----EEecCCCCCeEEEEeCCCCCCe
Confidence            35799999999999865789999999999999999753211000  0000111     1235899999999999854449


Q ss_pred             EEEEeCCCeEEEEECCCCee-------eEEE-ecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC---ceeeeee
Q 013274          119 FVTGSYDHYVKVWDTNCTRV-------VMNF-KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG---AISQTLS  187 (446)
Q Consensus       119 l~s~s~D~~i~iWd~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~---~~~~~l~  187 (446)
                      |++|+.|++|++||+..+..       ...+ .+.+.+.++++++..  ..+|++++.|+.|++||++++   .....+.
T Consensus       197 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~--~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~  274 (430)
T 2xyi_A          197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH--ESLFGSVADDQKLMIWDTRNNNTSKPSHTVD  274 (430)
T ss_dssp             EEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSC--TTEEEEEETTSEEEEEETTCSCSSSCSEEEE
T ss_pred             EEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCC--CCEEEEEeCCCeEEEEECCCCCCCcceeEee
Confidence            99999999999999987322       2223 244568888888743  358999999999999999987   5677888


Q ss_pred             CCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCc-eeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCc
Q 013274          188 GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG-CFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAP  266 (446)
Q Consensus       188 ~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (446)
                      .|...|.+++|+|+++++|++|+.||+|++||+++.. .+.                                       
T Consensus       275 ~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~---------------------------------------  315 (430)
T 2xyi_A          275 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH---------------------------------------  315 (430)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSE---------------------------------------
T ss_pred             cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeE---------------------------------------
Confidence            9999999999999998778999999999999998531 100                                       


Q ss_pred             cccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCC-EEEEeecCCcEEEEecCcCceee
Q 013274          267 QKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM-YLLSAGSDSRIRLWDVESGRNTL  345 (446)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~sgs~D~~i~lWd~~~~~~~~  345 (446)
                                                           ...+|.+.|++++|+|++. +|++++.|++|++||+.......
T Consensus       316 -------------------------------------~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~  358 (430)
T 2xyi_A          316 -------------------------------------SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ  358 (430)
T ss_dssp             -------------------------------------EEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCC
T ss_pred             -------------------------------------EeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcccc
Confidence                                                 1235777899999999995 69999999999999998632110


Q ss_pred             eeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCC-EEEEeeCCCcEEEeC
Q 013274          346 VNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQ-ELYTGGNDRQILVWC  424 (446)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~-~lvtgs~D~~v~vW~  424 (446)
                      .. ..  . .          +                 ...+++..+.+|.+.|++++|+|+++ +|++++.|+.|+||+
T Consensus       359 ~~-~~--~-~----------~-----------------~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~  407 (430)
T 2xyi_A          359 ST-ED--A-E----------D-----------------GPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ  407 (430)
T ss_dssp             CH-HH--H-H----------H-----------------CCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred             Cc-cc--c-c----------c-----------------CCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence            00 00  0 0          0                 01234556788999999999999999 899999999999999


Q ss_pred             CCCCC
Q 013274          425 PSRHI  429 (446)
Q Consensus       425 ~~~~~  429 (446)
                      +....
T Consensus       408 ~~~~~  412 (430)
T 2xyi_A          408 MAENV  412 (430)
T ss_dssp             ECHHH
T ss_pred             ccccc
Confidence            87543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2e-30  Score=247.16  Aligned_cols=247  Identities=18%  Similarity=0.241  Sum_probs=190.0

Q ss_pred             cccCccccEeEEEE-----eecCCcEEEEEeCCCeEEEEECCCCe-------eeEEEe-cCCceEEeeeccCCCCceEEE
Q 013274           98 HEHGHKYAISSAIW-----YPVDTGLFVTGSYDHYVKVWDTNCTR-------VVMNFK-MPGKVYRTAMSPLAASHMLIA  164 (446)
Q Consensus        98 ~~~gh~~~V~~~~~-----~~~~~~~l~s~s~D~~i~iWd~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~~la  164 (446)
                      .+.||...|+++.+     ++.++.+|+|||.|++|++||+....       +...+. +.+.+.++++++.   ..+++
T Consensus        16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~---~~~l~   92 (343)
T 2xzm_R           16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE---NCFAI   92 (343)
T ss_dssp             EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS---TTEEE
T ss_pred             eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC---CCEEE
Confidence            34689999999998     55588999999999999999987532       333333 3455788888774   45899


Q ss_pred             EeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccc
Q 013274          165 AGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLK  244 (446)
Q Consensus       165 sgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~  244 (446)
                      +|+.|+.|++||+++++.+..+.+|.+.|.+++|+|+++. |++++.|++|++||++... ....               
T Consensus        93 s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~-l~s~~~d~~i~~wd~~~~~-~~~~---------------  155 (343)
T 2xzm_R           93 SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQ-ILSAGAEREIKLWNILGEC-KFSS---------------  155 (343)
T ss_dssp             EEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTE-EEEEETTSCEEEEESSSCE-EEEC---------------
T ss_pred             EEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCE-EEEEcCCCEEEEEeccCCc-eeee---------------
Confidence            9999999999999999999999999999999999999985 7899999999999986321 1000               


Q ss_pred             cceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCC---
Q 013274          245 RKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG---  321 (446)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg---  321 (446)
                                                                                ....+|...|.+++|+|++   
T Consensus       156 ----------------------------------------------------------~~~~~~~~~v~~~~~~~~~~~~  177 (343)
T 2xzm_R          156 ----------------------------------------------------------AEKENHSDWVSCVRYSPIMKSA  177 (343)
T ss_dssp             ----------------------------------------------------------CTTTSCSSCEEEEEECCCCCSC
T ss_pred             ----------------------------------------------------------ecccCCCceeeeeeeccccccc
Confidence                                                                      0012466779999999987   


Q ss_pred             -------CEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecC-ceEEEe
Q 013274          322 -------MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSG-KTCLTF  392 (446)
Q Consensus       322 -------~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~-~~~~~l  392 (446)
                             .+|++++.|++|++||... +.    ...+..+......++++|++.++++++. ..+++||+.+. .....+
T Consensus       178 ~~~~~~~~~l~s~~~d~~i~iwd~~~-~~----~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~  252 (343)
T 2xzm_R          178 NKVQPFAPYFASVGWDGRLKVWNTNF-QI----RYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF  252 (343)
T ss_dssp             SCCCSSCCEEEEEETTSEEEEEETTT-EE----EEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE
T ss_pred             cccCCCCCEEEEEcCCCEEEEEcCCC-ce----eEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee
Confidence                   7999999999999999542 11    1122333455667899999998888764 57999999443 333444


Q ss_pred             cccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCC
Q 013274          393 RGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI  429 (446)
Q Consensus       393 ~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~  429 (446)
                       .|...|++++|+|++++|+ ++.|+.|++|++.+..
T Consensus       253 -~~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~  287 (343)
T 2xzm_R          253 -DAGSTINQIAFNPKLQWVA-VGTDQGVKIFNLMTQS  287 (343)
T ss_dssp             -ECSSCEEEEEECSSSCEEE-EEESSCEEEEESSSCC
T ss_pred             -cCCCcEEEEEECCCCCEEE-EECCCCEEEEEeCCCC
Confidence             3556799999999998876 4568899999987554

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.6e-30  Score=266.39  Aligned_cols=294  Identities=17%  Similarity=0.244  Sum_probs=223.1

Q ss_pred             eeEeCCCccc-eeEEEeecC-CCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEee
Q 013274           36 KEIVSPHKGS-INSLQVDLT-EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYP  113 (446)
Q Consensus        36 ~~~~~~H~~~-v~~l~~s~~-~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~  113 (446)
                      ...+.+|.+. |++++|+|. ++++|++|+.||+|+|||+.++....   .+ ....     .....+|...|.++.++|
T Consensus        56 ~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~---~~-~~~~-----~~~~~~~~~~v~~~~~s~  126 (615)
T 1pgu_A           56 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESN---SV-EVNV-----KSEFQVLAGPISDISWDF  126 (615)
T ss_dssp             EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGT---EE-EEEE-----EEEEECCSSCEEEEEECT
T ss_pred             ceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccc---cc-cccc-----cchhhcccccEEEEEEeC
Confidence            4457899999 999999961 57899999999999999996541100   00 0000     112347888999999987


Q ss_pred             cCCcEEEEEeCC----CeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeC
Q 013274          114 VDTGLFVTGSYD----HYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG  188 (446)
Q Consensus       114 ~~~~~l~s~s~D----~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~  188 (446)
                       ++++|++++.|    +.|++||  .++.+..+. +.+.+..+.+++...  .++++++.|+.|++||+++++....+.+
T Consensus       127 -~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~d~~v~vwd~~~~~~~~~~~~  201 (615)
T 1pgu_A          127 -EGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRP--MRSMTVGDDGSVVFYQGPPFKFSASDRT  201 (615)
T ss_dssp             -TSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSS--CEEEEEETTTEEEEEETTTBEEEEEECS
T ss_pred             -CCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCC--cEEEEEeCCCcEEEEeCCCcceeeeecc
Confidence             78899999988    7899998  345555444 345678888887532  3799999999999999999999999999


Q ss_pred             CCC---CeEEEEEecC-CCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCC
Q 013274          189 HRD---GIMTVEWSTS-SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPR  264 (446)
Q Consensus       189 h~~---~v~sv~~s~~-~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (446)
                      |..   .|.+++|+|+ +++ |++++.||.|++||+++++.+..+..                                 
T Consensus       202 ~~~~~~~v~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~---------------------------------  247 (615)
T 1pgu_A          202 HHKQGSFVRDVEFSPDSGEF-VITVGSDRKISCFDGKSGEFLKYIED---------------------------------  247 (615)
T ss_dssp             SSCTTCCEEEEEECSTTCCE-EEEEETTCCEEEEETTTCCEEEECCB---------------------------------
T ss_pred             cCCCCceEEEEEECCCCCCE-EEEEeCCCeEEEEECCCCCEeEEecc---------------------------------
Confidence            999   9999999999 774 78999999999999987654322200                                 


Q ss_pred             CccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCcee
Q 013274          265 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNT  344 (446)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~  344 (446)
                                                             ...+|.+.|.+++|+ ++.+|++++.|+.|++||+.+++..
T Consensus       248 ---------------------------------------~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~  287 (615)
T 1pgu_A          248 ---------------------------------------DQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCV  287 (615)
T ss_dssp             ---------------------------------------TTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             ---------------------------------------cccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEE
Confidence                                                   001467789999999 9999999999999999999986532


Q ss_pred             eeeeeEEEee----cCCCeEEEEcCCCcEEEEe-CCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCc
Q 013274          345 LVNFETVRLQ----TSKPIQLATTQDPAVVFVP-CMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQ  419 (446)
Q Consensus       345 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~  419 (446)
                      .    .....    ......+.+. ++..++++ ....+++||+.+++.+..+.+|.+.|++++| |+   |++++.|+.
T Consensus       288 ~----~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~  358 (615)
T 1pgu_A          288 Q----KWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP---LISGSYDGR  358 (615)
T ss_dssp             E----EEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT---TEEEETTSC
T ss_pred             E----EEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCe
Confidence            1    11111    1222334443 55555554 5578999999999999999999999999999 88   888888888


Q ss_pred             EEEeCCC
Q 013274          420 ILVWCPS  426 (446)
Q Consensus       420 v~vW~~~  426 (446)
                      |++|++.
T Consensus       359 i~~w~~~  365 (615)
T 1pgu_A          359 IMEWSSS  365 (615)
T ss_dssp             EEETTTT
T ss_pred             EEEEEch
Confidence            8888865

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-31  Score=262.68  Aligned_cols=268  Identities=15%  Similarity=0.128  Sum_probs=205.2

Q ss_pred             CccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEE
Q 013274           42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT  121 (446)
Q Consensus        42 H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s  121 (446)
                      -...|.+|+|+| ||+++||||.|++|+  |.+.+..                    ..||...|.++.++| ++     
T Consensus        14 ~~~~v~sv~~Sp-DG~~iASas~D~TV~--d~~~~~~--------------------l~gh~~~v~~V~FsP-dg-----   64 (588)
T 2j04_A           14 FEDWKNNLTWAR-DGTLYLTTFPDISIG--QPKYAKD--------------------INCNSKNLFHVKEFP-LE-----   64 (588)
T ss_dssp             CSSSSCCEEECT-TSCEEEECSSSEEEE--EECCCSC--------------------CSSBGGGTEEEEEEC-CC-----
T ss_pred             hhccEEEEEECC-CCCEEEEEcCCceee--cccccce--------------------ecCCCccEEEEEECC-CC-----
Confidence            357899999997 789999999999999  7554321                    148999999999998 55     


Q ss_pred             EeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCC-----CeEEE
Q 013274          122 GSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD-----GIMTV  196 (446)
Q Consensus       122 ~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~-----~v~sv  196 (446)
                        .|+++++|+..... ..++.....+..++++|++   .+||+++.|+.|++||.++  ++..+. |..     .|.++
T Consensus        65 --~~~~~~~~~~~~~~-~~~~~~~~~V~~vawSPdG---~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~sv  135 (588)
T 2j04_A           65 --FENKLDFELAQQNG-LLNSQPVCYPRVCKPSPID---DWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCF  135 (588)
T ss_dssp             --CCCTTTTSCCCSSC-SSTTSCSCCEEEEEECSSS---SCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEE
T ss_pred             --CcceEEEEeCCCce-EeecCCCCcEEEEEECCCC---CEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEE
Confidence              56777777654322 2233335678899999854   5899999999999999654  666666 665     49999


Q ss_pred             EEecCCCeEEEEeeCCCcEEEEEccCCce-------eEEeecccccccCCCcccccceeeccccccCCCCCcCCCCcccc
Q 013274          197 EWSTSSEWILVTGGCDGAIRFWDIRRAGC-------FRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKR  269 (446)
Q Consensus       197 ~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (446)
                      +|||+++. |++|+.||+|+|||+.++..       +..+.                                       
T Consensus       136 afSPDG~~-LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~---------------------------------------  175 (588)
T 2j04_A          136 EWNPIESS-IVVGNEDGELQFFSIRKNSENTPEFYFESSIR---------------------------------------  175 (588)
T ss_dssp             EECSSSSC-EEEEETTSEEEEEECCCCTTTCCCCEEEEEEE---------------------------------------
T ss_pred             EEcCCCCE-EEEEcCCCEEEEEECCCCccccccceeeeeee---------------------------------------
Confidence            99999986 79999999999999876421       01000                                       


Q ss_pred             ccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeee
Q 013274          270 SANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFE  349 (446)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~  349 (446)
                                                       ....+|.++|.+++|+|||  +++++.|++|++||+.++.... ...
T Consensus       176 ---------------------------------~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~-~~~  219 (588)
T 2j04_A          176 ---------------------------------LSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQP-VSR  219 (588)
T ss_dssp             ---------------------------------CSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCC-CEE
T ss_pred             ---------------------------------cccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcccc-cee
Confidence                                             0013678899999999999  8889999999999998765210 011


Q ss_pred             EEE-eecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEE--cCCCCEEEEeeCCCcEEEeCCC
Q 013274          350 TVR-LQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCF--SSQDQELYTGGNDRQILVWCPS  426 (446)
Q Consensus       350 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~f--Spd~~~lvtgs~D~~v~vW~~~  426 (446)
                      .+. .+...+..++++  +..+++++...+++||+.+++......||.+.|++++|  |||++.|++++.||+ |||..+
T Consensus       220 tL~~~h~~~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          220 MIQNASRRKITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             EEECCCSSCCCCEEEE--TTEEEEECSSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred             eecccccCcEEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence            121 233456667777  47888888889999999888775555489999999999  999999999999999 999875

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-31  Score=279.66  Aligned_cols=261  Identities=19%  Similarity=0.317  Sum_probs=201.2

Q ss_pred             eEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeec-C
Q 013274           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV-D  115 (446)
Q Consensus        37 ~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~-~  115 (446)
                      .++.+|.+.|++++|+| ++++|++|+.||+|+|||+.++..          ..     .....+|...|.++.|++. +
T Consensus         3 ~~l~gH~~~V~~l~~s~-dg~~latg~~dg~I~vwd~~~~~~----------~~-----~~~l~~h~~~V~~l~~s~~~~   66 (753)
T 3jro_A            3 VIANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETH----------KL-----IDTLTGHEGPVWRVDWAHPKF   66 (753)
T ss_dssp             -----CCCCEEEECCCS-SSCCEEEEETTTEEEEEEEETTEE----------EE-----EEEECCCSSCEEEEEECCTTS
T ss_pred             eecccCcceeEEEEECC-CCCeEEEEECCCcEEEEecCCCCC----------cc-----ceeccCCcCceEEEEecCCCC
Confidence            35689999999999997 578899999999999999874321          00     1223589999999999763 2


Q ss_pred             CcEEEEEeCCCeEEEEECCCCe--eeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc--eeeeeeCCC
Q 013274          116 TGLFVTGSYDHYVKVWDTNCTR--VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA--ISQTLSGHR  190 (446)
Q Consensus       116 ~~~l~s~s~D~~i~iWd~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~--~~~~l~~h~  190 (446)
                      +.+|++|+.|++|++||+.+++  .+..+. +.+.+.++.+++... ..++++|+.|+.|++||++++.  ....+.+|.
T Consensus        67 ~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~-~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~  145 (753)
T 3jro_A           67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEY-GPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA  145 (753)
T ss_dssp             CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGG-CSEEEEEETTSEEEEEECCSSSCCCCEEEECCS
T ss_pred             CCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCC-CCEEEEEeCCCcEEEEEeecCCCcceeEeecCC
Confidence            8899999999999999999886  333333 456688888887521 4589999999999999998873  455678999


Q ss_pred             CCeEEEEEecC-------------CCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCC
Q 013274          191 DGIMTVEWSTS-------------SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQ  257 (446)
Q Consensus       191 ~~v~sv~~s~~-------------~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (446)
                      ..|.++.|+|.             ++ .+++|+.||+|++||++++.....+                            
T Consensus       146 ~~v~~l~~~p~~~~~~~~~~~~~d~~-~l~sgs~dg~I~iwd~~~~~~~~~~----------------------------  196 (753)
T 3jro_A          146 IGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVL----------------------------  196 (753)
T ss_dssp             SCEEEEEECCCC---------CGGGC-CEEEEETTSCEEEEEEETTTTEEEE----------------------------
T ss_pred             CceEEEEecCcccccccccccCCCCC-EEEEEECCCeEEEEeccCCccccee----------------------------
Confidence            99999999994             55 4789999999999999764211000                            


Q ss_pred             CCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccC---CCEEEEeecCCcEE
Q 013274          258 NSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED---GMYLLSAGSDSRIR  334 (446)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~d---g~~l~sgs~D~~i~  334 (446)
                                                                  .....+|.++|++++|+|+   |.+|++|+.|++|+
T Consensus       197 --------------------------------------------~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~  232 (753)
T 3jro_A          197 --------------------------------------------ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI  232 (753)
T ss_dssp             --------------------------------------------EEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEE
T ss_pred             --------------------------------------------eeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEE
Confidence                                                        0012467888999999999   89999999999999


Q ss_pred             EEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEe
Q 013274          335 LWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTG  414 (446)
Q Consensus       335 lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtg  414 (446)
                      +||+.++.....                                        .......+|...|++++|+||+++|++|
T Consensus       233 iwd~~~~~~~~~----------------------------------------~~~~~~~~~~~~v~~l~~spdg~~l~s~  272 (753)
T 3jro_A          233 IWTQDNEQGPWK----------------------------------------KTLLKEEKFPDVLWRASWSLSGNVLALS  272 (753)
T ss_dssp             EEEESSSSSCCB----------------------------------------CCBSSSSCCSSCCCCEEECTTTCCEEEE
T ss_pred             EecCCCCCCcce----------------------------------------eEEeccCCCCCceEEEEEcCCCCEEEEE
Confidence            999987532100                                        0011224588899999999999999999


Q ss_pred             eCCCcEEEeCCCC
Q 013274          415 GNDRQILVWCPSR  427 (446)
Q Consensus       415 s~D~~v~vW~~~~  427 (446)
                      +.|+.|+||++..
T Consensus       273 s~Dg~I~vwd~~~  285 (753)
T 3jro_A          273 GGDNKVTLWKENL  285 (753)
T ss_dssp             CSSSCEECCBCCS
T ss_pred             cCCCEEEEEecCC
Confidence            9999999999874

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.98  E-value=9.2e-30  Score=269.76  Aligned_cols=286  Identities=15%  Similarity=0.245  Sum_probs=220.1

Q ss_pred             EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (446)
Q Consensus        38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~  117 (446)
                      .+.+|.+.|++++|+| ++++|++|+.||+|++||++++...                 ....+|...|.++.|+| ++.
T Consensus        50 ~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~-----------------~~~~~~~~~v~~~~~s~-~~~  110 (814)
T 3mkq_A           50 SIQVTETPVRAGKFIA-RKNWIIVGSDDFRIRVFNYNTGEKV-----------------VDFEAHPDYIRSIAVHP-TKP  110 (814)
T ss_dssp             EEECCSSCEEEEEEEG-GGTEEEEEETTSEEEEEETTTCCEE-----------------EEEECCSSCEEEEEECS-SSS
T ss_pred             EEecCCCcEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEE-----------------EEEecCCCCEEEEEEeC-CCC
Confidence            4568999999999997 5789999999999999999865421                 12247899999999987 788


Q ss_pred             EEEEEeCCCeEEEEECCCC-eeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCC-CCeE
Q 013274          118 LFVTGSYDHYVKVWDTNCT-RVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHR-DGIM  194 (446)
Q Consensus       118 ~l~s~s~D~~i~iWd~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~-~~v~  194 (446)
                      +|++++.|++|++||+.++ .....+. +.+.+.+++++|.  +..++++++.|+.|++||+.++.....+..|. ..+.
T Consensus       111 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~  188 (814)
T 3mkq_A          111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK--DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN  188 (814)
T ss_dssp             EEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETT--EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCC
T ss_pred             EEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEE
Confidence            9999999999999999876 5555444 4456788888873  34589999999999999999988877777654 8999


Q ss_pred             EEEEec--CCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccC
Q 013274          195 TVEWST--SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSAN  272 (446)
Q Consensus       195 sv~~s~--~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (446)
                      +++|+|  +++. +++++.||.|++||++++.+...+                                           
T Consensus       189 ~~~~~~~~~~~~-l~~~~~dg~i~~~d~~~~~~~~~~-------------------------------------------  224 (814)
T 3mkq_A          189 YVDYYPLPDKPY-MITASDDLTIKIWDYQTKSCVATL-------------------------------------------  224 (814)
T ss_dssp             EEEECCSTTCCE-EEEECTTSEEEEEETTTTEEEEEE-------------------------------------------
T ss_pred             EEEEEECCCCCE-EEEEeCCCEEEEEECCCCcEEEEE-------------------------------------------
Confidence            999999  7774 789999999999999876543222                                           


Q ss_pred             CCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEE
Q 013274          273 GNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR  352 (446)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~  352 (446)
                                                       .+|.+.|++++|+|+|.+|++++.|++|++||+.+++...    ...
T Consensus       225 ---------------------------------~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~----~~~  267 (814)
T 3mkq_A          225 ---------------------------------EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK----TLN  267 (814)
T ss_dssp             ---------------------------------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEE----EEC
T ss_pred             ---------------------------------cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE----Eee
Confidence                                             2466779999999999999999999999999998865321    222


Q ss_pred             eecCCCeEEEEcCCCc--EEEEeCCCceEEEEeecCce------------------------------------------
Q 013274          353 LQTSKPIQLATTQDPA--VVFVPCMTAVKAFDIWSGKT------------------------------------------  388 (446)
Q Consensus       353 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~~~~~~------------------------------------------  388 (446)
                      ........++++|++.  +++.+..+.+.+|++.....                                          
T Consensus       268 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (814)
T 3mkq_A          268 VGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSL  347 (814)
T ss_dssp             CSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCC
T ss_pred             cCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCcccee
Confidence            2233455667777765  45556666677776543211                                          


Q ss_pred             -EEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274          389 -CLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS  426 (446)
Q Consensus       389 -~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~  426 (446)
                       ...+..|...+.+++|||||++|++++ |+.+.+|+..
T Consensus       348 ~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~  385 (814)
T 3mkq_A          348 QTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTAL  385 (814)
T ss_dssp             CCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETT
T ss_pred             eeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECc
Confidence             122344566788899999999888888 8888888865

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.98  E-value=2.9e-30  Score=250.72  Aligned_cols=261  Identities=10%  Similarity=0.056  Sum_probs=174.2

Q ss_pred             EEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEe------cCCceEEeeeccC-----CCCceEEEEeeCCCcEEEEe
Q 013274          108 SAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK------MPGKVYRTAMSPL-----AASHMLIAAGTEDVQVRLCD  176 (446)
Q Consensus       108 ~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~------~~~~~~~~~~~~~-----~~~~~~lasgs~d~~v~vwd  176 (446)
                      .+.+++.++.++++++.|++|+|||+.++.......      +.+.+.+++|+|.     ..+..+||+|+.|++|+|||
T Consensus        93 ~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd  172 (393)
T 4gq1_A           93 NVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWR  172 (393)
T ss_dssp             ----CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEE
T ss_pred             ceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEE
Confidence            344555577899999999999999998887654322      3456888999873     22567999999999999999


Q ss_pred             CCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccC
Q 013274          177 IASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAG  256 (446)
Q Consensus       177 ~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (446)
                      ++++..+..+.+|...|.+|+|+|++..+|++++.|++|++||++++..............                   
T Consensus       173 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~-------------------  233 (393)
T 4gq1_A          173 LTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKN-------------------  233 (393)
T ss_dssp             EETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSC-------------------
T ss_pred             CCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCccc-------------------
Confidence            9999888888899999999999999876789999999999999987654322211000000                   


Q ss_pred             CCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEc-cCCCEEEEeecCCcEEE
Q 013274          257 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVT-EDGMYLLSAGSDSRIRL  335 (446)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~sgs~D~~i~l  335 (446)
                                      .........                .........+|...+.++.|+ +||+.|++++.|+++++
T Consensus       234 ----------------~~~~s~~~~----------------~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~v  281 (393)
T 4gq1_A          234 ----------------PWLLTLNTL----------------PLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLR  281 (393)
T ss_dssp             ----------------CCSEEEESG----------------GGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEE
T ss_pred             ----------------ceEEecccc----------------cceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEE
Confidence                            000000000                000001124677889999987 89999999999999999


Q ss_pred             EecCcCceeeeeeeEE--------------Eee-cCCCeEEEEcC--CCcEEEEeC-CCceEEEEeecCceEEEeccccc
Q 013274          336 WDVESGRNTLVNFETV--------------RLQ-TSKPIQLATTQ--DPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYE  397 (446)
Q Consensus       336 Wd~~~~~~~~~~~~~~--------------~~~-~~~~~~~~~~~--~~~~~~~~~-~~~~~~~d~~~~~~~~~l~gH~~  397 (446)
                      ||+.+++.... +...              ... ........+.+  +..++++++ ...+++||+.+++....+.+|..
T Consensus       282 wd~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~  360 (393)
T 4gq1_A          282 WNLFANNDYNE-ISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM  360 (393)
T ss_dssp             EEC--------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS
T ss_pred             EECccCCCCce-EeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC
Confidence            99987542111 0000              000 01111223333  233444444 35899999999999999999999


Q ss_pred             ceEEEEEcCCCCEEEEeeCCCcE
Q 013274          398 YVNCCCFSSQDQELYTGGNDRQI  420 (446)
Q Consensus       398 ~v~~~~fSpd~~~lvtgs~D~~v  420 (446)
                      .|++|+|||||++||+++.|+.+
T Consensus       361 ~V~svafspdG~~LA~as~~Gv~  383 (393)
T 4gq1_A          361 PIVDFCWHQDGSHLAIATEGSVL  383 (393)
T ss_dssp             CEEEEEECTTSSEEEEEESSEEE
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeE
Confidence            99999999999999999987753

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.98  E-value=1.5e-29  Score=250.14  Aligned_cols=299  Identities=12%  Similarity=0.072  Sum_probs=214.3

Q ss_pred             ccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCc---CCCC-CCccc-ccc----------------------------
Q 013274           43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRAT---DYEG-GGHIA-KHR----------------------------   89 (446)
Q Consensus        43 ~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~---~~~~-~~~~~-~~~----------------------------   89 (446)
                      ..++++++|++ +|++|+++ .++.|++||+.++.   .... ..... ...                            
T Consensus         4 ~~p~~~v~~s~-dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (450)
T 2vdu_B            4 IHPLQNLLTSR-DGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG   81 (450)
T ss_dssp             ECCCCEEEECS-SSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred             cccEEEEEecC-CCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence            35789999997 56766555 68899999998776   1100 00000 000                            


Q ss_pred             -------ceEEeccccccCccccEeEEEEeecCCcEE-EEEeCCCeEEEEECC--CCeeeEEEe---cCCceEEeeeccC
Q 013274           90 -------SVFVVDKQHEHGHKYAISSAIWYPVDTGLF-VTGSYDHYVKVWDTN--CTRVVMNFK---MPGKVYRTAMSPL  156 (446)
Q Consensus        90 -------~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l-~s~s~D~~i~iWd~~--~~~~~~~~~---~~~~~~~~~~~~~  156 (446)
                             ...........+|...|.++.|+| ++++| ++++.|++|++||+.  ++..+..+.   +...+.++++++.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  160 (450)
T 2vdu_B           82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTS-DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAED  160 (450)
T ss_dssp             ------------------CCCCCEEEEEECT-TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTT
T ss_pred             ccccccCccccCCCCCCCccCCceEEEEEcC-CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCC
Confidence                   000000111235777899999987 67775 999999999999998  777776663   4566888888875


Q ss_pred             CCCceEEEEeeCCCcEEEEeCCCCceee----eeeCCCCCeEEEEEecC---CCeEEEEeeCCCcEEEEEccCCceeEEe
Q 013274          157 AASHMLIAAGTEDVQVRLCDIASGAISQ----TLSGHRDGIMTVEWSTS---SEWILVTGGCDGAIRFWDIRRAGCFRVL  229 (446)
Q Consensus       157 ~~~~~~lasgs~d~~v~vwd~~~~~~~~----~l~~h~~~v~sv~~s~~---~~~~l~S~s~Dg~I~iWd~~~~~~~~~~  229 (446)
                         ..+|++|+.++.|++|++.++....    .+.+|.+.|.+++|+|+   ++ +|++|+.|++|++||++++.++..+
T Consensus       161 ---~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~  236 (450)
T 2vdu_B          161 ---DTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQ-FIITSDRDEHIKISHYPQCFIVDKW  236 (450)
T ss_dssp             ---SSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCE-EEEEEETTSCEEEEEESCTTCEEEE
T ss_pred             ---CCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCc-EEEEEcCCCcEEEEECCCCceeeee
Confidence               3588999999999999998886544    78899999999999999   76 4789999999999999765432211


Q ss_pred             ecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccc
Q 013274          230 DQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHY  309 (446)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  309 (446)
                                                                                                 ..+|.
T Consensus       237 ---------------------------------------------------------------------------~~~h~  241 (450)
T 2vdu_B          237 ---------------------------------------------------------------------------LFGHK  241 (450)
T ss_dssp             ---------------------------------------------------------------------------CCCCS
T ss_pred             ---------------------------------------------------------------------------ecCCC
Confidence                                                                                       13577


Q ss_pred             cCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEE----------------------eecCCCeEEEEcCCC
Q 013274          310 GAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR----------------------LQTSKPIQLATTQDP  367 (446)
Q Consensus       310 ~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~  367 (446)
                      +.|.+++|+ +|.+|++|+.|++|++||+.+++.... +....                      ........+++.+++
T Consensus       242 ~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~  319 (450)
T 2vdu_B          242 HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLST-FDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL  319 (450)
T ss_dssp             SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEE-EECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSS
T ss_pred             CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeee-ecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCC
Confidence            889999999 999999999999999999998764221 11000                      001223457888888


Q ss_pred             cEEEEeC--CCceEEEEe--ecC---ceEEEecccccceEEEEEcCCCCEEEEeeC------CCcEEEeCCC
Q 013274          368 AVVFVPC--MTAVKAFDI--WSG---KTCLTFRGHYEYVNCCCFSSQDQELYTGGN------DRQILVWCPS  426 (446)
Q Consensus       368 ~~~~~~~--~~~~~~~d~--~~~---~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~------D~~v~vW~~~  426 (446)
                      ..+++++  ...+++|++  .++   +.+..+.+| +.|.+++|+|++.+++.++.      +..|++|..+
T Consensus       320 ~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~  390 (450)
T 2vdu_B          320 PFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN  390 (450)
T ss_dssp             SEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred             CEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence            8887775  468999999  555   567788898 88999999996544444443      5668999654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=7.9e-30  Score=244.25  Aligned_cols=251  Identities=14%  Similarity=0.137  Sum_probs=176.7

Q ss_pred             CCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEE
Q 013274           40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF  119 (446)
Q Consensus        40 ~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l  119 (446)
                      ++|.+.|++++|+| ++++|++|+.|+ ++|||+++....            ..       .+...+..+.+.+....++
T Consensus        16 ~~h~~~V~~v~fs~-dg~~la~g~~~~-~~iw~~~~~~~~------------~~-------~~~~~~~~~~~~~~~~~~~   74 (355)
T 3vu4_A           16 NHVSNPVTDYEFNQ-DQSCLILSTLKS-FEIYNVHPVAHI------------MS-------QEMRHLSKVRMLHRTNYVA   74 (355)
T ss_dssp             ---CCCCCEEEECT-TSSEEEEECSSE-EEEEEETTEEEE------------EE-------EECSCCCEEEECTTSSEEE
T ss_pred             ccCCCceEEEEECC-CCCEEEEEcCCE-EEEEecCCccee------------ee-------eecCCeEEEEEcCCCCEEE
Confidence            68999999999997 678999888775 889998754311            00       0111244555555334444


Q ss_pred             EEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC-ceeeeeeCCCCCeEEEEE
Q 013274          120 VTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AISQTLSGHRDGIMTVEW  198 (446)
Q Consensus       120 ~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~-~~~~~l~~h~~~v~sv~~  198 (446)
                      ++++.|++|++||+.+++++..+.+...+..+.+.+.     .++.+ .|+.|++||+.++ +.+..+..   +...+++
T Consensus        75 ~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~-----~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~  145 (355)
T 3vu4_A           75 FVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSRE-----FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEF  145 (355)
T ss_dssp             EECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSS-----EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEE
T ss_pred             EEECCccEEEEEECCCCcEEEEEECCCceEEEEEcCC-----EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEE
Confidence            7888899999999999999998888888888887653     23333 3789999999998 77776665   4445566


Q ss_pred             ecCCCeEEEE-eeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCcee
Q 013274          199 STSSEWILVT-GGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVR  277 (446)
Q Consensus       199 s~~~~~~l~S-~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (446)
                      ++  ..++++ |+.||.|++||++++......+...                                            
T Consensus       146 s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~--------------------------------------------  179 (355)
T 3vu4_A          146 SN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGV--------------------------------------------  179 (355)
T ss_dssp             ET--TEEEEEESSCTTCEEEEECCC-------------------------------------------------------
T ss_pred             Ec--cEEEEeCCCcCcEEEEEECCCCCccccccccc--------------------------------------------
Confidence            76  444333 7899999999998653211000000                                            


Q ss_pred             ecccceeecCCccccccCCCcccc-cccccccccCeEEEEEccCCCEEEEeecCCc-EEEEecCcCceeeeeeeEEEeec
Q 013274          278 QSSVGRIPAKGSVRQRLHPGMLSS-QDRATAHYGAVTGLKVTEDGMYLLSAGSDSR-IRLWDVESGRNTLVNFETVRLQT  355 (446)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~-i~lWd~~~~~~~~~~~~~~~~~~  355 (446)
                                       ....+.+ .....+|.++|++++|+|+|++|+||+.|++ |++||+.+++.            
T Consensus       180 -----------------~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~------------  230 (355)
T 3vu4_A          180 -----------------QQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL------------  230 (355)
T ss_dssp             ------------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCE------------
T ss_pred             -----------------cccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcE------------
Confidence                             0000000 1123578999999999999999999999999 99999986532            


Q ss_pred             CCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEec-c-cccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC
Q 013274          356 SKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFR-G-HYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH  428 (446)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~-g-H~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~  428 (446)
                                                       +.++. + |.+.|++++||||+++|++|+.|++|+||+++..
T Consensus       231 ---------------------------------~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          231 ---------------------------------VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             ---------------------------------EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred             ---------------------------------EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence                                             22344 5 9999999999999999999999999999998754

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.97  E-value=5.7e-30  Score=238.97  Aligned_cols=210  Identities=18%  Similarity=0.296  Sum_probs=167.6

Q ss_pred             cCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCC--eeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEe
Q 013274          100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT--RVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCD  176 (446)
Q Consensus       100 ~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd  176 (446)
                      .+|...|.++.|+| ++++||||+.|++|+|||+...  +++..+. +.+.+.+++|++.. +..+|++|+.|+.|++||
T Consensus         6 ~~h~~~V~~~~~s~-~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~-~g~~l~s~s~D~~v~iWd   83 (297)
T 2pm7_B            6 NAHNEMIHDAVMDY-YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-FGTILASCSYDGKVMIWK   83 (297)
T ss_dssp             CSCSSCEEEEEECT-TSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGG-GCSEEEEEETTTEEEEEE
T ss_pred             cCCcCceEEEEECC-CCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCC-cCCEEEEEcCCCEEEEEE
Confidence            58999999999886 7899999999999999999753  4455554 45668888887531 235899999999999999


Q ss_pred             CCCCc--eeeeeeCCCCCeEEEEEecC--CCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccc
Q 013274          177 IASGA--ISQTLSGHRDGIMTVEWSTS--SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKS  252 (446)
Q Consensus       177 ~~~~~--~~~~l~~h~~~v~sv~~s~~--~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (446)
                      ++++.  .+..+.+|...|.+++|+|+  ++ +|++++.|++|++||++......                         
T Consensus        84 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~-~l~s~s~d~~v~~wd~~~~~~~~-------------------------  137 (297)
T 2pm7_B           84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGP-MLLVASSDGKVSVVEFKENGTTS-------------------------  137 (297)
T ss_dssp             BSSSCBCCCEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEEBCSSSCBC-------------------------
T ss_pred             cCCCceEEEEEeecCCCceeEEEeCcCCCCc-EEEEEECCCcEEEEEecCCCcee-------------------------
Confidence            99874  55678899999999999997  55 57999999999999987532100                         


Q ss_pred             cccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccC------------
Q 013274          253 LSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED------------  320 (446)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~d------------  320 (446)
                                                                       .....+|...|.+++|+|+            
T Consensus       138 -------------------------------------------------~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~  168 (297)
T 2pm7_B          138 -------------------------------------------------PIIIDAHAIGVNSASWAPATIEEDGEHNGTK  168 (297)
T ss_dssp             -------------------------------------------------CEEEECCSSCEEEEEECCCC-----------
T ss_pred             -------------------------------------------------eeeeecccCccceEeecCCcccccccCCCCC
Confidence                                                             0012357778999999987            


Q ss_pred             -CCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccce
Q 013274          321 -GMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYV  399 (446)
Q Consensus       321 -g~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v  399 (446)
                       +++|++|+.|++|++||+.++....                                         ....+|.+|.+.|
T Consensus       169 ~~~~l~sgs~D~~v~lwd~~~~~~~~-----------------------------------------~~~~~l~~H~~~V  207 (297)
T 2pm7_B          169 ESRKFVTGGADNLVKIWKYNSDAQTY-----------------------------------------VLESTLEGHSDWV  207 (297)
T ss_dssp             -CCEEEEEETTSCEEEEEEETTTTEE-----------------------------------------EEEEEECCCSSCE
T ss_pred             CcceEEEEcCCCcEEEEEEcCCCceE-----------------------------------------EEEEEecCCCCce
Confidence             5799999999999999987643210                                         0124678999999


Q ss_pred             EEEEEcCCC---CEEEEeeCCCcEEEeCCCC
Q 013274          400 NCCCFSSQD---QELYTGGNDRQILVWCPSR  427 (446)
Q Consensus       400 ~~~~fSpd~---~~lvtgs~D~~v~vW~~~~  427 (446)
                      .+++|+|++   ++|+|||.|++|+||+++.
T Consensus       208 ~~v~~sp~~~~~~~las~s~D~~v~iWd~~~  238 (297)
T 2pm7_B          208 RDVAWSPTVLLRSYMASVSQDRTCIIWTQDN  238 (297)
T ss_dssp             EEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             EEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence            999999995   8999999999999998865

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=7.9e-30  Score=235.99  Aligned_cols=193  Identities=12%  Similarity=0.079  Sum_probs=138.9

Q ss_pred             CCcEEEEEe--CCCeEEEEEC-CCCeeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCC
Q 013274          115 DTGLFVTGS--YDHYVKVWDT-NCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHR  190 (446)
Q Consensus       115 ~~~~l~s~s--~D~~i~iWd~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~  190 (446)
                      +++++.+++  .|++|++|++ .+++.+..+.. +..+..++|++...+..+|++|+.|++|+|||++++++++++.+|.
T Consensus       144 ~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~  223 (356)
T 2w18_A          144 KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDD  223 (356)
T ss_dssp             TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC
T ss_pred             CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCC
Confidence            444555533  6999999999 45776665443 3345667777744456799999999999999999999999998754


Q ss_pred             C---CeEEEEEecCCCeE-----------EEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccC
Q 013274          191 D---GIMTVEWSTSSEWI-----------LVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAG  256 (446)
Q Consensus       191 ~---~v~sv~~s~~~~~~-----------l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (446)
                      .   .+.+++|+|+++.+           ++||+.|++|++||..+++++..+....                       
T Consensus       224 ~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~-----------------------  280 (356)
T 2w18_A          224 SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCL-----------------------  280 (356)
T ss_dssp             ---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECC-----------------------
T ss_pred             cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeec-----------------------
Confidence            3   57778999998753           3678999999999998876654321000                       


Q ss_pred             CCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEE
Q 013274          257 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW  336 (446)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lW  336 (446)
                                                                      ..+|.+.+.+..+  ++.++++|+.|++||||
T Consensus       281 ------------------------------------------------p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIW  310 (356)
T 2w18_A          281 ------------------------------------------------PPGQAGRFLEGDV--KDHCAAAILTSGTIAIW  310 (356)
T ss_dssp             ------------------------------------------------CTTCCCCEEEEEE--ETTEEEEEETTSCEEEE
T ss_pred             ------------------------------------------------cCCCcceeEcccc--CCCEEEEEcCCCcEEEE
Confidence                                                            0133333433344  38899999999999999


Q ss_pred             ecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceE-EEEEcCCCCEEEEee
Q 013274          337 DVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVN-CCCFSSQDQELYTGG  415 (446)
Q Consensus       337 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~-~~~fSpd~~~lvtgs  415 (446)
                      |+.+++                                             .+.+|.+|...+. +++|||||++|+|||
T Consensus       311 Dl~tGk---------------------------------------------~l~tL~gH~~~vvs~vafSPDG~~LaSGS  345 (356)
T 2w18_A          311 DLLLGQ---------------------------------------------CTALLPPVSDQHWSFVKWSGTDSHLLAGQ  345 (356)
T ss_dssp             ETTTCS---------------------------------------------EEEEECCC--CCCCEEEECSSSSEEEEEC
T ss_pred             ECCCCc---------------------------------------------EEEEecCCCCCeEEEEEECCCCCEEEEEE
Confidence            998754                                             2356678887665 689999999999999


Q ss_pred             CCCcEEEeCC
Q 013274          416 NDRQILVWCP  425 (446)
Q Consensus       416 ~D~~v~vW~~  425 (446)
                      .|++||||++
T Consensus       346 ~D~TIklWd~  355 (356)
T 2w18_A          346 KDGNIFVYHY  355 (356)
T ss_dssp             TTSCEEEEEE
T ss_pred             CCCcEEEecC
Confidence            9999999985

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.97  E-value=4.6e-29  Score=260.07  Aligned_cols=248  Identities=17%  Similarity=0.292  Sum_probs=198.8

Q ss_pred             ccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCe-----eeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcE
Q 013274           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR-----VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQV  172 (446)
Q Consensus        99 ~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v  172 (446)
                      ..+|...|+++.+++.++++|+|||.|++|++||+....     ....+. +.+.+.++++++.   ..+|++|+.|+.|
T Consensus       378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~---g~~l~sgs~Dg~v  454 (694)
T 3dm0_A          378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSD---GQFALSGSWDGEL  454 (694)
T ss_dssp             EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTT---SSEEEEEETTSEE
T ss_pred             cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCC---CCEEEEEeCCCcE
Confidence            458999999999988777899999999999999997532     233333 4456788888874   4589999999999


Q ss_pred             EEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccc
Q 013274          173 RLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKS  252 (446)
Q Consensus       173 ~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (446)
                      ++||+.++.....+.+|.+.|.+++|+|+++. |+||+.|++|++||+.........                       
T Consensus       455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~s~D~~i~iwd~~~~~~~~~~-----------------------  510 (694)
T 3dm0_A          455 RLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQ-IVSASRDRTIKLWNTLGECKYTIS-----------------------  510 (694)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECTTSSC-EEEEETTSCEEEECTTSCEEEEEC-----------------------
T ss_pred             EEEECCCCcceeEEeCCCCCEEEEEEeCCCCE-EEEEeCCCEEEEEECCCCcceeec-----------------------
Confidence            99999999999999999999999999999986 789999999999997542111000                       


Q ss_pred             cccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCC--CEEEEeecC
Q 013274          253 LSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG--MYLLSAGSD  330 (446)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg--~~l~sgs~D  330 (446)
                                                                        ....+|...|.+++|+|++  .+|++|+.|
T Consensus       511 --------------------------------------------------~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d  540 (694)
T 3dm0_A          511 --------------------------------------------------EGGEGHRDWVSCVRFSPNTLQPTIVSASWD  540 (694)
T ss_dssp             --------------------------------------------------SSTTSCSSCEEEEEECSCSSSCEEEEEETT
T ss_pred             --------------------------------------------------cCCCCCCCcEEEEEEeCCCCcceEEEEeCC
Confidence                                                              0013577889999999987  589999999


Q ss_pred             CcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCC
Q 013274          331 SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQ  409 (446)
Q Consensus       331 ~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~  409 (446)
                      ++|++||+.+++..    ..+..+......++++|++..+++++. ..+++||+.+++.+..+..| ..|.+++|||++.
T Consensus       541 ~~v~vwd~~~~~~~----~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~  615 (694)
T 3dm0_A          541 KTVKVWNLSNCKLR----STLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHALCFSPNRY  615 (694)
T ss_dssp             SCEEEEETTTCCEE----EEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS-SCEEEEEECSSSS
T ss_pred             CeEEEEECCCCcEE----EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC-CcEEEEEEcCCCc
Confidence            99999999876532    122233455667899999998888754 68999999999888877654 5799999999998


Q ss_pred             EEEEeeCCCcEEEeCCCCCC
Q 013274          410 ELYTGGNDRQILVWCPSRHI  429 (446)
Q Consensus       410 ~lvtgs~D~~v~vW~~~~~~  429 (446)
                      +|++++ |+.|+||+++...
T Consensus       616 ~l~~~~-~~~i~iwd~~~~~  634 (694)
T 3dm0_A          616 WLCAAT-EHGIKIWDLESKS  634 (694)
T ss_dssp             EEEEEE-TTEEEEEETTTTE
T ss_pred             EEEEEc-CCCEEEEECCCCC
Confidence            887765 5669999998653

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.97  E-value=2.8e-29  Score=243.36  Aligned_cols=260  Identities=13%  Similarity=0.172  Sum_probs=201.0

Q ss_pred             cccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCe------eeEEEe-cCCceEEeeeccC-CCCc---eEEEEe
Q 013274           98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR------VVMNFK-MPGKVYRTAMSPL-AASH---MLIAAG  166 (446)
Q Consensus        98 ~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~------~~~~~~-~~~~~~~~~~~~~-~~~~---~~lasg  166 (446)
                      ...+|...|+++.++|   .+|++|+.|++|++||+.+++      .+..+. +...+.++.+++. ..+.   .+|+++
T Consensus        11 ~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~   87 (397)
T 1sq9_A           11 AGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT   87 (397)
T ss_dssp             ESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             hhhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEE
Confidence            3468999999999976   699999999999999999887      444444 4566888888874 0113   689999


Q ss_pred             eCCCcEEEEeCCCCce-----eeeeeCC-----CCCeEEEEEe----cCCCeEEEEeeCCCcEEEEEccC------Ccee
Q 013274          167 TEDVQVRLCDIASGAI-----SQTLSGH-----RDGIMTVEWS----TSSEWILVTGGCDGAIRFWDIRR------AGCF  226 (446)
Q Consensus       167 s~d~~v~vwd~~~~~~-----~~~l~~h-----~~~v~sv~~s----~~~~~~l~S~s~Dg~I~iWd~~~------~~~~  226 (446)
                      +.|+.|++||++++..     ...+.+|     ...|.+++|+    |+++..|++++.||.|++||+++      ..++
T Consensus        88 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  167 (397)
T 1sq9_A           88 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL  167 (397)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred             cCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccccee
Confidence            9999999999999887     8888888     5999999999    98875378999999999999875      2111


Q ss_pred             EEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCccccccccc
Q 013274          227 RVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRAT  306 (446)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (446)
                      .                                                  ..+...+...              .....
T Consensus       168 ~--------------------------------------------------~~~~~~~~~~--------------~~~~~  183 (397)
T 1sq9_A          168 N--------------------------------------------------WSPTLELQGT--------------VESPM  183 (397)
T ss_dssp             C--------------------------------------------------CCCEEEEEEE--------------ECCSS
T ss_pred             e--------------------------------------------------ccCcceeeee--------------ecccc
Confidence            0                                                  0000000000              00012


Q ss_pred             ccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEe---e---cCCCeEEEEcCCCcEEEEeCC----C
Q 013274          307 AHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRL---Q---TSKPIQLATTQDPAVVFVPCM----T  376 (446)
Q Consensus       307 ~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~----~  376 (446)
                      .|...|.+++|+|++ +|++++.|+.|++||+.+++..    ..+..   +   ......+++++++..+++++.    .
T Consensus       184 ~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g  258 (397)
T 1sq9_A          184 TPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPL----YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFG  258 (397)
T ss_dssp             SSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEE----EEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEE
T ss_pred             CCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCcee----EEEeccccccccCCccceEEECCCCCEEEEEecCCCCc
Confidence            467789999999999 9999999999999999886432    12222   2   345567889999988888765    4


Q ss_pred             ceEEEEeecCceEEEecc-------------cccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCC
Q 013274          377 AVKAFDIWSGKTCLTFRG-------------HYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI  429 (446)
Q Consensus       377 ~~~~~d~~~~~~~~~l~g-------------H~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~  429 (446)
                      .+++||+.+++.+..+.+             |...|++++|+|++++|++|+.|+.|+||++....
T Consensus       259 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  324 (397)
T 1sq9_A          259 CITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE  324 (397)
T ss_dssp             EEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred             eEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCc
Confidence            899999999999999999             99999999999999999999999999999997654

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=9.2e-30  Score=250.70  Aligned_cols=257  Identities=15%  Similarity=0.198  Sum_probs=194.2

Q ss_pred             CccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCe-----------eeEEEecC-------------CceEEeeeccC
Q 013274          101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR-----------VVMNFKMP-------------GKVYRTAMSPL  156 (446)
Q Consensus       101 gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~-----------~~~~~~~~-------------~~~~~~~~~~~  156 (446)
                      .|...|.++.|+| ++++||+|+.|+.|+|||+.++.           +...+..+             +.+.++.+++.
T Consensus        26 ~~~~~V~~v~~s~-~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~  104 (447)
T 3dw8_B           26 AEADIISTVEFNH-SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ  104 (447)
T ss_dssp             CGGGSEEEEEECS-SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred             cccCcEEEEEECC-CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence            5778999999987 88999999999999999998766           34445433             55788888875


Q ss_pred             CCCceEEEEeeCCCcEEEEeCCCCcee---------------------------------------ee-eeCCCCCeEEE
Q 013274          157 AASHMLIAAGTEDVQVRLCDIASGAIS---------------------------------------QT-LSGHRDGIMTV  196 (446)
Q Consensus       157 ~~~~~~lasgs~d~~v~vwd~~~~~~~---------------------------------------~~-l~~h~~~v~sv  196 (446)
                      .. ..+|++++.|+.|++||+.++...                                       .. +.+|...|.++
T Consensus       105 ~~-~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  183 (447)
T 3dw8_B          105 KN-AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI  183 (447)
T ss_dssp             CS-SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred             CC-cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence            32 147888999999999999764331                                       12 36899999999


Q ss_pred             EEecCCCeEEEEeeCCCcEEEEEccCC-ceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCc
Q 013274          197 EWSTSSEWILVTGGCDGAIRFWDIRRA-GCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNG  275 (446)
Q Consensus       197 ~~s~~~~~~l~S~s~Dg~I~iWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (446)
                      +|+|+++. |++| .|++|++||+++. .++..+...                                           
T Consensus       184 ~~~~~~~~-l~s~-~d~~i~iwd~~~~~~~~~~~~~~-------------------------------------------  218 (447)
T 3dw8_B          184 SINSDYET-YLSA-DDLRINLWHLEITDRSFNIVDIK-------------------------------------------  218 (447)
T ss_dssp             EECTTSSE-EEEE-CSSEEEEEETTEEEEEEEEEECC-------------------------------------------
T ss_pred             EEcCCCCE-EEEe-CCCeEEEEECCCCCceeeeeecc-------------------------------------------
Confidence            99999885 6788 7999999999842 222221100                                           


Q ss_pred             eeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCC-CEEEEeecCCcEEEEecCcCceeeeeeeEEEee
Q 013274          276 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQ  354 (446)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~  354 (446)
                                                .....+|...|++++|+|++ .+|++|+.|++|++||+.+++........+..+
T Consensus       219 --------------------------~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  272 (447)
T 3dw8_B          219 --------------------------PANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEP  272 (447)
T ss_dssp             --------------------------CSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC
T ss_pred             --------------------------cccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccC
Confidence                                      00124678889999999999 999999999999999999865311001111111


Q ss_pred             cC------------CCeEEEEcCCCcEEEEeCCCceEEEEeec-CceEEEecccccc---------------eEEEEEcC
Q 013274          355 TS------------KPIQLATTQDPAVVFVPCMTAVKAFDIWS-GKTCLTFRGHYEY---------------VNCCCFSS  406 (446)
Q Consensus       355 ~~------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~l~gH~~~---------------v~~~~fSp  406 (446)
                      ..            ....++++|++.++++++...+++||+.+ ++.+.++.+|...               +..++|+|
T Consensus       273 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~  352 (447)
T 3dw8_B          273 EDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNG  352 (447)
T ss_dssp             -----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECT
T ss_pred             CCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECC
Confidence            11            45678899999988887668899999987 8888999999753               23499999


Q ss_pred             CCCEEEEeeCCCcEEEeCCCCCCC
Q 013274          407 QDQELYTGGNDRQILVWCPSRHIS  430 (446)
Q Consensus       407 d~~~lvtgs~D~~v~vW~~~~~~~  430 (446)
                      |+++|++|+.|+.|+||++.+...
T Consensus       353 ~~~~l~s~s~dg~v~iwd~~~~~~  376 (447)
T 3dw8_B          353 SDSVVMTGSYNNFFRMFDRNTKRD  376 (447)
T ss_dssp             TSSEEEEECSTTEEEEEETTTCCE
T ss_pred             CCCEEEEeccCCEEEEEEcCCCcc
Confidence            999999999999999999986643

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.97  E-value=1.5e-29  Score=241.87  Aligned_cols=254  Identities=15%  Similarity=0.195  Sum_probs=197.4

Q ss_pred             cCccccEeEEEEeec---CCcEEEEEeCCCeEEEEECCCCeeeEEEe------cCCceEEeeeccCCCC-ceEEEEeeCC
Q 013274          100 HGHKYAISSAIWYPV---DTGLFVTGSYDHYVKVWDTNCTRVVMNFK------MPGKVYRTAMSPLAAS-HMLIAAGTED  169 (446)
Q Consensus       100 ~gh~~~V~~~~~~~~---~~~~l~s~s~D~~i~iWd~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~~lasgs~d  169 (446)
                      .+|...|.++.++|.   ....+++++.|+.|++||+.+++.+..+.      ..+.+.++++++.... ..+|++|+.|
T Consensus        15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d   94 (366)
T 3k26_A           15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSR   94 (366)
T ss_dssp             CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETT
T ss_pred             cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCC
Confidence            589999999999973   23455556666699999999877665554      2356888899886432 5689999999


Q ss_pred             CcEEEEeCCCCceeeeeeCCCCCeEEEEEec-CCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCccccccee
Q 013274          170 VQVRLCDIASGAISQTLSGHRDGIMTVEWST-SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVS  248 (446)
Q Consensus       170 ~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~-~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (446)
                      +.|++||+++++.+..+.+|...|.++.|+| +++ +|++++.||.|++||+++++....+.                  
T Consensus        95 g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~------------------  155 (366)
T 3k26_A           95 GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPN-LLLSVSKDHALRLWNIQTDTLVAIFG------------------  155 (366)
T ss_dssp             CEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTT-EEEEEETTSCEEEEETTTTEEEEEEC------------------
T ss_pred             CEEEEEEchhceEeeeecCCCCcEEEEEECCCCCC-EEEEEeCCCeEEEEEeecCeEEEEec------------------
Confidence            9999999999999999999999999999999 665 58999999999999998765433221                  


Q ss_pred             eccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEee
Q 013274          249 ISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG  328 (446)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs  328 (446)
                                                                             ...+|...|.+++|+|++.+|++++
T Consensus       156 -------------------------------------------------------~~~~~~~~v~~~~~~~~~~~l~~~~  180 (366)
T 3k26_A          156 -------------------------------------------------------GVEGHRDEVLSADYDLLGEKIMSCG  180 (366)
T ss_dssp             -------------------------------------------------------STTSCSSCEEEEEECTTSSEEEEEE
T ss_pred             -------------------------------------------------------ccccccCceeEEEECCCCCEEEEec
Confidence                                                                   0125677899999999999999999


Q ss_pred             cCCcEEEEecCcCceeee------------------------eeeEEEeecCCCeEEEEcCCCcEEEEeC-CCceEEEEe
Q 013274          329 SDSRIRLWDVESGRNTLV------------------------NFETVRLQTSKPIQLATTQDPAVVFVPC-MTAVKAFDI  383 (446)
Q Consensus       329 ~D~~i~lWd~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~  383 (446)
                      .|+.|++||+.+++....                        .+.....+......+++.  +..+++++ ...+++||+
T Consensus       181 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~  258 (366)
T 3k26_A          181 MDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKP  258 (366)
T ss_dssp             TTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEE
T ss_pred             CCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeC
Confidence            999999999987542100                        000000123334455565  45666554 468999999


Q ss_pred             ecCce--------------EEEecccccceEEEEEcCC--CCEEEEeeCCCcEEEeCCCCCC
Q 013274          384 WSGKT--------------CLTFRGHYEYVNCCCFSSQ--DQELYTGGNDRQILVWCPSRHI  429 (446)
Q Consensus       384 ~~~~~--------------~~~l~gH~~~v~~~~fSpd--~~~lvtgs~D~~v~vW~~~~~~  429 (446)
                      .+++.              +..+.+|...|++++|+|+  +++|++|+.|+.|++|++....
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~  320 (366)
T 3k26_A          259 GKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED  320 (366)
T ss_dssp             SSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSS
T ss_pred             CCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCC
Confidence            87644              7789999999999999999  9999999999999999998754

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.97  E-value=3.6e-30  Score=248.08  Aligned_cols=245  Identities=10%  Similarity=0.045  Sum_probs=184.6

Q ss_pred             ccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCC--eeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCC
Q 013274          102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT--RVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA  178 (446)
Q Consensus       102 h~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~  178 (446)
                      |...|.++.++| ++++|++|+.|++|++||+.++  +.+..+. +.+.+.++++++.   ..+|++++.|+.|++||++
T Consensus        10 ~~~~v~~~~~s~-~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~---~~~l~s~s~d~~v~vwd~~   85 (377)
T 3dwl_C           10 LPKPSYEHAFNS-QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPK---SNRIVTCSQDRNAYVYEKR   85 (377)
T ss_dssp             CSSCCSCCEECS-SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTT---TCCEEEEETTSSEEEC---
T ss_pred             CCCcEEEEEECC-CCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCC---CCEEEEEeCCCeEEEEEcC
Confidence            556788999987 8889999999999999999987  5555554 3456888888875   3579999999999999999


Q ss_pred             CCc---eeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeecccccc
Q 013274          179 SGA---ISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSA  255 (446)
Q Consensus       179 ~~~---~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (446)
                      ++.   ....+.+|...|.+++|+|+++. |++++.|+.|++||++.+......                          
T Consensus        86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~--------------------------  138 (377)
T 3dwl_C           86 PDGTWKQTLVLLRLNRAATFVRWSPNEDK-FAVGSGARVISVCYFEQENDWWVS--------------------------  138 (377)
T ss_dssp             ---CCCCEEECCCCSSCEEEEECCTTSSC-CEEEESSSCEEECCC-----CCCC--------------------------
T ss_pred             CCCceeeeeEecccCCceEEEEECCCCCE-EEEEecCCeEEEEEECCcccceee--------------------------
Confidence            887   66778899999999999999885 789999999999998764310000                          


Q ss_pred             CCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccc-cccCeEEEEEccCCCEEEEeecCCcEE
Q 013274          256 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATA-HYGAVTGLKVTEDGMYLLSAGSDSRIR  334 (446)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~fs~dg~~l~sgs~D~~i~  334 (446)
                                                                     ....+ |.+.|.+++|+|++++|++|+.|++|+
T Consensus       139 -----------------------------------------------~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~  171 (377)
T 3dwl_C          139 -----------------------------------------------KHLKRPLRSTILSLDWHPNNVLLAAGCADRKAY  171 (377)
T ss_dssp             -----------------------------------------------EEECSSCCSCEEEEEECTTSSEEEEEESSSCEE
T ss_pred             -----------------------------------------------eEeecccCCCeEEEEEcCCCCEEEEEeCCCEEE
Confidence                                                           00122 778899999999999999999999999


Q ss_pred             EEecCcCce--------------eeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCce----EEEeccc
Q 013274          335 LWDVESGRN--------------TLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKT----CLTFRGH  395 (446)
Q Consensus       335 lWd~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~----~~~l~gH  395 (446)
                      +||+.....              .......+ .+......++++|++..+++++. ..+++||+.+++.    +..+.+|
T Consensus       172 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  250 (377)
T 3dwl_C          172 VLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLS  250 (377)
T ss_dssp             EEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECS
T ss_pred             EEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCC
Confidence            999864220              00011111 22344567889999988777654 5899999999987    7899999


Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274          396 YEYVNCCCFSSQDQELYTGGNDRQILVWCPS  426 (446)
Q Consensus       396 ~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~  426 (446)
                      ...|++++|+||+++|++|+.|+.+ +|+..
T Consensus       251 ~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          251 QLPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             SSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             CCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence            9999999999999999999877777 55443

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.7e-29  Score=240.60  Aligned_cols=265  Identities=8%  Similarity=0.071  Sum_probs=190.6

Q ss_pred             CCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECC
Q 013274           55 EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTN  134 (446)
Q Consensus        55 ~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~  134 (446)
                      ++.+|+||+.||+|++||++++....            ...       ...|.++.++|.    ++|++.|++|++|+..
T Consensus        47 d~~~l~sg~~Dg~v~iwd~~~~~~~~------------~~~-------~~~v~~~~~~~~----~~s~s~D~~i~~w~~~  103 (343)
T 3lrv_A           47 DKWVCMCRCEDGALHFTQLKDSKTIT------------TIT-------TPNPRTGGEHPA----IISRGPCNRLLLLYPG  103 (343)
T ss_dssp             EEEEEEEEEETTEEEEEEESSSSCEE------------EEE-------EECCCTTCCCCS----EEEECSTTEEEEEETT
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEEE------------EEe-------cCCceeeeeCCc----eEEecCCCeEEEEEcc
Confidence            56799999999999999998764310            000       233444555552    9999999999999765


Q ss_pred             ---------CCeeeEEEec--CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeee-CCCCCeEEEEEecCC
Q 013274          135 ---------CTRVVMNFKM--PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS-GHRDGIMTVEWSTSS  202 (446)
Q Consensus       135 ---------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~-~h~~~v~sv~~s~~~  202 (446)
                               +++.+..+..  .+.+.++++++.. +..++++++.|+.|++||+++++....+. .|...+.+++|+|++
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg  182 (343)
T 3lrv_A          104 NQITILDSKTNKVLREIEVDSANEIIYMYGHNEV-NTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDS  182 (343)
T ss_dssp             TEEEEEETTTCCEEEEEECCCSSCEEEEECCC----CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTS
T ss_pred             CceEEeecCCcceeEEeecCCCCCEEEEEcCCCC-CCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCC
Confidence                     4444444443  2557888887721 23589999999999999999998876664 456689999999998


Q ss_pred             CeEEEEeeCCCcEEEEEccCCcee-EEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeeccc
Q 013274          203 EWILVTGGCDGAIRFWDIRRAGCF-RVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV  281 (446)
Q Consensus       203 ~~~l~S~s~Dg~I~iWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (446)
                      .. |++|+.||.|++||++++.+. ..                                                     
T Consensus       183 ~~-lasg~~dg~i~iwd~~~~~~~~~~-----------------------------------------------------  208 (343)
T 3lrv_A          183 LL-LALYSPDGILDVYNLSSPDQASSR-----------------------------------------------------  208 (343)
T ss_dssp             CE-EEEECTTSCEEEEESSCTTSCCEE-----------------------------------------------------
T ss_pred             CE-EEEEcCCCEEEEEECCCCCCCccE-----------------------------------------------------
Confidence            74 799999999999999865321 10                                                     


Q ss_pred             ceeecCCccccccCCCccccccccc-ccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCC--C
Q 013274          282 GRIPAKGSVRQRLHPGMLSSQDRAT-AHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK--P  358 (446)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~--~  358 (446)
                                             .. +|.++|++|+|+|+|.+|++++ |++|++||+.+.+... .+.........  .
T Consensus       209 -----------------------~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~  263 (343)
T 3lrv_A          209 -----------------------FPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTL-AYPTYTIPEFKTGT  263 (343)
T ss_dssp             -----------------------CCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCB-SSCCCBC-----CC
T ss_pred             -----------------------EeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcce-eecccccccccccc
Confidence                                   12 3778899999999999999999 5599999999865321 11110000011  1


Q ss_pred             eEEEEcCCCcEEEEeC--CCceEEEEeecCceEEEecccccceEEEEEcC---CCCEEEEeeCCCcEEEeCCC
Q 013274          359 IQLATTQDPAVVFVPC--MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS---QDQELYTGGNDRQILVWCPS  426 (446)
Q Consensus       359 ~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSp---d~~~lvtgs~D~~v~vW~~~  426 (446)
                      ..++++|++.++++++  ...+++|++.+....-..    .++.+++|+|   +.+.|++++.|+.++++-..
T Consensus       264 ~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~  332 (343)
T 3lrv_A          264 VTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKT  332 (343)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred             eEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEec
Confidence            3588999999888843  678999999665432222    5678899999   99999999999999998543

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.97  E-value=3.8e-29  Score=238.36  Aligned_cols=251  Identities=13%  Similarity=0.234  Sum_probs=193.8

Q ss_pred             cCccccEeEEEEeecCCcEEEEEeC---CCeEEEEECCCCeeeE--EEecCCceEEeeeccCCCCceEEEEeeCCCcEEE
Q 013274          100 HGHKYAISSAIWYPVDTGLFVTGSY---DHYVKVWDTNCTRVVM--NFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRL  174 (446)
Q Consensus       100 ~gh~~~V~~~~~~~~~~~~l~s~s~---D~~i~iWd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~v  174 (446)
                      .+|...|.++.|+|....++++++.   |++|++||+.+++...  .+.+.+.+.++++++...+..+|++|+.|+.|++
T Consensus        15 ~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i   94 (357)
T 3i2n_A           15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHI   94 (357)
T ss_dssp             EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEE
T ss_pred             cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEE
Confidence            5799999999999854456677776   9999999999887643  3456677899999986433568999999999999


Q ss_pred             EeCCCCc-eeeeeeCCCCCeEEEEE------ecCCCeEEEEeeCCCcEEEEEccCCc-eeEEeecccccccCCCcccccc
Q 013274          175 CDIASGA-ISQTLSGHRDGIMTVEW------STSSEWILVTGGCDGAIRFWDIRRAG-CFRVLDQSQSQLGRRPPLLKRK  246 (446)
Q Consensus       175 wd~~~~~-~~~~l~~h~~~v~sv~~------s~~~~~~l~S~s~Dg~I~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~  246 (446)
                      ||++++. ....+.+|.+.|.++.|      +|+++. |++++.||.|++||++++. ....+....             
T Consensus        95 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~-------------  160 (357)
T 3i2n_A           95 WNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPE-IVTGSRDGTVKVWDPRQKDDPVANMEPVQ-------------  160 (357)
T ss_dssp             ECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCE-EEEEETTSCEEEECTTSCSSCSEEECCCT-------------
T ss_pred             EeCCCCCccEEEEEecccceEEEeeccccccCCCccE-EEEEeCCCeEEEEeCCCCCCcceeccccC-------------
Confidence            9999988 88899999999999965      567774 7899999999999998653 221111000             


Q ss_pred             eeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEE----EccCCC
Q 013274          247 VSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLK----VTEDGM  322 (446)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~----fs~dg~  322 (446)
                                                                                 ..+...+.+++    |+|++.
T Consensus       161 -----------------------------------------------------------~~~~~~v~~~~~~~~~~~~~~  181 (357)
T 3i2n_A          161 -----------------------------------------------------------GENKRDCWTVAFGNAYNQEER  181 (357)
T ss_dssp             -----------------------------------------------------------TSCCCCEEEEEEECCCC-CCC
T ss_pred             -----------------------------------------------------------CCCCCceEEEEEEeccCCCCC
Confidence                                                                       01123577777    789999


Q ss_pred             EEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcC---CCcEEEEeC-CCceEEEEeecCceEEEec-----
Q 013274          323 YLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQ---DPAVVFVPC-MTAVKAFDIWSGKTCLTFR-----  393 (446)
Q Consensus       323 ~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~d~~~~~~~~~l~-----  393 (446)
                      +|++++.|+.|++||+.+++...     ..........++++|   ++..+++++ ...+++||+.+++....+.     
T Consensus       182 ~l~~~~~d~~i~i~d~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  256 (357)
T 3i2n_A          182 VVCAGYDNGDIKLFDLRNMALRW-----ETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEK  256 (357)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEE-----EEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEE
T ss_pred             EEEEEccCCeEEEEECccCceee-----ecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccC
Confidence            99999999999999999875311     112234556788888   777777765 4689999998876655444     


Q ss_pred             ccccceEEEEEcCCCC-EEEEeeCCCcEEEeCCCCC
Q 013274          394 GHYEYVNCCCFSSQDQ-ELYTGGNDRQILVWCPSRH  428 (446)
Q Consensus       394 gH~~~v~~~~fSpd~~-~lvtgs~D~~v~vW~~~~~  428 (446)
                      +|...|++++|+|+++ +|++|+.|+.|++|++...
T Consensus       257 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  292 (357)
T 3i2n_A          257 AHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYP  292 (357)
T ss_dssp             CCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECC
T ss_pred             CCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCC
Confidence            9999999999999999 8999999999999998744

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.97  E-value=2.2e-29  Score=246.01  Aligned_cols=241  Identities=16%  Similarity=0.198  Sum_probs=187.5

Q ss_pred             EeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeee
Q 013274          106 ISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT  185 (446)
Q Consensus       106 V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~  185 (446)
                      ++++.++| ++++|++++.|++|++||+.+++....+..........+.+   +..+|++|+.|+.|++||++++.....
T Consensus        59 ~~~~~~s~-~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~  134 (420)
T 3vl1_A           59 GKGNTFEK-VGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKL---QMRRFILGTTEGDIKVLDSNFNLQREI  134 (420)
T ss_dssp             CTTCEEEE-EETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECS---SSCEEEEEETTSCEEEECTTSCEEEEE
T ss_pred             ccceeeee-cCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEec---CCCEEEEEECCCCEEEEeCCCcceeee
Confidence            33556776 78899999999999999998776654444332232233444   446899999999999999999998888


Q ss_pred             eeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCC
Q 013274          186 LSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRA  265 (446)
Q Consensus       186 l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (446)
                      +.+|.+.|.+++|+|+++. |++++.|++|++||++++++...                                     
T Consensus       135 ~~~h~~~v~~~~~~~~~~~-l~s~s~d~~i~iwd~~~~~~~~~-------------------------------------  176 (420)
T 3vl1_A          135 DQAHVSEITKLKFFPSGEA-LISSSQDMQLKIWSVKDGSNPRT-------------------------------------  176 (420)
T ss_dssp             TTSSSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTCCCCEE-------------------------------------
T ss_pred             cccccCccEEEEECCCCCE-EEEEeCCCeEEEEeCCCCcCceE-------------------------------------
Confidence            8999999999999999884 78999999999999986543221                                     


Q ss_pred             ccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceee
Q 013274          266 PQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTL  345 (446)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~  345 (446)
                                                             ..+|.+.|.+++|+|++.+|++++.|++|++||+.+++...
T Consensus       177 ---------------------------------------~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~  217 (420)
T 3vl1_A          177 ---------------------------------------LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIH  217 (420)
T ss_dssp             ---------------------------------------EECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred             ---------------------------------------EcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeE
Confidence                                                   13577889999999999999999999999999999875321


Q ss_pred             eeeeEEEee---------------------cCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEe-cccccceEEE
Q 013274          346 VNFETVRLQ---------------------TSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTF-RGHYEYVNCC  402 (446)
Q Consensus       346 ~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l-~gH~~~v~~~  402 (446)
                      . +......                     ......+++++++..+++++. ..+++||+.+++....+ .+|...|+++
T Consensus       218 ~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~  296 (420)
T 3vl1_A          218 T-FNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSL  296 (420)
T ss_dssp             E-ECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEE
T ss_pred             E-eecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeE
Confidence            1 1100000                     112223455678878777654 57999999998877665 4689999999


Q ss_pred             EEcCCCC-EEEEeeCCCcEEEeCCCCC
Q 013274          403 CFSSQDQ-ELYTGGNDRQILVWCPSRH  428 (446)
Q Consensus       403 ~fSpd~~-~lvtgs~D~~v~vW~~~~~  428 (446)
                      +|+|+++ +|++|+.|+.|++|++...
T Consensus       297 ~~~~~~~~~l~~g~~dg~i~vwd~~~~  323 (420)
T 3vl1_A          297 TVDGNNANYIYAGYENGMLAQWDLRSP  323 (420)
T ss_dssp             EECSSCTTEEEEEETTSEEEEEETTCT
T ss_pred             EEeCCCCCEEEEEeCCCeEEEEEcCCC
Confidence            9999999 9999999999999999765

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.97  E-value=5.5e-28  Score=235.27  Aligned_cols=250  Identities=18%  Similarity=0.300  Sum_probs=194.9

Q ss_pred             CCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEE
Q 013274           40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF  119 (446)
Q Consensus        40 ~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l  119 (446)
                      .+|.+.|++++|+| ++++|++|+.||.|++||++++...                 ....+|...|.++.+   ++.+|
T Consensus       131 ~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~-----------------~~~~~~~~~v~~~~~---~~~~l  189 (401)
T 4aez_A          131 TDESTYVASVKWSH-DGSFLSVGLGNGLVDIYDVESQTKL-----------------RTMAGHQARVGCLSW---NRHVL  189 (401)
T ss_dssp             CCTTCCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEE-----------------EEECCCSSCEEEEEE---ETTEE
T ss_pred             cCCCCCEEEEEECC-CCCEEEEECCCCeEEEEECcCCeEE-----------------EEecCCCCceEEEEE---CCCEE
Confidence            35899999999997 6789999999999999999765321                 122479999999888   35799


Q ss_pred             EEEeCCCeEEEEECCC-CeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEE
Q 013274          120 VTGSYDHYVKVWDTNC-TRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVE  197 (446)
Q Consensus       120 ~s~s~D~~i~iWd~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~  197 (446)
                      ++++.|++|++||+.. ...+..+. +.+.+..+.+++.   ..+|++|+.|+.|++||++++.....+.+|...|.+++
T Consensus       190 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~  266 (401)
T 4aez_A          190 SSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSD---GLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVA  266 (401)
T ss_dssp             EEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT---SSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEE
T ss_pred             EEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCC---CCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEE
Confidence            9999999999999984 44444444 4567888888874   45899999999999999999999999999999999999


Q ss_pred             EecCCCeEEEEee--CCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCc
Q 013274          198 WSTSSEWILVTGG--CDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNG  275 (446)
Q Consensus       198 ~s~~~~~~l~S~s--~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (446)
                      |+|++..++++++  .|+.|++||++++.++..+                                              
T Consensus       267 ~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~----------------------------------------------  300 (401)
T 4aez_A          267 WCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV----------------------------------------------  300 (401)
T ss_dssp             ECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE----------------------------------------------
T ss_pred             ECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE----------------------------------------------
Confidence            9998887788866  7999999999876543322                                              


Q ss_pred             eeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEE--eecCCcEEEEecCcCceeeeeeeEEEe
Q 013274          276 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLS--AGSDSRIRLWDVESGRNTLVNFETVRL  353 (446)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s--gs~D~~i~lWd~~~~~~~~~~~~~~~~  353 (446)
                                                     .|...|.+++|+|+|.+|++  |+.|+.|++||+.++....  ...+..
T Consensus       301 -------------------------------~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~--~~~~~~  347 (401)
T 4aez_A          301 -------------------------------DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTK--QVDIPA  347 (401)
T ss_dssp             -------------------------------ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEE--EEEEEC
T ss_pred             -------------------------------eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcccee--EEEecC
Confidence                                           12345899999999999998  5589999999998754321  112233


Q ss_pred             ecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEe
Q 013274          354 QTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTF  392 (446)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l  392 (446)
                      +......+++++++..+++++. ..+++|++.+++.+...
T Consensus       348 h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~  387 (401)
T 4aez_A          348 HDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP  387 (401)
T ss_dssp             CSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred             CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence            4456777899999998888765 57999999988876544

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.97  E-value=1.8e-28  Score=236.81  Aligned_cols=253  Identities=12%  Similarity=0.102  Sum_probs=196.9

Q ss_pred             ccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEe---cCCceEEeeeccCCCCceEEEEeeCCCcEEEE
Q 013274           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK---MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLC  175 (446)
Q Consensus        99 ~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vw  175 (446)
                      ..+|...|.++.|+|....+|++|+.|++|++||+.+++....+.   +.+.+.++++++.  +..+|++++.|+.|++|
T Consensus        69 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~l~s~~~d~~i~iw  146 (383)
T 3ei3_B           69 ASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQF--NTNQLFVSSIRGATTLR  146 (383)
T ss_dssp             ECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETT--EEEEEEEEETTTEEEEE
T ss_pred             ccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCC--CCCEEEEEeCCCEEEEE
Confidence            358999999999998433899999999999999999888776665   4566888888873  34689999999999999


Q ss_pred             eCCCCceeeeeeC---CCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccc
Q 013274          176 DIASGAISQTLSG---HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKS  252 (446)
Q Consensus       176 d~~~~~~~~~l~~---h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (446)
                      |+++ .....+..   |...|.+++|+|+++. |++++.|+.|++||++ +.++..                        
T Consensus       147 d~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~~-~~~~~~------------------------  199 (383)
T 3ei3_B          147 DFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQM-LATGDSTGRLLLLGLD-GHEIFK------------------------  199 (383)
T ss_dssp             ETTS-CEEEEEECCCCSSCCEEEEEEETTTTE-EEEEETTSEEEEEETT-SCEEEE------------------------
T ss_pred             ECCC-CceEEEeccCCCCCCeEEEEECCCCCE-EEEECCCCCEEEEECC-CCEEEE------------------------
Confidence            9986 44455544   4588999999999885 7899999999999984 222111                        


Q ss_pred             cccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCC-EEEEeecCC
Q 013274          253 LSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM-YLLSAGSDS  331 (446)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~sgs~D~  331 (446)
                                                                          ..+|.+.|.+++|+|++. +|++|+.|+
T Consensus       200 ----------------------------------------------------~~~h~~~v~~~~~~~~~~~~l~s~~~d~  227 (383)
T 3ei3_B          200 ----------------------------------------------------EKLHKAKVTHAEFNPRCDWLMATSSVDA  227 (383)
T ss_dssp             ----------------------------------------------------EECSSSCEEEEEECSSCTTEEEEEETTS
T ss_pred             ----------------------------------------------------eccCCCcEEEEEECCCCCCEEEEEeCCC
Confidence                                                                135677899999999999 999999999


Q ss_pred             cEEEEecCcCceeeeeeeEEEeecCCCeEEEEcC-CCcEEEEeCC-CceEEEEeecCceEEEecccc-------------
Q 013274          332 RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQ-DPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHY-------------  396 (446)
Q Consensus       332 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~-------------  396 (446)
                      +|++||+.+.+......... .+......+++++ ++..+++++. ..+++||+.+++....+.+|.             
T Consensus       228 ~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (383)
T 3ei3_B          228 TVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKAT  306 (383)
T ss_dssp             EEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCE
T ss_pred             EEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEe
Confidence            99999999743211111112 2345566788999 8888877654 689999999988877777764             


Q ss_pred             ----cceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCCCCCcCC
Q 013274          397 ----EYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVDA  435 (446)
Q Consensus       397 ----~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~~~~~~~  435 (446)
                          +.+..++|+||+++  +|+.|++|+||++.+........
T Consensus       307 ~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~  347 (383)
T 3ei3_B          307 WHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLR  347 (383)
T ss_dssp             ECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEEC
T ss_pred             ccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeec
Confidence                45566888999888  99999999999998765443333

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.5e-29  Score=247.31  Aligned_cols=254  Identities=15%  Similarity=0.232  Sum_probs=190.5

Q ss_pred             cCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCC---Ce---eeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEE
Q 013274          100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNC---TR---VVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVR  173 (446)
Q Consensus       100 ~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~  173 (446)
                      .+|...|+++.++|.++.+|+||+.|++|++||+.+   +.   ....+.+.+.+.++++++.   ..+|++|+.|+.|+
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~s~s~dg~i~  136 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPN---FDAFAVSSKDGQII  136 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTT---SSEEEEEETTSEEE
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCC---CCEEEEEeCCCEEE
Confidence            579999999999875788999999999999999866   32   3455567778999999874   45899999999999


Q ss_pred             EEeCC---CCceeeeeeC------------CCCCeEEEE--EecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccc
Q 013274          174 LCDIA---SGAISQTLSG------------HRDGIMTVE--WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQL  236 (446)
Q Consensus       174 vwd~~---~~~~~~~l~~------------h~~~v~sv~--~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~  236 (446)
                      +||++   ++.....+.+            +...+.++.  ++++++ +|++++.|+.|++||++++.++..+.      
T Consensus       137 vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~------  209 (437)
T 3gre_A          137 VLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS-LLVALTNLSRVIIFDIRTLERLQIIE------  209 (437)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE-EEEEEETTSEEEEEETTTCCEEEEEE------
T ss_pred             EEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCeeeEEEc------
Confidence            99995   5555444332            445566666  445665 57999999999999998765543331      


Q ss_pred             cCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEE
Q 013274          237 GRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLK  316 (446)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  316 (446)
                                                                                          ...|.+.|++++
T Consensus       210 --------------------------------------------------------------------~~~h~~~v~~~~  221 (437)
T 3gre_A          210 --------------------------------------------------------------------NSPRHGAVSSIC  221 (437)
T ss_dssp             --------------------------------------------------------------------CCGGGCCEEEEE
T ss_pred             --------------------------------------------------------------------cCCCCCceEEEE
Confidence                                                                                012677899999


Q ss_pred             EccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEee-cCCCeEEEE----cCCCcEEEEeCC-CceEEEEeecCceEE
Q 013274          317 VTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQ-TSKPIQLAT----TQDPAVVFVPCM-TAVKAFDIWSGKTCL  390 (446)
Q Consensus       317 fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~-~~~~~~d~~~~~~~~  390 (446)
                      |+|++.+|++|+.|++|++||+.+++...    ..... ......+++    ++++..+++++. ..+++||+.+++...
T Consensus       222 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~  297 (437)
T 3gre_A          222 IDEECCVLILGTTRGIIDIWDIRFNVLIR----SWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQY  297 (437)
T ss_dssp             ECTTSCEEEEEETTSCEEEEETTTTEEEE----EEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEE
T ss_pred             ECCCCCEEEEEcCCCeEEEEEcCCccEEE----EEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEE
Confidence            99999999999999999999999864321    11111 112334433    345657777765 469999999888777


Q ss_pred             Eecc--------------------------cccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCCCCCcCCC
Q 013274          391 TFRG--------------------------HYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVDAG  436 (446)
Q Consensus       391 ~l~g--------------------------H~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~~~~~~~~  436 (446)
                      .+.+                          |...|++++|+ ++++|+||+.|+.|++|++..........+
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~  368 (437)
T 3gre_A          298 AFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVIS  368 (437)
T ss_dssp             EEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEEC
T ss_pred             EEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEec
Confidence            6654                          56678899999 779999999999999999987765544444

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=1.7e-27  Score=230.45  Aligned_cols=268  Identities=14%  Similarity=0.137  Sum_probs=209.4

Q ss_pred             CEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEE-EEEeCCCeEEEEECCC
Q 013274           57 RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF-VTGSYDHYVKVWDTNC  135 (446)
Q Consensus        57 ~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l-~s~s~D~~i~iWd~~~  135 (446)
                      .++++++.|++|++||+++++..            .     ...+|. .+.++.++| +++++ ++++.|++|++||+.+
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~------------~-----~~~~~~-~~~~~~~s~-dg~~l~~~~~~d~~i~v~d~~~   63 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVT------------A-----TIPVGS-NPMGAVISP-DGTKVYVANAHSNDVSIIDTAT   63 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEE------------E-----EEECSS-SEEEEEECT-TSSEEEEEEGGGTEEEEEETTT
T ss_pred             EEEEEcCCCCEEEEEECCCCeEE------------E-----EeecCC-CcceEEECC-CCCEEEEECCCCCeEEEEECCC
Confidence            57899999999999999865421            0     112343 477888887 66654 7888999999999999


Q ss_pred             CeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcE
Q 013274          136 TRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAI  215 (446)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I  215 (446)
                      ++.+..+.....+..+++++..  ..++++++.++.|++||+++++....+..| ..+.+++|+|+++.++++++.|+.|
T Consensus        64 ~~~~~~~~~~~~v~~~~~spdg--~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v  140 (391)
T 1l0q_A           64 NNVIATVPAGSSPQGVAVSPDG--KQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTV  140 (391)
T ss_dssp             TEEEEEEECSSSEEEEEECTTS--SEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEE
T ss_pred             CeEEEEEECCCCccceEECCCC--CEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEE
Confidence            9999888887788889998854  245567777899999999999888877755 4689999999998776899999999


Q ss_pred             EEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccC
Q 013274          216 RFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLH  295 (446)
Q Consensus       216 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (446)
                      ++||++++++...+.                                                                 
T Consensus       141 ~~~d~~~~~~~~~~~-----------------------------------------------------------------  155 (391)
T 1l0q_A          141 SVINTVTKAVINTVS-----------------------------------------------------------------  155 (391)
T ss_dssp             EEEETTTTEEEEEEE-----------------------------------------------------------------
T ss_pred             EEEECCCCcEEEEEe-----------------------------------------------------------------
Confidence            999998765433221                                                                 


Q ss_pred             CCcccccccccccccCeEEEEEccCCCEE-EEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeC
Q 013274          296 PGMLSSQDRATAHYGAVTGLKVTEDGMYL-LSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC  374 (446)
Q Consensus       296 ~~~~~~~~~~~~h~~~v~~l~fs~dg~~l-~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (446)
                                 . ...+.+++|+|+|++| ++++.|++|++||+.+++...    ... ....+..+++++++..+++++
T Consensus       156 -----------~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~----~~~-~~~~~~~~~~~~~g~~l~~~~  218 (391)
T 1l0q_A          156 -----------V-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVID----TVK-VEAAPSGIAVNPEGTKAYVTN  218 (391)
T ss_dssp             -----------C-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE----EEE-CSSEEEEEEECTTSSEEEEEE
T ss_pred             -----------c-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEE----EEe-cCCCccceEECCCCCEEEEEe
Confidence                       1 1236789999999887 688889999999998864321    111 123445678899988877764


Q ss_pred             ----CCceEEEEeecCceEEEecccccceEEEEEcCCCCEE-EEeeCCCcEEEeCCCCCC
Q 013274          375 ----MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQEL-YTGGNDRQILVWCPSRHI  429 (446)
Q Consensus       375 ----~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~l-vtgs~D~~v~vW~~~~~~  429 (446)
                          ...+++||+.+++....+..|.. +.+++|+||+++| ++++.|+.|++|++.+..
T Consensus       219 ~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~  277 (391)
T 1l0q_A          219 VDKYFNTVSMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFXNTVSVIDTATNT  277 (391)
T ss_dssp             ECSSCCEEEEEETTTTEEEEEEECCSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             cCcCCCcEEEEECCCCeEEEEEecCCC-ccEEEEccCCCEEEEEcCCCCEEEEEECCCCc
Confidence                46899999999998888888764 7999999999987 688999999999998543

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.97  E-value=3.3e-28  Score=233.38  Aligned_cols=245  Identities=13%  Similarity=0.110  Sum_probs=197.4

Q ss_pred             CccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCe--eeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeC
Q 013274          101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR--VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI  177 (446)
Q Consensus       101 gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~  177 (446)
                      .|...|.++.++| ++++|++++.|++|++||+.+++  .+..+. +.+.+..+++++.   ..+|++++.|+.|++||+
T Consensus         6 ~~~~~i~~~~~s~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~~~~~dg~i~vwd~   81 (372)
T 1k8k_C            6 FLVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD---SNRIVTCGTDRNAYVWTL   81 (372)
T ss_dssp             SCSSCCCEEEECT-TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETT---TTEEEEEETTSCEEEEEE
T ss_pred             ccCCCeEEEEECC-CCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCC---CCEEEEEcCCCeEEEEEC
Confidence            4788899999987 78899999999999999999886  666665 4566888888874   458899999999999999


Q ss_pred             CCCceee--eeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeecccccc
Q 013274          178 ASGAISQ--TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSA  255 (446)
Q Consensus       178 ~~~~~~~--~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (446)
                      +++....  .+.+|...|.++.|+|+++. |++++.|+.|++||++.........                         
T Consensus        82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~v~i~d~~~~~~~~~~~-------------------------  135 (372)
T 1k8k_C           82 KGRTWKPTLVILRINRAARCVRWAPNEKK-FAVGSGSRVISICYFEQENDWWVCK-------------------------  135 (372)
T ss_dssp             ETTEEEEEEECCCCSSCEEEEEECTTSSE-EEEEETTSSEEEEEEETTTTEEEEE-------------------------
T ss_pred             CCCeeeeeEEeecCCCceeEEEECCCCCE-EEEEeCCCEEEEEEecCCCcceeee-------------------------
Confidence            9886543  44789999999999999875 7899999999999987643111100                         


Q ss_pred             CCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEE
Q 013274          256 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRL  335 (446)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~l  335 (446)
                                                                     ....+|...|.+++|+|++.+|++|+.|+.|++
T Consensus       136 -----------------------------------------------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~  168 (372)
T 1k8k_C          136 -----------------------------------------------HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRI  168 (372)
T ss_dssp             -----------------------------------------------EECTTCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             -----------------------------------------------eeecccCCCeeEEEEcCCCCEEEEEcCCCCEEE
Confidence                                                           001246778999999999999999999999999


Q ss_pred             EecCc------------------CceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccc
Q 013274          336 WDVES------------------GRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHY  396 (446)
Q Consensus       336 Wd~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~  396 (446)
                      ||+..                  ++.    ...+..+......+++++++..+++++. ..+++||+.+++.+..+.+|.
T Consensus       169 ~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  244 (372)
T 1k8k_C          169 FSAYIKEVEERPAPTPWGSKMPFGEL----MFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET  244 (372)
T ss_dssp             EECCCTTTSCCCCCBTTBSCCCTTCE----EEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS
T ss_pred             EEcccccccccccccccccccchhhh----eEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCC
Confidence            99642                  211    1111122344567888999888877654 579999999999999999999


Q ss_pred             cceEEEEEcCCCCEEEEeeCCCcEEEeCCCC
Q 013274          397 EYVNCCCFSSQDQELYTGGNDRQILVWCPSR  427 (446)
Q Consensus       397 ~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~  427 (446)
                      ..|++++|+|++++|++| .|+.|++|++..
T Consensus       245 ~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          245 LPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             CCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             CCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            999999999999999888 899999999876

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.97  E-value=1.1e-29  Score=239.33  Aligned_cols=211  Identities=21%  Similarity=0.302  Sum_probs=159.1

Q ss_pred             ccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCee--eEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEE
Q 013274           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRV--VMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLC  175 (446)
Q Consensus        99 ~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vw  175 (446)
                      ..+|...|.++.|+| ++++|||||.|++|++||+.++..  +..+. +.+.+..+++++.. +..+|++|+.|+.|++|
T Consensus         9 ~~~H~~~V~~v~~s~-~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~-~~~~l~s~s~D~~v~iW   86 (316)
T 3bg1_A            9 DTSHEDMIHDAQMDY-YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPM-YGNILASCSYDRKVIIW   86 (316)
T ss_dssp             -----CCEEEEEECG-GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGG-GSSCEEEEETTSCEEEE
T ss_pred             cccccCeEEEeeEcC-CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCC-CCCEEEEEECCCEEEEE
Confidence            358999999999987 788999999999999999987753  34443 45668888887531 23579999999999999


Q ss_pred             eCCCCc--eeeeeeCCCCCeEEEEEecC--CCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeecc
Q 013274          176 DIASGA--ISQTLSGHRDGIMTVEWSTS--SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISK  251 (446)
Q Consensus       176 d~~~~~--~~~~l~~h~~~v~sv~~s~~--~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (446)
                      |++++.  ....+.+|.+.|.+++|+|+  +. +|++|+.|++|++||++.........                     
T Consensus        87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~-~lasgs~D~~i~lwd~~~~~~~~~~~---------------------  144 (316)
T 3bg1_A           87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGL-ILACGSSDGAISLLTYTGEGQWEVKK---------------------  144 (316)
T ss_dssp             CCSSSCCCEEEEECCCSSCCCEEEECCTTTCS-CEEEECSSSCEEEEEECSSSCEEECC---------------------
T ss_pred             ECCCCcceEEEEccCCCCceEEEEECCCCCCc-EEEEEcCCCCEEEEecCCCCCcceee---------------------
Confidence            999874  56678899999999999997  44 57999999999999987542111000                     


Q ss_pred             ccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccC-----------
Q 013274          252 SLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED-----------  320 (446)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~d-----------  320 (446)
                                                                          ...+|...|.+++|+|+           
T Consensus       145 ----------------------------------------------------~~~~h~~~v~~~~~~~~~~~~~~~~~~~  172 (316)
T 3bg1_A          145 ----------------------------------------------------INNAHTIGCNAVSWAPAVVPGSLIDHPS  172 (316)
T ss_dssp             ----------------------------------------------------BTTSSSSCBCCCEECCCCCC------CC
T ss_pred             ----------------------------------------------------eeccccCCcceEEEccccCCcccccccc
Confidence                                                                01234445555666655           


Q ss_pred             ------CCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecc
Q 013274          321 ------GMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRG  394 (446)
Q Consensus       321 ------g~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~g  394 (446)
                            +++|++|+.|++|++||+.....                                          .+...+|.+
T Consensus       173 ~~~~~~~~~l~sgs~D~~v~lWd~~~~~~------------------------------------------~~~~~~l~~  210 (316)
T 3bg1_A          173 GQKPNYIKRFASGGCDNLIKLWKEEEDGQ------------------------------------------WKEEQKLEA  210 (316)
T ss_dssp             SCCCCCCCBEECCBTTSBCCEEEECTTSC------------------------------------------EEEEECCBC
T ss_pred             ccCccccceEEEecCCCeEEEEEeCCCCc------------------------------------------cceeeeccc
Confidence                  57899999999999999864311                                          011235678


Q ss_pred             cccceEEEEEcCCC----CEEEEeeCCCcEEEeCCCC
Q 013274          395 HYEYVNCCCFSSQD----QELYTGGNDRQILVWCPSR  427 (446)
Q Consensus       395 H~~~v~~~~fSpd~----~~lvtgs~D~~v~vW~~~~  427 (446)
                      |.+.|.+++|+|++    ++|+|||.|++|+||+++.
T Consensus       211 h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          211 HSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             CSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred             CCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence            99999999999997    8899999999999998865

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=1.5e-27  Score=234.20  Aligned_cols=283  Identities=12%  Similarity=0.085  Sum_probs=217.8

Q ss_pred             cceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEe
Q 013274           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS  123 (446)
Q Consensus        44 ~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s  123 (446)
                      ..+.+++|+| ++.++++++.|++|++||++++...            .........+|...|.++.+.+ ++.++++++
T Consensus       123 ~~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~------------~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~  188 (433)
T 3bws_A          123 FQPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTV------------RLSPPEKYKKKLGFVETISIPE-HNELWVSQM  188 (433)
T ss_dssp             SCBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEE------------EECCCHHHHTTCCEEEEEEEGG-GTEEEEEEG
T ss_pred             CCceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEe------------eecCcccccccCCceeEEEEcC-CCEEEEEEC
Confidence            4567999998 7888999999999999999875421            0111112347888999988855 788999999


Q ss_pred             CCCeEEEEECCCCeeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCC
Q 013274          124 YDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSS  202 (446)
Q Consensus       124 ~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~  202 (446)
                      .|++|++||+++++.+..+.. ...+..+++++..  ..++++++.|+.|++||+++++....+..+ ..+.+++|+|++
T Consensus       189 ~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g  265 (433)
T 3bws_A          189 QANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIR--DLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDG  265 (433)
T ss_dssp             GGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTT--TEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTS
T ss_pred             CCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCC--CEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCC
Confidence            999999999999888877763 3457778888753  345567778999999999999888877764 458999999999


Q ss_pred             CeEEEEee--------CCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCC
Q 013274          203 EWILVTGG--------CDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGN  274 (446)
Q Consensus       203 ~~~l~S~s--------~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (446)
                      +.+ ++++        .|+.|++||+++++....+                                             
T Consensus       266 ~~l-~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~---------------------------------------------  299 (433)
T 3bws_A          266 KEL-YIAQFSASNQESGGGRLGIYSMDKEKLIDTI---------------------------------------------  299 (433)
T ss_dssp             SEE-EEEEEESCTTCSCCEEEEEEETTTTEEEEEE---------------------------------------------
T ss_pred             CEE-EEEECCCCccccCCCeEEEEECCCCcEEeec---------------------------------------------
Confidence            864 5555        5889999999865432211                                             


Q ss_pred             ceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCE-EEEeecCCcEEEEecCcCceeeeeeeEEEe
Q 013274          275 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMY-LLSAGSDSRIRLWDVESGRNTLVNFETVRL  353 (446)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~-l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~  353 (446)
                                                      .|.+.+.+++|+|+|++ +++++.|++|++||+.+++...    ... 
T Consensus       300 --------------------------------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~----~~~-  342 (433)
T 3bws_A          300 --------------------------------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQK----SIP-  342 (433)
T ss_dssp             --------------------------------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEE----EEE-
T ss_pred             --------------------------------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEE----Eec-
Confidence                                            23345788999999975 5777999999999998765321    111 


Q ss_pred             ecCCCeEEEEcCCCcEEEEeCCC----------------ceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeC-
Q 013274          354 QTSKPIQLATTQDPAVVFVPCMT----------------AVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGN-  416 (446)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~-  416 (446)
                      ....+..+++++++..+++++..                .+.+||+.+++....+.++ ..+.+++|+||+++|++++. 
T Consensus       343 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~  421 (433)
T 3bws_A          343 VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVISDFL  421 (433)
T ss_dssp             CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEEEETT
T ss_pred             CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEEEECC
Confidence            23445678899999877776542                7999999999988888874 57899999999999987765 


Q ss_pred             CCcEEEeCCCC
Q 013274          417 DRQILVWCPSR  427 (446)
Q Consensus       417 D~~v~vW~~~~  427 (446)
                      |++|++|+++.
T Consensus       422 d~~i~v~~~~~  432 (433)
T 3bws_A          422 DHQIRVYRRDG  432 (433)
T ss_dssp             TTEEEEEEETT
T ss_pred             CCeEEEEEecC
Confidence            99999998763

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=3.5e-28  Score=236.67  Aligned_cols=260  Identities=16%  Similarity=0.264  Sum_probs=198.1

Q ss_pred             EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (446)
Q Consensus        38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~  117 (446)
                      .+.+|.+.|++++|+|.++++|++|+.||+|+|||+.++.....     ....+     ....+|...|.++.|+|....
T Consensus        76 ~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~-----~~~~~-----~~~~~h~~~v~~~~~~p~~~~  145 (402)
T 2aq5_A           76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLP-----LREPV-----ITLEGHTKRVGIVAWHPTAQN  145 (402)
T ss_dssp             CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSC-----BCSCS-----EEEECCSSCEEEEEECSSBTT
T ss_pred             eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccc-----cCCce-----EEecCCCCeEEEEEECcCCCC
Confidence            35689999999999975688999999999999999987532110     00111     123589999999999984447


Q ss_pred             EEEEEeCCCeEEEEECCCCeeeEEEe---cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeee-eCCCCC-
Q 013274          118 LFVTGSYDHYVKVWDTNCTRVVMNFK---MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL-SGHRDG-  192 (446)
Q Consensus       118 ~l~s~s~D~~i~iWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l-~~h~~~-  192 (446)
                      +|++++.|++|++||+.+++.+..+.   +.+.+.++++++.   ..+|++++.|+.|++||+++++.+..+ .+|.+. 
T Consensus       146 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  222 (402)
T 2aq5_A          146 VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRD---GALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTR  222 (402)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTT---SSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSS
T ss_pred             EEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCC---CCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCc
Confidence            99999999999999999999888773   4566888898874   357899999999999999999998888 788876 


Q ss_pred             eEEEEEecCCCeEEEEe---eCCCcEEEEEccCCce-eEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccc
Q 013274          193 IMTVEWSTSSEWILVTG---GCDGAIRFWDIRRAGC-FRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQK  268 (446)
Q Consensus       193 v~sv~~s~~~~~~l~S~---s~Dg~I~iWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (446)
                      +.++.|+|+++ +|++|   +.|+.|++||+++... ....                                       
T Consensus       223 ~~~~~~~~~~~-~l~~g~~~~~d~~i~iwd~~~~~~~~~~~---------------------------------------  262 (402)
T 2aq5_A          223 PVHAVFVSEGK-ILTTGFSRMSERQVALWDTKHLEEPLSLQ---------------------------------------  262 (402)
T ss_dssp             CCEEEECSTTE-EEEEEECTTCCEEEEEEETTBCSSCSEEE---------------------------------------
T ss_pred             ceEEEEcCCCc-EEEEeccCCCCceEEEEcCccccCCceEE---------------------------------------
Confidence            89999999976 57788   7899999999976421 0000                                       


Q ss_pred             cccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEE-EeecCCcEEEEecCcCceeeee
Q 013274          269 RSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLL-SAGSDSRIRLWDVESGRNTLVN  347 (446)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~-sgs~D~~i~lWd~~~~~~~~~~  347 (446)
                                                          ...|...+.+++|+|+|.+|+ +|+.|+.|++||+.+++.....
T Consensus       263 ------------------------------------~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~  306 (402)
T 2aq5_A          263 ------------------------------------ELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHY  306 (402)
T ss_dssp             ------------------------------------ECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEE
T ss_pred             ------------------------------------eccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEe
Confidence                                                012445689999999999986 5667999999999987632222


Q ss_pred             eeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCce
Q 013274          348 FETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKT  388 (446)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  388 (446)
                      +.... .......++++|++..+++ ....+++|++.+++.
T Consensus       307 l~~~~-~~~~v~~~~~sp~~~~~~s-~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          307 LSMFS-SKESQRGMGYMPKRGLEVN-KCEIARFYKLHERKC  345 (402)
T ss_dssp             EEEEC-CSSCCSEEEECCGGGSCGG-GTEEEEEEEEETTEE
T ss_pred             ecccc-cCCcccceEEeccccccee-cceeEEEEEcCCCcE
Confidence            22221 2345667888888776654 344789999987654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=1.7e-28  Score=232.82  Aligned_cols=252  Identities=17%  Similarity=0.155  Sum_probs=195.1

Q ss_pred             cCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCe----eeEEEecCCceEEeeeccCCCCce-EEEEeeCCCcEEE
Q 013274          100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR----VVMNFKMPGKVYRTAMSPLAASHM-LIAAGTEDVQVRL  174 (446)
Q Consensus       100 ~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~lasgs~d~~v~v  174 (446)
                      .+|...|.++.|+| ++.+|++++.|++|++||+.++.    ......+.+.+.++++++.   .. +|++|+.|+.|++
T Consensus         8 ~~h~~~v~~~~~s~-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~dg~i~~   83 (342)
T 1yfq_A            8 QAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN---TDLQIYVGTVQGEILK   83 (342)
T ss_dssp             SCCSSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES---SSEEEEEEETTSCEEE
T ss_pred             cCCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCC---CCcEEEEEcCCCeEEE
Confidence            48999999999987 78899999999999999998877    5555566677888888874   46 7899999999999


Q ss_pred             EeC-CCCceeeeeeC--CCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeecc
Q 013274          175 CDI-ASGAISQTLSG--HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISK  251 (446)
Q Consensus       175 wd~-~~~~~~~~l~~--h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (446)
                      ||+ +++.. ..+.+  |...|.+++|+| ++ .|++++.|+.|++||+++...-....                     
T Consensus        84 wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~~---------------------  139 (342)
T 1yfq_A           84 VDLIGSPSF-QALTNNEANLGICRICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVIAV---------------------  139 (342)
T ss_dssp             ECSSSSSSE-EECBSCCCCSCEEEEEEET-TT-EEEEEETTSEEEEECHHHHTTBCEEE---------------------
T ss_pred             EEeccCCce-EeccccCCCCceEEEEeCC-CC-EEEEEcCCCeEEEEcccccccccccc---------------------
Confidence            999 87754 67788  999999999999 66 47899999999999986410000000                     


Q ss_pred             ccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCC
Q 013274          252 SLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS  331 (446)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~  331 (446)
                                                         .+.           .. ....|.+.|.+++|+|++  |++++.|+
T Consensus       140 -----------------------------------~~~-----------~~-~~~~~~~~v~~~~~~~~~--l~~~~~d~  170 (342)
T 1yfq_A          140 -----------------------------------KNL-----------NS-NNTKVKNKIFTMDTNSSR--LIVGMNNS  170 (342)
T ss_dssp             -----------------------------------EES-----------CS-SSSSSCCCEEEEEECSSE--EEEEESTT
T ss_pred             -----------------------------------cCC-----------ee-eEEeeCCceEEEEecCCc--EEEEeCCC
Confidence                                               000           00 001256779999999988  88999999


Q ss_pred             cEEEEecCc-CceeeeeeeEEEeecCCCeEEEEcC-CCcEEEEeCC-CceEEEEeecC------ceEEEeccccc-----
Q 013274          332 RIRLWDVES-GRNTLVNFETVRLQTSKPIQLATTQ-DPAVVFVPCM-TAVKAFDIWSG------KTCLTFRGHYE-----  397 (446)
Q Consensus       332 ~i~lWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~d~~~~------~~~~~l~gH~~-----  397 (446)
                      .|++||+.+ +.......  ..........+++.+ ++..+++++. ..+++|++...      +....+.+|..     
T Consensus       171 ~i~i~d~~~~~~~~~~~~--~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (342)
T 1yfq_A          171 QVQWFRLPLCEDDNGTIE--ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDT  248 (342)
T ss_dssp             EEEEEESSCCTTCCCEEE--ECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCC
T ss_pred             eEEEEECCccccccceee--ecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccccccccc
Confidence            999999987 54321111  111223455678888 8877777654 58999999877      77788988866     


Q ss_pred             ----ceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCCC
Q 013274          398 ----YVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS  430 (446)
Q Consensus       398 ----~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~~  430 (446)
                          .|++++|+|++++|++|+.|+.|++|++.....
T Consensus       249 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~  285 (342)
T 1yfq_A          249 NLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK  285 (342)
T ss_dssp             SSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE
T ss_pred             ccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhH
Confidence                999999999999999999999999999986643

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.2e-27  Score=221.87  Aligned_cols=240  Identities=19%  Similarity=0.303  Sum_probs=192.0

Q ss_pred             ccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeC
Q 013274           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI  177 (446)
Q Consensus        99 ~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~  177 (446)
                      ..+|...|.++.+ + ++.+|++++.|++|++||+.++.....+. +.+.+.++++++.   ..++++++.|+.|++|++
T Consensus        14 l~~h~~~v~~~~~-~-~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~~~~~   88 (313)
T 3odt_A           14 LKGHDQDVRDVVA-V-DDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSE---KELLLFGGKDTMINGVPL   88 (313)
T ss_dssp             ECCCSSCEEEEEE-E-ETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETT---TTEEEEEETTSCEEEEET
T ss_pred             hhCCCCCcEEEEe-c-CCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCC---CCEEEEecCCCeEEEEEe
Confidence            4689999999988 5 67899999999999999998887766554 4566888888874   458999999999999998


Q ss_pred             CCC---ceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccc
Q 013274          178 ASG---AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLS  254 (446)
Q Consensus       178 ~~~---~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (446)
                      ...   .....+.+|...|.++.|+  ++ .+++++.||.|++||.  ......                          
T Consensus        89 ~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~l~~~~~d~~i~~~d~--~~~~~~--------------------------  137 (313)
T 3odt_A           89 FATSGEDPLYTLIGHQGNVCSLSFQ--DG-VVISGSWDKTAKVWKE--GSLVYN--------------------------  137 (313)
T ss_dssp             TCCTTSCC-CEECCCSSCEEEEEEE--TT-EEEEEETTSEEEEEET--TEEEEE--------------------------
T ss_pred             eecCCCCcccchhhcccCEEEEEec--CC-EEEEEeCCCCEEEEcC--CcEEEe--------------------------
Confidence            765   5577889999999999994  34 5789999999999992  221111                          


Q ss_pred             cCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEcc-CCCEEEEeecCCcE
Q 013274          255 AGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE-DGMYLLSAGSDSRI  333 (446)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~sgs~D~~i  333 (446)
                                                                        ...|..++.++.|+| ++.+|++++.|+.|
T Consensus       138 --------------------------------------------------~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i  167 (313)
T 3odt_A          138 --------------------------------------------------LQAHNASVWDAKVVSFSENKFLTASADKTI  167 (313)
T ss_dssp             --------------------------------------------------EECCSSCEEEEEEEETTTTEEEEEETTSCE
T ss_pred             --------------------------------------------------cccCCCceeEEEEccCCCCEEEEEECCCCE
Confidence                                                              124667799999988 99999999999999


Q ss_pred             EEEecCcCceeeeeeeEEEe-ecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEE
Q 013274          334 RLWDVESGRNTLVNFETVRL-QTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELY  412 (446)
Q Consensus       334 ~lWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lv  412 (446)
                      ++||.....      ..... .......+++.+++.++.......+++||+.+++.+..+.+|.+.|++++|+|++ .|+
T Consensus       168 ~i~d~~~~~------~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~  240 (313)
T 3odt_A          168 KLWQNDKVI------KTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIV  240 (313)
T ss_dssp             EEEETTEEE------EEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEE
T ss_pred             EEEecCceE------EEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEE
Confidence            999944321      11111 2334556788888885555566789999999999999999999999999999999 689


Q ss_pred             EeeCCCcEEEeCCCCCCCC
Q 013274          413 TGGNDRQILVWCPSRHISD  431 (446)
Q Consensus       413 tgs~D~~v~vW~~~~~~~~  431 (446)
                      +|+.|+.|++|++......
T Consensus       241 ~~~~dg~v~iwd~~~~~~~  259 (313)
T 3odt_A          241 SCGEDRTVRIWSKENGSLK  259 (313)
T ss_dssp             EEETTSEEEEECTTTCCEE
T ss_pred             EEecCCEEEEEECCCCcee
Confidence            9999999999999866533

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.96  E-value=1.8e-28  Score=241.31  Aligned_cols=268  Identities=14%  Similarity=0.086  Sum_probs=184.7

Q ss_pred             eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (446)
Q Consensus        39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~  118 (446)
                      +.+|.+.|++|+|+|.++.+|+|||.||+|+|||+++....             ..  .....+...+.++.+++ ++.+
T Consensus       160 ~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~-------------~~--~~~~~~~~~~~~~~~~~-~~~~  223 (435)
T 4e54_B          160 GIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILR-------------VF--ASSDTINIWFCSLDVSA-SSRM  223 (435)
T ss_dssp             CCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEE-------------EE--ECCSSCSCCCCCEEEET-TTTE
T ss_pred             ccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCcee-------------EE--eccCCCCccEEEEEECC-CCCE
Confidence            35899999999999877889999999999999998753210             00  11124455667777776 7889


Q ss_pred             EEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceee---eeeCCCCCeE
Q 013274          119 FVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ---TLSGHRDGIM  194 (446)
Q Consensus       119 l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~---~l~~h~~~v~  194 (446)
                      |++|+.|++|++||+.... +..+. +.+.+.++++++..  ..++++|+.|+.|++||+++.....   ...+|...|.
T Consensus       224 l~~g~~dg~i~~wd~~~~~-~~~~~~h~~~v~~v~~~p~~--~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~  300 (435)
T 4e54_B          224 VVTGDNVGNVILLNMDGKE-LWNLRMHKKKVTHVALNPCC--DWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVN  300 (435)
T ss_dssp             EEEECSSSBEEEEESSSCB-CCCSBCCSSCEEEEEECTTC--SSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEE
T ss_pred             EEEEeCCCcEeeeccCcce-eEEEecccceEEeeeecCCC--ceEEEEecCcceeeEEecccccccceEEEeeecccccc
Confidence            9999999999999997543 33333 45668889998754  3588999999999999998875433   3468999999


Q ss_pred             EEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCC
Q 013274          195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGN  274 (446)
Q Consensus       195 sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (446)
                      +++|+|++++ |+|++.||+|++||++++.+...+...........                                  
T Consensus       301 ~~~~spdg~~-l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~----------------------------------  345 (435)
T 4e54_B          301 AACFSPDGAR-LLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHL----------------------------------  345 (435)
T ss_dssp             ECCBCTTSSE-EEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSS----------------------------------
T ss_pred             ceeECCCCCe-eEEEcCCCEEEEEECCCCccceEEecccccccccc----------------------------------
Confidence            9999999985 78999999999999998766544422111000000                                  


Q ss_pred             ceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEe-ecCCcEEEEecCcCceeeeeeeEEEe
Q 013274          275 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSA-GSDSRIRLWDVESGRNTLVNFETVRL  353 (446)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sg-s~D~~i~lWd~~~~~~~~~~~~~~~~  353 (446)
                                   ..+..            .....+.+..+.+++++..++.+ ..++.|++||+.+++......   ..
T Consensus       346 -------------~~~~~------------~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~---~~  397 (435)
T 4e54_B          346 -------------TPIKA------------AWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY---DP  397 (435)
T ss_dssp             -------------CCCBC------------EECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC---CS
T ss_pred             -------------eeEEE------------EEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe---CC
Confidence                         00000            00012335566778887765544 455689999999876422111   11


Q ss_pred             ecCCCeE-EEEcCCCcEEEEeCCCceEEEEeecCce
Q 013274          354 QTSKPIQ-LATTQDPAVVFVPCMTAVKAFDIWSGKT  388 (446)
Q Consensus       354 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~  388 (446)
                      +...... .+++|++.+++++.++.+++|++.+++.
T Consensus       398 ~~~~v~s~~~fspdg~~lasg~d~~i~iW~~~~gk~  433 (435)
T 4e54_B          398 ESSGISSLNEFNPMGDTLASAMGYHILIWSQQEART  433 (435)
T ss_dssp             SCCCCCCEEEECTTSSCEEEECSSEEEECCCC----
T ss_pred             CCCcEEEEEEECCCCCEEEEEcCCcEEEEECCcCee
Confidence            1222333 4689999999998888999999988765

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.5e-28  Score=234.04  Aligned_cols=228  Identities=11%  Similarity=0.130  Sum_probs=173.9

Q ss_pred             CCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCC---------CCceeee
Q 013274          115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA---------SGAISQT  185 (446)
Q Consensus       115 ~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~---------~~~~~~~  185 (446)
                      ++.+++||+.|++|++||+.+++.+..+. .+.+..+.+++.      +++++.|+.|++|+.+         ++..+..
T Consensus        47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~------~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~  119 (343)
T 3lrv_A           47 DKWVCMCRCEDGALHFTQLKDSKTITTIT-TPNPRTGGEHPA------IISRGPCNRLLLLYPGNQITILDSKTNKVLRE  119 (343)
T ss_dssp             EEEEEEEEEETTEEEEEEESSSSCEEEEE-EECCCTTCCCCS------EEEECSTTEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEEEEEe-cCCceeeeeCCc------eEEecCCCeEEEEEccCceEEeecCCcceeEE
Confidence            56799999999999999999998887766 223444444442      8899999999999665         5554544


Q ss_pred             ee-CCCCCeEEEEEec--CCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcC
Q 013274          186 LS-GHRDGIMTVEWST--SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVK  262 (446)
Q Consensus       186 l~-~h~~~v~sv~~s~--~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (446)
                      +. +|.+.|.+++|+|  ++++ +++++.||+|++||++++.++..+.                                
T Consensus       120 ~~~~~~~~v~~~~~~~~~~~~~-l~s~s~dg~i~~wd~~~~~~~~~~~--------------------------------  166 (343)
T 3lrv_A          120 IEVDSANEIIYMYGHNEVNTEY-FIWADNRGTIGFQSYEDDSQYIVHS--------------------------------  166 (343)
T ss_dssp             EECCCSSCEEEEECCC---CCE-EEEEETTCCEEEEESSSSCEEEEEC--------------------------------
T ss_pred             eecCCCCCEEEEEcCCCCCCCE-EEEEeCCCcEEEEECCCCcEEEEEe--------------------------------
Confidence            44 7888999999999  8875 7899999999999998765432210                                


Q ss_pred             CCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCc
Q 013274          263 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR  342 (446)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~  342 (446)
                                                                 ..|...|++++|+|+|.+|++|+.|++|++||+.+++
T Consensus       167 -------------------------------------------~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~  203 (343)
T 3lrv_A          167 -------------------------------------------AKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPD  203 (343)
T ss_dssp             -------------------------------------------CCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTT
T ss_pred             -------------------------------------------cCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCC
Confidence                                                       1233458999999999999999999999999999876


Q ss_pred             eeeeeeeEEEe-ecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecc---cccceE--EEEEcCCCCEEEEeeC
Q 013274          343 NTLVNFETVRL-QTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRG---HYEYVN--CCCFSSQDQELYTGGN  416 (446)
Q Consensus       343 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~g---H~~~v~--~~~fSpd~~~lvtgs~  416 (446)
                      .....+   .. +......++++|++..+++++.+.+++||+.+++....+..   |...+.  +++|+|++++|++|+.
T Consensus       204 ~~~~~~---~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~  280 (343)
T 3lrv_A          204 QASSRF---PVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSN  280 (343)
T ss_dssp             SCCEEC---CCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEET
T ss_pred             CCccEE---eccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecC
Confidence            431222   22 34556778999999999988878999999988876554443   555554  6999999999999999


Q ss_pred             -CCcEEEeCCCCC
Q 013274          417 -DRQILVWCPSRH  428 (446)
Q Consensus       417 -D~~v~vW~~~~~  428 (446)
                       |+.|+||+.+..
T Consensus       281 ~d~~i~v~~~~~~  293 (343)
T 3lrv_A          281 ESNSLTIYKFDKK  293 (343)
T ss_dssp             TTTEEEEEEECTT
T ss_pred             CCCcEEEEEEccc
Confidence             999999988644

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.8e-29  Score=245.76  Aligned_cols=245  Identities=11%  Similarity=0.084  Sum_probs=185.8

Q ss_pred             CCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCcc-----ccEeEEEEeecC
Q 013274           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHK-----YAISSAIWYPVD  115 (446)
Q Consensus        41 ~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~-----~~V~~~~~~~~~  115 (446)
                      +|...|.+++||| +|..||+++.||+|+|||.+..               +.    ... |.     ..|.+++|+| +
T Consensus        83 ~~~~~V~~vawSP-dG~~LAs~s~dg~V~iwd~~~~---------------l~----~l~-~~~~~~~~sv~svafSP-D  140 (588)
T 2j04_A           83 QPVCYPRVCKPSP-IDDWMAVLSNNGNVSVFKDNKM---------------LT----NLD-SKGNLSSRTYHCFEWNP-I  140 (588)
T ss_dssp             SCSCCEEEEEECS-SSSCEEEEETTSCEEEEETTEE---------------EE----ECC-CSSCSTTTCEEEEEECS-S
T ss_pred             CCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCce---------------ee----ecc-CCCccccccEEEEEEcC-C
Confidence            7789999999997 6889999999999999996430               00    011 22     3588999987 8


Q ss_pred             CcEEEEEeCCCeEEEEECCCCee-------eEEEec-----CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCce-
Q 013274          116 TGLFVTGSYDHYVKVWDTNCTRV-------VMNFKM-----PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI-  182 (446)
Q Consensus       116 ~~~l~s~s~D~~i~iWd~~~~~~-------~~~~~~-----~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~-  182 (446)
                      +++||+|+.||+|++||+.++..       +.++..     .+.+.+++++|+   +  +++++.|+.|++||+.++.. 
T Consensus       141 G~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd---g--Laass~D~tVrlWd~~~~~~~  215 (588)
T 2j04_A          141 ESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYED---V--LVAALSNNSVFSMTVSASSHQ  215 (588)
T ss_dssp             SSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT---E--EEEEETTCCEEEECCCSSSSC
T ss_pred             CCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCC---c--EEEEeCCCeEEEEECCCCccc
Confidence            99999999999999999998753       455432     246899999984   3  67888899999999988874 


Q ss_pred             --eeee-eCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCC
Q 013274          183 --SQTL-SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNS  259 (446)
Q Consensus       183 --~~~l-~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (446)
                        .+++ .+|...|.+|+|+  ++ .+|+++ |++|++||+.++.....                               
T Consensus       216 ~~~~tL~~~h~~~V~svaFs--g~-~LASa~-~~tIkLWd~~~~~~~~~-------------------------------  260 (588)
T 2j04_A          216 PVSRMIQNASRRKITDLKIV--DY-KVVLTC-PGYVHKIDLKNYSISSL-------------------------------  260 (588)
T ss_dssp             CCEEEEECCCSSCCCCEEEE--TT-EEEEEC-SSEEEEEETTTTEEEEE-------------------------------
T ss_pred             cceeeecccccCcEEEEEEE--CC-EEEEEe-CCeEEEEECCCCeEEEE-------------------------------
Confidence              3567 4899999999999  45 467776 79999999876432100                               


Q ss_pred             CcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEE--ccCCCEEEEeecCCcEEEEe
Q 013274          260 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKV--TEDGMYLLSAGSDSRIRLWD  337 (446)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~f--s~dg~~l~sgs~D~~i~lWd  337 (446)
                                                                   ..+|.+.|..++|  +||+..|++++.||+ |+|.
T Consensus       261 ---------------------------------------------~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~  294 (588)
T 2j04_A          261 ---------------------------------------------KTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLL  294 (588)
T ss_dssp             ---------------------------------------------ECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEE
T ss_pred             ---------------------------------------------EcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEe
Confidence                                                         1257788999999  999999999999999 9998


Q ss_pred             cCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeC
Q 013274          338 VESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGN  416 (446)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~  416 (446)
                      ...                    +.++|++.+++.. ...+++|+...+ ....+.+ ...|.+++|||||+.||+++.
T Consensus       295 ~d~--------------------~~~spd~~l~a~~-d~~v~lW~~~g~-~l~~~~~-~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          295 EDE--------------------LHVTADNIIAPYL-EKKFKKWSTIWN-EFNNYET-TLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             SSS--------------------EEEECCCSSHHHH-HHHHHHTTTTTT-SSSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred             ecc--------------------EEECCCceEEEEc-CCEEEEEECCCC-ceeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence            651                    2244555444332 346777765333 3445555 778999999999999999874

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.6e-27  Score=225.40  Aligned_cols=257  Identities=15%  Similarity=0.248  Sum_probs=204.3

Q ss_pred             ccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeC
Q 013274           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI  177 (446)
Q Consensus        99 ~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~  177 (446)
                      ..+|...|+++.++| ++++|++++.|+.|++||+.+++.+..+. +.+.+.++++++.   ..+|++++.|+.|++||+
T Consensus        28 l~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~s~~~dg~i~iwd~  103 (369)
T 3zwl_B           28 LTGHERPLTQVKYNK-EGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCF---TKYCVTGSADYSIKLWDV  103 (369)
T ss_dssp             EECCSSCEEEEEECT-TSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTT---SSEEEEEETTTEEEEEET
T ss_pred             EEEeeceEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCC---CCEEEEEeCCCeEEEEEC
Confidence            358999999999987 78899999999999999999999888776 4566888888874   458899999999999999


Q ss_pred             CCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCC-----CcEEEEEccCCceeEEeecccccccCCCcccccceeeccc
Q 013274          178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCD-----GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKS  252 (446)
Q Consensus       178 ~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~D-----g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (446)
                      ++++.+..+. |...|.++.|+|+++. +++++.+     +.|++||++.......+.....                  
T Consensus       104 ~~~~~~~~~~-~~~~v~~~~~~~~~~~-l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~------------------  163 (369)
T 3zwl_B          104 SNGQCVATWK-SPVPVKRVEFSPCGNY-FLAILDNVMKNPGSINIYEIERDSATHELTKVSE------------------  163 (369)
T ss_dssp             TTCCEEEEEE-CSSCEEEEEECTTSSE-EEEEECCBTTBCCEEEEEEEEECTTTCCEEEECS------------------
T ss_pred             CCCcEEEEee-cCCCeEEEEEccCCCE-EEEecCCccCCCCEEEEEEecCCccceeeccccc------------------
Confidence            9999888887 8899999999999985 6788888     9999999875432111100000                  


Q ss_pred             cccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCccccccccccccc--CeEEEEEccCCCEEEEeecC
Q 013274          253 LSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYG--AVTGLKVTEDGMYLLSAGSD  330 (446)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~fs~dg~~l~sgs~D  330 (446)
                                                                     ........|.+  .+.+++|+|++++|++++.|
T Consensus       164 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  196 (369)
T 3zwl_B          164 -----------------------------------------------EPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD  196 (369)
T ss_dssp             -----------------------------------------------SCSEEEECCTTCCCEEEEEECGGGCEEEEEETT
T ss_pred             -----------------------------------------------ceeeeccCCcCccceeEEEEcCCCCEEEEEcCC
Confidence                                                           00001123344  79999999999999999999


Q ss_pred             CcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeC-CCceEEEEeecCceEEEecccccceEEEEEcCCCC
Q 013274          331 SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQ  409 (446)
Q Consensus       331 ~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~  409 (446)
                      +.|++||+.+.....   .....+......+++++++..+++++ ...+++||+.+++....+. |...+.+++|+|+++
T Consensus       197 g~i~i~d~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~  272 (369)
T 3zwl_B          197 GKISKYDVSNNYEYV---DSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKE  272 (369)
T ss_dssp             SEEEEEETTTTTEEE---EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSS
T ss_pred             CEEEEEECCCCcEeE---EEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCc
Confidence            999999998733222   22223344566788999998887765 4689999999999888887 888999999999999


Q ss_pred             EEEEeeCCC--------------cEEEeCCCCCCC
Q 013274          410 ELYTGGNDR--------------QILVWCPSRHIS  430 (446)
Q Consensus       410 ~lvtgs~D~--------------~v~vW~~~~~~~  430 (446)
                      +|++++.++              .+++|+......
T Consensus       273 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  307 (369)
T 3zwl_B          273 FIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE  307 (369)
T ss_dssp             EEEEEECCC-------------CEEEEEETTTCCE
T ss_pred             eEEEeecCCCceEEEEecCCCcceeEEEecCCCcc
Confidence            999999998              899999876543

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.96  E-value=6.4e-28  Score=231.84  Aligned_cols=201  Identities=13%  Similarity=0.140  Sum_probs=155.1

Q ss_pred             CCccceeEEEeecCCCCEEE--EeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274           41 PHKGSINSLQVDLTEERYLL--SGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (446)
Q Consensus        41 ~H~~~v~~l~~s~~~~~~l~--s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~  118 (446)
                      .+...+.+++||| +|++|+  |++.|++|+|||++++...            ..      ..|...|.++.|+| ++++
T Consensus       131 ~~~~~~~~v~fSp-Dg~~la~as~~~d~~i~iwd~~~~~~~------------~~------~~~~~~V~~v~fsp-dg~~  190 (365)
T 4h5i_A          131 NADDYTKLVYISR-EGTVAAIASSKVPAIMRIIDPSDLTEK------------FE------IETRGEVKDLHFST-DGKV  190 (365)
T ss_dssp             CTTCCEEEEEECT-TSSCEEEEESCSSCEEEEEETTTTEEE------------EE------EECSSCCCEEEECT-TSSE
T ss_pred             CcccCEEEEEEcC-CCCEEEEEECCCCCEEEEeECCCCcEE------------EE------eCCCCceEEEEEcc-CCce
Confidence            3456789999997 577765  5557999999999865421            11      14667899999987 8899


Q ss_pred             EEEEeCCCeEEEEECCCCeeeEEEec---CCceEEeeeccCCCCceEEEEeeCCC----cEEEEeCCCCce----eeeee
Q 013274          119 FVTGSYDHYVKVWDTNCTRVVMNFKM---PGKVYRTAMSPLAASHMLIAAGTEDV----QVRLCDIASGAI----SQTLS  187 (446)
Q Consensus       119 l~s~s~D~~i~iWd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~lasgs~d~----~v~vwd~~~~~~----~~~l~  187 (446)
                      +++++.| .+++|+..++..+.....   ...+.+++|+|+   ..++++++.|+    .+++||+.....    ...+.
T Consensus       191 l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspd---g~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~  266 (365)
T 4h5i_A          191 VAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIAD---DTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVT  266 (365)
T ss_dssp             EEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEET---TEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCC---CCEEEEEecCCcceeEEeecccccceecceeeeeec
Confidence            9999866 566666666665543332   334677788774   45788887776    688999877643    35678


Q ss_pred             CCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCcc
Q 013274          188 GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQ  267 (446)
Q Consensus       188 ~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (446)
                      +|...|++++|+|++++ ||+|+.|++|+|||++++++++.+                                      
T Consensus       267 ~~~~~V~~~~~Spdg~~-lasgs~D~~V~iwd~~~~~~~~~~--------------------------------------  307 (365)
T 4h5i_A          267 NRFKGITSMDVDMKGEL-AVLASNDNSIALVKLKDLSMSKIF--------------------------------------  307 (365)
T ss_dssp             SSCSCEEEEEECTTSCE-EEEEETTSCEEEEETTTTEEEEEE--------------------------------------
T ss_pred             CCCCCeEeEEECCCCCc-eEEEcCCCEEEEEECCCCcEEEEe--------------------------------------
Confidence            99999999999999985 799999999999999877654322                                      


Q ss_pred             ccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcC
Q 013274          268 KRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG  341 (446)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~  341 (446)
                                                           ..+|.++|++|+|+|||++|||||.|++|||||+...
T Consensus       308 -------------------------------------~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          308 -------------------------------------KQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             -------------------------------------TTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             -------------------------------------cCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence                                                 1378899999999999999999999999999999753

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.96  E-value=1.3e-26  Score=226.97  Aligned_cols=261  Identities=19%  Similarity=0.293  Sum_probs=190.1

Q ss_pred             CCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEE
Q 013274           40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF  119 (446)
Q Consensus        40 ~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l  119 (446)
                      .+|...|++|+|+| ++++|++|+.||+|+|||++++...                 ....+|...|.++.+   ++.+|
T Consensus       144 ~~~~~~V~sv~fsp-dg~~lasgs~Dg~v~iWd~~~~~~~-----------------~~~~~h~~~v~~~s~---~~~~l  202 (420)
T 4gga_A          144 EQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRL-----------------RNMTSHSARVGSLSW---NSYIL  202 (420)
T ss_dssp             CSTTCCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEE-----------------EEECCCSSCEEEEEE---ETTEE
T ss_pred             cCCCCcEEEEEECC-CCCEEEEEECCCeEEEEEcCCCcEE-----------------EEEeCCCCceEEEee---CCCEE
Confidence            47888999999997 6889999999999999999875421                 123578888887765   46799


Q ss_pred             EEEeCCCeEEEEECCCCe-eeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc----eeeeeeCCCCCe
Q 013274          120 VTGSYDHYVKVWDTNCTR-VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA----ISQTLSGHRDGI  193 (446)
Q Consensus       120 ~s~s~D~~i~iWd~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~----~~~~l~~h~~~v  193 (446)
                      ++|+.|+++++||..... .+..+. +...+..+.+.+.   ..++++++.|+.|++||..++.    .+.....|.+.|
T Consensus       203 ~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~---g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V  279 (420)
T 4gga_A          203 SSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD---GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAV  279 (420)
T ss_dssp             EEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT---SSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCE
T ss_pred             EEEeCCCceeEeeecccceeeEEecccccceeeeeecCC---CCeeeeeeccccceEEeeccccccceeeeeecccCCce
Confidence            999999999999987643 333343 3445666666664   4589999999999999998775    345677899999


Q ss_pred             EEEEEecCCCeEEEE--eeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCcccccc
Q 013274          194 MTVEWSTSSEWILVT--GGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSA  271 (446)
Q Consensus       194 ~sv~~s~~~~~~l~S--~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (446)
                      .+++|+|.+..++++  |+.|++|++||++++.+...+.                                         
T Consensus       280 ~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~-----------------------------------------  318 (420)
T 4gga_A          280 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-----------------------------------------  318 (420)
T ss_dssp             EEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE-----------------------------------------
T ss_pred             eeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec-----------------------------------------
Confidence            999999988877665  4579999999998876543321                                         


Q ss_pred             CCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEee--cCCcEEEEecCcCceeeeeee
Q 013274          272 NGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG--SDSRIRLWDVESGRNTLVNFE  349 (446)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs--~D~~i~lWd~~~~~~~~~~~~  349 (446)
                                                          +...+.++.|+|++..+++++  .|++|+|||+.+++..    .
T Consensus       319 ------------------------------------~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v----~  358 (420)
T 4gga_A          319 ------------------------------------AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV----A  358 (420)
T ss_dssp             ------------------------------------CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE----E
T ss_pred             ------------------------------------cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEE----E
Confidence                                                123488899999999988765  7999999999987532    2


Q ss_pred             EEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEc
Q 013274          350 TVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFS  405 (446)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fS  405 (446)
                      .+..+...+..++++|++.++++++. ..+++||+.+....+....|...+....|.
T Consensus       359 ~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~~  415 (420)
T 4gga_A          359 ELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSLI  415 (420)
T ss_dssp             EECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC----------------
T ss_pred             EEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCccccccC
Confidence            33334556677899999998888765 579999998877766666666655444443

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.96  E-value=1.9e-26  Score=218.30  Aligned_cols=246  Identities=17%  Similarity=0.307  Sum_probs=195.8

Q ss_pred             cccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCe-----eeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCc
Q 013274           98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR-----VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQ  171 (446)
Q Consensus        98 ~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~  171 (446)
                      ++.||.+.|+++.|+|.++++|+|||.|++|+|||+.+.+     +...+. +.+.+.++.+++.   ..+|++++.|+.
T Consensus        33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~d---g~~l~s~~~d~~  109 (340)
T 4aow_A           33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD---GQFALSGSWDGT  109 (340)
T ss_dssp             EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTT---SSEEEEEETTSE
T ss_pred             EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCC---CCEEEEEccccc
Confidence            4579999999999998668899999999999999987654     233333 3456788888874   458999999999


Q ss_pred             EEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeecc
Q 013274          172 VRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISK  251 (446)
Q Consensus       172 v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (446)
                      |++|+...+........+...+..+.++++++. |++++.|+.+++||++.......                       
T Consensus       110 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~s~d~~~~~~d~~~~~~~~~-----------------------  165 (340)
T 4aow_A          110 LRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQ-IVSGSRDKTIKLWNTLGVCKYTV-----------------------  165 (340)
T ss_dssp             EEEEETTTTEEEEEEECCSSCEEEEEECTTSSC-EEEEETTSCEEEECTTSCEEEEE-----------------------
T ss_pred             ceEEeecccceeeeecCCCCceeEEEEeecCcc-ceeecCCCeEEEEEeCCCceEEE-----------------------
Confidence            999999999888888889999999999999875 78999999999999865321100                       


Q ss_pred             ccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCC--CEEEEeec
Q 013274          252 SLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG--MYLLSAGS  329 (446)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg--~~l~sgs~  329 (446)
                                                                          ...+|...+..++|++++  .++++++.
T Consensus       166 ----------------------------------------------------~~~~~~~~v~~~~~~~~~~~~~~~s~~~  193 (340)
T 4aow_A          166 ----------------------------------------------------QDESHSEWVSCVRFSPNSSNPIIVSCGW  193 (340)
T ss_dssp             ----------------------------------------------------CSSSCSSCEEEEEECSCSSSCEEEEEET
T ss_pred             ----------------------------------------------------EeccccCcccceEEccCCCCcEEEEEcC
Confidence                                                                013566779999998875  57899999


Q ss_pred             CCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCC
Q 013274          330 DSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQD  408 (446)
Q Consensus       330 D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~  408 (446)
                      |++|++||+.+++...    .+..+......++++|++.++++++. ..+++||+.+.+.+..+.+| ..|.+++|+|++
T Consensus       194 d~~i~i~d~~~~~~~~----~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~  268 (340)
T 4aow_A          194 DKLVKVWNLANCKLKT----NHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNR  268 (340)
T ss_dssp             TSCEEEEETTTTEEEE----EECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEECSSS
T ss_pred             CCEEEEEECCCCceee----EecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeecCCCC
Confidence            9999999999865321    22223445567889999998888754 68999999999988888866 579999999987


Q ss_pred             CEEEEeeCCCcEEEeCCCCC
Q 013274          409 QELYTGGNDRQILVWCPSRH  428 (446)
Q Consensus       409 ~~lvtgs~D~~v~vW~~~~~  428 (446)
                      .+ ++++.|++|+||+++..
T Consensus       269 ~~-~~~~~d~~i~iwd~~~~  287 (340)
T 4aow_A          269 YW-LCAATGPSIKIWDLEGK  287 (340)
T ss_dssp             SE-EEEEETTEEEEEETTTT
T ss_pred             ce-eeccCCCEEEEEECCCC
Confidence            65 46677999999998754

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.96  E-value=1.9e-26  Score=226.77  Aligned_cols=234  Identities=23%  Similarity=0.387  Sum_probs=186.3

Q ss_pred             cCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCC
Q 013274          100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA  178 (446)
Q Consensus       100 ~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~  178 (446)
                      .+|...|.++.+   +++++++|+.|++|++||+.+++.+..+. +.+.+.++.+     +..++++|+.|+.|++||++
T Consensus       130 ~~~~~~v~~~~~---d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~-----~~~~l~sg~~dg~i~vwd~~  201 (435)
T 1p22_A          130 SETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY-----DERVIITGSSDSTVRVWDVN  201 (435)
T ss_dssp             CSSCCCEEEEEC---CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC-----CSSEEEEEETTSCEEEEESS
T ss_pred             cCCCCcEEEEEE---CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE-----CCCEEEEEcCCCeEEEEECC
Confidence            356777887654   68899999999999999999998887776 3455666666     23589999999999999999


Q ss_pred             CCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCC
Q 013274          179 SGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQN  258 (446)
Q Consensus       179 ~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (446)
                      +++.+..+.+|.+.|.++.|++  . .+++|+.||+|++||++++......                             
T Consensus       202 ~~~~~~~~~~h~~~v~~l~~~~--~-~l~s~s~dg~i~vwd~~~~~~~~~~-----------------------------  249 (435)
T 1p22_A          202 TGEMLNTLIHHCEAVLHLRFNN--G-MMVTCSKDRSIAVWDMASPTDITLR-----------------------------  249 (435)
T ss_dssp             SCCEEEEECCCCSCEEEEECCT--T-EEEEEETTSCEEEEECSSSSCCEEE-----------------------------
T ss_pred             CCcEEEEEcCCCCcEEEEEEcC--C-EEEEeeCCCcEEEEeCCCCCCceee-----------------------------
Confidence            9999999999999999999974  3 5799999999999999764321100                             


Q ss_pred             CCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEec
Q 013274          259 SSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDV  338 (446)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~  338 (446)
                                                                  ....+|.+.|.+++|  ++.+|++|+.|++|++||+
T Consensus       250 --------------------------------------------~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~  283 (435)
T 1p22_A          250 --------------------------------------------RVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNT  283 (435)
T ss_dssp             --------------------------------------------EEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET
T ss_pred             --------------------------------------------eEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEEC
Confidence                                                        012357788999998  7899999999999999999


Q ss_pred             CcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEe-CCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCC
Q 013274          339 ESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVP-CMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND  417 (446)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D  417 (446)
                      .+++...    .+..+......+.+  ++..++++ ..+.+++||+.+++.+.++.+|...|.+++|  ++++|++|+.|
T Consensus       284 ~~~~~~~----~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~d  355 (435)
T 1p22_A          284 STCEFVR----TLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYD  355 (435)
T ss_dssp             TTCCEEE----EEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETT
T ss_pred             CcCcEEE----EEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCC
Confidence            9875321    22222233333444  45566665 4568999999999999999999999999999  88999999999


Q ss_pred             CcEEEeCCCC
Q 013274          418 RQILVWCPSR  427 (446)
Q Consensus       418 ~~v~vW~~~~  427 (446)
                      ++|++|++..
T Consensus       356 g~i~vwd~~~  365 (435)
T 1p22_A          356 GKIKVWDLVA  365 (435)
T ss_dssp             SCEEEEEHHH
T ss_pred             CcEEEEECCC
Confidence            9999999753

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=4.2e-27  Score=225.94  Aligned_cols=212  Identities=18%  Similarity=0.315  Sum_probs=171.9

Q ss_pred             ccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECC--CCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEE
Q 013274           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTN--CTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLC  175 (446)
Q Consensus        99 ~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vw  175 (446)
                      ..+|...|.++.|+| ++++|++|+.|++|++||+.  +++.+..+. +.+.+.++.+++.. +..+|++++.|+.|++|
T Consensus         7 ~~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~l~s~~~dg~v~iw   84 (379)
T 3jrp_A            7 ANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-FGTILASCSYDGKVLIW   84 (379)
T ss_dssp             EEECCCCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG-GCSEEEEEETTSCEEEE
T ss_pred             ecCCcccEEEEEEcC-CCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCC-CCCEEEEeccCCEEEEE
Confidence            358999999999987 78899999999999999997  444555554 44568888887642 24589999999999999


Q ss_pred             eCCCCc--eeeeeeCCCCCeEEEEEecC--CCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeecc
Q 013274          176 DIASGA--ISQTLSGHRDGIMTVEWSTS--SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISK  251 (446)
Q Consensus       176 d~~~~~--~~~~l~~h~~~v~sv~~s~~--~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (446)
                      |++++.  ....+.+|...|.+++|+|+  +. +|++++.|+.|++||++.......+                      
T Consensus        85 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~----------------------  141 (379)
T 3jrp_A           85 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPI----------------------  141 (379)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCTTSCCCEE----------------------
T ss_pred             EcCCCceeEeeeecCCCcceEEEEeCCCCCCC-EEEEecCCCcEEEEecCCCCceeeE----------------------
Confidence            999987  67788899999999999998  66 4789999999999998764211000                      


Q ss_pred             ccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEcc------------
Q 013274          252 SLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE------------  319 (446)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~------------  319 (446)
                                                                          ...+|...|.+++|+|            
T Consensus       142 ----------------------------------------------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~  169 (379)
T 3jrp_A          142 ----------------------------------------------------IIDAHAIGVNSASWAPATIEEDGEHNGT  169 (379)
T ss_dssp             ----------------------------------------------------EEECCTTCEEEEEECCCC----------
T ss_pred             ----------------------------------------------------EecCCCCceEEEEEcCccccccccccCC
Confidence                                                                1135677899999999            


Q ss_pred             -CCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccc
Q 013274          320 -DGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEY  398 (446)
Q Consensus       320 -dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~  398 (446)
                       ++.+|++|+.|+.|++||+.++....                                         .....+.+|...
T Consensus       170 ~~~~~l~~~~~dg~i~i~d~~~~~~~~-----------------------------------------~~~~~~~~h~~~  208 (379)
T 3jrp_A          170 KESRKFVTGGADNLVKIWKYNSDAQTY-----------------------------------------VLESTLEGHSDW  208 (379)
T ss_dssp             CTTCEEEEEETTSCEEEEEEETTTTEE-----------------------------------------EEEEEECCCSSC
T ss_pred             CCCCEEEEEeCCCeEEEEEecCCCcce-----------------------------------------eeEEEEecccCc
Confidence             79999999999999999987653211                                         112456789999


Q ss_pred             eEEEEEcCC---CCEEEEeeCCCcEEEeCCCCC
Q 013274          399 VNCCCFSSQ---DQELYTGGNDRQILVWCPSRH  428 (446)
Q Consensus       399 v~~~~fSpd---~~~lvtgs~D~~v~vW~~~~~  428 (446)
                      |++++|+|+   +++|++|+.|+.|+||++...
T Consensus       209 v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~  241 (379)
T 3jrp_A          209 VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE  241 (379)
T ss_dssp             EEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred             EeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence            999999999   899999999999999998764

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.95  E-value=2e-26  Score=220.61  Aligned_cols=267  Identities=12%  Similarity=0.090  Sum_probs=178.4

Q ss_pred             cceeEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEee
Q 013274           34 NYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYP  113 (446)
Q Consensus        34 ~~~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~  113 (446)
                      .++.+...+...+..+.+.++.+.++++|+.|++|+|||+.++...            ..      ..|...|.++.+.+
T Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~------------~~------~~~~~~v~~v~~~~  110 (355)
T 3vu4_A           49 PVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDV------------SR------IKVDAPVKDLFLSR  110 (355)
T ss_dssp             TEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEE------------EE------EECSSCEEEEEECS
T ss_pred             CcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEE------------EE------EECCCceEEEEEcC
Confidence            3344444444468888887654444478889999999998765421            11      12455788887764


Q ss_pred             cCCcEEEEEeCCCeEEEEECCCC-eeeEEEecCCceEEeeeccCCCCceEEEE--eeCCCcEEEEeCCCCc---------
Q 013274          114 VDTGLFVTGSYDHYVKVWDTNCT-RVVMNFKMPGKVYRTAMSPLAASHMLIAA--GTEDVQVRLCDIASGA---------  181 (446)
Q Consensus       114 ~~~~~l~s~s~D~~i~iWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~las--gs~d~~v~vwd~~~~~---------  181 (446)
                         +.++.+ .|++|++||+.++ +.+..+..  .....++++     .+++.  |+.|+.|++||++++.         
T Consensus       111 ---~~~~~~-~~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~-----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~  179 (355)
T 3vu4_A          111 ---EFIVVS-YGDVISVFKFGNPWKRITDDIR--FGGVCEFSN-----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGV  179 (355)
T ss_dssp             ---SEEEEE-ETTEEEEEESSTTCCBSSCCEE--EEEEEEEET-----TEEEEEESSCTTCEEEEECCC-----------
T ss_pred             ---CEEEEE-EcCEEEEEECCCCceeeEEecc--CCceEEEEc-----cEEEEeCCCcCcEEEEEECCCCCccccccccc
Confidence               345544 4789999999987 65554443  222233443     23343  7899999999999865         


Q ss_pred             -------eeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCc-EEEEEccCCceeEEeecccccccCCCcccccceeecccc
Q 013274          182 -------ISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGA-IRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSL  253 (446)
Q Consensus       182 -------~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~-I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (446)
                             ....+.+|.+.|.+++|+|++++ |+||+.|++ |++||++++.++..+.                       
T Consensus       180 ~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~-l~s~s~d~~~v~iwd~~~~~~~~~~~-----------------------  235 (355)
T 3vu4_A          180 QQKAILGKGVLIKAHTNPIKMVRLNRKSDM-VATCSQDGTIIRVFKTEDGVLVREFR-----------------------  235 (355)
T ss_dssp             -------CCEEECCCSSCEEEEEECTTSSE-EEEEETTCSEEEEEETTTCCEEEEEE-----------------------
T ss_pred             cccccCcccEEEEccCCceEEEEECCCCCE-EEEEeCCCCEEEEEECCCCcEEEEEE-----------------------
Confidence                   26788999999999999999885 799999998 9999998776544331                       


Q ss_pred             ccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccc-cccCeEEEEEccCCCEEEEeecCCc
Q 013274          254 SAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATA-HYGAVTGLKVTEDGMYLLSAGSDSR  332 (446)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~fs~dg~~l~sgs~D~~  332 (446)
                                                                          .+ |.+.|++++|+|+|++|++++.|++
T Consensus       236 ----------------------------------------------------~g~h~~~v~~~~~s~~~~~l~s~s~d~~  263 (355)
T 3vu4_A          236 ----------------------------------------------------RGLDRADVVDMKWSTDGSKLAVVSDKWT  263 (355)
T ss_dssp             ----------------------------------------------------CTTCCSCEEEEEECTTSCEEEEEETTCE
T ss_pred             ----------------------------------------------------cCCCCCcEEEEEECCCCCEEEEEECCCE
Confidence                                                                12 6778999999999999999999999


Q ss_pred             EEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEE
Q 013274          333 IRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELY  412 (446)
Q Consensus       333 i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lv  412 (446)
                      |++||+..+.....  ..  +  ...    +.+.  .  ....-....+.+        ...+......++|+||++.|+
T Consensus       264 v~iw~~~~~~~~~~--~~--~--~~~----~~~~--~--~~~~~~~~~~~~--------~~~~~~~~~~~a~~~d~~~l~  321 (355)
T 3vu4_A          264 LHVFEIFNDQDNKR--HA--L--KGW----INMK--Y--FQSEWSLCNFKL--------SVDKHVRGCKIAWISESSLVV  321 (355)
T ss_dssp             EEEEESSCCSCCCS--EE--T--TTT----EECC--C--CCCSSCSEEEEC--------CCCTTCCCCEEEESSSSEEEE
T ss_pred             EEEEEccCCCCccc--cc--c--cce----eecc--c--cccccceeEEEe--------ccCCCCCceEEEEeCCCCEEE
Confidence            99999986431100  00  0  000    0000  0  000000011111        112333457799999999999


Q ss_pred             EeeCCCcEEEeCCCC
Q 013274          413 TGGNDRQILVWCPSR  427 (446)
Q Consensus       413 tgs~D~~v~vW~~~~  427 (446)
                      +++.|+.+++|+...
T Consensus       322 ~~~~dg~~~~~~~~~  336 (355)
T 3vu4_A          322 VWPHTRMIETFKVVF  336 (355)
T ss_dssp             EETTTTEEEEEEEEE
T ss_pred             EEeCCCeEEEEEEEc
Confidence            999999999998753

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.95  E-value=2.1e-26  Score=217.71  Aligned_cols=267  Identities=17%  Similarity=0.204  Sum_probs=175.2

Q ss_pred             EeCCCccceeEEEeecC-CCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecC-
Q 013274           38 IVSPHKGSINSLQVDLT-EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD-  115 (446)
Q Consensus        38 ~~~~H~~~v~~l~~s~~-~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~-  115 (446)
                      .+.+|.+.|++|+|+|. ++++|++|+.||+|++||++++.......   ..+.+     ....+|...|.++.++|.. 
T Consensus        52 ~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~---~~~~~-----~~~~~~~~~v~~~~~~~~~~  123 (351)
T 3f3f_A           52 SWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGR---RWNKL-----CTLNDSKGSLYSVKFAPAHL  123 (351)
T ss_dssp             EEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSC---SEEEE-----EEECCCSSCEEEEEECCGGG
T ss_pred             eeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCccccccc---Cccee-----eeecccCCceeEEEEcCCCC
Confidence            35689999999999875 47899999999999999998754211000   00111     1235799999999998732 


Q ss_pred             CcEEEEEeCCCeEEEEECCCCeeeEEEe--------------cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc
Q 013274          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFK--------------MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA  181 (446)
Q Consensus       116 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~  181 (446)
                      +.+|++++.|++|++||+.+++.+..+.              ....+.++.+++...+..++++++.|+.+.+|+...+.
T Consensus       124 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~  203 (351)
T 3f3f_A          124 GLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK  203 (351)
T ss_dssp             CSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC
T ss_pred             CcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc
Confidence            7899999999999999998776543332              22346777888765456789999999999888888776


Q ss_pred             e--eeeeeCCCCCeEEEEEecCCC---eEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccC
Q 013274          182 I--SQTLSGHRDGIMTVEWSTSSE---WILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAG  256 (446)
Q Consensus       182 ~--~~~l~~h~~~v~sv~~s~~~~---~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (446)
                      .  ...+.+|...|.+++|+|++.   .+|++++.||.|++||++.+...............        ........  
T Consensus       204 ~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--------~~~~~~~~--  273 (351)
T 3f3f_A          204 LHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNM--------FDNSADVD--  273 (351)
T ss_dssp             EEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC--------------------------------
T ss_pred             eeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceec--------cCCCcccc--
Confidence            5  678889999999999999972   36899999999999999865432211110000000        00000000  


Q ss_pred             CCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEE
Q 013274          257 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW  336 (446)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lW  336 (446)
                              ............     .       .................+|.+.|++++|+|+|++|+||+.|+.|++|
T Consensus       274 --------~~~~~~~~~~~~-----~-------~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw  333 (351)
T 3f3f_A          274 --------MDAQGRSDSNTE-----E-------KAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW  333 (351)
T ss_dssp             -------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEE
T ss_pred             --------cccccccccccc-----e-------eeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEE
Confidence                    000000000000     0       00000000001111245788999999999999999999999999999


Q ss_pred             ecCcCc
Q 013274          337 DVESGR  342 (446)
Q Consensus       337 d~~~~~  342 (446)
                      |+.+++
T Consensus       334 ~~~~~~  339 (351)
T 3f3f_A          334 KATYSN  339 (351)
T ss_dssp             EECTTS
T ss_pred             ecCcCc
Confidence            998764

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.95  E-value=1.6e-26  Score=220.79  Aligned_cols=246  Identities=18%  Similarity=0.268  Sum_probs=182.3

Q ss_pred             ccCccccEeEEEEeecC--CcEEEEEeCCCeEEEEECCC-Ceee-EEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEE
Q 013274           99 EHGHKYAISSAIWYPVD--TGLFVTGSYDHYVKVWDTNC-TRVV-MNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVR  173 (446)
Q Consensus        99 ~~gh~~~V~~~~~~~~~--~~~l~s~s~D~~i~iWd~~~-~~~~-~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~  173 (446)
                      ..+|...|.++.|+|..  +.+|++|+.|++|++||+.+ +..+ ..+. +.+.+.++++++.   ..+|++++.|+.|+
T Consensus        35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~s~~~dg~v~  111 (368)
T 3mmy_A           35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDD---GSKVFTASCDKTAK  111 (368)
T ss_dssp             SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTT---SSEEEEEETTSEEE
T ss_pred             ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcC---CCEEEEEcCCCcEE
Confidence            35899999999999854  68999999999999999987 4443 3333 4667888999874   45899999999999


Q ss_pred             EEeCCCCceeeeeeCCCCCeEEEEE--ecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeecc
Q 013274          174 LCDIASGAISQTLSGHRDGIMTVEW--STSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISK  251 (446)
Q Consensus       174 vwd~~~~~~~~~l~~h~~~v~sv~~--s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (446)
                      +||++++.... +.+|...|.++.|  +|+++ +|++++.||.|++||+++++++..+.                     
T Consensus       112 iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~---------------------  168 (368)
T 3mmy_A          112 MWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSNPMMVLQ---------------------  168 (368)
T ss_dssp             EEETTTTEEEE-EEECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCSSCSEEEE---------------------
T ss_pred             EEEcCCCCcee-eccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCCcEEEEEe---------------------
Confidence            99999988665 5679999999999  77776 57899999999999998765433221                     


Q ss_pred             ccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCC
Q 013274          252 SLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS  331 (446)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~  331 (446)
                                                                             . ...+.++.+.  +..+++++.|+
T Consensus       169 -------------------------------------------------------~-~~~~~~~~~~--~~~~~~~~~~~  190 (368)
T 3mmy_A          169 -------------------------------------------------------L-PERCYCADVI--YPMAVVATAER  190 (368)
T ss_dssp             -------------------------------------------------------C-SSCEEEEEEE--TTEEEEEEGGG
T ss_pred             -------------------------------------------------------c-CCCceEEEec--CCeeEEEeCCC
Confidence                                                                   0 1134555555  44788899999


Q ss_pred             cEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCc----EEEE-eCCCceEEEEeecC---ceEEEeccccc------
Q 013274          332 RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPA----VVFV-PCMTAVKAFDIWSG---KTCLTFRGHYE------  397 (446)
Q Consensus       332 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~d~~~~---~~~~~l~gH~~------  397 (446)
                      .+++|++............  ........+.+.++..    .+++ .....+++|++...   +....+.+|..      
T Consensus       191 ~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (368)
T 3mmy_A          191 GLIVYQLENQPSEFRRIES--PLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTS  268 (368)
T ss_dssp             CEEEEECSSSCEEEEECCC--SCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----C
T ss_pred             cEEEEEeccccchhhhccc--cccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccc
Confidence            9999999875432221111  0011112223322222    1444 45568999999877   55678888877      


Q ss_pred             ------ceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCCC
Q 013274          398 ------YVNCCCFSSQDQELYTGGNDRQILVWCPSRHIS  430 (446)
Q Consensus       398 ------~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~~  430 (446)
                            .|++++|+||+++|++|+.|+.|+||++.....
T Consensus       269 ~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~  307 (368)
T 3mmy_A          269 APQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTK  307 (368)
T ss_dssp             CCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE
T ss_pred             ccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcE
Confidence                  799999999999999999999999999986543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.95  E-value=4.2e-25  Score=213.62  Aligned_cols=285  Identities=15%  Similarity=0.116  Sum_probs=211.1

Q ss_pred             eCCCccceeEEEeecCCCCEE-EEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274           39 VSPHKGSINSLQVDLTEERYL-LSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (446)
Q Consensus        39 ~~~H~~~v~~l~~s~~~~~~l-~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~  117 (446)
                      +..|. .+.+++|+|+ +++| ++++.|++|++||+.+++..            ...     ..| ..+.++.++| +++
T Consensus        28 ~~~~~-~~~~~~~s~d-g~~l~~~~~~d~~i~v~d~~~~~~~------------~~~-----~~~-~~v~~~~~sp-dg~   86 (391)
T 1l0q_A           28 IPVGS-NPMGAVISPD-GTKVYVANAHSNDVSIIDTATNNVI------------ATV-----PAG-SSPQGVAVSP-DGK   86 (391)
T ss_dssp             EECSS-SEEEEEECTT-SSEEEEEEGGGTEEEEEETTTTEEE------------EEE-----ECS-SSEEEEEECT-TSS
T ss_pred             eecCC-CcceEEECCC-CCEEEEECCCCCeEEEEECCCCeEE------------EEE-----ECC-CCccceEECC-CCC
Confidence            34554 5899999974 5554 78889999999999765421            011     122 2788888887 666


Q ss_pred             EE-EEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEE
Q 013274          118 LF-VTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTV  196 (446)
Q Consensus       118 ~l-~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv  196 (446)
                      ++ ++++.|++|++||+.+++.+..+.....+..+++++..  ..++++++.|+.|++||+++++....+..| ..+.++
T Consensus        87 ~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~  163 (391)
T 1l0q_A           87 QVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDG--KKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGI  163 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTS--SEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEE
T ss_pred             EEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCC--CEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceE
Confidence            55 56667899999999999998888877778888888753  245578888999999999999988888766 456999


Q ss_pred             EEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCce
Q 013274          197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGV  276 (446)
Q Consensus       197 ~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (446)
                      .|+|++++++++++.|+.|++||++++.+...+                                               
T Consensus       164 ~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~-----------------------------------------------  196 (391)
T 1l0q_A          164 AVTPDGTKVYVANFDSMSISVIDTVTNSVIDTV-----------------------------------------------  196 (391)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEE-----------------------------------------------
T ss_pred             EECCCCCEEEEEeCCCCEEEEEECCCCeEEEEE-----------------------------------------------
Confidence            999999887688899999999999876543222                                               


Q ss_pred             eecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEee---cCCcEEEEecCcCceeeeeeeEEEe
Q 013274          277 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG---SDSRIRLWDVESGRNTLVNFETVRL  353 (446)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs---~D~~i~lWd~~~~~~~~~~~~~~~~  353 (446)
                                                    .|...+.+++|+|+|++|++++   .|+.|++||+.+++.. .   .+..
T Consensus       197 ------------------------------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~-~---~~~~  242 (391)
T 1l0q_A          197 ------------------------------KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT-A---RIPV  242 (391)
T ss_dssp             ------------------------------ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE-E---EEEC
T ss_pred             ------------------------------ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE-E---EEec
Confidence                                          1223478899999999998887   6899999999886432 1   1111


Q ss_pred             ecCCCeEEEEcCCCcEEEEe-C-CCceEEEEeecCceEEEecccccceE---EEE------------EcCCC--------
Q 013274          354 QTSKPIQLATTQDPAVVFVP-C-MTAVKAFDIWSGKTCLTFRGHYEYVN---CCC------------FSSQD--------  408 (446)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~d~~~~~~~~~l~gH~~~v~---~~~------------fSpd~--------  408 (446)
                       ...+..+++++++..+++. . ...+++||+.+++....+..|..+..   .+.            |+.+.        
T Consensus       243 -~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~  321 (391)
T 1l0q_A          243 -GPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLS  321 (391)
T ss_dssp             -CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETT
T ss_pred             -CCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeeccccccccccccccccccccccccc
Confidence             2234568889998877544 3 46899999999999988888766532   123            33322        


Q ss_pred             --CEEEEeeCCCcEEEeCCCCCC
Q 013274          409 --QELYTGGNDRQILVWCPSRHI  429 (446)
Q Consensus       409 --~~lvtgs~D~~v~vW~~~~~~  429 (446)
                        ..+.+.+.|.++++|+...+.
T Consensus       322 ~~~~~~~~~~~~~~~~W~~~~g~  344 (391)
T 1l0q_A          322 EPVQFTDLSKDATEWKWDFGDGS  344 (391)
T ss_dssp             CCEEEEECCBSCSEEEEECSSSC
T ss_pred             ceEEEEeCCCCceEEEEECCCCc
Confidence              346778889999999986543

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.95  E-value=2.1e-26  Score=223.52  Aligned_cols=266  Identities=12%  Similarity=0.109  Sum_probs=170.5

Q ss_pred             CCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEee-------
Q 013274           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYP-------  113 (446)
Q Consensus        41 ~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~-------  113 (446)
                      .|.+.+....++ .++.+|++|+.|++|+|||++++....            ........||.+.|.++.|+|       
T Consensus        87 ~~~~~~~~~~~~-~~~~~las~~~d~~v~lw~~~~~~~~~------------~~~~~~~~gH~~~v~~v~~~p~~~~~~~  153 (393)
T 4gq1_A           87 LHDGDGNVNSSP-VYSLFLACVCQDNTVRLIITKNETIIT------------QHVLGGKSGHHNFVNDIDIADVYSADNR  153 (393)
T ss_dssp             ----------CC-EEEEEEEEEETTSCEEEEEEETTEEEE------------EEEECTTTSCSSCEEEEEEEEEECTTCS
T ss_pred             ccCCCcceeecC-CCCCEEEEEeCCCcEEEEECCCCccce------------eeeecccCCCCCceEEEEEccccccccC
Confidence            344444444454 467799999999999999987654210            001124579999999999987       


Q ss_pred             cCCcEEEEEeCCCeEEEEECCCCeee-EEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeee-------
Q 013274          114 VDTGLFVTGSYDHYVKVWDTNCTRVV-MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT-------  185 (446)
Q Consensus       114 ~~~~~l~s~s~D~~i~iWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~-------  185 (446)
                      .++++|||||.|++|||||+.++.++ ..+.+.+.+.+++|+|..  ..+|++|+.|+.|++||++++.....       
T Consensus       154 ~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~--~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~  231 (393)
T 4gq1_A          154 LAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSN--PNQLIVGERNGNIRIFDWTLNLSAEENSQTELV  231 (393)
T ss_dssp             EEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTE--EEEEEEEETTSEEEEEETTCCC----------C
T ss_pred             CCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCC--CceEEecCCCCEEEEEECCCCcccccccccCCc
Confidence            36789999999999999999876654 455677788999998853  35899999999999999988753321       


Q ss_pred             ------------------eeCCCCCeEEEEEe-cCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccc
Q 013274          186 ------------------LSGHRDGIMTVEWS-TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRK  246 (446)
Q Consensus       186 ------------------l~~h~~~v~sv~~s-~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (446)
                                        ..+|...+.++.|+ |+++ .+++++.|+++++||++.+.....+........         
T Consensus       232 ~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~-~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~---------  301 (393)
T 4gq1_A          232 KNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGS-GILAMCKSGAWLRWNLFANNDYNEISDSTMKLG---------  301 (393)
T ss_dssp             SCCCSEEEESGGGC------CCSSSCSEEEEETTTTC-EEEEECTTSEEEEEEC--------------------------
T ss_pred             ccceEEecccccceeeeecccccccceeeeeecCCCC-EEEEEeCCCCEEEEECccCCCCceEeeecCccc---------
Confidence                              24688899999997 6666 478999999999999987543322211100000         


Q ss_pred             eeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEcc--CCCEE
Q 013274          247 VSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE--DGMYL  324 (446)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~--dg~~l  324 (446)
                                                  .....+....                    ...+ .......|+|  ++.++
T Consensus       302 ----------------------------~~~~~~~~~~--------------------~~~~-~~~~~~~~~~~~~~~~~  332 (393)
T 4gq1_A          302 ----------------------------PKNLLPNVQG--------------------ISLF-PSLLGACPHPRYMDYFA  332 (393)
T ss_dssp             ------------------------------CCSCSEEE--------------------ECSS-CCSSCCEECSSCTTEEE
T ss_pred             ----------------------------cEEEcccccc--------------------cccc-CcceeEEEccCCCCEEE
Confidence                                        0000000000                    0011 1122223443  55678


Q ss_pred             EEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEee
Q 013274          325 LSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIW  384 (446)
Q Consensus       325 ~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  384 (446)
                      ++|+.|++|++||+.+++....    ..........++++|++.++++++.+.+.+|.+.
T Consensus       333 ~sgs~Dg~V~lwd~~~~~~~~~----~~~~~~~V~svafspdG~~LA~as~~Gv~lvrL~  388 (393)
T 4gq1_A          333 TAHSQHGLIQLINTYEKDSNSI----PIQLGMPIVDFCWHQDGSHLAIATEGSVLLTRLM  388 (393)
T ss_dssp             EEETTTTEEEEEETTCTTCCEE----EEECSSCEEEEEECTTSSEEEEEESSEEEEEEEG
T ss_pred             EEECCCCEEEEEECCCCcEEEE----ecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEe
Confidence            8899999999999998764322    1122345567999999999999988888888774

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.95  E-value=1.6e-25  Score=219.99  Aligned_cols=230  Identities=20%  Similarity=0.380  Sum_probs=174.9

Q ss_pred             EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (446)
Q Consensus        38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~  117 (446)
                      .+.+|.+.|++|+|+|.+..+|++|+.||+|++||+.++....         .. ........+|...|.++.|+|.++.
T Consensus       176 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~---------~~-~~~~~~~~~h~~~v~~v~~~p~~~~  245 (430)
T 2xyi_A          176 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEH---------RV-IDAKNIFTGHTAVVEDVAWHLLHES  245 (430)
T ss_dssp             EEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGG---------GE-EECSEEECCCSSCEEEEEECSSCTT
T ss_pred             EecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCC---------ce-eccceeecCCCCCEeeeEEeCCCCC
Confidence            3568999999999997544499999999999999997642110         00 0011223589999999999987788


Q ss_pred             EEEEEeCCCeEEEEECCCC---eeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCC-CceeeeeeCCCCC
Q 013274          118 LFVTGSYDHYVKVWDTNCT---RVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS-GAISQTLSGHRDG  192 (446)
Q Consensus       118 ~l~s~s~D~~i~iWd~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~-~~~~~~l~~h~~~  192 (446)
                      +|++++.|+.|++||+.++   ..+..+. +.+.+.++++++..  ..++++|+.|+.|++||+++ +..+..+.+|.+.
T Consensus       246 ~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~--~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~  323 (430)
T 2xyi_A          246 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS--EFILATGSADKTVALWDLRNLKLKLHSFESHKDE  323 (430)
T ss_dssp             EEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSC--TTEEEEEETTSEEEEEETTCTTSCSEEEECCSSC
T ss_pred             EEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCC--CCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCC
Confidence            9999999999999999876   4555553 45668888998853  34789999999999999998 5678889999999


Q ss_pred             eEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccC
Q 013274          193 IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSAN  272 (446)
Q Consensus       193 v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (446)
                      |.++.|+|+++.+|++++.|+.|++||++.........                    .                  .. 
T Consensus       324 v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------------------~------------------~~-  364 (430)
T 2xyi_A          324 IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE--------------------D------------------AE-  364 (430)
T ss_dssp             EEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHH--------------------H------------------HH-
T ss_pred             EEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcc--------------------c------------------cc-
Confidence            99999999998778999999999999997532100000                    0                  00 


Q ss_pred             CCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCC-EEEEeecCCcEEEEecCcC
Q 013274          273 GNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM-YLLSAGSDSRIRLWDVESG  341 (446)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~sgs~D~~i~lWd~~~~  341 (446)
                                    .         +.........+|...|++++|+|++. +|++++.|+.|++|++...
T Consensus       365 --------------~---------~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          365 --------------D---------GPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             --------------H---------CCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             --------------c---------CCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence                          0         00000011246788899999999999 8999999999999998753

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.94  E-value=3.7e-25  Score=214.54  Aligned_cols=287  Identities=14%  Similarity=0.125  Sum_probs=180.7

Q ss_pred             CCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeec--CCcE
Q 013274           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV--DTGL  118 (446)
Q Consensus        41 ~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~--~~~~  118 (446)
                      +|.+.|++++|+|.++.+|++++.||+|++||+.++...            ..      ..+...+.++.+.+.  ++.+
T Consensus        97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~------------~~------~~~~~~~~~~~~~~~~~~~~~  158 (408)
T 4a11_B           97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTA------------DV------FNFEETVYSHHMSPVSTKHCL  158 (408)
T ss_dssp             CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEE------------EE------EECSSCEEEEEECSSCSSCCE
T ss_pred             cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccc------------ee------ccCCCceeeeEeecCCCCCcE
Confidence            599999999999867789999999999999999765321            01      124556777777664  3459


Q ss_pred             EEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc-eeeee----------
Q 013274          119 FVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA-ISQTL----------  186 (446)
Q Consensus       119 l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~-~~~~l----------  186 (446)
                      +++++.|+.|++||+.+++.+..+. +.+.+.++++++..  ..++++|+.|+.|++||++++. ....+          
T Consensus       159 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~--~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  236 (408)
T 4a11_B          159 VAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRY--DYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQA  236 (408)
T ss_dssp             EEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSC--TTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCC
T ss_pred             EEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCC--CcEEEEEcCCCcEEEEECCCCCccccccccccccccee
Confidence            9999999999999999988877776 45668888888753  2478999999999999998765 33333          


Q ss_pred             -----eCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCc
Q 013274          187 -----SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSV  261 (446)
Q Consensus       187 -----~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (446)
                           .+|...|.+++|+|++++ |++++.||.|++||++++.....+.....                           
T Consensus       237 ~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~---------------------------  288 (408)
T 4a11_B          237 VESANTAHNGKVNGLCFTSDGLH-LLTVGTDNRMRLWNSSNGENTLVNYGKVC---------------------------  288 (408)
T ss_dssp             TTTSSCSCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCBCCCCCCCCC---------------------------
T ss_pred             eccccccccCceeEEEEcCCCCE-EEEecCCCeEEEEECCCCccceecccccc---------------------------
Confidence                 679999999999999885 78999999999999987543111100000                           


Q ss_pred             CCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcC
Q 013274          262 KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG  341 (446)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~  341 (446)
                                                                  ......+........+..++.++.|+.|++||+.++
T Consensus       289 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~  324 (408)
T 4a11_B          289 --------------------------------------------NNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG  324 (408)
T ss_dssp             --------------------------------------------CCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC
T ss_pred             --------------------------------------------ccccccceeEEecCCCceEEEEecCCEEEEEECcCC
Confidence                                                        000000111112234456667788999999999987


Q ss_pred             ceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeC-CCceEEEEeecCceEEEecccccceEEEEEcC-CCCEEEEeeCCCc
Q 013274          342 RNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS-QDQELYTGGNDRQ  419 (446)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSp-d~~~lvtgs~D~~  419 (446)
                      +..    ..+..+......+++++++..+++++ +..+++|++.+++.+.....+...   ..+.| +...+.+++.|+.
T Consensus       325 ~~~----~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  397 (408)
T 4a11_B          325 EQI----TMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLNPAFEDAWSSSDEEGG  397 (408)
T ss_dssp             CEE----EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-----------------------------------
T ss_pred             cce----eeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---cccccccceeecccCccCc
Confidence            542    12222344566788999998888775 468999999988876655544322   23333 3445567888999


Q ss_pred             EEEeCCC
Q 013274          420 ILVWCPS  426 (446)
Q Consensus       420 v~vW~~~  426 (446)
                      +++|+.+
T Consensus       398 ~~~W~~~  404 (408)
T 4a11_B          398 TSAWSHP  404 (408)
T ss_dssp             -------
T ss_pred             eeecCCc
Confidence            9999765

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.94  E-value=3e-24  Score=212.10  Aligned_cols=274  Identities=15%  Similarity=0.122  Sum_probs=187.0

Q ss_pred             CCCccceeEEEeecCCCCEE-EEeeCCCcEEEEEcc--cCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC
Q 013274           40 SPHKGSINSLQVDLTEERYL-LSGASDSSVAVYDVQ--RATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (446)
Q Consensus        40 ~~H~~~v~~l~~s~~~~~~l-~s~s~Dg~i~lWd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~  116 (446)
                      .+|.+.|++++|+| ++++| ++|+.||+|+|||+.  ++...            ..+.   ..+|...|.++.|+| ++
T Consensus        99 ~~~~~~v~~~~~s~-d~~~l~~~~~~dg~v~iwd~~~~~~~~~------------~~~~---~~~~~~~v~~~~~sp-~~  161 (450)
T 2vdu_B           99 PPIYSYIRNLRLTS-DESRLIACADSDKSLLVFDVDKTSKNVL------------KLRK---RFCFSKRPNAISIAE-DD  161 (450)
T ss_dssp             -CCCCCEEEEEECT-TSSEEEEEEGGGTEEEEEEECSSSSSCE------------EEEE---EEECSSCEEEEEECT-TS
T ss_pred             CccCCceEEEEEcC-CCCEEEEEECCCCeEEEEECcCCCCcee------------eeee---cccCCCCceEEEEcC-CC
Confidence            47888999999997 56775 999999999999997  44321            0110   125678899999987 78


Q ss_pred             cEEEEEeCCCeEEEEECCCCeeeE----EE-ecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeee-eeCCC
Q 013274          117 GLFVTGSYDHYVKVWDTNCTRVVM----NF-KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT-LSGHR  190 (446)
Q Consensus       117 ~~l~s~s~D~~i~iWd~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~-l~~h~  190 (446)
                      .+|++|+.|+.|++|++.++....    .+ .+.+.+.++++++......+|++|+.|+.|++||++++..+.. +.+|.
T Consensus       162 ~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~  241 (450)
T 2vdu_B          162 TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHK  241 (450)
T ss_dssp             SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCS
T ss_pred             CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCC
Confidence            899999999999999998776442    22 2456688888988521246899999999999999999988777 66999


Q ss_pred             CCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccc
Q 013274          191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRS  270 (446)
Q Consensus       191 ~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (446)
                      +.|.+++|+ ++++ |++++.|++|++||+++++++..+........               +.    ...... +    
T Consensus       242 ~~v~~~~~s-d~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~---------------~~----~~~~~~-~----  295 (450)
T 2vdu_B          242 HFVSSICCG-KDYL-LLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKP---------------YL----NDQHLA-P----  295 (450)
T ss_dssp             SCEEEEEEC-STTE-EEEEESSSEEEEEETTTCCEEEEEECHHHHGG---------------GC----CTTSBC------
T ss_pred             CceEEEEEC-CCCE-EEEEeCCCeEEEEECCCCcEeeeecchhhhhh---------------hh----hhcccc-c----
Confidence            999999999 8775 78999999999999999887766642210000               00    000000 0    


Q ss_pred             cCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEee-cCCcEEEEec--CcCceeeee
Q 013274          271 ANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG-SDSRIRLWDV--ESGRNTLVN  347 (446)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs-~D~~i~lWd~--~~~~~~~~~  347 (446)
                                 ..               +. ......+...|.+++|+|++.+|++++ .|+.|++|++  .++. .+..
T Consensus       296 -----------~~---------------~~-~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~-~l~~  347 (450)
T 2vdu_B          296 -----------PR---------------FQ-NENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKG-DLAL  347 (450)
T ss_dssp             ------------------------------------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTT-CEEE
T ss_pred             -----------cc---------------cc-ccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCC-ceee
Confidence                       00               00 000012234689999999999999998 8999999999  4431 1122


Q ss_pred             eeEEEeecCCCeEEEEcCCCcEEEEeCC-------CceEEEEeec
Q 013274          348 FETVRLQTSKPIQLATTQDPAVVFVPCM-------TAVKAFDIWS  385 (446)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~d~~~  385 (446)
                      ...+... ..+..+++.++..++.....       ..+++|.+..
T Consensus       348 ~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~  391 (450)
T 2vdu_B          348 KQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL  391 (450)
T ss_dssp             EEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred             ccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence            2222222 45567788885433333321       2367777653

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.94  E-value=3.6e-24  Score=209.95  Aligned_cols=238  Identities=15%  Similarity=0.165  Sum_probs=186.1

Q ss_pred             cEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEec------CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCC
Q 013274          105 AISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM------PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA  178 (446)
Q Consensus       105 ~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~  178 (446)
                      .+.++.++| ++.++++++.|++|++||+.+++.+.....      .+.+..+++.+   +..++++++.|+.|++||++
T Consensus       124 ~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~s~~~d~~v~~~d~~  199 (433)
T 3bws_A          124 QPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE---HNELWVSQMQANAVHVFDLK  199 (433)
T ss_dssp             CBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG---GTEEEEEEGGGTEEEEEETT
T ss_pred             CceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcC---CCEEEEEECCCCEEEEEECC
Confidence            345677887 888899999999999999999887764332      23466677755   45689999999999999999


Q ss_pred             CCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCC
Q 013274          179 SGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQN  258 (446)
Q Consensus       179 ~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (446)
                      +++....+..|...+.+++|+|+++.++++++.|+.|++||++++.....+.                            
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~----------------------------  251 (433)
T 3bws_A          200 TLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD----------------------------  251 (433)
T ss_dssp             TCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC----------------------------
T ss_pred             CceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec----------------------------
Confidence            9999999999999999999999999776777789999999998764332210                            


Q ss_pred             CCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEee--------cC
Q 013274          259 SSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG--------SD  330 (446)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs--------~D  330 (446)
                                                                       +.+.+.+++|+|+|++|++++        .|
T Consensus       252 -------------------------------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~d  282 (433)
T 3bws_A          252 -------------------------------------------------KIGLPRGLLLSKDGKELYIAQFSASNQESGG  282 (433)
T ss_dssp             -------------------------------------------------CCSEEEEEEECTTSSEEEEEEEESCTTCSCC
T ss_pred             -------------------------------------------------CCCCceEEEEcCCCCEEEEEECCCCccccCC
Confidence                                                             112378899999999999888        58


Q ss_pred             CcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEe--CCCceEEEEeecCceEEEecccccceEEEEEcCCC
Q 013274          331 SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVP--CMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQD  408 (446)
Q Consensus       331 ~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~  408 (446)
                      +.|++||+.+++... .+    .....+..+++++++..+++.  ....+++||+.+++....+. |...+.+++|+||+
T Consensus       283 g~i~~~d~~~~~~~~-~~----~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg  356 (433)
T 3bws_A          283 GRLGIYSMDKEKLID-TI----GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDG  356 (433)
T ss_dssp             EEEEEEETTTTEEEE-EE----EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTS
T ss_pred             CeEEEEECCCCcEEe-ec----cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCC
Confidence            899999998874321 11    112245567888988655443  34689999999888887776 77889999999999


Q ss_pred             CEEEEeeC---------------CCcEEEeCCCCCC
Q 013274          409 QELYTGGN---------------DRQILVWCPSRHI  429 (446)
Q Consensus       409 ~~lvtgs~---------------D~~v~vW~~~~~~  429 (446)
                      ++|++++.               |+.|++|++.+..
T Consensus       357 ~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~  392 (433)
T 3bws_A          357 KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT  392 (433)
T ss_dssp             SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred             CEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence            99888776               5799999997654

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.5e-25  Score=235.36  Aligned_cols=212  Identities=18%  Similarity=0.302  Sum_probs=170.2

Q ss_pred             ccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCC--eeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEE
Q 013274           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT--RVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLC  175 (446)
Q Consensus        99 ~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vw  175 (446)
                      ..+|.+.|+++.++| ++++|++|+.|++|++||+..+  ..+..+. +.+.+.++.+++.. +..+|++|+.|+.|++|
T Consensus         5 l~gH~~~V~~l~~s~-dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~~~~l~s~s~Dg~I~vw   82 (753)
T 3jro_A            5 ANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-FGTILASCSYDGKVLIW   82 (753)
T ss_dssp             ---CCCCEEEECCCS-SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTT-SCSEEEEEETTSCEEEE
T ss_pred             cccCcceeEEEEECC-CCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCC-CCCEEEEEeCCCeEEEE
Confidence            368999999999887 7889999999999999999743  4454444 44568888888752 24589999999999999


Q ss_pred             eCCCCc--eeeeeeCCCCCeEEEEEecC--CCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeecc
Q 013274          176 DIASGA--ISQTLSGHRDGIMTVEWSTS--SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISK  251 (446)
Q Consensus       176 d~~~~~--~~~~l~~h~~~v~sv~~s~~--~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (446)
                      |++++.  ....+.+|...|.+++|+|+  ++ .+++|+.||+|++||+++......                       
T Consensus        83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~~~~~-----------------------  138 (753)
T 3jro_A           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSP-----------------------  138 (753)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSSCCCC-----------------------
T ss_pred             ECCCCcccccccccCCCCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCCCcce-----------------------
Confidence            999986  67788899999999999998  76 579999999999999976421000                       


Q ss_pred             ccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEcc------------
Q 013274          252 SLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE------------  319 (446)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~------------  319 (446)
                                                                         ....+|...|.+++|+|            
T Consensus       139 ---------------------------------------------------~~~~~~~~~v~~l~~~p~~~~~~~~~~~~  167 (753)
T 3jro_A          139 ---------------------------------------------------IIIDAHAIGVNSASWAPATIEEDGEHNGT  167 (753)
T ss_dssp             ---------------------------------------------------EEEECCSSCEEEEEECCCC---------C
T ss_pred             ---------------------------------------------------eEeecCCCceEEEEecCcccccccccccC
Confidence                                                               01135677899999999            


Q ss_pred             -CCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccc
Q 013274          320 -DGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEY  398 (446)
Q Consensus       320 -dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~  398 (446)
                       ++.+|++|+.||+|++||+.++....                                         .....+.+|.+.
T Consensus       168 ~d~~~l~sgs~dg~I~iwd~~~~~~~~-----------------------------------------~~~~~~~~h~~~  206 (753)
T 3jro_A          168 KESRKFVTGGADNLVKIWKYNSDAQTY-----------------------------------------VLESTLEGHSDW  206 (753)
T ss_dssp             GGGCCEEEEETTSCEEEEEEETTTTEE-----------------------------------------EEEEEECCCSSC
T ss_pred             CCCCEEEEEECCCeEEEEeccCCcccc-----------------------------------------eeeeeecCCCCc
Confidence             58999999999999999987653210                                         122456789999


Q ss_pred             eEEEEEcCC---CCEEEEeeCCCcEEEeCCCCC
Q 013274          399 VNCCCFSSQ---DQELYTGGNDRQILVWCPSRH  428 (446)
Q Consensus       399 v~~~~fSpd---~~~lvtgs~D~~v~vW~~~~~  428 (446)
                      |++++|+|+   +++|+||+.|++|++|++...
T Consensus       207 V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~  239 (753)
T 3jro_A          207 VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE  239 (753)
T ss_dssp             EEEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred             EEEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence            999999999   999999999999999998764

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.94  E-value=4.9e-24  Score=199.66  Aligned_cols=245  Identities=20%  Similarity=0.307  Sum_probs=181.3

Q ss_pred             eEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCC---ceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCcee
Q 013274          107 SSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPG---KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAIS  183 (446)
Q Consensus       107 ~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~  183 (446)
                      .++.|++ ++ +||+| .|++|+|||+++++++..+...+   .+.++++++.   ..++++|+.|+.|++||+++++.+
T Consensus        29 ~~l~WS~-~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~---~~~l~sgs~Dg~v~iw~~~~~~~~  102 (318)
T 4ggc_A           29 NLVDWSS-GN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE---GNYLAVGTSSAEVQLWDVQQQKRL  102 (318)
T ss_dssp             BCEEECT-TS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTT---SSEEEEEETTSEEEEEETTTTEEE
T ss_pred             eEEEECC-CC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCC---CCEEEEEECCCcEEEeecCCceeE
Confidence            4567875 43 77665 59999999999999988877543   4788888875   458999999999999999999999


Q ss_pred             eeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCC
Q 013274          184 QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKP  263 (446)
Q Consensus       184 ~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (446)
                      ..+.+|...+.++.+.+  . ++++++.++.+++|+........                                    
T Consensus       103 ~~~~~h~~~~~~~~~~~--~-~l~s~~~~~~~~~~~~~~~~~~~------------------------------------  143 (318)
T 4ggc_A          103 RNMTSHSARVGSLSWNS--Y-ILSSGSRSGHIHHHDVRVAEHHV------------------------------------  143 (318)
T ss_dssp             EEEECCSSCEEEEEEET--T-EEEEEETTSEEEEEETTSSSCEE------------------------------------
T ss_pred             EEecCccceEEEeecCC--C-EEEEEecCCceEeeecCCCceeE------------------------------------
Confidence            99999999998877653  4 57999999999999976432100                                    


Q ss_pred             CCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCce
Q 013274          264 RAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRN  343 (446)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~  343 (446)
                                                             ....+|...+..+.+++++.+|++++.|++|++||+.+++.
T Consensus       144 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  184 (318)
T 4ggc_A          144 ---------------------------------------ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG  184 (318)
T ss_dssp             ---------------------------------------EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTT
T ss_pred             ---------------------------------------EEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcc
Confidence                                                   01235777899999999999999999999999999988653


Q ss_pred             eeeeeeEEEeecCCCeEEEEcCCC-cEEEEeC---CCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEee--CC
Q 013274          344 TLVNFETVRLQTSKPIQLATTQDP-AVVFVPC---MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGG--ND  417 (446)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs--~D  417 (446)
                      .................+...++. ..+..+.   ...+++|+......... ..|...+.++.|+|+++.+++++  .|
T Consensus       185 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~sg~~d  263 (318)
T 4ggc_A          185 GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA-VDAHSQVCSILWSPHYKELISGHGFAQ  263 (318)
T ss_dssp             BSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE-EECSSCEEEEEEETTTTEEEEEECTTT
T ss_pred             cccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc-ccceeeeeeeeecccccceEEEEEcCC
Confidence            322122222222333445566554 3443332   24689999877766554 45777899999999999988654  79


Q ss_pred             CcEEEeCCCCCCCCCcCCC
Q 013274          418 RQILVWCPSRHISDGVDAG  436 (446)
Q Consensus       418 ~~v~vW~~~~~~~~~~~~~  436 (446)
                      ++|+||++.+......+.|
T Consensus       264 ~~i~iwd~~~~~~~~~l~g  282 (318)
T 4ggc_A          264 NQLVIWKYPTMAKVAELKG  282 (318)
T ss_dssp             CCEEEEETTTCCEEEEECC
T ss_pred             CEEEEEECCCCcEEEEEcC
Confidence            9999999987655444433

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.93  E-value=4.2e-25  Score=204.48  Aligned_cols=216  Identities=11%  Similarity=0.112  Sum_probs=138.4

Q ss_pred             CccceeEEEeecCC---CCEEEEeeCCCcEEEEEcccCcCCCC--CCccccccceEEec-c---ccccCccccEeEEEEe
Q 013274           42 HKGSINSLQVDLTE---ERYLLSGASDSSVAVYDVQRATDYEG--GGHIAKHRSVFVVD-K---QHEHGHKYAISSAIWY  112 (446)
Q Consensus        42 H~~~v~~l~~s~~~---~~~l~s~s~Dg~i~lWd~~~~~~~~~--~~~~~~~~~~~~~~-~---~~~~gh~~~V~~~~~~  112 (446)
                      |.+.|++|+|+|+|   +.++++++.+  +++|++.++.....  .++-...+.+.+.. .   ....+|...+..+.|+
T Consensus       110 ~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs  187 (356)
T 2w18_A          110 EIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFA  187 (356)
T ss_dssp             SEEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEE
T ss_pred             cccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEee
Confidence            56789999998631   6677776642  44444433221000  00000000000000 0   0123677777777776


Q ss_pred             ec--CCcEEEEEeCCCeEEEEECCCCeeeEEEecCC----ceEEeeeccCCCC---------ceEEEEeeCCCcEEEEeC
Q 013274          113 PV--DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPG----KVYRTAMSPLAAS---------HMLIAAGTEDVQVRLCDI  177 (446)
Q Consensus       113 ~~--~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~----~~~~~~~~~~~~~---------~~~lasgs~d~~v~vwd~  177 (446)
                      +.  ++.+|+|+|.|++|||||++++++++++....    .+..++|+|++.-         ...+++|+.|++|++||.
T Consensus       188 ~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~  267 (356)
T 2w18_A          188 EVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINP  267 (356)
T ss_dssp             EEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEET
T ss_pred             ccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEEC
Confidence            63  56899999999999999999999998886321    2445567764320         012478899999999999


Q ss_pred             CCCceeeee-----eCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccc
Q 013274          178 ASGAISQTL-----SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKS  252 (446)
Q Consensus       178 ~~~~~~~~l-----~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (446)
                      ++++.+..+     .+|...+.+..++  +. ++++++.|++|+|||+++++++..+.                      
T Consensus       268 ~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~-~lASgS~DgTIkIWDl~tGk~l~tL~----------------------  322 (356)
T 2w18_A          268 KTTLSVGVMLYCLPPGQAGRFLEGDVK--DH-CAAAILTSGTIAIWDLLLGQCTALLP----------------------  322 (356)
T ss_dssp             TTTEEEEEEEECCCTTCCCCEEEEEEE--TT-EEEEEETTSCEEEEETTTCSEEEEEC----------------------
T ss_pred             CCCEEEEEEEeeccCCCcceeEccccC--CC-EEEEEcCCCcEEEEECCCCcEEEEec----------------------
Confidence            999877655     3787776665554  44 57999999999999999887765542                      


Q ss_pred             cccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccC-eEEEEEccCCCEEEEeecCC
Q 013274          253 LSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGA-VTGLKVTEDGMYLLSAGSDS  331 (446)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~fs~dg~~l~sgs~D~  331 (446)
                                                                            +|... +.+++|+|||++|+||+.|+
T Consensus       323 ------------------------------------------------------gH~~~vvs~vafSPDG~~LaSGS~D~  348 (356)
T 2w18_A          323 ------------------------------------------------------PVSDQHWSFVKWSGTDSHLLAGQKDG  348 (356)
T ss_dssp             ------------------------------------------------------CC--CCCCEEEECSSSSEEEEECTTS
T ss_pred             ------------------------------------------------------CCCCCeEEEEEECCCCCEEEEEECCC
Confidence                                                                  34433 44689999999999999999


Q ss_pred             cEEEEec
Q 013274          332 RIRLWDV  338 (446)
Q Consensus       332 ~i~lWd~  338 (446)
                      +|||||+
T Consensus       349 TIklWd~  355 (356)
T 2w18_A          349 NIFVYHY  355 (356)
T ss_dssp             CEEEEEE
T ss_pred             cEEEecC
Confidence            9999985

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=1.1e-24  Score=212.75  Aligned_cols=289  Identities=10%  Similarity=0.049  Sum_probs=202.1

Q ss_pred             CccceeEEEeecCCCCEEEEee----CCC----cEEEEEc--ccCcCCCCCCccccccceEEeccccccCccccEeEEEE
Q 013274           42 HKGSINSLQVDLTEERYLLSGA----SDS----SVAVYDV--QRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIW  111 (446)
Q Consensus        42 H~~~v~~l~~s~~~~~~l~s~s----~Dg----~i~lWd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~  111 (446)
                      +.+.|+...|++.+.+++++|+    .||    +|+|||+  .++....               .....+|...+..+.+
T Consensus        61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~---------------~~~~~~~~~~~~~~~~  125 (415)
T 2hqs_A           61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLA---------------QNSYKVNKQWLRYAGH  125 (415)
T ss_dssp             SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEE---------------EEEEEECGGGHHHHHH
T ss_pred             cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEe---------------eeEEEcChhHHHHHHH
Confidence            3457888888877667888887    568    9999999  7654210               0011233333332222


Q ss_pred             ee-------------cCCcEEEEEeCC------CeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCC--
Q 013274          112 YP-------------VDTGLFVTGSYD------HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV--  170 (446)
Q Consensus       112 ~~-------------~~~~~l~s~s~D------~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~--  170 (446)
                      .+             ..+..++.++.+      ++|++||++.+.........+.+..++++|++   ..|++++.++  
T Consensus       126 ~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg---~~la~~s~~~~~  202 (415)
T 2hqs_A          126 TASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDG---SKLAYVTFESGR  202 (415)
T ss_dssp             HHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTS---SEEEEEECTTSS
T ss_pred             HHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCC---CEEEEEEecCCC
Confidence            21             014456655554      79999999865544333456678888998854   4778887775  


Q ss_pred             -cEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCc--EEEEEccCCceeEEeecccccccCCCcccccce
Q 013274          171 -QVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGA--IRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKV  247 (446)
Q Consensus       171 -~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~--I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (446)
                       .|++||+++++.. .+..|.+.+.+++|+|+++.++++++.|+.  |++||++++.+. .                   
T Consensus       203 ~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~-------------------  261 (415)
T 2hqs_A          203 SALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-Q-------------------  261 (415)
T ss_dssp             CEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-E-------------------
T ss_pred             cEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-e-------------------
Confidence             9999999998764 577888999999999999976557777665  999998764321 0                   


Q ss_pred             eeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEe
Q 013274          248 SISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSA  327 (446)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sg  327 (446)
                                                                               ...|.+.+.+++|+|||++|+.+
T Consensus       262 ---------------------------------------------------------l~~~~~~~~~~~~spdg~~l~~~  284 (415)
T 2hqs_A          262 ---------------------------------------------------------VTDGRSNNTEPTWFPDSQNLAFT  284 (415)
T ss_dssp             ---------------------------------------------------------CCCCSSCEEEEEECTTSSEEEEE
T ss_pred             ---------------------------------------------------------CcCCCCcccceEECCCCCEEEEE
Confidence                                                                     11344568899999999999888


Q ss_pred             ec-CC--cEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC----CceEEEEeecCceEEEecccccceE
Q 013274          328 GS-DS--RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM----TAVKAFDIWSGKTCLTFRGHYEYVN  400 (446)
Q Consensus       328 s~-D~--~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~d~~~~~~~~~l~gH~~~v~  400 (446)
                      +. ++  .|.+||+.+++....     .........++++|++..++....    ..+.+||+.+++. ..+..|. .+.
T Consensus       285 s~~~g~~~i~~~d~~~~~~~~l-----~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~  357 (415)
T 2hqs_A          285 SDQAGRPQVYKVNINGGAPQRI-----TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDE  357 (415)
T ss_dssp             ECTTSSCEEEEEETTSSCCEEC-----CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCE
T ss_pred             ECCCCCcEEEEEECCCCCEEEE-----ecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcC
Confidence            76 44  677779887653211     111223446788999988776543    4789999988776 4566665 899


Q ss_pred             EEEEcCCCCEEEEeeCCC---cEEEeCCCCCCCCCc
Q 013274          401 CCCFSSQDQELYTGGNDR---QILVWCPSRHISDGV  433 (446)
Q Consensus       401 ~~~fSpd~~~lvtgs~D~---~v~vW~~~~~~~~~~  433 (446)
                      +++|+|||++|++++.|+   .|.+|++++.....+
T Consensus       358 ~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l  393 (415)
T 2hqs_A          358 TPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARL  393 (415)
T ss_dssp             EEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEEC
T ss_pred             CeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEe
Confidence            999999999999998887   799999886654433

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.93  E-value=7.6e-24  Score=213.54  Aligned_cols=283  Identities=11%  Similarity=0.064  Sum_probs=205.9

Q ss_pred             eecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeEEE
Q 013274           51 VDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKV  130 (446)
Q Consensus        51 ~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~i  130 (446)
                      |+| ++.++++++.|++|.+||..+++..            ..+    ..+|.  +..+.++| ++++|++++.|++|++
T Consensus       145 ~~p-~~~~~vs~~~d~~V~v~D~~t~~~~------------~~i----~~g~~--~~~v~~sp-dg~~l~v~~~d~~V~v  204 (543)
T 1nir_A          145 LDL-PNLFSVTLRDAGQIALVDGDSKKIV------------KVI----DTGYA--VHISRMSA-SGRYLLVIGRDARIDM  204 (543)
T ss_dssp             CCG-GGEEEEEEGGGTEEEEEETTTCCEE------------EEE----ECSTT--EEEEEECT-TSCEEEEEETTSEEEE
T ss_pred             cCC-CCEEEEEEcCCCeEEEEECCCceEE------------EEE----ecCcc--cceEEECC-CCCEEEEECCCCeEEE
Confidence            776 5789999999999999998876421            001    01333  66666776 8999999999999999


Q ss_pred             EEC--CCCeeeEEEecCCceEEeeeccCCC-CceEEEEee-CCCcEEEEeCCCCceeeeeeCC----------CC-CeEE
Q 013274          131 WDT--NCTRVVMNFKMPGKVYRTAMSPLAA-SHMLIAAGT-EDVQVRLCDIASGAISQTLSGH----------RD-GIMT  195 (446)
Q Consensus       131 Wd~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lasgs-~d~~v~vwd~~~~~~~~~l~~h----------~~-~v~s  195 (446)
                      ||+  .+++++..+........+++++... +..++++++ .++.|.+||..+++++.++..+          .+ .+.+
T Consensus       205 ~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~  284 (543)
T 1nir_A          205 IDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAA  284 (543)
T ss_dssp             EETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEE
T ss_pred             EECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEE
Confidence            999  8888888888766678888887211 233556665 5899999999999988887652          23 7889


Q ss_pred             EEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCc
Q 013274          196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNG  275 (446)
Q Consensus       196 v~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (446)
                      +.++|+++.++++...+++|.+||+.+.+++...                                              
T Consensus       285 i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~----------------------------------------------  318 (543)
T 1nir_A          285 IIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVT----------------------------------------------  318 (543)
T ss_dssp             EEECSSSSEEEEEETTTTEEEEEECTTSSSCEEE----------------------------------------------
T ss_pred             EEECCCCCEEEEEECCCCeEEEEEecCCCcceeE----------------------------------------------
Confidence            9999988888889999999999998764322100                                              


Q ss_pred             eeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEe-ecCCcEEEEecCcCceeeeeeeEEE-e
Q 013274          276 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSA-GSDSRIRLWDVESGRNTLVNFETVR-L  353 (446)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sg-s~D~~i~lWd~~~~~~~~~~~~~~~-~  353 (446)
                                                   ...+...+..++|+|+|++|+++ ..+++|++||+.+++... .+.... .
T Consensus       319 -----------------------------~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~-~i~~g~~p  368 (543)
T 1nir_A          319 -----------------------------SIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSA-LVDVGKTP  368 (543)
T ss_dssp             -----------------------------EEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE-EEECSSSB
T ss_pred             -----------------------------EeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEE-eeccCCCC
Confidence                                         00112235567899999976654 568999999999875321 111100 0


Q ss_pred             ecCCCeEEEEcCC-CcEEEEeC--CCceEEEEeec-------CceEEEecccccceEEEEEcCCCCEEEEee-------C
Q 013274          354 QTSKPIQLATTQD-PAVVFVPC--MTAVKAFDIWS-------GKTCLTFRGHYEYVNCCCFSSQDQELYTGG-------N  416 (446)
Q Consensus       354 ~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~d~~~-------~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs-------~  416 (446)
                      +......+ +.|+ +.+++++.  ...+.+||+.+       ++.+.++.+|.+.+..++||||+++|++++       .
T Consensus       369 h~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~  447 (543)
T 1nir_A          369 HPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARI  447 (543)
T ss_dssp             CCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHH
T ss_pred             CCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCccc
Confidence            11122222 4565 44444443  36899999988       889999999999999999999999999987       3


Q ss_pred             CCcEEEeCCCCCCC
Q 013274          417 DRQILVWCPSRHIS  430 (446)
Q Consensus       417 D~~v~vW~~~~~~~  430 (446)
                      +++|.||+..+...
T Consensus       448 ~~~v~v~d~~~~~~  461 (543)
T 1nir_A          448 SQSVAVFDLKNLDA  461 (543)
T ss_dssp             HTCEEEEETTCTTS
T ss_pred             CceEEEEECCCCCC
Confidence            78999999986653

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.93  E-value=8e-23  Score=206.08  Aligned_cols=296  Identities=14%  Similarity=0.149  Sum_probs=214.2

Q ss_pred             eeEEEeecCCCCEEEEeeCCCcEEEEEc--ccCcCCCCCCccccccceEEeccccccCccccEeEEEEeec---CCcEEE
Q 013274           46 INSLQVDLTEERYLLSGASDSSVAVYDV--QRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV---DTGLFV  120 (446)
Q Consensus        46 v~~l~~s~~~~~~l~s~s~Dg~i~lWd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~---~~~~l~  120 (446)
                      +..++|+| ++++|++++.|++|++||+  .+++..            ..+      .+...+..+.++|.   ++++++
T Consensus       181 ~~~v~~sp-dg~~l~v~~~d~~V~v~D~~~~t~~~~------------~~i------~~g~~p~~va~sp~~~~dg~~l~  241 (543)
T 1nir_A          181 VHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKV------------AEI------KIGIEARSVESSKFKGYEDRYTI  241 (543)
T ss_dssp             EEEEEECT-TSCEEEEEETTSEEEEEETTSSSCEEE------------EEE------ECCSEEEEEEECCSTTCTTTEEE
T ss_pred             cceEEECC-CCCEEEEECCCCeEEEEECcCCCCcEE------------EEE------ecCCCcceEEeCCCcCCCCCEEE
Confidence            88999997 6889999999999999999  543210            001      12234566777651   788888


Q ss_pred             EEeC-CCeEEEEECCCCeeeEEEecCC------------ceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceee--e
Q 013274          121 TGSY-DHYVKVWDTNCTRVVMNFKMPG------------KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ--T  185 (446)
Q Consensus       121 s~s~-D~~i~iWd~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~--~  185 (446)
                      ++++ |++|.+||..+++++..+...+            .+..+.+++..  ..++++...++.|.+||+.+.+.+.  .
T Consensus       242 v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~--~~~~vs~~~~g~i~vvd~~~~~~l~~~~  319 (543)
T 1nir_A          242 AGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEH--PEFIVNVKETGKVLLVNYKDIDNLTVTS  319 (543)
T ss_dssp             EEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSS--SEEEEEETTTTEEEEEECTTSSSCEEEE
T ss_pred             EEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCC--CEEEEEECCCCeEEEEEecCCCcceeEE
Confidence            8874 8999999999999888776432            35566777653  3578888899999999998876543  4


Q ss_pred             eeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCC
Q 013274          186 LSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRA  265 (446)
Q Consensus       186 l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (446)
                      + .+...+..+.|+|+++++++++..+++|.+||+.++++...+....                                
T Consensus       320 i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~--------------------------------  366 (543)
T 1nir_A          320 I-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK--------------------------------  366 (543)
T ss_dssp             E-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS--------------------------------
T ss_pred             e-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCC--------------------------------
Confidence            4 3566788999999999877777789999999999887665542100                                


Q ss_pred             ccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccC-CCEEEEee-cCCcEEEEecCcCce
Q 013274          266 PQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED-GMYLLSAG-SDSRIRLWDVESGRN  343 (446)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~d-g~~l~sgs-~D~~i~lWd~~~~~~  343 (446)
                                                              ..|.+....+ ++|+ |..++|+. .|++|.+||+.+...
T Consensus       367 ----------------------------------------~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~  405 (543)
T 1nir_A          367 ----------------------------------------TPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNH  405 (543)
T ss_dssp             ----------------------------------------SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTC
T ss_pred             ----------------------------------------CCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCC
Confidence                                                    1233323333 4676 66777775 689999999987211


Q ss_pred             ---eeeeeeEEEeecCCCeEEEEcCCCcEEEEeC--------CCceEEEEeecCceE-EEe--------cccccceEEEE
Q 013274          344 ---TLVNFETVRLQTSKPIQLATTQDPAVVFVPC--------MTAVKAFDIWSGKTC-LTF--------RGHYEYVNCCC  403 (446)
Q Consensus       344 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~d~~~~~~~-~~l--------~gH~~~v~~~~  403 (446)
                         ....+..+..+......++++|++..+++..        ...+.+||+.+++.. ..+        ..|...+..+.
T Consensus       406 ~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  485 (543)
T 1nir_A          406 PQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPE  485 (543)
T ss_dssp             TTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEE
T ss_pred             chhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEecc
Confidence               0111233333334556788999999999976        348999999998876 443        46788999999


Q ss_pred             EcCCCCEEEEe-----eCCCcEEEeCCCCCCCCCcCCC
Q 013274          404 FSSQDQELYTG-----GNDRQILVWCPSRHISDGVDAG  436 (446)
Q Consensus       404 fSpd~~~lvtg-----s~D~~v~vW~~~~~~~~~~~~~  436 (446)
                      |+|||+.|+.+     +.|++|.|||..+.++..++.+
T Consensus       486 ~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~  523 (543)
T 1nir_A          486 YNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKD  523 (543)
T ss_dssp             ECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred             CCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecC
Confidence            99999998854     3489999999998766555543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.91  E-value=4.2e-22  Score=194.59  Aligned_cols=264  Identities=15%  Similarity=0.116  Sum_probs=189.1

Q ss_pred             eCCCccceeEEEeecC-------------CCCEEEEeeCC------CcEEEEEcccCcCCCCCCccccccceEEeccccc
Q 013274           39 VSPHKGSINSLQVDLT-------------EERYLLSGASD------SSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHE   99 (446)
Q Consensus        39 ~~~H~~~v~~l~~s~~-------------~~~~l~s~s~D------g~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (446)
                      +.+|...+..+++++.             .+..|+.++.+      ++|++||++....                  ...
T Consensus       113 ~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~------------------~~l  174 (415)
T 2hqs_A          113 YKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ------------------FVV  174 (415)
T ss_dssp             EEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSC------------------EEE
T ss_pred             EEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCC------------------EEE
Confidence            5677777777776531             14456666654      7999999864221                  112


Q ss_pred             cCccccEeEEEEeecCCcEEEEEeCCC---eEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCc--EEE
Q 013274          100 HGHKYAISSAIWYPVDTGLFVTGSYDH---YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQ--VRL  174 (446)
Q Consensus       100 ~gh~~~V~~~~~~~~~~~~l~s~s~D~---~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~--v~v  174 (446)
                      .+|...|.++.|+| ++++|++++.|+   +|++||+.+++........+.+..++++|++.  .++++++.++.  |++
T Consensus       175 ~~~~~~v~~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~--~la~~~~~~g~~~i~~  251 (415)
T 2hqs_A          175 HRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS--KLAFALSKTGSLNLYV  251 (415)
T ss_dssp             EEESSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSS--EEEEEECTTSSCEEEE
T ss_pred             eCCCCcceeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCC--EEEEEEecCCCceEEE
Confidence            36778899999987 888999999885   99999999988765555566778888988642  34446666554  999


Q ss_pred             EeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCC--cEEEEEccCCceeEEeecccccccCCCcccccceeeccc
Q 013274          175 CDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDG--AIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKS  252 (446)
Q Consensus       175 wd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg--~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (446)
                      ||+++++. ..+..|...+.+++|+|+++++++++..++  .|.+||+.++....                         
T Consensus       252 ~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~-------------------------  305 (415)
T 2hqs_A          252 MDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-------------------------  305 (415)
T ss_dssp             EETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-------------------------
T ss_pred             EECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEE-------------------------
Confidence            99998875 567789999999999999987543443456  56666765432100                         


Q ss_pred             cccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecC--
Q 013274          253 LSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD--  330 (446)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D--  330 (446)
                                                                          ...|...+.+++|+|||++|++++.+  
T Consensus       306 ----------------------------------------------------l~~~~~~~~~~~~spdG~~l~~~~~~~g  333 (415)
T 2hqs_A          306 ----------------------------------------------------ITWEGSQNQDADVSSDGKFMVMVSSNGG  333 (415)
T ss_dssp             ----------------------------------------------------CCCSSSEEEEEEECTTSSEEEEEEECSS
T ss_pred             ----------------------------------------------------EecCCCcccCeEECCCCCEEEEEECcCC
Confidence                                                                01123357889999999999988875  


Q ss_pred             -CcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-C---ceEEEEeecCceEEEecccccceEEEEEc
Q 013274          331 -SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-T---AVKAFDIWSGKTCLTFRGHYEYVNCCCFS  405 (446)
Q Consensus       331 -~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~d~~~~~~~~~l~gH~~~v~~~~fS  405 (446)
                       ..|++||+.+++...  +   .. ......++++|++..++.++. .   .+.+||+. ++....+.+|.+.|.+++||
T Consensus       334 ~~~i~~~d~~~~~~~~--l---~~-~~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~  406 (415)
T 2hqs_A          334 QQHIAKQDLATGGVQV--L---SS-TFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWS  406 (415)
T ss_dssp             CEEEEEEETTTCCEEE--C---CC-SSSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEEC
T ss_pred             ceEEEEEECCCCCEEE--e---cC-CCCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccc
Confidence             689999999875321  1   11 124567889999987776543 2   57788875 66678999999999999999


Q ss_pred             CCC
Q 013274          406 SQD  408 (446)
Q Consensus       406 pd~  408 (446)
                      |--
T Consensus       407 ~~~  409 (415)
T 2hqs_A          407 PYL  409 (415)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            964

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.90  E-value=6.9e-21  Score=179.60  Aligned_cols=285  Identities=12%  Similarity=0.116  Sum_probs=189.9

Q ss_pred             EeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEe-CCCeE
Q 013274           50 QVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS-YDHYV  128 (446)
Q Consensus        50 ~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s-~D~~i  128 (446)
                      .|..+.+..+++++.+++|++||+++++...            ..     ..+...+ .+.++| +++++++++ .++.|
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~------------~~-----~~~~~~~-~~~~s~-dg~~l~~~~~~~~~i   64 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILN------------QI-----TLGYDFV-DTAITS-DCSNVVVTSDFCQTL   64 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEE------------EE-----ECCCCEE-EEEECS-SSCEEEEEESTTCEE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceee------------eE-----EccCCcc-eEEEcC-CCCEEEEEeCCCCeE
Confidence            3555556678999999999999998764210            00     1223334 667776 676555554 48999


Q ss_pred             EEEECCCCee-eEEEecCCceEE-eeeccCCCCceEEEEeeCC-C--cEEEEeCCCCceeeeeeCCCCCeEEEEEecCCC
Q 013274          129 KVWDTNCTRV-VMNFKMPGKVYR-TAMSPLAASHMLIAAGTED-V--QVRLCDIASGAISQTLSGHRDGIMTVEWSTSSE  203 (446)
Q Consensus       129 ~iWd~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~lasgs~d-~--~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~  203 (446)
                      .+||+.+++. ...+........ ++++++.   .+++++..+ +  .|++||+++++.+..+..+ ....+++|+|+++
T Consensus        65 ~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg---~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~  140 (331)
T 3u4y_A           65 VQIETQLEPPKVVAIQEGQSSMADVDITPDD---QFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGN  140 (331)
T ss_dssp             EEEECSSSSCEEEEEEECSSCCCCEEECTTS---SEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSS
T ss_pred             EEEECCCCceeEEecccCCCCccceEECCCC---CEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCC
Confidence            9999998887 665555444444 7777743   355555444 3  8999999999888777654 4468999999998


Q ss_pred             eEEEEeeCCCc-EEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccc
Q 013274          204 WILVTGGCDGA-IRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVG  282 (446)
Q Consensus       204 ~~l~S~s~Dg~-I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (446)
                      +++++...++. |.+|++...+.+....  .                                                 
T Consensus       141 ~l~~~~~~~~~~i~~~~~~~~g~~~~~~--~-------------------------------------------------  169 (331)
T 3u4y_A          141 GLILIDRSSANTVRRFKIDADGVLFDTG--Q-------------------------------------------------  169 (331)
T ss_dssp             CEEEEEETTTTEEEEEEECTTCCEEEEE--E-------------------------------------------------
T ss_pred             EEEEEecCCCceEEEEEECCCCcEeecC--C-------------------------------------------------
Confidence            77777777788 9999987533211100  0                                                 


Q ss_pred             eeecCCccccccCCCcccccccccccccCeEEEEEccCCCEE-EEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEE
Q 013274          283 RIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL-LSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQL  361 (446)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l-~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~  361 (446)
                      .                     ...+......++|+|||++| +++..+++|++||+.+++.. .....+. ....+..+
T Consensus       170 ~---------------------~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~-~~~~~~~-~~~~~~~~  226 (331)
T 3u4y_A          170 E---------------------FISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI-TLLNAVG-TNNLPGTI  226 (331)
T ss_dssp             E---------------------EECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC-EEEEEEE-CSSCCCCE
T ss_pred             c---------------------cccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc-ceeeecc-CCCCCceE
Confidence            0                     00011236789999999965 55567899999999887541 0011111 13455678


Q ss_pred             EEcCCCcEEEEeCC--CceEEEEeecCce--EEEeccc----ccc---eEEEEEcCCCCEEE-EeeCCCcEEEeCCCCCC
Q 013274          362 ATTQDPAVVFVPCM--TAVKAFDIWSGKT--CLTFRGH----YEY---VNCCCFSSQDQELY-TGGNDRQILVWCPSRHI  429 (446)
Q Consensus       362 ~~~~~~~~~~~~~~--~~~~~~d~~~~~~--~~~l~gH----~~~---v~~~~fSpd~~~lv-tgs~D~~v~vW~~~~~~  429 (446)
                      +++|++..+++...  ..+.+||+.+++.  +..+..+    ...   +++++|+||+++|+ +++.++.|.||++....
T Consensus       227 ~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          227 VVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             EECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred             EECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence            99999997777643  4688999988876  4444333    222   35689999999886 45556799999998765


Q ss_pred             CC
Q 013274          430 SD  431 (446)
Q Consensus       430 ~~  431 (446)
                      ..
T Consensus       307 ~~  308 (331)
T 3u4y_A          307 VG  308 (331)
T ss_dssp             EE
T ss_pred             cc
Confidence            43

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.88  E-value=9.1e-21  Score=179.17  Aligned_cols=278  Identities=11%  Similarity=0.163  Sum_probs=179.2

Q ss_pred             CEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCC-CeEEEEECC-
Q 013274           57 RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYD-HYVKVWDTN-  134 (446)
Q Consensus        57 ~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D-~~i~iWd~~-  134 (446)
                      .++++++.|++|++||++.....         ..+..      ..|...+.++.++| ++++|++++.+ +.|++|+++ 
T Consensus         6 ~l~~~~~~~~~v~~~~~~~~~~~---------~~~~~------~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~~~~~~~   69 (343)
T 1ri6_A            6 TVYIASPESQQIHVWNLNHEGAL---------TLTQV------VDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAP   69 (343)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCE---------EEEEE------EECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECT
T ss_pred             EEEEeCCCCCeEEEEEECCCCcE---------EEeee------EecCCCCceEEECC-CCCEEEEeecCCCeEEEEEecC
Confidence            45566688999999998531100         00100      13445566777876 78888888876 999999997 


Q ss_pred             -CCe--eeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCC---CceeeeeeCCCCCeEEEEEecCCCeEEEE
Q 013274          135 -CTR--VVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS---GAISQTLSGHRDGIMTVEWSTSSEWILVT  208 (446)
Q Consensus       135 -~~~--~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~---~~~~~~l~~h~~~v~sv~~s~~~~~~l~S  208 (446)
                       +++  .+..+...+.+..+++++..  ..+++++..++.|.+||+++   ......+..+ ..+.+++|+|++++++++
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~  146 (343)
T 1ri6_A           70 DDGALTFAAESALPGSLTHISTDHQG--QFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVP  146 (343)
T ss_dssp             TTCCEEEEEEEECSSCCSEEEECTTS--SEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEE
T ss_pred             CCCceeeccccccCCCCcEEEEcCCC--CEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEe
Confidence             554  33445545566677787753  23445555688999999943   3444555544 458899999999876555


Q ss_pred             eeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCC
Q 013274          209 GGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKG  288 (446)
Q Consensus       209 ~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (446)
                      +..|+.|++||+.+...+......                                                  ..    
T Consensus       147 ~~~~~~v~~~d~~~~~~~~~~~~~--------------------------------------------------~~----  172 (343)
T 1ri6_A          147 ALKQDRICLFTVSDDGHLVAQDPA--------------------------------------------------EV----  172 (343)
T ss_dssp             EGGGTEEEEEEECTTSCEEEEEEE--------------------------------------------------EE----
T ss_pred             cCCCCEEEEEEecCCCceeeeccc--------------------------------------------------cc----
Confidence            558999999999762211110000                                                  00    


Q ss_pred             ccccccCCCcccccccccccccCeEEEEEccCCCEEE-EeecCCcEEEEecCc--CceeeeeeeEEE-eec-----CCCe
Q 013274          289 SVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLL-SAGSDSRIRLWDVES--GRNTLVNFETVR-LQT-----SKPI  359 (446)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~-sgs~D~~i~lWd~~~--~~~~~~~~~~~~-~~~-----~~~~  359 (446)
                                      .......+..++|+|+|++|+ ++..+++|++||+..  ++...  ..... ...     ..+.
T Consensus       173 ----------------~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~  234 (343)
T 1ri6_A          173 ----------------TTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIEC--VQTLDMMPENFSDTRWAA  234 (343)
T ss_dssp             ----------------ECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEE--EEEEECSCTTCCSCCCEE
T ss_pred             ----------------ccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEE--EeeccccCccccccCCcc
Confidence                            000112467899999999765 445899999999954  32211  11111 001     1233


Q ss_pred             EEEEcCCCcEEEEeC--CCceEEEEee--cC--ceEEEecccccceEEEEEcCCCCEEEEee-CCCcEEEeCCC
Q 013274          360 QLATTQDPAVVFVPC--MTAVKAFDIW--SG--KTCLTFRGHYEYVNCCCFSSQDQELYTGG-NDRQILVWCPS  426 (446)
Q Consensus       360 ~~~~~~~~~~~~~~~--~~~~~~~d~~--~~--~~~~~l~gH~~~v~~~~fSpd~~~lvtgs-~D~~v~vW~~~  426 (446)
                      .+++++++..+++..  ...+.+|++.  ++  +....+..+.. +.+++|+||+++|++++ .|+.|.+|+++
T Consensus       235 ~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          235 DIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             ceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            588999988776543  4679999997  33  34455665555 89999999999888777 68999999443

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.88  E-value=9.6e-21  Score=198.63  Aligned_cols=324  Identities=11%  Similarity=0.070  Sum_probs=191.4

Q ss_pred             ccceeEEEeecCCCCEEEEeeC-CC-----cEEEEEcccCcCCCCCCccccccc-----eEEecccc---c--cCccccE
Q 013274           43 KGSINSLQVDLTEERYLLSGAS-DS-----SVAVYDVQRATDYEGGGHIAKHRS-----VFVVDKQH---E--HGHKYAI  106 (446)
Q Consensus        43 ~~~v~~l~~s~~~~~~l~s~s~-Dg-----~i~lWd~~~~~~~~~~~~~~~~~~-----~~~~~~~~---~--~gh~~~V  106 (446)
                      ...|++++||| +|++|++++. |+     +|++||++++.....   +..+..     .+......   .  ......|
T Consensus        36 ~~~~~~~~~Sp-dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  111 (741)
T 2ecf_A           36 GPTLMKPKVAP-DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLL---VDSKVVLPGTETLSDEEKARRERQRIAAMTGI  111 (741)
T ss_dssp             CCCCEEEEECT-TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEE---ECGGGTC--------------------CCEES
T ss_pred             CCCCCCceEec-CCCEEEEEeccCCCCcccEEEEEECCCCceeEc---cchhhcccccccccchhhhhhhhhhhccccCc
Confidence            35689999997 6889999998 88     899999987642100   000000     00000000   0  0000336


Q ss_pred             eEEEEeecCCcEEEEEeCCCeEEEEECCCC---eeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCcee
Q 013274          107 SSAIWYPVDTGLFVTGSYDHYVKVWDTNCT---RVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAIS  183 (446)
Q Consensus       107 ~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~  183 (446)
                      .++.|+| |+++|++++. ++|.+||+.++   .........+.+..++++|++   ..|++++ ++.|++||+.+++..
T Consensus       112 ~~~~~Sp-Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG---~~la~~~-~~~i~~~d~~~g~~~  185 (741)
T 2ecf_A          112 VDYQWSP-DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKG---GFVSFIR-GRNLWVIDLASGRQM  185 (741)
T ss_dssp             CCCEECT-TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTS---SEEEEEE-TTEEEEEETTTTEEE
T ss_pred             ceeEECC-CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCC---CEEEEEe-CCcEEEEecCCCCEE
Confidence            6777876 8899998887 89999999987   544333344567788888854   4677766 568999999998766


Q ss_pred             eeeeCCCCC----------------eEEEEEecCCCeEEEEeeCC-CcEEEEEccCCceeEEeecccccccCCCcccccc
Q 013274          184 QTLSGHRDG----------------IMTVEWSTSSEWILVTGGCD-GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRK  246 (446)
Q Consensus       184 ~~l~~h~~~----------------v~sv~~s~~~~~~l~S~s~D-g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (446)
                      .....+...                +.++.|+|+++++ ++++.| +.+..|+...      .......          .
T Consensus       186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l-~~~~~d~~~~~~~~~~~------~~p~~~~----------~  248 (741)
T 2ecf_A          186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAI-AYARIDESPVPVQKRYE------VYADRTD----------V  248 (741)
T ss_dssp             ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCE-EEEEEECTTSCEEEEEE------ECSSCEE----------E
T ss_pred             EeccCCccceeccccceeeeeccccccceEECCCCCEE-EEEEEcCCCCceEecCC------CCCCccc----------c
Confidence            555444432                4789999999974 555544 3444443100      0000000          0


Q ss_pred             eeeccccccCCCCCcCCCCccccccCCCceeecccceeecC--CccccccCCCcccccccccccccCeEEEEEccCCCEE
Q 013274          247 VSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAK--GSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL  324 (446)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l  324 (446)
                      .........               ....   ...+..+...  +... .+.        ....|...+..++| |||++|
T Consensus       249 ~~~~~~~~g---------------~~~~---~~~l~~~d~~~~~~~~-~~~--------~~~~~~~~~~~~~~-pDg~~l  300 (741)
T 2ecf_A          249 IEQRYPAAG---------------DANV---QVKLGVISPAEQAQTQ-WID--------LGKEQDIYLARVNW-RDPQHL  300 (741)
T ss_dssp             EEEECCBTT---------------SCCC---EEEEEEECSSTTCCCE-EEC--------CCSCSSEEEEEEEE-EETTEE
T ss_pred             eEeecCCCC---------------CCCC---eeEEEEEECCCCCceE-Eec--------CCCCcceEEEEEEe-CCCCEE
Confidence            000000000               0000   0000000000  0000 000        00135567899999 999999


Q ss_pred             EEeec-----CCcEEEEecCcCceeeeeeeEEEeecC----CCeEEEEcCCCcEEEEeCC-CceEEEEee-cCceEEEec
Q 013274          325 LSAGS-----DSRIRLWDVESGRNTLVNFETVRLQTS----KPIQLATTQDPAVVFVPCM-TAVKAFDIW-SGKTCLTFR  393 (446)
Q Consensus       325 ~sgs~-----D~~i~lWd~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~d~~-~~~~~~~l~  393 (446)
                      +.++.     +..|++||+.+++.... +..   ...    ....+++++++.+++++.. ...++|.+. +++ ...+.
T Consensus       301 ~~~~~~~~~~~~~i~~~d~~~g~~~~~-~~~---~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~  375 (741)
T 2ecf_A          301 SFQRQSRDQKKLDLVEVTLASNQQRVL-AHE---TSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALT  375 (741)
T ss_dssp             EEEEEETTSSEEEEEEEETTTCCEEEE-EEE---ECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESC
T ss_pred             EEEEecccCCeEEEEEEECCCCceEEE-EEc---CCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeee
Confidence            87654     67899999998764322 111   111    1235688999887776654 357888775 455 78889


Q ss_pred             ccccceEEE-EEcCCCCEEE-EeeCCC--cEEEeCCC
Q 013274          394 GHYEYVNCC-CFSSQDQELY-TGGNDR--QILVWCPS  426 (446)
Q Consensus       394 gH~~~v~~~-~fSpd~~~lv-tgs~D~--~v~vW~~~  426 (446)
                      .|...|..+ +||||++.|+ +++.|+  .++||.++
T Consensus       376 ~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~  412 (741)
T 2ecf_A          376 HGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP  412 (741)
T ss_dssp             CSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred             ecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence            999889887 5999999876 555565  89999775

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.87  E-value=3.8e-20  Score=174.42  Aligned_cols=267  Identities=12%  Similarity=0.122  Sum_probs=180.8

Q ss_pred             CEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccc-cEeEEEEeecCCc-EEEEEeCCCeEEEEECC
Q 013274           57 RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKY-AISSAIWYPVDTG-LFVTGSYDHYVKVWDTN  134 (446)
Q Consensus        57 ~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~-~V~~~~~~~~~~~-~l~s~s~D~~i~iWd~~  134 (446)
                      ++|++++.|++|.+||+.+++...            ..    ..++.. .+..+.++| +++ ++++++.++.|.+||+.
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~------------~~----~~~~~~~~~~~~~~s~-dg~~l~v~~~~~~~v~~~d~~   64 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDK------------VI----TIADAGPTPMVPMVAP-GGRIAYATVNKSESLVKIDLV   64 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEE------------EE----ECTTCTTCCCCEEECT-TSSEEEEEETTTTEEEEEETT
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEE------------EE----EcCCCCCCccceEEcC-CCCEEEEEeCCCCeEEEEECC
Confidence            479999999999999987654210            00    012211 245567776 565 45677778999999999


Q ss_pred             CCeeeEEEecCC------ceEEeeeccCCCCceEEEEee------------CCCcEEEEeCCCCceeeeeeCCCCCeEEE
Q 013274          135 CTRVVMNFKMPG------KVYRTAMSPLAASHMLIAAGT------------EDVQVRLCDIASGAISQTLSGHRDGIMTV  196 (446)
Q Consensus       135 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~lasgs------------~d~~v~vwd~~~~~~~~~l~~h~~~v~sv  196 (446)
                      +++.+..+....      .+..++++++.   ..++++.            .++.|.+||+++++....+.. ...+.++
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg---~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~  140 (337)
T 1pby_B           65 TGETLGRIDLSTPEERVKSLFGAALSPDG---KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITML  140 (337)
T ss_dssp             TCCEEEEEECCBTTEEEECTTCEEECTTS---SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCE
T ss_pred             CCCeEeeEEcCCcccccccccceEECCCC---CEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCccee
Confidence            998887776543      44556676643   3455554            579999999999888777764 4567889


Q ss_pred             EEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCce
Q 013274          197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGV  276 (446)
Q Consensus       197 ~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (446)
                      +|+|++++++ ++  ++.|.+||+.+++....+.......                                        
T Consensus       141 ~~s~dg~~l~-~~--~~~i~~~d~~~~~~~~~~~~~~~~~----------------------------------------  177 (337)
T 1pby_B          141 AWARDGSKLY-GL--GRDLHVMDPEAGTLVEDKPIQSWEA----------------------------------------  177 (337)
T ss_dssp             EECTTSSCEE-EE--SSSEEEEETTTTEEEEEECSTTTTT----------------------------------------
T ss_pred             EECCCCCEEE-Ee--CCeEEEEECCCCcEeeeeeccccCC----------------------------------------
Confidence            9999998754 44  6899999998876554442111000                                        


Q ss_pred             eecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEee------------------------cCCc
Q 013274          277 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG------------------------SDSR  332 (446)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs------------------------~D~~  332 (446)
                                                        ++   .|+|||.+|+..+                        ....
T Consensus       178 ----------------------------------~~---~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (337)
T 1pby_B          178 ----------------------------------ET---YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTG  220 (337)
T ss_dssp             ----------------------------------TT---BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEE
T ss_pred             ----------------------------------Cc---eeCCCccEEeeeccCCCceeeeeeccccccccccccccccc
Confidence                                              00   1112222111110                        1116


Q ss_pred             EEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEE
Q 013274          333 IRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELY  412 (446)
Q Consensus       333 i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lv  412 (446)
                      |.+||+.+++....   ........+..+++++++..++++ ...+.+||+.+++....+..+ ..+.+++|+||+++|+
T Consensus       221 v~~~d~~~~~~~~~---~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~  295 (337)
T 1pby_B          221 LLTMDLETGEMAMR---EVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVW  295 (337)
T ss_dssp             EEEEETTTCCEEEE---EEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEE
T ss_pred             eEEEeCCCCCceEe---ecCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEE
Confidence            89999998764311   111222345568899999888877 678999999988887777654 4578999999999999


Q ss_pred             EeeCCCcEEEeCCCCCC
Q 013274          413 TGGNDRQILVWCPSRHI  429 (446)
Q Consensus       413 tgs~D~~v~vW~~~~~~  429 (446)
                      +++.|+.|++|++.+..
T Consensus       296 ~~~~~~~i~v~d~~~~~  312 (337)
T 1pby_B          296 LGGALGDLAAYDAETLE  312 (337)
T ss_dssp             EESBSSEEEEEETTTCC
T ss_pred             EEcCCCcEEEEECcCCc
Confidence            99999999999998654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.87  E-value=5.3e-19  Score=167.89  Aligned_cols=275  Identities=12%  Similarity=0.081  Sum_probs=191.7

Q ss_pred             CCccceeEEEeecCCCCEEEEeeC-------CCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEee
Q 013274           41 PHKGSINSLQVDLTEERYLLSGAS-------DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYP  113 (446)
Q Consensus        41 ~H~~~v~~l~~s~~~~~~l~s~s~-------Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~  113 (446)
                      +....+..++|+| ++++|++++.       +++|.+||.++++...            ...      ....+..+.+++
T Consensus        38 ~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~------------~~~------~~~~~~~~~~s~   98 (353)
T 3vgz_A           38 AVGKGAYEMAYSQ-QENALWLATSQSRKLDKGGVVYRLDPVTLEVTQ------------AIH------NDLKPFGATINN   98 (353)
T ss_dssp             EEESSEEEEEEET-TTTEEEEEECCCTTTEESEEEEEECTTTCCEEE------------EEE------ESSCCCSEEEET
T ss_pred             hhccCccceEECC-CCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEE------------EEe------cCCCcceEEECC
Confidence            3446788999997 4555666653       6789999987654210            000      111234456666


Q ss_pred             cCCc-EEEEEeCCCeEEEEECCCCeeeEEEecCC----------ceEEeeeccCCCCceEEEEe-eCCCcEEEEeCCCCc
Q 013274          114 VDTG-LFVTGSYDHYVKVWDTNCTRVVMNFKMPG----------KVYRTAMSPLAASHMLIAAG-TEDVQVRLCDIASGA  181 (446)
Q Consensus       114 ~~~~-~l~s~s~D~~i~iWd~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~lasg-s~d~~v~vwd~~~~~  181 (446)
                       +++ ++++...++.|.+||+.+++.+..+....          ....+.++++..  .+++++ ..++.|.+||+++++
T Consensus        99 -dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~i~~~d~~~~~  175 (353)
T 3vgz_A           99 -TTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATN--TVYISGIGKESVIWVVDGGNIK  175 (353)
T ss_dssp             -TTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTT--EEEEEEESSSCEEEEEETTTTE
T ss_pred             -CCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCC--EEEEEecCCCceEEEEcCCCCc
Confidence             666 55666778999999999999888777643          145677777532  344444 357899999999999


Q ss_pred             eeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCc
Q 013274          182 ISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSV  261 (446)
Q Consensus       182 ~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (446)
                      ....+..+...+.+++|+|++++ ++.++.++.|.+||+.+++....+...                             
T Consensus       176 ~~~~~~~~~~~~~~~~~s~dg~~-l~~~~~~~~i~~~d~~~~~~~~~~~~~-----------------------------  225 (353)
T 3vgz_A          176 LKTAIQNTGKMSTGLALDSEGKR-LYTTNADGELITIDTADNKILSRKKLL-----------------------------  225 (353)
T ss_dssp             EEEEECCCCTTCCCCEEETTTTE-EEEECTTSEEEEEETTTTEEEEEEECC-----------------------------
T ss_pred             eEEEecCCCCccceEEECCCCCE-EEEEcCCCeEEEEECCCCeEEEEEEcC-----------------------------
Confidence            88888766677889999999986 566777999999999876544332100                             


Q ss_pred             CCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEee-cCCcEEEEecCc
Q 013274          262 KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG-SDSRIRLWDVES  340 (446)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs-~D~~i~lWd~~~  340 (446)
                                                                 ..++...+..++|+|+|++|+.++ .++.|.+||+.+
T Consensus       226 -------------------------------------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~  262 (353)
T 3vgz_A          226 -------------------------------------------DDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRN  262 (353)
T ss_dssp             -------------------------------------------CSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTT
T ss_pred             -------------------------------------------CCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence                                                       001233478899999999766555 459999999988


Q ss_pred             CceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeC--CCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCC
Q 013274          341 GRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC--MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND  417 (446)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D  417 (446)
                      ++...    ...  ...+..+++++++..+++..  ...+.+||..+++....+..+. .+.+++|+||+++|+.+..+
T Consensus       263 ~~~~~----~~~--~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          263 GNILA----KVA--APESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT-HPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             CCEEE----EEE--CSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS-EEEEEEECTTSCEEEEEEEC
T ss_pred             CcEEE----EEE--cCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC-CCCeEEEcCCCCEEEEEEcc
Confidence            75321    111  23345688899988666654  4689999999999888877654 67999999999976654443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.86  E-value=3e-20  Score=171.37  Aligned_cols=254  Identities=13%  Similarity=0.114  Sum_probs=173.3

Q ss_pred             EeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCC-Ceee
Q 013274           61 SGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNC-TRVV  139 (446)
Q Consensus        61 s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~-~~~~  139 (446)
                      +++.|++|++||+.++...                  ....|...|.++.++| ++++|++++ ++.|++||+.+ ++..
T Consensus        17 ~~~~~~~i~~~d~~~~~~~------------------~~~~~~~~v~~~~~sp-dg~~l~~~~-~~~i~~~d~~~~~~~~   76 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMR------------------VVWQTPELFEAPNWSP-DGKYLLLNS-EGLLYRLSLAGDPSPE   76 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEE------------------EEEEESSCCEEEEECT-TSSEEEEEE-TTEEEEEESSSCCSCE
T ss_pred             CCCcceeEEEEeCCCCcee------------------eeccCCcceEeeEECC-CCCEEEEEc-CCeEEEEeCCCCCCce
Confidence            5578999999998765320                  1124677888988887 788998887 78999999998 7765


Q ss_pred             EEEecC--CceEEeeeccCCCCceEEEEee--CCCcEEEE--eCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCC
Q 013274          140 MNFKMP--GKVYRTAMSPLAASHMLIAAGT--EDVQVRLC--DIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDG  213 (446)
Q Consensus       140 ~~~~~~--~~~~~~~~~~~~~~~~~lasgs--~d~~v~vw--d~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg  213 (446)
                      ......  ..+..+.++++.   .+|++++  .++..+||  |+.++. ...+..+. .+..++|+|++++++++++.|+
T Consensus        77 ~~~~~~~~~~~~~~~~spdg---~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~  151 (297)
T 2ojh_A           77 KVDTGFATICNNDHGISPDG---ALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQ  151 (297)
T ss_dssp             ECCCTTCCCBCSCCEECTTS---SEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETT
T ss_pred             EeccccccccccceEECCCC---CEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCCCEEEEEECCCC
Confidence            544332  345566777643   4677776  33445555  555554 34444443 4889999999998766888999


Q ss_pred             cEEEEEccCCc-eeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCcccc
Q 013274          214 AIRFWDIRRAG-CFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQ  292 (446)
Q Consensus       214 ~I~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (446)
                      .++||+++... ...                                                                 
T Consensus       152 ~~~l~~~~~~~~~~~-----------------------------------------------------------------  166 (297)
T 2ojh_A          152 VFDIYSMDIDSGVET-----------------------------------------------------------------  166 (297)
T ss_dssp             EEEEEEEETTTCCEE-----------------------------------------------------------------
T ss_pred             ceEEEEEECCCCcce-----------------------------------------------------------------
Confidence            99999864211 000                                                                 


Q ss_pred             ccCCCcccccccccccccCeEEEEEccCCCEEEEee-cCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEE
Q 013274          293 RLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG-SDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVF  371 (446)
Q Consensus       293 ~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs-~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (446)
                                 ....|...+.+++|+|+|++|+.++ .|+.+++|++.........+   .........+.++|++..++
T Consensus       167 -----------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~s~dg~~l~  232 (297)
T 2ojh_A          167 -----------RLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI---TDSAYGDWFPHPSPSGDKVV  232 (297)
T ss_dssp             -----------ECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC---CCCSEEEEEEEECTTSSEEE
T ss_pred             -----------EcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEE---ecCCcccCCeEECCCCCEEE
Confidence                       0112345688999999999887666 59999999886321111111   11112234577889988776


Q ss_pred             EeCC------------CceEEEEeecCce--EEEecccccceEEEEEcCCCCEEEEeeCCC
Q 013274          372 VPCM------------TAVKAFDIWSGKT--CLTFRGHYEYVNCCCFSSQDQELYTGGNDR  418 (446)
Q Consensus       372 ~~~~------------~~~~~~d~~~~~~--~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~  418 (446)
                      ..+.            ..+.+||+.+++.  +..+.+|...+.+++|+||+++|++++.|.
T Consensus       233 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          233 FVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             EEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            6543            3488899987765  445668999999999999999999888764

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.86  E-value=2.7e-20  Score=194.58  Aligned_cols=316  Identities=11%  Similarity=0.062  Sum_probs=183.8

Q ss_pred             cceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccc---cEeEEEEeecCCcEEE
Q 013274           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKY---AISSAIWYPVDTGLFV  120 (446)
Q Consensus        44 ~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~---~V~~~~~~~~~~~~l~  120 (446)
                      ..+.+++|+| +|+++++ +.||+|++||+.+++..            ..     ..+|..   .|.++.++| |+++|+
T Consensus        17 ~~~~~~~~sp-dg~~~~~-~~dg~i~~~d~~~g~~~------------~~-----~~~~~~~~~~v~~~~~Sp-Dg~~l~   76 (723)
T 1xfd_A           17 IHDPEAKWIS-DTEFIYR-EQKGTVRLWNVETNTST------------VL-----IEGKKIESLRAIRYEISP-DREYAL   76 (723)
T ss_dssp             CCCCCCCBSS-SSCBCCC-CSSSCEEEBCGGGCCCE------------EE-----ECTTTTTTTTCSEEEECT-TSSEEE
T ss_pred             ccccccEEcC-CCcEEEE-eCCCCEEEEECCCCcEE------------EE-----eccccccccccceEEECC-CCCEEE
Confidence            3467889997 5776665 78999999999876431            01     123332   478888887 899999


Q ss_pred             EEeCC---------CeEEEEECCCCeeeEEEe-cCCc---eEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeee
Q 013274          121 TGSYD---------HYVKVWDTNCTRVVMNFK-MPGK---VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS  187 (446)
Q Consensus       121 s~s~D---------~~i~iWd~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~  187 (446)
                      +++.|         +.+.+||+.+++. ..+. ..++   +..++++|++   ..||+++. +.|++||+.+++......
T Consensus        77 ~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG---~~la~~~~-~~i~~~~~~~g~~~~~~~  151 (723)
T 1xfd_A           77 FSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKG---QQLIFIFE-NNIYYCAHVGKQAIRVVS  151 (723)
T ss_dssp             EEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSST---TCEEEEET-TEEEEESSSSSCCEEEEC
T ss_pred             EEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCC---CEEEEEEC-CeEEEEECCCCceEEEec
Confidence            99875         7888999998876 2232 2222   4556777754   46777664 799999999987766555


Q ss_pred             CCCCCe------------------EEEEEecCCCeEEEEee-CCCcEEEEEccCCceeEEeecccccccCCCccccccee
Q 013274          188 GHRDGI------------------MTVEWSTSSEWILVTGG-CDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVS  248 (446)
Q Consensus       188 ~h~~~v------------------~sv~~s~~~~~~l~S~s-~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (446)
                      .+...+                  .+++|+|+++.+ ++++ .++.+++|++.....-           ..+..    ..
T Consensus       152 ~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~l-a~~~~~~~~~~~~~~~~~~~~-----------~~~~~----~~  215 (723)
T 1xfd_A          152 TGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRL-AYAAINDSRVPIMELPTYTGS-----------IYPTV----KP  215 (723)
T ss_dssp             CCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEE-EEEEEECTTSCEEEECCCSSS-----------SSCCC----EE
T ss_pred             CCCCCceECcccceeEEEEeccCcceEEECCCCCEE-EEEEECCCccceEEeeccCCc-----------CCCcc----ee
Confidence            544433                  789999999975 5555 4457888886432100           00000    00


Q ss_pred             eccccccCCCCCcCCCCccccccCCCceeecccceeec-CCccccccCCCcccccccccccccCeEEEEEccCCCEEEEe
Q 013274          249 ISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPA-KGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSA  327 (446)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sg  327 (446)
                      +...... .     .        +.    ...+..... .+.....+.     .......|...+..++|||||++|++.
T Consensus       216 ~~~~~~G-~-----~--------~~----~~~l~~~d~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~SpDg~~l~~~  272 (723)
T 1xfd_A          216 YHYPKAG-S-----E--------NP----SISLHVIGLNGPTHDLEMM-----PPDDPRMREYYITMVKWATSTKVAVTW  272 (723)
T ss_dssp             EECCBTT-S-----C--------CC----EEEEEEEESSSSCCCEECC-----CCCCGGGSSEEEEEEEESSSSEEEEEE
T ss_pred             ccCCCCC-C-----C--------CC----eeEEEEEECCCCceeEEee-----CCccCCCccceeEEEEEeCCCeEEEEE
Confidence            0000000 0     0        00    000000000 000000000     000112245668999999999988776


Q ss_pred             ec----CCcEEEEecCcCceeeeeeeEEEeecCC----CeEEEEcCCCcEEEEe---CCC------ceEEEEeecCce--
Q 013274          328 GS----DSRIRLWDVESGRNTLVNFETVRLQTSK----PIQLATTQDPAVVFVP---CMT------AVKAFDIWSGKT--  388 (446)
Q Consensus       328 s~----D~~i~lWd~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~---~~~------~~~~~d~~~~~~--  388 (446)
                      +.    +..|++||+.+++.... +..  .....    ...++++|++..++..   ...      .+.+||+.++..  
T Consensus       273 ~~~~~~~~~i~~~d~~~g~~~~~-~~~--~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~  349 (723)
T 1xfd_A          273 LNRAQNVSILTLCDATTGVCTKK-HED--ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSND  349 (723)
T ss_dssp             EETTSCEEEEEEEETTTCCEEEE-EEE--ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSC
T ss_pred             EcCCCCeEEEEEEeCCCCcceEE-EEe--ccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcc
Confidence            53    35799999998764321 111  01111    1256889998865543   222      244555223333  


Q ss_pred             -EEEecccccceE-EEEEcCCCCEEEEeeCC---CcEEEeCCC
Q 013274          389 -CLTFRGHYEYVN-CCCFSSQDQELYTGGND---RQILVWCPS  426 (446)
Q Consensus       389 -~~~l~gH~~~v~-~~~fSpd~~~lvtgs~D---~~v~vW~~~  426 (446)
                       ...+..+...+. .++||||++.|+..+.+   +.++||.++
T Consensus       350 ~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~  392 (723)
T 1xfd_A          350 NIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN  392 (723)
T ss_dssp             CCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred             ceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEe
Confidence             555654444454 47999999999866555   789999875

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.85  E-value=2.2e-19  Score=195.31  Aligned_cols=280  Identities=11%  Similarity=0.048  Sum_probs=197.9

Q ss_pred             CccceeEEEee-cCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccc-cEeEEEEeecCCcEE
Q 013274           42 HKGSINSLQVD-LTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKY-AISSAIWYPVDTGLF  119 (446)
Q Consensus        42 H~~~v~~l~~s-~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~-~V~~~~~~~~~~~~l  119 (446)
                      |.+.|.+++|+ | ++++|++++ ++.|.+|++.++...                  ....|.. .+..+.|+  +++.|
T Consensus       294 ~~~~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~~~~------------------~~~~~~~~~~~~~~~s--dg~~l  351 (1045)
T 1k32_A          294 SIPSKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGTYVL------------------KVPEPLRIRYVRRGGD--TKVAF  351 (1045)
T ss_dssp             ECGGGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSSBEE------------------ECSCCSCEEEEEECSS--SEEEE
T ss_pred             cccccceeeecCC-CCCEEEEEE-cCEEEEEcCCCCceE------------------EccCCCcceEEeeeEc--CCCeE
Confidence            45579999999 7 577788887 889999998754310                  1124555 67777776  78899


Q ss_pred             EEEeCCCeEE-EEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEE
Q 013274          120 VTGSYDHYVK-VWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEW  198 (446)
Q Consensus       120 ~s~s~D~~i~-iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~  198 (446)
                      ++++.+..+. +||+.+++..........+..++++|+   ...|++++.++.|++||+++++....+.+|.+.+.+++|
T Consensus       352 ~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpD---G~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~  428 (1045)
T 1k32_A          352 IHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRN---GKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTI  428 (1045)
T ss_dssp             EEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTT---SSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEE
T ss_pred             EEEECCCceEEEEECCCCCceEecCCccceeeeEECCC---CCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEE
Confidence            9999988898 999987765432223345677888875   457889999999999999999888888789999999999


Q ss_pred             ecCCCeEEEEeeCC----------CcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccc
Q 013274          199 STSSEWILVTGGCD----------GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQK  268 (446)
Q Consensus       199 s~~~~~~l~S~s~D----------g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (446)
                      +|+++++ ++++.+          +.|++||+.++. ...                                        
T Consensus       429 SpDG~~l-a~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~----------------------------------------  466 (1045)
T 1k32_A          429 SDNSRFI-AYGFPLKHGETDGYVMQAIHVYDMEGRK-IFA----------------------------------------  466 (1045)
T ss_dssp             CTTSCEE-EEEEEECSSTTCSCCEEEEEEEETTTTE-EEE----------------------------------------
T ss_pred             CCCCCeE-EEEecCccccccCCCCCeEEEEECCCCc-EEE----------------------------------------
Confidence            9999974 555544          489999987643 111                                        


Q ss_pred             cccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCcee----
Q 013274          269 RSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNT----  344 (446)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~----  344 (446)
                                                          ...|...+..++|+|||++|+.++.++..++|+.......    
T Consensus       467 ------------------------------------l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~  510 (1045)
T 1k32_A          467 ------------------------------------ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVV  510 (1045)
T ss_dssp             ------------------------------------CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSC
T ss_pred             ------------------------------------eeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccC
Confidence                                                0123344677899999999999999888888875432110    


Q ss_pred             --e--eee-------------------------------eEEEeecCCCeEEEEcCCCcEEEE------------eC--C
Q 013274          345 --L--VNF-------------------------------ETVRLQTSKPIQLATTQDPAVVFV------------PC--M  375 (446)
Q Consensus       345 --~--~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~------------~~--~  375 (446)
                        .  ..+                               ..+.........+++++++..+++            ..  .
T Consensus       511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~  590 (1045)
T 1k32_A          511 SKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEK  590 (1045)
T ss_dssp             BEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCC
T ss_pred             ceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCC
Confidence              0  000                               000001112235677888876664            11  1


Q ss_pred             CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCC
Q 013274          376 TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI  429 (446)
Q Consensus       376 ~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~  429 (446)
                      ..+..||+.+++.. .+.   ..+..++|||||++|++++.| .|++|++.+..
T Consensus       591 ~~l~~~d~~~~~~~-~l~---~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~  639 (1045)
T 1k32_A          591 GVLLKYDVKTRKVT-EVK---NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP  639 (1045)
T ss_dssp             EEEEEEETTTCCEE-EEE---EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred             ceEEEEECCCCcEE-Eee---cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence            25667788777653 333   668899999999999999877 89999997655

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.85  E-value=7.9e-20  Score=186.38  Aligned_cols=269  Identities=10%  Similarity=0.025  Sum_probs=180.8

Q ss_pred             ccceeEEEeecCCCCEEEEeeC-CCcEEEEEcccCcCCCCCCccccccceEEeccccccCcc-ccEeEEEEeecCCcEEE
Q 013274           43 KGSINSLQVDLTEERYLLSGAS-DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHK-YAISSAIWYPVDTGLFV  120 (446)
Q Consensus        43 ~~~v~~l~~s~~~~~~l~s~s~-Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~-~~V~~~~~~~~~~~~l~  120 (446)
                      ..+|++++|+| ||+.||+++. ||+++||+++++...                  ....|. ..|.++.|+| + ++++
T Consensus        21 ~~~~~~~~~~~-DG~~la~~s~~~g~~~lw~~~~g~~~------------------~lt~~~~~~~~~~~~sp-d-~~l~   79 (582)
T 3o4h_A           21 AVEKYSLQGVV-DGDKLLVVGFSEGSVNAYLYDGGETV------------------KLNREPINSVLDPHYGV-G-RVIL   79 (582)
T ss_dssp             HSCEEEEEEEE-TTTEEEEEEEETTEEEEEEEETTEEE------------------ECCSSCCSEECEECTTC-S-EEEE
T ss_pred             ccchheeecCC-CCCeEEEEEccCCceeEEEEcCCCcE------------------eeecccccccccccCCC-C-eEEE
Confidence            45799999997 6788999887 999999998543210                  112333 5777888886 5 7888


Q ss_pred             EEeC---CCeEEEEECCC---CeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeE
Q 013274          121 TGSY---DHYVKVWDTNC---TRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM  194 (446)
Q Consensus       121 s~s~---D~~i~iWd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~  194 (446)
                      +++.   +...++|.+..   +... .+.........+++++.. ..++++++.++ +.+||+++++.......+ .  .
T Consensus        80 ~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~~~~~~~~s~dg~-~~~~~s~~~~~-~~l~d~~~g~~~~l~~~~-~--~  153 (582)
T 3o4h_A           80 VRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVKPMRILSGVDTGE-AVVFTGATEDR-VALYALDGGGLRELARLP-G--F  153 (582)
T ss_dssp             EEECSTTSCCEEEEEEETTSTTCCE-ECTTSCSBEEEEEEECSS-CEEEEEECSSC-EEEEEEETTEEEEEEEES-S--C
T ss_pred             EeccCCCCcceEEEEEeccCCCccc-cccCCCCceeeeeCCCCC-eEEEEecCCCC-ceEEEccCCcEEEeecCC-C--c
Confidence            8776   56667765432   2222 222222233456666542 34555555554 559999998765544433 3  8


Q ss_pred             EEEEecCCCeEEEEeeCC----CcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccc
Q 013274          195 TVEWSTSSEWILVTGGCD----GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRS  270 (446)
Q Consensus       195 sv~~s~~~~~~l~S~s~D----g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (446)
                      +++|+|++++ +++++.|    +.|++||+.++....                                           
T Consensus       154 ~~~~spDG~~-la~~~~~~~~~~~i~~~d~~~g~~~~-------------------------------------------  189 (582)
T 3o4h_A          154 GFVSDIRGDL-IAGLGFFGGGRVSLFTSNLSSGGLRV-------------------------------------------  189 (582)
T ss_dssp             EEEEEEETTE-EEEEEEEETTEEEEEEEETTTCCCEE-------------------------------------------
T ss_pred             eEEECCCCCE-EEEEEEcCCCCeEEEEEcCCCCCceE-------------------------------------------
Confidence            9999999996 5766666    789999987653210                                           


Q ss_pred             cCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCC--cEEEEecCcCceeeeee
Q 013274          271 ANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS--RIRLWDVESGRNTLVNF  348 (446)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~--~i~lWd~~~~~~~~~~~  348 (446)
                                                        ...|.+.+..++|||||++|+++..|+  +|++||+.+++..  .+
T Consensus       190 ----------------------------------l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~--~~  233 (582)
T 3o4h_A          190 ----------------------------------FDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE--DL  233 (582)
T ss_dssp             ----------------------------------ECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE--EC
T ss_pred             ----------------------------------eecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE--Ec
Confidence                                              123445678899999999999888898  8999999987643  11


Q ss_pred             eEEEeecCCCeEEE--------EcCCCcEEEEeC-CCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCc
Q 013274          349 ETVRLQTSKPIQLA--------TTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQ  419 (446)
Q Consensus       349 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~  419 (446)
                      ..   .......++        ++|++.++++.. ...+++|++  ++...   .+.+.|.+++|| |++++++++.+.+
T Consensus       234 ~~---~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~  304 (582)
T 3o4h_A          234 EL---PSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLST  304 (582)
T ss_dssp             CC---SCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTE
T ss_pred             cC---CCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCC
Confidence            11   011111223        889997666654 457899999  65544   345778999999 9999999888855


Q ss_pred             ---EEEeCCCC
Q 013274          420 ---ILVWCPSR  427 (446)
Q Consensus       420 ---v~vW~~~~  427 (446)
                         +.+|+..+
T Consensus       305 p~~l~~~d~~~  315 (582)
T 3o4h_A          305 PPRIVSLPSGE  315 (582)
T ss_dssp             EEEEEEETTCC
T ss_pred             CCeEEEEcCCC
Confidence               67777654

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.85  E-value=4.7e-19  Score=185.76  Aligned_cols=281  Identities=11%  Similarity=0.052  Sum_probs=188.8

Q ss_pred             ceeEEEeecCCCCEEEEeeCCCcEEEEEcccC---cCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEE
Q 013274           45 SINSLQVDLTEERYLLSGASDSSVAVYDVQRA---TDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT  121 (446)
Q Consensus        45 ~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s  121 (446)
                      .|.+++||| ++++|++++. ++|.+||+.++   ...                  ....|...+.++.|+| |+++|+.
T Consensus       110 ~v~~~~~Sp-Dg~~l~~~~~-~~i~~~d~~~~~~~~~~------------------~l~~~~~~~~~~~~SP-DG~~la~  168 (741)
T 2ecf_A          110 GIVDYQWSP-DAQRLLFPLG-GELYLYDLKQEGKAAVR------------------QLTHGEGFATDAKLSP-KGGFVSF  168 (741)
T ss_dssp             ESCCCEECT-TSSEEEEEET-TEEEEEESSSCSTTSCC------------------BCCCSSSCEEEEEECT-TSSEEEE
T ss_pred             CcceeEECC-CCCEEEEEeC-CcEEEEECCCCCcceEE------------------EcccCCcccccccCCC-CCCEEEE
Confidence            388999997 6888998886 99999999875   211                  1235666788888887 8889998


Q ss_pred             EeCCCeEEEEECCCCeeeEEEecCCc-----------------eEEeeeccCCCCceEEEEeeCCC--------------
Q 013274          122 GSYDHYVKVWDTNCTRVVMNFKMPGK-----------------VYRTAMSPLAASHMLIAAGTEDV--------------  170 (446)
Q Consensus       122 ~s~D~~i~iWd~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~lasgs~d~--------------  170 (446)
                      ++. +.|.+||+.+++..........                 ...+.++|++   ..|++++.|+              
T Consensus       169 ~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg---~~l~~~~~d~~~~~~~~~~~~~p~  244 (741)
T 2ecf_A          169 IRG-RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD---SAIAYARIDESPVPVQKRYEVYAD  244 (741)
T ss_dssp             EET-TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS---SCEEEEEEECTTSCEEEEEEECSS
T ss_pred             EeC-CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCC---CEEEEEEEcCCCCceEecCCCCCC
Confidence            885 5999999998876543222111                 2456777754   3566665554              


Q ss_pred             -------------------cEEEEeCCC-Cceeeeee--CCCCCeEEEEEecCCCeEEEEee----CCCcEEEEEccCCc
Q 013274          171 -------------------QVRLCDIAS-GAISQTLS--GHRDGIMTVEWSTSSEWILVTGG----CDGAIRFWDIRRAG  224 (446)
Q Consensus       171 -------------------~v~vwd~~~-~~~~~~l~--~h~~~v~sv~~s~~~~~~l~S~s----~Dg~I~iWd~~~~~  224 (446)
                                         .|++||+++ ++......  .|...+.+++| |+++++++++.    .+..|++||+.++.
T Consensus       245 ~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~  323 (741)
T 2ecf_A          245 RTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ  323 (741)
T ss_dssp             CEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC
T ss_pred             cccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc
Confidence                               789999998 87554433  47888999999 99997544433    35789999998766


Q ss_pred             eeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCccccccc
Q 013274          225 CFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDR  304 (446)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (446)
                      +...+.....                                                                      
T Consensus       324 ~~~~~~~~~~----------------------------------------------------------------------  333 (741)
T 2ecf_A          324 QRVLAHETSP----------------------------------------------------------------------  333 (741)
T ss_dssp             EEEEEEEECS----------------------------------------------------------------------
T ss_pred             eEEEEEcCCC----------------------------------------------------------------------
Confidence            5433211000                                                                      


Q ss_pred             ccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEE-EEcCCCcEEE-EeCCC---ceE
Q 013274          305 ATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQL-ATTQDPAVVF-VPCMT---AVK  379 (446)
Q Consensus       305 ~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~---~~~  379 (446)
                        +....+..++|+|||+++++++.|+.++||.+..... ...+   .........+ .+++++..++ .+..+   .++
T Consensus       334 --~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l---~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~  407 (741)
T 2ecf_A          334 --TWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAAL---THGNWSVDELLAVDEKAGLAYFRAGIESARESQ  407 (741)
T ss_dssp             --SCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEES---CCSSSCEEEEEEEETTTTEEEEEECSSCTTCBE
T ss_pred             --CcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeee---eecceEEEeEeEEeCCCCEEEEEEeCCCCceEE
Confidence              0001234578999999999999999988887653211 1111   1111122233 5889887654 44433   689


Q ss_pred             EEEeec-CceEEEecccccceEEEEEcCCCCEEEEeeCC----CcEEEeCCCCC
Q 013274          380 AFDIWS-GKTCLTFRGHYEYVNCCCFSSQDQELYTGGND----RQILVWCPSRH  428 (446)
Q Consensus       380 ~~d~~~-~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D----~~v~vW~~~~~  428 (446)
                      +|++.. ++....+.+ ...+.+++||||+++|+....+    ..+.+|+.++.
T Consensus       408 l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~  460 (741)
T 2ecf_A          408 IYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE  460 (741)
T ss_dssp             EEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred             EEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence            999874 565667766 6678999999999998854433    45788877644

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.84  E-value=3.2e-19  Score=185.98  Aligned_cols=328  Identities=11%  Similarity=0.032  Sum_probs=179.6

Q ss_pred             ceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCC-CCCCccccccce---EEeccccccCccccEeEEEEeecCCcEEE
Q 013274           45 SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDY-EGGGHIAKHRSV---FVVDKQHEHGHKYAISSAIWYPVDTGLFV  120 (446)
Q Consensus        45 ~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~gh~~~V~~~~~~~~~~~~l~  120 (446)
                      .++.+.|.   +..+++++.|+ | +||+.+++.. .   .+..+...   +..+......+...|.++.++| ++ .++
T Consensus        27 ~~~~~~w~---g~~~~~~~~~~-i-~~d~~tg~~~~~---~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~sp-d~-~~~   96 (706)
T 2z3z_A           27 YVVGLQWM---GDNYVFIEGDD-L-VFNKANGKSAQT---TRFSAADLNALMPEGCKFQTTDAFPSFRTLDAG-RG-LVV   96 (706)
T ss_dssp             -CTTCEEE---TTEEEEEETTE-E-EEEC-------C---EEEEHHHHHTTC-----------CCCEEEEETT-TT-EEE
T ss_pred             cCCCCcCc---CCeEEEEeCCc-E-EEECCCCcEeeE---EeechhHhhhhccchhccccccccCceeEEECC-CC-eEE
Confidence            36778886   34577788888 8 9999877531 0   00000000   0000000001124688888887 54 444


Q ss_pred             EEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCC-----CceeeeeeCCCCC---
Q 013274          121 TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS-----GAISQTLSGHRDG---  192 (446)
Q Consensus       121 s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~-----~~~~~~l~~h~~~---  192 (446)
                      .+ .|++|++||+.+++........+.+..++++|++   ..|+++ .|+.|++||+.+     ++.......+...   
T Consensus        97 ~~-~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG---~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~  171 (706)
T 2z3z_A           97 LF-TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVG---DRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVY  171 (706)
T ss_dssp             EE-ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTS---SEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred             EE-ECCEEEEEECCCCceEEccCCcccccCCcCCCCC---CEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence            44 3599999999988776555555556667787754   456664 579999999998     7765544444443   


Q ss_pred             -----------eEEEEEecCCCeEEEEeeC-CCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCC
Q 013274          193 -----------IMTVEWSTSSEWILVTGGC-DGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSS  260 (446)
Q Consensus       193 -----------v~sv~~s~~~~~~l~S~s~-Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (446)
                                 +.++.|+|++++ |++++. +..+..|.+....      ..      .+...    ......       
T Consensus       172 g~~~~~ee~~~~~~~~~SpDg~~-la~~~~d~~~~~~~~~~~~~------~~------~~~~~----~~~y~~-------  227 (706)
T 2z3z_A          172 GQAVHQREFGIEKGTFWSPKGSC-LAFYRMDQSMVKPTPIVDYH------PL------EAESK----PLYYPM-------  227 (706)
T ss_dssp             SSCCGGGCTTCCCSEEECTTSSE-EEEEEEECTTSCCEEEEECC------SS------SCEEE----EECCCB-------
T ss_pred             ccchhhhhcCCCceEEECCCCCE-EEEEEECCCCCceEEeeccC------CC------CCceE----EeeCCC-------
Confidence                       488999999997 455552 2222222211000      00      00000    000000       


Q ss_pred             cCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCC-----cEEE
Q 013274          261 VKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS-----RIRL  335 (446)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~-----~i~l  335 (446)
                                 .+.......+............+        .....|...+..++|+|||++|++++.|+     +|++
T Consensus       228 -----------~g~~~~~~~l~~~d~~~~~~~~~--------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~  288 (706)
T 2z3z_A          228 -----------AGTPSHHVTVGIYHLATGKTVYL--------QTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNA  288 (706)
T ss_dssp             -----------TTSCCCEEEEEEEETTTTEEEEC--------CCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEE
T ss_pred             -----------CCCCCCeeEEEEEECCCCceEee--------ccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEE
Confidence                       00000000000000000000000        00113456689999999999999988886     8999


Q ss_pred             EecCcCceeeeeeeEEEeec-CCCeEEEEcC--CCcEEEEeCC-CceEEEEee-cCceEEEecccccceEE-EEEcCCCC
Q 013274          336 WDVESGRNTLVNFETVRLQT-SKPIQLATTQ--DPAVVFVPCM-TAVKAFDIW-SGKTCLTFRGHYEYVNC-CCFSSQDQ  409 (446)
Q Consensus       336 Wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~-~~~~~~d~~-~~~~~~~l~gH~~~v~~-~~fSpd~~  409 (446)
                      ||+.+++............. .....++++|  ++.+++++.. ...++|.+. +++....+..|...+.+ ++||||++
T Consensus       289 ~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~  368 (706)
T 2z3z_A          289 YDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGT  368 (706)
T ss_dssp             EETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSS
T ss_pred             EECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCC
Confidence            99998732211111100000 0123467888  8887776644 468899887 67788889999888877 89999999


Q ss_pred             EEEEeeC-CC----cEEEeCCCCCCC
Q 013274          410 ELYTGGN-DR----QILVWCPSRHIS  430 (446)
Q Consensus       410 ~lvtgs~-D~----~v~vW~~~~~~~  430 (446)
                      .|+.++. ++    .|..|++++...
T Consensus       369 ~l~~~~~~~~~~~~~l~~~d~~~~~~  394 (706)
T 2z3z_A          369 RLYFESTEASPLERHFYCIDIKGGKT  394 (706)
T ss_dssp             EEEEEESSSCTTCBEEEEEETTCCCC
T ss_pred             EEEEEecCCCCceEEEEEEEcCCCCc
Confidence            8875544 44    555566665543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.84  E-value=3.3e-19  Score=185.92  Aligned_cols=282  Identities=11%  Similarity=0.057  Sum_probs=182.4

Q ss_pred             cceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEe
Q 013274           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS  123 (446)
Q Consensus        44 ~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s  123 (446)
                      ..|.+++|+|+ +. ++.+ .|++|++||+.++...            .      ...+...+.++.|+| ++++|+++ 
T Consensus        82 ~~v~~~~~spd-~~-~~~~-~~~~i~~~d~~~~~~~------------~------l~~~~~~~~~~~~Sp-dG~~la~~-  138 (706)
T 2z3z_A           82 FPSFRTLDAGR-GL-VVLF-TQGGLVGFDMLARKVT------------Y------LFDTNEETASLDFSP-VGDRVAYV-  138 (706)
T ss_dssp             CCCEEEEETTT-TE-EEEE-ETTEEEEEETTTTEEE------------E------EECCTTCCTTCEECT-TSSEEEEE-
T ss_pred             cCceeEEECCC-Ce-EEEE-ECCEEEEEECCCCceE------------E------ccCCcccccCCcCCC-CCCEEEEE-
Confidence            56999999985 54 4444 4599999999765321            0      112344566677876 88888885 


Q ss_pred             CCCeEEEEECCC-----CeeeEEEecCCc---------------eEEeeeccCCCCceEEEEee----------------
Q 013274          124 YDHYVKVWDTNC-----TRVVMNFKMPGK---------------VYRTAMSPLAASHMLIAAGT----------------  167 (446)
Q Consensus       124 ~D~~i~iWd~~~-----~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~lasgs----------------  167 (446)
                      .|++|++||+.+     ++..........               +..+.++|++   ..|++++                
T Consensus       139 ~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg---~~la~~~~d~~~~~~~~~~~~~~  215 (706)
T 2z3z_A          139 RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKG---SCLAFYRMDQSMVKPTPIVDYHP  215 (706)
T ss_dssp             ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTS---SEEEEEEEECTTSCCEEEEECCS
T ss_pred             ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCC---CEEEEEEECCCCCceEEeeccCC
Confidence            679999999988     765442222211               2456677753   4666665                


Q ss_pred             -----------------CCCcEEEEeCCCCceeeee--eCCCCCeEEEEEecCCCeEEEEeeCCC-----cEEEEEccCC
Q 013274          168 -----------------EDVQVRLCDIASGAISQTL--SGHRDGIMTVEWSTSSEWILVTGGCDG-----AIRFWDIRRA  223 (446)
Q Consensus       168 -----------------~d~~v~vwd~~~~~~~~~l--~~h~~~v~sv~~s~~~~~~l~S~s~Dg-----~I~iWd~~~~  223 (446)
                                       .+..|++||+++++.....  ..|...+.+++|+|++++ |++++.|+     .|++||+.++
T Consensus       216 ~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~-l~~~~~~~~~~~~~v~~~d~~~g  294 (706)
T 2z3z_A          216 LEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENI-LYVAEVNRAQNECKVNAYDAETG  294 (706)
T ss_dssp             SSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSE-EEEEEECTTSCEEEEEEEETTTC
T ss_pred             CCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCE-EEEEEeCCCCCeeEEEEEECCCC
Confidence                             4467999999998754433  257778999999999986 46666665     8999999876


Q ss_pred             ceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccc
Q 013274          224 GCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQD  303 (446)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (446)
                      .....+.....                                                                     
T Consensus       295 ~~~~~~~~~~~---------------------------------------------------------------------  305 (706)
T 2z3z_A          295 RFVRTLFVETD---------------------------------------------------------------------  305 (706)
T ss_dssp             CEEEEEEEEEC---------------------------------------------------------------------
T ss_pred             ceeeEEEEccC---------------------------------------------------------------------
Confidence            33222110000                                                                     


Q ss_pred             cccccccCeEEEEEcc--CCCEEEEeecCCcEEEEecC-cCceeeeeeeEEEeecCCCeE-EEEcCCCcEEEEeC-CC--
Q 013274          304 RATAHYGAVTGLKVTE--DGMYLLSAGSDSRIRLWDVE-SGRNTLVNFETVRLQTSKPIQ-LATTQDPAVVFVPC-MT--  376 (446)
Q Consensus       304 ~~~~h~~~v~~l~fs~--dg~~l~sgs~D~~i~lWd~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~--  376 (446)
                        ......+..+.|+|  ||++|++++.|+.++||++. ++.. ..   .+......... +++++++..++..+ .+  
T Consensus       306 --~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~-~~---~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~  379 (706)
T 2z3z_A          306 --KHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRL-IR---QVTKGEWEVTNFAGFDPKGTRLYFESTEASP  379 (706)
T ss_dssp             --SSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCE-EE---ECCCSSSCEEEEEEECTTSSEEEEEESSSCT
T ss_pred             --CCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCE-EE---ecCCCCeEEEeeeEEcCCCCEEEEEecCCCC
Confidence              00001134568999  99999999999999999876 3321 11   11111111222 67889987665543 32  


Q ss_pred             -ceEEE--EeecCceEEEecccccceEEEEEcCCCCEEEEeeCC----CcEEEeCCCCCC
Q 013274          377 -AVKAF--DIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND----RQILVWCPSRHI  429 (446)
Q Consensus       377 -~~~~~--d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D----~~v~vW~~~~~~  429 (446)
                       ..++|  ++.+++ ...+. |...+.+++||||+++|+....+    ..|.+|++.+..
T Consensus       380 ~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          380 LERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             TCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             ceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence             24555  444444 33443 77889999999999998865443    459999987654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.84  E-value=3.7e-18  Score=162.13  Aligned_cols=251  Identities=10%  Similarity=0.120  Sum_probs=160.1

Q ss_pred             ccEeEEEEeecCCcEEEEEeC--CCeEEEEECCCCee--eEEE-ecCCceEEeeeccCCCCceEEEEee-CCCcEEEEeC
Q 013274          104 YAISSAIWYPVDTGLFVTGSY--DHYVKVWDTNCTRV--VMNF-KMPGKVYRTAMSPLAASHMLIAAGT-EDVQVRLCDI  177 (446)
Q Consensus       104 ~~V~~~~~~~~~~~~l~s~s~--D~~i~iWd~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~lasgs-~d~~v~vwd~  177 (446)
                      ..+..++++| ++++++++..  ++.|.+||+.++..  +..+ ........++++++.   .+|++++ .++.|.+||+
T Consensus        40 ~~p~~~a~sp-dg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg---~~l~~~~~~~~~v~v~~~  115 (347)
T 3hfq_A           40 QNPTYLALSA-KDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEAR---QLVYSANYHKGTAEVMKI  115 (347)
T ss_dssp             SCCCCEEECT-TCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTT---TEEEEEETTTTEEEEEEE
T ss_pred             CCcceEEEcc-CCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCC---CEEEEEeCCCCEEEEEEe
Confidence            3455677776 7774444432  68999999977663  2222 123345667777753   3455554 7899999999


Q ss_pred             CC-Cc--eeeeeeC---------CCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCccccc
Q 013274          178 AS-GA--ISQTLSG---------HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKR  245 (446)
Q Consensus       178 ~~-~~--~~~~l~~---------h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (446)
                      +. +.  .+..+..         +...+.+++|+|+++ ++++...++.|++||+...+.+.....              
T Consensus       116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~--------------  180 (347)
T 3hfq_A          116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSV--------------  180 (347)
T ss_dssp             CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEE--------------
T ss_pred             CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeee--------------
Confidence            63 32  2333321         123478899999998 778888899999999873221111000              


Q ss_pred             ceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEE
Q 013274          246 KVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLL  325 (446)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~  325 (446)
                                                            .        .            ......+..++|+|||++|+
T Consensus       181 --------------------------------------~--------~------------~~~g~~p~~~~~spdg~~l~  202 (347)
T 3hfq_A          181 --------------------------------------L--------T------------MEAGFGPRHLVFSPDGQYAF  202 (347)
T ss_dssp             --------------------------------------E--------E------------CCTTCCEEEEEECTTSSEEE
T ss_pred             --------------------------------------E--------E------------cCCCCCCceEEECCCCCEEE
Confidence                                                  0        0            00011356799999999654


Q ss_pred             -EeecCCcEEEEecCcCceeeeeeeEEEeec------CCCeEEEEcCCCcEEEEe--CCCceEEEEeec-C--ceEEEec
Q 013274          326 -SAGSDSRIRLWDVESGRNTLVNFETVRLQT------SKPIQLATTQDPAVVFVP--CMTAVKAFDIWS-G--KTCLTFR  393 (446)
Q Consensus       326 -sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~-~--~~~~~l~  393 (446)
                       ++..++.|++|++......+..........      ..+..++++|++..+++.  ....+.+|++.. +  +.+..+.
T Consensus       203 v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~  282 (347)
T 3hfq_A          203 LAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIS  282 (347)
T ss_dssp             EEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEE
T ss_pred             EEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEe
Confidence             467789999999875211111111111111      124568899999877554  346899999963 2  4456777


Q ss_pred             ccccceEEEEEcCCCCEEEEeeC-CCcEEEe--CCCCCCCC
Q 013274          394 GHYEYVNCCCFSSQDQELYTGGN-DRQILVW--CPSRHISD  431 (446)
Q Consensus       394 gH~~~v~~~~fSpd~~~lvtgs~-D~~v~vW--~~~~~~~~  431 (446)
                      .|...+.+++||||+++|++++. ++.|.+|  +++++.+.
T Consensus       283 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          283 TEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             CSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             cCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence            77778999999999998887765 4899999  66555543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.83  E-value=1.1e-17  Score=158.00  Aligned_cols=279  Identities=11%  Similarity=0.129  Sum_probs=175.1

Q ss_pred             CCccceeEEEeecCCCCEEEEeeCC-CcEEEEEcc--cCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274           41 PHKGSINSLQVDLTEERYLLSGASD-SSVAVYDVQ--RATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (446)
Q Consensus        41 ~H~~~v~~l~~s~~~~~~l~s~s~D-g~i~lWd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~  117 (446)
                      +|.+.+.+++|+| ++++|++++.+ +.|++|+++  ++..          ..+...     ..+. .+..+.++| +++
T Consensus        35 ~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~~~~~~~~~~~~----------~~~~~~-----~~~~-~~~~~~~s~-dg~   96 (343)
T 1ri6_A           35 DVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGAL----------TFAAES-----ALPG-SLTHISTDH-QGQ   96 (343)
T ss_dssp             ECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCE----------EEEEEE-----ECSS-CCSEEEECT-TSS
T ss_pred             ecCCCCceEEECC-CCCEEEEeecCCCeEEEEEecCCCCce----------eecccc-----ccCC-CCcEEEEcC-CCC
Confidence            5777899999997 57777777776 999999987  3221          001001     1122 566777776 677


Q ss_pred             EEEEEe-CCCeEEEEECC---CCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCC-Cceee----eeeC
Q 013274          118 LFVTGS-YDHYVKVWDTN---CTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS-GAISQ----TLSG  188 (446)
Q Consensus       118 ~l~s~s-~D~~i~iWd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~-~~~~~----~l~~  188 (446)
                      ++++++ .|+.|.+||+.   ..+.+..+.....+..++++++..  .+++++..++.|++||+++ ++...    .+..
T Consensus        97 ~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~  174 (343)
T 1ri6_A           97 FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNR--TLWVPALKQDRICLFTVSDDGHLVAQDPAEVTT  174 (343)
T ss_dssp             EEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSS--EEEEEEGGGTEEEEEEECTTSCEEEEEEEEEEC
T ss_pred             EEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCC--EEEEecCCCCEEEEEEecCCCceeeeccccccc
Confidence            666555 48999999994   334444444445566677777532  3444444889999999987 64432    2332


Q ss_pred             -CCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCc-eeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCc
Q 013274          189 -HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAG-CFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAP  266 (446)
Q Consensus       189 -h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (446)
                       ....+..++|+|+++++++++..++.|++||+.... .+.......                                 
T Consensus       175 ~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~---------------------------------  221 (343)
T 1ri6_A          175 VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLD---------------------------------  221 (343)
T ss_dssp             STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEE---------------------------------
T ss_pred             CCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeecc---------------------------------
Confidence             345788999999999776777789999999985311 100000000                                 


Q ss_pred             cccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEE-EeecCCcEEEEecCc--Cce
Q 013274          267 QKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLL-SAGSDSRIRLWDVES--GRN  343 (446)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~-sgs~D~~i~lWd~~~--~~~  343 (446)
                                                ....        .......+..++|+|+|++|+ ++..|+.|++||+..  +..
T Consensus       222 --------------------------~~~~--------~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~  267 (343)
T 1ri6_A          222 --------------------------MMPE--------NFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVL  267 (343)
T ss_dssp             --------------------------CSCT--------TCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCE
T ss_pred             --------------------------ccCc--------cccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCce
Confidence                                      0000        000123467899999998776 556899999999983  322


Q ss_pred             eeeeeeEEEeecCCCeEEEEcCCCcEEEEeC--CCceEEEEee--cCce--EEEecccccceEEEEEcCCCCE
Q 013274          344 TLVNFETVRLQTSKPIQLATTQDPAVVFVPC--MTAVKAFDIW--SGKT--CLTFRGHYEYVNCCCFSSQDQE  410 (446)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~--~~~~--~~~l~gH~~~v~~~~fSpd~~~  410 (446)
                      ..  +..... ...+..+++++++..+++++  ...+.+|++.  +++.  +..+... ....+++|.|+.+.
T Consensus       268 ~~--~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~~i~~~~~~~~  336 (343)
T 1ri6_A          268 SK--EGFQPT-ETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMWVVVNAHEGG  336 (343)
T ss_dssp             EE--EEEEEC-SSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECS-SSCCEEEEEEEC--
T ss_pred             EE--eeeecC-CCccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccC-CCCeeEEEEcccCC
Confidence            11  122221 22366789999999888776  3688999765  4533  3344442 45678889887654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.83  E-value=5.5e-18  Score=159.61  Aligned_cols=239  Identities=8%  Similarity=0.087  Sum_probs=168.2

Q ss_pred             EeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCce-eeeeeCC
Q 013274          111 WYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI-SQTLSGH  189 (446)
Q Consensus       111 ~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~-~~~l~~h  189 (446)
                      +.+.....+++++.+++|++||+++++.+..+........++++++.  ..+++++..++.|++||+++++. ...+..+
T Consensus         5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~   82 (331)
T 3u4y_A            5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFVDTAITSDC--SNVVVTSDFCQTLVQIETQLEPPKVVAIQEG   82 (331)
T ss_dssp             --CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEEEEEECSSS--CEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred             EcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcceEEEcCCC--CEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence            33334556889999999999999999988777654332377777753  24555666688999999999987 7777777


Q ss_pred             CCCeEEEEEecCCCeEEEEeeCC-C--cEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCc
Q 013274          190 RDGIMTVEWSTSSEWILVTGGCD-G--AIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAP  266 (446)
Q Consensus       190 ~~~v~sv~~s~~~~~~l~S~s~D-g--~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (446)
                      ..+..+++|+|+++++ +++..+ +  .|++||+.+++....+.                                    
T Consensus        83 ~~~~~~~~~s~dg~~l-~~~~~~~~~~~i~v~d~~~~~~~~~~~------------------------------------  125 (331)
T 3u4y_A           83 QSSMADVDITPDDQFA-VTVTGLNHPFNMQSYSFLKNKFISTIP------------------------------------  125 (331)
T ss_dssp             SSCCCCEEECTTSSEE-EECCCSSSSCEEEEEETTTTEEEEEEE------------------------------------
T ss_pred             CCCccceEECCCCCEE-EEecCCCCcccEEEEECCCCCeEEEEE------------------------------------
Confidence            7776669999999875 455555 3  89999998765433221                                    


Q ss_pred             cccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEE-EEeecCCc-EEEEecCcCcee
Q 013274          267 QKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL-LSAGSDSR-IRLWDVESGRNT  344 (446)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l-~sgs~D~~-i~lWd~~~~~~~  344 (446)
                                                               +.....+++|+|||++| +++..++. |++|++......
T Consensus       126 -----------------------------------------~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~  164 (331)
T 3u4y_A          126 -----------------------------------------IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVL  164 (331)
T ss_dssp             -----------------------------------------CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCE
T ss_pred             -----------------------------------------CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcE
Confidence                                                     01125789999999855 45566688 999998853221


Q ss_pred             eeeeeEEEeecCCCeEEEEcCCCcEEEEeC--CCceEEEEeecCce---EEEecccccceEEEEEcCCCCEEE-EeeCCC
Q 013274          345 LVNFETVRLQTSKPIQLATTQDPAVVFVPC--MTAVKAFDIWSGKT---CLTFRGHYEYVNCCCFSSQDQELY-TGGNDR  418 (446)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~---~~~l~gH~~~v~~~~fSpd~~~lv-tgs~D~  418 (446)
                      .............+..++++|++..+++.+  ...+.+||+.+++.   ...+..+ ..+.+++|+|||++|+ +...++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~  243 (331)
T 3u4y_A          165 FDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTV  243 (331)
T ss_dssp             EEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEE
T ss_pred             eecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCC
Confidence            111011111123456788999998666553  45799999999888   7777755 5678999999999765 455688


Q ss_pred             cEEEeCCCCCCC
Q 013274          419 QILVWCPSRHIS  430 (446)
Q Consensus       419 ~v~vW~~~~~~~  430 (446)
                      .|.+|++.+...
T Consensus       244 ~i~~~d~~~~~~  255 (331)
T 3u4y_A          244 DVFNFNQLSGTL  255 (331)
T ss_dssp             EEEEEETTTTEE
T ss_pred             EEEEEECCCCce
Confidence            899999986654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.83  E-value=2.1e-18  Score=187.56  Aligned_cols=277  Identities=12%  Similarity=0.117  Sum_probs=200.1

Q ss_pred             eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (446)
Q Consensus        39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~  118 (446)
                      +.+|.+.+.++.|++ + .++++++.|++++||.+......     .           ....+|. .+....++| ++++
T Consensus       199 l~~~~~~v~~~~~s~-d-~l~~~~~~dg~~~l~~~~~~g~~-----~-----------~~l~~~~-~~~~~~~Sp-DG~~  258 (1045)
T 1k32_A          199 IVDMSTHVSSPVIVG-H-RIYFITDIDGFGQIYSTDLDGKD-----L-----------RKHTSFT-DYYPRHLNT-DGRR  258 (1045)
T ss_dssp             EECCSSCCEEEEEET-T-EEEEEECTTSSCEEEEEETTSCS-----C-----------EECCCCC-SSCEEEEEE-SSSC
T ss_pred             CcCCCCcccceEEeC-C-EEEEEEeccCceEEEEEeCCCCc-----c-----------eEecCCC-CcceeeEcC-CCCE
Confidence            378999999999985 3 67788889999999987532110     0           0011232 244556666 7888


Q ss_pred             EEEEeCCCeEEEEECCCCeeeEEEecC------------CceEEeeec-cCCCCceEEEEeeCCCcEEEEeCCCCceeee
Q 013274          119 FVTGSYDHYVKVWDTNCTRVVMNFKMP------------GKVYRTAMS-PLAASHMLIAAGTEDVQVRLCDIASGAISQT  185 (446)
Q Consensus       119 l~s~s~D~~i~iWd~~~~~~~~~~~~~------------~~~~~~~~~-~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~  185 (446)
                      ++.++ |+.|.+||+..... ..+...            +.+..++++ |++   ..+++++ ++.|++|++.++... .
T Consensus       259 la~~~-~~~i~~~d~~~~~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG---~~la~~~-~~~i~~~~~~~~~~~-~  331 (1045)
T 1k32_A          259 ILFSK-GGSIYIFNPDTEKI-EKIEIGDLESPEDRIISIPSKFAEDFSPLDG---DLIAFVS-RGQAFIQDVSGTYVL-K  331 (1045)
T ss_dssp             EEEEE-TTEEEEECTTTCCE-EECCCCCCCBCCSEEEECGGGGEEEEEECGG---GCEEEEE-TTEEEEECTTSSBEE-E
T ss_pred             EEEEe-CCEEEEecCCceEe-eeeccCcccccccccccccccceeeecCCCC---CEEEEEE-cCEEEEEcCCCCceE-E
Confidence            88774 89999999954433 333321            145677787 753   3566665 789999999887644 4


Q ss_pred             eeCCCC-CeEEEEEecCCCeEEEEeeCCCcEE-EEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCC
Q 013274          186 LSGHRD-GIMTVEWSTSSEWILVTGGCDGAIR-FWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKP  263 (446)
Q Consensus       186 l~~h~~-~v~sv~~s~~~~~~l~S~s~Dg~I~-iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (446)
                      +..|.+ .+..++|+ +++. |++++.++.+. +||+.++....                                    
T Consensus       332 ~~~~~~~~~~~~~~s-dg~~-l~~~s~~~~l~~~~d~~~~~~~~------------------------------------  373 (1045)
T 1k32_A          332 VPEPLRIRYVRRGGD-TKVA-FIHGTREGDFLGIYDYRTGKAEK------------------------------------  373 (1045)
T ss_dssp             CSCCSCEEEEEECSS-SEEE-EEEEETTEEEEEEEETTTCCEEE------------------------------------
T ss_pred             ccCCCcceEEeeeEc-CCCe-EEEEECCCceEEEEECCCCCceE------------------------------------
Confidence            667777 89999999 8875 57777777787 88876432100                                    


Q ss_pred             CCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCce
Q 013274          264 RAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRN  343 (446)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~  343 (446)
                                                               ..+|...+..++|+|||++|++++.|+.|++||+.+++.
T Consensus       374 -----------------------------------------l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~  412 (1045)
T 1k32_A          374 -----------------------------------------FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP  412 (1045)
T ss_dssp             -----------------------------------------CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred             -----------------------------------------ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCce
Confidence                                                     013445688999999999999999999999999998754


Q ss_pred             eeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-----------CceEEEEeecCceEEEecccccceEEEEEcCCCCEEE
Q 013274          344 TLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-----------TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELY  412 (446)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lv  412 (446)
                      ...    ...+......++++||+..++....           ..+.+||+.+++ ...+..|...+.+++|||||++|+
T Consensus       413 ~~~----~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~  487 (1045)
T 1k32_A          413 TVI----ERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLY  487 (1045)
T ss_dssp             EEE----EECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEE
T ss_pred             EEe----ccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEE
Confidence            221    1112334466889999987766532           378999998877 778889999999999999999999


Q ss_pred             EeeCCCcEEEeCCC
Q 013274          413 TGGNDRQILVWCPS  426 (446)
Q Consensus       413 tgs~D~~v~vW~~~  426 (446)
                      .++.++..++|+..
T Consensus       488 ~~s~~~~~~~~~~~  501 (1045)
T 1k32_A          488 YLSYRSLDPSPDRV  501 (1045)
T ss_dssp             EEESCCCCCEECSS
T ss_pred             EEecccCCcCcchh
Confidence            99999888888643

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.82  E-value=1e-17  Score=158.97  Aligned_cols=243  Identities=12%  Similarity=0.074  Sum_probs=175.4

Q ss_pred             cEeEEEEeecCCcEEEEEeC-------CCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeC
Q 013274          105 AISSAIWYPVDTGLFVTGSY-------DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI  177 (446)
Q Consensus       105 ~V~~~~~~~~~~~~l~s~s~-------D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~  177 (446)
                      .+..+.++| +++++++++.       +++|.+||+.+++.+..+........++++++.  ..++++...++.|.+||+
T Consensus        42 ~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg--~~l~v~~~~~~~v~~~d~  118 (353)
T 3vgz_A           42 GAYEMAYSQ-QENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTT--QTLWFGNTVNSAVTAIDA  118 (353)
T ss_dssp             SEEEEEEET-TTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTT--TEEEEEETTTTEEEEEET
T ss_pred             CccceEECC-CCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCC--CEEEEEecCCCEEEEEeC
Confidence            455667776 6777776663       578999999999988888776666667777643  346667777899999999


Q ss_pred             CCCceeeeeeCCCCC---------eEEEEEecCCCeEEEEe-eCCCcEEEEEccCCceeEEeecccccccCCCcccccce
Q 013274          178 ASGAISQTLSGHRDG---------IMTVEWSTSSEWILVTG-GCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKV  247 (446)
Q Consensus       178 ~~~~~~~~l~~h~~~---------v~sv~~s~~~~~~l~S~-s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (446)
                      ++++....+..+...         +.+++|+|+++.+++++ +.++.|.+||+.+++....+.                 
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~-----------------  181 (353)
T 3vgz_A          119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ-----------------  181 (353)
T ss_dssp             TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC-----------------
T ss_pred             CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec-----------------
Confidence            999988877765432         68899999998766555 358899999998765433221                 


Q ss_pred             eeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEe
Q 013274          248 SISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSA  327 (446)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sg  327 (446)
                                                                                 .+...+.+++|+|+|++|+++
T Consensus       182 -----------------------------------------------------------~~~~~~~~~~~s~dg~~l~~~  202 (353)
T 3vgz_A          182 -----------------------------------------------------------NTGKMSTGLALDSEGKRLYTT  202 (353)
T ss_dssp             -----------------------------------------------------------CCCTTCCCCEEETTTTEEEEE
T ss_pred             -----------------------------------------------------------CCCCccceEEECCCCCEEEEE
Confidence                                                                       011124557899999999999


Q ss_pred             ecCCcEEEEecCcCceeeeeeeEEEe-ecCCCeEEEEcCCCcEEEEeCC--CceEEEEeecCceEEEecccccceEEEEE
Q 013274          328 GSDSRIRLWDVESGRNTLVNFETVRL-QTSKPIQLATTQDPAVVFVPCM--TAVKAFDIWSGKTCLTFRGHYEYVNCCCF  404 (446)
Q Consensus       328 s~D~~i~lWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~l~gH~~~v~~~~f  404 (446)
                      +.++.|.+||+.+++.... +..... ....+..+++++++..+++...  ..+.+||+.+++....+..+.  ..+++|
T Consensus       203 ~~~~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~  279 (353)
T 3vgz_A          203 NADGELITIDTADNKILSR-KKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLF  279 (353)
T ss_dssp             CTTSEEEEEETTTTEEEEE-EECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEE
T ss_pred             cCCCeEEEEECCCCeEEEE-EEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEE
Confidence            9999999999988753211 111000 1112345788999887776543  579999999998887776544  367999


Q ss_pred             cCCCCEE-EEeeCCCcEEEeCCCCCC
Q 013274          405 SSQDQEL-YTGGNDRQILVWCPSRHI  429 (446)
Q Consensus       405 Spd~~~l-vtgs~D~~v~vW~~~~~~  429 (446)
                      +||+++| ++...++.|.+|++.+..
T Consensus       280 s~dg~~l~v~~~~~~~v~~~d~~~~~  305 (353)
T 3vgz_A          280 NPARNEAYVTHRQAGKVSVIDAKSYK  305 (353)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred             CCCCCEEEEEECCCCeEEEEECCCCe
Confidence            9999965 455579999999997654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.81  E-value=1.2e-17  Score=158.09  Aligned_cols=233  Identities=15%  Similarity=0.160  Sum_probs=164.4

Q ss_pred             cCCcEEEEEeCCCeEEEEECCCCeeeEEEecCC--ceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCC--
Q 013274          114 VDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPG--KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGH--  189 (446)
Q Consensus       114 ~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h--  189 (446)
                      .++.++++++.|++|.+||+.+++.+..+....  ....++++++.  ..+++++..++.|.+||+++++....+..+  
T Consensus         9 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg--~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~   86 (349)
T 1jmx_B            9 AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDN--RTAYVLNNHYGDIYGIDLDTCKNTFHANLSSV   86 (349)
T ss_dssp             TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTS--SEEEEEETTTTEEEEEETTTTEEEEEEESCCS
T ss_pred             CCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCC--CEEEEEeCCCCcEEEEeCCCCcEEEEEEcccc
Confidence            367789999999999999999999888887665  56677787753  345667777899999999999887776633  


Q ss_pred             ----CCCeEEEEEecCCCeEEEEeeCC------------CcEEEEEccCCceeEEeecccccccCCCcccccceeecccc
Q 013274          190 ----RDGIMTVEWSTSSEWILVTGGCD------------GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSL  253 (446)
Q Consensus       190 ----~~~v~sv~~s~~~~~~l~S~s~D------------g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (446)
                          ...+..++|+|+++++ ++++.+            +.|.+||+.+++..+.+.                       
T Consensus        87 ~~~~~~~~~~~~~spdg~~l-~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-----------------------  142 (349)
T 1jmx_B           87 PGEVGRSMYSFAISPDGKEV-YATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR-----------------------  142 (349)
T ss_dssp             TTEEEECSSCEEECTTSSEE-EEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSE-----------------------
T ss_pred             cccccccccceEECCCCCEE-EEEcccccccccccccCCCeEEEEECCCccccceee-----------------------
Confidence                2337889999999875 555544            899999987542110000                       


Q ss_pred             ccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcE
Q 013274          254 SAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRI  333 (446)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i  333 (446)
                                                                         ...+...+.+++|+|||+ ++.++.  .|
T Consensus       143 ---------------------------------------------------~~~~~~~~~~~~~s~dg~-l~~~~~--~i  168 (349)
T 1jmx_B          143 ---------------------------------------------------TFPMPRQVYLMRAADDGS-LYVAGP--DI  168 (349)
T ss_dssp             ---------------------------------------------------EEECCSSCCCEEECTTSC-EEEESS--SE
T ss_pred             ---------------------------------------------------eccCCCcccceeECCCCc-EEEccC--cE
Confidence                                                               001112367788999999 544433  49


Q ss_pred             EEEecCcCceeeeeeeEE-------------------------------Eee----------------------------
Q 013274          334 RLWDVESGRNTLVNFETV-------------------------------RLQ----------------------------  354 (446)
Q Consensus       334 ~lWd~~~~~~~~~~~~~~-------------------------------~~~----------------------------  354 (446)
                      .+||+.+++.... +...                               ...                            
T Consensus       169 ~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (349)
T 1jmx_B          169 YKMDVKTGKYTVA-LPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHT  247 (349)
T ss_dssp             EEECTTTCCEEEE-ECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEE
T ss_pred             EEEeCCCCceecc-ccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEe
Confidence            9999887653211 1000                               000                            


Q ss_pred             ------cCCCeEEEEcC-CCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCC
Q 013274          355 ------TSKPIQLATTQ-DPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR  427 (446)
Q Consensus       355 ------~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~  427 (446)
                            ...+..+++++ ++..++++ ...+.+||+.+++....+..+ ..+.+++|+||+++|++++.++.|++|++.+
T Consensus       248 ~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~  325 (349)
T 1jmx_B          248 QEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT  325 (349)
T ss_dssp             EEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred             cccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEeccc
Confidence                  00122345668 88888777 778999999999887777643 3478999999999999889999999999986


Q ss_pred             CC
Q 013274          428 HI  429 (446)
Q Consensus       428 ~~  429 (446)
                      ..
T Consensus       326 ~~  327 (349)
T 1jmx_B          326 LE  327 (349)
T ss_dssp             TE
T ss_pred             cc
Confidence            54

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.81  E-value=1.5e-18  Score=170.13  Aligned_cols=203  Identities=11%  Similarity=0.058  Sum_probs=142.6

Q ss_pred             EeEEEEeecCCcEEEEEeCCCeEEEEECCCC-----------e-----eeEEEecCCceEEeeeccCCCCceEEE----E
Q 013274          106 ISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT-----------R-----VVMNFKMPGKVYRTAMSPLAASHMLIA----A  165 (446)
Q Consensus       106 V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~-----------~-----~~~~~~~~~~~~~~~~~~~~~~~~~la----s  165 (446)
                      +..+++++ ++.++++++.|+ +++|+....           .     ....+.+.+.+..++++++.   .+|+    +
T Consensus        39 ~n~lavs~-~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg---~~lav~~~s  113 (434)
T 2oit_A           39 SSLLAVSN-KYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDN---LTLSACMMS  113 (434)
T ss_dssp             CBCEEEET-TTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTS---CEEEEEEEE
T ss_pred             ccEEEEec-CCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCC---CEEEEEEec
Confidence            34456665 667899999887 999874210           1     11223345568888998853   4666    7


Q ss_pred             eeCCCcEEEEeCCCC--------c---eeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccc
Q 013274          166 GTEDVQVRLCDIASG--------A---ISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQS  234 (446)
Q Consensus       166 gs~d~~v~vwd~~~~--------~---~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~  234 (446)
                      |+.|+.|++||++++        +   ....+.+|.+.|.+++|+|+...+|++++.||+|++||++++.+...      
T Consensus       114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~------  187 (434)
T 2oit_A          114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCA------  187 (434)
T ss_dssp             TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEE------
T ss_pred             cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceee------
Confidence            889999999998764        1   14566789999999999998445689999999999999986532110      


Q ss_pred             cccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEE
Q 013274          235 QLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTG  314 (446)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  314 (446)
                                                                                            ..+|...|++
T Consensus       188 ----------------------------------------------------------------------~~~~~~~v~~  197 (434)
T 2oit_A          188 ----------------------------------------------------------------------TLPSTVAVTS  197 (434)
T ss_dssp             ----------------------------------------------------------------------EECGGGCEEE
T ss_pred             ----------------------------------------------------------------------ccCCCCceeE
Confidence                                                                                  1246677999


Q ss_pred             EEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecc
Q 013274          315 LKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRG  394 (446)
Q Consensus       315 l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~g  394 (446)
                      ++|+|+|++|++|+.|++|++||++ +... .   ......          .                        .-..
T Consensus       198 v~wspdg~~lasgs~dg~v~iwd~~-~~~~-~---~~~~~~----------~------------------------~~~~  238 (434)
T 2oit_A          198 VCWSPKGKQLAVGKQNGTVVQYLPT-LQEK-K---VIPCPP----------F------------------------YESD  238 (434)
T ss_dssp             EEECTTSSCEEEEETTSCEEEECTT-CCEE-E---EECCCT----------T------------------------CCTT
T ss_pred             EEEcCCCCEEEEEcCCCcEEEEccC-Cccc-c---cccCCc----------c------------------------cCCC
Confidence            9999999999999999999999987 3211 0   000000          0                        0013


Q ss_pred             cccceEEEEEcCCCCEEEE-eeCCC------cEEEeCCCCC
Q 013274          395 HYEYVNCCCFSSQDQELYT-GGNDR------QILVWCPSRH  428 (446)
Q Consensus       395 H~~~v~~~~fSpd~~~lvt-gs~D~------~v~vW~~~~~  428 (446)
                      |...|.+++|++++.++++ .+.|+      .+++|++.+.
T Consensus       239 ~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          239 HPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             SCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             CceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            5567999999999988864 33443      3899998743

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.80  E-value=1.2e-17  Score=153.66  Aligned_cols=225  Identities=8%  Similarity=0.017  Sum_probs=163.9

Q ss_pred             EEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCC-CceeeeeeCC-CCCeEEEEE
Q 013274          121 TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS-GAISQTLSGH-RDGIMTVEW  198 (446)
Q Consensus       121 s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~-~~~~~~l~~h-~~~v~sv~~  198 (446)
                      +++.|++|++||+.+++......+.+.+..+.++|+.   .+|++++ ++.|++||+++ ++....+.+| ...+.+++|
T Consensus        17 ~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg---~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~   92 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDG---KYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGI   92 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTS---SEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEE
T ss_pred             CCCcceeEEEEeCCCCceeeeccCCcceEeeEECCCC---CEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEE
Confidence            4578999999999999887767777778889998854   4677765 78999999999 8777666666 477899999


Q ss_pred             ecCCCeEEEEee--CCCcEEEEEccCCc-eeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCc
Q 013274          199 STSSEWILVTGG--CDGAIRFWDIRRAG-CFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNG  275 (446)
Q Consensus       199 s~~~~~~l~S~s--~Dg~I~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (446)
                      +|++++ |++++  .++.++||.+.... ....                                               
T Consensus        93 spdg~~-l~~~~~~~~~~~~l~~~~~~~~~~~~-----------------------------------------------  124 (297)
T 2ojh_A           93 SPDGAL-YAISDKVEFGKSAIYLLPSTGGTPRL-----------------------------------------------  124 (297)
T ss_dssp             CTTSSE-EEEEECTTTSSCEEEEEETTCCCCEE-----------------------------------------------
T ss_pred             CCCCCE-EEEEEeCCCCcceEEEEECCCCceEE-----------------------------------------------
Confidence            999986 56666  44667777654210 0000                                               


Q ss_pred             eeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEE-EeecCCcEEEEecCcCceeeeeeeEEEee
Q 013274          276 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLL-SAGSDSRIRLWDVESGRNTLVNFETVRLQ  354 (446)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~-sgs~D~~i~lWd~~~~~~~~~~~~~~~~~  354 (446)
                                                    ..+...+..++|+|||++|+ +++.|+.+++|++........   .+...
T Consensus       125 ------------------------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~---~~~~~  171 (297)
T 2ojh_A          125 ------------------------------MTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVET---RLTHG  171 (297)
T ss_dssp             ------------------------------CCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEE---ECCCS
T ss_pred             ------------------------------eecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcce---EcccC
Confidence                                          00112377889999999877 888999999998643211111   11111


Q ss_pred             cCCCeEEEEcCCCcEEEEeC--CCceEEEEee-cCceEEEecccccceEEEEEcCCCCEEEEeeCC-----------CcE
Q 013274          355 TSKPIQLATTQDPAVVFVPC--MTAVKAFDIW-SGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND-----------RQI  420 (446)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~-~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D-----------~~v  420 (446)
                      ......+.++|++..++..+  ...+++|++. ++.....+..|...+.+++|+||+++|++++.|           ..|
T Consensus       172 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l  251 (297)
T 2ojh_A          172 EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRV  251 (297)
T ss_dssp             SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEE
T ss_pred             CCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEE
Confidence            23445678899988766543  4678999987 667778899999999999999999999988876           569


Q ss_pred             EEeCCCCCCC
Q 013274          421 LVWCPSRHIS  430 (446)
Q Consensus       421 ~vW~~~~~~~  430 (446)
                      .+|++.+...
T Consensus       252 ~~~d~~~~~~  261 (297)
T 2ojh_A          252 QLMDMDGGNV  261 (297)
T ss_dssp             EEEETTSCSC
T ss_pred             EEEecCCCCc
Confidence            9999986643

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.80  E-value=8.6e-18  Score=175.60  Aligned_cols=283  Identities=10%  Similarity=0.026  Sum_probs=181.7

Q ss_pred             eeEeCCCcc---ceeEEEeecCCCCEEEEeeCC---------CcEEEEEcccCcCCCCCCccccccceEEeccccccCcc
Q 013274           36 KEIVSPHKG---SINSLQVDLTEERYLLSGASD---------SSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHK  103 (446)
Q Consensus        36 ~~~~~~H~~---~v~~l~~s~~~~~~l~s~s~D---------g~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~  103 (446)
                      ..++.+|..   .|.+++||| +|++|++++.|         +.|.+||++++....    +           ....+|.
T Consensus        50 ~~~~~~~~~~~~~v~~~~~Sp-Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~----l-----------~~~~~~~  113 (723)
T 1xfd_A           50 TVLIEGKKIESLRAIRYEISP-DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQS----L-----------DPPEVSN  113 (723)
T ss_dssp             EEEECTTTTTTTTCSEEEECT-TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEE----C-----------CCTTCCS
T ss_pred             EEEeccccccccccceEEECC-CCCEEEEEecCccceeecceeeEEEEECCCCceEe----c-----------cCCcccc
Confidence            445666665   499999997 68899999875         778899998764210    0           1112455


Q ss_pred             ccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecC-C------------------ceEEeeeccCCCCceEEE
Q 013274          104 YAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-G------------------KVYRTAMSPLAASHMLIA  164 (446)
Q Consensus       104 ~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~-~------------------~~~~~~~~~~~~~~~~la  164 (446)
                      ..+..+.|+| |+++||.++. +.|++||+.+++........ .                  ....+.++|++   ..|+
T Consensus       114 ~~~~~~~~SP-dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg---~~la  188 (723)
T 1xfd_A          114 AKLQYAGWGP-KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG---TRLA  188 (723)
T ss_dssp             CCCSBCCBCS-STTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS---SEEE
T ss_pred             ccccccEECC-CCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCC---CEEE
Confidence            5566777877 8889998886 79999999987765433321 1                  12567788754   3566


Q ss_pred             EeeCCC----------------------------------cEEEEeCCCCceeeeeeCC------CCCeEEEEEecCCCe
Q 013274          165 AGTEDV----------------------------------QVRLCDIASGAISQTLSGH------RDGIMTVEWSTSSEW  204 (446)
Q Consensus       165 sgs~d~----------------------------------~v~vwd~~~~~~~~~l~~h------~~~v~sv~~s~~~~~  204 (446)
                      +++.|+                                  .|++||+.+++....+..|      ...+.+++|+|+++.
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~  268 (723)
T 1xfd_A          189 YAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKV  268 (723)
T ss_dssp             EEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEE
T ss_pred             EEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeE
Confidence            665432                                  7999999998866666654      677899999999985


Q ss_pred             EEEEee----CCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecc
Q 013274          205 ILVTGG----CDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSS  280 (446)
Q Consensus       205 ~l~S~s----~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (446)
                       +++.+    .+..|++||+.++++...+...                                                
T Consensus       269 -l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~------------------------------------------------  299 (723)
T 1xfd_A          269 -AVTWLNRAQNVSILTLCDATTGVCTKKHEDE------------------------------------------------  299 (723)
T ss_dssp             -EEEEEETTSCEEEEEEEETTTCCEEEEEEEE------------------------------------------------
T ss_pred             -EEEEEcCCCCeEEEEEEeCCCCcceEEEEec------------------------------------------------
Confidence             44443    2367999999876544332100                                                


Q ss_pred             cceeecCCccccccCCCcccccccccccccCe----EEEEEccCCCEEEE--eecCC------cEEEEe-cCcCce-eee
Q 013274          281 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAV----TGLKVTEDGMYLLS--AGSDS------RIRLWD-VESGRN-TLV  346 (446)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v----~~l~fs~dg~~l~s--gs~D~------~i~lWd-~~~~~~-~~~  346 (446)
                                                 |.+.+    ..++|+|||++|+.  +..|+      .|.+|| ..++.. ...
T Consensus       300 ---------------------------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~  352 (723)
T 1xfd_A          300 ---------------------------SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQ  352 (723)
T ss_dssp             ---------------------------CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCC
T ss_pred             ---------------------------cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcccee
Confidence                                       00111    24679999997764  45666      566777 343320 011


Q ss_pred             eeeEEEeecCCCe-EEEEcCCCcEEEEe-CC---CceEEEEeecCc--eEEEecc---cccceEEEEEcCCCCEEEE-ee
Q 013274          347 NFETVRLQTSKPI-QLATTQDPAVVFVP-CM---TAVKAFDIWSGK--TCLTFRG---HYEYVNCCCFSSQDQELYT-GG  415 (446)
Q Consensus       347 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~---~~~~~~d~~~~~--~~~~l~g---H~~~v~~~~fSpd~~~lvt-gs  415 (446)
                      .+.   ....... .+++++++..++.. ..   ...++|++....  ....+.+   |...+..++||||+++|+. ++
T Consensus       353 ~l~---~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~  429 (723)
T 1xfd_A          353 SIT---SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE  429 (723)
T ss_dssp             BSC---CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred             Eee---cCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEcc
Confidence            111   0011112 25789998877543 33   468899986432  3344554   7788999999999998774 44


Q ss_pred             CCC
Q 013274          416 NDR  418 (446)
Q Consensus       416 ~D~  418 (446)
                      .+.
T Consensus       430 ~~~  432 (723)
T 1xfd_A          430 GPG  432 (723)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            443

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.80  E-value=2.7e-18  Score=168.35  Aligned_cols=171  Identities=13%  Similarity=0.153  Sum_probs=123.9

Q ss_pred             ccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEE--
Q 013274           43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV--  120 (446)
Q Consensus        43 ~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~--  120 (446)
                      ...++.|++++ .+.+|++++.|+ |+||+............  ....+..........|...|.++.|++ ++++|+  
T Consensus        36 ~~~~n~lavs~-~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~lav~  110 (434)
T 2oit_A           36 KERSSLLAVSN-KYGLVFAGGASG-LQIFPTKNLLIQNKPGD--DPNKIVDKVQGLLVPMKFPIHHLALSC-DNLTLSAC  110 (434)
T ss_dssp             CSCCBCEEEET-TTTEEEEEETTE-EEEEEHHHHCCCCCTTC--CTTCEEECCCCEEECCSSCEEEEEECT-TSCEEEEE
T ss_pred             CCCccEEEEec-CCCEEEEECCCE-EEEEEchHhhhhccccc--CcccccccCccccccCCCcccEEEEcC-CCCEEEEE
Confidence            45689999997 466898998888 99998753321100000  000000000001124667899999987 778888  


Q ss_pred             --EEeCCCeEEEEECCCC--------eeeEEEe----cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeee
Q 013274          121 --TGSYDHYVKVWDTNCT--------RVVMNFK----MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL  186 (446)
Q Consensus       121 --s~s~D~~i~iWd~~~~--------~~~~~~~----~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l  186 (446)
                        +|+.|++|++||+.++        +.+..+.    +.+.+..+++++..  ..+|++++.|+.|++||++++......
T Consensus       111 ~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~--~~~las~s~Dg~v~iwD~~~~~~~~~~  188 (434)
T 2oit_A          111 MMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTV--PSMVAVCLADGSIAVLQVTETVKVCAT  188 (434)
T ss_dssp             EEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSC--TTEEEEEETTSCEEEEEESSSEEEEEE
T ss_pred             EeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCC--CCEEEEEECCCeEEEEEcCCCcceeec
Confidence              8999999999998654        2222222    24568889998853  358999999999999999999777777


Q ss_pred             eCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEcc
Q 013274          187 SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR  221 (446)
Q Consensus       187 ~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~  221 (446)
                      .+|...|.+++|+|++++ |++|+.||+|++||++
T Consensus       189 ~~~~~~v~~v~wspdg~~-lasgs~dg~v~iwd~~  222 (434)
T 2oit_A          189 LPSTVAVTSVCWSPKGKQ-LAVGKQNGTVVQYLPT  222 (434)
T ss_dssp             ECGGGCEEEEEECTTSSC-EEEEETTSCEEEECTT
T ss_pred             cCCCCceeEEEEcCCCCE-EEEEcCCCcEEEEccC
Confidence            789999999999999886 7899999999999987

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.79  E-value=1.3e-16  Score=152.41  Aligned_cols=251  Identities=10%  Similarity=0.041  Sum_probs=158.1

Q ss_pred             ccEeEEEEeecCCcEEEEEeCC----CeEEEEECCC--Cee--eEEEecC-CceEEeeeccCCCCceEEEEeeCCCcEEE
Q 013274          104 YAISSAIWYPVDTGLFVTGSYD----HYVKVWDTNC--TRV--VMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRL  174 (446)
Q Consensus       104 ~~V~~~~~~~~~~~~l~s~s~D----~~i~iWd~~~--~~~--~~~~~~~-~~~~~~~~~~~~~~~~~lasgs~d~~v~v  174 (446)
                      ..+..+.++| ++++|++++.+    +.|.+|+++.  ++.  +...... .....+++    .+..++++...++.|.+
T Consensus        50 ~~p~~l~~sp-dg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~----dg~~l~~~~~~~~~v~~  124 (361)
T 3scy_A           50 ANPSYLIPSA-DGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT----NGKNIVTANYSGGSITV  124 (361)
T ss_dssp             SCCCSEEECT-TSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE----CSSEEEEEETTTTEEEE
T ss_pred             CCCceEEECC-CCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE----CCCEEEEEECCCCEEEE
Confidence            3444567776 78889988886    8999998865  443  2222222 23344444    23345555557889999


Q ss_pred             EeCCCCceeeee------eC--------CCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCce------eEEeecccc
Q 013274          175 CDIASGAISQTL------SG--------HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGC------FRVLDQSQS  234 (446)
Q Consensus       175 wd~~~~~~~~~l------~~--------h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~------~~~~~~~~~  234 (446)
                      |++.....+..+      .+        +...+.+++|+|++++++++...++.|++|++.....      +.....   
T Consensus       125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~---  201 (361)
T 3scy_A          125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGT---  201 (361)
T ss_dssp             EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEE---
T ss_pred             EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccc---
Confidence            999754322211      11        1233578999999998777777789999999864321      000000   


Q ss_pred             cccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEE
Q 013274          235 QLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTG  314 (446)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  314 (446)
                                                                    ...                    ....+...+..
T Consensus       202 ----------------------------------------------~~~--------------------~~~~~~~~~~~  215 (361)
T 3scy_A          202 ----------------------------------------------PEA--------------------FKVAPGSGPRH  215 (361)
T ss_dssp             ----------------------------------------------EEE--------------------EECCTTCCEEE
T ss_pred             ----------------------------------------------ccc--------------------eecCCCCCCeE
Confidence                                                          000                    00011223678


Q ss_pred             EEEccCCCEEEEee-cCCcEEEEecCcCceeeeeeeEEEee---cCCCeEEEEcCCCcEEEEeC---CCceEEEEee--c
Q 013274          315 LKVTEDGMYLLSAG-SDSRIRLWDVESGRNTLVNFETVRLQ---TSKPIQLATTQDPAVVFVPC---MTAVKAFDIW--S  385 (446)
Q Consensus       315 l~fs~dg~~l~sgs-~D~~i~lWd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~~--~  385 (446)
                      ++|+|||++|+.++ .+++|.+||+.+++...  .......   ...+..++++|++..+++..   ...+.+|++.  +
T Consensus       216 ~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~--~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~  293 (361)
T 3scy_A          216 LIFNSDGKFAYLINEIGGTVIAFRYADGMLDE--IQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETN  293 (361)
T ss_dssp             EEECTTSSEEEEEETTTCEEEEEEEETTEEEE--EEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTT
T ss_pred             EEEcCCCCEEEEEcCCCCeEEEEEecCCceEE--eEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCC
Confidence            99999999876666 68999999998664221  1111111   12345788999999876653   3579999995  4


Q ss_pred             Cc--eEEEecccccceEEEEEcCCCCEEEEee-CCCcEEEe--CCCCCCCC
Q 013274          386 GK--TCLTFRGHYEYVNCCCFSSQDQELYTGG-NDRQILVW--CPSRHISD  431 (446)
Q Consensus       386 ~~--~~~~l~gH~~~v~~~~fSpd~~~lvtgs-~D~~v~vW--~~~~~~~~  431 (446)
                      ++  .+..+.. ...+.+++|||||++|++++ .++.|.+|  ++.++.+.
T Consensus       294 g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~  343 (361)
T 3scy_A          294 GTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLT  343 (361)
T ss_dssp             CCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             CcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEe
Confidence            44  3344554 55788999999999888776 67999996  55555443

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.78  E-value=3.4e-17  Score=157.72  Aligned_cols=287  Identities=11%  Similarity=0.050  Sum_probs=174.5

Q ss_pred             eCCCccceeE-----EEeecCCCCEEEEeeC-CCc--EEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEE
Q 013274           39 VSPHKGSINS-----LQVDLTEERYLLSGAS-DSS--VAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAI  110 (446)
Q Consensus        39 ~~~H~~~v~~-----l~~s~~~~~~l~s~s~-Dg~--i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~  110 (446)
                      ++.|.+.+..     .+|+| +|++|+.++. |+.  |.+||+.++...                 +...+|...+....
T Consensus        26 lt~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~g~~~l~~~d~~~g~~~-----------------~lt~~~~~~~~~~~   87 (388)
T 3pe7_A           26 LTPPDVTCHRNYFYQKCFTR-DGSKLLFGGAFDGPWNYYLLDLNTQVAT-----------------QLTEGRGDNTFGGF   87 (388)
T ss_dssp             CSCTTSCEECCCTTSCCBCT-TSCEEEEEECTTSSCEEEEEETTTCEEE-----------------ECCCSSCBCSSSCE
T ss_pred             ecCCcccccchhhcCccCCC-CCCEEEEEEcCCCCceEEEEeCCCCceE-----------------EeeeCCCCCccceE
Confidence            4566655555     78997 6788888877 774  777787765321                 11123443333445


Q ss_pred             EeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCce-EEeee--ccCCCCceEEEE----------------------
Q 013274          111 WYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKV-YRTAM--SPLAASHMLIAA----------------------  165 (446)
Q Consensus       111 ~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~las----------------------  165 (446)
                      |+| +++.|+.++.++.|.+||+.+++....+..+... ....+  .+   +..+++.                      
T Consensus        88 ~sp-dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~---dg~~l~~~~~~~~~~~~~~~~~~~~~~~~  163 (388)
T 3pe7_A           88 LSP-DDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANS---DCTKLVGIEIRREDWVPLTDWKKFHEFYF  163 (388)
T ss_dssp             ECT-TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECT---TSSEEEEEEEEGGGCCCCCSHHHHHHHGG
T ss_pred             EcC-CCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECC---CCCeeccccccCcccccccccchhhhhhc
Confidence            666 8899999999999999999998876655554432 11222  33   2234442                      


Q ss_pred             eeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEec-CCCeEEEEeeCC------CcEEEEEccCCceeEEeecccccccC
Q 013274          166 GTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWST-SSEWILVTGGCD------GAIRFWDIRRAGCFRVLDQSQSQLGR  238 (446)
Q Consensus       166 gs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~-~~~~~l~S~s~D------g~I~iWd~~~~~~~~~~~~~~~~~~~  238 (446)
                      ...+..|++||+.+++. ..+..+...+..+.|+| +++.+ +.++.+      ..|.++|+..+.. +.+         
T Consensus       164 ~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~sp~dg~~l-~~~~~~~~~~~~~~l~~~d~~~~~~-~~l---------  231 (388)
T 3pe7_A          164 TKPCCRLMRVDLKTGES-TVILQENQWLGHPIYRPYDDSTV-AFCHEGPHDLVDARMWLINEDGTNM-RKV---------  231 (388)
T ss_dssp             GCCCEEEEEEETTTCCE-EEEEEESSCEEEEEEETTEEEEE-EEEECSCTTTSSCSEEEEETTSCCC-EES---------
T ss_pred             cCCcceEEEEECCCCce-EEeecCCccccccEECCCCCCEE-EEEEecCCCCCcceEEEEeCCCCce-EEe---------
Confidence            22456899999999864 44455677889999999 88764 444432      2566666543210 000         


Q ss_pred             CCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccc-cCeEEEEE
Q 013274          239 RPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHY-GAVTGLKV  317 (446)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~f  317 (446)
                                                                              .          ..+. ..+..+.|
T Consensus       232 --------------------------------------------------------~----------~~~~~~~~~~~~~  245 (388)
T 3pe7_A          232 --------------------------------------------------------K----------THAEGESCTHEFW  245 (388)
T ss_dssp             --------------------------------------------------------C----------CCCTTEEEEEEEE
T ss_pred             --------------------------------------------------------e----------eCCCCcccccceE
Confidence                                                                    0          0001 13667889


Q ss_pred             ccCCCEEEEeec--CC---cEEEEecCcCceeee-eeeEEEeecCCCeEEEEcCCCcEEEEe----------CCCceEEE
Q 013274          318 TEDGMYLLSAGS--DS---RIRLWDVESGRNTLV-NFETVRLQTSKPIQLATTQDPAVVFVP----------CMTAVKAF  381 (446)
Q Consensus       318 s~dg~~l~sgs~--D~---~i~lWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~  381 (446)
                      +|||+.|+..+.  ++   .|.+||+.+++.... .+.............+++|++..++..          ....+.+|
T Consensus       246 spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~  325 (388)
T 3pe7_A          246 VPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVF  325 (388)
T ss_dssp             CTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEE
T ss_pred             CCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEE
Confidence            999997755443  22   399999998764322 111100000001112466776655432          23468889


Q ss_pred             EeecCceEEEeccccc-----------ceEEEEEcCCCCEEEEee-CCCcEEEeCCC
Q 013274          382 DIWSGKTCLTFRGHYE-----------YVNCCCFSSQDQELYTGG-NDRQILVWCPS  426 (446)
Q Consensus       382 d~~~~~~~~~l~gH~~-----------~v~~~~fSpd~~~lvtgs-~D~~v~vW~~~  426 (446)
                      |+.+++. ..+..|..           .+.+++|||||++|+.++ .++...||..+
T Consensus       326 d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~  381 (388)
T 3pe7_A          326 NMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT  381 (388)
T ss_dssp             ETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             eccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence            9877654 56666766           578999999999888655 57888888654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.77  E-value=5.1e-17  Score=152.90  Aligned_cols=224  Identities=11%  Similarity=0.092  Sum_probs=159.1

Q ss_pred             cEEEEEeCCCeEEEEECCCCeeeEEEecCC---ceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeC-C---
Q 013274          117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPG---KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG-H---  189 (446)
Q Consensus       117 ~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~-h---  189 (446)
                      +++++++.|++|.+||+.+++.+..+...+   ....++++++.  ..+++++..++.|.+||+.+++....+.. +   
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg--~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~   79 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGG--RIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTS--SEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCC--CEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc
Confidence            478999999999999999999988887666   56777888753  24667777789999999999988776653 2   


Q ss_pred             -CCCeEEEEEecCCCeEEEEee------------CCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccC
Q 013274          190 -RDGIMTVEWSTSSEWILVTGG------------CDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAG  256 (446)
Q Consensus       190 -~~~v~sv~~s~~~~~~l~S~s------------~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (446)
                       ...+..++|+|+++++ ++++            .++.|.+||+.+++....+..                         
T Consensus        80 ~~~~~~~~~~s~dg~~l-~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-------------------------  133 (337)
T 1pby_B           80 RVKSLFGAALSPDGKTL-AIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-------------------------  133 (337)
T ss_dssp             EEECTTCEEECTTSSEE-EEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-------------------------
T ss_pred             ccccccceEECCCCCEE-EEEecccccccccccccCceEEEEECCCCcEEEEEeC-------------------------
Confidence             2267789999999875 4443            579999999976543322210                         


Q ss_pred             CCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEE
Q 013274          257 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW  336 (446)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lW  336 (446)
                                                                          ...+.+++|+|||++|+++  ++.|++|
T Consensus       134 ----------------------------------------------------~~~~~~~~~s~dg~~l~~~--~~~i~~~  159 (337)
T 1pby_B          134 ----------------------------------------------------PRQITMLAWARDGSKLYGL--GRDLHVM  159 (337)
T ss_dssp             ----------------------------------------------------CSSCCCEEECTTSSCEEEE--SSSEEEE
T ss_pred             ----------------------------------------------------CCCcceeEECCCCCEEEEe--CCeEEEE
Confidence                                                                1124567899999988877  6889999


Q ss_pred             ecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCC-------------------------ceEEEEeecCceE-E
Q 013274          337 DVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMT-------------------------AVKAFDIWSGKTC-L  390 (446)
Q Consensus       337 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~d~~~~~~~-~  390 (446)
                      |+.+++...    ...... ......+++++..++.....                         .+.+||+.+++.. .
T Consensus       160 d~~~~~~~~----~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~  234 (337)
T 1pby_B          160 DPEAGTLVE----DKPIQS-WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMR  234 (337)
T ss_dssp             ETTTTEEEE----EECSTT-TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEE
T ss_pred             ECCCCcEee----eeeccc-cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEe
Confidence            998875321    111111 01112445555544332211                         3578888887764 3


Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCC
Q 013274          391 TFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI  429 (446)
Q Consensus       391 ~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~  429 (446)
                      .+..|...+.+++|+||+++|+++  |+.|.+|++.+..
T Consensus       235 ~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~  271 (337)
T 1pby_B          235 EVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNA  271 (337)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTE
T ss_pred             ecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCc
Confidence            456677788999999999999988  7999999997653

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.77  E-value=1.8e-17  Score=168.97  Aligned_cols=231  Identities=11%  Similarity=0.050  Sum_probs=160.3

Q ss_pred             cccEeEEEEeecCCcEEEEEeC-CCeEEEEECCCCeeeEEEecC-CceEEeeeccCCCCceEEEEeeC---CCcEEEEeC
Q 013274          103 KYAISSAIWYPVDTGLFVTGSY-DHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTE---DVQVRLCDI  177 (446)
Q Consensus       103 ~~~V~~~~~~~~~~~~l~s~s~-D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lasgs~---d~~v~vwd~  177 (446)
                      ...|.++.++| ||++||+++. |++++||+++++...+..... ..+...+++|+    .++++++.   +...++|.+
T Consensus        21 ~~~~~~~~~~~-DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd----~~l~~~~~~~g~~~~~l~~~   95 (582)
T 3o4h_A           21 AVEKYSLQGVV-DGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG----RVILVRDVSKGAEQHALFKV   95 (582)
T ss_dssp             HSCEEEEEEEE-TTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS----EEEEEEECSTTSCCEEEEEE
T ss_pred             ccchheeecCC-CCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC----eEEEEeccCCCCcceEEEEE
Confidence            45688888887 8999998887 999999999776654433333 34566677764    46666554   455566554


Q ss_pred             CC---CceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccc
Q 013274          178 AS---GAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLS  254 (446)
Q Consensus       178 ~~---~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (446)
                      +.   +... .+..+. .+...+|+|+++.++++.+.++.+.+||+.++++.+..                         
T Consensus        96 ~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~-------------------------  148 (582)
T 3o4h_A           96 NTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELA-------------------------  148 (582)
T ss_dssp             ETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEE-------------------------
T ss_pred             eccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEee-------------------------
Confidence            33   2222 333222 34466888888654444444455569998765432111                         


Q ss_pred             cCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecC----
Q 013274          255 AGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD----  330 (446)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D----  330 (446)
                                                                          .+..  .+++|||||++|++++.|    
T Consensus       149 ----------------------------------------------------~~~~--~~~~~spDG~~la~~~~~~~~~  174 (582)
T 3o4h_A          149 ----------------------------------------------------RLPG--FGFVSDIRGDLIAGLGFFGGGR  174 (582)
T ss_dssp             ----------------------------------------------------EESS--CEEEEEEETTEEEEEEEEETTE
T ss_pred             ----------------------------------------------------cCCC--ceEEECCCCCEEEEEEEcCCCC
Confidence                                                                1111  567899999999988887    


Q ss_pred             CcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-C--ceEEEEeecCceEEEecccccceEEEE----
Q 013274          331 SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-T--AVKAFDIWSGKTCLTFRGHYEYVNCCC----  403 (446)
Q Consensus       331 ~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~d~~~~~~~~~l~gH~~~v~~~~----  403 (446)
                      ..|++||+.+++...     +.........++++||+..++.... .  .+.+||+.+++.. .+.+|...+..++    
T Consensus       175 ~~i~~~d~~~g~~~~-----l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~  248 (582)
T 3o4h_A          175 VSLFTSNLSSGGLRV-----FDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAI  248 (582)
T ss_dssp             EEEEEEETTTCCCEE-----ECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEE
T ss_pred             eEEEEEcCCCCCceE-----eecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccc
Confidence            789999998875421     1112233456889999998885433 3  6888999888877 8889988888888    


Q ss_pred             ----EcCCCCEEEEeeCCCcEEEeCC
Q 013274          404 ----FSSQDQELYTGGNDRQILVWCP  425 (446)
Q Consensus       404 ----fSpd~~~lvtgs~D~~v~vW~~  425 (446)
                          |||||+++++++.|++++||.+
T Consensus       249 ~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          249 TWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             EEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             cceeEcCCCcEEEEEEcCCcEEEEEE
Confidence                9999999999999999999998

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.77  E-value=1.3e-15  Score=145.31  Aligned_cols=271  Identities=11%  Similarity=0.133  Sum_probs=167.6

Q ss_pred             CccceeEEEeecCCCCEEEEeeCC----CcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274           42 HKGSINSLQVDLTEERYLLSGASD----SSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (446)
Q Consensus        42 H~~~v~~l~~s~~~~~~l~s~s~D----g~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~  117 (446)
                      |......|+|+| ++++|++++.+    +.|.+|+++....     .+   ..+..     ...+......+.+   +++
T Consensus        48 ~~~~p~~l~~sp-dg~~l~~~~~~~~~~~~v~~~~~~~~~g-----~~---~~~~~-----~~~~~~~p~~~~~---dg~  110 (361)
T 3scy_A           48 EVANPSYLIPSA-DGKFVYSVNEFSKDQAAVSAFAFDKEKG-----TL---HLLNT-----QKTMGADPCYLTT---NGK  110 (361)
T ss_dssp             ECSCCCSEEECT-TSSEEEEEECCSSTTCEEEEEEEETTTT-----EE---EEEEE-----EECSSSCEEEEEE---CSS
T ss_pred             cCCCCceEEECC-CCCEEEEEEccCCCCCcEEEEEEeCCCC-----cE---EEeeE-----eccCCCCcEEEEE---CCC
Confidence            566778899997 57888888886    7999999864210     00   00000     0112223434444   667


Q ss_pred             EEEEEe-CCCeEEEEECCCCeeeE----EEecC-----------CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc
Q 013274          118 LFVTGS-YDHYVKVWDTNCTRVVM----NFKMP-----------GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA  181 (446)
Q Consensus       118 ~l~s~s-~D~~i~iWd~~~~~~~~----~~~~~-----------~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~  181 (446)
                      ++++++ .+++|.+|++.....+.    .....           .+.+.++++|+.  ..++++...++.|++|+++...
T Consensus       111 ~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg--~~l~~~~~~~~~v~v~~~~~~~  188 (361)
T 3scy_A          111 NIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDG--KYLLADDLGTDQIHKFNINPNA  188 (361)
T ss_dssp             EEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTS--SEEEEEETTTTEEEEEEECTTC
T ss_pred             EEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCC--CEEEEEeCCCCEEEEEEEcCCC
Confidence            776666 58899999997533221    11111           124667888753  2355666668899999987543


Q ss_pred             e------e-------eeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCccccccee
Q 013274          182 I------S-------QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVS  248 (446)
Q Consensus       182 ~------~-------~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (446)
                      .      +       .....+......++|+|++++++++...++.|.+||+.++... .+....               
T Consensus       189 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~-~~~~~~---------------  252 (361)
T 3scy_A          189 NADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLD-EIQTVA---------------  252 (361)
T ss_dssp             CTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEE-EEEEEE---------------
T ss_pred             CcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceE-EeEEEe---------------
Confidence            1      1       1122345567899999999876566557899999998754321 110000               


Q ss_pred             eccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEee
Q 013274          249 ISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG  328 (446)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs  328 (446)
                                                                             ....+......++|+|||++|+++.
T Consensus       253 -------------------------------------------------------~~~~~~~~~~~i~~spdg~~l~v~~  277 (361)
T 3scy_A          253 -------------------------------------------------------ADTVNAQGSGDIHLSPDGKYLYASN  277 (361)
T ss_dssp             -------------------------------------------------------SCSSCCCCEEEEEECTTSSEEEEEE
T ss_pred             -------------------------------------------------------cCCCCCCCcccEEECCCCCEEEEEC
Confidence                                                                   0011223357899999999886655


Q ss_pred             c--CCcEEEEecC--cCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeC--CCceEEEEee--cCceEEEe-cccccce
Q 013274          329 S--DSRIRLWDVE--SGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC--MTAVKAFDIW--SGKTCLTF-RGHYEYV  399 (446)
Q Consensus       329 ~--D~~i~lWd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~--~~~~~~~l-~gH~~~v  399 (446)
                      .  +++|++|++.  +++...  ...... ...+..++++|++..++++.  ...+.+|.+.  ++++.... ..|...+
T Consensus       278 ~~~~~~i~v~~~~~~~g~~~~--~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p  354 (361)
T 3scy_A          278 RLKADGVAIFKVDETNGTLTK--VGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKP  354 (361)
T ss_dssp             CSSSCEEEEEEECTTTCCEEE--EEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSE
T ss_pred             CCCCCEEEEEEEcCCCCcEEE--eeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCC
Confidence            4  5899999996  333221  122222 33566789999999877765  3578887654  56654433 3466789


Q ss_pred             EEEEEc
Q 013274          400 NCCCFS  405 (446)
Q Consensus       400 ~~~~fS  405 (446)
                      .|++|.
T Consensus       355 ~~v~~~  360 (361)
T 3scy_A          355 VCLKFV  360 (361)
T ss_dssp             EEEEEE
T ss_pred             eEEEEc
Confidence            999996

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.77  E-value=6.7e-18  Score=176.41  Aligned_cols=316  Identities=13%  Similarity=0.080  Sum_probs=179.3

Q ss_pred             eEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccc---cEeEEEEeecCCcEEEEEe
Q 013274           47 NSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKY---AISSAIWYPVDTGLFVTGS  123 (446)
Q Consensus        47 ~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~---~V~~~~~~~~~~~~l~s~s  123 (446)
                      .+++|+| +++++++ +.|++|++||+.++...            .+.     .+|..   .+.++.++| |+++|++++
T Consensus        19 ~~~~~s~-dg~~~~~-~~d~~i~~~~~~~g~~~------------~~~-----~~~~~~~~~~~~~~~Sp-Dg~~la~~~   78 (719)
T 1z68_A           19 FFPNWIS-GQEYLHQ-SADNNIVLYNIETGQSY------------TIL-----SNRTMKSVNASNYGLSP-DRQFVYLES   78 (719)
T ss_dssp             CCCEESS-SSEEEEE-CTTSCEEEEESSSCCEE------------EEE-----CHHHHHTTTCSEEEECT-TSSEEEEEE
T ss_pred             CccEECC-CCeEEEE-cCCCCEEEEEcCCCcEE------------EEE-----ccccccccceeeEEECC-CCCeEEEEe
Confidence            3778987 5665555 46999999999876421            011     12322   377888887 899999887


Q ss_pred             C---------CCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeee-eCCCCCe
Q 013274          124 Y---------DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL-SGHRDGI  193 (446)
Q Consensus       124 ~---------D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l-~~h~~~v  193 (446)
                      .         |++|++||+++++.+....+.+.+..++++|++   ..||+++ ++.|++||+.++...... .++...|
T Consensus        79 ~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG---~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v  154 (719)
T 1z68_A           79 DYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVG---SKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKI  154 (719)
T ss_dssp             EEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSST---TCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTE
T ss_pred             cCceeEEeecceEEEEEECCCCccccceecCcccccceECCCC---CEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCe
Confidence            6         799999999998873222334556678888865   3566665 789999999988764432 2333322


Q ss_pred             -----------------EEEEEecCCCeEEEEeeCC-CcEEEEEccCCceeEEeecccccccCCCcccccceeecccccc
Q 013274          194 -----------------MTVEWSTSSEWILVTGGCD-GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSA  255 (446)
Q Consensus       194 -----------------~sv~~s~~~~~~l~S~s~D-g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (446)
                                       .+++|+|++++ |++++.| +.+++|.+....      ...     .+..    ..+.... .
T Consensus       155 ~~g~~~~v~~ee~~~~~~~~~wSPDG~~-la~~~~d~~~~~~~~~~~~~------~~~-----~~~~----~~~~yp~-~  217 (719)
T 1z68_A          155 FNGIPDWVYEEEMLATKYALWWSPNGKF-LAYAEFNDTDIPVIAYSYYG------DEQ-----YPRT----INIPYPK-A  217 (719)
T ss_dssp             EESSCCHHHHHHTTCSSCCEEECTTSSE-EEEEEEECTTSCEEEEEECC------SSS-----SCEE----EEEECCB-T
T ss_pred             EcccccceeeeecccCcccEEECCCCCE-EEEEEECCCCCceEEeeccC------CCC-----Cccc----eeecCCC-C
Confidence                             48999999997 5666544 556666542110      000     0000    0000000 0


Q ss_pred             CCCCCcCCCCccccccCCCceeecccceeecCCcccc-ccCCCcccccccccccccCeEEEEEccCCCEEEEeecC----
Q 013274          256 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQ-RLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD----  330 (446)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D----  330 (446)
                      ...             .    ...........+.... ..   .+.......+|...+..++|||||+++++....    
T Consensus       218 g~~-------------~----~~~~l~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~  277 (719)
T 1z68_A          218 GAK-------------N----PVVRIFIIDTTYPAYVGPQ---EVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNV  277 (719)
T ss_dssp             TSC-------------C----CEEEEEEEESSCHHHHCCE---ECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTE
T ss_pred             CCC-------------C----CeeEEEEEECCCCCcccee---EccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCe
Confidence            000             0    0000000000000000 00   000000123567779999999999877774433    


Q ss_pred             CcEEEEe----cCcCceeeeeeeEE-EeecCCCe-----EEEEcCCCcEEEE--eC-CC--ceEEEEeecCceEEEeccc
Q 013274          331 SRIRLWD----VESGRNTLVNFETV-RLQTSKPI-----QLATTQDPAVVFV--PC-MT--AVKAFDIWSGKTCLTFRGH  395 (446)
Q Consensus       331 ~~i~lWd----~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~--~~-~~--~~~~~d~~~~~~~~~l~gH  395 (446)
                      ..|.+||    +.+++.... +... ........     .++++|++..++.  .. ..  .+.+|++.+++ ...+..+
T Consensus       278 ~~l~~~d~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~  355 (719)
T 1z68_A          278 SVLSICDFREDWQTWDCPKT-QEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSG  355 (719)
T ss_dssp             EEEEEEEECSSSSSEECCGG-GEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCS
T ss_pred             EEEEEEcccCCCCCCceEEE-EecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccC
Confidence            2488899    766543211 1000 01111111     4678898875543  22 22  46666766655 5667777


Q ss_pred             ccceEEEEEcCCCCEEEEeeCC-----CcEEEeCCC
Q 013274          396 YEYVNCCCFSSQDQELYTGGND-----RQILVWCPS  426 (446)
Q Consensus       396 ~~~v~~~~fSpd~~~lvtgs~D-----~~v~vW~~~  426 (446)
                      ...+..+.++ |++.|+..+.+     +.+++|.++
T Consensus       356 ~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~  390 (719)
T 1z68_A          356 KWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRIS  390 (719)
T ss_dssp             SSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred             ceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEe
Confidence            7778888888 88887766554     889999765

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.76  E-value=4.9e-16  Score=148.78  Aligned_cols=247  Identities=9%  Similarity=0.059  Sum_probs=160.1

Q ss_pred             cEeEEEEeecCCcEEEEEeCCCeEEEEECC-CCeeeEEEec--CCceEEeeeccCCCCce--EEEEee------------
Q 013274          105 AISSAIWYPVDTGLFVTGSYDHYVKVWDTN-CTRVVMNFKM--PGKVYRTAMSPLAASHM--LIAAGT------------  167 (446)
Q Consensus       105 ~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~lasgs------------  167 (446)
                      .+..+.++| ++++|++++.+ +|.+|++. +++.......  .+....+++++   +..  +++++.            
T Consensus        41 ~~~~~a~sp-dg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp---dg~~l~~~~~~~~~~~~~~~~~~  115 (365)
T 1jof_A           41 PISWMTFDH-ERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADT---NTRAIFLLAAKQPPYAVYANPFY  115 (365)
T ss_dssp             CCSEEEECT-TSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTS---CCEEEEEEECSSTTCCEEEEEES
T ss_pred             CCcEEEECC-CCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECC---CCCEEEEEEecCCcceeccceee
Confidence            344566766 78889999988 99999997 7766543332  23233344554   333  344543            


Q ss_pred             -CCCcEEEEeCC-CCceeeeee----CCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEcc-CCceeEEeecccccccCCC
Q 013274          168 -EDVQVRLCDIA-SGAISQTLS----GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR-RAGCFRVLDQSQSQLGRRP  240 (446)
Q Consensus       168 -~d~~v~vwd~~-~~~~~~~l~----~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~-~~~~~~~~~~~~~~~~~~~  240 (446)
                       .++.+.+|+++ +++....+.    .+...+.+++|+|++++++++...++.|++||+. +++... +.          
T Consensus       116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~-~~----------  184 (365)
T 1jof_A          116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVEL-VG----------  184 (365)
T ss_dssp             SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEE-EE----------
T ss_pred             cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEE-ee----------
Confidence             68899999997 466544443    2556789999999998755444457899999986 443210 00          


Q ss_pred             cccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccC
Q 013274          241 PLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED  320 (446)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~d  320 (446)
                                                                ..                   ....|...+..++|+||
T Consensus       185 ------------------------------------------~~-------------------~~~~~g~~p~~~~~spd  203 (365)
T 1jof_A          185 ------------------------------------------SV-------------------DAPDPGDHPRWVAMHPT  203 (365)
T ss_dssp             ------------------------------------------EE-------------------ECSSTTCCEEEEEECTT
T ss_pred             ------------------------------------------eE-------------------ecCCCCCCCCEeEECCC
Confidence                                                      00                   00011234788999999


Q ss_pred             CCEEEEeec-CCcEEEEecC--cCceee--eeeeEEEee--c-C-------CCeEEE-EcCCCcEEEEeC--CC-----c
Q 013274          321 GMYLLSAGS-DSRIRLWDVE--SGRNTL--VNFETVRLQ--T-S-------KPIQLA-TTQDPAVVFVPC--MT-----A  377 (446)
Q Consensus       321 g~~l~sgs~-D~~i~lWd~~--~~~~~~--~~~~~~~~~--~-~-------~~~~~~-~~~~~~~~~~~~--~~-----~  377 (446)
                      |++|++++. +++|.+|++.  +++...  ..+..+...  . .       .+..++ ++|++..++++.  .+     .
T Consensus       204 g~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~  283 (365)
T 1jof_A          204 GNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGY  283 (365)
T ss_dssp             SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCE
T ss_pred             CCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCe
Confidence            998877664 7899999875  343211  111111000  0 1       245678 999998877653  23     7


Q ss_pred             eEEEEee-cCceEE---EecccccceEEEEEcC---CCCEEEEeeCC-CcEEEeCCCCC
Q 013274          378 VKAFDIW-SGKTCL---TFRGHYEYVNCCCFSS---QDQELYTGGND-RQILVWCPSRH  428 (446)
Q Consensus       378 ~~~~d~~-~~~~~~---~l~gH~~~v~~~~fSp---d~~~lvtgs~D-~~v~vW~~~~~  428 (446)
                      +.+|++. +++...   ....+...+..++|||   ||++|++++.+ ++|+||+.+..
T Consensus       284 i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          284 IAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            9999996 566543   2444666678899999   89999988765 89999988655

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.75  E-value=2.5e-15  Score=142.51  Aligned_cols=261  Identities=13%  Similarity=0.170  Sum_probs=162.7

Q ss_pred             CCccceeEEEeecCCCCEEEEeeC--CCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274           41 PHKGSINSLQVDLTEERYLLSGAS--DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (446)
Q Consensus        41 ~H~~~v~~l~~s~~~~~~l~s~s~--Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~  118 (446)
                      .+......|+|+| ++++++++..  ++.|.+||+.++...          .+.     ....|...+..+.++| ++++
T Consensus        37 ~~~~~p~~~a~sp-dg~l~~~~~~~~~~~v~~~~~~~g~~~----------~~~-----~~~~~~~~p~~~a~sp-dg~~   99 (347)
T 3hfq_A           37 AATQNPTYLALSA-KDCLYSVDKEDDEGGIAAWQIDGQTAH----------KLN-----TVVAPGTPPAYVAVDE-ARQL   99 (347)
T ss_dssp             EECSCCCCEEECT-TCEEEEEEEETTEEEEEEEEEETTEEE----------EEE-----EEEEESCCCSEEEEET-TTTE
T ss_pred             eccCCcceEEEcc-CCeEEEEEecCCCceEEEEEecCCcEE----------Eee-----eeecCCCCCEEEEECC-CCCE
Confidence            4556778899997 5664444432  689999999654310          000     0112444566777776 7888


Q ss_pred             EEEEe-CCCeEEEEECC-CCe--eeEEEecCC----------ceEEeeeccCCCCceEEEEeeCCCcEEEEeCC-CCcee
Q 013274          119 FVTGS-YDHYVKVWDTN-CTR--VVMNFKMPG----------KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA-SGAIS  183 (446)
Q Consensus       119 l~s~s-~D~~i~iWd~~-~~~--~~~~~~~~~----------~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~-~~~~~  183 (446)
                      |++++ .+++|++|++. ++.  .+..+...+          .+..++++++..   ++++...++.|++||++ ++...
T Consensus       100 l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~---l~v~~~~~~~v~~~~~~~~g~~~  176 (347)
T 3hfq_A          100 VYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR---LAVIDLGSDKVYVYNVSDAGQLS  176 (347)
T ss_dssp             EEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC---EEEEETTTTEEEEEEECTTSCEE
T ss_pred             EEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc---EEEEeCCCCEEEEEEECCCCcEE
Confidence            88777 78999999995 332  333333221          356678887542   77777788899999998 55432


Q ss_pred             --eeeeCC-CCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCC-ceeEEeecccccccCCCcccccceeeccccccCCCC
Q 013274          184 --QTLSGH-RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA-GCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNS  259 (446)
Q Consensus       184 --~~l~~h-~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (446)
                        ..+..+ ......++|+|+++++++++..++.|++|++... +.+........                         
T Consensus       177 ~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~-------------------------  231 (347)
T 3hfq_A          177 EQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKT-------------------------  231 (347)
T ss_dssp             EEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES-------------------------
T ss_pred             EeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeee-------------------------
Confidence              222322 3367889999999977777788999999998741 11111000000                         


Q ss_pred             CcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEE-EEeecCCcEEEEec
Q 013274          260 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL-LSAGSDSRIRLWDV  338 (446)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l-~sgs~D~~i~lWd~  338 (446)
                                                         .+.       .......+..++|+|||++| +++..+++|.+|++
T Consensus       232 -----------------------------------~~~-------~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~  269 (347)
T 3hfq_A          232 -----------------------------------IPA-------DYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAV  269 (347)
T ss_dssp             -----------------------------------SCT-------TCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEE
T ss_pred             -----------------------------------cCC-------CCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEE
Confidence                                               000       00001247889999999977 66677999999999


Q ss_pred             CcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC--CceEEEEee--cCceE
Q 013274          339 ESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAFDIW--SGKTC  389 (446)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~--~~~~~  389 (446)
                      .... ....+.........+..++++|++..++++..  ..+.+|++.  ++++.
T Consensus       270 ~~~g-~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          270 TADG-HLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             CGGG-CEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             CCCC-cEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence            7421 11112222222334677899999987777643  578999663  45543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.73  E-value=1.3e-16  Score=166.67  Aligned_cols=290  Identities=9%  Similarity=0.063  Sum_probs=175.8

Q ss_pred             eEeCCCcc---ceeEEEeecCCCCEEEEeeC---------CCcEEEEEcccCcCCCCCCccccccceEEeccccccCccc
Q 013274           37 EIVSPHKG---SINSLQVDLTEERYLLSGAS---------DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKY  104 (446)
Q Consensus        37 ~~~~~H~~---~v~~l~~s~~~~~~l~s~s~---------Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~  104 (446)
                      .++.+|..   .|.+++||| +|++|++++.         |++|++||+++++....       ..           ...
T Consensus        50 ~~~~~~~~~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~-------~~-----------l~~  110 (719)
T 1z68_A           50 TILSNRTMKSVNASNYGLSP-DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG-------NE-----------LPR  110 (719)
T ss_dssp             EEECHHHHHTTTCSEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS-------SC-----------CCS
T ss_pred             EEEccccccccceeeEEECC-CCCeEEEEecCceeEEeecceEEEEEECCCCccccc-------ee-----------cCc
Confidence            34445544   499999997 6888998877         79999999987643100       00           012


Q ss_pred             cEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCc---e-----------------EEeeeccCCCCceEEE
Q 013274          105 AISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK---V-----------------YRTAMSPLAASHMLIA  164 (446)
Q Consensus       105 ~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~---~-----------------~~~~~~~~~~~~~~la  164 (446)
                      .+..+.|+| |++.||.++ |++|++||+.+++... +...+.   +                 ..++++|++   ..|+
T Consensus       111 ~~~~~~~SP-DG~~la~~~-~~~i~~~~~~~g~~~~-l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG---~~la  184 (719)
T 1z68_A          111 PIQYLCWSP-VGSKLAYVY-QNNIYLKQRPGDPPFQ-ITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNG---KFLA  184 (719)
T ss_dssp             SBCCEEECS-STTCEEEEE-TTEEEEESSTTSCCEE-CCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTS---SEEE
T ss_pred             ccccceECC-CCCEEEEEE-CCeEEEEeCCCCCcEE-EecCCCcCCeEcccccceeeeecccCcccEEECCCC---CEEE
Confidence            355677887 888998886 7899999998877543 221111   1                 256777754   4677


Q ss_pred             EeeCCC----------------------------------cEEEEeCCCCcee--------eeeeCCCCCeEEEEEecCC
Q 013274          165 AGTEDV----------------------------------QVRLCDIASGAIS--------QTLSGHRDGIMTVEWSTSS  202 (446)
Q Consensus       165 sgs~d~----------------------------------~v~vwd~~~~~~~--------~~l~~h~~~v~sv~~s~~~  202 (446)
                      +++.|.                                  .|++||+++++..        ..+.+|...+.+++|+|++
T Consensus       185 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~  264 (719)
T 1z68_A          185 YAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDE  264 (719)
T ss_dssp             EEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSS
T ss_pred             EEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCC
Confidence            766442                                  7889999988643        2345788899999999996


Q ss_pred             CeEEEEeeCC----CcEEEEE----ccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCC
Q 013274          203 EWILVTGGCD----GAIRFWD----IRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGN  274 (446)
Q Consensus       203 ~~~l~S~s~D----g~I~iWd----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (446)
                      + ++++....    ..|.+||    +.++.+...+.                                            
T Consensus       265 ~-~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~--------------------------------------------  299 (719)
T 1z68_A          265 R-VCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQE--------------------------------------------  299 (719)
T ss_dssp             E-EEEEEEESSTTEEEEEEEEECSSSSSEECCGGGE--------------------------------------------
T ss_pred             e-EEEEEeccccCeEEEEEEcccCCCCCCceEEEEe--------------------------------------------
Confidence            5 55554322    2477888    54432210000                                            


Q ss_pred             ceeecccceeecCCccccccCCCcccccccccccccCeE-----EEEEccCCCEEE--EeecCC--cEEEEecCcCceee
Q 013274          275 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVT-----GLKVTEDGMYLL--SAGSDS--RIRLWDVESGRNTL  345 (446)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-----~l~fs~dg~~l~--sgs~D~--~i~lWd~~~~~~~~  345 (446)
                                                  ....+|.+.+.     .+.|+|||+.|+  +...++  .|.+||+.+++...
T Consensus       300 ----------------------------~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~  351 (719)
T 1z68_A          300 ----------------------------HIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQ  351 (719)
T ss_dssp             ----------------------------EEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEE
T ss_pred             ----------------------------cccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEe
Confidence                                        00001222222     567999998554  444555  46666776654211


Q ss_pred             eeeeEEEeecCCCeEEEEcCCCcEEEEeCC-----CceEEEEeec--Cc-eEEEec----ccccceEEEEEcCCCCEEE-
Q 013274          346 VNFETVRLQTSKPIQLATTQDPAVVFVPCM-----TAVKAFDIWS--GK-TCLTFR----GHYEYVNCCCFSSQDQELY-  412 (446)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~d~~~--~~-~~~~l~----gH~~~v~~~~fSpd~~~lv-  412 (446)
                        +.   ........+.+.++..+++.+..     ...++|.+..  +. ....+.    +|...+..+.||||+++|+ 
T Consensus       352 --lt---~~~~~v~~~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~  426 (719)
T 1z68_A          352 --IT---SGKWEAINIFRVTQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYAL  426 (719)
T ss_dssp             --CS---CSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEE
T ss_pred             --cc---cCceEEEEEEEEeCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEE
Confidence              11   01111122333434445555544     4578888764  32 123333    4777889999999998877 


Q ss_pred             EeeCC--CcEEEeCCCCCC
Q 013274          413 TGGND--RQILVWCPSRHI  429 (446)
Q Consensus       413 tgs~D--~~v~vW~~~~~~  429 (446)
                      +++.+  ..+.+|++.++.
T Consensus       427 ~~s~~~~p~~~l~d~~~g~  445 (719)
T 1z68_A          427 VCYGPGIPISTLHDGRTDQ  445 (719)
T ss_dssp             EECCBSSCEEEEECSSSCC
T ss_pred             EcCCCCCCeEEEEECCCCC
Confidence            45554  468889886554

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.71  E-value=5e-14  Score=129.74  Aligned_cols=251  Identities=8%  Similarity=0.145  Sum_probs=165.9

Q ss_pred             CCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEE
Q 013274           40 SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF  119 (446)
Q Consensus        40 ~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l  119 (446)
                      .+|.....+|++++ +++++++.+.++.|.+||.+.... .          . ........+|...+..+++.+.++.++
T Consensus        26 ~g~~~~p~~v~~~~-~g~l~v~~~~~~~i~~~d~~g~~~-~----------~-~~~~~~~~~~~~~p~~i~~~~~~g~l~   92 (286)
T 1q7f_A           26 EGQFTEPSGVAVNA-QNDIIVADTNNHRIQIFDKEGRFK-F----------Q-FGECGKRDSQLLYPNRVAVVRNSGDII   92 (286)
T ss_dssp             TTCBSCEEEEEECT-TCCEEEEEGGGTEEEEECTTSCEE-E----------E-ECCBSSSTTCBSSEEEEEEETTTTEEE
T ss_pred             CCccCCCceEEECC-CCCEEEEECCCCEEEEECCCCcEE-E----------E-ecccCCCcccccCceEEEEEcCCCeEE
Confidence            35667889999986 578888888999999999762210 0          0 000011124555677777755566666


Q ss_pred             EEEeC-CCeEEEEECCCCeeeEEEecC--CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeee--CCCCCeE
Q 013274          120 VTGSY-DHYVKVWDTNCTRVVMNFKMP--GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS--GHRDGIM  194 (446)
Q Consensus       120 ~s~s~-D~~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~--~h~~~v~  194 (446)
                      ++... ++.|++|| .+++.+..+...  .....+++.+.   ..++++...++.|++||.+ ++....+.  ++...+.
T Consensus        93 v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~---g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~  167 (286)
T 1q7f_A           93 VTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNK---GRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPN  167 (286)
T ss_dssp             EEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTT---SCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEE
T ss_pred             EEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCC---CCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcE
Confidence            66543 89999999 556666655432  24566777663   3467777778899999964 55555553  4556789


Q ss_pred             EEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCC
Q 013274          195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGN  274 (446)
Q Consensus       195 sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (446)
                      .++++|+++ ++++.+.++.|++||... ..+..+.                                            
T Consensus       168 ~i~~~~~g~-l~v~~~~~~~i~~~~~~g-~~~~~~~--------------------------------------------  201 (286)
T 1q7f_A          168 GVVVNDKQE-IFISDNRAHCVKVFNYEG-QYLRQIG--------------------------------------------  201 (286)
T ss_dssp             EEEECSSSE-EEEEEGGGTEEEEEETTC-CEEEEES--------------------------------------------
T ss_pred             EEEECCCCC-EEEEECCCCEEEEEcCCC-CEEEEEc--------------------------------------------
Confidence            999999876 677878889999999743 2211110                                            


Q ss_pred             ceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCC-cEEEEecCcCceeeeeeeEEEe
Q 013274          275 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS-RIRLWDVESGRNTLVNFETVRL  353 (446)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~-~i~lWd~~~~~~~~~~~~~~~~  353 (446)
                                                    ..++...+..|+++++|.++++...++ .|++||... +. +.   ....
T Consensus       202 ------------------------------~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g-~~-~~---~~~~  246 (286)
T 1q7f_A          202 ------------------------------GEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG-QL-IS---ALES  246 (286)
T ss_dssp             ------------------------------CTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS-CE-EE---EEEE
T ss_pred             ------------------------------cCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC-CE-EE---EEcc
Confidence                                          001123467899999999999888786 999998542 21 00   0000


Q ss_pred             ecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCC
Q 013274          354 QTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI  429 (446)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~  429 (446)
                                                             ..+...+.+++|+|||+++++ +.|++|++|+.....
T Consensus       247 ---------------------------------------~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          247 ---------------------------------------KVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA  282 (286)
T ss_dssp             ---------------------------------------SSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred             ---------------------------------------cCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence                                                   011234678999999998888 579999999876543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.68  E-value=3.1e-14  Score=134.17  Aligned_cols=246  Identities=12%  Similarity=0.122  Sum_probs=165.1

Q ss_pred             ccceeEEEeecCCCCEEEEeeCC------------------------CcEEEEEcccCcCCCCCCccccccceEEecccc
Q 013274           43 KGSINSLQVDLTEERYLLSGASD------------------------SSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQH   98 (446)
Q Consensus        43 ~~~v~~l~~s~~~~~~l~s~s~D------------------------g~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (446)
                      .+.+.+|++++ +++++++.+.+                        ++|.+||.+++....            ..    
T Consensus        23 l~~v~~va~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~------------~~----   85 (329)
T 3fvz_A           23 PGQVSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQ------------SS----   85 (329)
T ss_dssp             CSCEEEEEECT-TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEE------------EE----
T ss_pred             cCCceEEEECC-CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEe------------cc----
Confidence            47799999997 57888888888                        478889876554210            00    


Q ss_pred             ccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCe-eeEEEec----------CCceEEeeeccCCCCceEEEEee
Q 013274           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR-VVMNFKM----------PGKVYRTAMSPLAASHMLIAAGT  167 (446)
Q Consensus        99 ~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~-~~~~~~~----------~~~~~~~~~~~~~~~~~~lasgs  167 (446)
                      ..++-..+..+++.+ ++.++++...++.|++||.+... .+..+..          ......+++.+.  +..++++.+
T Consensus        86 ~~~~~~~p~gia~d~-~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~--~g~lyv~d~  162 (329)
T 3fvz_A           86 GKNLFYLPHGLSIDT-DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPS--TGAVFVSDG  162 (329)
T ss_dssp             CTTTCSSEEEEEECT-TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTT--TCCEEEEEC
T ss_pred             CCCccCCceEEEECC-CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCC--CCeEEEEeC
Confidence            013334566667765 77788888889999999986542 4444421          113566777662  234667765


Q ss_pred             -CCCcEEEEeCCCCceeeeeeC----------CCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccc
Q 013274          168 -EDVQVRLCDIASGAISQTLSG----------HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQL  236 (446)
Q Consensus       168 -~d~~v~vwd~~~~~~~~~l~~----------h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~  236 (446)
                       .++.|++|| .++..+..+..          +-.....|+++|++..++++...++.|++||..+++.+..+..     
T Consensus       163 ~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~-----  236 (329)
T 3fvz_A          163 YCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKH-----  236 (329)
T ss_dssp             SSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECC-----
T ss_pred             CCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEec-----
Confidence             689999999 56666666642          2234789999998556788888899999999876655443310     


Q ss_pred             cCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEE
Q 013274          237 GRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLK  316 (446)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  316 (446)
                                                                                           ..+...+.+++
T Consensus       237 ---------------------------------------------------------------------~~~~~~~~~~~  247 (329)
T 3fvz_A          237 ---------------------------------------------------------------------ASFGRNVFAIS  247 (329)
T ss_dssp             ---------------------------------------------------------------------TTTTTCEEEEE
T ss_pred             ---------------------------------------------------------------------cccCCCcceee
Confidence                                                                                 01122355677


Q ss_pred             Ecc------CCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEE
Q 013274          317 VTE------DGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCL  390 (446)
Q Consensus       317 fs~------dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  390 (446)
                      |+|      +|..+++...+.+|++||+.+++                                             .+.
T Consensus       248 ~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~---------------------------------------------~~~  282 (329)
T 3fvz_A          248 YIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGE---------------------------------------------IID  282 (329)
T ss_dssp             EETTEEEEEECCCCTTCSCCCCEEEEETTTCC---------------------------------------------EEE
T ss_pred             ecCCEEEEeCCCEEeccCCCcEEEEEEcCCCe---------------------------------------------EEE
Confidence            777      33333334444567777765543                                             222


Q ss_pred             Ee---cccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC
Q 013274          391 TF---RGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH  428 (446)
Q Consensus       391 ~l---~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~  428 (446)
                      .+   .+|...+..|+|+|||.++++...++.|++|+++..
T Consensus       283 ~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          283 VFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             EECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred             EEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence            22   356678899999999999999999999999998754

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.67  E-value=1.4e-14  Score=136.86  Aligned_cols=299  Identities=12%  Similarity=0.103  Sum_probs=167.7

Q ss_pred             EEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE-EEEEeCCCe
Q 013274           49 LQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL-FVTGSYDHY  127 (446)
Q Consensus        49 l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~-l~s~s~D~~  127 (446)
                      +++++ ++.++++++.|++|++||+.+++...            ...    .+....+..+.++| ++++ +++++.++.
T Consensus         5 ~~~~~-~~~~~v~~~~~~~v~~~d~~~~~~~~------------~~~----~~~~~~~~~~~~s~-dg~~~~v~~~~~~~   66 (349)
T 1jmx_B            5 PALKA-GHEYMIVTNYPNNLHVVDVASDTVYK------------SCV----MPDKFGPGTAMMAP-DNRTAYVLNNHYGD   66 (349)
T ss_dssp             CCCCT-TCEEEEEEETTTEEEEEETTTTEEEE------------EEE----CSSCCSSCEEEECT-TSSEEEEEETTTTE
T ss_pred             ccccC-CCEEEEEeCCCCeEEEEECCCCcEEE------------EEe----cCCCCCCceeEECC-CCCEEEEEeCCCCc
Confidence            34553 67899999999999999997654210            000    01111344667776 6664 556678899


Q ss_pred             EEEEECCCCeeeEEEecCCc-------eEEeeeccCCCCceEEEEeeCC------------CcEEEEeCCCCcee---ee
Q 013274          128 VKVWDTNCTRVVMNFKMPGK-------VYRTAMSPLAASHMLIAAGTED------------VQVRLCDIASGAIS---QT  185 (446)
Q Consensus       128 i~iWd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~lasgs~d------------~~v~vwd~~~~~~~---~~  185 (446)
                      |.+||+.+++.+..+.....       +..++++++   ..++++++.+            +.|.+||+++++..   ..
T Consensus        67 i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spd---g~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  143 (349)
T 1jmx_B           67 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPD---GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT  143 (349)
T ss_dssp             EEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTT---SSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE
T ss_pred             EEEEeCCCCcEEEEEEcccccccccccccceEECCC---CCEEEEEcccccccccccccCCCeEEEEECCCccccceeee
Confidence            99999999988877765331       445667764   3356666544            89999999986433   33


Q ss_pred             eeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCC-
Q 013274          186 LSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPR-  264 (446)
Q Consensus       186 l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  264 (446)
                      +. +...+.+++|+|+++ +++ ++  +.|.+||+.+++....+.........   ..      .  .   ........ 
T Consensus       144 ~~-~~~~~~~~~~s~dg~-l~~-~~--~~i~~~d~~~~~~~~~~~~~~~~~~~---~~------~--~---~~~~~~~~~  204 (349)
T 1jmx_B          144 FP-MPRQVYLMRAADDGS-LYV-AG--PDIYKMDVKTGKYTVALPLRNWNRKG---YS------A--P---DVLYFWPHQ  204 (349)
T ss_dssp             EE-CCSSCCCEEECTTSC-EEE-ES--SSEEEECTTTCCEEEEECSTTCCCTT---BC------C--C---BCCCCCCCC
T ss_pred             cc-CCCcccceeECCCCc-EEE-cc--CcEEEEeCCCCceeccccccccCCcc---cc------C--c---cceeeecCC
Confidence            43 334688999999998 555 33  34999999888766554321100000   00      0  0   00000000 


Q ss_pred             CccccccCCCceeecccceee-cC-----CccccccCCCcccccccccccccCeEEEEEcc-CCCEEEEeecCCcEEEEe
Q 013274          265 APQKRSANGNGVRQSSVGRIP-AK-----GSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE-DGMYLLSAGSDSRIRLWD  337 (446)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~sgs~D~~i~lWd  337 (446)
                      ...........+...+.+... ..     ..+......+.+... ....+...+..++|+| ||++|+++  ++.|.+||
T Consensus       205 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d  281 (349)
T 1jmx_B          205 SPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQ-EFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYD  281 (349)
T ss_dssp             CTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEE-EEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEE
T ss_pred             CcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEec-ccccCCCcceeeEecCCCCCEEEEE--cCeEEEEE
Confidence            000000000000000000000 00     000000000000000 0112334578899999 99999887  88999999


Q ss_pred             cCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeC-CCceEEEEeecCceEEEeccc
Q 013274          338 VESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGH  395 (446)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~l~gH  395 (446)
                      +.+++...    ... ....+..+++++++..+++.. ...+.+||+.+++.+..+..+
T Consensus       282 ~~~~~~~~----~~~-~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          282 LKQRKLIK----AAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             TTTTEEEE----EEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             CccCeEEE----EEc-CCCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence            98865311    111 123456788999987776654 367999999998887777654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.67  E-value=4.5e-15  Score=155.51  Aligned_cols=290  Identities=12%  Similarity=0.143  Sum_probs=179.5

Q ss_pred             cceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEe
Q 013274           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS  123 (446)
Q Consensus        44 ~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s  123 (446)
                      ....+++|+| ++.+|+++  |++|++||++++...            .++.......+........++| |+++|+.++
T Consensus        17 ~~~~~~~w~~-dg~~~~~~--~~~i~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~Sp-dg~~l~~~~   80 (740)
T 4a5s_A           17 LKLYSLRWIS-DHEYLYKQ--ENNILVFNAEYGNSS------------VFLENSTFDEFGHSINDYSISP-DGQFILLEY   80 (740)
T ss_dssp             CCCCCEEECS-SSEEEEEE--TTEEEEEETTTCCEE------------EEECTTTTTTCCSCCCEEEECT-TSSEEEEEE
T ss_pred             ccccccEECC-CCcEEEEc--CCcEEEEECCCCceE------------EEEechhhhhhcccccceEECC-CCCEEEEEE
Confidence            3467899986 57888886  999999999876521            1111111112222233355666 899999988


Q ss_pred             CC---------CeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceee-eeeCCCCCe
Q 013274          124 YD---------HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ-TLSGHRDGI  193 (446)
Q Consensus       124 ~D---------~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~-~l~~h~~~v  193 (446)
                      .|         +.+.+||+.+++........+.+...+++|++.   .||.++ |+.|++||+.++...+ +..++...+
T Consensus        81 ~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~---~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~  156 (740)
T 4a5s_A           81 NYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGH---KLAYVW-NNDIYVKIEPNLPSYRITWTGKEDII  156 (740)
T ss_dssp             EEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTT---CEEEEE-TTEEEEESSTTSCCEECCSCCBTTTE
T ss_pred             CCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCC---EEEEEE-CCeEEEEECCCCceEEEcCCCCccce
Confidence            87         455699999988654333456678888998653   566664 7899999999886543 223333322


Q ss_pred             -----------------EEEEEecCCCeEEEEeeCC-CcEEEEEccCCceeEEeecccccccCCCcccccceeecccccc
Q 013274          194 -----------------MTVEWSTSSEWILVTGGCD-GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSA  255 (446)
Q Consensus       194 -----------------~sv~~s~~~~~~l~S~s~D-g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (446)
                                       .++.||||++. |+.++.| +.+++|++.....       .                      
T Consensus       157 ~~g~~~~v~~ee~~~~~~~~~wSpDg~~-la~~~~d~~~v~~~~~~~~~~-------~----------------------  206 (740)
T 4a5s_A          157 YNGITDWVYEEEVFSAYSALWWSPNGTF-LAYAQFNDTEVPLIEYSFYSD-------E----------------------  206 (740)
T ss_dssp             EESBCCHHHHHHTSSSSBCEEECTTSSE-EEEEEEECTTCCEEEEEECCS-------T----------------------
T ss_pred             ecCcccccccchhcCCCcceEECCCCCE-EEEEEEcccCCceEEEEeecC-------C----------------------
Confidence                             35899999997 4565544 4488887642100       0                      


Q ss_pred             CCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEE
Q 013274          256 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRL  335 (446)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~l  335 (446)
                                                                        ..+...+..+.|.+.|..    ....+|++
T Consensus       207 --------------------------------------------------~~~~~~~~~~~yp~~G~~----~~~~~l~v  232 (740)
T 4a5s_A          207 --------------------------------------------------SLQYPKTVRVPYPKAGAV----NPTVKFFV  232 (740)
T ss_dssp             --------------------------------------------------TCSSCEEEEEECCBTTSC----CCEEEEEE
T ss_pred             --------------------------------------------------CCCCCcceeecCCCCcCc----CCeeEEEE
Confidence                                                              011223455666666643    12236899


Q ss_pred             EecCc---Cce-eeeeeeEE-E--eecCCCeEEEEcCCCcEEEEeC--C---CceEEEEeecCc----e--EEEe--ccc
Q 013274          336 WDVES---GRN-TLVNFETV-R--LQTSKPIQLATTQDPAVVFVPC--M---TAVKAFDIWSGK----T--CLTF--RGH  395 (446)
Q Consensus       336 Wd~~~---~~~-~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~d~~~~~----~--~~~l--~gH  395 (446)
                      ||+.+   +.. ....+... .  ........++++||+..++...  .   ..+.+||+.+++    +  ...+  .+|
T Consensus       233 ~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~  312 (740)
T 4a5s_A          233 VNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMST  312 (740)
T ss_dssp             EETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECS
T ss_pred             EECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccC
Confidence            99998   621 01111000 0  0112234577889987554431  1   258899999887    2  2223  567


Q ss_pred             ccceE-----EEEEcCCCCEEE-EeeCC---CcEEEeCCCCCCCCCcCCCc
Q 013274          396 YEYVN-----CCCFSSQDQELY-TGGND---RQILVWCPSRHISDGVDAGP  437 (446)
Q Consensus       396 ~~~v~-----~~~fSpd~~~lv-tgs~D---~~v~vW~~~~~~~~~~~~~~  437 (446)
                      ...|.     ..+|||||+.|+ ..|.+   ..|.+|++++.....+-.|.
T Consensus       313 ~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~  363 (740)
T 4a5s_A          313 TGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGT  363 (740)
T ss_dssp             SSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSS
T ss_pred             CceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCC
Confidence            77766     789999999887 66643   45888888877666565554

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.66  E-value=2.9e-14  Score=136.17  Aligned_cols=266  Identities=12%  Similarity=0.057  Sum_probs=172.3

Q ss_pred             CCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEe----------CCCeEEEEEC
Q 013274           64 SDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS----------YDHYVKVWDT  133 (446)
Q Consensus        64 ~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s----------~D~~i~iWd~  133 (446)
                      .|++|.+||..+++...            .     ...+...  .+.++| ++++++++.          .|++|.+||+
T Consensus        29 ~d~~v~v~D~~t~~~~~------------~-----i~~g~~p--~i~~sp-dg~~lyv~~~~~~~~~~g~~~~~v~v~d~   88 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLG------------M-----VPTAFNG--HVQVSN-DGKKIYTMTTYHERITRGKRSDVVEVWDA   88 (361)
T ss_dssp             GGCEEEEEETTTCCEEE------------E-----EECCEEE--EEEECT-TSSEEEEEEEEETTSSSSCEEEEEEEEET
T ss_pred             ccCeEEEEECCCCeEEE------------E-----ecCCCCC--ceEECC-CCCEEEEEEecccccccCCCCCEEEEEEC
Confidence            57899999987654210            0     0112222  456665 888888776          3678999999


Q ss_pred             CCCeeeEEEecC-------CceEEeeeccCCCCceEEEEee-C-CCcEEEEeCCCCceeee-eeCCCCCeEEEEEecCCC
Q 013274          134 NCTRVVMNFKMP-------GKVYRTAMSPLAASHMLIAAGT-E-DVQVRLCDIASGAISQT-LSGHRDGIMTVEWSTSSE  203 (446)
Q Consensus       134 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~lasgs-~-d~~v~vwd~~~~~~~~~-l~~h~~~v~sv~~s~~~~  203 (446)
                      .+.+.+..+...       .....++++++.   .+|+++. . ++.|.+||+++++.+.. +..  .....+.+.|+++
T Consensus        89 ~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg---~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~--~~~~~v~~~p~~~  163 (361)
T 2oiz_A           89 DKLTFEKEISLPPKRVQGLNYDGLFRQTTDG---KFIVLQNASPATSIGIVDVAKGDYVEDVTAA--AGCWSVIPQPNRP  163 (361)
T ss_dssp             TTCCEEEEEEECTTBCCBCCCGGGEEECTTS---SEEEEEEESSSEEEEEEETTTTEEEEEEGGG--TTEEEEEECTTSS
T ss_pred             cCCcEEEEEEcCccccccCCCcceEEECCCC---CEEEEECCCCCCeEEEEECCCCcEEEEEecC--CCcceeEEcCCCC
Confidence            998888777643       123345666653   3455544 3 68999999999988777 542  2224466778775


Q ss_pred             eEEEEeeCCCcEEEEEccC-CceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccc
Q 013274          204 WILVTGGCDGAIRFWDIRR-AGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVG  282 (446)
Q Consensus       204 ~~l~S~s~Dg~I~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (446)
                      ..+++.+.||.+.+|++.. ++.......  ..                                               
T Consensus       164 ~~~~~~~~dg~~~~v~~~~~g~~~~~~~~--~~-----------------------------------------------  194 (361)
T 2oiz_A          164 RSFMTICGDGGLLTINLGEDGKVASQSRS--KQ-----------------------------------------------  194 (361)
T ss_dssp             SEEEEEETTSSEEEEEECTTSSEEEEEEC--CC-----------------------------------------------
T ss_pred             eeEEEECCCCcEEEEEECCCCcEeeeccc--cc-----------------------------------------------
Confidence            5678999999999999864 222111000  00                                               


Q ss_pred             eeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeee-eeEEE-------ee
Q 013274          283 RIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVN-FETVR-------LQ  354 (446)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~-~~~~~-------~~  354 (446)
                                .+.           .+..++ .+.+++++..++..+.+++|.++|+......... +....       ..
T Consensus       195 ----------~~~-----------~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  252 (361)
T 2oiz_A          195 ----------MFS-----------VKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWV  252 (361)
T ss_dssp             ----------CSC-----------TTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCE
T ss_pred             ----------eEc-----------CCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccc
Confidence                      000           000011 1223567766666778889999998765422211 00000       01


Q ss_pred             cCCCeEEEEcCCCcEEEEeC------------CCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEE
Q 013274          355 TSKPIQLATTQDPAVVFVPC------------MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILV  422 (446)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~v  422 (446)
                      ......+++++++..+++..            ...+.+||+.+++.+.++..|.  +.+++|||||++|++++. ++|.|
T Consensus       253 p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v  329 (361)
T 2oiz_A          253 PGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNV  329 (361)
T ss_dssp             ECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEE
T ss_pred             cCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEE
Confidence            12222367888887777653            2368899999999999999888  999999999999998887 99999


Q ss_pred             eCCCCC
Q 013274          423 WCPSRH  428 (446)
Q Consensus       423 W~~~~~  428 (446)
                      ||+.+.
T Consensus       330 ~D~~t~  335 (361)
T 2oiz_A          330 YDISQP  335 (361)
T ss_dssp             EECSSS
T ss_pred             EECCCC
Confidence            999877

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.64  E-value=1.5e-13  Score=131.48  Aligned_cols=257  Identities=11%  Similarity=0.081  Sum_probs=154.3

Q ss_pred             CccceeEEEeecCCCCEEEEeeCCCcEEEEEcc-cCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE--
Q 013274           42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQ-RATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL--  118 (446)
Q Consensus        42 H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~--  118 (446)
                      +...+..++|+| ++++|++++.+ +|.+||+. ++...            .... ....++   +..+.++| ++++  
T Consensus        38 ~~~~~~~~a~sp-dg~~l~~~~~~-~v~~~~~~~~g~~~------------~~~~-~~~~g~---~~~~~~sp-dg~~l~   98 (365)
T 1jof_A           38 QDEPISWMTFDH-ERKNIYGAAMK-KWSSFAVKSPTEIV------------HEAS-HPIGGH---PRANDADT-NTRAIF   98 (365)
T ss_dssp             TTCCCSEEEECT-TSSEEEEEEBT-EEEEEEEEETTEEE------------EEEE-EECCSS---GGGGCTTS-CCEEEE
T ss_pred             CCCCCcEEEECC-CCCEEEEEccc-eEEEEEECCCCCEE------------EeeE-eecCCC---CccEEECC-CCCEEE
Confidence            445678999997 67888888888 99999986 43210            0000 000111   22234454 7773  


Q ss_pred             EEEEe-------------CCCeEEEEECC-CCeeeEEEe-----cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCC-
Q 013274          119 FVTGS-------------YDHYVKVWDTN-CTRVVMNFK-----MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA-  178 (446)
Q Consensus       119 l~s~s-------------~D~~i~iWd~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~-  178 (446)
                      +++++             .++++.+|+++ .++....+.     ....+..++++|+..  .++++...++.|++||++ 
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~--~l~~~~~~~~~v~~~~~~~  176 (365)
T 1jof_A           99 LLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET--YLYSADLTANKLWTHRKLA  176 (365)
T ss_dssp             EEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS--EEEEEETTTTEEEEEEECT
T ss_pred             EEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC--EEEEEcCCCCEEEEEEECC
Confidence            55653             68999999997 465543333     234577888888642  233333446799999998 


Q ss_pred             CCcee--eeee--CCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccC--CceeEEeecccccccCCCcccccceeeccc
Q 013274          179 SGAIS--QTLS--GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR--AGCFRVLDQSQSQLGRRPPLLKRKVSISKS  252 (446)
Q Consensus       179 ~~~~~--~~l~--~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (446)
                      +++..  ..+.  .|...+..++|+|++++++++...+++|.+|++..  +.....+..    +..              
T Consensus       177 ~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~----~~~--------------  238 (365)
T 1jof_A          177 SGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHS----FPL--------------  238 (365)
T ss_dssp             TSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE----EES--------------
T ss_pred             CCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccce----EEc--------------
Confidence            77643  3343  34667899999999987554444578999998752  221100000    000              


Q ss_pred             cccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCccccccccccccc------CeEEEE-EccCCCEEE
Q 013274          253 LSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYG------AVTGLK-VTEDGMYLL  325 (446)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~------~v~~l~-fs~dg~~l~  325 (446)
                                                               +..       ...+|..      .+..++ |+|||++|+
T Consensus       239 -----------------------------------------~~~-------~~~g~~~~~~~~~~~~~i~~~spdG~~l~  270 (365)
T 1jof_A          239 -----------------------------------------IPP-------GIPDRDPETGKGLYRADVCALTFSGKYMF  270 (365)
T ss_dssp             -----------------------------------------SCT-------TCCCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred             -----------------------------------------CCC-------CcCCcccccccccccccEEEECCCCCEEE
Confidence                                                     000       0001111      378899 999999887


Q ss_pred             EeecCC------cEEEEecC-cCceeeeeeeEEEeecCCCeEEEEcC---CCcEEEEeCC--CceEEEEeecC
Q 013274          326 SAGSDS------RIRLWDVE-SGRNTLVNFETVRLQTSKPIQLATTQ---DPAVVFVPCM--TAVKAFDIWSG  386 (446)
Q Consensus       326 sgs~D~------~i~lWd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~d~~~~  386 (446)
                      ++..+.      +|++|++. +++.... ..........+..++++|   ++..++++..  +.+.+|++...
T Consensus       271 v~~~~~~~~~~~~i~v~~~~~~g~~~~~-~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          271 ASSRANKFELQGYIAGFKLRDCGSIEKQ-LFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEEESSTTSCCEEEEEEECTTSCEEEE-EEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EECCCCCCCCCCeEEEEEECCCCCEEEe-eeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            665432      89999996 4432111 001111122345567888   7888888754  57899998765

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.62  E-value=1.4e-13  Score=142.13  Aligned_cols=290  Identities=10%  Similarity=-0.002  Sum_probs=176.3

Q ss_pred             eCCCccceeEEEeecCCCCEEEEe--eCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEe---------
Q 013274           39 VSPHKGSINSLQVDLTEERYLLSG--ASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAIS---------  107 (446)
Q Consensus        39 ~~~H~~~v~~l~~s~~~~~~l~s~--s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~---------  107 (446)
                      +.+|...|..++|++ +.-++++.  +.|+...||....+...   ..              ..+|...+.         
T Consensus        19 ~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~--------------l~~~~~~~~~~~~~~~~~   80 (662)
T 3azo_A           19 VASRSGRPACVGAVG-DEVWWVAPRPAEAGRATLVRRRADGAE---ES--------------ALPAPWNVRNRVFEYSGF   80 (662)
T ss_dssp             HHHTCSCCEEEEEET-TEEEEEEEETTTTTEEEEEEECTTSCE---EE--------------SSCTTCCBCCCGGGTCCC
T ss_pred             HhhcCCccceeEEcC-CeEEEEecCcccCCcEEEEEECCCCCc---ce--------------eCCCCccccccccccCCc
Confidence            457889999999985 45566666  66889999986322110   00              112222222         


Q ss_pred             EEEEe-ecCCcE-EEEEeC-CCeEEEEECC--C-CeeeEEEec------CCceEEeeeccCCCCceEEEEeeCC------
Q 013274          108 SAIWY-PVDTGL-FVTGSY-DHYVKVWDTN--C-TRVVMNFKM------PGKVYRTAMSPLAASHMLIAAGTED------  169 (446)
Q Consensus       108 ~~~~~-~~~~~~-l~s~s~-D~~i~iWd~~--~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~lasgs~d------  169 (446)
                      ...++ ++|+++ |+.++. +..|.+|++.  . +.. ..+..      ......++++|++   ..|++++.+      
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~-~~l~~~~~~~~~~~~~~~~~spDg---~~l~~~~~~~~~~~~  156 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVP-RPLTPVSAVGGGLRWADPVLLPER---GEVWCMAEEFTGEGP  156 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCC-EECSCCCCSTTCEEEEEEEEETTT---TEEEEEEEEECSSST
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCC-EeccCCccCCCCccccCcEECCCC---CEEEEEEecccCCCC
Confidence            34455 247777 665544 5667777765  2 432 22322      2345667788754   356666655      


Q ss_pred             ----CcEEEEeCCC------Cceeeeee-CCCCCeEEEEEecCCCeEEEEeeCC--------CcEEEEEcc-CCc--eeE
Q 013274          170 ----VQVRLCDIAS------GAISQTLS-GHRDGIMTVEWSTSSEWILVTGGCD--------GAIRFWDIR-RAG--CFR  227 (446)
Q Consensus       170 ----~~v~vwd~~~------~~~~~~l~-~h~~~v~sv~~s~~~~~~l~S~s~D--------g~I~iWd~~-~~~--~~~  227 (446)
                          ..|++||+++      +. ...+. .+...+.+++|+|+++++ +.++.+        ..|++||+. ++.  ...
T Consensus       157 ~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~SpDG~~l-a~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~  234 (662)
T 3azo_A          157 SDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRLSPDGRQA-VWLAWDHPRMPWEGTELKTARVTEDGRFADTR  234 (662)
T ss_dssp             TCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEECTTSSEE-EEEEECTTCCTTTCEEEEEEEECTTSCEEEEE
T ss_pred             CCceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceECCCCCEE-EEEECCCCCCCCCCcEEEEEEECCCCcccccE
Confidence                5899999988      54 34555 666788899999999974 555544        379999987 331  110


Q ss_pred             EeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccc
Q 013274          228 VLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATA  307 (446)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (446)
                      .+                                                                           ..+
T Consensus       235 ~l---------------------------------------------------------------------------~~~  239 (662)
T 3azo_A          235 TL---------------------------------------------------------------------------LGG  239 (662)
T ss_dssp             EE---------------------------------------------------------------------------EEE
T ss_pred             Ee---------------------------------------------------------------------------CCC
Confidence            00                                                                           012


Q ss_pred             cccCeEEEEEccCCCEEEEeecCC--cEEEEecCcCceeeeeeeEEEeecC------CCeEEEEcCCCcEEEEeCCCceE
Q 013274          308 HYGAVTGLKVTEDGMYLLSAGSDS--RIRLWDVESGRNTLVNFETVRLQTS------KPIQLATTQDPAVVFVPCMTAVK  379 (446)
Q Consensus       308 h~~~v~~l~fs~dg~~l~sgs~D~--~i~lWd~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~  379 (446)
                      |...+..+.|+|||+++++++.|+  .|.+||+.+++...  +........      ....+++++++.++++......+
T Consensus       240 ~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~--l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~  317 (662)
T 3azo_A          240 PEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQ--LCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAV  317 (662)
T ss_dssp             TTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEE--SSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCE
T ss_pred             CCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceee--cccccccccCccccccCceEeEeCCCEEEEEEEcCccE
Confidence            345688899999999888888888  55666665554221  111000000      02346777888888776546678


Q ss_pred             EEEeec-CceEEEecccccceEEE-EEcCCCCEEEEeeCCCcEEEe--CCCCCC
Q 013274          380 AFDIWS-GKTCLTFRGHYEYVNCC-CFSSQDQELYTGGNDRQILVW--CPSRHI  429 (446)
Q Consensus       380 ~~d~~~-~~~~~~l~gH~~~v~~~-~fSpd~~~lvtgs~D~~v~vW--~~~~~~  429 (446)
                      +|.+.. +.....+..|...+..+ +++++.-++++++.+....||  ++.+..
T Consensus       318 l~~~d~~~~~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~  371 (662)
T 3azo_A          318 LGILDPESGELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR  371 (662)
T ss_dssp             EEEEETTTTEEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             EEEEECCCCcEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            886542 34468888898888877 554444445566777666666  554443

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.62  E-value=2.6e-14  Score=137.58  Aligned_cols=278  Identities=9%  Similarity=-0.006  Sum_probs=165.6

Q ss_pred             cceeEEEeecCCCCEEEEeeC-CC--cEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEE
Q 013274           44 GSINSLQVDLTEERYLLSGAS-DS--SVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV  120 (446)
Q Consensus        44 ~~v~~l~~s~~~~~~l~s~s~-Dg--~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~  120 (446)
                      ..+.+++|+| +|++|+..+. ++  .|.+||+.++....             +    ..++......+.|+| ++++|+
T Consensus        36 ~~~~~~~~Sp-dG~~l~~~~~~~g~~~l~~~d~~~~~~~~-------------l----~~~~~~~~~~~~~sp-dg~~l~   96 (396)
T 3c5m_A           36 NYFYQKCFTQ-DGKKLLFAGDFDGNRNYYLLNLETQQAVQ-------------L----TEGKGDNTFGGFIST-DERAFF   96 (396)
T ss_dssp             CCTTSCCBCT-TSCEEEEEECTTSSCEEEEEETTTTEEEE-------------C----CCSSCBCTTTCEECT-TSSEEE
T ss_pred             eeeecCcCCC-CCCEEEEEEecCCCceEEEEECCCCcEEE-------------e----ecCCCCccccceECC-CCCEEE
Confidence            3478889997 5777766644 33  67788877643210             0    011111111234565 889999


Q ss_pred             EEeCCCeEEEEECCCCeeeEEEecCCce-E---Eeeec-------------cCCCCceEEEEe-----eCCCcEEEEeCC
Q 013274          121 TGSYDHYVKVWDTNCTRVVMNFKMPGKV-Y---RTAMS-------------PLAASHMLIAAG-----TEDVQVRLCDIA  178 (446)
Q Consensus       121 s~s~D~~i~iWd~~~~~~~~~~~~~~~~-~---~~~~~-------------~~~~~~~~lasg-----s~d~~v~vwd~~  178 (446)
                      .++.++.|.+||+.+++.......+... .   .+.+.             ...++...++..     ..+..|++||+.
T Consensus        97 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~  176 (396)
T 3c5m_A           97 YVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIE  176 (396)
T ss_dssp             EEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETT
T ss_pred             EEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECC
Confidence            9999999999999988765544432221 1   11111             111111222221     345689999999


Q ss_pred             CCceeeeeeCCCCCeEEEEEec-CCCeEEEEeeCC------CcEEEEEccCCceeEEeecccccccCCCcccccceeecc
Q 013274          179 SGAISQTLSGHRDGIMTVEWST-SSEWILVTGGCD------GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISK  251 (446)
Q Consensus       179 ~~~~~~~l~~h~~~v~sv~~s~-~~~~~l~S~s~D------g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (446)
                      +++..... .+...+..+.|+| +++.+ +..+.+      ..|.+||+..+.. +.+                      
T Consensus       177 ~g~~~~~~-~~~~~~~~~~~sp~dg~~l-~~~~~~~~~~~~~~l~~~d~~~~~~-~~l----------------------  231 (396)
T 3c5m_A          177 TGELEVIH-QDTAWLGHPIYRPFDDSTV-GFCHEGPHDLVDARMWLVNEDGSNV-RKI----------------------  231 (396)
T ss_dssp             TCCEEEEE-EESSCEEEEEEETTEEEEE-EEEECSCSSSCSCCCEEEETTSCCC-EES----------------------
T ss_pred             CCcEEeec-cCCcccccceECCCCCCEE-EEEecCCCCCCCceEEEEECCCCce-eEe----------------------
Confidence            88755443 5677889999999 66654 333333      3566676643210 000                      


Q ss_pred             ccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCccccccccccc-ccCeEEEEEccCCCEEEEeecC
Q 013274          252 SLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAH-YGAVTGLKVTEDGMYLLSAGSD  330 (446)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~fs~dg~~l~sgs~D  330 (446)
                                                                           .... ...+..++|+|||++|+..+.+
T Consensus       232 -----------------------------------------------------~~~~~~~~~~~~~~spdg~~l~~~~~~  258 (396)
T 3c5m_A          232 -----------------------------------------------------KEHAEGESCTHEFWIPDGSAMAYVSYF  258 (396)
T ss_dssp             -----------------------------------------------------SCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred             -----------------------------------------------------eccCCCccccceEECCCCCEEEEEecC
Confidence                                                                 0000 1136778999999988777554


Q ss_pred             -----CcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcC-CCcEEEEeC-----------------CCceEEEEeecCc
Q 013274          331 -----SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQ-DPAVVFVPC-----------------MTAVKAFDIWSGK  387 (446)
Q Consensus       331 -----~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----------------~~~~~~~d~~~~~  387 (446)
                           +.|++||+.+++....  ...   . . ....+++ ++..++...                 ...+.+||+.+++
T Consensus       259 ~~~~~~~l~~~d~~~g~~~~l--~~~---~-~-~~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~  331 (396)
T 3c5m_A          259 KGQTDRVIYKANPETLENEEV--MVM---P-P-CSHLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKS  331 (396)
T ss_dssp             TTTCCEEEEEECTTTCCEEEE--EEC---C-S-EEEEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTB
T ss_pred             CCCccceEEEEECCCCCeEEe--eeC---C-C-CCCCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCc
Confidence                 4499999988753221  111   1 1 1267777 887766532                 2467888887776


Q ss_pred             eEEEeccccc-----------ceEEEEEcCCCCEEEEeeC-CCcEEEeCCC
Q 013274          388 TCLTFRGHYE-----------YVNCCCFSSQDQELYTGGN-DRQILVWCPS  426 (446)
Q Consensus       388 ~~~~l~gH~~-----------~v~~~~fSpd~~~lvtgs~-D~~v~vW~~~  426 (446)
                      . ..+..|..           .+..++|||||++|+.++. ++...||..+
T Consensus       332 ~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~  381 (396)
T 3c5m_A          332 A-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD  381 (396)
T ss_dssp             C-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             e-EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence            4 45555654           2567899999999887664 6677777543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.57  E-value=1.4e-12  Score=122.81  Aligned_cols=274  Identities=9%  Similarity=0.004  Sum_probs=179.8

Q ss_pred             CCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEe
Q 013274           64 SDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK  143 (446)
Q Consensus        64 ~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~  143 (446)
                      .+++|.+||.++++....   +      .....  ..........+.+.  ++.++++...+++|.+||..+++.+.++.
T Consensus        15 ~~~~l~~~d~~t~~~~~~---i------~~~~n--~~~lg~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i~   81 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENE---V------FYRAN--GFKLGDVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRIT   81 (328)
T ss_dssp             CCBEEEEEETTTTEEECS---H------HHHHH--SSCCBSCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEEE
T ss_pred             CCceEEEEECCCCEEhhh---h------Hhhhc--CcccCccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEcC
Confidence            489999999987653110   0      00000  00111123344442  46677777778999999999999988886


Q ss_pred             cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCC-----CCeEEEEEecCCCeEEEEee-CCCcEEE
Q 013274          144 MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHR-----DGIMTVEWSTSSEWILVTGG-CDGAIRF  217 (446)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~-----~~v~sv~~s~~~~~~l~S~s-~Dg~I~i  217 (446)
                      .......+++++.   ..++++...++.|.+||+++++....+....     .....+++ .+ +.++++.. .+++|.+
T Consensus        82 ~~~~p~~i~~~~~---g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~-~~lyv~~~~~~~~v~v  156 (328)
T 3dsm_A           82 GFTSPRYIHFLSD---EKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YG-KYVYVNCWSYQNRILK  156 (328)
T ss_dssp             CCSSEEEEEEEET---TEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ET-TEEEEEECTTCCEEEE
T ss_pred             CCCCCcEEEEeCC---CeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-EC-CEEEEEcCCCCCEEEE
Confidence            5556677777653   3455555478999999999998877665332     14456666 33 45566654 4889999


Q ss_pred             EEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCC
Q 013274          218 WDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPG  297 (446)
Q Consensus       218 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (446)
                      +|+.+++....+..                                                                  
T Consensus       157 iD~~t~~~~~~i~~------------------------------------------------------------------  170 (328)
T 3dsm_A          157 IDTETDKVVDELTI------------------------------------------------------------------  170 (328)
T ss_dssp             EETTTTEEEEEEEC------------------------------------------------------------------
T ss_pred             EECCCCeEEEEEEc------------------------------------------------------------------
Confidence            99987654433210                                                                  


Q ss_pred             cccccccccccccCeEEEEEccCCCEEEEeecC----------CcEEEEecCcCceeeeeeeEEEee-cCCCeEEEEcCC
Q 013274          298 MLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD----------SRIRLWDVESGRNTLVNFETVRLQ-TSKPIQLATTQD  366 (446)
Q Consensus       298 ~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D----------~~i~lWd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  366 (446)
                                 ......+.++|+|+++++...+          +.|.++|..+++..    ...... ...+..++++++
T Consensus       171 -----------g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~----~~~~~~~g~~p~~la~~~d  235 (328)
T 3dsm_A          171 -----------GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVE----KQFKFKLGDWPSEVQLNGT  235 (328)
T ss_dssp             -----------SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEE----EEEECCTTCCCEEEEECTT
T ss_pred             -----------CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEE----EEEecCCCCCceeEEEecC
Confidence                       0012346788999988777655          78999999876421    111211 125778899998


Q ss_pred             CcEEEEeCCCceEEEEeecCceEE--EecccccceEEEEEcC-CCCEEEEe----eCCCcEEEeCCCCCCCCCcCCCc
Q 013274          367 PAVVFVPCMTAVKAFDIWSGKTCL--TFRGHYEYVNCCCFSS-QDQELYTG----GNDRQILVWCPSRHISDGVDAGP  437 (446)
Q Consensus       367 ~~~~~~~~~~~~~~~d~~~~~~~~--~l~gH~~~v~~~~fSp-d~~~lvtg----s~D~~v~vW~~~~~~~~~~~~~~  437 (446)
                      +..+++... .+.+||..+++...  .+..+......++++| +++..++.    ..++.|.+|+++......+..|.
T Consensus       236 ~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i~~G~  312 (328)
T 3dsm_A          236 RDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFYVGI  312 (328)
T ss_dssp             SCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEEEEEEE
T ss_pred             CCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEEEEecc
Confidence            888888765 88889988777532  1222346789999999 56666777    67899999999955555555444

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.56  E-value=1.3e-12  Score=122.86  Aligned_cols=270  Identities=10%  Similarity=0.071  Sum_probs=168.1

Q ss_pred             ccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEE
Q 013274           43 KGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG  122 (446)
Q Consensus        43 ~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~  122 (446)
                      ++.|++|.|++ ++..+++.+.++.++.|..+...                    ...++...+.++.+.+ ++.+++++
T Consensus         5 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~-~g~l~~~~   62 (333)
T 2dg1_A            5 QQDLPTLFYSG-KSNSAVPIISESELQTITAEPWL--------------------EISKKGLQLEGLNFDR-QGQLFLLD   62 (333)
T ss_dssp             -CCCCBCCSCG-GGGCSSCCCCGGGSCEEECEEEE--------------------EEESSCCCEEEEEECT-TSCEEEEE
T ss_pred             ccccceeeecC-CccceeEEeecccCcccccceeE--------------------EEeccCccccCcEECC-CCCEEEEE
Confidence            35678889986 45567777889999999322110                    0112333455667765 77788888


Q ss_pred             eCCCeEEEEECCCCeeeEEE-ecCCceEEeeeccCCCCceEEEEeeCC----CcEEEEeCCCCceeeeee--CCCCCeEE
Q 013274          123 SYDHYVKVWDTNCTRVVMNF-KMPGKVYRTAMSPLAASHMLIAAGTED----VQVRLCDIASGAISQTLS--GHRDGIMT  195 (446)
Q Consensus       123 s~D~~i~iWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~lasgs~d----~~v~vwd~~~~~~~~~l~--~h~~~v~s  195 (446)
                      ..++.|.+||.++++..... .....+..+++.+.   ..++++...+    +.|.+||.+++.....+.  .+...+..
T Consensus        63 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~d---g~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~  139 (333)
T 2dg1_A           63 VFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKD---GRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDD  139 (333)
T ss_dssp             TTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTT---SCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEE
T ss_pred             CCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCC---CcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccc
Confidence            89999999999887765433 23455777777764   3466665555    689999998886543333  34557899


Q ss_pred             EEEecCCCeEEEEeeC------CCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCcccc
Q 013274          196 VEWSTSSEWILVTGGC------DGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKR  269 (446)
Q Consensus       196 v~~s~~~~~~l~S~s~------Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (446)
                      +.++|+++ ++++...      .+.|..+|..++... .+                                        
T Consensus       140 i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~----------------------------------------  177 (333)
T 2dg1_A          140 MVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVT-PI----------------------------------------  177 (333)
T ss_dssp             EEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEE-EE----------------------------------------
T ss_pred             eEECCCCC-EEEEeccccccCCCceEEEEeCCCCEEE-Ee----------------------------------------
Confidence            99999987 4555443      133333333221110 00                                        


Q ss_pred             ccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEE-EEeecCCcEEEEecCc-Cceeeee
Q 013274          270 SANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL-LSAGSDSRIRLWDVES-GRNTLVN  347 (446)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l-~sgs~D~~i~lWd~~~-~~~~~~~  347 (446)
                                                          ..+...+..++|+|||++| ++.+.++.|.+||+.+ +.. ...
T Consensus       178 ------------------------------------~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~-~~~  220 (333)
T 2dg1_A          178 ------------------------------------IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVT-IQP  220 (333)
T ss_dssp             ------------------------------------EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSS-EEE
T ss_pred             ------------------------------------ecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcC-ccc
Confidence                                                0111236788999999855 5556788999999864 221 111


Q ss_pred             ee-EE--Eeec-CCCeEEEEcCCCcEEEEeC-CCceEEEEeecCceEEEeccccc------ceEEEEEcCCCCEEEEeeC
Q 013274          348 FE-TV--RLQT-SKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYE------YVNCCCFSSQDQELYTGGN  416 (446)
Q Consensus       348 ~~-~~--~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~l~gH~~------~v~~~~fSpd~~~lvtgs~  416 (446)
                      +. ..  .... ..+..+++.+++.+.+... ...+.+|+. +++.+..+..+..      .+.+++|+||++.|+.++.
T Consensus       221 ~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~  299 (333)
T 2dg1_A          221 FGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  299 (333)
T ss_dssp             EEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             ccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeC
Confidence            11 00  1111 1344577888887665543 467899987 6776666655443      6899999999877764444


Q ss_pred             C
Q 013274          417 D  417 (446)
Q Consensus       417 D  417 (446)
                      +
T Consensus       300 ~  300 (333)
T 2dg1_A          300 D  300 (333)
T ss_dssp             C
T ss_pred             c
Confidence            4

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.56  E-value=6.7e-13  Score=139.02  Aligned_cols=164  Identities=14%  Similarity=0.106  Sum_probs=107.7

Q ss_pred             eeEeCCCccc-----eeEEEeecCCCCEEEEeeCC---------CcEEEEEcccCcCCCCCCccccccceEEeccccccC
Q 013274           36 KEIVSPHKGS-----INSLQVDLTEERYLLSGASD---------SSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG  101 (446)
Q Consensus        36 ~~~~~~H~~~-----v~~l~~s~~~~~~l~s~s~D---------g~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  101 (446)
                      ..++.+|+..     .+.++||| |+++|+.++.+         +.+.+||++++...                  ...+
T Consensus        49 ~~~~~~~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~------------------~l~~  109 (740)
T 4a5s_A           49 SVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI------------------TEER  109 (740)
T ss_dssp             EEEECTTTTTTCCSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC------------------CSSC
T ss_pred             EEEEechhhhhhcccccceEECC-CCCEEEEEECCeeeEEEccceEEEEEECCCCcEE------------------Eccc
Confidence            4456666532     34578897 68899999887         55669999876421                  1234


Q ss_pred             ccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCc---e-----------------EEeeeccCCCCce
Q 013274          102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK---V-----------------YRTAMSPLAASHM  161 (446)
Q Consensus       102 h~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~---~-----------------~~~~~~~~~~~~~  161 (446)
                      |...+....|+| ||+.||.++ |+.|.+||+.++...+ +...+.   +                 ..+.++|++   .
T Consensus       110 ~~~~~~~~~~SP-dG~~la~~~-~~~i~~~~~~~~~~~~-lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg---~  183 (740)
T 4a5s_A          110 IPNNTQWVTWSP-VGHKLAYVW-NNDIYVKIEPNLPSYR-ITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG---T  183 (740)
T ss_dssp             CCTTEEEEEECS-STTCEEEEE-TTEEEEESSTTSCCEE-CCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS---S
T ss_pred             CCCcceeeEECC-CCCEEEEEE-CCeEEEEECCCCceEE-EcCCCCccceecCcccccccchhcCCCcceEECCCC---C
Confidence            556788888887 888888875 6899999998876433 222221   1                 125577654   3


Q ss_pred             EEEEeeCC------------------------------------CcEEEEeCCC---Cc--eeeeee------CCCCCeE
Q 013274          162 LIAAGTED------------------------------------VQVRLCDIAS---GA--ISQTLS------GHRDGIM  194 (446)
Q Consensus       162 ~lasgs~d------------------------------------~~v~vwd~~~---~~--~~~~l~------~h~~~v~  194 (446)
                      .||..+.|                                    ..|++||+++   +.  ....+.      +|...+.
T Consensus       184 ~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  263 (740)
T 4a5s_A          184 FLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLC  263 (740)
T ss_dssp             EEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEE
T ss_pred             EEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEE
Confidence            55554321                                    1588899998   73  223333      3788899


Q ss_pred             EEEEecCCCeEEEEee---CCCcEEEEEccCCc
Q 013274          195 TVEWSTSSEWILVTGG---CDGAIRFWDIRRAG  224 (446)
Q Consensus       195 sv~~s~~~~~~l~S~s---~Dg~I~iWd~~~~~  224 (446)
                      .++|+|+++.++....   .+..|++||+.++.
T Consensus       264 ~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          264 DVTWATQERISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             EEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             EEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence            9999999985333322   23479999987764

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.54  E-value=5.5e-12  Score=120.37  Aligned_cols=280  Identities=12%  Similarity=0.037  Sum_probs=171.3

Q ss_pred             CCCccceeEEEeecCCCCEEEEee----------CCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEE
Q 013274           40 SPHKGSINSLQVDLTEERYLLSGA----------SDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSA  109 (446)
Q Consensus        40 ~~H~~~v~~l~~s~~~~~~l~s~s----------~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~  109 (446)
                      ..+..+  .++|+| ++++|..++          .|++|.+||+.+.+...         .+..... .. .+......+
T Consensus        48 ~~g~~p--~i~~sp-dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~---------~i~~~~~-~~-~~g~~p~~i  113 (361)
T 2oiz_A           48 PTAFNG--HVQVSN-DGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEK---------EISLPPK-RV-QGLNYDGLF  113 (361)
T ss_dssp             ECCEEE--EEEECT-TSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEE---------EEEECTT-BC-CBCCCGGGE
T ss_pred             cCCCCC--ceEECC-CCCEEEEEEecccccccCCCCCEEEEEECcCCcEEE---------EEEcCcc-cc-ccCCCcceE
Confidence            344444  899997 577777775          36789999987643210         0100000 00 011123345


Q ss_pred             EEeecCCcEEEEEeC--CCeEEEEECCCCeeeEE-EecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCC-Cceee-
Q 013274          110 IWYPVDTGLFVTGSY--DHYVKVWDTNCTRVVMN-FKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS-GAISQ-  184 (446)
Q Consensus       110 ~~~~~~~~~l~s~s~--D~~i~iWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~-~~~~~-  184 (446)
                      .++| ++++|+++..  +++|.+||+++++.+.. +...+. ..+.+.+..  ...+++.+.|+.+.+|+++. ++... 
T Consensus       114 ~~sp-dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~--~~~~~~~~~dg~~~~v~~~~~g~~~~~  189 (361)
T 2oiz_A          114 RQTT-DGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNR--PRSFMTICGDGGLLTINLGEDGKVASQ  189 (361)
T ss_dssp             EECT-TSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEEEECTTS--SSEEEEEETTSSEEEEEECTTSSEEEE
T ss_pred             EECC-CCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc-ceeEEcCCC--CeeEEEECCCCcEEEEEECCCCcEeee
Confidence            5655 8888888764  68999999999988877 665443 223344543  24667788899999999875 55431 


Q ss_pred             -----eeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCC
Q 013274          185 -----TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNS  259 (446)
Q Consensus       185 -----~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (446)
                           .+..+..++ .+.+++++..+ +..+.++.|.++|+...... .+....                   .      
T Consensus       190 ~~~~~~~~~~~~~~-~~~~~~~g~~~-~~~~~~~~v~v~d~~~~~~~-~~~~~~-------------------~------  241 (361)
T 2oiz_A          190 SRSKQMFSVKDDPI-FIAPALDKDKA-HFVSYYGNVYSADFSGDEVK-VDGPWS-------------------L------  241 (361)
T ss_dssp             EECCCCSCTTTSCB-CSCCEECSSEE-EEEBTTSEEEEEECSSSSCE-EEEEEE-------------------S------
T ss_pred             ccccceEcCCCCce-EEEecccCCEE-EEEeCCCeEEEEEecCCCce-eccccc-------------------c------
Confidence                 222222222 33345666543 45567899999998643210 000000                   0      


Q ss_pred             CcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeec----------
Q 013274          260 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS----------  329 (446)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~----------  329 (446)
                                               .........           ..  ......++|+||++.+.....          
T Consensus       242 -------------------------~~~~~~~~~-----------~~--p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~  283 (361)
T 2oiz_A          242 -------------------------LNDEDKAKN-----------WV--PGGYNLVGLHRASGRMYVFMHPDGKEGTHKF  283 (361)
T ss_dssp             -------------------------CCHHHHHTT-----------CE--ECCSSCEEEETTTTEEEEEEESSCCTTCTTC
T ss_pred             -------------------------cCccccccc-----------cc--cCCeeEEEEecCCCeEEEEEccCCCcccccC
Confidence                                     000000000           00  000112579999887655432          


Q ss_pred             -CCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecC--ceEEEecccccceEEEEEcC
Q 013274          330 -DSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSG--KTCLTFRGHYEYVNCCCFSS  406 (446)
Q Consensus       330 -D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~l~gH~~~v~~~~fSp  406 (446)
                       +.+|.+||+.+++..    ..+... . +..++++|++..++++..+.+.+||..++  +.+.++..+-.....++|+|
T Consensus       284 ~~~~v~viD~~t~~~v----~~i~~~-~-p~~ia~spdg~~l~v~n~~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p  357 (361)
T 2oiz_A          284 PAAEIWVMDTKTKQRV----ARIPGR-D-ALSMTIDQQRNLMLTLDGGNVNVYDISQPEPKLLRTIEGAAEASLQVQFHP  357 (361)
T ss_dssp             CCSEEEEEETTTTEEE----EEEECT-T-CCEEEEETTTTEEEEECSSCEEEEECSSSSCEEEEEETTSCSSEEEEEECC
T ss_pred             CCceEEEEECCCCcEE----EEEecC-C-eeEEEECCCCCEEEEeCCCeEEEEECCCCcceeeEEeccCCCCcEEEEecC
Confidence             348999999987531    222222 2 77899999999998887788999999999  88888888888899999999


Q ss_pred             CCC
Q 013274          407 QDQ  409 (446)
Q Consensus       407 d~~  409 (446)
                      ||+
T Consensus       358 ~G~  360 (361)
T 2oiz_A          358 VGG  360 (361)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            986

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.53  E-value=8.7e-13  Score=136.26  Aligned_cols=113  Identities=13%  Similarity=0.170  Sum_probs=79.1

Q ss_pred             ccccEeEEEEeecCCcEEEEEeCC----------CeEEEEECCC------CeeeEEE-ecCCceEEeeeccCCCCceEEE
Q 013274          102 HKYAISSAIWYPVDTGLFVTGSYD----------HYVKVWDTNC------TRVVMNF-KMPGKVYRTAMSPLAASHMLIA  164 (446)
Q Consensus       102 h~~~V~~~~~~~~~~~~l~s~s~D----------~~i~iWd~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~la  164 (446)
                      |...+.++.|+| |++.|++++.|          .+|.+||+.+      +...... .....+....++|++   ..|+
T Consensus       128 ~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG---~~la  203 (662)
T 3azo_A          128 GGLRWADPVLLP-ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDG---RQAV  203 (662)
T ss_dssp             TCEEEEEEEEET-TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTS---SEEE
T ss_pred             CCccccCcEECC-CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCC---CEEE
Confidence            566777888887 88899988887          6899999987      5543322 223344556677653   4566


Q ss_pred             EeeCC--------CcEEEEeCC-CC---ceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEE
Q 013274          165 AGTED--------VQVRLCDIA-SG---AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD  219 (446)
Q Consensus       165 sgs~d--------~~v~vwd~~-~~---~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd  219 (446)
                      .++.+        ..|++||++ ++   .......+|...+.++.|+|+++ ++++++.|+..+||.
T Consensus       204 ~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~  269 (662)
T 3azo_A          204 WLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHR  269 (662)
T ss_dssp             EEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEE
T ss_pred             EEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEE
Confidence            55533        479999999 57   44444455678999999999998 678888888544443

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.53  E-value=5.1e-11  Score=119.90  Aligned_cols=298  Identities=14%  Similarity=0.112  Sum_probs=190.1

Q ss_pred             ceeEEEeecCCCCEEEEeeCCCcEEEEEcc--cCcCCCCCCccccccceEEeccccccCccccEeEEEEee---cCCcEE
Q 013274           45 SINSLQVDLTEERYLLSGASDSSVAVYDVQ--RATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYP---VDTGLF  119 (446)
Q Consensus        45 ~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~---~~~~~l  119 (446)
                      .+..+.|+| ++++|.+++.|+.|.+||+.  +.+..         ..+.       .|  .....+.+++   ++++++
T Consensus       198 ~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t~~~v---------~~i~-------~G--~~P~~ia~s~~~~pDGk~l  258 (567)
T 1qks_A          198 AVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTV---------AEIK-------IG--SEARSIETSKMEGWEDKYA  258 (567)
T ss_dssp             CEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEE---------EEEE-------CC--SEEEEEEECCSTTCTTTEE
T ss_pred             CccceEECC-CCCEEEEEcCCCeEEEEECCCCCCcEe---------EEEe-------cC--CCCceeEEccccCCCCCEE
Confidence            466899997 68889899999999999985  33210         0010       11  1234567774   478877


Q ss_pred             EEEeC-CCeEEEEECCCCeeeEEEecCC------------ceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCcee--e
Q 013274          120 VTGSY-DHYVKVWDTNCTRVVMNFKMPG------------KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAIS--Q  184 (446)
Q Consensus       120 ~s~s~-D~~i~iWd~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~--~  184 (446)
                      +++.+ +++|.++|..+.+++..+...+            .+..+..++..  ..+++.-..++.|.++|..+.+..  .
T Consensus       259 ~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~--~~~vv~~~~~g~v~~vd~~~~~~~~v~  336 (567)
T 1qks_A          259 IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR--PEFIVNVKETGKILLVDYTDLNNLKTT  336 (567)
T ss_dssp             EEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSS--SEEEEEETTTTEEEEEETTCSSEEEEE
T ss_pred             EEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCC--CEEEEEecCCCeEEEEecCCCccceee
Confidence            76654 5999999999998887766432            23344455432  345566677899999998775422  2


Q ss_pred             eeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCC
Q 013274          185 TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPR  264 (446)
Q Consensus       185 ~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (446)
                      .+ ........+.|+|++++++++...+++|.++|+.+++....+...    +                           
T Consensus       337 ~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vg----g---------------------------  384 (567)
T 1qks_A          337 EI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTG----G---------------------------  384 (567)
T ss_dssp             EE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS----S---------------------------
T ss_pred             ee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEecc----C---------------------------
Confidence            23 233456678999999998888778899999999887654433210    0                           


Q ss_pred             CccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCC-EEEEee-cCCcEEEEecCcCc
Q 013274          265 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM-YLLSAG-SDSRIRLWDVESGR  342 (446)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~sgs-~D~~i~lWd~~~~~  342 (446)
                                                              ...|.+.-..+ ++|++. ..+++. .+++|.++|..+.+
T Consensus       385 ----------------------------------------~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~  423 (567)
T 1qks_A          385 ----------------------------------------QTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEG  423 (567)
T ss_dssp             ----------------------------------------SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTT
T ss_pred             ----------------------------------------cCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCC
Confidence                                                    01222211122 578744 445543 56899999988732


Q ss_pred             ee---eeeeeEEEeecCCCeEEEEcCCCcEEEEeC--------CCceEEEEeecC-----ce-EEEec-c-------ccc
Q 013274          343 NT---LVNFETVRLQTSKPIQLATTQDPAVVFVPC--------MTAVKAFDIWSG-----KT-CLTFR-G-------HYE  397 (446)
Q Consensus       343 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~d~~~~-----~~-~~~l~-g-------H~~  397 (446)
                      ..   ......+.........+.++|++..+++..        ...+.++|+.+.     .. ...+. +       -..
T Consensus       424 ~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  503 (567)
T 1qks_A          424 HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQP  503 (567)
T ss_dssp             CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCC
T ss_pred             CccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCc
Confidence            11   111223322233445677899999888865        237899999876     21 23332 1       135


Q ss_pred             ceEEEEEcCCCCEEEEee-----CCCcEEEeCCCCCCCCCcCCC
Q 013274          398 YVNCCCFSSQDQELYTGG-----NDRQILVWCPSRHISDGVDAG  436 (446)
Q Consensus       398 ~v~~~~fSpd~~~lvtgs-----~D~~v~vW~~~~~~~~~~~~~  436 (446)
                      .+..+.|+|||+.|...-     .++.|.|.|..+.++..++.+
T Consensus       504 ~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~  547 (567)
T 1qks_A          504 RVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD  547 (567)
T ss_dssp             EEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred             ceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence            789999999998876442     378999999887765555443

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.50  E-value=7.9e-11  Score=118.53  Aligned_cols=276  Identities=13%  Similarity=0.051  Sum_probs=183.3

Q ss_pred             CCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECC
Q 013274           55 EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTN  134 (446)
Q Consensus        55 ~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~  134 (446)
                      ++.++++...+++|.++|..+++...          .+.      .|  ..+..+.++| +++++++++.|+.|.+||+.
T Consensus       166 ~~~~~V~~~~~~~V~viD~~t~~v~~----------~i~------~g--~~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~  226 (567)
T 1qks_A          166 ENLFSVTLRDAGQIALIDGSTYEIKT----------VLD------TG--YAVHISRLSA-SGRYLFVIGRDGKVNMIDLW  226 (567)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEE----------EEE------CS--SCEEEEEECT-TSCEEEEEETTSEEEEEETT
T ss_pred             CceEEEEeCCCCeEEEEECCCCeEEE----------EEe------CC--CCccceEECC-CCCEEEEEcCCCeEEEEECC
Confidence            45678888899999999998764210          000      11  1233556665 88999999999999999996


Q ss_pred             --CCeeeEEEecCCceEEeeecc----CCCCceEEEEeeCCCcEEEEeCCCCceeeeeeC----------CCC-CeEEEE
Q 013274          135 --CTRVVMNFKMPGKVYRTAMSP----LAASHMLIAAGTEDVQVRLCDIASGAISQTLSG----------HRD-GIMTVE  197 (446)
Q Consensus       135 --~~~~~~~~~~~~~~~~~~~~~----~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~----------h~~-~v~sv~  197 (446)
                        +++.+..+........+++++    ++  ..++++...++.|.++|..+.+.+..+..          |.. .+.++.
T Consensus       227 ~~t~~~v~~i~~G~~P~~ia~s~~~~pDG--k~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~  304 (567)
T 1qks_A          227 MKEPTTVAEIKIGSEARSIETSKMEGWED--KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAIL  304 (567)
T ss_dssp             SSSCCEEEEEECCSEEEEEEECCSTTCTT--TEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEE
T ss_pred             CCCCcEeEEEecCCCCceeEEccccCCCC--CEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEE
Confidence              778887777655567788883    32  34555556679999999999988877652          222 577888


Q ss_pred             EecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCcee
Q 013274          198 WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVR  277 (446)
Q Consensus       198 ~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (446)
                      +++++..++++...+|.|.++|......+....                                               
T Consensus       305 ~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~-----------------------------------------------  337 (567)
T 1qks_A          305 ASHYRPEFIVNVKETGKILLVDYTDLNNLKTTE-----------------------------------------------  337 (567)
T ss_dssp             ECSSSSEEEEEETTTTEEEEEETTCSSEEEEEE-----------------------------------------------
T ss_pred             EcCCCCEEEEEecCCCeEEEEecCCCccceeee-----------------------------------------------
Confidence            898877667777778999999976532211100                                               


Q ss_pred             ecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEe-ecCCcEEEEecCcCceeeeeeeE-E-Eee
Q 013274          278 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSA-GSDSRIRLWDVESGRNTLVNFET-V-RLQ  354 (446)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sg-s~D~~i~lWd~~~~~~~~~~~~~-~-~~~  354 (446)
                                                  .........+.|+|+|++++++ ..+++|.++|+.+++.. ..+.. . ..+
T Consensus       338 ----------------------------i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~-~~i~vgg~~Ph  388 (567)
T 1qks_A          338 ----------------------------ISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV-AIEDTGGQTPH  388 (567)
T ss_dssp             ----------------------------EECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEE-EEEECSSSSBC
T ss_pred             ----------------------------eeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEE-EEEeccCcCCC
Confidence                                        0001124567899999987655 46789999999987532 11111 0 011


Q ss_pred             cCCCeEEEEcCCCcEEE-EeC--CCceEEEEeec-------CceEEEecccccceEEEEEcCCCCEEEEeeC-------C
Q 013274          355 TSKPIQLATTQDPAVVF-VPC--MTAVKAFDIWS-------GKTCLTFRGHYEYVNCCCFSSQDQELYTGGN-------D  417 (446)
Q Consensus       355 ~~~~~~~~~~~~~~~~~-~~~--~~~~~~~d~~~-------~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~-------D  417 (446)
                      .+.... .+.|+...++ ++.  ...+.++|..+       .+.+.++.+....-.-+.++||+++|.....       .
T Consensus       389 pg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~  467 (567)
T 1qks_A          389 PGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEIS  467 (567)
T ss_dssp             CTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHH
T ss_pred             Ccccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccC
Confidence            111222 2566644444 342  35789999887       6677787766444455789999999886553       3


Q ss_pred             CcEEEeCCCCC
Q 013274          418 RQILVWCPSRH  428 (446)
Q Consensus       418 ~~v~vW~~~~~  428 (446)
                      ++|.|++..+.
T Consensus       468 ~~v~v~d~~~~  478 (567)
T 1qks_A          468 GSVAVFDIKAM  478 (567)
T ss_dssp             TCEEEEEGGGC
T ss_pred             ceEEEEECCcc
Confidence            69999988765

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.49  E-value=1.8e-11  Score=113.18  Aligned_cols=229  Identities=10%  Similarity=0.093  Sum_probs=148.8

Q ss_pred             EeEEEEeecCCc-EEEEEeCCCeEEEEECCCCeeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCcee
Q 013274          106 ISSAIWYPVDTG-LFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAIS  183 (446)
Q Consensus       106 V~~~~~~~~~~~-~l~s~s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~  183 (446)
                      ..+++|.| +++ +++++..++.|..||..++  ...+.. .+.+..+++.+.   ..++++...++.|.+||.++++..
T Consensus        30 ~eg~~~d~-~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~d---g~l~v~~~~~~~i~~~d~~~g~~~  103 (296)
T 3e5z_A           30 TEGPVYVP-ARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQ---GHLIACSHGLRRLERQREPGGEWE  103 (296)
T ss_dssp             EEEEEEEG-GGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTT---CCEEEEETTTTEEEEECSTTCCEE
T ss_pred             ccCCeEeC-CCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCC---CcEEEEecCCCeEEEEcCCCCcEE
Confidence            44567776 565 7888889999999999877  444443 344666777664   346666666789999999888754


Q ss_pred             eeeeCC----CCCeEEEEEecCCCeEEEEeeCCCc---------------EEEEEccCCceeEEeecccccccCCCcccc
Q 013274          184 QTLSGH----RDGIMTVEWSTSSEWILVTGGCDGA---------------IRFWDIRRAGCFRVLDQSQSQLGRRPPLLK  244 (446)
Q Consensus       184 ~~l~~h----~~~v~sv~~s~~~~~~l~S~s~Dg~---------------I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~  244 (446)
                      ......    ...+..++++|+++ +++|.+..|+               -.||.+...+.+..                
T Consensus       104 ~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~----------------  166 (296)
T 3e5z_A          104 SIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSA----------------  166 (296)
T ss_dssp             EEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEE----------------
T ss_pred             EEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCCCCEEE----------------
Confidence            333221    23456789999887 4566321111               12332221110000                


Q ss_pred             cceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEE
Q 013274          245 RKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL  324 (446)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l  324 (446)
                                                                                  ...+......++|+|||+.|
T Consensus       167 ------------------------------------------------------------~~~~~~~~~gi~~s~dg~~l  186 (296)
T 3e5z_A          167 ------------------------------------------------------------PIRDRVKPNGLAFLPSGNLL  186 (296)
T ss_dssp             ------------------------------------------------------------EECCCSSEEEEEECTTSCEE
T ss_pred             ------------------------------------------------------------eecCCCCCccEEECCCCCEE
Confidence                                                                        01122346789999999988


Q ss_pred             EEeecCCcEEEEecC-cCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEE
Q 013274          325 LSAGSDSRIRLWDVE-SGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCC  403 (446)
Q Consensus       325 ~sgs~D~~i~lWd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~  403 (446)
                      ++.+.++.|.+||+. .++.. ............+..+++.+++.+.+.. ...+.+|+.. ++.+..+..+.. +++++
T Consensus       187 v~~~~~~~i~~~~~~~~g~~~-~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g~~~~~~~~~~~-~~~~~  262 (296)
T 3e5z_A          187 VSDTGDNATHRYCLNARGETE-YQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-GDELGRVLTPQT-TSNLC  262 (296)
T ss_dssp             EEETTTTEEEEEEECSSSCEE-EEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-SCEEEEEECSSC-CCEEE
T ss_pred             EEeCCCCeEEEEEECCCCcCc-CCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-CCEEEEEECCCC-ceeEE
Confidence            888889999999987 33320 0011111123345567888888866655 7788999874 888888888888 99999


Q ss_pred             E-cCCCCEEEEeeCCCcEE
Q 013274          404 F-SSQDQELYTGGNDRQIL  421 (446)
Q Consensus       404 f-Spd~~~lvtgs~D~~v~  421 (446)
                      | +||++.|+.++.++..+
T Consensus       263 f~~~d~~~L~v~t~~~l~~  281 (296)
T 3e5z_A          263 FGGPEGRTLYMTVSTEFWS  281 (296)
T ss_dssp             EESTTSCEEEEEETTEEEE
T ss_pred             EECCCCCEEEEEcCCeEEE
Confidence            9 58999998888875433

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.49  E-value=1.1e-12  Score=126.11  Aligned_cols=235  Identities=9%  Similarity=-0.033  Sum_probs=143.9

Q ss_pred             EEEeecCCcEEEEEeC-CCe--EEEEECCCCeeeEEEecCCc-eEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceee
Q 013274          109 AIWYPVDTGLFVTGSY-DHY--VKVWDTNCTRVVMNFKMPGK-VYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ  184 (446)
Q Consensus       109 ~~~~~~~~~~l~s~s~-D~~--i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~  184 (446)
                      ..|+| |+++|+.++. |+.  |.+||+.+++........+. .....++|+   ...|+.++.+..|++||+.+++...
T Consensus        41 ~~~Sp-Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spd---g~~l~~~~~~~~l~~~d~~~g~~~~  116 (388)
T 3pe7_A           41 KCFTR-DGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPD---DDALFYVKDGRNLMRVDLATLEENV  116 (388)
T ss_dssp             CCBCT-TSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTT---SSEEEEEETTTEEEEEETTTCCEEE
T ss_pred             ccCCC-CCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCC---CCEEEEEeCCCeEEEEECCCCccee
Confidence            34555 8888888887 664  88889988876554333222 223456664   4578888888899999999998766


Q ss_pred             eeeCCCCCeEEEE--EecCCCeEEEEe----------------------eCCCcEEEEEccCCceeEEeecccccccCCC
Q 013274          185 TLSGHRDGIMTVE--WSTSSEWILVTG----------------------GCDGAIRFWDIRRAGCFRVLDQSQSQLGRRP  240 (446)
Q Consensus       185 ~l~~h~~~v~sv~--~s~~~~~~l~S~----------------------s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~  240 (446)
                      .+..+...+....  ++|+++. ++..                      ..+..|.+||+.++....             
T Consensus       117 ~~~~~~~~~~~~~~~~~~dg~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-------------  182 (388)
T 3pe7_A          117 VYQVPAEWVGYGTWVANSDCTK-LVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV-------------  182 (388)
T ss_dssp             EEECCTTEEEEEEEEECTTSSE-EEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE-------------
T ss_pred             eeechhhcccccceeECCCCCe-eccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEE-------------
Confidence            6666666554443  4788775 3321                      123445555554432110             


Q ss_pred             cccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEcc-
Q 013274          241 PLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE-  319 (446)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~-  319 (446)
                                                                                      ...+...+..+.|+| 
T Consensus       183 ----------------------------------------------------------------l~~~~~~~~~~~~sp~  198 (388)
T 3pe7_A          183 ----------------------------------------------------------------ILQENQWLGHPIYRPY  198 (388)
T ss_dssp             ----------------------------------------------------------------EEEESSCEEEEEEETT
T ss_pred             ----------------------------------------------------------------eecCCccccccEECCC
Confidence                                                                            112334578899999 


Q ss_pred             CCCEEEEeecC------CcEEEEecCcCceeeeeeeEEEeec--CCCeEEEEcCCCcEEEE-eC--CC---ceEEEEeec
Q 013274          320 DGMYLLSAGSD------SRIRLWDVESGRNTLVNFETVRLQT--SKPIQLATTQDPAVVFV-PC--MT---AVKAFDIWS  385 (446)
Q Consensus       320 dg~~l~sgs~D------~~i~lWd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~--~~---~~~~~d~~~  385 (446)
                      ||+.|+..+.+      ..|.++|+.++.....  .   ...  .....++++|++..++. ..  ..   .+.+||+.+
T Consensus       199 dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l--~---~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~  273 (388)
T 3pe7_A          199 DDSTVAFCHEGPHDLVDARMWLINEDGTNMRKV--K---THAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPET  273 (388)
T ss_dssp             EEEEEEEEECSCTTTSSCSEEEEETTSCCCEES--C---CCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTT
T ss_pred             CCCEEEEEEecCCCCCcceEEEEeCCCCceEEe--e---eCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCC
Confidence            99988877653      3788888766532111  1   011  11234678999885543 32  11   388999988


Q ss_pred             Cce--EEEecccccc---eEEEEEcCCCCEEEEe---------eCCCcEEEeCCCCCCC
Q 013274          386 GKT--CLTFRGHYEY---VNCCCFSSQDQELYTG---------GNDRQILVWCPSRHIS  430 (446)
Q Consensus       386 ~~~--~~~l~gH~~~---v~~~~fSpd~~~lvtg---------s~D~~v~vW~~~~~~~  430 (446)
                      ++.  +..+.++...   ...++|||||++|+..         ..+..|.+|++++...
T Consensus       274 g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~  332 (388)
T 3pe7_A          274 LENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ  332 (388)
T ss_dssp             CCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE
T ss_pred             CceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce
Confidence            874  3345442211   1224799999998843         5567899999987643

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.49  E-value=2.8e-11  Score=114.32  Aligned_cols=257  Identities=9%  Similarity=0.080  Sum_probs=156.9

Q ss_pred             cceeEEEeecCCCCEEEEee---------CCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeec
Q 013274           44 GSINSLQVDLTEERYLLSGA---------SDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV  114 (446)
Q Consensus        44 ~~v~~l~~s~~~~~~l~s~s---------~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~  114 (446)
                      ..+..+++   +|+.|+...         .++.|.+||++++...            .+          ..+....|+| 
T Consensus        15 ~~~~~~~~---dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~------------~l----------~~~~~~~~Sp-   68 (347)
T 2gop_A           15 AYLSDPRT---KGELVAYVLTKANLKDNKYENTIVIENLKNNARR------------FI----------ENATMPRISP-   68 (347)
T ss_dssp             CEEEEEEE---ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE------------EE----------ESCEEEEECT-
T ss_pred             EEcccceE---CCcEEEEEEeecCcccCCccceEEEEeCCCCceE------------Ec----------ccCCCeEECC-
Confidence            34566666   456665532         2667999998764310            00          2355667776 


Q ss_pred             CCcEEEEEeCC---C--eEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeC---------------------
Q 013274          115 DTGLFVTGSYD---H--YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTE---------------------  168 (446)
Q Consensus       115 ~~~~l~s~s~D---~--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~---------------------  168 (446)
                      ++++|+.++.+   +  .|.+||+.+++......... +..+.++|++   ..|+.++.                     
T Consensus        69 Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg---~~l~~~~~~~~~~~~~~~~~~~~~~~~g~  144 (347)
T 2gop_A           69 DGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDS---RKLLIVGFKRREDEDFIFEDDVPAWFDDL  144 (347)
T ss_dssp             TSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTS---SEEEEEEECCCC---------CCCC----
T ss_pred             CCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCC---CEEEEEEccCCCcCCcEEEcccceeecCc
Confidence            88888877654   3  37888898887665554444 6777888754   34444432                     


Q ss_pred             ------CCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCC-------cEEEEEccCCceeEEeeccccc
Q 013274          169 ------DVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDG-------AIRFWDIRRAGCFRVLDQSQSQ  235 (446)
Q Consensus       169 ------d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg-------~I~iWd~~~~~~~~~~~~~~~~  235 (446)
                            ...|++||+.+++.+..+.. . .+..+.|+|++  ++++++.++       ...||.+.++. ...+      
T Consensus       145 ~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l------  213 (347)
T 2gop_A          145 GFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKM------  213 (347)
T ss_dssp             -----CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTE-EEEE------
T ss_pred             ccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCCc-eEEe------
Confidence                  25799999999877455555 3 78899999998  456665542       44555443221 1110      


Q ss_pred             ccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEE
Q 013274          236 LGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGL  315 (446)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l  315 (446)
                                                                                            ..+ ..+..+
T Consensus       214 ----------------------------------------------------------------------~~~-~~~~~~  222 (347)
T 2gop_A          214 ----------------------------------------------------------------------FEK-VSFYAV  222 (347)
T ss_dssp             ----------------------------------------------------------------------EEE-ESEEEE
T ss_pred             ----------------------------------------------------------------------ccC-cceeeE
Confidence                                                                                  011 234433


Q ss_pred             EEccCCCEEEEeecCC--------cEEEEecCcCceeeeeeeEEEeecCCCeE-EEEcCCCcEEEEeC-CCceEEEEeec
Q 013274          316 KVTEDGMYLLSAGSDS--------RIRLWDVESGRNTLVNFETVRLQTSKPIQ-LATTQDPAVVFVPC-MTAVKAFDIWS  385 (446)
Q Consensus       316 ~fs~dg~~l~sgs~D~--------~i~lWd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~d~~~  385 (446)
                        +|||++|+.++.+.        .|.+||  +++.... ...   ....... +.++ ++ +++.+. ....++| +.+
T Consensus       223 --spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l-~~~---~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~  291 (347)
T 2gop_A          223 --DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGI-LDE---VDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWD  291 (347)
T ss_dssp             --EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEES-STT---CCSEEEEEEEET-TE-EEEEEEETTEEEEE-EES
T ss_pred             --CCCCCEEEEEEccccCCccccceEEEEC--CCceEec-ccc---CCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcC
Confidence              89999888777553        677787  4332111 000   0011122 5566 66 655543 3578899 876


Q ss_pred             CceEEEecccccceEEEEEcCCCCEEEEeeCCCcE-EEeCCC
Q 013274          386 GKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQI-LVWCPS  426 (446)
Q Consensus       386 ~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v-~vW~~~  426 (446)
                      ++. ..+..+...|.+++|+|  +++++++.++.. +||..+
T Consensus       292 g~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          292 GEI-KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             SSE-EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred             Cce-EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence            665 44445688899999999  788888777765 888665

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.48  E-value=3.2e-11  Score=125.67  Aligned_cols=247  Identities=11%  Similarity=0.049  Sum_probs=154.1

Q ss_pred             cCccccEeEEEEeecCCcEEEEEeCCC-----eEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCc---
Q 013274          100 HGHKYAISSAIWYPVDTGLFVTGSYDH-----YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQ---  171 (446)
Q Consensus       100 ~gh~~~V~~~~~~~~~~~~l~s~s~D~-----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~---  171 (446)
                      .+|...+....|+| |+++||.++.++     +|++||+.+++.+........+..+++++++   ..|+.++.+..   
T Consensus       121 ~~~~~~~~~~~~SP-Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg---~~l~~~~~~~~~~~  196 (710)
T 2xdw_A          121 DDGTVALRGYAFSE-DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDG---KGMFYNAYPQQDGK  196 (710)
T ss_dssp             TTSCEEEEEEEECT-TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTS---SEEEEEECCCCSSC
T ss_pred             cCCCEEEEEEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCC---CEEEEEEECCcccc
Confidence            35666777888886 888888665543     8999999998876532211123456777753   45666666654   


Q ss_pred             -------------EEEEeCCCCce----eeeeeCCCCCeEEEEEecCCCeEEEEeeC----CCcEEEEEccC------Cc
Q 013274          172 -------------VRLCDIASGAI----SQTLSGHRDGIMTVEWSTSSEWILVTGGC----DGAIRFWDIRR------AG  224 (446)
Q Consensus       172 -------------v~vwd~~~~~~----~~~l~~h~~~v~sv~~s~~~~~~l~S~s~----Dg~I~iWd~~~------~~  224 (446)
                                   |++|++.++..    +.....|...+.++.|+|++++++++...    +..|.+||+.+      +.
T Consensus       197 ~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~  276 (710)
T 2xdw_A          197 SDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGI  276 (710)
T ss_dssp             CSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSS
T ss_pred             ccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCc
Confidence                         99999988752    22223356668899999999986555431    56899999864      11


Q ss_pred             -eeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccc
Q 013274          225 -CFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQD  303 (446)
Q Consensus       225 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (446)
                       .+..+                                                                          
T Consensus       277 ~~~~~l--------------------------------------------------------------------------  282 (710)
T 2xdw_A          277 LKWVKL--------------------------------------------------------------------------  282 (710)
T ss_dssp             CCCEEE--------------------------------------------------------------------------
T ss_pred             cceEEe--------------------------------------------------------------------------
Confidence             01000                                                                          


Q ss_pred             cccccccCeEEEEEccCCCEEEEeecC----CcEEEEecCcCceeeeeeeEEEeecC--CCeEEEEcCCCcEEEEeCCC-
Q 013274          304 RATAHYGAVTGLKVTEDGMYLLSAGSD----SRIRLWDVESGRNTLVNFETVRLQTS--KPIQLATTQDPAVVFVPCMT-  376 (446)
Q Consensus       304 ~~~~h~~~v~~l~fs~dg~~l~sgs~D----~~i~lWd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-  376 (446)
                        ..+...+.. .|+|+|..|+..+.+    ..|.+||+.++....  ...+.....  ....+.++++..++++...+ 
T Consensus       283 --~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g  357 (710)
T 2xdw_A          283 --IDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESK--WKVLVPEHEKDVLEWVACVRSNFLVLCYLHDV  357 (710)
T ss_dssp             --ECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGG--CEEEECCCSSCEEEEEEEETTTEEEEEEEETT
T ss_pred             --eCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccc--ceeccCCCCCCeEEEEEEEcCCEEEEEEEECC
Confidence              011122222 478888876655543    369999998753100  011111111  12234555566666655332 


Q ss_pred             --ceEEEEeecCceEEEecccccceEEEEEcCCCCEEE-Eee---CCCcEEEeCCCCCC
Q 013274          377 --AVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELY-TGG---NDRQILVWCPSRHI  429 (446)
Q Consensus       377 --~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lv-tgs---~D~~v~vW~~~~~~  429 (446)
                        .+.+|++.+++....+..|.+.|..++++||++.|+ +.+   ..++|.+|++.+..
T Consensus       358 ~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          358 KNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence              456677767887888888888999999999997665 333   34779999987654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.46  E-value=8.2e-10  Score=101.53  Aligned_cols=279  Identities=9%  Similarity=0.063  Sum_probs=176.8

Q ss_pred             CCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEE
Q 013274           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV  120 (446)
Q Consensus        41 ~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~  120 (446)
                      .+...+.+|++++ ++++.++...++.|.+||.. +...             ...   ...+...+.++.+.+ ++.+++
T Consensus        12 ~~~~~~~~i~~d~-~g~l~v~~~~~~~v~~~d~~-~~~~-------------~~~---~~~~~~~~~~i~~~~-~g~l~v   72 (299)
T 2z2n_A           12 NQDTGPYGITVSD-KGKVWITQHKANMISCINLD-GKIT-------------EYP---LPTPDAKVMCLTISS-DGEVWF   72 (299)
T ss_dssp             SSSCCEEEEEECT-TSCEEEEETTTTEEEEECTT-CCEE-------------EEE---CSSTTCCEEEEEECT-TSCEEE
T ss_pred             CcCCCccceEECC-CCCEEEEecCCCcEEEEcCC-CCeE-------------Eec---CCcccCceeeEEECC-CCCEEE
Confidence            4556799999986 57777777778999999976 3210             000   011224566666654 677777


Q ss_pred             EEeCCCeEEEEECCCCeeeEEEecC---CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceee-eeeCCCCCeEEE
Q 013274          121 TGSYDHYVKVWDTNCTRVVMNFKMP---GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ-TLSGHRDGIMTV  196 (446)
Q Consensus       121 s~s~D~~i~iWd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~-~l~~h~~~v~sv  196 (446)
                      +...++.|..||.. ++. ..+..+   .....+++.+.   ..++++...++.|.+||. ++.... .+..+...+..+
T Consensus        73 ~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~---g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i  146 (299)
T 2z2n_A           73 TENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPN---GDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFI  146 (299)
T ss_dssp             EETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTT---SCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred             eCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCC---CCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceE
Confidence            77778899999986 332 333322   23556666543   346666666789999998 554432 233455678999


Q ss_pred             EEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCce
Q 013274          197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGV  276 (446)
Q Consensus       197 ~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (446)
                      ++++++. ++++...++.|..||. ++.... +.                                              
T Consensus       147 ~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~~-~~----------------------------------------------  177 (299)
T 2z2n_A          147 TLGSDNA-LWFTENQNNAIGRITE-SGDITE-FK----------------------------------------------  177 (299)
T ss_dssp             EECTTSC-EEEEETTTTEEEEECT-TCCEEE-EE----------------------------------------------
T ss_pred             EEcCCCC-EEEEeCCCCEEEEEcC-CCcEEE-ee----------------------------------------------
Confidence            9999886 5666666788999987 432111 00                                              


Q ss_pred             eecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecC
Q 013274          277 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTS  356 (446)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~  356 (446)
                                                  ...+...+.+++++++|.++++...++.|..||. +++...  + .......
T Consensus       178 ----------------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~--~-~~~~~~~  225 (299)
T 2z2n_A          178 ----------------------------IPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE--F-KIPTPNA  225 (299)
T ss_dssp             ----------------------------CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE--E-ECSSTTC
T ss_pred             ----------------------------CCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE--E-ECCCCCC
Confidence                                        0001123678999999998887777889999998 554211  1 1111123


Q ss_pred             CCeEEEEcCCCcEEEEe-CCCceEEEEeecCceEE-EecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC
Q 013274          357 KPIQLATTQDPAVVFVP-CMTAVKAFDIWSGKTCL-TFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH  428 (446)
Q Consensus       357 ~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~-~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~  428 (446)
                      .+..+++.+++.+.+.. ....+..|+. +++... .+.++...+.++++ +++++.++.+ .+.|..+++.+.
T Consensus       226 ~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~  296 (299)
T 2z2n_A          226 RPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD  296 (299)
T ss_dssp             CEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred             CceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence            45567788887765554 3467888887 454322 24566678999999 9999888776 455666666543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.46  E-value=9.3e-12  Score=129.41  Aligned_cols=245  Identities=10%  Similarity=0.012  Sum_probs=147.0

Q ss_pred             cCccccEeEEEEeecCCcEEE-----EEeCCCeEEEEECCCCeeeEEEecCCc-eEEeeeccCCCCceEEEEeeCCCc--
Q 013274          100 HGHKYAISSAIWYPVDTGLFV-----TGSYDHYVKVWDTNCTRVVMNFKMPGK-VYRTAMSPLAASHMLIAAGTEDVQ--  171 (446)
Q Consensus       100 ~gh~~~V~~~~~~~~~~~~l~-----s~s~D~~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lasgs~d~~--  171 (446)
                      .+|...+.+..++| |+++||     +|+++.+|++||+++++.+......+. ...+++++++   ..|+.++.|..  
T Consensus       117 ~~~~~~~~~~~~SP-DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg---~~l~~~~~d~~~~  192 (695)
T 2bkl_A          117 KDGTVSLGTWAVSW-DGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDS---KGFYYEWLPTDPS  192 (695)
T ss_dssp             SSSCEEEEEEEECT-TSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTS---SEEEEEECCCCTT
T ss_pred             cCCCEEEEEEEECC-CCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCC---CEEEEEEecCCCC
Confidence            46777788888886 888888     566678999999999886511112111 1456677753   46777777665  


Q ss_pred             -----------EEEEeCCCCc----eeeeeeCCCCCeEEEEEecCCCeEEEEeeCC-C--cEEEEEccCCceeEEeeccc
Q 013274          172 -----------VRLCDIASGA----ISQTLSGHRDGIMTVEWSTSSEWILVTGGCD-G--AIRFWDIRRAGCFRVLDQSQ  233 (446)
Q Consensus       172 -----------v~vwd~~~~~----~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~D-g--~I~iWd~~~~~~~~~~~~~~  233 (446)
                                 |++|++.++.    ++....+|...+.++.|+|++++++++...+ +  .|.+||..++.. +.+    
T Consensus       193 ~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l----  267 (695)
T 2bkl_A          193 IKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLL----  267 (695)
T ss_dssp             SCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEE----
T ss_pred             CccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEe----
Confidence                       9999999875    3334445667889999999999865544433 3  444444322110 000    


Q ss_pred             ccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeE
Q 013274          234 SQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVT  313 (446)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  313 (446)
                                                                                              ..+...+.
T Consensus       268 ------------------------------------------------------------------------~~~~~~~~  275 (695)
T 2bkl_A          268 ------------------------------------------------------------------------VKGVGAKY  275 (695)
T ss_dssp             ------------------------------------------------------------------------EECSSCCE
T ss_pred             ------------------------------------------------------------------------ecCCCceE
Confidence                                                                                    01112233


Q ss_pred             EEEEccCCCEEEEee---cCCcEEEEecCcCceeeeeeeEEEeec-CC-CeEEEEcCCCcEEEEeC-CCceEEEEee-cC
Q 013274          314 GLKVTEDGMYLLSAG---SDSRIRLWDVESGRNTLVNFETVRLQT-SK-PIQLATTQDPAVVFVPC-MTAVKAFDIW-SG  386 (446)
Q Consensus       314 ~l~fs~dg~~l~sgs---~D~~i~lWd~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~-~~~~~~~d~~-~~  386 (446)
                      ...+ ++|.++++..   .+++|.+||+.++....  ...+.... .. ...+.++ ++.++++.. ....++|.+. ++
T Consensus       276 ~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~--~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g  351 (695)
T 2bkl_A          276 EVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARAS--WKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKG  351 (695)
T ss_dssp             EEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGG--CEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred             EEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccC--CeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC
Confidence            3344 5565444443   35889999998753200  00111111 11 1223444 444555443 3345666554 46


Q ss_pred             ceEEEeccc-ccceEEEEEcCCCCEEE----EeeCCCcEEEeCCCCCC
Q 013274          387 KTCLTFRGH-YEYVNCCCFSSQDQELY----TGGNDRQILVWCPSRHI  429 (446)
Q Consensus       387 ~~~~~l~gH-~~~v~~~~fSpd~~~lv----tgs~D~~v~vW~~~~~~  429 (446)
                      +....+..+ .+.|..++++||++.|+    +....++|.+|++.++.
T Consensus       352 ~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          352 KPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             CEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             CeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            666777766 77888999999998777    34445789999987654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.45  E-value=1.3e-10  Score=106.42  Aligned_cols=216  Identities=10%  Similarity=0.065  Sum_probs=152.4

Q ss_pred             CcEEEEEeCCCeEEEEECCCCeeeEEEecCC--ceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCC-CCC
Q 013274          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPG--KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGH-RDG  192 (446)
Q Consensus       116 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h-~~~  192 (446)
                      +++|++++.|+.|.+||.++++.+.++....  ..+.+.+.+.   ..+++  +.++.|+.||. +++.++.+..+ ...
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pd---G~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~   78 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKA---GEILF--SYSKGAKMITR-DGRELWNIAAPAGCE   78 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTT---SCEEE--ECBSEEEEECT-TSCEEEEEECCTTCE
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCC---CCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcc
Confidence            5789999999999999999999998888654  4667777764   34666  34778999999 89999988865 357


Q ss_pred             eEEEEEecCCCeEEEEeeC-CCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCcccccc
Q 013274          193 IMTVEWSTSSEWILVTGGC-DGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSA  271 (446)
Q Consensus       193 v~sv~~s~~~~~~l~S~s~-Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (446)
                      +.++.+.++++. +++.+. ++.|..+|. +++.+..+....                                      
T Consensus        79 ~~~~~~~~dG~~-lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~--------------------------------------  118 (276)
T 3no2_A           79 MQTARILPDGNA-LVAWCGHPSTILEVNM-KGEVLSKTEFET--------------------------------------  118 (276)
T ss_dssp             EEEEEECTTSCE-EEEEESTTEEEEEECT-TSCEEEEEEECC--------------------------------------
T ss_pred             ccccEECCCCCE-EEEecCCCCEEEEEeC-CCCEEEEEeccC--------------------------------------
Confidence            889999999985 566665 667777774 444332221000                                      


Q ss_pred             CCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEE
Q 013274          272 NGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV  351 (446)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~  351 (446)
                                       .               ...+......+++.++|.+|++...+++|..||.. ++... .+   
T Consensus       119 -----------------~---------------~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w-~~---  161 (276)
T 3no2_A          119 -----------------G---------------IERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLN-SV---  161 (276)
T ss_dssp             -----------------S---------------CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEE-EE---
T ss_pred             -----------------C---------------CCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEE-EE---
Confidence                             0               00011123344678999999999999999999987 65321 11   


Q ss_pred             EeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccc------cceEEEEEcCCCCEEEEee
Q 013274          352 RLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHY------EYVNCCCFSSQDQELYTGG  415 (446)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~------~~v~~~~fSpd~~~lvtgs  415 (446)
                      .. ...+..+...+++.+++.... ..+..+|..+|+.+-++..+.      ..+..++..++|..+++.+
T Consensus       162 ~~-~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          162 KL-SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             EC-SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             EC-CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            11 223445666777777776654 468889988899988886543      3378999999999998874

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.40  E-value=2.7e-10  Score=107.09  Aligned_cols=253  Identities=10%  Similarity=0.052  Sum_probs=161.8

Q ss_pred             ceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeC
Q 013274           45 SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY  124 (446)
Q Consensus        45 ~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~  124 (446)
                      ....|.+.  ++++.++...+++|.+||.++++...            .+      ........+++.+ ++.++++...
T Consensus        45 ~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~------------~i------~~~~~p~~i~~~~-~g~lyv~~~~  103 (328)
T 3dsm_A           45 VAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVG------------RI------TGFTSPRYIHFLS-DEKAYVTQIW  103 (328)
T ss_dssp             CEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEE------------EE------ECCSSEEEEEEEE-TTEEEEEEBS
T ss_pred             cceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEE------------Ec------CCCCCCcEEEEeC-CCeEEEEECC
Confidence            35678775  46777888888999999998764310            00      0112344566655 5656566558


Q ss_pred             CCeEEEEECCCCeeeEEEecCC------ceEEeeeccCCCCceEEEEee-CCCcEEEEeCCCCceeeeeeCCCCCeEEEE
Q 013274          125 DHYVKVWDTNCTRVVMNFKMPG------KVYRTAMSPLAASHMLIAAGT-EDVQVRLCDIASGAISQTLSGHRDGIMTVE  197 (446)
Q Consensus       125 D~~i~iWd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~lasgs-~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~  197 (446)
                      ++.|.+||+.+++....+....      ....+++    .+..++++.. .++.|.++|+++++....+... .....+.
T Consensus       104 ~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~----~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~  178 (328)
T 3dsm_A          104 DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ----YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLV  178 (328)
T ss_dssp             CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE----ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCE
T ss_pred             CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE----ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceE
Confidence            9999999999999887777544      4444444    1334555554 4889999999999888777643 3346788


Q ss_pred             EecCCCeEEEEeeCC----------CcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCcc
Q 013274          198 WSTSSEWILVTGGCD----------GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQ  267 (446)
Q Consensus       198 ~s~~~~~~l~S~s~D----------g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (446)
                      ++|+++ +++++..+          +.|.++|..+++..+.+..                                    
T Consensus       179 ~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~------------------------------------  221 (328)
T 3dsm_A          179 MDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKF------------------------------------  221 (328)
T ss_dssp             ECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEEC------------------------------------
T ss_pred             EcCCCC-EEEEECCCccCCccccCCceEEEEECCCCeEEEEEec------------------------------------
Confidence            999887 45666554          7899999876543322210                                    


Q ss_pred             ccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeee
Q 013274          268 KRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVN  347 (446)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~  347 (446)
                                                             ........|+|+||+++|.....  .|.+||+.+++.....
T Consensus       222 ---------------------------------------~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~  260 (328)
T 3dsm_A          222 ---------------------------------------KLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRP  260 (328)
T ss_dssp             ---------------------------------------CTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSC
T ss_pred             ---------------------------------------CCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeee
Confidence                                                   00013678999999988876544  8999999876531111


Q ss_pred             eeEEEeecCCCeEEEEcCCCcEEEEeC------CCceEEEEeecCceEEEecccccceEEEEEc
Q 013274          348 FETVRLQTSKPIQLATTQDPAVVFVPC------MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFS  405 (446)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fS  405 (446)
                      +  .......+..+++.|+...++++.      ...+.+||.. ++.+.++..-. ....++|-
T Consensus       261 ~--~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~-~P~~~~~~  320 (328)
T 3dsm_A          261 F--LEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGI-IPGAFCWK  320 (328)
T ss_dssp             S--BCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEE-SEEEEEEE
T ss_pred             e--ecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEecc-CcceEEEe
Confidence            1  111123456678888544444443      2468888886 88777775432 23555553

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.39  E-value=9.9e-11  Score=110.08  Aligned_cols=210  Identities=10%  Similarity=0.169  Sum_probs=144.0

Q ss_pred             CCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEecc----ccccCccccEeEEEEeecCC
Q 013274           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDK----QHEHGHKYAISSAIWYPVDT  116 (446)
Q Consensus        41 ~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~gh~~~V~~~~~~~~~~  116 (446)
                      ++....+.|++++ +++++++.+.++.|++||.+.....           +..+..    ....++-.....+++.|.++
T Consensus        88 ~~~~~p~gia~d~-~g~l~v~d~~~~~v~~~~~~g~~~~-----------~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g  155 (329)
T 3fvz_A           88 NLFYLPHGLSIDT-DGNYWVTDVALHQVFKLDPHSKEGP-----------LLILGRSMQPGSDQNHFCQPTDVAVEPSTG  155 (329)
T ss_dssp             TTCSSEEEEEECT-TSCEEEEETTTTEEEEECTTCSSCC-----------SEEESBTTBCCCSTTCCSSEEEEEECTTTC
T ss_pred             CccCCceEEEECC-CCCEEEEECCCCEEEEEeCCCCeEE-----------EEEecccCCCCCCccccCCCcEEEEeCCCC
Confidence            4455788999996 6778999999999999997543100           000000    00123444567777876577


Q ss_pred             cEEEEEe-CCCeEEEEECCCCeeeEEEecCC-----------ceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceee
Q 013274          117 GLFVTGS-YDHYVKVWDTNCTRVVMNFKMPG-----------KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ  184 (446)
Q Consensus       117 ~~l~s~s-~D~~i~iWd~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~  184 (446)
                      .++++.+ .++.|++|| .++..+..+...+           ....+++.+.  ...++++...++.|++||.++++.+.
T Consensus       156 ~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~--~g~l~v~d~~~~~I~~~~~~~G~~~~  232 (329)
T 3fvz_A          156 AVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH--LDQLCVADRENGRIQCFKTDTKEFVR  232 (329)
T ss_dssp             CEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETT--TTEEEEEETTTTEEEEEETTTCCEEE
T ss_pred             eEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC--CCEEEEEECCCCEEEEEECCCCcEEE
Confidence            7888886 699999999 4566665553211           1456666653  24677888889999999999898888


Q ss_pred             eee--CCCCCeEEEEEecCCCeEEEE-------eeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeecccccc
Q 013274          185 TLS--GHRDGIMTVEWSTSSEWILVT-------GGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSA  255 (446)
Q Consensus       185 ~l~--~h~~~v~sv~~s~~~~~~l~S-------~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (446)
                      .+.  ++...+.+++|+| + .++++       .+.+.+|++||+.+++.+..+..                        
T Consensus       233 ~~~~~~~~~~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~------------------------  286 (329)
T 3fvz_A          233 EIKHASFGRNVFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKP------------------------  286 (329)
T ss_dssp             EECCTTTTTCEEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECC------------------------
T ss_pred             EEeccccCCCcceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcC------------------------
Confidence            774  5667889999998 2 22333       23345899999877655443310                        


Q ss_pred             CCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEE
Q 013274          256 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRL  335 (446)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~l  335 (446)
                                                                       ..++...+..|+|+|+|..+++...+++|++
T Consensus       287 -------------------------------------------------~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~  317 (329)
T 3fvz_A          287 -------------------------------------------------VRKHFDMPHDIVASEDGTVYIGDAHTNTVWK  317 (329)
T ss_dssp             -------------------------------------------------SSSCCSSEEEEEECTTSEEEEEESSSCCEEE
T ss_pred             -------------------------------------------------CCCccCCeeEEEECCCCCEEEEECCCCEEEE
Confidence                                                             0123345788999999998999999999999


Q ss_pred             EecCc
Q 013274          336 WDVES  340 (446)
Q Consensus       336 Wd~~~  340 (446)
                      |++..
T Consensus       318 ~~~~~  322 (329)
T 3fvz_A          318 FTLTE  322 (329)
T ss_dssp             EEEEE
T ss_pred             EeCCc
Confidence            99764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.37  E-value=3.2e-09  Score=101.47  Aligned_cols=242  Identities=13%  Similarity=0.063  Sum_probs=152.4

Q ss_pred             EEEEeecCCcEEEEEe----------CCCeEEEEECCCCeeeEEEecC--------CceEEeeeccCCCCceEEEEee-C
Q 013274          108 SAIWYPVDTGLFVTGS----------YDHYVKVWDTNCTRVVMNFKMP--------GKVYRTAMSPLAASHMLIAAGT-E  168 (446)
Q Consensus       108 ~~~~~~~~~~~l~s~s----------~D~~i~iWd~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~lasgs-~  168 (446)
                      .+.++| |+++++.+.          .+++|.+||+.+.+.+..+...        .....+.++++.   .+|+.++ .
T Consensus        70 ~i~~sp-Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG---~~l~v~n~~  145 (373)
T 2mad_H           70 NPVAAH-SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNN---ADLLFFQFA  145 (373)
T ss_pred             CeEECC-CCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCC---CEEEEEecC
Confidence            345665 788877775          4788999999988888777654        123456677653   3455544 2


Q ss_pred             -CCcEEEEeCCCCceeee-eeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccc
Q 013274          169 -DVQVRLCDIASGAISQT-LSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRK  246 (446)
Q Consensus       169 -d~~v~vwd~~~~~~~~~-l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (446)
                       ++.|.++| ++++.+.. +.-. +   ++.+.|+++..+++.+.||++.++|+ +++............          
T Consensus       146 ~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~----------  209 (373)
T 2mad_H          146 AGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLT----------  209 (373)
T ss_pred             CCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEecccccc----------
Confidence             57899999 99988777 6432 1   24556676666778889999999998 665332110000000          


Q ss_pred             eeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccC-eEEEEEccCCCEEE
Q 013274          247 VSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGA-VTGLKVTEDGMYLL  325 (446)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~fs~dg~~l~  325 (446)
                                                                                  + ..+ .....|.+++..++
T Consensus       210 ------------------------------------------------------------~-~~p~~~~~~~~~~~~~~~  228 (373)
T 2mad_H          210 ------------------------------------------------------------A-AQNLLTQPAQANKSGRIV  228 (373)
T ss_pred             ------------------------------------------------------------C-CcceeecceeEecCCEEE
Confidence                                                                        0 000 11234555554333


Q ss_pred             EeecCCcEEEEecCcCceeee-eeeE-------EEeecCCCeEEEEcCCCcEEEEeCC-----------CceEEEEeecC
Q 013274          326 SAGSDSRIRLWDVESGRNTLV-NFET-------VRLQTSKPIQLATTQDPAVVFVPCM-----------TAVKAFDIWSG  386 (446)
Q Consensus       326 sgs~D~~i~lWd~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~d~~~~  386 (446)
                      -.+..+.+.+.|+.+...... .+..       ..........+++++++..+++...           +.+.++|..++
T Consensus       229 ~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~  308 (373)
T 2mad_H          229 WPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG  308 (373)
T ss_pred             EEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC
Confidence            333677888888875432211 1110       0011122333678888888777542           36888999999


Q ss_pred             ceEEEecccccceEEEEEcCCCC-EEEEee-CCCcEEEeCCCCCCCC
Q 013274          387 KTCLTFRGHYEYVNCCCFSSQDQ-ELYTGG-NDRQILVWCPSRHISD  431 (446)
Q Consensus       387 ~~~~~l~gH~~~v~~~~fSpd~~-~lvtgs-~D~~v~vW~~~~~~~~  431 (446)
                      +.+.++..-. ...+++|||||+ +|+++. .+++|.|+|+.+.+..
T Consensus       309 ~vv~~i~~g~-~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv  354 (373)
T 2mad_H          309 QTSSQISLGH-DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQD  354 (373)
T ss_pred             EEEEEEECCC-CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence            9888875332 579999999999 788877 5899999999877643

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.37  E-value=5.4e-10  Score=102.49  Aligned_cols=203  Identities=13%  Similarity=0.183  Sum_probs=136.6

Q ss_pred             CccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecC-------CceEEeeeccCCCCceEEEEeeC-CCcE
Q 013274          101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-------GKVYRTAMSPLAASHMLIAAGTE-DVQV  172 (446)
Q Consensus       101 gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~lasgs~-d~~v  172 (446)
                      +|-..+.++++.+ ++.++++.+.++.|++||.+ +..+..+...       .....+++..  .+..++++... ++.|
T Consensus        27 g~~~~p~~v~~~~-~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~--~~g~l~v~~~~~~~~i  102 (286)
T 1q7f_A           27 GQFTEPSGVAVNA-QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVR--NSGDIIVTERSPTHQI  102 (286)
T ss_dssp             TCBSCEEEEEECT-TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEET--TTTEEEEEECGGGCEE
T ss_pred             CccCCCceEEECC-CCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEc--CCCeEEEEcCCCCCEE
Confidence            4555666777765 67788888889999999987 5555555421       1345555522  23445555533 7899


Q ss_pred             EEEeCCCCceeeeee-CCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeecc
Q 013274          173 RLCDIASGAISQTLS-GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISK  251 (446)
Q Consensus       173 ~vwd~~~~~~~~~l~-~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (446)
                      ++|| .+++.+..+. .+...+..++++|+++ ++++...++.|.+||.. +..+..+..                    
T Consensus       103 ~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~--------------------  159 (286)
T 1q7f_A          103 QIYN-QYGQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGC--------------------  159 (286)
T ss_dssp             EEEC-TTSCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEEC--------------------
T ss_pred             EEEC-CCCcEEEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCC-CCEEEEeCC--------------------
Confidence            9999 5666666664 3456789999999986 56777778999999954 222111100                    


Q ss_pred             ccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCC
Q 013274          252 SLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS  331 (446)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~  331 (446)
                                                                            .++...+..|+++++|.++++.+.++
T Consensus       160 ------------------------------------------------------~~~~~~p~~i~~~~~g~l~v~~~~~~  185 (286)
T 1q7f_A          160 ------------------------------------------------------SKHLEFPNGVVVNDKQEIFISDNRAH  185 (286)
T ss_dssp             ------------------------------------------------------TTTCSSEEEEEECSSSEEEEEEGGGT
T ss_pred             ------------------------------------------------------CCccCCcEEEEECCCCCEEEEECCCC
Confidence                                                                  01123478899999999888888899


Q ss_pred             cEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEE
Q 013274          332 RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQEL  411 (446)
Q Consensus       332 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~l  411 (446)
                      .|++||.... . .   ....                                       ..++...+..++|+|+|+++
T Consensus       186 ~i~~~~~~g~-~-~---~~~~---------------------------------------~~g~~~~p~~i~~d~~G~l~  221 (286)
T 1q7f_A          186 CVKVFNYEGQ-Y-L---RQIG---------------------------------------GEGITNYPIGVGINSNGEIL  221 (286)
T ss_dssp             EEEEEETTCC-E-E---EEES---------------------------------------CTTTSCSEEEEEECTTCCEE
T ss_pred             EEEEEcCCCC-E-E---EEEc---------------------------------------cCCccCCCcEEEECCCCCEE
Confidence            9999997432 1 0   0000                                       01233567889999999998


Q ss_pred             EEeeCCC-cEEEeCCCCC
Q 013274          412 YTGGNDR-QILVWCPSRH  428 (446)
Q Consensus       412 vtgs~D~-~v~vW~~~~~  428 (446)
                      ++...++ .|.+|+++..
T Consensus       222 v~~~~~~~~i~~~~~~g~  239 (286)
T 1q7f_A          222 IADNHNNFNLTIFTQDGQ  239 (286)
T ss_dssp             EEECSSSCEEEEECTTSC
T ss_pred             EEeCCCCEEEEEECCCCC
Confidence            8888886 9999997654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.36  E-value=1.6e-10  Score=104.88  Aligned_cols=238  Identities=10%  Similarity=0.030  Sum_probs=150.1

Q ss_pred             cEeEEEEeecCCcEEE-EEeCCCeEEEEECCCCeeeEEEecC--CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc
Q 013274          105 AISSAIWYPVDTGLFV-TGSYDHYVKVWDTNCTRVVMNFKMP--GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA  181 (446)
Q Consensus       105 ~V~~~~~~~~~~~~l~-s~s~D~~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~  181 (446)
                      ...++.+.+ ++.+++ +.+.++.|.+||..+..... +...  .....+++.+.   ..++++.. ++.|.+||.+++.
T Consensus        25 ~p~~i~~~~-~g~l~v~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~p~~i~~~~~---g~l~v~~~-~~~i~~~d~~~~~   98 (270)
T 1rwi_B           25 SPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTTV-LPFNGLYQPQGLAVDGA---GTVYVTDF-NNRVVTLAAGSNN   98 (270)
T ss_dssp             CEEEEEECT-TCCEEEEECSSSCEEEEECC-----EE-CCCCSCCSCCCEEECTT---CCEEEEET-TTEEEEECTTCSC
T ss_pred             CccceEECC-CCCEEEEccCCCCcEEEecCCCcccce-EeeCCcCCcceeEECCC---CCEEEEcC-CCEEEEEeCCCce
Confidence            344555554 677777 55778999999976544321 2111  23344555543   33555554 8899999987765


Q ss_pred             eeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCc
Q 013274          182 ISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSV  261 (446)
Q Consensus       182 ~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (446)
                      ...........+..+++++++. ++++...++.|.+||..+......                                 
T Consensus        99 ~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~---------------------------------  144 (270)
T 1rwi_B           99 QTVLPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVL---------------------------------  144 (270)
T ss_dssp             CEECCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSCEEC---------------------------------
T ss_pred             EeeeecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCceeEee---------------------------------
Confidence            4322223336789999999886 567777778899886432110000                                 


Q ss_pred             CCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcC
Q 013274          262 KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG  341 (446)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~  341 (446)
                                                                 .......+.+|+++++|+++++...++.|.+||....
T Consensus       145 -------------------------------------------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~  181 (270)
T 1rwi_B          145 -------------------------------------------PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN  181 (270)
T ss_dssp             -------------------------------------------CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred             -------------------------------------------ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC
Confidence                                                       0001123566889999998888878889999998765


Q ss_pred             ceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeC-CCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcE
Q 013274          342 RNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQI  420 (446)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v  420 (446)
                      .......    .....+..+++.+++.+.++.. ...+..|+............+...+.+++|+|||+++++.+.++.|
T Consensus       182 ~~~~~~~----~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v  257 (270)
T 1rwi_B          182 NQVVLPF----TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRV  257 (270)
T ss_dssp             CEEECCC----SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEE
T ss_pred             ceEeecc----cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEE
Confidence            4211100    0113455678888876555544 3578888875544333333455678999999999999999999999


Q ss_pred             EEeCCCCCC
Q 013274          421 LVWCPSRHI  429 (446)
Q Consensus       421 ~vW~~~~~~  429 (446)
                      ++++++.+.
T Consensus       258 ~~~~~~~~~  266 (270)
T 1rwi_B          258 VKLTSLEHH  266 (270)
T ss_dssp             EEECCCGGG
T ss_pred             EEEcCCCcc
Confidence            999987554

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.35  E-value=1.2e-10  Score=121.30  Aligned_cols=159  Identities=12%  Similarity=0.109  Sum_probs=104.2

Q ss_pred             CCccceeEEEeecCCCCEEEEeeCCC-----cEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecC
Q 013274           41 PHKGSINSLQVDLTEERYLLSGASDS-----SVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (446)
Q Consensus        41 ~H~~~v~~l~~s~~~~~~l~s~s~Dg-----~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~  115 (446)
                      +|+..+.+++||| +|++|+.++.++     +|++||+++++...          . ..      .+ ..+..+.|+| |
T Consensus       122 ~~~~~~~~~~~SP-Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~----------~-~~------~~-~~~~~~~wsp-D  181 (710)
T 2xdw_A          122 DGTVALRGYAFSE-DGEYFAYGLSASGSDWVTIKFMKVDGAKELP----------D-VL------ER-VKFSCMAWTH-D  181 (710)
T ss_dssp             TSCEEEEEEEECT-TSSEEEEEEEETTCSCEEEEEEETTTTEEEE----------E-EE------EE-ECSCCEEECT-T
T ss_pred             CCCEEEEEEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCc----------c-cc------cC-cccceEEEEe-C
Confidence            4556788999996 678888775543     89999998764310          0 00      01 1144567876 8


Q ss_pred             CcEEEEEeCCCe----------------EEEEECCCCeee--EEEec---CCceEEeeeccCCCCceEEEEeeC-----C
Q 013274          116 TGLFVTGSYDHY----------------VKVWDTNCTRVV--MNFKM---PGKVYRTAMSPLAASHMLIAAGTE-----D  169 (446)
Q Consensus       116 ~~~l~s~s~D~~----------------i~iWd~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~lasgs~-----d  169 (446)
                      ++.|+.++.|..                |.+|++.+++..  ..+..   ........+++++   ..|+.++.     +
T Consensus       182 g~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg---~~l~~~~~~~~~~~  258 (710)
T 2xdw_A          182 GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDG---RYVLLSIREGCDPV  258 (710)
T ss_dssp             SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS---CEEEEEEECSSSSC
T ss_pred             CCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCC---CEEEEEEEccCCCc
Confidence            888988888876                999999887632  22232   2234567777754   34444332     5


Q ss_pred             CcEEEEeCCC------Cc-eeeeeeCCCCCeEEEEEecCCCeEEEEeeCC---CcEEEEEccCC
Q 013274          170 VQVRLCDIAS------GA-ISQTLSGHRDGIMTVEWSTSSEWILVTGGCD---GAIRFWDIRRA  223 (446)
Q Consensus       170 ~~v~vwd~~~------~~-~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~D---g~I~iWd~~~~  223 (446)
                      ..|++||+.+      +. ....+..+...+.. .|+|+++.+++.+..+   +.|.+||+.++
T Consensus       259 ~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~  321 (710)
T 2xdw_A          259 NRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDP  321 (710)
T ss_dssp             CEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSC
T ss_pred             cEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence            7899999987      53 46677777777665 4788888766555443   36888887653

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.35  E-value=1e-09  Score=101.30  Aligned_cols=242  Identities=12%  Similarity=0.021  Sum_probs=149.2

Q ss_pred             eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (446)
Q Consensus        39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~  118 (446)
                      +..+.....++.|++++..+++++..++.|..||.+++ ..           .       ...+...+.++.+.+ ++.+
T Consensus        23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~-----------~-------~~~~~~~~~~l~~~~-dg~l   82 (296)
T 3e5z_A           23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LS-----------P-------EMHPSHHQNGHCLNK-QGHL   82 (296)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EE-----------E-------EESSCSSEEEEEECT-TCCE
T ss_pred             EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eE-----------E-------EECCCCCcceeeECC-CCcE
Confidence            34455667899999754338889999999999998754 10           0       012334566667665 7778


Q ss_pred             EEEEeCCCeEEEEECCCCeeeEEEec-CC----ceEEeeeccCCCCceEEEE----ee-------------CCCcEEEEe
Q 013274          119 FVTGSYDHYVKVWDTNCTRVVMNFKM-PG----KVYRTAMSPLAASHMLIAA----GT-------------EDVQVRLCD  176 (446)
Q Consensus       119 l~s~s~D~~i~iWd~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~las----gs-------------~d~~v~vwd  176 (446)
                      +++...++.|.+||..+++....... .+    .++.+++.+.   ..++++    |+             ..+.|..+|
T Consensus        83 ~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~---G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~  159 (296)
T 3e5z_A           83 IACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPD---GSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLA  159 (296)
T ss_dssp             EEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTT---SCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEEC
T ss_pred             EEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCC---CCEEEECCccccccccccccccccCCCcEEEEEC
Confidence            87777789999999987775433221 11    1234555553   345665    32             123555555


Q ss_pred             CCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCcee-EEeecccccccCCCcccccceeecccccc
Q 013274          177 IASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCF-RVLDQSQSQLGRRPPLLKRKVSISKSLSA  255 (446)
Q Consensus       177 ~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (446)
                      .. +. ...+..+......++|+|+++.+ ++.+.++.|.+||+...+.+ ....                         
T Consensus       160 ~~-g~-~~~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~-------------------------  211 (296)
T 3e5z_A          160 PD-GT-LSAPIRDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGV-------------------------  211 (296)
T ss_dssp             TT-SC-EEEEECCCSSEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEE-------------------------
T ss_pred             CC-CC-EEEeecCCCCCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCe-------------------------
Confidence            54 33 44455667778999999999865 88888899999998621111 0000                         


Q ss_pred             CCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEE
Q 013274          256 GQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRL  335 (446)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~l  335 (446)
                                                  .         .           ..+.+.+.+|+++++|+++++.  ++.|.+
T Consensus       212 ----------------------------~---------~-----------~~~~~~p~~i~~d~~G~l~v~~--~~~v~~  241 (296)
T 3e5z_A          212 ----------------------------H---------F-----------TVEPGKTDGLRVDAGGLIWASA--GDGVHV  241 (296)
T ss_dssp             ----------------------------E---------E-----------CCSSSCCCSEEEBTTSCEEEEE--TTEEEE
T ss_pred             ----------------------------E---------e-----------eCCCCCCCeEEECCCCCEEEEc--CCeEEE
Confidence                                        0         0           0011234568899999977766  788999


Q ss_pred             EecCcCceeeeeeeEEEeecCCCeEEEE-cCCCcEEEEeCCCceEEEEeecCc
Q 013274          336 WDVESGRNTLVNFETVRLQTSKPIQLAT-TQDPAVVFVPCMTAVKAFDIWSGK  387 (446)
Q Consensus       336 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~  387 (446)
                      ||.. ++. +   ........ +..+++ .+++..+++.+...+..++..+.+
T Consensus       242 ~~~~-g~~-~---~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~~~~~~  288 (296)
T 3e5z_A          242 LTPD-GDE-L---GRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIETNVRG  288 (296)
T ss_dssp             ECTT-SCE-E---EEEECSSC-CCEEEEESTTSCEEEEEETTEEEEEECSCCB
T ss_pred             ECCC-CCE-E---EEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEEEccccc
Confidence            9986 332 1   12222223 556667 577777877766554444544444

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.34  E-value=9.6e-12  Score=119.51  Aligned_cols=262  Identities=8%  Similarity=0.023  Sum_probs=134.9

Q ss_pred             EeEEEEeecCCcEEEEEeCC---CeEEEEECCCCeeeEEEecCCceEE-eeeccCCCCceEEEEeeCCCcEEEEeCCCCc
Q 013274          106 ISSAIWYPVDTGLFVTGSYD---HYVKVWDTNCTRVVMNFKMPGKVYR-TAMSPLAASHMLIAAGTEDVQVRLCDIASGA  181 (446)
Q Consensus       106 V~~~~~~~~~~~~l~s~s~D---~~i~iWd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~  181 (446)
                      +..+.++| ++++|+..+.+   ..|.+||+.+++............. ..++|   +...|+..+.++.|++||+.+++
T Consensus        38 ~~~~~~Sp-dG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~sp---dg~~l~~~~~~~~l~~~d~~~~~  113 (396)
T 3c5m_A           38 FYQKCFTQ-DGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFIST---DERAFFYVKNELNLMKVDLETLE  113 (396)
T ss_dssp             TTSCCBCT-TSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECT---TSSEEEEEETTTEEEEEETTTCC
T ss_pred             eecCcCCC-CCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECC---CCCEEEEEEcCCcEEEEECCCCC
Confidence            33445665 78887766543   4788889988775433222222111 34555   44578888888899999999987


Q ss_pred             eeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCc
Q 013274          182 ISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSV  261 (446)
Q Consensus       182 ~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (446)
                      .......+..      |+|+++. |+..+.+....+|+....         ...-+.       ..........      
T Consensus       114 ~~~~~~~~~~------~~~~g~~-l~~~~~~~~~~~~~~~~~---------~spdg~-------~~~~~~~~~~------  164 (396)
T 3c5m_A          114 EQVIYTVDEE------WKGYGTW-VANSDCTKLVGIEILKRD---------WQPLTS-------WEKFAEFYHT------  164 (396)
T ss_dssp             EEEEEECCTT------EEEEEEE-EECTTSSEEEEEEEEGGG---------CCCCCS-------HHHHHHHHHT------
T ss_pred             cEEEEecccc------cCCCCCE-EEeccCCccccccccccc---------cCCCCc-------ceeeeeeccC------
Confidence            6555554443      4455543 344444444444431000         000000       0000000000      


Q ss_pred             CCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEcc-CCCEEEEeecC------CcEE
Q 013274          262 KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE-DGMYLLSAGSD------SRIR  334 (446)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~sgs~D------~~i~  334 (446)
                                ...    ..+..+....        +.   ......+...+..+.|+| +|..|+..+.+      ..|.
T Consensus       165 ----------~~~----~~l~~~d~~~--------g~---~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~  219 (396)
T 3c5m_A          165 ----------NPT----CRLIKVDIET--------GE---LEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMW  219 (396)
T ss_dssp             ----------CCC----EEEEEEETTT--------CC---EEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCE
T ss_pred             ----------CCc----ceEEEEECCC--------Cc---EEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEE
Confidence                      000    0000000000        00   000112344578899999 78876665543      4688


Q ss_pred             EEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeC----CCc--eEEEEeecCceEEEecccccceEEEEEcC-C
Q 013274          335 LWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC----MTA--VKAFDIWSGKTCLTFRGHYEYVNCCCFSS-Q  407 (446)
Q Consensus       335 lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~d~~~~~~~~~l~gH~~~v~~~~fSp-d  407 (446)
                      +||+.++....  +.. .........++++|++..++...    ...  +.+||+.+++...... ... .. ++|+| |
T Consensus       220 ~~d~~~~~~~~--l~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~~~s~~d  293 (396)
T 3c5m_A          220 LVNEDGSNVRK--IKE-HAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPP-CS-HLMSNFD  293 (396)
T ss_dssp             EEETTSCCCEE--SSC-CCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS-EE-EEEECSS
T ss_pred             EEECCCCceeE--eec-cCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CCC-CC-CCccCCC
Confidence            88887653211  100 00001233467889887554432    123  8889988776533221 111 23 89999 9


Q ss_pred             CCEEEEee----------------CCCcEEEeCCCCCCCC
Q 013274          408 DQELYTGG----------------NDRQILVWCPSRHISD  431 (446)
Q Consensus       408 ~~~lvtgs----------------~D~~v~vW~~~~~~~~  431 (446)
                      |++|++++                .+..|.+|++.+....
T Consensus       294 g~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~  333 (396)
T 3c5m_A          294 GSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ  333 (396)
T ss_dssp             SSEEEEEECCC----------CCCCCCEEEEEETTTTBCC
T ss_pred             CceEEEecCCcceeeccccccccCCCCcEEEEecccCceE
Confidence            99998765                3478999998766543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.33  E-value=5.3e-10  Score=102.25  Aligned_cols=144  Identities=12%  Similarity=0.123  Sum_probs=98.7

Q ss_pred             CCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCcc-ccEeEEEEeecCCcEEEEEeCCCeEEEEECC
Q 013274           56 ERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHK-YAISSAIWYPVDTGLFVTGSYDHYVKVWDTN  134 (446)
Q Consensus        56 ~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~-~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~  134 (446)
                      +++|++++.|+.|.+||.++++..            ...     ..+. ..+.++.+.| ++++++  +.++.|..||. 
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~------------w~~-----~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-   63 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIV------------WEY-----PLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-   63 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEE------------EEE-----ECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEE------------EEe-----CCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-
Confidence            689999999999999998776521            111     1121 2344555665 788888  45789999999 


Q ss_pred             CCeeeEEEecCC--ceEEeeeccCCCCceEEEEeeC-CCcEEEEeCCCCceeeeee------CCCCCeEEEEEecCCCeE
Q 013274          135 CTRVVMNFKMPG--KVYRTAMSPLAASHMLIAAGTE-DVQVRLCDIASGAISQTLS------GHRDGIMTVEWSTSSEWI  205 (446)
Q Consensus       135 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~lasgs~-d~~v~vwd~~~~~~~~~l~------~h~~~v~sv~~s~~~~~~  205 (446)
                      +++.+..+....  .+..+.+.+   +..++++.+. ++.|..+|. +|+.++.+.      ++......+++.++++. 
T Consensus        64 ~G~~~W~~~~~~~~~~~~~~~~~---dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~-  138 (276)
T 3no2_A           64 DGRELWNIAAPAGCEMQTARILP---DGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNY-  138 (276)
T ss_dssp             TSCEEEEEECCTTCEEEEEEECT---TSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCE-
T ss_pred             CCCEEEEEcCCCCccccccEECC---CCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCE-
Confidence            788888887642  455555554   3346666665 677888886 666665553      22234556778888874 


Q ss_pred             EEEeeCCCcEEEEEccCCcee
Q 013274          206 LVTGGCDGAIRFWDIRRAGCF  226 (446)
Q Consensus       206 l~S~s~Dg~I~iWd~~~~~~~  226 (446)
                      +++...++.|..||.. ++.+
T Consensus       139 lv~~~~~~~v~~~d~~-G~~~  158 (276)
T 3no2_A          139 LVPLFATSEVREIAPN-GQLL  158 (276)
T ss_dssp             EEEETTTTEEEEECTT-SCEE
T ss_pred             EEEecCCCEEEEECCC-CCEE
Confidence            6888899999999986 5543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.33  E-value=2.8e-10  Score=106.82  Aligned_cols=228  Identities=12%  Similarity=0.092  Sum_probs=147.2

Q ss_pred             CCcEEEEEeCCCeEEEEECCCCeeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCe
Q 013274          115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI  193 (446)
Q Consensus       115 ~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v  193 (446)
                      ++..+++.+.++.++.|.   +.....+.. ......+++.+.   ..+++++..++.|.+||.++++.......+...+
T Consensus        16 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~   89 (333)
T 2dg1_A           16 KSNSAVPIISESELQTIT---AEPWLEISKKGLQLEGLNFDRQ---GQLFLLDVFEGNIFKINPETKEIKRPFVSHKANP   89 (333)
T ss_dssp             GGGCSSCCCCGGGSCEEE---CEEEEEEESSCCCEEEEEECTT---SCEEEEETTTCEEEEECTTTCCEEEEEECSSSSE
T ss_pred             CccceeEEeecccCcccc---cceeEEEeccCccccCcEECCC---CCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCc
Confidence            444556667788899992   333333332 233456667653   3477788888999999999887665554567889


Q ss_pred             EEEEEecCCCeEEEEeeCC----CcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCcccc
Q 013274          194 MTVEWSTSSEWILVTGGCD----GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKR  269 (446)
Q Consensus       194 ~sv~~s~~~~~~l~S~s~D----g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (446)
                      .+++++|+++ ++++...+    +.|.+||..++.....+..                                      
T Consensus        90 ~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~--------------------------------------  130 (333)
T 2dg1_A           90 AAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNLQDIIED--------------------------------------  130 (333)
T ss_dssp             EEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSCEEEECS--------------------------------------
T ss_pred             ceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCCEEEEEEcc--------------------------------------
Confidence            9999999987 45666655    6899998765432111000                                      


Q ss_pred             ccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeec------CCcEEEEecCcCce
Q 013274          270 SANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS------DSRIRLWDVESGRN  343 (446)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~------D~~i~lWd~~~~~~  343 (446)
                                                          ..+...+..++++|+|.++++...      .+.|..+|..+++.
T Consensus       131 ------------------------------------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~  174 (333)
T 2dg1_A          131 ------------------------------------LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV  174 (333)
T ss_dssp             ------------------------------------SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE
T ss_pred             ------------------------------------CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEE
Confidence                                                001234788999999998887654      24566666554432


Q ss_pred             eeeeeeEEEeecCCCeEEEEcCCCcEEEEeC--CCceEEEEeec-CceEE--------EecccccceEEEEEcCCCCEEE
Q 013274          344 TLVNFETVRLQTSKPIQLATTQDPAVVFVPC--MTAVKAFDIWS-GKTCL--------TFRGHYEYVNCCCFSSQDQELY  412 (446)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~-~~~~~--------~l~gH~~~v~~~~fSpd~~~lv  412 (446)
                      ..  +.   .....+..+++++++..+++..  ...+.+|++.+ +....        .+.++ ..+..++++++|++++
T Consensus       175 ~~--~~---~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v  248 (333)
T 2dg1_A          175 TP--II---QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYV  248 (333)
T ss_dssp             EE--EE---EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEE
T ss_pred             EE--ee---cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEE
Confidence            11  11   1122345678888887665543  35788899863 33322        22333 4678999999999999


Q ss_pred             EeeCCCcEEEeCCCCCC
Q 013274          413 TGGNDRQILVWCPSRHI  429 (446)
Q Consensus       413 tgs~D~~v~vW~~~~~~  429 (446)
                      +...++.|.+|+++...
T Consensus       249 ~~~~~~~v~~~d~~g~~  265 (333)
T 2dg1_A          249 AMYGQGRVLVFNKRGYP  265 (333)
T ss_dssp             EEETTTEEEEECTTSCE
T ss_pred             EEcCCCEEEEECCCCCE
Confidence            88888999999996543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.32  E-value=9.2e-11  Score=121.89  Aligned_cols=158  Identities=11%  Similarity=0.026  Sum_probs=101.4

Q ss_pred             CCccceeEEEeecCCCCEEE-----EeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecC
Q 013274           41 PHKGSINSLQVDLTEERYLL-----SGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (446)
Q Consensus        41 ~H~~~v~~l~~s~~~~~~l~-----s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~  115 (446)
                      +|+..+.+++||| +|++||     +|+.+.+|++||+++++... ...              ..+.+  ...+.|+| |
T Consensus       118 ~~~~~~~~~~~SP-DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-~~~--------------~~~~~--~~~~~wsp-D  178 (695)
T 2bkl_A          118 DGTVSLGTWAVSW-DGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-VDV--------------IEGGK--YATPKWTP-D  178 (695)
T ss_dssp             SSCEEEEEEEECT-TSSEEEEEEEETTCSCCEEEEEETTTCCBCS-SCC--------------BSCCT--TCCCEECT-T
T ss_pred             CCCEEEEEEEECC-CCCEEEEEECCCCCceEEEEEEECCCCCCcC-Ccc--------------cCccc--ccceEEec-C
Confidence            5666899999996 678888     56666789999998875320 000              01111  13456776 8


Q ss_pred             CcEEEEEeCCCe-------------EEEEECCCCee--eEEEecC---CceEEeeeccCCCCceEEEEeeCCC----cEE
Q 013274          116 TGLFVTGSYDHY-------------VKVWDTNCTRV--VMNFKMP---GKVYRTAMSPLAASHMLIAAGTEDV----QVR  173 (446)
Q Consensus       116 ~~~l~s~s~D~~-------------i~iWd~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~lasgs~d~----~v~  173 (446)
                      ++.|+.++.|..             |++|++.+++.  ...+...   .......+++++   .+|+.++.++    .|+
T Consensus       179 g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG---~~l~~~~~~~~~~~~l~  255 (695)
T 2bkl_A          179 SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDG---KYLFVYILRGWSENDVY  255 (695)
T ss_dssp             SSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTS---CCEEEEEEETTTEEEEE
T ss_pred             CCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCC---CEEEEEEeCCCCceEEE
Confidence            889999998877             99999988762  2223221   345667788754   3444444333    677


Q ss_pred             EEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEee---CCCcEEEEEccCC
Q 013274          174 LCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGG---CDGAIRFWDIRRA  223 (446)
Q Consensus       174 vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s---~Dg~I~iWd~~~~  223 (446)
                      +||..++. ...+..+...+....+ ++++ +++++.   .++.|.+||+.++
T Consensus       256 ~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~  305 (695)
T 2bkl_A          256 WKRPGEKD-FRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKP  305 (695)
T ss_dssp             EECTTCSS-CEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBC
T ss_pred             EEcCCCCc-eEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCC
Confidence            77765554 4455566666677666 5666 566655   3578999987653

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.32  E-value=1e-09  Score=114.92  Aligned_cols=242  Identities=12%  Similarity=-0.002  Sum_probs=140.3

Q ss_pred             CccccEeEEEEeecCCcEEEEEeCC-----CeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCC-----
Q 013274          101 GHKYAISSAIWYPVDTGLFVTGSYD-----HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV-----  170 (446)
Q Consensus       101 gh~~~V~~~~~~~~~~~~l~s~s~D-----~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~-----  170 (446)
                      +|...+....|+| |+++||.++.+     .+|++||+++++.+...........++++++    ..|+.++.+.     
T Consensus       160 ~~~~~~~~~~~SP-DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD----~~l~~~~~~~~~~~~  234 (741)
T 1yr2_A          160 DGATALDAWAASD-DGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN----DALLYSRFAEPKEGQ  234 (741)
T ss_dssp             ---EEEEEEEECT-TSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT----SEEEEEECCCC----
T ss_pred             CCCEEEEeEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC----CEEEEEEecCccccc
Confidence            4555677778886 88888876654     4699999999887543111111134566664    3455555544     


Q ss_pred             ---------cEEEEeCCCCce----eeeeeCCCCCeEEEEEecCCCeEEEEeeC----CCcEEEEEccCC--ceeEEeec
Q 013274          171 ---------QVRLCDIASGAI----SQTLSGHRDGIMTVEWSTSSEWILVTGGC----DGAIRFWDIRRA--GCFRVLDQ  231 (446)
Q Consensus       171 ---------~v~vwd~~~~~~----~~~l~~h~~~v~sv~~s~~~~~~l~S~s~----Dg~I~iWd~~~~--~~~~~~~~  231 (446)
                               .|++|++.++..    +.....|...+.++.|+|+++++++++..    ...|.+||+.++  .++..+. 
T Consensus       235 ~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~-  313 (741)
T 1yr2_A          235 AFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI-  313 (741)
T ss_dssp             ----CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE-
T ss_pred             ccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec-
Confidence                     389999987752    22223344468899999999976554432    347899988654  1011110 


Q ss_pred             ccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccC
Q 013274          232 SQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGA  311 (446)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  311 (446)
                                                                                                 .+...
T Consensus       314 ---------------------------------------------------------------------------~~~~~  318 (741)
T 1yr2_A          314 ---------------------------------------------------------------------------PDLKA  318 (741)
T ss_dssp             ---------------------------------------------------------------------------CSSSS
T ss_pred             ---------------------------------------------------------------------------CCCCc
Confidence                                                                                       01111


Q ss_pred             eEEEEEccCCCEEEEeec----CCcEEEEecCcCc-eeeeeeeEEEeecCCCe-EEEEcCCCcEEEEeC-CCceEEEEee
Q 013274          312 VTGLKVTEDGMYLLSAGS----DSRIRLWDVESGR-NTLVNFETVRLQTSKPI-QLATTQDPAVVFVPC-MTAVKAFDIW  384 (446)
Q Consensus       312 v~~l~fs~dg~~l~sgs~----D~~i~lWd~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~d~~  384 (446)
                      +... ++|+|..|+..+.    ++.|.+||+.++. ...    .+........ .+.+. +..+++... ....++|.+.
T Consensus       319 ~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~----~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~  392 (741)
T 1yr2_A          319 QWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFD----TVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFD  392 (741)
T ss_dssp             CEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEE----EEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEE
T ss_pred             eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccE----EEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence            2222 3488887776665    3459999988742 111    1111111111 23333 344444443 2344555553


Q ss_pred             -cCceEEEecc-cccceEEEEEcCCCCEEE----EeeCCCcEEEeCCCCCC
Q 013274          385 -SGKTCLTFRG-HYEYVNCCCFSSQDQELY----TGGNDRQILVWCPSRHI  429 (446)
Q Consensus       385 -~~~~~~~l~g-H~~~v~~~~fSpd~~~lv----tgs~D~~v~vW~~~~~~  429 (446)
                       +++....+.. +.+.|..++++||++.|+    +....++|.+|++.++.
T Consensus       393 ~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          393 LDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             TTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             CCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence             5666666765 367889999999998666    33345789999987654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.31  E-value=4.8e-10  Score=105.77  Aligned_cols=200  Identities=10%  Similarity=0.085  Sum_probs=121.8

Q ss_pred             CCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCC---C--cEEEEeCCCCceeeeeeCCCCCeEEEEEe
Q 013274          125 DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTED---V--QVRLCDIASGAISQTLSGHRDGIMTVEWS  199 (446)
Q Consensus       125 D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d---~--~v~vwd~~~~~~~~~l~~h~~~v~sv~~s  199 (446)
                      +..|.+||+.+++... +   ..+....++|++   ..|+..+.+   +  .|.+||+++++.......+ . +.++.|+
T Consensus        42 ~~~l~~~d~~~~~~~~-l---~~~~~~~~SpDg---~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~ws  112 (347)
T 2gop_A           42 ENTIVIENLKNNARRF-I---ENATMPRISPDG---KKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWN  112 (347)
T ss_dssp             EEEEEEEETTTCCEEE-E---ESCEEEEECTTS---SEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEEC
T ss_pred             cceEEEEeCCCCceEE-c---ccCCCeEECCCC---CEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeEC
Confidence            6789999999876533 2   345667888754   345555432   2  4888899888755444433 3 9999999


Q ss_pred             cCCCeEEEEeeCC---------------------------CcEEEEEccCCceeEEeecccccccCCCcccccceeeccc
Q 013274          200 TSSEWILVTGGCD---------------------------GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKS  252 (446)
Q Consensus       200 ~~~~~~l~S~s~D---------------------------g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (446)
                      |+++.+ +.++.+                           ..|.+||+.++...+.                        
T Consensus       113 pdg~~l-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~------------------------  167 (347)
T 2gop_A          113 EDSRKL-LIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEE------------------------  167 (347)
T ss_dssp             TTSSEE-EEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEE------------------------
T ss_pred             CCCCEE-EEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEee------------------------
Confidence            999875 444422                           2233333332211000                        


Q ss_pred             cccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCC-
Q 013274          253 LSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS-  331 (446)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~-  331 (446)
                                                                          ... . .+..++|+||| ++++++.+. 
T Consensus       168 ----------------------------------------------------l~~-~-~~~~~~~spdg-~~~~~~~~~~  192 (347)
T 2gop_A          168 ----------------------------------------------------FEK-P-RFSSGIWHRDK-IVVNVPHREI  192 (347)
T ss_dssp             ----------------------------------------------------EEE-E-TTCEEEEETTE-EEEEEECCCS
T ss_pred             ----------------------------------------------------ecC-C-CcccccCCCCe-EEEEEecccc
Confidence                                                                011 1 46678899999 877776552 


Q ss_pred             ------cEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeC-C--------CceEEEEeecCceEEEecccc
Q 013274          332 ------RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC-M--------TAVKAFDIWSGKTCLTFRGHY  396 (446)
Q Consensus       332 ------~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~~~~~d~~~~~~~~~l~gH~  396 (446)
                            ..+||.+.+++..  .+..   .  .... ..+|++..++... .        ..+.+||  +++....+.+|.
T Consensus       193 ~~~~~~~~~l~~~d~~~~~--~l~~---~--~~~~-~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~  262 (347)
T 2gop_A          193 IPQYFKFWDIYIWEDGKEE--KMFE---K--VSFY-AVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVD  262 (347)
T ss_dssp             SCCSSCCEEEEEEETTEEE--EEEE---E--ESEE-EEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCC
T ss_pred             cccccccccEEEeCCCceE--Eecc---C--ccee-eECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCC
Confidence                  4456655443321  1111   1  1111 2277877655433 2        1345555  566555556778


Q ss_pred             cceEE-EEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274          397 EYVNC-CCFSSQDQELYTGGNDRQILVWCPS  426 (446)
Q Consensus       397 ~~v~~-~~fSpd~~~lvtgs~D~~v~vW~~~  426 (446)
                      ..+.. ++|+ |+ ++++++.|+.++|| .+
T Consensus       263 ~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~  290 (347)
T 2gop_A          263 RGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW  290 (347)
T ss_dssp             SEEEEEEEET-TE-EEEEEEETTEEEEE-EE
T ss_pred             cccCCccEEc-Cc-EEEEEecCCcEEEE-Ec
Confidence            88886 9999 98 99999999999999 86

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.29  E-value=5.9e-10  Score=105.71  Aligned_cols=276  Identities=13%  Similarity=0.126  Sum_probs=167.3

Q ss_pred             cCCCCEEEEeeC----CCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEe-----
Q 013274           53 LTEERYLLSGAS----DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS-----  123 (446)
Q Consensus        53 ~~~~~~l~s~s~----Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s-----  123 (446)
                      |+..++.++-..    +++|.+.|..+.+...         .+ .      .|.. .  .+.++| ++++++.+.     
T Consensus        42 pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~---------~I-~------vG~~-P--~va~sp-DG~~lyVan~~~~r  101 (386)
T 3sjl_D           42 PDARRVYVNDPAHFAAVTQQFVIDGEAGRVIG---------MI-D------GGFL-P--NPVVAD-DGSFIAHASTVFSR  101 (386)
T ss_dssp             CCTTEEEEEECGGGCSSEEEEEEETTTTEEEE---------EE-E------ECSS-C--EEEECT-TSSCEEEEEEEEEE
T ss_pred             CCCCEEEEEcCcccCCCCEEEEEECCCCeEEE---------EE-E------CCCC-C--cEEECC-CCCEEEEEcccccc
Confidence            433344444333    6899999987654210         00 0      1111 1  245565 777776654     


Q ss_pred             -----CCCeEEEEECCCCeeeEEEecCC--------ceEEeeeccCCCCceEEEEee--CCCcEEEEeCCCCceeeeeeC
Q 013274          124 -----YDHYVKVWDTNCTRVVMNFKMPG--------KVYRTAMSPLAASHMLIAAGT--EDVQVRLCDIASGAISQTLSG  188 (446)
Q Consensus       124 -----~D~~i~iWd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~lasgs--~d~~v~vwd~~~~~~~~~l~~  188 (446)
                           .++.|.+||..+.+.+..+....        ....+.+++++   .++..+.  .++.|.++|+.+++.+.++.-
T Consensus       102 ~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDG---k~lyVan~~~~~~VsVID~~t~~vv~tI~v  178 (386)
T 3sjl_D          102 IARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDG---KTLLFYQFSPAPAVGVVDLEGKAFKRMLDV  178 (386)
T ss_dssp             TTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTS---SEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred             cccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCC---CEEEEEEcCCCCeEEEEECCCCcEEEEEEC
Confidence                 46789999999999988876542        23456777754   2344443  368999999999999888854


Q ss_pred             CCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccC-CceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCcc
Q 013274          189 HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR-AGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQ  267 (446)
Q Consensus       189 h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (446)
                      ..  . ...+ |.+...+++.+.||++.+.++.. ++.....   ...+                               
T Consensus       179 ~g--~-~~~~-P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~---~~~~-------------------------------  220 (386)
T 3sjl_D          179 PD--C-YHIF-PTAPDTFFMHCRDGSLAKVAFGTEGTPEITH---TEVF-------------------------------  220 (386)
T ss_dssp             CS--E-EEEE-EEETTEEEEEETTSCEEEEECCSSSCCEEEE---CCCC-------------------------------
T ss_pred             CC--c-ceee-cCCCceeEEECCCCCEEEEECCCCCeEEEee---ccee-------------------------------
Confidence            22  1 2223 44433467888999999999865 3211000   0000                               


Q ss_pred             ccccCCCceeecccceeecCCccccccCCCcccccccccccccCe-EEEEE-ccCCCEEEEeecCCcEEEEecCcCceee
Q 013274          268 KRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAV-TGLKV-TEDGMYLLSAGSDSRIRLWDVESGRNTL  345 (446)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-~~l~f-s~dg~~l~sgs~D~~i~lWd~~~~~~~~  345 (446)
                                                 ...           ..++ ....| .++|+++. .+.+++|.+.|+.++....
T Consensus       221 ---------------------------~~~-----------~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v  261 (386)
T 3sjl_D          221 ---------------------------HPE-----------DEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKF  261 (386)
T ss_dssp             ---------------------------SCT-----------TSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEE
T ss_pred             ---------------------------ccc-----------cccccccceeEcCCCcEEE-EeCCCEEEEEECCCCccee
Confidence                                       000           0000 01134 37886555 4457899999997654322


Q ss_pred             ee-ee---E----EEeecCCCeEEEEcCCCcEEEEeCC-----------CceEEEEeecCceEEEecccccceEEEEEcC
Q 013274          346 VN-FE---T----VRLQTSKPIQLATTQDPAVVFVPCM-----------TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS  406 (446)
Q Consensus       346 ~~-~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSp  406 (446)
                      .. +.   .    ..........++++++...+++...           ..+-++|+.+++.+..+..-. .++.|+|||
T Consensus       262 ~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~-~~~~lavs~  340 (386)
T 3sjl_D          262 LPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH-EIDSINVSQ  340 (386)
T ss_dssp             CCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECS
T ss_pred             ecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC-CcceEEECC
Confidence            11 10   0    0111223345677888888887632           467888999999887765432 688999999


Q ss_pred             CCC-EEEE-eeCCCcEEEeCCCCCC
Q 013274          407 QDQ-ELYT-GGNDRQILVWCPSRHI  429 (446)
Q Consensus       407 d~~-~lvt-gs~D~~v~vW~~~~~~  429 (446)
                      |++ +|++ ...+++|-|+|..+.+
T Consensus       341 D~~~~ly~tn~~~~~VsViD~~t~k  365 (386)
T 3sjl_D          341 DEKPLLYALSTGDKTLYIHDAESGE  365 (386)
T ss_dssp             SSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             CCCeEEEEEcCCCCeEEEEECCCCc
Confidence            997 6665 5568999999998665

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.27  E-value=4e-09  Score=97.82  Aligned_cols=237  Identities=11%  Similarity=0.149  Sum_probs=145.7

Q ss_pred             eEEEEeecCCcEEEE-------EeCCCeEEEEECCCCeeeEEEe-----cCCceEEeeeccCCCCceEEEEeeCCCcEEE
Q 013274          107 SSAIWYPVDTGLFVT-------GSYDHYVKVWDTNCTRVVMNFK-----MPGKVYRTAMSPLAASHMLIAAGTEDVQVRL  174 (446)
Q Consensus       107 ~~~~~~~~~~~~l~s-------~s~D~~i~iWd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~lasgs~d~~v~v  174 (446)
                      .++++. .++.++++       +..++.|.+||..+++......     ....+..+.+.+..  ..++++.. ...|.+
T Consensus        21 ~~~~~~-~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~--g~l~v~~~-~~~l~~   96 (314)
T 1pjx_A           21 EGPVFD-KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDA--NQLFVADM-RLGLLV   96 (314)
T ss_dssp             EEEEEC-TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSS--SEEEEEET-TTEEEE
T ss_pred             cCceEC-CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCC--CcEEEEEC-CCCEEE
Confidence            355666 46777777       6778999999988776543221     11345566665531  34444443 447999


Q ss_pred             EeCCCCceeee-eeC----CCCCeEEEEEecCCCeEEEEeeCC---------------CcEEEEEccCCceeEEeecccc
Q 013274          175 CDIASGAISQT-LSG----HRDGIMTVEWSTSSEWILVTGGCD---------------GAIRFWDIRRAGCFRVLDQSQS  234 (446)
Q Consensus       175 wd~~~~~~~~~-l~~----h~~~v~sv~~s~~~~~~l~S~s~D---------------g~I~iWd~~~~~~~~~~~~~~~  234 (446)
                      ||.+ ++.... ...    +...+.+++++++++ ++++...+               +.|..||.. +... .      
T Consensus        97 ~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~------  166 (314)
T 1pjx_A           97 VQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI-Q------  166 (314)
T ss_dssp             EETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE-E------
T ss_pred             EeCC-CCEEEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCC-CCEE-E------
Confidence            9998 665433 221    123578999999886 45555444               233333322 1100 0      


Q ss_pred             cccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEE
Q 013274          235 QLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTG  314 (446)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  314 (446)
                                                                                            ...+......
T Consensus       167 ----------------------------------------------------------------------~~~~~~~~~~  176 (314)
T 1pjx_A          167 ----------------------------------------------------------------------VDTAFQFPNG  176 (314)
T ss_dssp             ----------------------------------------------------------------------EEEEESSEEE
T ss_pred             ----------------------------------------------------------------------eccCCCCcce
Confidence                                                                                  0011223567


Q ss_pred             EEEc----cCCCEE-EEeecCCcEEEEecC-cCceeee-eeeEEEeec-CCCeEEEEcCCCcEEEEe-CCCceEEEEeec
Q 013274          315 LKVT----EDGMYL-LSAGSDSRIRLWDVE-SGRNTLV-NFETVRLQT-SKPIQLATTQDPAVVFVP-CMTAVKAFDIWS  385 (446)
Q Consensus       315 l~fs----~dg~~l-~sgs~D~~i~lWd~~-~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~  385 (446)
                      ++++    |+|+.| ++...++.|.+||+. +++.... .+....... ..+..+++.+++.+.+.. ....+..|+..+
T Consensus       177 i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~  256 (314)
T 1pjx_A          177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDG  256 (314)
T ss_dssp             EEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTC
T ss_pred             EEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCC
Confidence            8899    999654 555678899999986 3321110 111111011 234557778888776654 456789999877


Q ss_pred             CceEEEecccccceEEEEEcCCCC-EEEEeeCCCcEEEeCCCC
Q 013274          386 GKTCLTFRGHYEYVNCCCFSSQDQ-ELYTGGNDRQILVWCPSR  427 (446)
Q Consensus       386 ~~~~~~l~gH~~~v~~~~fSpd~~-~lvtgs~D~~v~vW~~~~  427 (446)
                      ++....+..+...+.+++|+||++ ++++...++.|..|+++.
T Consensus       257 g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          257 GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            877777888878899999999999 555666678899998864

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.25  E-value=2.3e-08  Score=91.78  Aligned_cols=276  Identities=8%  Similarity=0.054  Sum_probs=174.3

Q ss_pred             CccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEE
Q 013274           42 HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT  121 (446)
Q Consensus        42 H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s  121 (446)
                      ......+|.+++ ++++.++...++.|.+||.+ +...          . +.     ...+...+.++.+.+ ++.++++
T Consensus        18 ~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~-~~~~----------~-~~-----~~~~~~~~~~i~~~~-~g~l~v~   78 (300)
T 2qc5_A           18 PDSGPYGITSSE-DGKVWFTQHKANKISSLDQS-GRIK----------E-FE-----VPTPDAKVMCLIVSS-LGDIWFT   78 (300)
T ss_dssp             TTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEE----------E-EE-----CSSTTCCEEEEEECT-TSCEEEE
T ss_pred             CCCCcceeeECC-CCCEEEEcCCCCeEEEECCC-CceE----------E-EE-----CCCCCCcceeEEECC-CCCEEEE
Confidence            345788999986 57778777788999999976 3210          0 00     011223455666654 6777777


Q ss_pred             EeCCCeEEEEECCCCeeeEEEecC---CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceee-eeeCCCCCeEEEE
Q 013274          122 GSYDHYVKVWDTNCTRVVMNFKMP---GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ-TLSGHRDGIMTVE  197 (446)
Q Consensus       122 ~s~D~~i~iWd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~-~l~~h~~~v~sv~  197 (446)
                      ...++.|..+|.. ++. ..+..+   .....+++.+   +..++++...++.|..+|.+ ++... .+......+.+++
T Consensus        79 ~~~~~~v~~~d~~-g~~-~~~~~~~~~~~~~~i~~~~---~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~  152 (300)
T 2qc5_A           79 ENGANKIGKLSKK-GGF-TEYPLPQPDSGPYGITEGL---NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFIT  152 (300)
T ss_dssp             ETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECS---TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEE
T ss_pred             ecCCCeEEEECCC-CCe-EEecCCCCCCCCccceECC---CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEE
Confidence            7668899999987 554 333332   3355566554   33466666667889999987 55432 2344456788999


Q ss_pred             EecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCcee
Q 013274          198 WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVR  277 (446)
Q Consensus       198 ~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (446)
                      +.++++ ++++...++.|..+|. ++.... +.                                               
T Consensus       153 ~d~~g~-l~v~~~~~~~i~~~~~-~g~~~~-~~-----------------------------------------------  182 (300)
T 2qc5_A          153 LGSDNA-LWFTENQNNSIGRITN-TGKLEE-YP-----------------------------------------------  182 (300)
T ss_dssp             ECTTSS-EEEEETTTTEEEEECT-TCCEEE-EE-----------------------------------------------
T ss_pred             ECCCCC-EEEEecCCCeEEEECC-CCcEEE-ee-----------------------------------------------
Confidence            999887 5666666788998886 332110 10                                               


Q ss_pred             ecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCC
Q 013274          278 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK  357 (446)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~  357 (446)
                                                 ...+...+..++++++|...++....+.|..||. +++.....   .......
T Consensus       183 ---------------------------~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~---~~~~~~~  231 (300)
T 2qc5_A          183 ---------------------------LPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYD---IPTPNAR  231 (300)
T ss_dssp             ---------------------------CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEE---CSSTTCC
T ss_pred             ---------------------------CCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEE---CCCCCCC
Confidence                                       0001123678899999988887777788999998 43321111   1111234


Q ss_pred             CeEEEEcCCCcEEEEeC-CCceEEEEeecCceEE-EecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274          358 PIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCL-TFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS  426 (446)
Q Consensus       358 ~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~-~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~  426 (446)
                      +..++..+++.+.+... ...+..++. +++... .+..+...+.++++.++|++.++.. . .|..++|+
T Consensus       232 ~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          232 PHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             EEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred             ceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence            55677888877555543 357888887 454332 2444566789999999999877766 4 66666654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.22  E-value=2.8e-08  Score=91.12  Aligned_cols=234  Identities=12%  Similarity=0.064  Sum_probs=153.0

Q ss_pred             ccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEec---CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC
Q 013274          104 YAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM---PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG  180 (446)
Q Consensus       104 ~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~  180 (446)
                      ..+.++.+.+ ++.++++...++.|.+||.. +... .+..   ...+..+++.+.   ..+.++...++.|..||.+ +
T Consensus        15 ~~~~~i~~d~-~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~~~---g~l~v~~~~~~~i~~~~~~-g   87 (299)
T 2z2n_A           15 TGPYGITVSD-KGKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLTISSD---GEVWFTENAANKIGRITKK-G   87 (299)
T ss_dssp             CCEEEEEECT-TSCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEEECTT---SCEEEEETTTTEEEEECTT-S
T ss_pred             CCccceEECC-CCCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEEECCC---CCEEEeCCCCCeEEEECCC-C
Confidence            3456666654 67777776668999999988 5433 3332   234556666543   3456666667889999986 3


Q ss_pred             ce-eeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCC
Q 013274          181 AI-SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNS  259 (446)
Q Consensus       181 ~~-~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (446)
                      .. ...+..+...+.++++.+++. ++++...++.|..||. ++... .+.                             
T Consensus        88 ~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~g~~~-~~~-----------------------------  135 (299)
T 2z2n_A           88 IIKEYTLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRITD-DGKIR-EYE-----------------------------  135 (299)
T ss_dssp             CEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEE-EEE-----------------------------
T ss_pred             cEEEEeCCCcCCCceeeEECCCCC-EEEEecCCceEEEECC-CCCEE-Eec-----------------------------
Confidence            32 222333556789999998876 5667667788999987 33211 000                             


Q ss_pred             CcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecC
Q 013274          260 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVE  339 (446)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~  339 (446)
                                                                   ...+...+..++++++|..+++...++.|..||. 
T Consensus       136 ---------------------------------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-  169 (299)
T 2z2n_A          136 ---------------------------------------------LPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-  169 (299)
T ss_dssp             ---------------------------------------------CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-
T ss_pred             ---------------------------------------------CCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-
Confidence                                                         0001124788999999988887777889999998 


Q ss_pred             cCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeC-CCceEEEEeecCceEE-EecccccceEEEEEcCCCCEEEEeeCC
Q 013274          340 SGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCL-TFRGHYEYVNCCCFSSQDQELYTGGND  417 (446)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~-~l~gH~~~v~~~~fSpd~~~lvtgs~D  417 (446)
                      +++...  + ........+..+++.+++.+.+... ...+..|+. +++... .+..+...+.+++++++|++.++...+
T Consensus       170 ~g~~~~--~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~  245 (299)
T 2z2n_A          170 SGDITE--F-KIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGA  245 (299)
T ss_dssp             TCCEEE--E-ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTT
T ss_pred             CCcEEE--e-eCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCC
Confidence            554221  1 0111122345677778877655543 457888888 666433 244566789999999999988887778


Q ss_pred             CcEEEeCCC
Q 013274          418 RQILVWCPS  426 (446)
Q Consensus       418 ~~v~vW~~~  426 (446)
                      +.|.+|+++
T Consensus       246 ~~i~~~d~~  254 (299)
T 2z2n_A          246 NKIGRLTSN  254 (299)
T ss_dssp             TEEEEEETT
T ss_pred             ceEEEECCC
Confidence            899999985

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.22  E-value=5.2e-10  Score=106.46  Aligned_cols=106  Identities=13%  Similarity=0.081  Sum_probs=78.7

Q ss_pred             EeEEEEeecCCcEEEEEeCCCeEEEEECCCCe-----------eeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEE
Q 013274          106 ISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR-----------VVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRL  174 (446)
Q Consensus       106 V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~v  174 (446)
                      +..+++++ ...++++|+.| .+++|++++..           ......+++ ++.++|     +..+|+++ .++.|++
T Consensus        40 ~nlLais~-~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f-----d~~~L~v~-~~~~l~v  110 (388)
T 1xip_A           40 LQNLDISN-SKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF-----HGDQVLVS-TRNALYS  110 (388)
T ss_dssp             CBCEEEET-TTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE-----ETTEEEEE-ESSEEEE
T ss_pred             ccEEEEcC-CCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE-----CCCEEEEE-cCCcEEE
Confidence            55566665 56689999988 56779865322           224456677 888888     23466676 7899999


Q ss_pred             EeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCC
Q 013274          175 CDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRA  223 (446)
Q Consensus       175 wd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~  223 (446)
                      ||+.+......+..|...+.++.+.+.  . ++.++.||.+.+||+..+
T Consensus       111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~  156 (388)
T 1xip_A          111 LDLEELSEFRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTK  156 (388)
T ss_dssp             EESSSTTCEEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTC
T ss_pred             EEchhhhccCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccCC
Confidence            999887766677788888998887754  3 678899999999999754

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.21  E-value=2.9e-08  Score=91.65  Aligned_cols=224  Identities=13%  Similarity=0.142  Sum_probs=140.2

Q ss_pred             EEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeee
Q 013274          108 SAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS  187 (446)
Q Consensus       108 ~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~  187 (446)
                      +..|.+.++.++++...++.|..||..++.. ..+...+.+..+++.+..   .++++.  +..|.+||.++++......
T Consensus        17 gp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG---~l~v~~--~~~l~~~d~~~g~~~~~~~   90 (297)
T 3g4e_A           17 SPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQSG---GYVATI--GTKFCALNWKEQSAVVLAT   90 (297)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBTTS---SEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECCCC---CEEEEE--CCeEEEEECCCCcEEEEEe
Confidence            3466665667778888889999999987765 445566677777777643   344443  5689999998886533222


Q ss_pred             C----CCCCeEEEEEecCCCeEEEEeeCC---------CcEEEEEccCCceeEEeecccccccCCCcccccceeeccccc
Q 013274          188 G----HRDGIMTVEWSTSSEWILVTGGCD---------GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLS  254 (446)
Q Consensus       188 ~----h~~~v~sv~~s~~~~~~l~S~s~D---------g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (446)
                      .    ....+..+.++|+++. +++...+         ....+|.+.....+..                          
T Consensus        91 ~~~~~~~~~~~di~~d~dG~l-~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~--------------------------  143 (297)
T 3g4e_A           91 VDNDKKNNRFNDGKVDPAGRY-FAGTMAEETAPAVLERHQGALYSLFPDHHVKK--------------------------  143 (297)
T ss_dssp             CCTTCSSEEEEEEEECTTSCE-EEEEEECCSBTTBCCTTCEEEEEECTTSCEEE--------------------------
T ss_pred             cCCCCCCCCCCCEEECCCCCE-EEecCCcccccccccCCCcEEEEEECCCCEEE--------------------------
Confidence            1    1234678999998874 4443221         2234443321110000                          


Q ss_pred             cCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEE-EEeecCCcE
Q 013274          255 AGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL-LSAGSDSRI  333 (446)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l-~sgs~D~~i  333 (446)
                                                                        ...+....+.++|+|||+.| ++.+.+++|
T Consensus       144 --------------------------------------------------~~~~~~~pngi~~spdg~~lyv~~~~~~~i  173 (297)
T 3g4e_A          144 --------------------------------------------------YFDQVDISNGLDWSLDHKIFYYIDSLSYSV  173 (297)
T ss_dssp             --------------------------------------------------EEEEESBEEEEEECTTSCEEEEEEGGGTEE
T ss_pred             --------------------------------------------------EeeccccccceEEcCCCCEEEEecCCCCcE
Confidence                                                              00112235789999999865 666778899


Q ss_pred             EEEec--CcCceee-eeeeEEEeecCCCeEEEEcCCCcEEEEe-CCCceEEEEeecCceEEEecccccceEEEEEc-CCC
Q 013274          334 RLWDV--ESGRNTL-VNFETVRLQTSKPIQLATTQDPAVVFVP-CMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFS-SQD  408 (446)
Q Consensus       334 ~lWd~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fS-pd~  408 (446)
                      ..||+  .++.... ..+.........+..++..+++.+.+.. ....+..||..+++.+..+..+...+++++|+ ||+
T Consensus       174 ~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~  253 (297)
T 3g4e_A          174 DAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNY  253 (297)
T ss_dssp             EEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGG
T ss_pred             EEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCC
Confidence            99987  3443211 0111111111234557778888665554 34568889988899999998888889999999 898


Q ss_pred             CEEEEe
Q 013274          409 QELYTG  414 (446)
Q Consensus       409 ~~lvtg  414 (446)
                      +.|+-+
T Consensus       254 ~~L~vt  259 (297)
T 3g4e_A          254 SEMYVT  259 (297)
T ss_dssp             CEEEEE
T ss_pred             CEEEEE
Confidence            776533

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.20  E-value=3.7e-09  Score=101.96  Aligned_cols=274  Identities=12%  Similarity=0.077  Sum_probs=169.3

Q ss_pred             EEEEeeCC----CcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEe----------
Q 013274           58 YLLSGASD----SSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS----------  123 (446)
Q Consensus        58 ~l~s~s~D----g~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s----------  123 (446)
                      ..++...+    ++|.+.|+.+.+...          .+.+      |.. .  .+.++| |+++++.+.          
T Consensus        87 vyV~n~~~~~~~~~VsVID~~t~~vv~----------~I~v------G~~-P--gia~Sp-Dgk~lyVan~~~~~~~~G~  146 (426)
T 3c75_H           87 VYIQDPAHFAAITQQFVIDGSTGRILG----------MTDG------GFL-P--HPVAAE-DGSFFAQASTVFERIARGK  146 (426)
T ss_dssp             EEEEECTTTCSSEEEEEEETTTTEEEE----------EEEE------CSS-C--EEEECT-TSSCEEEEEEEEEETTEEE
T ss_pred             EEEECCCcCCCCCeEEEEECCCCEEEE----------EEEC------CCC-C--ceEECC-CCCEEEEEeccccccccCC
Confidence            44444444    799999998764210          0111      111 1  345665 777666664          


Q ss_pred             CCCeEEEEECCCCeeeEEEecC--------CceEEeeeccCCCCceEEEEee--CCCcEEEEeCCCCceeeeeeCCCCCe
Q 013274          124 YDHYVKVWDTNCTRVVMNFKMP--------GKVYRTAMSPLAASHMLIAAGT--EDVQVRLCDIASGAISQTLSGHRDGI  193 (446)
Q Consensus       124 ~D~~i~iWd~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~lasgs--~d~~v~vwd~~~~~~~~~l~~h~~~v  193 (446)
                      .++.|.++|..+.+.+..+...        ...+.+.++++.   .++..+.  .++.|.+.|+.+++.+.++.-..  .
T Consensus       147 ~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDG---k~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~  221 (426)
T 3c75_H          147 RTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDN---KNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C  221 (426)
T ss_dssp             EEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTS---SEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E
T ss_pred             CCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCC---CEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c
Confidence            4679999999999998887764        123345666643   3444443  26789999999999888776321  1


Q ss_pred             EEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCC
Q 013274          194 MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANG  273 (446)
Q Consensus       194 ~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (446)
                        ....|+++..+++.+.||++.+.++.+++......   ..                                      
T Consensus       222 --~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~---~~--------------------------------------  258 (426)
T 3c75_H          222 --YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT---EV--------------------------------------  258 (426)
T ss_dssp             --EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC---CC--------------------------------------
T ss_pred             --eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee---ee--------------------------------------
Confidence              33445554556788889998888874433211100   00                                      


Q ss_pred             CceeecccceeecCCccccccCCCcccccccccccccC-eEEEEEccCCCEEEEeecCCcEEEEecCcCceeeee-eeE-
Q 013274          274 NGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGA-VTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVN-FET-  350 (446)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~-~~~-  350 (446)
                                          +...           ..+ ...+.|++++..++-.+..++|.+.|+.+....... +.. 
T Consensus       259 --------------------~~v~-----------~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~  307 (426)
T 3c75_H          259 --------------------FHTE-----------DELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEAL  307 (426)
T ss_dssp             --------------------CSCT-----------TSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESS
T ss_pred             --------------------eccC-----------CCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeec
Confidence                                0000           000 011357788876655567788999998764322111 000 


Q ss_pred             ------EEeecCCCeEEEEcCCCcEEEEeC-----------CCceEEEEeecCceEEEecccccceEEEEEcCCCC-EEE
Q 013274          351 ------VRLQTSKPIQLATTQDPAVVFVPC-----------MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQ-ELY  412 (446)
Q Consensus       351 ------~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~-~lv  412 (446)
                            ..........+++++++..+++..           .+.+.++|..+++.+.++..-. ..+.++|+||++ +|+
T Consensus       308 ~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~ly  386 (426)
T 3c75_H          308 TEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQDAEPLLY  386 (426)
T ss_dssp             CTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEE
T ss_pred             cccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEEEE
Confidence                  000111222357888887777753           2468999999999988886443 479999999999 888


Q ss_pred             Eee-CCCcEEEeCCCCCCCC
Q 013274          413 TGG-NDRQILVWCPSRHISD  431 (446)
Q Consensus       413 tgs-~D~~v~vW~~~~~~~~  431 (446)
                      +.. .+++|.|+|+.+.+..
T Consensus       387 v~n~~s~~VsVID~~t~kvv  406 (426)
T 3c75_H          387 ALSAGTQTLHIYDAATGEEL  406 (426)
T ss_dssp             EEETTTTEEEEEETTTCCEE
T ss_pred             EEcCCCCeEEEEECCCCCEE
Confidence            777 5999999999877644

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.19  E-value=3.7e-09  Score=99.86  Aligned_cols=273  Identities=11%  Similarity=0.086  Sum_probs=161.6

Q ss_pred             cceeEEEeecCCCCEEEEee--CCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEE
Q 013274           44 GSINSLQVDLTEERYLLSGA--SDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT  121 (446)
Q Consensus        44 ~~v~~l~~s~~~~~~l~s~s--~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s  121 (446)
                      .....|++++ +++++++..  .++.++||.+.++...       ....   . .....+|-..+..+.+.+ ++.++++
T Consensus        17 ~~p~~va~~~-~g~~~v~~~~~~~~~~~l~~~~~g~~~-------~~p~---~-~~~~~~~~~~p~gv~~d~-~g~L~v~   83 (343)
T 2qe8_A           17 LAPGNITLTP-DGRLFLSLHQFYQPEMQVAELTQDGLI-------PFPP---Q-SGNAIITFDTVLGIKSDG-NGIVWML   83 (343)
T ss_dssp             SCEEEEEECT-TSCEEEEECGGGCCSCSEEEEETTEEE-------ESCC---C-CSSCCCCCSCEEEEEECS-SSEEEEE
T ss_pred             CCcceEEECC-CCCEEEEeCCCCCCceEEEEECCCCee-------cCCC---c-ccCcccceeEeeEEEEcC-CCcEEEE
Confidence            5688999986 678888864  2444777876532210       0000   0 011124556777877765 5655554


Q ss_pred             EeC-----CCeEEEEECCCCeeeEEEecCC-------ceEEeeeccCCCCceEEEEee---CCCcEEEEeCCCCceeeee
Q 013274          122 GSY-----DHYVKVWDTNCTRVVMNFKMPG-------KVYRTAMSPLAASHMLIAAGT---EDVQVRLCDIASGAISQTL  186 (446)
Q Consensus       122 ~s~-----D~~i~iWd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~lasgs---~d~~v~vwd~~~~~~~~~l  186 (446)
                      -..     +..|.+||+.+++.+..+..+.       ....+++.+.  +..++++.+   .++.|.+||+.+++..+.+
T Consensus        84 D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~--~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~  161 (343)
T 2qe8_A           84 DNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLI--HNFVYISDPAPDDKAALIRVDLQTGLAARVL  161 (343)
T ss_dssp             ECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETT--TTEEEEEECCSGGGCEEEEEETTTCCEEEEC
T ss_pred             cCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecC--CCEEEEEcCccCCCCeEEEEECCCCCEEEEe
Confidence            333     5799999999999877776532       2345566542  234555555   6789999999988877767


Q ss_pred             eCCCCCeE-EEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCC
Q 013274          187 SGHRDGIM-TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRA  265 (446)
Q Consensus       187 ~~h~~~v~-sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (446)
                      .+|..... ...+.+++. .+.+.+.|++++.|..                                             
T Consensus       162 ~~~~~~~~~~~~~~~~g~-~~~~~~~~g~~~~~~~---------------------------------------------  195 (343)
T 2qe8_A          162 QGYPGIAPEDIDLVIDGV-PVQIGQPDGTVIRPHL---------------------------------------------  195 (343)
T ss_dssp             TTCTTTSCCSCCCEETTE-ECBEECTTSCEECCCC---------------------------------------------
T ss_pred             cCCCcccccccceeECCE-EEEeccCCCceeceec---------------------------------------------
Confidence            66533211 123333443 2344555555543320                                             


Q ss_pred             ccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcC--ce
Q 013274          266 PQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG--RN  343 (446)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~--~~  343 (446)
                                                                   .+..|+|+|||++|..+..++. ++|.+...  +.
T Consensus       196 ---------------------------------------------~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~  229 (343)
T 2qe8_A          196 ---------------------------------------------GVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSN  229 (343)
T ss_dssp             ---------------------------------------------CEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTC
T ss_pred             ---------------------------------------------ccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcC
Confidence                                                         1567899999998887776664 55554321  00


Q ss_pred             ------e-eeeeeEEEeecCCCeEEEEcCCCcEEEEeC-CCceEEEEeecCceEEEecc-cccceEEEEEcCCCCEEEEe
Q 013274          344 ------T-LVNFETVRLQTSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRG-HYEYVNCCCFSSQDQELYTG  414 (446)
Q Consensus       344 ------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~l~g-H~~~v~~~~fSpd~~~lvtg  414 (446)
                            . ...+... .....+.-+++.+++.+.++.. ...+..|+..+++....... +...+++|+|.++++++++.
T Consensus       230 ~~~~~~~~~~~~~~~-g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~  308 (343)
T 2qe8_A          230 LQLTDAELGSKIERY-SEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDC  308 (343)
T ss_dssp             TTCCHHHHHTTCEEE-EECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEE
T ss_pred             CCCChhhhhcceEec-ccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEe
Confidence                  0 0001111 1122445578888877666543 35788999755654333322 35678999999999999888


Q ss_pred             eCCCcEEEeC
Q 013274          415 GNDRQILVWC  424 (446)
Q Consensus       415 s~D~~v~vW~  424 (446)
                      +..+.+.+|.
T Consensus       309 ~~~~~~~~f~  318 (343)
T 2qe8_A          309 NQLHHSAPLN  318 (343)
T ss_dssp             CCGGGSGGGB
T ss_pred             Cccccccccc
Confidence            7665554454

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.19  E-value=9.6e-09  Score=99.46  Aligned_cols=243  Identities=12%  Similarity=0.093  Sum_probs=155.2

Q ss_pred             cEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCC--cEEEEeCCCCce
Q 013274          105 AISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV--QVRLCDIASGAI  182 (446)
Q Consensus       105 ~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~--~v~vwd~~~~~~  182 (446)
                      ....+++.+ ++.++++...++.|++||++++.+........... +++.+..   ..++++..++  .|.++|...+..
T Consensus       132 ~P~~la~d~-~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g---~~l~~~d~~~~~~I~~~d~~~~~~  206 (409)
T 3hrp_A          132 YMWGIAAVG-NNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDK---QRVYSIGWEGTHTVYVYMKASGWA  206 (409)
T ss_dssp             CEEEEEECS-TTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTS---SEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred             CceEEEEeC-CCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCC---CcEEEEecCCCceEEEEEcCCCce
Confidence            455666664 77777887788999999999887765544333333 6666543   3455555544  799999877654


Q ss_pred             eeee----eCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCC
Q 013274          183 SQTL----SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQN  258 (446)
Q Consensus       183 ~~~l----~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (446)
                      ...+    ..+...+.+++++|++..+++ +..++.|+.||..++.. ..+....                         
T Consensus       207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~-~~~~~~~-------------------------  259 (409)
T 3hrp_A          207 PTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEV-TLIKQLE-------------------------  259 (409)
T ss_dssp             EEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCE-EEEEECC-------------------------
T ss_pred             eEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCE-EEEeccc-------------------------
Confidence            4444    224566788999995555555 66688999999875431 1110000                         


Q ss_pred             CCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccc--cCeEEEEEcc-CCCEEEEeecCCcEEE
Q 013274          259 SSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHY--GAVTGLKVTE-DGMYLLSAGSDSRIRL  335 (446)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~fs~-dg~~l~sgs~D~~i~l  335 (446)
                                                 .                   .++.  .|...|+|+| ++.++++...+++|+.
T Consensus       260 ---------------------------~-------------------~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~  293 (409)
T 3hrp_A          260 ---------------------------L-------------------SGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYK  293 (409)
T ss_dssp             ---------------------------C-------------------CSCCCCSSCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred             ---------------------------c-------------------cCCCCCCccccEEEeCCCCEEEEEeCCCCEEEE
Confidence                                       0                   0000  1123789999 5777788888899999


Q ss_pred             EecCcCceeeeeee------EE---EeecCCCeEEEEcCCCcEEEEeC-C-CceEEEEeecCceEEEeccc---------
Q 013274          336 WDVESGRNTLVNFE------TV---RLQTSKPIQLATTQDPAVVFVPC-M-TAVKAFDIWSGKTCLTFRGH---------  395 (446)
Q Consensus       336 Wd~~~~~~~~~~~~------~~---~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~d~~~~~~~~~l~gH---------  395 (446)
                      |+............      ..   ......+..+++.+++.++++.. . ..++.|++.+++ +.++.++         
T Consensus       294 ~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~-v~~~~g~~~~~g~~~g  372 (409)
T 3hrp_A          294 ITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY-VSTVAGQVDVASQIDG  372 (409)
T ss_dssp             ECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE-EEEEEECTTCBSCCCB
T ss_pred             EecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE-EEEEeCCCCCCCcCCC
Confidence            98764311111000      00   00023466788999988666654 3 578888876665 4556555         


Q ss_pred             ------ccceEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274          396 ------YEYVNCCCFSSQDQELYTGGNDRQILVWCPS  426 (446)
Q Consensus       396 ------~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~  426 (446)
                            ......++++|++.++++-..++.|+.+.++
T Consensus       373 ~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          373 TPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             STTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred             ChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence                  3568999999999999999999999887653

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.14  E-value=1.5e-08  Score=91.82  Aligned_cols=238  Identities=13%  Similarity=0.047  Sum_probs=145.3

Q ss_pred             ceeEEEeecCCCCEEE-EeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEe
Q 013274           45 SINSLQVDLTEERYLL-SGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS  123 (446)
Q Consensus        45 ~v~~l~~s~~~~~~l~-s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s  123 (446)
                      ...+|++++ ++++.+ +.+.++.|.+||..+....             ..    ...+...+.++.+.+ ++.++++..
T Consensus        25 ~p~~i~~~~-~g~l~v~~~~~~~~i~~~~~~~~~~~-------------~~----~~~~~~~p~~i~~~~-~g~l~v~~~   85 (270)
T 1rwi_B           25 SPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTT-------------VL----PFNGLYQPQGLAVDG-AGTVYVTDF   85 (270)
T ss_dssp             CEEEEEECT-TCCEEEEECSSSCEEEEECC-----E-------------EC----CCCSCCSCCCEEECT-TCCEEEEET
T ss_pred             CccceEECC-CCCEEEEccCCCCcEEEecCCCcccc-------------eE----eeCCcCCcceeEECC-CCCEEEEcC
Confidence            567899986 567777 5578899999987543210             00    011222344556655 666666655


Q ss_pred             CCCeEEEEECCCCeeeEEEecC--CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecC
Q 013274          124 YDHYVKVWDTNCTRVVMNFKMP--GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTS  201 (446)
Q Consensus       124 ~D~~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~  201 (446)
                       ++.|.+||....... .+...  .....+++.+.   ..++++...++.|.+||..+.........+...+..++++++
T Consensus        86 -~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~---g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~  160 (270)
T 1rwi_B           86 -NNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQ---GAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNS  160 (270)
T ss_dssp             -TTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTT---CCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTT
T ss_pred             -CCEEEEEeCCCceEe-eeecCCcCCCcceEECCC---CCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCC
Confidence             889999998765432 22222  34566666653   346666666788999986655433333333446788999998


Q ss_pred             CCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeeccc
Q 013274          202 SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV  281 (446)
Q Consensus       202 ~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (446)
                      ++ ++++...++.|.+||.........                                                     
T Consensus       161 g~-l~v~~~~~~~i~~~~~~~~~~~~~-----------------------------------------------------  186 (270)
T 1rwi_B          161 GN-VYVTDTDNNRVVKLEAESNNQVVL-----------------------------------------------------  186 (270)
T ss_dssp             CC-EEEEEGGGTEEEEECTTTCCEEEC-----------------------------------------------------
T ss_pred             CC-EEEEECCCCEEEEEecCCCceEee-----------------------------------------------------
Confidence            87 567777778999998754321000                                                     


Q ss_pred             ceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEE
Q 013274          282 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQL  361 (446)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~  361 (446)
                                             ...+...+.+|+++++|..+++...++.|.+||........  ..  ......+..+
T Consensus       187 -----------------------~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~--~~--~~~~~~p~~i  239 (270)
T 1rwi_B          187 -----------------------PFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV--LP--FTGLNTPLAV  239 (270)
T ss_dssp             -----------------------CCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE--CC--CCSCSCEEEE
T ss_pred             -----------------------cccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee--ec--cCCCCCceeE
Confidence                                   00011346789999999888888888999999987643211  10  0011345667


Q ss_pred             EEcCCCcEEEEeC-CCceEEEEeecCc
Q 013274          362 ATTQDPAVVFVPC-MTAVKAFDIWSGK  387 (446)
Q Consensus       362 ~~~~~~~~~~~~~-~~~~~~~d~~~~~  387 (446)
                      ++.+++.++++.. ...++++++...+
T Consensus       240 ~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          240 AVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             EECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             EECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            8888887555543 3567777765443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.12  E-value=2.9e-07  Score=86.09  Aligned_cols=150  Identities=9%  Similarity=-0.009  Sum_probs=93.8

Q ss_pred             cceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEe
Q 013274           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS  123 (446)
Q Consensus        44 ~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s  123 (446)
                      ....+..|+++++.++++...++.|..||.+++...           .+        .+...+.++.+.+ ++.++++. 
T Consensus        49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-----------~~--------~~~~~v~~i~~~~-dg~l~v~~-  107 (326)
T 2ghs_A           49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRKT-----------VH--------ALPFMGSALAKIS-DSKQLIAS-  107 (326)
T ss_dssp             SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-----------EE--------ECSSCEEEEEEEE-TTEEEEEE-
T ss_pred             CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-----------EE--------ECCCcceEEEEeC-CCeEEEEE-
Confidence            345678899866778888888899999998754310           00        1123566777776 67666654 


Q ss_pred             CCCeEEEEECCCCeeeEEEecC-----CceEEeeeccCCCCceEEEEeeC------CCcEEEEeCCCCceeeeeeCCCCC
Q 013274          124 YDHYVKVWDTNCTRVVMNFKMP-----GKVYRTAMSPLAASHMLIAAGTE------DVQVRLCDIASGAISQTLSGHRDG  192 (446)
Q Consensus       124 ~D~~i~iWd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~lasgs~------d~~v~vwd~~~~~~~~~l~~h~~~  192 (446)
                      .+ .|.+||..+++........     ..++.+.+.+..   .++++...      .+.|..+|  +++.. .+..+...
T Consensus       108 ~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G---~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~  180 (326)
T 2ghs_A          108 DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSG---ALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISI  180 (326)
T ss_dssp             TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTS---CEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESS
T ss_pred             CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCC---CEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcc
Confidence            44 5999999887754322221     134556666543   34443321      24555666  45432 33333445


Q ss_pred             eEEEEEecCCCeEEEEeeCCCcEEEEEcc
Q 013274          193 IMTVEWSTSSEWILVTGGCDGAIRFWDIR  221 (446)
Q Consensus       193 v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~  221 (446)
                      ...++|+|+++.++++.+.++.|.+||+.
T Consensus       181 ~~~i~~s~dg~~lyv~~~~~~~I~~~d~~  209 (326)
T 2ghs_A          181 PNSICFSPDGTTGYFVDTKVNRLMRVPLD  209 (326)
T ss_dssp             EEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred             cCCeEEcCCCCEEEEEECCCCEEEEEEcc
Confidence            67899999998766676777899999975

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.11  E-value=1.4e-08  Score=105.24  Aligned_cols=158  Identities=15%  Similarity=0.175  Sum_probs=98.1

Q ss_pred             CCccceeEEEeecCCCCEEE-----EeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecC
Q 013274           41 PHKGSINSLQVDLTEERYLL-----SGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (446)
Q Consensus        41 ~H~~~v~~l~~s~~~~~~l~-----s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~  115 (446)
                      +|...+..++||| ++++||     +|+.+.+|++||+++++....                +..+.+  ...+.|+  |
T Consensus       126 ~~~~~l~~~~~Sp-Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~----------------~~~~~k--~~~~~Ws--D  184 (693)
T 3iuj_A          126 DGTTALDQLSFSR-DGRILAYSLSLAGSDWREIHLMDVESKQPLET----------------PLKDVK--FSGISWL--G  184 (693)
T ss_dssp             TSCCEEEEEEECT-TSSEEEEEEECSSCCEEEEEEEETTTCSEEEE----------------EEEEEE--SCCCEEE--T
T ss_pred             CCcEEEEEEEECC-CCCEEEEEEecCCCceEEEEEEECCCCCCCcc----------------ccCCce--eccEEEe--C
Confidence            4666788999997 677777     344446799999988653110                000110  1234566  7


Q ss_pred             CcEEEEEeCCC-------------eEEEEECCCCee--eEEEecCC----ceEEeeeccCCCCceEEEEee---CCCcEE
Q 013274          116 TGLFVTGSYDH-------------YVKVWDTNCTRV--VMNFKMPG----KVYRTAMSPLAASHMLIAAGT---EDVQVR  173 (446)
Q Consensus       116 ~~~l~s~s~D~-------------~i~iWd~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~lasgs---~d~~v~  173 (446)
                      ++.|+.++.|.             .|.+|++.+++.  ...+....    ....+.++++..  .++++.+   .+..|+
T Consensus       185 g~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~--~l~~~~~~~~~~~~i~  262 (693)
T 3iuj_A          185 NEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDR--FLLISAANSTSGNRLY  262 (693)
T ss_dssp             TTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSC--EEEEEEESSSSCCEEE
T ss_pred             CCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCC--EEEEEEccCCCCcEEE
Confidence            77888887774             499999987643  22233322    245666777542  3444433   235899


Q ss_pred             EEeCCCCc-eeeeeeCCCCCeEEEEEecCCCeEEEEeeCC---CcEEEEEccC
Q 013274          174 LCDIASGA-ISQTLSGHRDGIMTVEWSTSSEWILVTGGCD---GAIRFWDIRR  222 (446)
Q Consensus       174 vwd~~~~~-~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~D---g~I~iWd~~~  222 (446)
                      ++|++++. ....+..+.+..... ++++++.+++.+..|   +.|..+|+.+
T Consensus       263 ~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~  314 (693)
T 3iuj_A          263 VKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAAN  314 (693)
T ss_dssp             EEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTS
T ss_pred             EEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCC
Confidence            99998874 456677777766665 566667666666554   5677777764

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.10  E-value=4e-09  Score=100.38  Aligned_cols=154  Identities=9%  Similarity=0.063  Sum_probs=103.0

Q ss_pred             ceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeC
Q 013274           45 SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY  124 (446)
Q Consensus        45 ~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~  124 (446)
                      .++.|++++. ..++++|+.|+ +++|+++........... ...+..      ...+.. |+.+.|   ++.+|+++ .
T Consensus        39 ~~nlLais~~-~gll~a~~~~~-l~v~~~~~l~~~~~~~~~-~~~~~~------~~~lp~-V~~l~f---d~~~L~v~-~  104 (388)
T 1xip_A           39 SLQNLDISNS-KSLFVAASGSK-AVVGELQLLRDHITSDST-PLTFKW------EKEIPD-VIFVCF---HGDQVLVS-T  104 (388)
T ss_dssp             CCBCEEEETT-TTEEEEEETTE-EEEEEHHHHHHHHHSSSC-CCCCSE------EEECTT-EEEEEE---ETTEEEEE-E
T ss_pred             cccEEEEcCC-CCEEEEeCCCE-EEEEEhhHhhhhhccccc-cccceE------EeeCCC-eeEEEE---CCCEEEEE-c
Confidence            6899999974 56788888885 666998654310000000 001111      123555 888888   67788888 8


Q ss_pred             CCeEEEEECCCCeeeEEE-ecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCC
Q 013274          125 DHYVKVWDTNCTRVVMNF-KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSE  203 (446)
Q Consensus       125 D~~i~iWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~  203 (446)
                      ++.|++||+.+....... .+...+..+.+.  .+   -+++++.||.|.+||+.++....    +...|++++|+|+| 
T Consensus       105 ~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~--~p---~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG-  174 (388)
T 1xip_A          105 RNALYSLDLEELSEFRTVTSFEKPVFQLKNV--NN---TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ-  174 (388)
T ss_dssp             SSEEEEEESSSTTCEEEEEECSSCEEEEEEC--SS---EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE-
T ss_pred             CCcEEEEEchhhhccCccceeecceeeEEec--CC---CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc-
Confidence            899999998765433222 223334443332  22   27888999999999999876543    45689999999987 


Q ss_pred             eEEEEeeCCCcEEEEEccCCc
Q 013274          204 WILVTGGCDGAIRFWDIRRAG  224 (446)
Q Consensus       204 ~~l~S~s~Dg~I~iWd~~~~~  224 (446)
                        ++.|..||+|++|+.....
T Consensus       175 --~~vg~~dg~i~~~~~~~~~  193 (388)
T 1xip_A          175 --LAVLLKDRSFQSFAWRNGE  193 (388)
T ss_dssp             --EEEEETTSCEEEEEEETTE
T ss_pred             --eEEEEcCCcEEEEcCCCcc
Confidence              3678899999999887654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.08  E-value=2e-07  Score=86.13  Aligned_cols=245  Identities=15%  Similarity=0.119  Sum_probs=144.9

Q ss_pred             cceeEEEeecCCCCEEEE-------eeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecC-
Q 013274           44 GSINSLQVDLTEERYLLS-------GASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD-  115 (446)
Q Consensus        44 ~~v~~l~~s~~~~~~l~s-------~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~-  115 (446)
                      ....+++|++ ++.++++       +..++.|.+||..++...          .+  . .....++...+.++.+.+ + 
T Consensus        18 ~~~~~~~~~~-~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~----------~~--~-~~~~~~~~~~~~~i~~~~-~~   82 (314)
T 1pjx_A           18 PGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT----------VI--C-KPEVNGYGGIPAGCQCDR-DA   82 (314)
T ss_dssp             TTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEE----------EE--E-CCEETTEECCEEEEEECS-SS
T ss_pred             CCccCceECC-CCCEEEEEeccccCCCCCCEEEEEeCCCCcEE----------EE--E-ecccCCCCCCCceEEEec-CC
Confidence            4567899985 6778888       678899999997655321          00  0 000123445577777765 5 


Q ss_pred             CcEEEEEeCCCeEEEEECCCCeeeEE-EecC-----CceEEeeeccCCCCceEEEEeeCC---------------CcEEE
Q 013274          116 TGLFVTGSYDHYVKVWDTNCTRVVMN-FKMP-----GKVYRTAMSPLAASHMLIAAGTED---------------VQVRL  174 (446)
Q Consensus       116 ~~~l~s~s~D~~i~iWd~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~lasgs~d---------------~~v~v  174 (446)
                      +.++++. .+..|.+||.+ ++.... ....     ..+..+++.+.   ..+.++...+               +.|..
T Consensus        83 g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~---g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~  157 (314)
T 1pjx_A           83 NQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYE---GNLWITAPAGEVAPADYTRSMQEKFGSIYC  157 (314)
T ss_dssp             SEEEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTT---SCEEEEECBCBCTTSCCCBTTSSSCEEEEE
T ss_pred             CcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCC---CCEEEEecCcccccccccccccCCCCeEEE
Confidence            5545544 44589999998 665432 2111     12455666553   2345554433               46777


Q ss_pred             EeCCCCceeeeeeCCCCCeEEEEEe----cCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeec
Q 013274          175 CDIASGAISQTLSGHRDGIMTVEWS----TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSIS  250 (446)
Q Consensus       175 wd~~~~~~~~~l~~h~~~v~sv~~s----~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (446)
                      +|.+ ++... +..+......++|+    |+++.++++...++.|.+||+...+.+.....                   
T Consensus       158 ~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~-------------------  216 (314)
T 1pjx_A          158 FTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKV-------------------  216 (314)
T ss_dssp             ECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEE-------------------
T ss_pred             ECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceE-------------------
Confidence            7765 54332 33344556889999    98876666767789999999752111100000                   


Q ss_pred             cccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccc-cCeEEEEEccCCCEEEEeec
Q 013274          251 KSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHY-GAVTGLKVTEDGMYLLSAGS  329 (446)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~fs~dg~~l~sgs~  329 (446)
                        .                                      .           ...++. +.+..++++++|.++++...
T Consensus       217 --~--------------------------------------~-----------~~~~~~~~~p~~i~~d~~G~l~v~~~~  245 (314)
T 1pjx_A          217 --W--------------------------------------G-----------HIPGTHEGGADGMDFDEDNNLLVANWG  245 (314)
T ss_dssp             --E--------------------------------------E-----------ECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred             --E--------------------------------------E-----------ECCCCCCCCCCceEECCCCCEEEEEcC
Confidence              0                                      0           000111 33677899999999888888


Q ss_pred             CCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCC--ceEEEEee
Q 013274          330 DSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMT--AVKAFDIW  384 (446)
Q Consensus       330 D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~  384 (446)
                      ++.|.+||..+++..    .........+..+++.+++..++++...  .+..|++.
T Consensus       246 ~~~i~~~d~~~g~~~----~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~  298 (314)
T 1pjx_A          246 SSHIEVFGPDGGQPK----MRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             TTEEEEECTTCBSCS----EEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             CCEEEEEcCCCCcEe----EEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence            899999998855421    1112222345667778888866665443  66666664

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.05  E-value=3e-07  Score=85.04  Aligned_cols=224  Identities=15%  Similarity=0.168  Sum_probs=132.8

Q ss_pred             EEEEeecCCc-EEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeee
Q 013274          108 SAIWYPVDTG-LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL  186 (446)
Q Consensus       108 ~~~~~~~~~~-~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l  186 (446)
                      ...|.+ +++ ++++...++.|..|+.. +.........+....+++.+.   ..++++...++.|.+||.+ ++. ..+
T Consensus        49 gp~~~~-~g~~l~~~d~~~~~i~~~~~~-g~~~~~~~~~~~~~gl~~d~d---G~l~v~~~~~~~v~~~~~~-g~~-~~~  121 (305)
T 3dr2_A           49 GPAWWE-AQRTLVWSDLVGRRVLGWRED-GTVDVLLDATAFTNGNAVDAQ---QRLVHCEHGRRAITRSDAD-GQA-HLL  121 (305)
T ss_dssp             EEEEEG-GGTEEEEEETTTTEEEEEETT-SCEEEEEESCSCEEEEEECTT---SCEEEEETTTTEEEEECTT-SCE-EEE
T ss_pred             CCeEeC-CCCEEEEEECCCCEEEEEeCC-CCEEEEeCCCCccceeeECCC---CCEEEEECCCCEEEEECCC-CCE-EEE
Confidence            456766 555 77888888999999984 443222223344566666653   3466665556789999986 543 222


Q ss_pred             eCC-----CCCeEEEEEecCCCeEEEE----eeC-------------CCcEEEEEccCCceeEEeecccccccCCCcccc
Q 013274          187 SGH-----RDGIMTVEWSTSSEWILVT----GGC-------------DGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLK  244 (446)
Q Consensus       187 ~~h-----~~~v~sv~~s~~~~~~l~S----~s~-------------Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~  244 (446)
                      ..+     ...+..++++|++. +++|    |..             .+.|..||..++...                  
T Consensus       122 ~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~------------------  182 (305)
T 3dr2_A          122 VGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQ------------------  182 (305)
T ss_dssp             ECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCE------------------
T ss_pred             EeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEE------------------
Confidence            211     12355678888776 3454    221             112222222111100                  


Q ss_pred             cceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEE
Q 013274          245 RKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL  324 (446)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l  324 (446)
                                                                                 ... .......++|+|||+.|
T Consensus       183 -----------------------------------------------------------~~~-~~~~p~gl~~spdg~~l  202 (305)
T 3dr2_A          183 -----------------------------------------------------------RMA-DLDHPNGLAFSPDEQTL  202 (305)
T ss_dssp             -----------------------------------------------------------EEE-EESSEEEEEECTTSSEE
T ss_pred             -----------------------------------------------------------EEe-cCCCCcceEEcCCCCEE
Confidence                                                                       000 12235778999999977


Q ss_pred             EEeecC------CcEEEEecCcCceeeeeeeEE-EeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEeccccc
Q 013274          325 LSAGSD------SRIRLWDVESGRNTLVNFETV-RLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYE  397 (446)
Q Consensus       325 ~sgs~D------~~i~lWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~  397 (446)
                      ..+...      +.|..|++..+.  +...... ......+..++..+++. +++++...+.+|+. +++.+..+..+. 
T Consensus       203 yv~~~~~~~~~~~~i~~~~~~~~~--l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~~gv~~~~~-~g~~~~~~~~~~-  277 (305)
T 3dr2_A          203 YVSQTPEQGHGSVEITAFAWRDGA--LHDRRHFASVPDGLPDGFCVDRGGW-LWSSSGTGVCVFDS-DGQLLGHIPTPG-  277 (305)
T ss_dssp             EEEECCC---CCCEEEEEEEETTE--EEEEEEEECCSSSCCCSEEECTTSC-EEECCSSEEEEECT-TSCEEEEEECSS-
T ss_pred             EEEecCCcCCCCCEEEEEEecCCC--ccCCeEEEECCCCCCCeEEECCCCC-EEEecCCcEEEECC-CCCEEEEEECCC-
Confidence            666554      789999987542  1111111 11123344567777877 44555667888887 677777777666 


Q ss_pred             ceEEEEEcCCCCEEEEeeCCCcEEE
Q 013274          398 YVNCCCFSSQDQELYTGGNDRQILV  422 (446)
Q Consensus       398 ~v~~~~fSpd~~~lvtgs~D~~v~v  422 (446)
                      .+.+++|+||++.|..++.++..++
T Consensus       278 ~~~~~~f~~d~~~L~it~~~~l~~~  302 (305)
T 3dr2_A          278 TASNCTFDQAQQRLFITGGPCLWML  302 (305)
T ss_dssp             CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred             ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence            5899999999988887777765555

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.01  E-value=5.1e-07  Score=83.16  Aligned_cols=236  Identities=12%  Similarity=0.088  Sum_probs=139.7

Q ss_pred             EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (446)
Q Consensus        38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~  117 (446)
                      +...+...--+..|++.++.++++...++.|..||.+++...           .+        .+...+.++.+.+ ++.
T Consensus         7 ~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-----------~~--------~~~~~~~~i~~~~-dG~   66 (297)
T 3g4e_A            7 VLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-----------RV--------TMDAPVSSVALRQ-SGG   66 (297)
T ss_dssp             EECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-----------EE--------ECSSCEEEEEEBT-TSS
T ss_pred             EeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-----------EE--------eCCCceEEEEECC-CCC
Confidence            334444455688898877788888888999999998764310           00        1223466667665 676


Q ss_pred             EEEEEeCCCeEEEEECCCCeeeEEEecC-----CceEEeeeccCCCCceEEEEe-eC--------CCcEEEEeCCCCcee
Q 013274          118 LFVTGSYDHYVKVWDTNCTRVVMNFKMP-----GKVYRTAMSPLAASHMLIAAG-TE--------DVQVRLCDIASGAIS  183 (446)
Q Consensus       118 ~l~s~s~D~~i~iWd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~lasg-s~--------d~~v~vwd~~~~~~~  183 (446)
                      ++++ . +..|.+||.++++........     ...+.+.+.+..   .++++. ..        ...-.+|.++.....
T Consensus        67 l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG---~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~  141 (297)
T 3g4e_A           67 YVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAG---RYFAGTMAEETAPAVLERHQGALYSLFPDHHV  141 (297)
T ss_dssp             EEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTS---CEEEEEEECCSBTTBCCTTCEEEEEECTTSCE
T ss_pred             EEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCC---CEEEecCCcccccccccCCCcEEEEEECCCCE
Confidence            5554 3 568999999887754333221     124556665532   344433 21        123345544432222


Q ss_pred             eeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEcc--CCceeEEeecccccccCCCcccccceeeccccccCCCCCc
Q 013274          184 QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR--RAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSV  261 (446)
Q Consensus       184 ~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (446)
                      ..+..+......++|+|+++.++++.+.++.|..||+.  ++... ...                               
T Consensus       142 ~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~-~~~-------------------------------  189 (297)
T 3g4e_A          142 KKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQIS-NRR-------------------------------  189 (297)
T ss_dssp             EEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEE-EEE-------------------------------
T ss_pred             EEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCccc-CcE-------------------------------
Confidence            23333445567899999998777787888999999873  22110 000                               


Q ss_pred             CCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcC
Q 013274          262 KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG  341 (446)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~  341 (446)
                                            ...                 ....+.+....|+++++|.+.++...++.|..||..++
T Consensus       190 ----------------------~~~-----------------~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG  230 (297)
T 3g4e_A          190 ----------------------SVY-----------------KLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG  230 (297)
T ss_dssp             ----------------------EEE-----------------ECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC
T ss_pred             ----------------------EEE-----------------ECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc
Confidence                                  000                 00011234678899999998888888889999999876


Q ss_pred             ceeeeeeeEEEeecCCCeEEEEc-CCCcEEEEe
Q 013274          342 RNTLVNFETVRLQTSKPIQLATT-QDPAVVFVP  373 (446)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  373 (446)
                      +..    .........+..+++. ++...+++.
T Consensus       231 ~~~----~~i~~p~~~~t~~~f~g~d~~~L~vt  259 (297)
T 3g4e_A          231 KRL----QTVKLPVDKTTSCCFGGKNYSEMYVT  259 (297)
T ss_dssp             CEE----EEEECSSSBEEEEEEESGGGCEEEEE
T ss_pred             eEE----EEEECCCCCceEEEEeCCCCCEEEEE
Confidence            532    1122222345566776 666666554

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.01  E-value=3.5e-08  Score=103.20  Aligned_cols=157  Identities=11%  Similarity=0.085  Sum_probs=95.2

Q ss_pred             CCccceeEEEeecCCCCEEEEeeCC-----CcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecC
Q 013274           41 PHKGSINSLQVDLTEERYLLSGASD-----SSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (446)
Q Consensus        41 ~H~~~v~~l~~s~~~~~~l~s~s~D-----g~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~  115 (446)
                      +|+..+..++||| +|++|+.++.+     .+|++||+++++...          .        ..+...+..+.|+| |
T Consensus       160 ~~~~~~~~~~~SP-DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~----------~--------~~~~~~~~~~~wsp-D  219 (741)
T 1yr2_A          160 DGATALDAWAASD-DGRLLAYSVQDGGSDWRTVKFVGVADGKPLA----------D--------ELKWVKFSGLAWLG-N  219 (741)
T ss_dssp             ---EEEEEEEECT-TSSEEEEEEEETTCSEEEEEEEETTTCCEEE----------E--------EEEEEESCCCEEST-T
T ss_pred             CCCEEEEeEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCC----------c--------cCCCceeccEEEEC-C
Confidence            3545788999997 67888877654     359999998765311          0        00111123456777 6


Q ss_pred             CcEEEEEeCCCe--------------EEEEECCCCee--eEEEecCC---ceEEeeeccCCCCceEEEEeeC-----CCc
Q 013274          116 TGLFVTGSYDHY--------------VKVWDTNCTRV--VMNFKMPG---KVYRTAMSPLAASHMLIAAGTE-----DVQ  171 (446)
Q Consensus       116 ~~~l~s~s~D~~--------------i~iWd~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~lasgs~-----d~~  171 (446)
                       +.|+.++.|..              |.+|++.++..  ...+....   ......+++++   ..|+..+.     +..
T Consensus       220 -~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG---~~l~~~~~~~~~~~~~  295 (741)
T 1yr2_A          220 -DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDG---RWVVITSSEGTDPVNT  295 (741)
T ss_dssp             -SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS---CEEEEEEECTTCSCCE
T ss_pred             -CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCC---CEEEEEEEccCCCcce
Confidence             77777777654              89999977652  22233222   35567777653   34444433     348


Q ss_pred             EEEEeCCCC--ceeeeeeCCCCCeEEEEEecCCCeEEEEeeC---CCcEEEEEccC
Q 013274          172 VRLCDIASG--AISQTLSGHRDGIMTVEWSTSSEWILVTGGC---DGAIRFWDIRR  222 (446)
Q Consensus       172 v~vwd~~~~--~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~---Dg~I~iWd~~~  222 (446)
                      |++||++++  .....+..+...+.... +|+++.+++.+..   ++.|.+||+.+
T Consensus       296 l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~  350 (741)
T 1yr2_A          296 VHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSG  350 (741)
T ss_dssp             EEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSS
T ss_pred             EEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCC
Confidence            999999887  32556666666665554 4788875544432   34588888765

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.01  E-value=6.3e-07  Score=82.00  Aligned_cols=234  Identities=12%  Similarity=0.109  Sum_probs=150.6

Q ss_pred             cEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecC---CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCc
Q 013274          105 AISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP---GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA  181 (446)
Q Consensus       105 ~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~  181 (446)
                      .+.++.+.+ ++.++++...++.|.+||.. ++... +..+   ..+..+++.+   +..+.++...++.|..+|.+ ++
T Consensus        21 ~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~---~g~l~v~~~~~~~v~~~d~~-g~   93 (300)
T 2qc5_A           21 GPYGITSSE-DGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSS---LGDIWFTENGANKIGKLSKK-GG   93 (300)
T ss_dssp             CEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECT---TSCEEEEETTTTEEEEECTT-SC
T ss_pred             CcceeeECC-CCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECC---CCCEEEEecCCCeEEEECCC-CC
Confidence            344555544 67777777778999999988 55432 3332   3355555554   23455665557889999988 55


Q ss_pred             ee-eeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCC
Q 013274          182 IS-QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSS  260 (446)
Q Consensus       182 ~~-~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (446)
                      .. ..+......+.++++.+++. ++++...++.|..||.. +... .+.                              
T Consensus        94 ~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~-~~~------------------------------  140 (300)
T 2qc5_A           94 FTEYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIY-EYD------------------------------  140 (300)
T ss_dssp             EEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEE-EEE------------------------------
T ss_pred             eEEecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEE-Ecc------------------------------
Confidence            43 22333456789999998876 45666667888888865 3211 000                              


Q ss_pred             cCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCc
Q 013274          261 VKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES  340 (446)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~  340 (446)
                                                                  .......+.+++++++|+..++...++.|..||. +
T Consensus       141 --------------------------------------------~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~  175 (300)
T 2qc5_A          141 --------------------------------------------LPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-T  175 (300)
T ss_dssp             --------------------------------------------CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-T
T ss_pred             --------------------------------------------CCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-C
Confidence                                                        0001123678899999998777777888999998 4


Q ss_pred             CceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEE-EecccccceEEEEEcCCCCEEEEeeCCC
Q 013274          341 GRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCL-TFRGHYEYVNCCCFSSQDQELYTGGNDR  418 (446)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~-~l~gH~~~v~~~~fSpd~~~lvtgs~D~  418 (446)
                      ++...  +. .......+..++..+++.+.+.... ..+..++. +++... .+..+...+.++++.++|++.++...++
T Consensus       176 g~~~~--~~-~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~  251 (300)
T 2qc5_A          176 GKLEE--YP-LPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGAN  251 (300)
T ss_dssp             CCEEE--EE-CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTT
T ss_pred             CcEEE--ee-CCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCC
Confidence            43211  11 1111223556777777766655543 46778877 555433 3445667789999999999888887789


Q ss_pred             cEEEeCCCC
Q 013274          419 QILVWCPSR  427 (446)
Q Consensus       419 ~v~vW~~~~  427 (446)
                      .|.+++++.
T Consensus       252 ~i~~~~~~g  260 (300)
T 2qc5_A          252 QIGRITNDN  260 (300)
T ss_dssp             EEEEECTTS
T ss_pred             eEEEECCCC
Confidence            999999853

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.96  E-value=5.7e-08  Score=92.06  Aligned_cols=282  Identities=8%  Similarity=-0.045  Sum_probs=158.2

Q ss_pred             EEEEEeCCC----eEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEe---------eCCCcEEEEeCCCCceee
Q 013274          118 LFVTGSYDH----YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAG---------TEDVQVRLCDIASGAISQ  184 (446)
Q Consensus       118 ~l~s~s~D~----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasg---------s~d~~v~vwd~~~~~~~~  184 (446)
                      .+++-..++    +|-+.|.++++.+.++...... .+.++++..  .++++.         ..++.|.+||+.+++.+.
T Consensus        34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~--~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~  110 (368)
T 1mda_H           34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGS--DFALASTSFARSAKGKRTDYVEVFDPVTFLPIA  110 (368)
T ss_dssp             EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC-EEEECTTSS--CEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE
T ss_pred             EEEECCccCCccceEEEEECCCCeEEEEEeCCCCC-ceEECCCCC--EEEEEcccccccccCCCCCEEEEEECCCCCEEE
Confidence            444555555    8889999999999988865544 688888643  233332         136789999999999988


Q ss_pred             eeeCC-------CCCeEEEEEecCCCeEEEEeeC-CCcEEE--EEccCCceeEEeecccccccCCCcccccceeeccccc
Q 013274          185 TLSGH-------RDGIMTVEWSTSSEWILVTGGC-DGAIRF--WDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLS  254 (446)
Q Consensus       185 ~l~~h-------~~~v~sv~~s~~~~~~l~S~s~-Dg~I~i--Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (446)
                      ++.-+       ......++|+|++++++++... +..+.+  +|+.+   ++.+...     .+...    .. .    
T Consensus       111 ~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-----~~~~~----~p-~----  173 (368)
T 1mda_H          111 DIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-----SCFHI----HP-G----  173 (368)
T ss_dssp             EEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-----SCCCC----EE-E----
T ss_pred             EEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-----CceEE----cc-C----
Confidence            88633       1234678999999986655433 467888  99876   3333210     00000    00 0    


Q ss_pred             cCCCCCcCCCCccccccCCCceeecccceeecCC--ccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCc
Q 013274          255 AGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKG--SVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSR  332 (446)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~  332 (446)
                             ..........++...      .+....  ....+.... ... ....+ ..+.   . ++++..++-.+. ++
T Consensus       174 -------g~~~~~~~~~dg~~~------~vd~~~~~~~~~~v~~~-~t~-~i~vg-~~P~---~-~~~~~~~~~vs~-~~  232 (368)
T 1mda_H          174 -------AAATHYLGSCPASLA------ASDLAAAPAAAGIVGAQ-CTG-AQNCS-SQAA---Q-ANYPGMLVWAVA-SS  232 (368)
T ss_dssp             -------ETTEEECCCCTTSCE------EEECCSSCCCCEECCCC-SCT-TSCBC-SCCE---E-ETTTTEEEECBS-SC
T ss_pred             -------CCeEEEEEcCCCCEE------EEECccccccCCeEEEE-eee-eeeCC-CCcc---c-cccCCEEEEEcC-CE
Confidence                   000000000000000      000000  000000000 000 00011 2233   3 555554444445 89


Q ss_pred             EEEEecCcCceeeee-eeE-------EEeecCCCeEEEEcCCCcEEEEeC----------CCceEEEEeecCceEEEecc
Q 013274          333 IRLWDVESGRNTLVN-FET-------VRLQTSKPIQLATTQDPAVVFVPC----------MTAVKAFDIWSGKTCLTFRG  394 (446)
Q Consensus       333 i~lWd~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~d~~~~~~~~~l~g  394 (446)
                      |.+.|+.+....+.. +..       ..........+++++++..+++..          ...+.++|..+++.+.++..
T Consensus       233 V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v  312 (368)
T 1mda_H          233 ILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN  312 (368)
T ss_dssp             CEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE
T ss_pred             EEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC
Confidence            999998764322211 000       000111112267888988877642          23567999999998888876


Q ss_pred             cccceEEEEEcCCCC-EEEEee-CCCcEEEeCCCCCC-CCCcCCCccCcc
Q 013274          395 HYEYVNCCCFSSQDQ-ELYTGG-NDRQILVWCPSRHI-SDGVDAGPMQDQ  441 (446)
Q Consensus       395 H~~~v~~~~fSpd~~-~lvtgs-~D~~v~vW~~~~~~-~~~~~~~~~~~~  441 (446)
                      .. ..+.++|+||++ ++++.. .+++|.|+|+.+.+ ...+..|+..+.
T Consensus       313 g~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~~  361 (368)
T 1mda_H          313 GH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPES  361 (368)
T ss_dssp             EE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCE
T ss_pred             CC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCCCE
Confidence            65 589999999998 567777 69999999998765 445555665443

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.95  E-value=6.9e-07  Score=86.35  Aligned_cols=155  Identities=10%  Similarity=-0.005  Sum_probs=98.2

Q ss_pred             cceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEe
Q 013274           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS  123 (446)
Q Consensus        44 ~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s  123 (446)
                      .....|+|++ +++++++...++.|++||++++...          .+  . ..   +.  ... +.+.+ +++.|+.+.
T Consensus       131 ~~P~~la~d~-~g~lyv~d~~~~~I~~id~~~g~~~----------~~--~-~~---~~--~~~-ia~~~-~g~~l~~~d  189 (409)
T 3hrp_A          131 KYMWGIAAVG-NNTVLAYQRDDPRVRLISVDDNKVT----------TV--H-PG---FK--GGK-PAVTK-DKQRVYSIG  189 (409)
T ss_dssp             CCEEEEEECS-TTEEEEEETTTTEEEEEETTTTEEE----------EE--E-ET---CC--BCB-CEECT-TSSEEEEEB
T ss_pred             CCceEEEEeC-CCCEEEEecCCCcEEEEECCCCEEE----------Ee--e-cc---CC--CCc-eeEec-CCCcEEEEe
Confidence            3567899986 5778888888899999998764321          00  0 00   11  111 44554 677888888


Q ss_pred             CCC--eEEEEECCCCeeeEEE----e-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeee----eeCCCCC
Q 013274          124 YDH--YVKVWDTNCTRVVMNF----K-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT----LSGHRDG  192 (446)
Q Consensus       124 ~D~--~i~iWd~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~----l~~h~~~  192 (446)
                      .++  .|.+|+...+.....+    . .......+++.+.  +..+++ +..++.|+.||.+++.....    ..++...
T Consensus       190 ~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~--~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~  266 (409)
T 3hrp_A          190 WEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDET--EEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGT  266 (409)
T ss_dssp             SSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTT--SSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred             cCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCC--CCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence            766  7888888765543333    1 1223455666653  233444 55678999999988764322    2233222


Q ss_pred             e--EEEEEecCCCeEEEEeeCCCcEEEEEccC
Q 013274          193 I--MTVEWSTSSEWILVTGGCDGAIRFWDIRR  222 (446)
Q Consensus       193 v--~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~  222 (446)
                      -  ..++|+|++..++++-..++.|+.||...
T Consensus       267 ~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g  298 (409)
T 3hrp_A          267 NPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG  298 (409)
T ss_dssp             SSCCEEEEETTTTEEEEEETTTTEEEEECTTC
T ss_pred             CccccEEEeCCCCEEEEEeCCCCEEEEEecCC
Confidence            2  28999996666778888889999998753

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.91  E-value=3.9e-07  Score=93.89  Aligned_cols=53  Identities=13%  Similarity=0.213  Sum_probs=41.9

Q ss_pred             CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCC
Q 013274          376 TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI  429 (446)
Q Consensus       376 ~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~  429 (446)
                      ..+..||+.+++.+-.+. +..+++...+++++.+++.++.|+.+++||..+++
T Consensus       457 g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~  509 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGE  509 (677)
T ss_dssp             EEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             cEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCc
Confidence            457889999998876665 33445666788888999999999999999998664

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.89  E-value=1.4e-06  Score=90.05  Aligned_cols=53  Identities=11%  Similarity=0.140  Sum_probs=41.8

Q ss_pred             CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCC
Q 013274          376 TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI  429 (446)
Q Consensus       376 ~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~  429 (446)
                      ..+..||+.+++.+-++..+.. +..-.++..+.+|+.|+.|+.++.||..+++
T Consensus       455 g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~tagglvf~gt~dg~l~a~D~~tG~  507 (689)
T 1yiq_A          455 GKLIAWDPVKQQAAWEVPYVTI-FNGGTLSTAGNLVFEGSADGRVIAYAADTGE  507 (689)
T ss_dssp             EEEEEEETTTTEEEEEEEESSS-CCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             eeEEEEECCCCCeEeEccCCCC-ccCccceECCCEEEEECCCCcEEEEECCCCc
Confidence            3478899999998777665543 3444677788899999999999999998764

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.86  E-value=5.2e-10  Score=106.89  Aligned_cols=144  Identities=15%  Similarity=0.137  Sum_probs=72.9

Q ss_pred             CCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCC
Q 013274           56 ERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNC  135 (446)
Q Consensus        56 ~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~  135 (446)
                      +..+++++.|+.|..||.++++..            ....     .  ..+.+..+.. ++.++++++.|+.|..||.++
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~~~------------W~~~-----~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~t   68 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGSIK------------WTLK-----E--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKN   68 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEE------------EEEE-----C--CCSCCCC------CCEEECTTTCCEEEC----
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEE------------EEec-----C--CCceecceEc-CCCEEEEeCCCCEEEEEECCC
Confidence            467899999999999999887531            0000     0  1122222222 456788888999999999998


Q ss_pred             CeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcE
Q 013274          136 TRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAI  215 (446)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I  215 (446)
                      ++.+..+...... .+..++.......+++|+.|+.|+.||.++|+.++.+..+..    +.++|++.. +++++.|+.|
T Consensus        69 G~~~w~~~~~~~~-~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~----~~~~p~~~~-v~~~~~dg~v  142 (369)
T 2hz6_A           69 NEGLTKLPFTIPE-LVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA----DSLSPSTSL-LYLGRTEYTI  142 (369)
T ss_dssp             -CCSEECSCCHHH-HHTTCSCC-----CCCCEEEEEEEEECCC---------------------------EEEEEEEEEE
T ss_pred             CceeeeeeccCcc-ccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc----ccccccCCE-EEEEecCCEE
Confidence            8876655432110 011122211223567778899999999999998888776542    345666654 6788889999


Q ss_pred             EEEEccCCce
Q 013274          216 RFWDIRRAGC  225 (446)
Q Consensus       216 ~iWd~~~~~~  225 (446)
                      +.||.++++.
T Consensus       143 ~a~d~~tG~~  152 (369)
T 2hz6_A          143 TMYDTKTREL  152 (369)
T ss_dssp             ECCCSSSSSC
T ss_pred             EEEECCCCCE
Confidence            9999987653

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.81  E-value=7.1e-09  Score=98.98  Aligned_cols=204  Identities=11%  Similarity=0.038  Sum_probs=109.9

Q ss_pred             CCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCC-e
Q 013274          115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDG-I  193 (446)
Q Consensus       115 ~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~-v  193 (446)
                      +++++++++.|+.|..||..+++.+..+.. +.+.+   .+...+..++++++.|+.|+.||.++|+.+..+..+... +
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s---~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~   83 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQ---VPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV   83 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCC---CC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCcee---cceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccc
Confidence            467899999999999999999999888776 43332   222233446777789999999999999877665443211 1


Q ss_pred             E-EEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccC
Q 013274          194 M-TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSAN  272 (446)
Q Consensus       194 ~-sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (446)
                      . +..+. .+. .+++++.|+.|+.||.++++.+-.+.                                          
T Consensus        84 ~~sp~~~-~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~------------------------------------------  119 (369)
T 2hz6_A           84 QASPCRS-SDG-ILYMGKKQDIWYVIDLLTGEKQQTLS------------------------------------------  119 (369)
T ss_dssp             TTCSCC-------CCCCEEEEEEEEECCC---------------------------------------------------
T ss_pred             ccCceEe-cCC-EEEEEeCCCEEEEEECCCCcEEEEec------------------------------------------
Confidence            1 11111 223 35678889999999998765321110                                          


Q ss_pred             CCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEE
Q 013274          273 GNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR  352 (446)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~  352 (446)
                                                        .+.    ...++|++..|++++.|+.|+.||..+++.... +....
T Consensus       120 ----------------------------------~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~-~~~~~  160 (369)
T 2hz6_A          120 ----------------------------------SAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWN-ATYFD  160 (369)
T ss_dssp             ---------------------------------------------------EEEEEEEEEEECCCSSSSSCCCE-EEEEE
T ss_pred             ----------------------------------CCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEe-Eeccc
Confidence                                              000    112345778888899999999999998864221 11111


Q ss_pred             eecCCCeEEEEcCC----CcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCE
Q 013274          353 LQTSKPIQLATTQD----PAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQE  410 (446)
Q Consensus       353 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~  410 (446)
                      .  ..   .+...+    +.+++......+..||..+++.+-++....-.+...++++|+..
T Consensus       161 ~--~~---~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~  217 (369)
T 2hz6_A          161 Y--AA---SLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLR  217 (369)
T ss_dssp             E--CC---BCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSCE
T ss_pred             c--cC---ccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCceE
Confidence            0  11   111221    33444344567889999888877665533333345566677653

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.77  E-value=6.3e-07  Score=92.86  Aligned_cols=118  Identities=8%  Similarity=0.051  Sum_probs=76.4

Q ss_pred             cCccccEeEEEEeecCCcEEE-----EEeCCCeEEEEECCCCeeeEEEecCCc-eEEeeeccCCCCceEEEEeeCC----
Q 013274          100 HGHKYAISSAIWYPVDTGLFV-----TGSYDHYVKVWDTNCTRVVMNFKMPGK-VYRTAMSPLAASHMLIAAGTED----  169 (446)
Q Consensus       100 ~gh~~~V~~~~~~~~~~~~l~-----s~s~D~~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lasgs~d----  169 (446)
                      .+|...+....++| |+++||     +|+++.+|++||+++++.+.. ...+. ...++|+ ++   ..|+.++.+    
T Consensus       125 ~~~~~~l~~~~~Sp-Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~k~~~~~Ws-Dg---~~l~y~~~~~~~~  198 (693)
T 3iuj_A          125 PDGTTALDQLSFSR-DGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKDVKFSGISWL-GN---EGFFYSSYDKPDG  198 (693)
T ss_dssp             TTSCCEEEEEEECT-TSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEEEESCCCEEE-TT---TEEEEEESSCCC-
T ss_pred             CCCcEEEEEEEECC-CCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCCceeccEEEe-CC---CEEEEEEecCccc
Confidence            34666777777776 888877     344457899999999886543 11111 1234555 33   345555555    


Q ss_pred             ---------CcEEEEeCCCCce----eeeeeC-CCCCeEEEEEecCCCeEEEEeeCC---CcEEEEEccCC
Q 013274          170 ---------VQVRLCDIASGAI----SQTLSG-HRDGIMTVEWSTSSEWILVTGGCD---GAIRFWDIRRA  223 (446)
Q Consensus       170 ---------~~v~vwd~~~~~~----~~~l~~-h~~~v~sv~~s~~~~~~l~S~s~D---g~I~iWd~~~~  223 (446)
                               ..|++|++.++..    +..... |.....++.|+|++++++++.+.+   +.|.++|+.++
T Consensus       199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~  269 (693)
T 3iuj_A          199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQE  269 (693)
T ss_dssp             ------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTST
T ss_pred             ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCC
Confidence                     3499999987642    333333 455678899999999877766533   57888988653

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.77  E-value=2.2e-07  Score=87.57  Aligned_cols=224  Identities=11%  Similarity=0.070  Sum_probs=138.4

Q ss_pred             cEeEEEEeecCCcEEEEEe--CCCeEEEEECCCCeeeEEEec--------CCceEEeeeccCCCCceEEEEeeC-----C
Q 013274          105 AISSAIWYPVDTGLFVTGS--YDHYVKVWDTNCTRVVMNFKM--------PGKVYRTAMSPLAASHMLIAAGTE-----D  169 (446)
Q Consensus       105 ~V~~~~~~~~~~~~l~s~s--~D~~i~iWd~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~lasgs~-----d  169 (446)
                      .+..+.+.+ ++.++++..  .++.++||.+.+++. ..+..        -..++.+++.+.   ..++++-..     +
T Consensus        18 ~p~~va~~~-~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~---g~L~v~D~g~~~~~~   92 (343)
T 2qe8_A           18 APGNITLTP-DGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGN---GIVWMLDNGNQSKSV   92 (343)
T ss_dssp             CEEEEEECT-TSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSS---SEEEEEECHHHHTSC
T ss_pred             CcceEEECC-CCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCC---CcEEEEcCCCCcCCC
Confidence            455666665 778888864  234366676655543 22221        123566676653   334444332     5


Q ss_pred             CcEEEEeCCCCceeeeeeC------CCCCeEEEEEecCCCeEEEEee---CCCcEEEEEccCCceeEEeecccccccCCC
Q 013274          170 VQVRLCDIASGAISQTLSG------HRDGIMTVEWSTSSEWILVTGG---CDGAIRFWDIRRAGCFRVLDQSQSQLGRRP  240 (446)
Q Consensus       170 ~~v~vwd~~~~~~~~~l~~------h~~~v~sv~~s~~~~~~l~S~s---~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~  240 (446)
                      ..|.+||+++++.+..+.-      +...+..+++++++..++++-.   .++.|.+||+.+++..+.+..+...     
T Consensus        93 ~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~-----  167 (343)
T 2qe8_A           93 PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGI-----  167 (343)
T ss_dssp             CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTT-----
T ss_pred             CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcc-----
Confidence            7899999999987665542      2235688999986666667766   7889999998766543322100000     


Q ss_pred             cccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccC
Q 013274          241 PLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED  320 (446)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~d  320 (446)
                                                                                       ..  .+   ..|.++
T Consensus       168 -----------------------------------------------------------------~~--~~---~~~~~~  177 (343)
T 2qe8_A          168 -----------------------------------------------------------------AP--ED---IDLVID  177 (343)
T ss_dssp             -----------------------------------------------------------------SC--CS---CCCEET
T ss_pred             -----------------------------------------------------------------cc--cc---cceeEC
Confidence                                                                             00  00   123456


Q ss_pred             CCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecC-----c-----eE-
Q 013274          321 GMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSG-----K-----TC-  389 (446)
Q Consensus       321 g~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~-----~~-  389 (446)
                      |..+.+.+.|++++.|...                  +.-+++++++..+++.....-++|.+...     .     .. 
T Consensus       178 g~~~~~~~~~g~~~~~~~~------------------~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  239 (343)
T 2qe8_A          178 GVPVQIGQPDGTVIRPHLG------------------VNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGS  239 (343)
T ss_dssp             TEECBEECTTSCEECCCCC------------------EEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHT
T ss_pred             CEEEEeccCCCceeceecc------------------cceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhc
Confidence            7777777788888777421                  12357788887777665444466665421     1     00 


Q ss_pred             -EEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274          390 -LTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS  426 (446)
Q Consensus       390 -~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~  426 (446)
                       ....++.+....++++++|+++++...++.|.+|++.
T Consensus       240 ~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~  277 (343)
T 2qe8_A          240 KIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSA  277 (343)
T ss_dssp             TCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETT
T ss_pred             ceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECC
Confidence             1233566677889999999999999999999999993

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.76  E-value=6.3e-05  Score=71.51  Aligned_cols=254  Identities=12%  Similarity=0.029  Sum_probs=146.6

Q ss_pred             eEEEeecCCCCEEEEee----------CCCcEEEEEcccCcCCCCCCccccccceEEe-ccccccCccccEeEEEEeecC
Q 013274           47 NSLQVDLTEERYLLSGA----------SDSSVAVYDVQRATDYEGGGHIAKHRSVFVV-DKQHEHGHKYAISSAIWYPVD  115 (446)
Q Consensus        47 ~~l~~s~~~~~~l~s~s----------~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~gh~~~V~~~~~~~~~  115 (446)
                      ..+.|+| ++++|..+.          .+++|.+||..+.+...   .+      .+. ......+  .....+.++| +
T Consensus        69 p~i~~sp-Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~---~i------~~~~~~~~~~g--~~p~~~~~sp-D  135 (373)
T 2mad_H           69 PNPVAAH-SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIA---DI------ELPDAPRFDVG--PYSWMNANTP-N  135 (373)
T ss_pred             CCeEECC-CCCEEEEEeccccccccCCCCCeEEEEECCCCcEEE---EE------ECCCccccccC--CCccceEECC-C
Confidence            4899997 566666664          36789999987643210   00      000 0000001  1122445665 8


Q ss_pred             CcEEEEEeC--CCeEEEEECCCCeeeEE-EecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeee-----
Q 013274          116 TGLFVTGSY--DHYVKVWDTNCTRVVMN-FKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS-----  187 (446)
Q Consensus       116 ~~~l~s~s~--D~~i~iWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~-----  187 (446)
                      +++|+.+..  +.+|.++| ++++.+.. +..++.   +.+.+..  ...+++.+.|+.+.++|. +++......     
T Consensus       136 G~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~--~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~  208 (373)
T 2mad_H          136 NADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGA--PSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAML  208 (373)
T ss_pred             CCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCC--CceEEEEcCCCCEEEEEC-CCcEEEEEeccccc
Confidence            888887764  58899999 99998887 766554   2333432  235566778999999999 876553221     


Q ss_pred             CCCCCe-EEEEEecCCCeEEEEeeCCCcEEEEEccCCcee--EEeecccccccCCCcccccceeeccccccCCCCCcCCC
Q 013274          188 GHRDGI-MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCF--RVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPR  264 (446)
Q Consensus       188 ~h~~~v-~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (446)
                      ....++ ....|.+++..+++.. .++.+.+.|+......  ..++...                               
T Consensus       209 ~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~-------------------------------  256 (373)
T 2mad_H          209 TAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKAPIDALS-------------------------------  256 (373)
T ss_pred             cCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEeeeeeecC-------------------------------
Confidence            111221 2344566655433333 5678888887543210  0000000                               


Q ss_pred             CccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeec----------CCcEE
Q 013274          265 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS----------DSRIR  334 (446)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~----------D~~i~  334 (446)
                                            ......             .-.......++|+||++.|.....          ++.|.
T Consensus       257 ----------------------~~~~~~-------------~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~  301 (373)
T 2mad_H          257 ----------------------GGRKAD-------------TWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVT  301 (373)
T ss_pred             ----------------------Cccccc-------------ceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEE
Confidence                                  000000             000112345778999987665432          35799


Q ss_pred             EEecCcCceeeeeeeEEEeecCCCeEEEEcCCCc-EEEEeC--CCceEEEEeecCceEEEe
Q 013274          335 LWDVESGRNTLVNFETVRLQTSKPIQLATTQDPA-VVFVPC--MTAVKAFDIWSGKTCLTF  392 (446)
Q Consensus       335 lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~d~~~~~~~~~l  392 (446)
                      ++|+.+.+..    ..+.. ...+..+++++|+. .+++..  .+.+.++|..+++...++
T Consensus       302 VID~~t~~vv----~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          302 SVTGLVGQTS----SQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             EEECCCCEEE----EEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence            9999886531    12211 23577889999988 666654  468999999999987763

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.71  E-value=2.2e-05  Score=74.67  Aligned_cols=278  Identities=15%  Similarity=0.118  Sum_probs=152.9

Q ss_pred             CEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCc--cccEeEEEEeecCCcEEEEEeCCCeEEEEECC
Q 013274           57 RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGH--KYAISSAIWYPVDTGLFVTGSYDHYVKVWDTN  134 (446)
Q Consensus        57 ~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh--~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~  134 (446)
                      ..|..++.++.|..+|.++++..=          ...........+  ...+.+....  ++..++.++.|+.|..+|.+
T Consensus        54 ~~v~~~~~~g~v~a~d~~tG~~~W----------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~  121 (376)
T 3q7m_A           54 NVVYAADRAGLVKALNADDGKEIW----------SVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTS  121 (376)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEE----------EEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETT
T ss_pred             CEEEEEcCCCeEEEEEccCCceee----------eecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECC
Confidence            457778889999999998765310          000000000000  1122222222  34577888899999999999


Q ss_pred             CCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCe-----EEEEEecCCCeEEEEe
Q 013274          135 CTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGI-----MTVEWSTSSEWILVTG  209 (446)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v-----~sv~~s~~~~~~l~S~  209 (446)
                      +++.+..+...+.+..   .+...+ ..+..++.++.|..+|.++|+.+..........     .+.... + .. ++.+
T Consensus       122 tG~~~W~~~~~~~~~~---~p~~~~-~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~-~~-v~~g  194 (376)
T 3q7m_A          122 DGTVAWQTKVAGEALS---RPVVSD-GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-F-GA-AVVG  194 (376)
T ss_dssp             TCCEEEEEECSSCCCS---CCEEET-TEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-T-TE-EEEC
T ss_pred             CCCEEEEEeCCCceEc---CCEEEC-CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-C-CE-EEEE
Confidence            9998877766543321   111112 256677889999999999999887765432211     222222 3 33 5677


Q ss_pred             eCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCc
Q 013274          210 GCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGS  289 (446)
Q Consensus       210 s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (446)
                      +.++.+..+|.++++..-........ +.                                        ....       
T Consensus       195 ~~~g~l~~~d~~tG~~~w~~~~~~~~-~~----------------------------------------~~~~-------  226 (376)
T 3q7m_A          195 GDNGRVSAVLMEQGQMIWQQRISQAT-GS----------------------------------------TEID-------  226 (376)
T ss_dssp             CTTTEEEEEETTTCCEEEEEECCC--------------------------------------------------------
T ss_pred             cCCCEEEEEECCCCcEEEEEecccCC-CC----------------------------------------cccc-------
Confidence            88999999999877653322110000 00                                        0000       


Q ss_pred             cccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcE
Q 013274          290 VRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAV  369 (446)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (446)
                         .+.          .....++    +  .+..+..++.++.+..+|..+++.... .     .......+.. .+..+
T Consensus       227 ---~~~----------~~~~~p~----~--~~~~v~~~~~~g~l~~~d~~tG~~~w~-~-----~~~~~~~~~~-~~~~l  280 (376)
T 3q7m_A          227 ---RLS----------DVDTTPV----V--VNGVVFALAYNGNLTALDLRSGQIMWK-R-----ELGSVNDFIV-DGNRI  280 (376)
T ss_dssp             ----------------CCCCCCE----E--ETTEEEEECTTSCEEEEETTTCCEEEE-E-----CCCCEEEEEE-ETTEE
T ss_pred             ---ccc----------ccCCCcE----E--ECCEEEEEecCcEEEEEECCCCcEEee-c-----cCCCCCCceE-ECCEE
Confidence               000          0000111    1  134555667888999999988763211 0     0111111222 23333


Q ss_pred             EEEeCCCceEEEEeecCceEEEecc-cccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCC
Q 013274          370 VFVPCMTAVKAFDIWSGKTCLTFRG-HYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI  429 (446)
Q Consensus       370 ~~~~~~~~~~~~d~~~~~~~~~l~g-H~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~  429 (446)
                      .+......+..+|..+++.+-.... ....+.....  .+..|+.++.++.|.++++.++.
T Consensus       281 ~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~  339 (376)
T 3q7m_A          281 YLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGR  339 (376)
T ss_dssp             EEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred             EEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCc
Confidence            3334446788899888887655542 2222233333  35678888899999999987664

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.70  E-value=8e-06  Score=76.21  Aligned_cols=94  Identities=11%  Similarity=0.001  Sum_probs=61.3

Q ss_pred             EEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeC
Q 013274          109 AIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG  188 (446)
Q Consensus       109 ~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~  188 (446)
                      ..|.+.++.++++...++.|..||.++++.. .+.....+..+.+.+.   +.++++ +. ..|.+||.++++.......
T Consensus        54 p~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v~~i~~~~d---g~l~v~-~~-~gl~~~d~~~g~~~~~~~~  127 (326)
T 2ghs_A           54 PTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKISD---SKQLIA-SD-DGLFLRDTATGVLTLHAEL  127 (326)
T ss_dssp             EEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEET---TEEEEE-ET-TEEEEEETTTCCEEEEECS
T ss_pred             CeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEECCCcceEEEEeCC---CeEEEE-EC-CCEEEEECCCCcEEEEeeC
Confidence            4566645667777778899999999877643 3455566777777654   334444 33 3599999988875332211


Q ss_pred             ---C-CCCeEEEEEecCCCeEEEEe
Q 013274          189 ---H-RDGIMTVEWSTSSEWILVTG  209 (446)
Q Consensus       189 ---h-~~~v~sv~~s~~~~~~l~S~  209 (446)
                         . ...+..+.++|+++. +++.
T Consensus       128 ~~~~~~~~~~~i~~d~~G~l-~v~~  151 (326)
T 2ghs_A          128 ESDLPGNRSNDGRMHPSGAL-WIGT  151 (326)
T ss_dssp             STTCTTEEEEEEEECTTSCE-EEEE
T ss_pred             CCCCCCCCCCCEEECCCCCE-EEEe
Confidence               1 235788999999874 4544

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.69  E-value=1.3e-05  Score=76.78  Aligned_cols=221  Identities=15%  Similarity=0.185  Sum_probs=134.0

Q ss_pred             CcEEEEEeCCCeEEEEECCCC----eeeEEEe---c---CC--ceEEeeeccCCCCceEEEEeeCC------CcEEEEeC
Q 013274          116 TGLFVTGSYDHYVKVWDTNCT----RVVMNFK---M---PG--KVYRTAMSPLAASHMLIAAGTED------VQVRLCDI  177 (446)
Q Consensus       116 ~~~l~s~s~D~~i~iWd~~~~----~~~~~~~---~---~~--~~~~~~~~~~~~~~~~lasgs~d------~~v~vwd~  177 (446)
                      ..+++++-.+.+|.+.|+.+.    +....+.   +   .+  ..+.+.+.+.   . ++++...+      +.|.+.|.
T Consensus        96 ~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pd---G-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           96 RFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPD---A-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSS---C-EEEEEEEETTSCSCCEEEEECT
T ss_pred             CEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCC---e-EEEEcCCCcCCCCCCeEEEEEC
Confidence            345667888899999999754    5555552   1   01  2233455554   2 34444333      68999999


Q ss_pred             CCCceeeeeeCCCCC---eEEEEEecCCCeEEEEee-------------------CCCcEEEEEccCCceeEEeeccccc
Q 013274          178 ASGAISQTLSGHRDG---IMTVEWSTSSEWILVTGG-------------------CDGAIRFWDIRRAGCFRVLDQSQSQ  235 (446)
Q Consensus       178 ~~~~~~~~l~~h~~~---v~sv~~s~~~~~~l~S~s-------------------~Dg~I~iWd~~~~~~~~~~~~~~~~  235 (446)
                      ++++.+.+++...++   -..+.|+|+++. |+|..                   .+.+|.+||+.+.+..+.++...  
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~-mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~--  248 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEV-LVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE--  248 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEETTTTE-EEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT--
T ss_pred             CCCeEEEEEccCCCCccccceEEECCCCCE-EEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC--
Confidence            999998888632222   224778999885 66764                   36899999998765443332100  


Q ss_pred             ccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEE
Q 013274          236 LGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGL  315 (446)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l  315 (446)
                                                                                             . ......|
T Consensus       249 -----------------------------------------------------------------------~-g~~P~~i  256 (462)
T 2ece_A          249 -----------------------------------------------------------------------E-NRMALEL  256 (462)
T ss_dssp             -----------------------------------------------------------------------T-EEEEEEE
T ss_pred             -----------------------------------------------------------------------C-CCcccee
Confidence                                                                                   0 0112344


Q ss_pred             EE--ccCCCEEEEee------cCCcEEEEecCcCceeeee---eeEEEee-------------cCCCeEEEEcCCCcEEE
Q 013274          316 KV--TEDGMYLLSAG------SDSRIRLWDVESGRNTLVN---FETVRLQ-------------TSKPIQLATTQDPAVVF  371 (446)
Q Consensus       316 ~f--s~dg~~l~sgs------~D~~i~lWd~~~~~~~~~~---~~~~~~~-------------~~~~~~~~~~~~~~~~~  371 (446)
                      .|  +|+|+++..+.      .+++|.+|....++-....   +......             ...+..+.+++|+..++
T Consensus       257 ~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLY  336 (462)
T 2ece_A          257 RPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLY  336 (462)
T ss_dssp             EECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEE
T ss_pred             EeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEE
Confidence            45  99999876655      5668877665543211111   1111100             13456788999999998


Q ss_pred             EeCC--CceEEEEeecC---ceEEEeccc-----------c---cceEEEEEcCCCCEEEEee
Q 013274          372 VPCM--TAVKAFDIWSG---KTCLTFRGH-----------Y---EYVNCCCFSSQDQELYTGG  415 (446)
Q Consensus       372 ~~~~--~~~~~~d~~~~---~~~~~l~gH-----------~---~~v~~~~fSpd~~~lvtgs  415 (446)
                      +++.  +.+.++|+.+.   ++...+...           .   +....+++||||++|+.+.
T Consensus       337 VSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          337 LSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             EEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            8754  68999998633   333333321           0   1358899999999988776

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.69  E-value=1.1e-05  Score=83.03  Aligned_cols=92  Identities=12%  Similarity=0.063  Sum_probs=57.0

Q ss_pred             CcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeC-CCceEEEEeecCceEEEecccc-cceEEEEEcCCC
Q 013274          331 SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHY-EYVNCCCFSSQD  408 (446)
Q Consensus       331 ~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~l~gH~-~~v~~~~fSpd~  408 (446)
                      +.|..||+.+++..-.    ... ........+...+.+++.++ ...+++||..+++.+.++.... ....-+.|++||
T Consensus       457 g~l~A~D~~tG~~~W~----~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G  531 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWS----VEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDG  531 (677)
T ss_dssp             EEEEEEETTTTEEEEE----EEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred             cEEEEEeCCCCcEEee----cCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCC
Confidence            7899999998864221    111 11111222334455666654 4689999999999998886443 334567788899


Q ss_pred             CEEEEe-eC----------------CCcEEEeCCCC
Q 013274          409 QELYTG-GN----------------DRQILVWCPSR  427 (446)
Q Consensus       409 ~~lvtg-s~----------------D~~v~vW~~~~  427 (446)
                      +.++.. +.                .+.+.++.+..
T Consensus       532 ~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~  567 (677)
T 1kb0_A          532 RQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG  567 (677)
T ss_dssp             EEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred             EEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence            765532 22                36788887763

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.63  E-value=9e-06  Score=76.99  Aligned_cols=114  Identities=11%  Similarity=-0.041  Sum_probs=82.2

Q ss_pred             ecCCcEEEEEeC-----CCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEe---------eCCCcEEEEeCC
Q 013274          113 PVDTGLFVTGSY-----DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAG---------TEDVQVRLCDIA  178 (446)
Q Consensus       113 ~~~~~~l~s~s~-----D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasg---------s~d~~v~vwd~~  178 (446)
                      ++++..++....     +++|.+.|..+++.+..+....... +.++++..  .++++.         ..++.|.+||..
T Consensus        41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~-va~spDG~--~lyVan~~~~r~~~G~~~~~VsviD~~  117 (386)
T 3sjl_D           41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPN-PVVADDGS--FIAHASTVFSRIARGERTDYVEVFDPV  117 (386)
T ss_dssp             CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCE-EEECTTSS--CEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred             CCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCc-EEECCCCC--EEEEEcccccccccCCCCCEEEEEECC
Confidence            346777766654     6899999999999998887644444 88888653  233332         135789999999


Q ss_pred             CCceeeeeeCCC-------CCeEEEEEecCCCeEEEEee-CCCcEEEEEccCCceeEEe
Q 013274          179 SGAISQTLSGHR-------DGIMTVEWSTSSEWILVTGG-CDGAIRFWDIRRAGCFRVL  229 (446)
Q Consensus       179 ~~~~~~~l~~h~-------~~v~sv~~s~~~~~~l~S~s-~Dg~I~iWd~~~~~~~~~~  229 (446)
                      +++.+..+.-..       ..-..+.|+|++++++++.. .++.|.++|+.+.+.+..+
T Consensus       118 t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI  176 (386)
T 3sjl_D          118 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRML  176 (386)
T ss_dssp             TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred             CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence            999888775221       23467899999998766643 3789999999987765544

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.57  E-value=3.3e-05  Score=73.33  Aligned_cols=257  Identities=11%  Similarity=0.069  Sum_probs=145.4

Q ss_pred             CEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCC
Q 013274           57 RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT  136 (446)
Q Consensus        57 ~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~  136 (446)
                      ..+..++.|+.|..+|.++++..-          ......   ......    ..   .+..++.++.|+.|..+|..++
T Consensus       104 ~~v~v~~~~g~l~a~d~~tG~~~W----------~~~~~~---~~~~~p----~~---~~~~v~v~~~~g~l~~~d~~tG  163 (376)
T 3q7m_A          104 GHVYIGSEKAQVYALNTSDGTVAW----------QTKVAG---EALSRP----VV---SDGLVLIHTSNGQLQALNEADG  163 (376)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEE----------EEECSS---CCCSCC----EE---ETTEEEEECTTSEEEEEETTTC
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEE----------EEeCCC---ceEcCC----EE---ECCEEEEEcCCCeEEEEECCCC
Confidence            457778899999999998765310          000000   000111    11   1347778889999999999999


Q ss_pred             eeeEEEecCCceEEee--eccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCC--C--------e-EEEEEecCCC
Q 013274          137 RVVMNFKMPGKVYRTA--MSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD--G--------I-MTVEWSTSSE  203 (446)
Q Consensus       137 ~~~~~~~~~~~~~~~~--~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~--~--------v-~sv~~s~~~~  203 (446)
                      +.+..+..........  ..+... ...+..++.++.+..+|.++|+..........  .        + ....+. + .
T Consensus       164 ~~~W~~~~~~~~~~~~~~~~~~~~-~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~-~-~  240 (376)
T 3q7m_A          164 AVKWTVNLDMPSLSLRGESAPTTA-FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV-N-G  240 (376)
T ss_dssp             CEEEEEECCC-----CCCCCCEEE-TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEE-T-T
T ss_pred             cEEEEEeCCCCceeecCCCCcEEE-CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEE-C-C
Confidence            9887776544332110  111111 23566778899999999999988776653211  0        1 111121 2 3


Q ss_pred             eEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccce
Q 013274          204 WILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGR  283 (446)
Q Consensus       204 ~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (446)
                      . ++.++.++.+..+|.++++..-...                                                     
T Consensus       241 ~-v~~~~~~g~l~~~d~~tG~~~w~~~-----------------------------------------------------  266 (376)
T 3q7m_A          241 V-VFALAYNGNLTALDLRSGQIMWKRE-----------------------------------------------------  266 (376)
T ss_dssp             E-EEEECTTSCEEEEETTTCCEEEEEC-----------------------------------------------------
T ss_pred             E-EEEEecCcEEEEEECCCCcEEeecc-----------------------------------------------------
Confidence            3 4566778999999987764321110                                                     


Q ss_pred             eecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEE
Q 013274          284 IPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLAT  363 (446)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (446)
                                               .+....+..  ++..|..++.++.|..+|..+++.... ...  ...........
T Consensus       267 -------------------------~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~-~~~--~~~~~~~~~~~  316 (376)
T 3q7m_A          267 -------------------------LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWT-QSD--LLHRLLTSPVL  316 (376)
T ss_dssp             -------------------------CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEE-ECT--TTTSCCCCCEE
T ss_pred             -------------------------CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEe-ecc--cCCCcccCCEE
Confidence                                     000122222  345666677899999999998864211 100  00001111111


Q ss_pred             cCCCcEEEEeCC-CceEEEEeecCceEEEecccccceE-EEEEcCCCCEEEEeeCCCcEEEeC
Q 013274          364 TQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVN-CCCFSSQDQELYTGGNDRQILVWC  424 (446)
Q Consensus       364 ~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~-~~~fSpd~~~lvtgs~D~~v~vW~  424 (446)
                        .+..++++.. ..+.++|..+++.+..+......+. ....  .+..|+.++.|+.|..|+
T Consensus       317 --~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          317 --YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             --ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred             --ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence              1344555544 5689999999998776665333332 2222  245677788899998885

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.54  E-value=4.4e-05  Score=78.75  Aligned_cols=79  Identities=14%  Similarity=0.091  Sum_probs=50.2

Q ss_pred             CCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccc-eEEEEEcCC
Q 013274          330 DSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEY-VNCCCFSSQ  407 (446)
Q Consensus       330 D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~-v~~~~fSpd  407 (446)
                      +++|+.||+.+++..-.    ..... ......+...+.++|.++. ..+++||..+|+.+-++....+. ..-+.|+.|
T Consensus       454 ~g~l~A~D~~tG~~~W~----~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~  528 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWE----VPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVD  528 (689)
T ss_dssp             EEEEEEEETTTTEEEEE----EEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred             ceeEEEEECCCCCeEeE----ccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEEC
Confidence            47899999999864221    11111 1111133334566777654 57999999999999887755433 356788899


Q ss_pred             CCEEEE
Q 013274          408 DQELYT  413 (446)
Q Consensus       408 ~~~lvt  413 (446)
                      |+..+.
T Consensus       529 G~qyv~  534 (689)
T 1yiq_A          529 GEQYVT  534 (689)
T ss_dssp             TEEEEE
T ss_pred             CEEEEE
Confidence            976553

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.52  E-value=5.2e-05  Score=77.94  Aligned_cols=71  Identities=13%  Similarity=0.164  Sum_probs=47.3

Q ss_pred             CcEEEEEeCCCeEEEEECCCCeeeEEEecCCc--eEEeeeccCCCCceEEEEeeC------CCcEEEEeCCCCceeeeee
Q 013274          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK--VYRTAMSPLAASHMLIAAGTE------DVQVRLCDIASGAISQTLS  187 (446)
Q Consensus       116 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~lasgs~------d~~v~vwd~~~~~~~~~l~  187 (446)
                      +..++.++.|+.|..+|.++++.+..+.....  ...+...|.-.+.. ++.+..      ++.|+.+|.++|+.+.++.
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  195 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGK-VIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCE-EEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence            35778888999999999999999877765321  11122222212233 334432      5899999999999888764

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.51  E-value=1e-05  Score=74.67  Aligned_cols=164  Identities=15%  Similarity=0.115  Sum_probs=104.7

Q ss_pred             eeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCc
Q 013274          182 ISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSV  261 (446)
Q Consensus       182 ~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (446)
                      .+..+..+........|+|+++.++++...++.|..|+.. ++ +..+                                
T Consensus        36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~--------------------------------   81 (305)
T 3dr2_A           36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VDVL--------------------------------   81 (305)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EEEE--------------------------------
T ss_pred             ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EEEE--------------------------------
Confidence            3445555556677899999998777888888999999863 32 1111                                


Q ss_pred             CCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcC
Q 013274          262 KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG  341 (446)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~  341 (446)
                                                                  ..+.+.+..++++++|+++++...++.|.+|+.. +
T Consensus        82 --------------------------------------------~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g  116 (305)
T 3dr2_A           82 --------------------------------------------LDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-G  116 (305)
T ss_dssp             --------------------------------------------EESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             --------------------------------------------eCCCCccceeeECCCCCEEEEECCCCEEEEECCC-C
Confidence                                                        0112347789999999977766667889999986 4


Q ss_pred             ceeeeeeeEE-EeecCCCeEEEEcCCCcEEEEe----C--------------CCceEEEEeecCceEEEecccccceEEE
Q 013274          342 RNTLVNFETV-RLQTSKPIQLATTQDPAVVFVP----C--------------MTAVKAFDIWSGKTCLTFRGHYEYVNCC  402 (446)
Q Consensus       342 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~--------------~~~~~~~d~~~~~~~~~l~gH~~~v~~~  402 (446)
                      +.... .... ......+..+++.+++.+.++.    .              ...+..++..+++.....  +....+.+
T Consensus       117 ~~~~~-~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl  193 (305)
T 3dr2_A          117 QAHLL-VGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGL  193 (305)
T ss_dssp             CEEEE-ECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEE
T ss_pred             CEEEE-EeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcce
Confidence            32211 1110 0112234567888888877752    1              123344444455544333  55667899


Q ss_pred             EEcCCCCEEEEeeCC------CcEEEeCCCC
Q 013274          403 CFSSQDQELYTGGND------RQILVWCPSR  427 (446)
Q Consensus       403 ~fSpd~~~lvtgs~D------~~v~vW~~~~  427 (446)
                      +|+||++.|+.+..+      +.|.+|+++.
T Consensus       194 ~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~  224 (305)
T 3dr2_A          194 AFSPDEQTLYVSQTPEQGHGSVEITAFAWRD  224 (305)
T ss_dssp             EECTTSSEEEEEECCC---CCCEEEEEEEET
T ss_pred             EEcCCCCEEEEEecCCcCCCCCEEEEEEecC
Confidence            999999987766555      6899988753

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.48  E-value=1.1e-05  Score=80.01  Aligned_cols=247  Identities=12%  Similarity=0.075  Sum_probs=133.6

Q ss_pred             CCcEE-EEEeCCCeEEEEECCCCeeeEEEecC--CceEEeeeccCCCCceEEEEe-----------------eCCCcEEE
Q 013274          115 DTGLF-VTGSYDHYVKVWDTNCTRVVMNFKMP--GKVYRTAMSPLAASHMLIAAG-----------------TEDVQVRL  174 (446)
Q Consensus       115 ~~~~l-~s~s~D~~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~lasg-----------------s~d~~v~v  174 (446)
                      |++++ ++...+..|.+-|+++.++...+..+  .....+++.....+..+++++                 -.++.+.+
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv  179 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  179 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence            34454 45556678999999999987755443  335555553211222333332                 23457999


Q ss_pred             EeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCC--------------CcEEEEEccCCceeEEeecccccccCCC
Q 013274          175 CDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCD--------------GAIRFWDIRRAGCFRVLDQSQSQLGRRP  240 (446)
Q Consensus       175 wd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~D--------------g~I~iWd~~~~~~~~~~~~~~~~~~~~~  240 (446)
                      .|.++.+...++.--. .-..++++|+++++++|+-..              ..|.+.|......  .     ...|+..
T Consensus       180 ID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~--~-----v~~Gk~~  251 (595)
T 1fwx_A          180 VDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK--A-----IAAGDYQ  251 (595)
T ss_dssp             EETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH--H-----HHHTCSE
T ss_pred             EECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeE--e-----ccCCCee
Confidence            9999998888776322 346677899999876555433              2244444332110  0     0000000


Q ss_pred             cccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccC
Q 013274          241 PLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED  320 (446)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~d  320 (446)
                      .+                               +.+........  .+...        .   ....-.....++.|+||
T Consensus       252 ~i-------------------------------~~V~VID~~~~--~~~~~--------~---~~Ipvg~~PhGv~~sPD  287 (595)
T 1fwx_A          252 EL-------------------------------NGVKVVDGRKE--ASSLF--------T---RYIPIANNPHGCNMAPD  287 (595)
T ss_dssp             EE-------------------------------TTEEEEECSGG--GCCSS--------E---EEEEEESSCCCEEECTT
T ss_pred             EE-------------------------------CcEEEEeCccc--CCcee--------E---EEEecCCCceEEEEcCC
Confidence            00                               00000000000  00000        0   00000112456899999


Q ss_pred             CCEE-EEeecCCcEEEEecCcCcee----ee---eeeEEEeecCCCeEEEEcCCCcEEEEe--CCCceEEEEeec-----
Q 013274          321 GMYL-LSAGSDSRIRLWDVESGRNT----LV---NFETVRLQTSKPIQLATTQDPAVVFVP--CMTAVKAFDIWS-----  385 (446)
Q Consensus       321 g~~l-~sgs~D~~i~lWd~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~-----  385 (446)
                      |+++ +++..+.+|.++|+.+.+..    +.   ...........+..++|++++ .+++.  ..+.+..|++.+     
T Consensus       288 Gk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~  366 (595)
T 1fwx_A          288 KKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAY  366 (595)
T ss_dssp             SSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHH
T ss_pred             CCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhh
Confidence            9975 56667899999999864210    00   000001112356778999999 65554  346788899977     


Q ss_pred             -----CceEEEecccccc-----eEEEEEcCCCCEEEEe
Q 013274          386 -----GKTCLTFRGHYEY-----VNCCCFSSQDQELYTG  414 (446)
Q Consensus       386 -----~~~~~~l~gH~~~-----v~~~~fSpd~~~lvtg  414 (446)
                           .+.+.++..|-.+     -..+.++|||++|++.
T Consensus       367 ~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~  405 (595)
T 1fwx_A          367 AGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCL  405 (595)
T ss_dssp             HTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEE
T ss_pred             cccccceeEEEeecccccccceeccceEeCCCCCEEEEc
Confidence                 4556666555433     2344679999999974

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.47  E-value=3.7e-05  Score=68.17  Aligned_cols=113  Identities=7%  Similarity=0.156  Sum_probs=79.6

Q ss_pred             EEeecCCcEEEEEeCCC--eEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeee
Q 013274          110 IWYPVDTGLFVTGSYDH--YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS  187 (446)
Q Consensus       110 ~~~~~~~~~l~s~s~D~--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~  187 (446)
                      ..+. ++.++.+.+.++  .|++.|+++++.+....+....+...+...  +..+......++.+.++|.++.+.+.+++
T Consensus        48 L~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~~ti~  124 (262)
T 3nol_A           48 FFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQVRSFN  124 (262)
T ss_dssp             EEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEEEEEE
T ss_pred             EEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEEEEEE
Confidence            3444 567778888876  999999999999998887766544434433  23455556678999999999999998887


Q ss_pred             CCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEe
Q 013274          188 GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVL  229 (446)
Q Consensus       188 ~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~  229 (446)
                      -.. .-+.++  ++++.+++| ..++.|.++|..+.+..+.+
T Consensus       125 ~~~-eG~glt--~dg~~L~~S-dGs~~i~~iDp~T~~v~~~I  162 (262)
T 3nol_A          125 YDG-EGWGLT--HNDQYLIMS-DGTPVLRFLDPESLTPVRTI  162 (262)
T ss_dssp             CSS-CCCCEE--ECSSCEEEC-CSSSEEEEECTTTCSEEEEE
T ss_pred             CCC-CceEEe--cCCCEEEEE-CCCCeEEEEcCCCCeEEEEE
Confidence            432 224444  466665544 45788999998876655444

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.42  E-value=0.00018  Score=69.30  Aligned_cols=269  Identities=12%  Similarity=0.086  Sum_probs=152.0

Q ss_pred             EEEeecCCCCEEEEee----------CCCcEEEEEcccCcCCCCCCccccccceEEeccccc-cCccccEeEEEEeecCC
Q 013274           48 SLQVDLTEERYLLSGA----------SDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHE-HGHKYAISSAIWYPVDT  116 (446)
Q Consensus        48 ~l~~s~~~~~~l~s~s----------~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gh~~~V~~~~~~~~~~  116 (446)
                      .|.++|+ +++|..+.          .+++|.++|..+.+...         .+.+...... .+  .....+.++| |+
T Consensus       122 gia~SpD-gk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~---------~I~v~g~~r~~~g--~~P~~~~~sp-DG  188 (426)
T 3c75_H          122 HPVAAED-GSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIA---------DIELPDAPRFLVG--TYQWMNALTP-DN  188 (426)
T ss_dssp             EEEECTT-SSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEE---------EEEETTCCCCCBS--CCGGGSEECT-TS
T ss_pred             ceEECCC-CCEEEEEeccccccccCCCCCEEEEEECCCCcEEE---------EEECCCccccccC--CCcceEEEcC-CC
Confidence            7999975 55454443          47789999998764211         1111000000 00  0011234444 88


Q ss_pred             cEEEEEeC--CCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeee----eeCCC
Q 013274          117 GLFVTGSY--DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT----LSGHR  190 (446)
Q Consensus       117 ~~l~s~s~--D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~----l~~h~  190 (446)
                      ++++.+..  +++|.+.|+.+++.+.++...+.   ....+..  ...+++.+.|+.+.+.++.+++....    +.-..
T Consensus       189 k~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g--~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~  263 (426)
T 3c75_H          189 KNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPAS--PTVFYMNCRDGSLARVDFADGETKVTNTEVFHTED  263 (426)
T ss_dssp             SEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEE--TTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTT
T ss_pred             CEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCC--CcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCC
Confidence            88888764  58999999999999988887653   1222322  13456667789998889866655422    21111


Q ss_pred             CCe-EEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCcccc
Q 013274          191 DGI-MTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKR  269 (446)
Q Consensus       191 ~~v-~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (446)
                      .++ ..+.|.++++.++++ +..+.+.+.|+...... .++...  +                                 
T Consensus       264 ~p~~~~~~~~~dg~~~~~~-s~~g~V~ViD~~~~~~~-v~~~~~--~---------------------------------  306 (426)
T 3c75_H          264 ELLINHPAFSLRSGRLVWP-TYTGKIFQADLTAEGAT-FRAPIE--A---------------------------------  306 (426)
T ss_dssp             SCBCSCCEECTTTCEEEEE-BTTSEEEEEEECSSCEE-ECCCEE--S---------------------------------
T ss_pred             CceeeEeeecCCCCEEEEE-eCCCcEEEEeccCCceE-Eeeeee--e---------------------------------
Confidence            221 235678887765444 45788888887643210 100000  0                                 


Q ss_pred             ccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeec----------CCcEEEEecC
Q 013274          270 SANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS----------DSRIRLWDVE  339 (446)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~----------D~~i~lWd~~  339 (446)
                                     .....+...             -.......++|+|||++|.....          +++|-++|+.
T Consensus       307 ---------------~~~~~i~~g-------------~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~  358 (426)
T 3c75_H          307 ---------------LTEAERADD-------------WRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAE  358 (426)
T ss_dssp             ---------------SCTTTGGGT-------------EEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETT
T ss_pred             ---------------ccccccccc-------------cccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECC
Confidence                           000000000             00011123578999886554421          3579999999


Q ss_pred             cCceeeeeeeEEEeecCCCeEEEEcCCCc-EEEEeC--CCceEEEEeecCceEEEe--cccccceEEEEEcCC
Q 013274          340 SGRNTLVNFETVRLQTSKPIQLATTQDPA-VVFVPC--MTAVKAFDIWSGKTCLTF--RGHYEYVNCCCFSSQ  407 (446)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~d~~~~~~~~~l--~gH~~~v~~~~fSpd  407 (446)
                      +.+... .+   .. ...+..+++++++. .+++..  .+.+.++|..+++.+.++  .|+.-   .+.++||
T Consensus       359 T~kvv~-~I---~v-g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI~~vG~~P---~~i~~~~  423 (426)
T 3c75_H          359 TGERIN-KI---EL-GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSVDQLGRGP---QIITTHD  423 (426)
T ss_dssp             TCCEEE-EE---EE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCSSSC---CEEECCC
T ss_pred             CCeEEE-EE---EC-CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEecCCCCCC---cEEEcCC
Confidence            875321 11   11 12466788999988 777765  478999999999998886  23322   2555665

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.37  E-value=0.00021  Score=66.12  Aligned_cols=218  Identities=13%  Similarity=0.115  Sum_probs=127.0

Q ss_pred             CcEEEEEeCCCeEEEEECCCCeeeEEEecCCce-EEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeE
Q 013274          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKV-YRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM  194 (446)
Q Consensus       116 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~  194 (446)
                      ...+..++.++.|..+|.. ++....+...... .......   +. .+..++.++.|..+|.+ ++....+......+.
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~---~g-~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~  180 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSE---DG-TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITS  180 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT---TS-CEEEECTTSEEEEECTT-SCEEEEEECSSCCCS
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcC---CC-EEEEEcCCCEEEEECCC-CCEeEEEecCCCcee
Confidence            3467778888999999988 7666555543321 1111111   22 35556778899999998 777766665566677


Q ss_pred             EEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCC
Q 013274          195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGN  274 (446)
Q Consensus       195 sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (446)
                      ++.+.+++. +++ ++  +.+..+| .++..+..+.                                            
T Consensus       181 ~~~~d~~g~-l~v-~t--~~l~~~d-~~g~~~~~~~--------------------------------------------  211 (330)
T 3hxj_A          181 AASIGKDGT-IYF-GS--DKVYAIN-PDGTEKWNFY--------------------------------------------  211 (330)
T ss_dssp             CCEECTTCC-EEE-ES--SSEEEEC-TTSCEEEEEC--------------------------------------------
T ss_pred             eeEEcCCCE-EEE-Ee--CEEEEEC-CCCcEEEEEc--------------------------------------------
Confidence            777766665 333 33  7788888 4443221110                                            


Q ss_pred             ceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEee
Q 013274          275 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQ  354 (446)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~  354 (446)
                                                      .....+.++.+.++|...+ ++.++.|..+|.. ++. ...+   ...
T Consensus       212 --------------------------------~~~~~~~~~~~~~~g~l~v-~t~~~gl~~~~~~-g~~-~~~~---~~~  253 (330)
T 3hxj_A          212 --------------------------------AGYWTVTRPAISEDGTIYV-TSLDGHLYAINPD-GTE-KWRF---KTG  253 (330)
T ss_dssp             --------------------------------CSSCCCSCCEECTTSCEEE-EETTTEEEEECTT-SCE-EEEE---ECS
T ss_pred             --------------------------------cCCcceeceEECCCCeEEE-EcCCCeEEEECCC-CCE-eEEe---eCC
Confidence                                            0001244556677776544 5667778888743 322 1111   111


Q ss_pred             cCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC
Q 013274          355 TSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH  428 (446)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~  428 (446)
                      ......+...+++.+.+......+..+|. +++....+......+.++.+.+++++.+ |+.+|.+.+...+..
T Consensus       254 ~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~-gt~~G~~~~~~~~~~  325 (330)
T 3hxj_A          254 KRIESSPVIGNTDTIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYF-GTRNGKFYALFNLEH  325 (330)
T ss_dssp             SCCCSCCEECTTSCEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEE-ECTTSCEEEEEC---
T ss_pred             CCccccceEcCCCeEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEE-EcCCCeEEEEecccc
Confidence            11112233344454444333347888885 6777666665666778888888887554 788999998866543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.35  E-value=6.2e-05  Score=72.04  Aligned_cols=189  Identities=15%  Similarity=0.164  Sum_probs=114.0

Q ss_pred             CceEEEEeeCCCcEEEEeCCCC----ceeeeee------CC-CCCeEEEEEecCCCeEEEEeeCC------CcEEEEEcc
Q 013274          159 SHMLIAAGTEDVQVRLCDIASG----AISQTLS------GH-RDGIMTVEWSTSSEWILVTGGCD------GAIRFWDIR  221 (446)
Q Consensus       159 ~~~~lasgs~d~~v~vwd~~~~----~~~~~l~------~h-~~~v~sv~~s~~~~~~l~S~s~D------g~I~iWd~~  221 (446)
                      ...+++.+-.++.|+++|+.+.    +..++++      .. ...-..+...|++  +++|+..+      |.|.+.|..
T Consensus        95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~~  172 (462)
T 2ece_A           95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLDHY  172 (462)
T ss_dssp             SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEECTT
T ss_pred             CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEECC
Confidence            3467778888899999999755    4555552      11 1123456778887  56777666      788888887


Q ss_pred             CCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccc
Q 013274          222 RAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSS  301 (446)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (446)
                      +.+.+..+.....                                                                   
T Consensus       173 T~~v~~~~~~~~~-------------------------------------------------------------------  185 (462)
T 2ece_A          173 SFEPLGKWEIDRG-------------------------------------------------------------------  185 (462)
T ss_dssp             TCCEEEECCSBCT-------------------------------------------------------------------
T ss_pred             CCeEEEEEccCCC-------------------------------------------------------------------
Confidence            7655443321000                                                                   


Q ss_pred             cccccccccCeEEEEEccCCCEEEEee-------------------cCCcEEEEecCcCceeeeeeeEEEeec--CCCeE
Q 013274          302 QDRATAHYGAVTGLKVTEDGMYLLSAG-------------------SDSRIRLWDVESGRNTLVNFETVRLQT--SKPIQ  360 (446)
Q Consensus       302 ~~~~~~h~~~v~~l~fs~dg~~l~sgs-------------------~D~~i~lWd~~~~~~~~~~~~~~~~~~--~~~~~  360 (446)
                          .  .+.-..+-|+|+++.++|..                   .+.+|.+||+.+++. .   ..+....  ..+..
T Consensus       186 ----~--~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~-~---~tI~vg~~g~~P~~  255 (462)
T 2ece_A          186 ----D--QYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR-I---HSLTLGEENRMALE  255 (462)
T ss_dssp             ----T--CCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE-E---EEEESCTTEEEEEE
T ss_pred             ----C--ccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE-e---eEEecCCCCCccce
Confidence                0  00012355789999888874                   368999999997632 1   1222210  12333


Q ss_pred             E--EEcCCCcEEEEeCC-------CceEEEEeecCce----EEEeccc----------------ccceEEEEEcCCCCEE
Q 013274          361 L--ATTQDPAVVFVPCM-------TAVKAFDIWSGKT----CLTFRGH----------------YEYVNCCCFSSQDQEL  411 (446)
Q Consensus       361 ~--~~~~~~~~~~~~~~-------~~~~~~d~~~~~~----~~~l~gH----------------~~~v~~~~fSpd~~~l  411 (446)
                      +  +++|++...++.+.       +.+.+|....++.    ...+...                ...+..+.+||||++|
T Consensus       256 i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfL  335 (462)
T 2ece_A          256 LRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFL  335 (462)
T ss_dssp             EEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEE
T ss_pred             eEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEE
Confidence            3  44888888877653       3555544433321    1111111                2457899999999998


Q ss_pred             EEeeC-CCcEEEeCCC
Q 013274          412 YTGGN-DRQILVWCPS  426 (446)
Q Consensus       412 vtgs~-D~~v~vW~~~  426 (446)
                      +.+-+ .+.|.++++.
T Consensus       336 YVSnrg~d~VavfdV~  351 (462)
T 2ece_A          336 YLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             EEEETTTTEEEEEECS
T ss_pred             EEEeCCCCEEEEEEec
Confidence            75444 7889999875

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.35  E-value=0.00026  Score=63.43  Aligned_cols=197  Identities=10%  Similarity=0.008  Sum_probs=125.1

Q ss_pred             eEEEEeecCCcEEEEEeC--CCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceee
Q 013274          107 SSAIWYPVDTGLFVTGSY--DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ  184 (446)
Q Consensus       107 ~~~~~~~~~~~~l~s~s~--D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~  184 (446)
                      ..+.+.+ ++.++++.+.  +++|++.|+.+++.+..+......+...+...  +..+.++...++.+.++|.++.+.+.
T Consensus        24 ~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~  100 (266)
T 2iwa_A           24 QGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIK  100 (266)
T ss_dssp             EEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEE
T ss_pred             ccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEE
Confidence            3455654 5655566553  68999999999999988876554333333332  23566666788999999999999888


Q ss_pred             eeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCC
Q 013274          185 TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPR  264 (446)
Q Consensus       185 ~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (446)
                      ++.-....-+.  ++++++.+++|- .++.|.+.|..+.+..+.+.....                              
T Consensus       101 ~i~~g~~~g~g--lt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~------------------------------  147 (266)
T 2iwa_A          101 NFTHQMKDGWG--LATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYN------------------------------  147 (266)
T ss_dssp             EEECCSSSCCE--EEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEET------------------------------
T ss_pred             EEECCCCCeEE--EEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCC------------------------------
Confidence            88632122233  455777766554 688999999887655444321000                              


Q ss_pred             CccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCcee
Q 013274          265 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNT  344 (446)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~  344 (446)
                                                               ......++.+.|. +|...+....++.|.+.|+.+++..
T Consensus       148 -----------------------------------------~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~  185 (266)
T 2iwa_A          148 -----------------------------------------GHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLL  185 (266)
T ss_dssp             -----------------------------------------TEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEE
T ss_pred             -----------------------------------------CcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEE
Confidence                                                     0001125677777 7766666667889999999998642


Q ss_pred             eeeeeEEEee-------------cCCCeEEEEcCCCcEEEEeCC--CceEEEEeec
Q 013274          345 LVNFETVRLQ-------------TSKPIQLATTQDPAVVFVPCM--TAVKAFDIWS  385 (446)
Q Consensus       345 ~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~  385 (446)
                      .    .+...             ...+.-+++.+++..+++.+.  ..+...++.+
T Consensus       186 ~----~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          186 G----WILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             E----EEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             E----EEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            1    11111             013456888998888887754  3555555543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.34  E-value=0.00041  Score=62.10  Aligned_cols=205  Identities=10%  Similarity=0.010  Sum_probs=124.5

Q ss_pred             eeeEEEecCCc--eEEeeeccCCCCceEEEEee--CCCcEEEEeCCCCceeeeeeC-CCCCeEEEEEecCCCeEEEEeeC
Q 013274          137 RVVMNFKMPGK--VYRTAMSPLAASHMLIAAGT--EDVQVRLCDIASGAISQTLSG-HRDGIMTVEWSTSSEWILVTGGC  211 (446)
Q Consensus       137 ~~~~~~~~~~~--~~~~~~~~~~~~~~~lasgs--~d~~v~vwd~~~~~~~~~l~~-h~~~v~sv~~s~~~~~~l~S~s~  211 (446)
                      +.+.++++...  ...+.+.++   +.++++.+  .++.|.++|+++++....+.- .......+++.  ++.+.++.-.
T Consensus        10 ~vv~~~p~~~~~f~~Gl~~~~d---g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~   84 (266)
T 2iwa_A           10 EVLNEFPHDPYAFTQGLVYAEN---DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWL   84 (266)
T ss_dssp             EEEEEEECCTTCCEEEEEECST---TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETT
T ss_pred             eEEEEEECCCCCCcccEEEeCC---CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEec
Confidence            34555655543  346666653   23444433  367999999999998877652 21222345554  4456666667


Q ss_pred             CCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccc
Q 013274          212 DGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVR  291 (446)
Q Consensus       212 Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (446)
                      ++.+.++|..+.+.+..+... .                                                         
T Consensus        85 ~~~v~viD~~t~~v~~~i~~g-~---------------------------------------------------------  106 (266)
T 2iwa_A           85 KNIGFIYDRRTLSNIKNFTHQ-M---------------------------------------------------------  106 (266)
T ss_dssp             CSEEEEEETTTTEEEEEEECC-S---------------------------------------------------------
T ss_pred             CCEEEEEECCCCcEEEEEECC-C---------------------------------------------------------
Confidence            899999999876655444210 0                                                         


Q ss_pred             cccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEE--eecCCCeEEEEcCCCcE
Q 013274          292 QRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR--LQTSKPIQLATTQDPAV  369 (446)
Q Consensus       292 ~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  369 (446)
                                     + .+    ..+++||+.|..+..+++|.++|..+.+... .+....  .....+..+.+. ++ .
T Consensus       107 ---------------~-~g----~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~-~I~Vg~~~~p~~~~nele~~-dg-~  163 (266)
T 2iwa_A          107 ---------------K-DG----WGLATDGKILYGSDGTSILYEIDPHTFKLIK-KHNVKYNGHRVIRLNELEYI-NG-E  163 (266)
T ss_dssp             ---------------S-SC----CEEEECSSSEEEECSSSEEEEECTTTCCEEE-EEECEETTEECCCEEEEEEE-TT-E
T ss_pred             ---------------C-Ce----EEEEECCCEEEEECCCCeEEEEECCCCcEEE-EEEECCCCcccccceeEEEE-CC-E
Confidence                           0 01    1245677766555568899999998865321 111100  001112334444 44 4


Q ss_pred             EEEeC--CCceEEEEeecCceEEEeccc-------------ccceEEEEEcCCCC-EEEEeeCCCcEEEeCCCC
Q 013274          370 VFVPC--MTAVKAFDIWSGKTCLTFRGH-------------YEYVNCCCFSSQDQ-ELYTGGNDRQILVWCPSR  427 (446)
Q Consensus       370 ~~~~~--~~~~~~~d~~~~~~~~~l~gH-------------~~~v~~~~fSpd~~-~lvtgs~D~~v~vW~~~~  427 (446)
                      +++..  .+.+.++|..+++....+.-.             ....+.++|+|+++ +++|+.....|.+-++..
T Consensus       164 lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          164 VWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             EEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             EEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            45543  468899999999988776432             13568999999975 577888888888776643

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.29  E-value=0.00017  Score=64.05  Aligned_cols=170  Identities=10%  Similarity=0.024  Sum_probs=104.5

Q ss_pred             ceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEE--EEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeeccccccc
Q 013274          160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT--VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLG  237 (446)
Q Consensus       160 ~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~s--v~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~  237 (446)
                      ..++.+.+.++.|+++|+++++.+..+.  ......  +++  .++.+.+..-.++.+.+||..+.+.++.+...     
T Consensus        65 ~~Ly~stG~~g~v~~iD~~Tgkv~~~~l--~~~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~-----  135 (268)
T 3nok_A           65 GHFFESTGHQGTLRQLSLESAQPVWMER--LGNIFAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQRERTTRYS-----  135 (268)
T ss_dssp             TEEEEEETTTTEEEECCSSCSSCSEEEE--CTTCCEEEEEE--CSSCEEEEESSSCEEEEEETTTTEEEEEEECS-----
T ss_pred             CEEEEEcCCCCEEEEEECCCCcEEeEEC--CCCcceeEEEE--eCCEEEEEEccCCEEEEEECCcCcEEEEEeCC-----
Confidence            4677777888899999999998877762  233333  454  44455666667899999999887765554210     


Q ss_pred             CCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEE
Q 013274          238 RRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKV  317 (446)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~f  317 (446)
                                                                                           + .+  .  .+
T Consensus       136 ---------------------------------------------------------------------~-eG--w--GL  141 (268)
T 3nok_A          136 ---------------------------------------------------------------------G-EG--W--GL  141 (268)
T ss_dssp             ---------------------------------------------------------------------S-CC--C--CE
T ss_pred             ---------------------------------------------------------------------C-ce--e--EE
Confidence                                                                                 0 01  1  12


Q ss_pred             ccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEE--eecCCCeEEEEcCCCcEEEEeC--CCceEEEEeecCceEEEec
Q 013274          318 TEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR--LQTSKPIQLATTQDPAVVFVPC--MTAVKAFDIWSGKTCLTFR  393 (446)
Q Consensus       318 s~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~l~  393 (446)
                      .+||+.|+.+..+++|.++|..+.+... .+....  ........+.+. ++. +++..  .+.+.++|..+++.+..+.
T Consensus       142 t~Dg~~L~vSdGs~~l~~iDp~T~~v~~-~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw~s~~I~vIDp~TG~V~~~Id  218 (268)
T 3nok_A          142 CYWNGKLVRSDGGTMLTFHEPDGFALVG-AVQVKLRGQPVELINELECA-NGV-IYANIWHSSDVLEIDPATGTVVGVID  218 (268)
T ss_dssp             EEETTEEEEECSSSEEEEECTTTCCEEE-EEECEETTEECCCEEEEEEE-TTE-EEEEETTCSEEEEECTTTCBEEEEEE
T ss_pred             ecCCCEEEEECCCCEEEEEcCCCCeEEE-EEEeCCCCcccccccccEEe-CCE-EEEEECCCCeEEEEeCCCCcEEEEEE
Confidence            3567766666568899999998865321 111100  001111223333 443 44443  4678889999998876554


Q ss_pred             cc-------------ccceEEEEEcCCC-CEEEEee
Q 013274          394 GH-------------YEYVNCCCFSSQD-QELYTGG  415 (446)
Q Consensus       394 gH-------------~~~v~~~~fSpd~-~~lvtgs  415 (446)
                      -.             .+-.+.+|+.|++ ++++||.
T Consensus       219 l~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          219 ASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             CHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             CCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            22             1356899999975 5566773

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.27  E-value=2.6e-05  Score=72.37  Aligned_cols=261  Identities=10%  Similarity=0.054  Sum_probs=142.2

Q ss_pred             EEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCe
Q 013274           48 SLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHY  127 (446)
Q Consensus        48 ~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~  127 (446)
                      ++.++. ++ .|..++.++.|..|| .++...-                 ....+...+.++... .++ .+..++.+  
T Consensus        24 ~~~~d~-~g-~l~v~t~~~~l~~~d-~~g~~~~-----------------~~~~~~~~~~~~~~~-~~g-~l~v~t~~--   79 (330)
T 3hxj_A           24 SPILAK-NG-TIYLGSSNKNLYAIN-TDGSVKW-----------------FFKSGEIIECRPSIG-KDG-TIYFGSDK--   79 (330)
T ss_dssp             CCEECT-TS-CEECSSTTTTTEEEC-TTSCEEE-----------------SSCGGGEEEECCEET-TTT-EECCSSCE--
T ss_pred             CceEcc-CC-eEEEEcCCCEEEEEC-CCCcEEE-----------------EEecCCCcccceEEe-cCC-cEEEecCc--
Confidence            344432 34 477778899999999 6554210                 000111122233332 244 45555555  


Q ss_pred             EEEEECCCCeeeEEEecCCceE-EeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEE
Q 013274          128 VKVWDTNCTRVVMNFKMPGKVY-RTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWIL  206 (446)
Q Consensus       128 i~iWd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l  206 (446)
                      |..+|. +++.+..+....... ...+.    + ..+..++.++.+..+|.+ ++.......+...+.++...+++.  +
T Consensus        80 l~~~d~-~g~~~~~~~~~~~~~~~~~~~----~-~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~--l  150 (330)
T 3hxj_A           80 VYAINP-DGTEKWRFDTKKAIVSDFTIF----E-DILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT--I  150 (330)
T ss_dssp             EEEECC-CGGGGGGSCC-----CCEEEE----T-TEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC--E
T ss_pred             EEEECC-CCcEEEEEECCCCcccCceEE----C-CEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE--E
Confidence            888886 555443333222211 11111    2 245667778899999998 777777666666667777776665  3


Q ss_pred             EEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeec
Q 013274          207 VTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPA  286 (446)
Q Consensus       207 ~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (446)
                      +.++.++.|..+|.. +..+..+..                                                       
T Consensus       151 ~vgt~~~~l~~~d~~-g~~~~~~~~-------------------------------------------------------  174 (330)
T 3hxj_A          151 YVGSNDNYLYAINPD-GTEKWRFKT-------------------------------------------------------  174 (330)
T ss_dssp             EEECTTSEEEEECTT-SCEEEEEEC-------------------------------------------------------
T ss_pred             EEEcCCCEEEEECCC-CCEeEEEec-------------------------------------------------------
Confidence            457778899999876 433221110                                                       


Q ss_pred             CCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCC
Q 013274          287 KGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQD  366 (446)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (446)
                                           ....+.++.+.++|...++.   +.|..+| .+++....    ..........+...++
T Consensus       175 ---------------------~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~----~~~~~~~~~~~~~~~~  225 (330)
T 3hxj_A          175 ---------------------NDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWN----FYAGYWTVTRPAISED  225 (330)
T ss_dssp             ---------------------SSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEE----ECCSSCCCSCCEECTT
T ss_pred             ---------------------CCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEE----EccCCcceeceEECCC
Confidence                                 00113334456677765543   7788998 55432111    1111122333445555


Q ss_pred             CcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC
Q 013274          367 PAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH  428 (446)
Q Consensus       367 ~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~  428 (446)
                      +.+.+......+..++ .+++....+......+..+.+.++++ |..++.++.|..++++..
T Consensus       226 g~l~v~t~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~~g~  285 (330)
T 3hxj_A          226 GTIYVTSLDGHLYAIN-PDGTEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINPDGT  285 (330)
T ss_dssp             SCEEEEETTTEEEEEC-TTSCEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEECTTSC
T ss_pred             CeEEEEcCCCeEEEEC-CCCCEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEECCCCc
Confidence            5555544446666665 35666555555555555666766664 556777888888887533

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.26  E-value=0.00039  Score=61.09  Aligned_cols=109  Identities=11%  Similarity=0.083  Sum_probs=78.6

Q ss_pred             CCcEEEEEeCCC--eEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCC
Q 013274          115 DTGLFVTGSYDH--YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDG  192 (446)
Q Consensus       115 ~~~~l~s~s~D~--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~  192 (446)
                      ++.++.|.+.++  .|+..|+++++.+....++...+...+...  +..+......++.+.++|.++.+.+.+++-.. .
T Consensus        30 ~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~-~  106 (243)
T 3mbr_X           30 RGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTPRARFRYPG-E  106 (243)
T ss_dssp             TTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEEEEECSS-C
T ss_pred             CCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCC-C
Confidence            366777878764  999999999999998888776544444443  23455666788999999999999998887433 2


Q ss_pred             eEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEe
Q 013274          193 IMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVL  229 (446)
Q Consensus       193 v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~  229 (446)
                      -+.++  ++++.+++| ..++.|.++|..+.+..+.+
T Consensus       107 Gwglt--~dg~~L~vS-dgs~~l~~iDp~t~~~~~~I  140 (243)
T 3mbr_X          107 GWALT--SDDSHLYMS-DGTAVIRKLDPDTLQQVGSI  140 (243)
T ss_dssp             CCEEE--ECSSCEEEE-CSSSEEEEECTTTCCEEEEE
T ss_pred             ceEEe--eCCCEEEEE-CCCCeEEEEeCCCCeEEEEE
Confidence            24555  456665555 45789999998876655544

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.26  E-value=0.0019  Score=57.90  Aligned_cols=219  Identities=11%  Similarity=0.037  Sum_probs=128.1

Q ss_pred             EeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecC-CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceee
Q 013274          106 ISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ  184 (446)
Q Consensus       106 V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~  184 (446)
                      +..+.+.+.++.++++-..++.|..++++........... .....+++.+.  +..++++-...+.|.++|++......
T Consensus        38 ~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~--~~~lyv~d~~~~~I~~~~~~g~~~~~  115 (267)
T 1npe_A           38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHL--GRTIFWTDSQLDRIEVAKMDGTQRRV  115 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETT--TTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             EEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEec--CCeEEEEECCCCEEEEEEcCCCCEEE
Confidence            4456666545556666667889999999765543322211 24556666553  23456666667889999987543322


Q ss_pred             eeeCCCCCeEEEEEecCCCeEEEEeeC--CCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcC
Q 013274          185 TLSGHRDGIMTVEWSTSSEWILVTGGC--DGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVK  262 (446)
Q Consensus       185 ~l~~h~~~v~sv~~s~~~~~~l~S~s~--Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (446)
                      .+.........++++|++.+++++...  .+.|..+++.... ...+.                                
T Consensus       116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~--------------------------------  162 (267)
T 1npe_A          116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILA--------------------------------  162 (267)
T ss_dssp             EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEE--------------------------------
T ss_pred             EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEE--------------------------------
Confidence            222222456889999976666565433  3567666653210 00000                                


Q ss_pred             CCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCE-EEEeecCCcEEEEecCcC
Q 013274          263 PRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMY-LLSAGSDSRIRLWDVESG  341 (446)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~-l~sgs~D~~i~lWd~~~~  341 (446)
                                                                 .........|++++++.+ +++....++|..+|+...
T Consensus       163 -------------------------------------------~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~  199 (267)
T 1npe_A          163 -------------------------------------------QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP  199 (267)
T ss_dssp             -------------------------------------------CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE
T ss_pred             -------------------------------------------ECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC
Confidence                                                       000123577899998654 466667789999998753


Q ss_pred             ceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeC--CCceEEEEeecCceEEEecccc-cceEEEEEcCCCC
Q 013274          342 RNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC--MTAVKAFDIWSGKTCLTFRGHY-EYVNCCCFSSQDQ  409 (446)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~l~gH~-~~v~~~~fSpd~~  409 (446)
                      ... ..+.    ....+..++..  ...++++.  ...+..+|..+++.+.++.... .....++++||+.
T Consensus       200 ~~~-~~~~----~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          200 GRR-KVLE----GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             EEE-EEEE----CCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             ceE-EEec----CCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence            211 1111    12233444433  34455543  3578888888888888776443 3578899999875

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.23  E-value=4e-05  Score=72.45  Aligned_cols=287  Identities=9%  Similarity=-0.038  Sum_probs=147.7

Q ss_pred             CCEEEEeeCCC----cEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEe--------
Q 013274           56 ERYLLSGASDS----SVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS--------  123 (446)
Q Consensus        56 ~~~l~s~s~Dg----~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s--------  123 (446)
                      .+..++...+.    +|.+.|..+.+...          .+.      .|.. .  .+.++| ++++++.+.        
T Consensus        32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~~----------~i~------vG~~-P--~i~~sp-Dg~~lyVan~~~~r~~~   91 (368)
T 1mda_H           32 RRSHITLPAYFAGTTENWVSCAGCGVTLG----------HSL------GAFL-S--LAVAGH-SGSDFALASTSFARSAK   91 (368)
T ss_dssp             TEEEEEECTTTCSSEEEEEEETTTTEEEE----------EEE------ECTT-C--EEEECT-TSSCEEEEEEEETTTTS
T ss_pred             CeEEEECCccCCccceEEEEECCCCeEEE----------EEe------CCCC-C--ceEECC-CCCEEEEEccccccccc
Confidence            34555555555    78899988764311          011      1221 1  345555 777777665        


Q ss_pred             --CCCeEEEEECCCCeeeEEEecC--------CceEEeeeccCCCCceEEEEeeC--CCcEEE--EeCCCCceeeeeeCC
Q 013274          124 --YDHYVKVWDTNCTRVVMNFKMP--------GKVYRTAMSPLAASHMLIAAGTE--DVQVRL--CDIASGAISQTLSGH  189 (446)
Q Consensus       124 --~D~~i~iWd~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~lasgs~--d~~v~v--wd~~~~~~~~~l~~h  189 (446)
                        .+++|.+||+.+++.+.++..+        ...+.+.++++..   +++.+..  +..|.+  +|+.+   +.++.-.
T Consensus        92 G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk---~lyVan~~~~~~v~V~~iD~~t---v~~i~v~  165 (368)
T 1mda_H           92 GKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA---CLLFFLFGSSAAAGLSVPGASD---DQLTKSA  165 (368)
T ss_dssp             SSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSS---CEEEEECSSSCEEEEEETTTEE---EEEEECS
T ss_pred             CCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCC---EEEEEccCCCCeEEEEEEchhh---ceEEECC
Confidence              4789999999999999988765        1234567777542   3444432  457888  89877   4444321


Q ss_pred             CCCeEEEEEecCCCeEEEEeeCCCcEEEEEccC-----CceeEEeecccccccCCCcccccceeeccccccCCCCCcCCC
Q 013274          190 RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR-----AGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPR  264 (446)
Q Consensus       190 ~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (446)
                       +.   +.+.|+++..+++.+.||.+.+.|+.+     ++.... ......++..+.                       
T Consensus       166 -~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~-~t~~i~vg~~P~-----------------------  217 (368)
T 1mda_H          166 -SC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQ-CTGAQNCSSQAA-----------------------  217 (368)
T ss_dssp             -SC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCC-SCTTSCBCSCCE-----------------------
T ss_pred             -Cc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEE-eeeeeeCCCCcc-----------------------
Confidence             11   123455555567888899988888865     221100 000000111100                       


Q ss_pred             CccccccCCCceeec---ccceeecCCccccccCCCcccccc-ccc-ccccCeEEEEEccCCCEEEEeec---------C
Q 013274          265 APQKRSANGNGVRQS---SVGRIPAKGSVRQRLHPGMLSSQD-RAT-AHYGAVTGLKVTEDGMYLLSAGS---------D  330 (446)
Q Consensus       265 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~h~~~v~~l~fs~dg~~l~sgs~---------D  330 (446)
                          ....+......   ....+...+..........+.... ... .+......++|+|||+++..+..         +
T Consensus       218 ----~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~  293 (368)
T 1mda_H          218 ----QANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAA  293 (368)
T ss_dssp             ----EETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCE
T ss_pred             ----ccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccC
Confidence                00000000000   000000000000000000000000 000 00111222679999987765432         2


Q ss_pred             CcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEE-eC--CCceEEEEeecCceEEEecccccceEEEEEcC
Q 013274          331 SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFV-PC--MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSS  406 (446)
Q Consensus       331 ~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSp  406 (446)
                      +.+.++|+.+.+.. ..+..    ...+..+++++++..+++ ..  .+.+.++|+.+++.+.++..... .+.++|.+
T Consensus       294 ~~~~ViD~~t~~vv-~~i~v----g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~-P~~i~~~~  366 (368)
T 1mda_H          294 ENTSSVTASVGQTS-GPISN----GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSVQN  366 (368)
T ss_dssp             EEEEEEESSSCCEE-ECCEE----EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEECCC
T ss_pred             CCEEEEECCCCeEE-EEEEC----CCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC-CCEEEeec
Confidence            35669999987532 11111    114667889999874443 33  57899999999999999987764 36666654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.17  E-value=0.00041  Score=61.52  Aligned_cols=108  Identities=6%  Similarity=-0.054  Sum_probs=78.4

Q ss_pred             CCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeE
Q 013274          115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM  194 (446)
Q Consensus       115 ~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~  194 (446)
                      ++.++.+.+.++.|++.|+++++.+... ++...+...+....  ..+......++.+.++|.++.+.+.+++-. ..-+
T Consensus        64 ~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g--~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~-~eGw  139 (268)
T 3nok_A           64 QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG--ERLYQLTWTEGLLFTWSGMPPQRERTTRYS-GEGW  139 (268)
T ss_dssp             TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS--SCEEEEESSSCEEEEEETTTTEEEEEEECS-SCCC
T ss_pred             CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC--CEEEEEEccCCEEEEEECCcCcEEEEEeCC-Ccee
Confidence            5678889999999999999999998888 76655443333332  345556667899999999999999888743 2334


Q ss_pred             EEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEe
Q 013274          195 TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVL  229 (446)
Q Consensus       195 sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~  229 (446)
                      .++  ++++.+++| ..++.|.++|..+.+..+.+
T Consensus       140 GLt--~Dg~~L~vS-dGs~~l~~iDp~T~~v~~~I  171 (268)
T 3nok_A          140 GLC--YWNGKLVRS-DGGTMLTFHEPDGFALVGAV  171 (268)
T ss_dssp             CEE--EETTEEEEE-CSSSEEEEECTTTCCEEEEE
T ss_pred             EEe--cCCCEEEEE-CCCCEEEEEcCCCCeEEEEE
Confidence            555  456665555 45889999998877655544

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.07  E-value=0.0056  Score=54.71  Aligned_cols=159  Identities=9%  Similarity=0.031  Sum_probs=96.7

Q ss_pred             cceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEe
Q 013274           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS  123 (446)
Q Consensus        44 ~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s  123 (446)
                      .....+++++.++.+.++-...+.|..++++....           .. ...     ..-.....+++.+.++.++++-.
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-----------~~-~~~-----~~~~~p~~ia~d~~~~~lyv~d~   98 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-----------TT-IIR-----QDLGSPEGIALDHLGRTIFWTDS   98 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-----------EE-EEC-----TTCCCEEEEEEETTTTEEEEEET
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-----------EE-EEE-----CCCCCccEEEEEecCCeEEEEEC
Confidence            45678999976667777777788999999864321           00 010     01123445666654455666666


Q ss_pred             CCCeEEEEECCCCeeeEEEecC-CceEEeeeccCCCCceEEEEeeC--CCcEEEEeCCCCceeeee-eCCCCCeEEEEEe
Q 013274          124 YDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTE--DVQVRLCDIASGAISQTL-SGHRDGIMTVEWS  199 (446)
Q Consensus       124 ~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lasgs~--d~~v~vwd~~~~~~~~~l-~~h~~~v~sv~~s  199 (446)
                      ..+.|.+++++........... .....+++.+..  ..++++...  .+.|..++++.... ..+ ...-.....++++
T Consensus        99 ~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~--g~lyv~~~~~~~~~I~~~~~dg~~~-~~~~~~~~~~P~gia~d  175 (267)
T 1npe_A           99 QLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVR--GNLYWTDWNRDNPKIETSHMDGTNR-RILAQDNLGLPNGLTFD  175 (267)
T ss_dssp             TTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTT--TEEEEEECCSSSCEEEEEETTSCCC-EEEECTTCSCEEEEEEE
T ss_pred             CCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCC--CEEEEEECCCCCcEEEEEecCCCCc-EEEEECCCCCCcEEEEc
Confidence            6789999998754322222211 234566666532  334444433  46888888865432 222 2233456889999


Q ss_pred             cCCCeEEEEeeCCCcEEEEEccC
Q 013274          200 TSSEWILVTGGCDGAIRFWDIRR  222 (446)
Q Consensus       200 ~~~~~~l~S~s~Dg~I~iWd~~~  222 (446)
                      ++++.++++-...+.|..+|+..
T Consensus       176 ~~~~~lyv~d~~~~~I~~~~~~g  198 (267)
T 1npe_A          176 AFSSQLCWVDAGTHRAECLNPAQ  198 (267)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTE
T ss_pred             CCCCEEEEEECCCCEEEEEecCC
Confidence            98777777777788999998753

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.06  E-value=0.0027  Score=63.77  Aligned_cols=73  Identities=11%  Similarity=0.150  Sum_probs=48.5

Q ss_pred             CcEEEEEeCCCeEEEEECCCCeeeEEEecCCce--EEeeeccCCCCceEEEEeeC-----CCcEEEEeCCCCceeeeeeC
Q 013274          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKV--YRTAMSPLAASHMLIAAGTE-----DVQVRLCDIASGAISQTLSG  188 (446)
Q Consensus       116 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~lasgs~-----d~~v~vwd~~~~~~~~~l~~  188 (446)
                      +..++.++.|+.+..+|..+++.+..+...+..  ..+...|.-.+..+++....     ++.|+.+|.++|+.+.++..
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  194 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence            457788888999999999999998877654311  11222222123334333332     78999999999998877653

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.04  E-value=0.0024  Score=56.59  Aligned_cols=163  Identities=15%  Similarity=0.144  Sum_probs=104.4

Q ss_pred             CCcc--ceeEEEeecCCCCEEEEeeCCC--cEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC
Q 013274           41 PHKG--SINSLQVDLTEERYLLSGASDS--SVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (446)
Q Consensus        41 ~H~~--~v~~l~~s~~~~~~l~s~s~Dg--~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~  116 (446)
                      +|..  ....|.|+  ++.+.+|.+.+|  +|+++|+++++...          .+.+     ..+..   ..-....+.
T Consensus        38 phd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~----------~~~l-----~~~~F---geGit~~g~   97 (262)
T 3nol_A           38 PHDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQ----------QIEL-----GKRYF---GEGISDWKD   97 (262)
T ss_dssp             ECCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEE----------EEEC-----CTTCC---EEEEEEETT
T ss_pred             cCCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEE----------EEec-----CCccc---eeEEEEeCC
Confidence            6654  44788887  468888888887  89999998875321          0001     11111   111111234


Q ss_pred             cEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCC--C---C
Q 013274          117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGH--R---D  191 (446)
Q Consensus       117 ~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h--~---~  191 (446)
                      .+++..-.++.+.++|.++.+.+.+++..+.-  ..++++  +..++++ ..++.|.++|.++.+...++.-.  .   .
T Consensus        98 ~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG--~glt~d--g~~L~~S-dGs~~i~~iDp~T~~v~~~I~V~~~g~~~~  172 (262)
T 3nol_A           98 KIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEG--WGLTHN--DQYLIMS-DGTPVLRFLDPESLTPVRTITVTAHGEELP  172 (262)
T ss_dssp             EEEEEESSSSEEEEEETTTCCEEEEEECSSCC--CCEEEC--SSCEEEC-CSSSEEEEECTTTCSEEEEEECEETTEECC
T ss_pred             EEEEEEeeCCEEEEEECccCcEEEEEECCCCc--eEEecC--CCEEEEE-CCCCeEEEEcCCCCeEEEEEEeccCCcccc
Confidence            44455556899999999999999998876532  233333  2334444 34678999999999887776532  1   2


Q ss_pred             CeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEee
Q 013274          192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLD  230 (446)
Q Consensus       192 ~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~  230 (446)
                      .+..+.|. +++ +++..-.++.|.+-|.+++++...++
T Consensus       173 ~lNELe~~-~G~-lyan~w~~~~I~vIDp~tG~V~~~Id  209 (262)
T 3nol_A          173 ELNELEWV-DGE-IFANVWQTNKIVRIDPETGKVTGIID  209 (262)
T ss_dssp             CEEEEEEE-TTE-EEEEETTSSEEEEECTTTCBEEEEEE
T ss_pred             ccceeEEE-CCE-EEEEEccCCeEEEEECCCCcEEEEEE
Confidence            34456776 554 55655567899999999988877764

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.03  E-value=0.0024  Score=63.32  Aligned_cols=102  Identities=12%  Similarity=0.030  Sum_probs=68.2

Q ss_pred             EccCCCEEEEeecCCcEEEEecCc--CceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC--CceEEEEeecCc-----
Q 013274          317 VTEDGMYLLSAGSDSRIRLWDVES--GRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAFDIWSGK-----  387 (446)
Q Consensus       317 fs~dg~~l~sgs~D~~i~lWd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~-----  387 (446)
                      +.++|+++.-    +.|.+.|..+  ++....   .+. ....+..+.++||+..+++...  +.+.++|+.+.+     
T Consensus       244 ~v~~Gk~~~i----~~V~VID~~~~~~~~~~~---~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~  315 (595)
T 1fwx_A          244 AIAAGDYQEL----NGVKVVDGRKEASSLFTR---YIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYE  315 (595)
T ss_dssp             HHHHTCSEEE----TTEEEEECSGGGCCSSEE---EEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHS
T ss_pred             eccCCCeeEE----CcEEEEeCcccCCceeEE---EEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccccc
Confidence            3456765443    4599999987  322011   111 1235667889999999888754  578999987542     


Q ss_pred             -------eEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCC
Q 013274          388 -------TCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR  427 (446)
Q Consensus       388 -------~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~  427 (446)
                             ...++.-- .....++|+|||...++.-.|++|.+|+.+.
T Consensus       316 ~l~~~~~v~~~v~vG-~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          316 NADPRSAVVAEPELG-LGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             CCCGGGGEEECCBCC-SCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             ccCcccceEEEcCCC-CCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence                   22333322 3468899999995556788899999999865

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.95  E-value=0.0067  Score=55.55  Aligned_cols=152  Identities=8%  Similarity=-0.009  Sum_probs=86.1

Q ss_pred             cceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEe
Q 013274           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS  123 (446)
Q Consensus        44 ~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s  123 (446)
                      .....+++++ +++++++-..++.|..||.+....           ..+.     .   ...+..+.+.+ ++.++++..
T Consensus        32 ~~pegia~~~-~g~lyv~d~~~~~I~~~d~~g~~~-----------~~~~-----~---~~~p~gia~~~-dG~l~vad~   90 (306)
T 2p4o_A           32 TFLENLASAP-DGTIFVTNHEVGEIVSITPDGNQQ-----------IHAT-----V---EGKVSGLAFTS-NGDLVATGW   90 (306)
T ss_dssp             CCEEEEEECT-TSCEEEEETTTTEEEEECTTCCEE-----------EEEE-----C---SSEEEEEEECT-TSCEEEEEE
T ss_pred             CCcceEEECC-CCCEEEEeCCCCeEEEECCCCceE-----------EEEe-----C---CCCceeEEEcC-CCcEEEEec
Confidence            4567899987 577888877889999998653210           0000     0   12344555554 666655544


Q ss_pred             CCC--eEEEEECCCCeeeEEEecCC--ceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCce-eeee---------eCC
Q 013274          124 YDH--YVKVWDTNCTRVVMNFKMPG--KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI-SQTL---------SGH  189 (446)
Q Consensus       124 ~D~--~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~-~~~l---------~~h  189 (446)
                      ...  .|..+|..+++.........  ....++..   .+..++++-..++.|+++|..++.. +...         .+.
T Consensus        91 ~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~---~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~  167 (306)
T 2p4o_A           91 NADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPL---SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESV  167 (306)
T ss_dssp             CTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEES---SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCC
T ss_pred             cCCcceEEEEcCCCCeEEEEEeCCCccccCccccc---CCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCC
Confidence            322  46667777776544333221  11222221   2334555555678899999876531 1100         011


Q ss_pred             CCCeEEEEEecCCCeEEEEeeCCCcEEEEEcc
Q 013274          190 RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR  221 (446)
Q Consensus       190 ~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~  221 (446)
                      -.....+  +|++++++++-...+.|..+|+.
T Consensus       168 ~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~  197 (306)
T 2p4o_A          168 FPAANGL--KRFGNFLYVSNTEKMLLLRIPVD  197 (306)
T ss_dssp             SCSEEEE--EEETTEEEEEETTTTEEEEEEBC
T ss_pred             CCcCCCc--CcCCCEEEEEeCCCCEEEEEEeC
Confidence            1223445  77777777777778889999875

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.95  E-value=0.0088  Score=60.07  Aligned_cols=58  Identities=9%  Similarity=0.072  Sum_probs=39.5

Q ss_pred             cEEEEeCCCCceeeeeeC--CC--------CCeEEEEEecCCC--eEEEEeeCCCcEEEEEccCCceeEEe
Q 013274          171 QVRLCDIASGAISQTLSG--HR--------DGIMTVEWSTSSE--WILVTGGCDGAIRFWDIRRAGCFRVL  229 (446)
Q Consensus       171 ~v~vwd~~~~~~~~~l~~--h~--------~~v~sv~~s~~~~--~~l~S~s~Dg~I~iWd~~~~~~~~~~  229 (446)
                      .|..+|.++|+.+..++.  |.        .++. +...++++  .+++.++.+|.+...|..+++.+-.+
T Consensus       273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~  342 (571)
T 2ad6_A          273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAE  342 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             EEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeee
Confidence            599999999998877753  21        2222 22223554  35677888999999999988765443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.88  E-value=0.00092  Score=68.55  Aligned_cols=81  Identities=12%  Similarity=0.217  Sum_probs=48.7

Q ss_pred             CCccceeEEEeecCCCCEEEEeeC-CCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEE
Q 013274           41 PHKGSINSLQVDLTEERYLLSGAS-DSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF  119 (446)
Q Consensus        41 ~H~~~v~~l~~s~~~~~~l~s~s~-Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l  119 (446)
                      ++.....++++.. ++++++.|+. +.++.+||..+.+..... .+          ......|.     +...+ +++++
T Consensus       240 ~~~~~~~~~~~~~-~g~lyv~GG~~~~~v~~yd~~t~~W~~~~-~~----------~~~R~~~s-----~~~~~-dg~iy  301 (656)
T 1k3i_A          240 KHDMFCPGISMDG-NGQIVVTGGNDAKKTSLYDSSSDSWIPGP-DM----------QVARGYQS-----SATMS-DGRVF  301 (656)
T ss_dssp             SCCCSSCEEEECT-TSCEEEECSSSTTCEEEEEGGGTEEEECC-CC----------SSCCSSCE-----EEECT-TSCEE
T ss_pred             CCCCccccccCCC-CCCEEEeCCCCCCceEEecCcCCceeECC-CC----------Cccccccc-----eEEec-CCeEE
Confidence            3444444566654 6789999984 568999998765432110 00          00111232     23332 77888


Q ss_pred             EEEe-CC-----CeEEEEECCCCeee
Q 013274          120 VTGS-YD-----HYVKVWDTNCTRVV  139 (446)
Q Consensus       120 ~s~s-~D-----~~i~iWd~~~~~~~  139 (446)
                      +.|| .+     ..+.+||..+.+..
T Consensus       302 v~GG~~~~~~~~~~~e~yd~~t~~W~  327 (656)
T 1k3i_A          302 TIGGSWSGGVFEKNGEVYSPSSKTWT  327 (656)
T ss_dssp             EECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred             EEeCcccCCcccccceEeCCCCCcce
Confidence            8888 45     57999999877644

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.88  E-value=0.0054  Score=61.83  Aligned_cols=69  Identities=10%  Similarity=0.115  Sum_probs=46.4

Q ss_pred             EEEEeCCCeEEEEECCCCeeeEEEecCCc--eEEeeeccCCCCceEEEEee------CCCcEEEEeCCCCceeeeeeC
Q 013274          119 FVTGSYDHYVKVWDTNCTRVVMNFKMPGK--VYRTAMSPLAASHMLIAAGT------EDVQVRLCDIASGAISQTLSG  188 (446)
Q Consensus       119 l~s~s~D~~i~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~lasgs------~d~~v~vwd~~~~~~~~~l~~  188 (446)
                      ++.++.|+.+..+|..+++.+-.......  .+.+...|.-.+.. ++.++      .++.|+.+|.++|+.+.++..
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~-V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~  200 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDK-VIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA  200 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTE-EEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCE-EEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence            77788999999999999999877665431  01112222212233 34443      378999999999998877653

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.83  E-value=0.012  Score=54.12  Aligned_cols=110  Identities=11%  Similarity=-0.002  Sum_probs=67.4

Q ss_pred             eEEEEEccCCCEE-EEeecCCcEEEEecCcCce-eeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-----------Cce
Q 013274          312 VTGLKVTEDGMYL-LSAGSDSRIRLWDVESGRN-TLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-----------TAV  378 (446)
Q Consensus       312 v~~l~fs~dg~~l-~sgs~D~~i~lWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~  378 (446)
                      ...|+++|+|++| ++-+.+++|..|++..... ....+.  . ... +.-++..+++.+.+....           ..+
T Consensus       187 p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~--~-~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v  262 (322)
T 2fp8_A          187 PGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV--K-IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKG  262 (322)
T ss_dssp             CCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEE--E-CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEE
T ss_pred             CcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEE--e-CCC-CCCeEECCCCCEEEEecCcccccccCCCccEE
Confidence            4568999999854 5556778999999875321 111111  1 122 556777787775444322           234


Q ss_pred             EEEEeecCceEEEeccc----ccceEEEEEcCCCCEEEEeeCCCcEEEeCCCC
Q 013274          379 KAFDIWSGKTCLTFRGH----YEYVNCCCFSSQDQELYTGGNDRQILVWCPSR  427 (446)
Q Consensus       379 ~~~d~~~~~~~~~l~gH----~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~  427 (446)
                      ..++- +++.+..+...    ...++++++ .++++.++....+.|.+++++.
T Consensus       263 ~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          263 IKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             EEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred             EEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence            44443 46666666544    245777877 5777788877888899998763

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.82  E-value=0.0077  Score=60.60  Aligned_cols=72  Identities=18%  Similarity=0.160  Sum_probs=47.4

Q ss_pred             CcEEEEEeCCCeEEEEECCCCeeeEEEecCCce--EEeeeccCCCCc-----eEEEEee------CCCcEEEEeCCCCce
Q 013274          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKV--YRTAMSPLAASH-----MLIAAGT------EDVQVRLCDIASGAI  182 (446)
Q Consensus       116 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-----~~lasgs------~d~~v~vwd~~~~~~  182 (446)
                      +..++.++.|+.|...|.++++.+-.+......  +.+..+|.-.+.     ..++.++      .++.|+.+|.++|+.
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~  196 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE  196 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence            457778889999999999999998777654310  111112211111     1455554      378999999999998


Q ss_pred             eeeee
Q 013274          183 SQTLS  187 (446)
Q Consensus       183 ~~~l~  187 (446)
                      +....
T Consensus       197 ~W~~~  201 (582)
T 1flg_A          197 IWMRP  201 (582)
T ss_dssp             EEEEE
T ss_pred             EeecC
Confidence            87654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.77  E-value=0.025  Score=53.71  Aligned_cols=220  Identities=6%  Similarity=-0.036  Sum_probs=124.7

Q ss_pred             CCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCC
Q 013274          124 YDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSE  203 (446)
Q Consensus       124 ~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~  203 (446)
                      ....|+..++.................+++.+.  +..++.+-...+.|+.++++.+.....+.........+++.+.+.
T Consensus        94 ~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~--~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g  171 (386)
T 3v65_B           94 NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHR--RELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHD  171 (386)
T ss_dssp             CBSCEEEECTTSCCCEEEECSCSCEEEEEEETT--TTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTT
T ss_pred             cCccceeeccCCCcEEEEecCCCccEEEEEecC--CCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCC
Confidence            346788888876654443333344555666543  345666666678899999887654433333333446677777666


Q ss_pred             eEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccce
Q 013274          204 WILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGR  283 (446)
Q Consensus       204 ~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (446)
                      .++++-...+.|.+.++..... ..+                                                      
T Consensus       172 ~lY~~d~~~~~I~~~~~dg~~~-~~l------------------------------------------------------  196 (386)
T 3v65_B          172 KLYWTDSGTSRIEVANLDGAHR-KVL------------------------------------------------------  196 (386)
T ss_dssp             EEEEEETTTTEEEECBTTSCSC-EEE------------------------------------------------------
T ss_pred             eEEEEcCCCCeEEEEeCCCCce-EEe------------------------------------------------------
Confidence            6666666666676666542110 000                                                      


Q ss_pred             eecCCccccccCCCcccccccccccccCeEEEEEccCCC-EEEEeecC-CcEEEEecCcCceeeeeeeEEEeecCCCeEE
Q 013274          284 IPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM-YLLSAGSD-SRIRLWDVESGRNTLVNFETVRLQTSKPIQL  361 (446)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~sgs~D-~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~  361 (446)
                        .                   .........|+++|.+. ++++-... +.|...++........ .   ......+.-+
T Consensus       197 --~-------------------~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~-~---~~~~~~PnGl  251 (386)
T 3v65_B          197 --L-------------------WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII-A---DTHLFWPNGL  251 (386)
T ss_dssp             --E-------------------CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE-E---CSSCSCEEEE
T ss_pred             --e-------------------cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEE-E---ECCCCCeeeE
Confidence              0                   00012357788888655 44554444 6788888765322111 0   0112245567


Q ss_pred             EEcCCCcEEEEeCC--CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274          362 ATTQDPAVVFVPCM--TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS  426 (446)
Q Consensus       362 ~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~  426 (446)
                      ++.++...++++..  ..+..+++........+.........+++ .++..+++-...+.|...+..
T Consensus       252 avd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~  317 (386)
T 3v65_B          252 TIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKF  317 (386)
T ss_dssp             EEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETT
T ss_pred             EEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECC
Confidence            88876666665533  45666665432222333444556788888 456677777778888888743

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.70  E-value=0.041  Score=53.06  Aligned_cols=112  Identities=11%  Similarity=0.037  Sum_probs=61.6

Q ss_pred             eEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCC----cEEEEeCCCCce
Q 013274          107 SSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV----QVRLCDIASGAI  182 (446)
Q Consensus       107 ~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~----~v~vwd~~~~~~  182 (446)
                      ..+++.|.+...|+.+...+.|+.+|++.+..............+++.+..  ..++++...++    .+.+++.+ +..
T Consensus       140 ~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G--~~lyvad~~~~~~~~~v~~~~~~-g~~  216 (430)
T 3tc9_A          140 VWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEA--DSMIITNDQNNNDRPNNYILTRE-SGF  216 (430)
T ss_dssp             CEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTS--SEEEEEECCSCTTSEEEEEEEGG-GTS
T ss_pred             CEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCC--CEEEEEeCCCCcccceEEEEeCC-Cce
Confidence            455665412334555544488999999877655444433445667776542  23455543222    23344433 322


Q ss_pred             e--eeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccC
Q 013274          183 S--QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR  222 (446)
Q Consensus       183 ~--~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~  222 (446)
                      .  ..+.. ......++++|++.+++++-..++.|..+|...
T Consensus       217 ~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~  257 (430)
T 3tc9_A          217 KVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTT  257 (430)
T ss_dssp             CSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTT
T ss_pred             eeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCC
Confidence            1  23322 233467788884445666666678888888764

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.69  E-value=0.023  Score=49.76  Aligned_cols=163  Identities=15%  Similarity=0.107  Sum_probs=105.6

Q ss_pred             CCcc--ceeEEEeecCCCCEEEEeeCCC--cEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC
Q 013274           41 PHKG--SINSLQVDLTEERYLLSGASDS--SVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (446)
Q Consensus        41 ~H~~--~v~~l~~s~~~~~~l~s~s~Dg--~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~  116 (446)
                      ||..  ....|.|+  ++.+..|.+.+|  +|+.+|+++++...          .+.     ...+..+. .+..  .++
T Consensus        16 phd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~tgkv~~----------~~~-----l~~~~fge-Gi~~--~~~   75 (243)
T 3mbr_X           16 PHDTTAFTEGLFYL--RGHLYESTGETGRSSVRKVDLETGRILQ----------RAE-----VPPPYFGA-GIVA--WRD   75 (243)
T ss_dssp             ECCTTCCEEEEEEE--TTEEEEEECCTTSCEEEEEETTTCCEEE----------EEE-----CCTTCCEE-EEEE--ETT
T ss_pred             CCCCccccccEEEE--CCEEEEECCCCCCceEEEEECCCCCEEE----------EEe-----CCCCccee-EEEE--eCC
Confidence            6764  45689997  367888888865  89999998875321          000     01111111 1122  244


Q ss_pred             cEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeC--CC---C
Q 013274          117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG--HR---D  191 (446)
Q Consensus       117 ~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~--h~---~  191 (446)
                      .++...-.++.+.++|.++.+.+.+++..+.-..+  +++  +..+++| ..++.|.++|.++.+...++.-  +.   .
T Consensus        76 ~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwgl--t~d--g~~L~vS-dgs~~l~~iDp~t~~~~~~I~V~~~g~~~~  150 (243)
T 3mbr_X           76 RLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWAL--TSD--DSHLYMS-DGTAVIRKLDPDTLQQVGSIKVTAGGRPLD  150 (243)
T ss_dssp             EEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEE--EEC--SSCEEEE-CSSSEEEEECTTTCCEEEEEECEETTEECC
T ss_pred             EEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEE--eeC--CCEEEEE-CCCCeEEEEeCCCCeEEEEEEEccCCcccc
Confidence            55556667899999999999999999876543333  332  2345555 4478899999999988777653  21   2


Q ss_pred             CeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEee
Q 013274          192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLD  230 (446)
Q Consensus       192 ~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~  230 (446)
                      .+..+.+. +++ +++..-.+..|.+-|.++++++..++
T Consensus       151 ~lNeLe~~-~G~-lyanvw~s~~I~vIDp~tG~V~~~id  187 (243)
T 3mbr_X          151 NLNELEWV-NGE-LLANVWLTSRIARIDPASGKVVAWID  187 (243)
T ss_dssp             CEEEEEEE-TTE-EEEEETTTTEEEEECTTTCBEEEEEE
T ss_pred             cceeeEEe-CCE-EEEEECCCCeEEEEECCCCCEEEEEE
Confidence            34556665 444 55555457889999999988877764

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.64  E-value=0.0025  Score=65.42  Aligned_cols=74  Identities=5%  Similarity=0.108  Sum_probs=49.3

Q ss_pred             cCCcEEEEEeCCC-------------------eEEEEECCCCeeeEEEecCCc----------eEEeeeccCCCCceEEE
Q 013274          114 VDTGLFVTGSYDH-------------------YVKVWDTNCTRVVMNFKMPGK----------VYRTAMSPLAASHMLIA  164 (446)
Q Consensus       114 ~~~~~l~s~s~D~-------------------~i~iWd~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~la  164 (446)
                      ++.++++.++.++                   .|..+|.++++.+-.++...+          .....+........+++
T Consensus       239 ~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~  318 (668)
T 1kv9_A          239 PELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLM  318 (668)
T ss_dssp             TTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEE
T ss_pred             CCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEE
Confidence            3556777777665                   499999999999888775311          11111111111123688


Q ss_pred             EeeCCCcEEEEeCCCCceeeeee
Q 013274          165 AGTEDVQVRLCDIASGAISQTLS  187 (446)
Q Consensus       165 sgs~d~~v~vwd~~~~~~~~~l~  187 (446)
                      .++.++.++++|.++|+.+...+
T Consensus       319 ~~~~~G~l~~lD~~tG~~l~~~~  341 (668)
T 1kv9_A          319 QAPKNGFFYVLDRTNGKLISAEK  341 (668)
T ss_dssp             ECCTTSEEEEEETTTCCEEEEEE
T ss_pred             EECCCCEEEEEECCCCCEecccc
Confidence            88999999999999999875443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.53  E-value=0.12  Score=53.95  Aligned_cols=283  Identities=11%  Similarity=0.109  Sum_probs=156.1

Q ss_pred             eeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCC
Q 013274           46 INSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYD  125 (446)
Q Consensus        46 v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D  125 (446)
                      |.++..+. ++.+. .|..++.+..||.+++....          .  .    ...+...|.++...+ ++.+ ..|..+
T Consensus       175 i~~i~~d~-~g~lw-igt~~~Gl~~~~~~~~~~~~----------~--~----~~~~~~~i~~i~~d~-~g~l-wigt~~  234 (795)
T 4a2l_A          175 IASTLYRQ-GDQIY-IGTSTDGLYTYSITQKTFEK----------V--I----PILGTKQIQAILQQS-PTRI-WVATEG  234 (795)
T ss_dssp             CEEEEEEE-TTEEE-EEESSSCEEEEETTTCCEEE----------C--C--------CCCEEEEEEEE-TTEE-EEEEBS
T ss_pred             eEEEEECC-CCCEE-EEECCCCEEEEeCCCCeEEE----------e--c----CCCCCCeeEEEEEcC-CCCE-EEEECC
Confidence            88888875 45544 46665568899876543110          0  0    001233466655544 4544 445545


Q ss_pred             CeEEEEECCCCeeeEEEec---------CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeC-------C
Q 013274          126 HYVKVWDTNCTRVVMNFKM---------PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG-------H  189 (446)
Q Consensus       126 ~~i~iWd~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~-------h  189 (446)
                      +-+.+||..+++... +..         ...+.++....  .+.  +-.|+.+ -|.+||..++........       .
T Consensus       235 ~Gl~~~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~--~g~--lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~  308 (795)
T 4a2l_A          235 AGLFLINPKTKEIKN-YLHSPSNPKSISSNYIRSLAMDS--QNR--LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLS  308 (795)
T ss_dssp             SCEEEEETTTTEEEE-ECCCTTCTTSCSCSBEEEEEECT--TSC--EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCS
T ss_pred             CCeEEEeCCCCeEEE-eecCCCCccccCCCeEEEEEEcC--CCC--EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCC
Confidence            458999987765433 221         12344444332  222  3334444 588999887754332211       2


Q ss_pred             CCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCcccc
Q 013274          190 RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKR  269 (446)
Q Consensus       190 ~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (446)
                      ...|.++...+++.  |..|+.++-|..|+..+.. +..+.....                                   
T Consensus       309 ~~~i~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~-~~~~~~~~~-----------------------------------  350 (795)
T 4a2l_A          309 QRSVRSIFMDSQGG--MWLGTYFGGLNYYHPIRNR-FKNIRNIPY-----------------------------------  350 (795)
T ss_dssp             SSCEEEEEECTTSC--EEEEESSSCEEEECGGGGS-SEEECCCTT-----------------------------------
T ss_pred             CCcEEEEEEeCCcC--EEEEECCCCeEEeCCCccc-ceEEcCCCC-----------------------------------
Confidence            35799999888775  4567777778888865432 111100000                                   


Q ss_pred             ccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeee
Q 013274          270 SANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFE  349 (446)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~  349 (446)
                                                .        ..-....|.++...++|...+ |+.++-|..||..+++.......
T Consensus       351 --------------------------~--------~~l~~~~V~~i~~d~~g~lWi-Gt~~~Gl~~~~~~~~~~~~~~~~  395 (795)
T 4a2l_A          351 --------------------------K--------NSLSDNVVSCIVEDKDKNLWI-GTNDGGLNLYNPITQRFTSYTLQ  395 (795)
T ss_dssp             --------------------------S--------SSCSCSSEEEEEECTTSCEEE-EESSSCEEEECTTTCCEEEECCC
T ss_pred             --------------------------C--------CCCCCCeeEEEEECCCCCEEE-EECCCCeEEEcCCCCcEEEEecC
Confidence                                      0        000123488999998887655 67776799999876542211100


Q ss_pred             EE----EeecCCCeEEEEcCCCcEEEEeC-CCceEEEEeecCceEEEec----ccccceEEEEEcCCCCEEEEeeCCCcE
Q 013274          350 TV----RLQTSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFR----GHYEYVNCCCFSSQDQELYTGGNDRQI  420 (446)
Q Consensus       350 ~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~l~----gH~~~v~~~~fSpd~~~lvtgs~D~~v  420 (446)
                      ..    .+.......++..+++..+++++ ...+..++..+++......    .+...|.++...++|++.+...  +-|
T Consensus       396 ~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~--~Gl  473 (795)
T 4a2l_A          396 EDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL--SAL  473 (795)
T ss_dssp             ------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES--SCE
T ss_pred             CCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec--Cce
Confidence            00    01112233445556666344444 4678888876665433221    2346799999999988766544  458


Q ss_pred             EEeCCCCCC
Q 013274          421 LVWCPSRHI  429 (446)
Q Consensus       421 ~vW~~~~~~  429 (446)
                      .+|++.+..
T Consensus       474 ~~~~~~~~~  482 (795)
T 4a2l_A          474 VRFNPEQRS  482 (795)
T ss_dssp             EEEETTTTE
T ss_pred             eEEeCCCCe
Confidence            888887653

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.46  E-value=0.072  Score=49.68  Aligned_cols=219  Identities=6%  Similarity=-0.038  Sum_probs=125.9

Q ss_pred             CCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCe
Q 013274          125 DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEW  204 (446)
Q Consensus       125 D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~  204 (446)
                      ...|+..++.................+++.+.  +..++.+-...+.|+.++++.+.....+.........+++.+.+..
T Consensus        52 ~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~--~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~  129 (349)
T 3v64_C           52 RIDIRQVLPHRSEYTLLLNNLENAIALDFHHR--RELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDK  129 (349)
T ss_dssp             BSCEEEECTTSCCEEEEECSCSCEEEEEEETT--TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTE
T ss_pred             ccceEEEeCCCCeeEEeecCCCceEEEEEecc--ccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCe
Confidence            34577777765544333333334455565543  3456666666788999998876544333333344567888876666


Q ss_pred             EEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeeccccee
Q 013274          205 ILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRI  284 (446)
Q Consensus       205 ~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (446)
                      ++++-...+.|.+.++..... ..+.                                                      
T Consensus       130 ly~~d~~~~~I~~~~~dG~~~-~~l~------------------------------------------------------  154 (349)
T 3v64_C          130 LYWTDSGTSRIEVANLDGAHR-KVLL------------------------------------------------------  154 (349)
T ss_dssp             EEEEETTTTEEEEEETTSCSC-EEEE------------------------------------------------------
T ss_pred             EEEEcCCCCeEEEEcCCCCce-EEEE------------------------------------------------------
Confidence            667766677888887653210 0000                                                      


Q ss_pred             ecCCccccccCCCcccccccccccccCeEEEEEccCC-CEEEEeecC-CcEEEEecCcCceeeeeeeEEEeecCCCeEEE
Q 013274          285 PAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDG-MYLLSAGSD-SRIRLWDVESGRNTLVNFETVRLQTSKPIQLA  362 (446)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~sgs~D-~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~  362 (446)
                                           .........|+++|.+ ..+.+-... ++|...++....... ...   .....+.-++
T Consensus       155 ---------------------~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~-~~~---~~~~~PnGla  209 (349)
T 3v64_C          155 ---------------------WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI-IAD---THLFWPNGLT  209 (349)
T ss_dssp             ---------------------CTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE-SCC---SSCSCEEEEE
T ss_pred             ---------------------eCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEE-EEE---CCCCCcceEE
Confidence                                 0001225778899854 445555555 778888876532111 010   1123456688


Q ss_pred             EcCCCcEEEEeCC--CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274          363 TTQDPAVVFVPCM--TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS  426 (446)
Q Consensus       363 ~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~  426 (446)
                      +.++...++++..  ..+..+++.-......+.........+++ .++...++-...+.|...+..
T Consensus       210 ~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~  274 (349)
T 3v64_C          210 IDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKF  274 (349)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETT
T ss_pred             EeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEcc
Confidence            8876666666533  45667776432223334444566788888 456666777677788888743

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.42  E-value=0.09  Score=49.79  Aligned_cols=114  Identities=8%  Similarity=-0.080  Sum_probs=69.2

Q ss_pred             EeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecC-CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceee
Q 013274          106 ISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ  184 (446)
Q Consensus       106 V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~  184 (446)
                      +..+.+.+.++.++.+-...+.|..++++.......+... .....+++.+.  +..++.+-...+.|.+.+++......
T Consensus       118 ~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~--~g~lY~~d~~~~~I~~~~~dg~~~~~  195 (386)
T 3v65_B          118 AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWV--HDKLYWTDSGTSRIEVANLDGAHRKV  195 (386)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETT--TTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred             cEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeC--CCeEEEEcCCCCeEEEEeCCCCceEE
Confidence            4466777656666667667789999998865533322211 11223444332  34455666667788888887654433


Q ss_pred             eeeCCCCCeEEEEEecCCCeEEEEeeCC-CcEEEEEcc
Q 013274          185 TLSGHRDGIMTVEWSTSSEWILVTGGCD-GAIRFWDIR  221 (446)
Q Consensus       185 ~l~~h~~~v~sv~~s~~~~~~l~S~s~D-g~I~iWd~~  221 (446)
                      .+...-.....+++.|.+.+++++-... +.|...++.
T Consensus       196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d  233 (386)
T 3v65_B          196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD  233 (386)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC
Confidence            3443445668899998777766665444 566666654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.41  E-value=0.17  Score=52.84  Aligned_cols=283  Identities=12%  Similarity=0.075  Sum_probs=157.3

Q ss_pred             cceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEe
Q 013274           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS  123 (446)
Q Consensus        44 ~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s  123 (446)
                      ..|++|..+. ++. |..|..+ .|.+||.+++....    +.      ........-....|.++..-+ ++ .+-.|.
T Consensus       263 ~~i~~i~~d~-~g~-lWigt~~-Gl~~~~~~~~~~~~----~~------~~~~~~~~l~~~~i~~i~~D~-~g-~lWigt  327 (795)
T 4a2l_A          263 NYIRSLAMDS-QNR-LWIGTFN-DLNIYHEGTDSFAS----YS------SNPVENGSLSQRSVRSIFMDS-QG-GMWLGT  327 (795)
T ss_dssp             SBEEEEEECT-TSC-EEEEESS-CEEEEETTTTEEEE----EC------CCTTSTTSCSSSCEEEEEECT-TS-CEEEEE
T ss_pred             CeEEEEEEcC-CCC-EEEEeCC-hhheEcCCCCeEEE----Ee------cCCCCCCCCCCCcEEEEEEeC-Cc-CEEEEE
Confidence            5689998875 455 4445444 58899876542100    00      000000011234576665543 44 566677


Q ss_pred             CCCeEEEEECCCCeeeEEEec--------CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeC-------
Q 013274          124 YDHYVKVWDTNCTRVVMNFKM--------PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG-------  188 (446)
Q Consensus       124 ~D~~i~iWd~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~-------  188 (446)
                      .++-|.+++..+.... .+..        ...+.++....  .+.  |-.|+.++-|..||..++........       
T Consensus       328 ~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~--~g~--lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~  402 (795)
T 4a2l_A          328 YFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDK--DKN--LWIGTNDGGLNLYNPITQRFTSYTLQEDESARG  402 (795)
T ss_dssp             SSSCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEECT--TSC--EEEEESSSCEEEECTTTCCEEEECCC------C
T ss_pred             CCCCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEECC--CCC--EEEEECCCCeEEEcCCCCcEEEEecCCCCcccC
Confidence            7788999987554322 2221        12244443322  222  34466677799999887754332211       


Q ss_pred             -CCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCcc
Q 013274          189 -HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQ  267 (446)
Q Consensus       189 -h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (446)
                       ....|.++...+++.. |..|+.++-+..||.+++... .+....                                  
T Consensus       403 l~~~~v~~i~~d~~g~~-lWigt~~~Gl~~~d~~~~~~~-~~~~~~----------------------------------  446 (795)
T 4a2l_A          403 IGSNNIKAVYVDEKKSL-VYIGTHAGGLSILHRNSGQVE-NFNQRN----------------------------------  446 (795)
T ss_dssp             CSCSCEEEEEEETTTTE-EEEEETTTEEEEEETTTCCEE-EECTTT----------------------------------
T ss_pred             CCCccEEEEEEcCCCCE-EEEEeCcCceeEEeCCCCcEE-EeecCC----------------------------------
Confidence             2357899988877751 345677677999997764321 110000                                  


Q ss_pred             ccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeee
Q 013274          268 KRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVN  347 (446)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~  347 (446)
                                                  +         ......|.++...++|...+.. .+ -|.+||..+++...  
T Consensus       447 ----------------------------~---------~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~~~~--  485 (795)
T 4a2l_A          447 ----------------------------S---------QLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQRSFTT--  485 (795)
T ss_dssp             ----------------------------S---------CCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTTEEEE--
T ss_pred             ----------------------------C---------CcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCCeEEE--
Confidence                                        0         0012348888888888866544 44 48899987754221  


Q ss_pred             eeEE----EeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEec-------ccccceEEEEEcCCCCEEEEeeC
Q 013274          348 FETV----RLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFR-------GHYEYVNCCCFSSQDQELYTGGN  416 (446)
Q Consensus       348 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~-------gH~~~v~~~~fSpd~~~lvtgs~  416 (446)
                      +...    .+.......+...+++.+.+... ..+..++..+++.  .+.       .+...|.++...++|++.++.. 
T Consensus       486 ~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-  561 (795)
T 4a2l_A          486 IEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-  561 (795)
T ss_dssp             CCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-
T ss_pred             ccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-
Confidence            1110    01111223344555565555444 7788888876654  222       2456799999999998766544 


Q ss_pred             CCcEEEeCCCCC
Q 013274          417 DRQILVWCPSRH  428 (446)
Q Consensus       417 D~~v~vW~~~~~  428 (446)
                      . -|..|++.+.
T Consensus       562 ~-Gl~~~d~~~~  572 (795)
T 4a2l_A          562 E-GFYCFNEKDK  572 (795)
T ss_dssp             S-CEEEEETTTT
T ss_pred             C-CceeECCCCC
Confidence            2 5778887654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.38  E-value=0.11  Score=49.97  Aligned_cols=241  Identities=12%  Similarity=0.041  Sum_probs=125.2

Q ss_pred             EeEEEEeec-CCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCC---C-cEEEEeCCCC
Q 013274          106 ISSAIWYPV-DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTED---V-QVRLCDIASG  180 (446)
Q Consensus       106 V~~~~~~~~-~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d---~-~v~vwd~~~~  180 (446)
                      ...+++.+. +...|+.+...+.|+.+|+.+++.............+++.+..   .++++-..+   . .+...+...+
T Consensus       141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG---~lyVad~~~~~~~~gv~~~~~~~~  217 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNG---DMVVVDDQSSDTNTGIYLFTRASG  217 (433)
T ss_dssp             CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTC---CEEEEECCSCTTSEEEEEECGGGT
T ss_pred             CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCC---CEEEEcCCCCcccceEEEEECCCC
Confidence            345666652 2334444444489999999887766544333345667776643   244443311   1 1333333222


Q ss_pred             ce-eeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCC
Q 013274          181 AI-SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNS  259 (446)
Q Consensus       181 ~~-~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (446)
                      .. ...+. .-.....++++|.+..++++-..++.|+.+|..++.....+-                             
T Consensus       218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~-----------------------------  267 (433)
T 4hw6_A          218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEV-----------------------------  267 (433)
T ss_dssp             TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEE-----------------------------
T ss_pred             eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEe-----------------------------
Confidence            11 01121 223345677888334455666667778888775443211100                             


Q ss_pred             CcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCC-EEEEeecCCcEEEEec
Q 013274          260 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM-YLLSAGSDSRIRLWDV  338 (446)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~sgs~D~~i~lWd~  338 (446)
                                                ..                   +....-..|+|+|+|. ++++-...++|+.++.
T Consensus       268 --------------------------~~-------------------~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~  302 (433)
T 4hw6_A          268 --------------------------MM-------------------DTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDY  302 (433)
T ss_dssp             --------------------------EC-------------------SCCSSCEEEEECTTSSEEEEEETTTTEEEEEEB
T ss_pred             --------------------------cc-------------------CCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeC
Confidence                                      00                   0001123589999998 5566677788999876


Q ss_pred             Cc--Ccee-eeeeeEE------------EeecCCCeEEEE---------cCCCcEEEEeCC-CceEEEEeecCceEEEec
Q 013274          339 ES--GRNT-LVNFETV------------RLQTSKPIQLAT---------TQDPAVVFVPCM-TAVKAFDIWSGKTCLTFR  393 (446)
Q Consensus       339 ~~--~~~~-~~~~~~~------------~~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~  393 (446)
                      ..  +.-. ...+...            ......+..+++         .+++.+.++... ..++.++. ++. +.++.
T Consensus       303 d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~-v~t~~  380 (433)
T 4hw6_A          303 NRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR-VTTYA  380 (433)
T ss_dssp             CTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE-EEEEE
T ss_pred             CCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC-EEEEE
Confidence            52  2110 0000000            001123445666         444444444332 35666653 443 33332


Q ss_pred             cc------------------ccceEEEEEc-CCCCEEEEeeCCCcEEEeCCC
Q 013274          394 GH------------------YEYVNCCCFS-SQDQELYTGGNDRQILVWCPS  426 (446)
Q Consensus       394 gH------------------~~~v~~~~fS-pd~~~lvtgs~D~~v~vW~~~  426 (446)
                      |.                  -.....|++. +++.++++-...+.|+..+++
T Consensus       381 G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          381 GRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             CCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             eCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            21                  2347899999 788888888788889988765

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.36  E-value=0.085  Score=49.17  Aligned_cols=114  Identities=8%  Similarity=-0.082  Sum_probs=70.5

Q ss_pred             EeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceee
Q 013274          106 ISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ  184 (446)
Q Consensus       106 V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~  184 (446)
                      +..+.+.+.++.++.+-...+.|..++++.......... ......+++.+.  +..++.+-...+.|.+.+++......
T Consensus        75 ~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~--~g~ly~~d~~~~~I~~~~~dG~~~~~  152 (349)
T 3v64_C           75 AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWV--HDKLYWTDSGTSRIEVANLDGAHRKV  152 (349)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETT--TTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             eEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecC--CCeEEEEcCCCCeEEEEcCCCCceEE
Confidence            456677765666666766778999999886543332211 112234444432  34566666667889999987654333


Q ss_pred             eeeCCCCCeEEEEEecCCCeEEEEeeCC-CcEEEEEcc
Q 013274          185 TLSGHRDGIMTVEWSTSSEWILVTGGCD-GAIRFWDIR  221 (446)
Q Consensus       185 ~l~~h~~~v~sv~~s~~~~~~l~S~s~D-g~I~iWd~~  221 (446)
                      .+...-.....++++|.+..++++-... +.|...++.
T Consensus       153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d  190 (349)
T 3v64_C          153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD  190 (349)
T ss_dssp             EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC
Confidence            3333445568899998777766665554 667666654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.29  E-value=0.099  Score=47.57  Aligned_cols=110  Identities=14%  Similarity=0.068  Sum_probs=61.8

Q ss_pred             EEccCCCEEEEeecCCcEEEEecCcCceeeeeeeE-E---E--eecCCCeEEEEcCCCcEEEEeC--CCceEEEEeec-C
Q 013274          316 KVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFET-V---R--LQTSKPIQLATTQDPAVVFVPC--MTAVKAFDIWS-G  386 (446)
Q Consensus       316 ~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~-~---~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~-~  386 (446)
                      ++.+++..+++...++.|.++|..+++........ +   .  .....+.-+  ++++..++++.  ...+..+++.. +
T Consensus       123 ~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g  200 (306)
T 2p4o_A          123 TPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTD  200 (306)
T ss_dssp             EESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTS
T ss_pred             cccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCC
Confidence            34455555565556778888887653211110000 0   0  000112222  56666555543  34677888764 3


Q ss_pred             ce--EEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC
Q 013274          387 KT--CLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH  428 (446)
Q Consensus       387 ~~--~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~  428 (446)
                      +.  ...+. .......+++.+||++.++....+.|.++++++.
T Consensus       201 ~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G~  243 (306)
T 2p4o_A          201 KPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS  243 (306)
T ss_dssp             CBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC
T ss_pred             CCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCCCC
Confidence            32  12221 1245678999999999888888889999998754

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.23  E-value=0.21  Score=50.17  Aligned_cols=59  Identities=10%  Similarity=0.050  Sum_probs=40.5

Q ss_pred             CcEEEEeCCCCceeeeeeCCCC----------CeEEEEEe-cCCC--eEEEEeeCCCcEEEEEccCCceeEEe
Q 013274          170 VQVRLCDIASGAISQTLSGHRD----------GIMTVEWS-TSSE--WILVTGGCDGAIRFWDIRRAGCFRVL  229 (446)
Q Consensus       170 ~~v~vwd~~~~~~~~~l~~h~~----------~v~sv~~s-~~~~--~~l~S~s~Dg~I~iWd~~~~~~~~~~  229 (446)
                      ..|..+|.++|+.+..++....          ++. +... .+++  .+++.++.+|.+...|.++++.+-..
T Consensus       278 ~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~  349 (599)
T 1w6s_A          278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSAN  349 (599)
T ss_dssp             SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecc
Confidence            4799999999998877764221          122 2222 3453  35677889999999999998765543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.12  E-value=0.16  Score=46.65  Aligned_cols=114  Identities=11%  Similarity=-0.032  Sum_probs=66.7

Q ss_pred             EeEEEEeecCCcEEEEEeCCCeEEEEECCCCeee-EEE-ecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCcee
Q 013274          106 ISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVV-MNF-KMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAIS  183 (446)
Q Consensus       106 V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~  183 (446)
                      +.++.|.+.++.++.+-...+.|..++++..... ..+ ..-.....+++.+.  +..++.+-...+.|.+++++.....
T Consensus        37 ~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~--~g~ly~~d~~~~~I~~~~~dG~~~~  114 (318)
T 3sov_A           37 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL--GEKLYWTDSETNRIEVSNLDGSLRK  114 (318)
T ss_dssp             EEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETT--TTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             cEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcC--CCeEEEEECCCCEEEEEECCCCcEE
Confidence            4466777656667777777789999998765321 111 11112233444432  3445666666788999998765433


Q ss_pred             eeeeCCCCCeEEEEEecCCCeEEEEee-CCCcEEEEEcc
Q 013274          184 QTLSGHRDGIMTVEWSTSSEWILVTGG-CDGAIRFWDIR  221 (446)
Q Consensus       184 ~~l~~h~~~v~sv~~s~~~~~~l~S~s-~Dg~I~iWd~~  221 (446)
                      ..+...-.....+++.|.+.+++++-. ..+.|...++.
T Consensus       115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d  153 (318)
T 3sov_A          115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD  153 (318)
T ss_dssp             EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT
T ss_pred             EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC
Confidence            333344455688999987666555542 24556666553

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.11  E-value=0.23  Score=48.34  Aligned_cols=112  Identities=12%  Similarity=0.108  Sum_probs=64.1

Q ss_pred             eEEEEeec-CCcEEEEEeCCCeEEEEECCCCeeeEEEecCC----ceEEeee-------ccCCCCceEEEEeeCCC----
Q 013274          107 SSAIWYPV-DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPG----KVYRTAM-------SPLAASHMLIAAGTEDV----  170 (446)
Q Consensus       107 ~~~~~~~~-~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~----~~~~~~~-------~~~~~~~~~lasgs~d~----  170 (446)
                      ..+.+.|. .+.++++-...+.|++.|++++.+........    ....+++       .+..  ..++++-..++    
T Consensus       142 ~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G--~~lyvad~~~~~~~~  219 (496)
T 3kya_A          142 GRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEA--EYMIVAIDYDGKGDE  219 (496)
T ss_dssp             EEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTT--CEEEEEECCCTTGGG
T ss_pred             CEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCC--CEEEEEeCCCCCccc
Confidence            35566552 34455554545789999998877665444321    2556666       5432  23555544432    


Q ss_pred             --cEEEEeCCC-Ccee-----eeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEcc
Q 013274          171 --QVRLCDIAS-GAIS-----QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR  221 (446)
Q Consensus       171 --~v~vwd~~~-~~~~-----~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~  221 (446)
                        .|.+++... +...     ..+..- .....++++|+++.++++-..++.|..+|+.
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~  277 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLV  277 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred             CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence              366776444 2221     223221 2335677888666677777778889888875

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.97  E-value=0.32  Score=50.54  Aligned_cols=114  Identities=4%  Similarity=-0.111  Sum_probs=67.7

Q ss_pred             EeEEEEeecCCcEEEEEeCCCeEEEEECCCC----eeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC
Q 013274          106 ISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT----RVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG  180 (446)
Q Consensus       106 V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~  180 (446)
                      +..+.+.+.++.++++-...+.|+.+++...    .....+. .......+++...  +..++.+-...+.|.+.+++..
T Consensus       426 ~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~--~~~LY~tD~~~~~I~v~~ldG~  503 (791)
T 3m0c_C          426 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI--HSNIYWTDSVLGTVSVADTKGV  503 (791)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT--TTEEEEEETTTTEEEEEETTSS
T ss_pred             eEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeec--CCcEEEEecCCCeEEEEeCCCC
Confidence            4466666555666667667788999988752    1111111 1122334555433  3456667677889999999865


Q ss_pred             ceeeeeeCCCCCeEEEEEecCCCeEEEEeeCC-CcEEEEEcc
Q 013274          181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCD-GAIRFWDIR  221 (446)
Q Consensus       181 ~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~D-g~I~iWd~~  221 (446)
                      .....+...-.....|++.|.+.++++|-... +.|...++.
T Consensus       504 ~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d  545 (791)
T 3m0c_C          504 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN  545 (791)
T ss_dssp             SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             eEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC
Confidence            54444444445678999999877766664333 567766664

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.93  E-value=0.09  Score=53.67  Aligned_cols=64  Identities=17%  Similarity=0.151  Sum_probs=40.0

Q ss_pred             CceEEEEeeCCC-----------cEEEEeCCCCcee--eeeeC-CCCCeEEEEEecCCCeEEEEee-CCCcEEEEEccCC
Q 013274          159 SHMLIAAGTEDV-----------QVRLCDIASGAIS--QTLSG-HRDGIMTVEWSTSSEWILVTGG-CDGAIRFWDIRRA  223 (446)
Q Consensus       159 ~~~~lasgs~d~-----------~v~vwd~~~~~~~--~~l~~-h~~~v~sv~~s~~~~~~l~S~s-~Dg~I~iWd~~~~  223 (446)
                      +..+++.|+.+.           .+.+||+.+++..  ..+.. +.....++++.++++ +++.|+ .++.+.+||..+.
T Consensus       197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-lyv~GG~~~~~v~~yd~~t~  275 (656)
T 1k3i_A          197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKTSLYDSSSD  275 (656)
T ss_dssp             TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCEEEEEGGGT
T ss_pred             CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCC-EEEeCCCCCCceEEecCcCC
Confidence            345666665432           5889999988632  22322 333344567777776 567777 4567999998754

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=96.92  E-value=0.24  Score=45.29  Aligned_cols=112  Identities=13%  Similarity=0.107  Sum_probs=69.7

Q ss_pred             eEEEEEcc-CCCEEEEeec-----------------CCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEe
Q 013274          312 VTGLKVTE-DGMYLLSAGS-----------------DSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVP  373 (446)
Q Consensus       312 v~~l~fs~-dg~~l~sgs~-----------------D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (446)
                      ...+++.+ +|...++-..                 ++.|..||..+++....     ......+.-+++++++..++++
T Consensus       128 p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~-----~~~~~~p~gia~~~dg~~lyv~  202 (322)
T 2fp8_A          128 LYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLL-----LKELHVPGGAEVSADSSFVLVA  202 (322)
T ss_dssp             EEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEE-----EEEESCCCEEEECTTSSEEEEE
T ss_pred             cceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEe-----ccCCccCcceEECCCCCEEEEE
Confidence            56788899 8887776432                 36788888776542211     1112345567888988766655


Q ss_pred             C--CCceEEEEeecCc--eEEEecccccceEEEEEcCCCCEEEEeeC----------CCcEEEeCCCCCC
Q 013274          374 C--MTAVKAFDIWSGK--TCLTFRGHYEYVNCCCFSSQDQELYTGGN----------DRQILVWCPSRHI  429 (446)
Q Consensus       374 ~--~~~~~~~d~~~~~--~~~~l~gH~~~v~~~~fSpd~~~lvtgs~----------D~~v~vW~~~~~~  429 (446)
                      .  ...+..+++....  ....+....+ ...+++.++|++.++...          .+.|.+++++...
T Consensus       203 d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~  271 (322)
T 2fp8_A          203 EFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNI  271 (322)
T ss_dssp             EGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCE
T ss_pred             eCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCE
Confidence            3  2467777775421  1122221223 788999999998887654          4668888886543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.92  E-value=0.24  Score=45.30  Aligned_cols=114  Identities=4%  Similarity=-0.104  Sum_probs=65.7

Q ss_pred             EeEEEEeecCCcEEEEEeCCCeEEEEECCC----CeeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC
Q 013274          106 ISSAIWYPVDTGLFVTGSYDHYVKVWDTNC----TRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG  180 (446)
Q Consensus       106 V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~  180 (446)
                      +..+.+.+.++.++.+-...+.|..++++.    ......+.. -.....+++.+.  +..++.+-..++.|.+.|++..
T Consensus        32 p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~--~~~ly~~d~~~~~I~~~~~~g~  109 (316)
T 1ijq_A           32 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI--HSNIYWTDSVLGTVSVADTKGV  109 (316)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT--TTEEEEEETTTTEEEEEETTSS
T ss_pred             eEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec--CCeEEEEECCCCEEEEEeCCCC
Confidence            445667655566666767779999999875    221211211 112344554432  3345566566788999998765


Q ss_pred             ceeeeeeCCCCCeEEEEEecCCCeEEEEeeCC-CcEEEEEcc
Q 013274          181 AISQTLSGHRDGIMTVEWSTSSEWILVTGGCD-GAIRFWDIR  221 (446)
Q Consensus       181 ~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~D-g~I~iWd~~  221 (446)
                      .....+...-.....+++.|.+.+++++.... +.|...++.
T Consensus       110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d  151 (316)
T 1ijq_A          110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN  151 (316)
T ss_dssp             SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC
Confidence            44333333445668999998777666665433 566666653

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.91  E-value=0.24  Score=45.28  Aligned_cols=219  Identities=8%  Similarity=-0.026  Sum_probs=124.1

Q ss_pred             CeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCC----CceeeeeeCCCCCeEEEEEecC
Q 013274          126 HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS----GAISQTLSGHRDGIMTVEWSTS  201 (446)
Q Consensus       126 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~----~~~~~~l~~h~~~v~sv~~s~~  201 (446)
                      ..|+..|++................+.+.+.  +..++.+-..++.|+.+|+++    ......+...-.....+++.+.
T Consensus        10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~--~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~   87 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVA--SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI   87 (316)
T ss_dssp             SSEEEEETTSCCCEEEECSCSSEEEEEEETT--TTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred             CeEEEEECCCcceEehhcCCCceEEEEEEeC--CCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec
Confidence            4688888887665544443344556666543  335666666778999999876    2222223323344578888876


Q ss_pred             CCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeeccc
Q 013274          202 SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV  281 (446)
Q Consensus       202 ~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (446)
                      +..++++-...+.|.+.|+........+.                                                   
T Consensus        88 ~~~ly~~d~~~~~I~~~~~~g~~~~~~~~---------------------------------------------------  116 (316)
T 1ijq_A           88 HSNIYWTDSVLGTVSVADTKGVKRKTLFR---------------------------------------------------  116 (316)
T ss_dssp             TTEEEEEETTTTEEEEEETTSSSEEEEEE---------------------------------------------------
T ss_pred             CCeEEEEECCCCEEEEEeCCCCceEEEEE---------------------------------------------------
Confidence            66666776677888888865321100000                                                   


Q ss_pred             ceeecCCccccccCCCcccccccccccccCeEEEEEccCCCE-EEEeecC-CcEEEEecCcCceeeeeeeEEEeecCCCe
Q 013274          282 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMY-LLSAGSD-SRIRLWDVESGRNTLVNFETVRLQTSKPI  359 (446)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~-l~sgs~D-~~i~lWd~~~~~~~~~~~~~~~~~~~~~~  359 (446)
                                               ........++++|.+.+ +++.... +.|...++.......  +.  ......+.
T Consensus       117 -------------------------~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~--~~--~~~~~~P~  167 (316)
T 1ijq_A          117 -------------------------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LV--TENIQWPN  167 (316)
T ss_dssp             -------------------------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE--EE--CSSCSCEE
T ss_pred             -------------------------CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE--EE--ECCCCCce
Confidence                                     00112567888986554 4444333 678888776432111  10  01123456


Q ss_pred             EEEEcCCCcEEEEeCC--CceEEEEeecCceEEEec---ccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC
Q 013274          360 QLATTQDPAVVFVPCM--TAVKAFDIWSGKTCLTFR---GHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH  428 (446)
Q Consensus       360 ~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~l~---gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~  428 (446)
                      -+++.++...++.+..  ..+..+++. +...+.+.   ........+++. ++..+++-...+.|...++..+
T Consensus       168 gla~d~~~~~lY~~D~~~~~I~~~d~d-g~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g  239 (316)
T 1ijq_A          168 GITLDLLSGRLYWVDSKLHSISSIDVN-GGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG  239 (316)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred             EEEEeccCCEEEEEECCCCeEEEEecC-CCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCC
Confidence            6788877666665533  467777764 33333332   223456788885 4666777777788888887533

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.82  E-value=0.31  Score=45.05  Aligned_cols=112  Identities=8%  Similarity=0.215  Sum_probs=64.5

Q ss_pred             EEEEE--ccC-CC-EEEEeecCCcEEEEecCc---CceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEee-
Q 013274          313 TGLKV--TED-GM-YLLSAGSDSRIRLWDVES---GRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIW-  384 (446)
Q Consensus       313 ~~l~f--s~d-g~-~l~sgs~D~~i~lWd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-  384 (446)
                      ..+++  +|. ++ |+.....++.+..|++..   ++........+.+ .+.+--+++.+....++++-.+ +.+|.+. 
T Consensus       131 yGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd-~GIw~~da  208 (355)
T 3amr_A          131 YGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEED-EAIWKFSA  208 (355)
T ss_dssp             CCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETT-TEEEEEEC
T ss_pred             eEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEeccc-ceEEEEeC
Confidence            33555  664 44 677788889999998843   2211111222222 1223334555566777776554 4467664 


Q ss_pred             ------cCceEEEe-cccc-cceEEEEE--cCCCC--EEEEeeCCCcEEEeCCC
Q 013274          385 ------SGKTCLTF-RGHY-EYVNCCCF--SSQDQ--ELYTGGNDRQILVWCPS  426 (446)
Q Consensus       385 ------~~~~~~~l-~gH~-~~v~~~~f--Spd~~--~lvtgs~D~~v~vW~~~  426 (446)
                            +++.+..+ .+|- ..+..|++  .++++  +|+|+-.+.+.-||+..
T Consensus       209 ~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          209 EPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             STTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             CcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence                  23344443 2333 37888988  56666  45566578899999885

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.81  E-value=0.5  Score=47.35  Aligned_cols=79  Identities=20%  Similarity=0.161  Sum_probs=47.0

Q ss_pred             cCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccce-EEEEEcC
Q 013274          329 SDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYV-NCCCFSS  406 (446)
Q Consensus       329 ~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v-~~~~fSp  406 (446)
                      .++.|.-||+.+++..-.. .   ............ .+.++|.++. ..++.+|..+|+.+-.++...+.. .-+.+..
T Consensus       464 ~~G~l~A~D~~tG~~~W~~-~---~~~~~~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~  538 (582)
T 1flg_A          464 HVGSLRAMDPVSGKVVWEH-K---EHLPLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQ  538 (582)
T ss_dssp             CSEEEEEECTTTCCEEEEE-E---ESSCCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred             CcceEEEEECCCCCEEEEe-c---CCCCCcccceEe-CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEE
Confidence            3688999999998643211 1   111110001112 2455666544 578999999999988776554332 3467778


Q ss_pred             CCCEEE
Q 013274          407 QDQELY  412 (446)
Q Consensus       407 d~~~lv  412 (446)
                      ||+..+
T Consensus       539 ~G~qYv  544 (582)
T 1flg_A          539 DGEQYL  544 (582)
T ss_dssp             TTEEEE
T ss_pred             CCEEEE
Confidence            887544

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=96.72  E-value=0.067  Score=55.60  Aligned_cols=119  Identities=9%  Similarity=0.046  Sum_probs=66.5

Q ss_pred             cCccc-cEeEEEEeecCCcEEE-EEeCC----CeEEEEECCCC-eeeEEEecCCceEEeeeccCCCCceEEEEeeCC---
Q 013274          100 HGHKY-AISSAIWYPVDTGLFV-TGSYD----HYVKVWDTNCT-RVVMNFKMPGKVYRTAMSPLAASHMLIAAGTED---  169 (446)
Q Consensus       100 ~gh~~-~V~~~~~~~~~~~~l~-s~s~D----~~i~iWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d---  169 (446)
                      .+|.. .+....++|+|+++|| +.+.+    .+|+++|++++ +.+.. ..........+++++   ..|+....|   
T Consensus       169 ~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~~~~~~~~WspDg---~~l~y~~~d~~~  244 (751)
T 2xe4_A          169 EGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVSGTNGEIVWGPDH---TSLFYVTKDETL  244 (751)
T ss_dssp             TTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEEEECSCCEECSST---TEEEEEEECTTC
T ss_pred             cCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cccCceeeEEEecCC---CEEEEEEECCCC
Confidence            34553 5666777723787776 33333    35999999988 63211 011111234566643   234433433   


Q ss_pred             --CcEEEEeCCCCce--eeeee-CCCCCeEEEEEecCCCeEEEEeeCC--CcEEEEEccC
Q 013274          170 --VQVRLCDIASGAI--SQTLS-GHRDGIMTVEWSTSSEWILVTGGCD--GAIRFWDIRR  222 (446)
Q Consensus       170 --~~v~vwd~~~~~~--~~~l~-~h~~~v~sv~~s~~~~~~l~S~s~D--g~I~iWd~~~  222 (446)
                        ..|+++++.++..  ...+. .+.....++.|+|++++++++....  ..|.++|+.+
T Consensus       245 ~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~  304 (751)
T 2xe4_A          245 RENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK  304 (751)
T ss_dssp             CEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred             CCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence              3688899987642  22222 2334567889999999876665432  3455566543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.66  E-value=0.78  Score=47.67  Aligned_cols=286  Identities=10%  Similarity=0.048  Sum_probs=147.4

Q ss_pred             cceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEe
Q 013274           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS  123 (446)
Q Consensus        44 ~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s  123 (446)
                      ..|.+|..+. ++.+.+ |..+ .+.+||..++....    +      .........-....|.++...+ ++ .+..|.
T Consensus       211 ~~i~~i~~d~-~g~lwi-gt~~-Gl~~~d~~~~~~~~----~------~~~~~~~~~l~~~~i~~i~~d~-~g-~lWigt  275 (781)
T 3v9f_A          211 NDVRCIYKDT-NGNIWI-GTSK-GLALFNANTETFTN----F------HNNPGNIHGALSSYIFSIKQLK-DN-KLWIAT  275 (781)
T ss_dssp             SSEEEEEECT-TCCEEE-EETT-EEEEEETTTTEEEC---------------------CCCCEEEEEECT-TS-EEEEEE
T ss_pred             CceeEEEEcC-CCCEEE-EeCC-cHheECCCCCcEEE----E------EcCCCccccccCceEEEEEECC-CC-CEEEEe
Confidence            4588888864 455444 4444 68889976543110    0      0000000001123466655432 44 555666


Q ss_pred             CCCeEEEEECCCCeeeEEEe--------------c-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeee-
Q 013274          124 YDHYVKVWDTNCTRVVMNFK--------------M-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS-  187 (446)
Q Consensus       124 ~D~~i~iWd~~~~~~~~~~~--------------~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~-  187 (446)
                      ..+-|.++|..+........              + ...+.++....  .+.  |-.|+.++-|..++..++....... 
T Consensus       276 ~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~--~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~  351 (781)
T 3v9f_A          276 ELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDS--FNN--IWIGTWGGGINFISNAPPTFHTWSYS  351 (781)
T ss_dssp             SSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECS--SCC--EEEEEBSSCEEEECSSCCSCEEEC--
T ss_pred             CCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeC--CCC--EEEEecCCeEEEeCCCCCcceeeccC
Confidence            65668889987655322111              1 11233333222  222  3445556678888887664322110 


Q ss_pred             --------CCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCC
Q 013274          188 --------GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNS  259 (446)
Q Consensus       188 --------~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (446)
                              -....|.++...+++.  |..|+.++-+..||..++.. ..+   ..                         
T Consensus       352 ~~~~~~~~l~~~~v~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~~-~~~---~~-------------------------  400 (781)
T 3v9f_A          352 PTQMNESSLSNKVVSSVCDDGQGK--LWIGTDGGGINVFENGKRVA-IYN---KE-------------------------  400 (781)
T ss_dssp             --CCCSSCCSSSCEEEEEECTTSC--EEEEEBSSCEEEEETTEEEE-ECC------------------------------
T ss_pred             ccccccCCCCCcceEEEEEcCCCC--EEEEeCCCcEEEEECCCCeE-EEc---cC-------------------------
Confidence                    0235689998877765  34566566688888653211 000   00                         


Q ss_pred             CcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecC
Q 013274          260 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVE  339 (446)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~  339 (446)
                                                          .        .......|.++...++|.+.+ |+.++-|..+|..
T Consensus       401 ------------------------------------~--------~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~  435 (781)
T 3v9f_A          401 ------------------------------------N--------RELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTR  435 (781)
T ss_dssp             -----------------------------------------------CCCSBEEEEEECTTSCEEE-EETTEEEEEECSS
T ss_pred             ------------------------------------C--------CCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCC
Confidence                                                0        000123488888888887665 6666668899887


Q ss_pred             cCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEeccc-----ccceEEEEEcCCCCEEEEe
Q 013274          340 SGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGH-----YEYVNCCCFSSQDQELYTG  414 (446)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH-----~~~v~~~~fSpd~~~lvtg  414 (446)
                      +++...  +............+...+++. +.+++...+..++..+++........     ...|.++...++|++.+..
T Consensus       436 ~~~~~~--~~~~~~~~~~v~~i~~d~~g~-lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt  512 (781)
T 3v9f_A          436 LKKFQI--IELEKNELLDVRVFYEDKNKK-IWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT  512 (781)
T ss_dssp             SCEEEE--CCSTTTCCCCEEEEEECTTSE-EEEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE
T ss_pred             CCcEEE--eccCCCCCCeEEEEEECCCCC-EEEEECCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEE
Confidence            654211  110000011222333444444 44444467778887665543322222     4679999999999877654


Q ss_pred             eCCCcEEEeCCCCC
Q 013274          415 GNDRQILVWCPSRH  428 (446)
Q Consensus       415 s~D~~v~vW~~~~~  428 (446)
                      . ++-|..+++.+.
T Consensus       513 ~-~~Gl~~~~~~~~  525 (781)
T 3v9f_A          513 F-GGGVGIYTPDMQ  525 (781)
T ss_dssp             S-SSCEEEECTTCC
T ss_pred             c-CCCEEEEeCCCC
Confidence            3 334667887654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.65  E-value=0.0052  Score=63.30  Aligned_cols=92  Identities=16%  Similarity=0.130  Sum_probs=51.0

Q ss_pred             eEEEEEccCC-CEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeC--CCceEEEEeecCce
Q 013274          312 VTGLKVTEDG-MYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC--MTAVKAFDIWSGKT  388 (446)
Q Consensus       312 v~~l~fs~dg-~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~  388 (446)
                      .+.|+|+|++ .++++-+..++|..+|+........ +. .......+..+++..+  .+++..  ...|..++..+++.
T Consensus       542 PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~-~~-~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~~  617 (699)
T 1n7d_A          542 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI-LE-DEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSD  617 (699)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEE-CC-CSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEEE
T ss_pred             ccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEE-Ee-cCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCCc
Confidence            4568899874 5556667778899999865322111 11 0011123333444333  444443  34677777777877


Q ss_pred             EEEecccccceEEEEEcCC
Q 013274          389 CLTFRGHYEYVNCCCFSSQ  407 (446)
Q Consensus       389 ~~~l~gH~~~v~~~~fSpd  407 (446)
                      +..+......++.|++.++
T Consensus       618 ~~~i~~~~~~P~~i~v~~~  636 (699)
T 1n7d_A          618 VNLLAENLLSPEDMVLFHQ  636 (699)
T ss_dssp             EECCCTTCSSCCCCCBCSS
T ss_pred             eEEeecCCCCCcEEEEeCc
Confidence            7766554445566655544

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=96.58  E-value=0.29  Score=50.78  Aligned_cols=144  Identities=10%  Similarity=0.074  Sum_probs=78.4

Q ss_pred             ceeEEEee-cCCCCEEEEe-eCCC----cEEEEEcccC-cCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274           45 SINSLQVD-LTEERYLLSG-ASDS----SVAVYDVQRA-TDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (446)
Q Consensus        45 ~v~~l~~s-~~~~~~l~s~-s~Dg----~i~lWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~  117 (446)
                      .+...+|| | +|++||-+ +.+|    +|+++|++++ ....  ..+                 ......+.|+| |++
T Consensus       175 ~~~~~~~S~P-DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~--~~~-----------------~~~~~~~~Wsp-Dg~  233 (751)
T 2xe4_A          175 DVMEVKPAPP-EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA--DKV-----------------SGTNGEIVWGP-DHT  233 (751)
T ss_dssp             EEEEEEECTT-TTCEEEEEEESSSSSCEEEEEEETTCTTCCCC--CCE-----------------EEECSCCEECS-STT
T ss_pred             EEeeeEecCC-CCCEEEEEEeCCCCceEEEEEEECCCCCEeCC--ccc-----------------cCceeeEEEec-CCC
Confidence            67788999 7 56766644 3233    5999999876 4211  000                 00112456776 666


Q ss_pred             EEEEEeCC-----CeEEEEECCCCee--eEEEecC--CceEEeeeccCCCCceEEEEee--CCCcEEEEeCCCCc-ee--
Q 013274          118 LFVTGSYD-----HYVKVWDTNCTRV--VMNFKMP--GKVYRTAMSPLAASHMLIAAGT--EDVQVRLCDIASGA-IS--  183 (446)
Q Consensus       118 ~l~s~s~D-----~~i~iWd~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~lasgs--~d~~v~vwd~~~~~-~~--  183 (446)
                      .|+-...|     ..|.++++.+++.  ...+...  .......++++..  .++++..  ....|+++|+.++. ..  
T Consensus       234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~--~l~~~~~~~~~~~l~~~d~~~~~~~~~~  311 (751)
T 2xe4_A          234 SLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTN--TLCIGSQSPETAEVHLLDLRKGNAHNTL  311 (751)
T ss_dssp             EEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSS--EEEEEEECSSCEEEEEEESSSCTTCCCE
T ss_pred             EEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCC--EEEEEecCCCCceEEEEECCCCCCCcee
Confidence            66655554     3688888877642  2222222  2234556776532  2333332  34578889998762 22  


Q ss_pred             eee-eCCCCCeEEEEEecCCCeEEEEeeCC
Q 013274          184 QTL-SGHRDGIMTVEWSTSSEWILVTGGCD  212 (446)
Q Consensus       184 ~~l-~~h~~~v~sv~~s~~~~~~l~S~s~D  212 (446)
                      ..+ .+..+...++.|.. ++.+++.+..+
T Consensus       312 ~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~  340 (751)
T 2xe4_A          312 EIVRPREKGVRYDVQMHG-TSHLVILTNEG  340 (751)
T ss_dssp             EESSCCCTTCCEEEEEET-TTEEEEEECTT
T ss_pred             EEeecCCCCceEEEeeee-CCEEEEEeCCC
Confidence            333 34455566666554 45555555544

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.49  E-value=0.61  Score=44.23  Aligned_cols=220  Identities=8%  Similarity=-0.008  Sum_probs=119.6

Q ss_pred             cEeEEEEeecCCcEEEEEeCCCeEEEEECCCCe----eeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCC
Q 013274          105 AISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR----VVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS  179 (446)
Q Consensus       105 ~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~  179 (446)
                      .+..+.+.+.++.++.+-...+.|+.++++...    ...... .......+++...  +..++.+-...+.|.+.|++.
T Consensus       113 ~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~--~~~lY~~d~~~~~I~~~~~~g  190 (400)
T 3p5b_L          113 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI--HSNIYWTDSVLGTVSVADTKG  190 (400)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETT--TTEEEEEETTTTEEEEECTTT
T ss_pred             cceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEec--CCceEEEECCCCeEEEEeCCC
Confidence            455677776566666666677889999987521    122111 1123344555432  345666666778899999887


Q ss_pred             CceeeeeeCCCCCeEEEEEecCCCeEEEEeeC-CCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCC
Q 013274          180 GAISQTLSGHRDGIMTVEWSTSSEWILVTGGC-DGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQN  258 (446)
Q Consensus       180 ~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~-Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (446)
                      ......+...-.....|++.|.+.++++|-.. .+.|...++........+                             
T Consensus       191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~-----------------------------  241 (400)
T 3p5b_L          191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV-----------------------------  241 (400)
T ss_dssp             CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE-----------------------------
T ss_pred             CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE-----------------------------
Confidence            65544444444557899999877766665432 356666665421100000                             


Q ss_pred             CCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEE-EEeecCCcEEEEe
Q 013274          259 SSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL-LSAGSDSRIRLWD  337 (446)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l-~sgs~D~~i~lWd  337 (446)
                                                                     .......+.|++++++..| ++-+...+|...|
T Consensus       242 -----------------------------------------------~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d  274 (400)
T 3p5b_L          242 -----------------------------------------------TENIQWPNGITLDLLSGRLYWVDSKLHSISSID  274 (400)
T ss_dssp             -----------------------------------------------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             -----------------------------------------------ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEe
Confidence                                                           0001235779999766544 5556678899999


Q ss_pred             cCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEe-CCCceEEEEeecCceEEEecccccceEEEEEc
Q 013274          338 VESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVP-CMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFS  405 (446)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fS  405 (446)
                      +........ . ........+..++.. ...++++. ....+..++..+++....+........++++.
T Consensus       275 ~dG~~~~~~-~-~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v~  340 (400)
T 3p5b_L          275 VNGGNRKTI-L-EDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLF  340 (400)
T ss_dssp             TTSCCCEEE-E-ECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEEEE
T ss_pred             CCCCccEEE-E-eCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEEEE
Confidence            875432111 1 100112234444442 23333333 23467777777787766666555555555443

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.39  E-value=0.57  Score=42.86  Aligned_cols=221  Identities=7%  Similarity=0.024  Sum_probs=120.8

Q ss_pred             CCeEEEEECCCCeeeEEEecC--CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCcee-eeeeCCCCCeEEEEEecC
Q 013274          125 DHYVKVWDTNCTRVVMNFKMP--GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAIS-QTLSGHRDGIMTVEWSTS  201 (446)
Q Consensus       125 D~~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~-~~l~~h~~~v~sv~~s~~  201 (446)
                      ...|+..|++...........  .....+.+.+  .+..++.+-...+.|+.++++.+... ..+...-.....+++.+.
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~--~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~   89 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVF--SHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL   89 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEG--GGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETT
T ss_pred             cCeEEEEECCCCceEEEEEecCCCccEEEEEEe--CCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcC
Confidence            357888888765311111111  1233344443  23456666666788888988776422 222222234567888876


Q ss_pred             CCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeeccc
Q 013274          202 SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV  281 (446)
Q Consensus       202 ~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (446)
                      +..++++-...+.|.+.++..... +.+-                                                   
T Consensus        90 ~g~ly~~d~~~~~I~~~~~dG~~~-~~l~---------------------------------------------------  117 (318)
T 3sov_A           90 GEKLYWTDSETNRIEVSNLDGSLR-KVLF---------------------------------------------------  117 (318)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSC-EEEE---------------------------------------------------
T ss_pred             CCeEEEEECCCCEEEEEECCCCcE-EEEE---------------------------------------------------
Confidence            666667766677888888653210 0000                                                   


Q ss_pred             ceeecCCccccccCCCcccccccccccccCeEEEEEccCCCE-EEEe-ecCCcEEEEecCcCceeeeeeeEEEeecCCCe
Q 013274          282 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMY-LLSA-GSDSRIRLWDVESGRNTLVNFETVRLQTSKPI  359 (446)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~-l~sg-s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~  359 (446)
                                              .........+++.|.+.+ +.+- +..+.|...++........ .   ......+.
T Consensus       118 ------------------------~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~-~---~~~l~~Pn  169 (318)
T 3sov_A          118 ------------------------WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII-I---NSEIYWPN  169 (318)
T ss_dssp             ------------------------CSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEE-E---CSSCSCEE
T ss_pred             ------------------------eCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEE-E---ECCCCCcc
Confidence                                    000122467888876444 4443 2356777777764221111 1   01123456


Q ss_pred             EEEEcCCCcEEEEeCC--CceEEEEeecCceEEE-ecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCC
Q 013274          360 QLATTQDPAVVFVPCM--TAVKAFDIWSGKTCLT-FRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI  429 (446)
Q Consensus       360 ~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~-l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~  429 (446)
                      -+++.++...++.+..  ..+..+++. +...+. +.+.......+++. .+..+++-...+.|...++.++.
T Consensus       170 glavd~~~~~lY~aD~~~~~I~~~d~d-G~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~  240 (318)
T 3sov_A          170 GLTLDYEEQKLYWADAKLNFIHKSNLD-GTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGE  240 (318)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred             EEEEeccCCEEEEEECCCCEEEEEcCC-CCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCC
Confidence            6888876666665533  456677764 333232 33345667788885 34566676677888888885443

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.23  E-value=0.035  Score=57.13  Aligned_cols=96  Identities=9%  Similarity=-0.014  Sum_probs=50.2

Q ss_pred             CCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCC----CceeeeeeCCCCCeEEEEEec
Q 013274          125 DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS----GAISQTLSGHRDGIMTVEWST  200 (446)
Q Consensus       125 D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~----~~~~~~l~~h~~~v~sv~~s~  200 (446)
                      .+.|+..++.................+++.+.  ...++.+-...+.|+.+++++    ......+.........|++.+
T Consensus       385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~--~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~  462 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVA--SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW  462 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCCCTTCCCCEEETT--TTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred             ccceEEEeCCCCcceeeeccCcceEEEccccc--cCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence            35777778776554333222223334444432  234555545567899998875    222222222222345667765


Q ss_pred             CCCeEEEEeeCCCcEEEEEccC
Q 013274          201 SSEWILVTGGCDGAIRFWDIRR  222 (446)
Q Consensus       201 ~~~~~l~S~s~Dg~I~iWd~~~  222 (446)
                      .+..++++-...+.|.+.++..
T Consensus       463 ~~g~LY~tD~~~~~I~v~d~dg  484 (699)
T 1n7d_A          463 IHSNIYWTDSVLGTVSVADTKG  484 (699)
T ss_dssp             SSSBCEECCTTTSCEEEEBSSS
T ss_pred             eCCcEEEEeccCCeEEEEecCC
Confidence            5555556655667788777653

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.21  E-value=0.86  Score=43.16  Aligned_cols=220  Identities=8%  Similarity=-0.020  Sum_probs=124.4

Q ss_pred             CCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC----ceeeeeeCCCCCeEEEEEec
Q 013274          125 DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG----AISQTLSGHRDGIMTVEWST  200 (446)
Q Consensus       125 D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~----~~~~~l~~h~~~v~sv~~s~  200 (446)
                      ...|+.-++.................+++.+.  +..++.+-...+.|+.++++..    .....+.........+++.+
T Consensus        91 ~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~--~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~  168 (400)
T 3p5b_L           91 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVA--SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW  168 (400)
T ss_dssp             TTEEEEECTTSCSCEEEECSCSCEEEEEEETT--TTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEET
T ss_pred             cceeEEEccCCcceeEeccccCcceEEeeeec--cCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEe
Confidence            46889889887654444443445556666543  3345666566778888888752    22233333445567888887


Q ss_pred             CCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecc
Q 013274          201 SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSS  280 (446)
Q Consensus       201 ~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (446)
                      .+..++++-...+.|.+.|+........+.                                                  
T Consensus       169 ~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~--------------------------------------------------  198 (400)
T 3p5b_L          169 IHSNIYWTDSVLGTVSVADTKGVKRKTLFR--------------------------------------------------  198 (400)
T ss_dssp             TTTEEEEEETTTTEEEEECTTTCSEEEEEE--------------------------------------------------
T ss_pred             cCCceEEEECCCCeEEEEeCCCCceEEEEe--------------------------------------------------
Confidence            556666776667778877765321100000                                                  


Q ss_pred             cceeecCCccccccCCCcccccccccccccCeEEEEEccCCCE-EEEeec-CCcEEEEecCcCceeeeeeeEEEeecCCC
Q 013274          281 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMY-LLSAGS-DSRIRLWDVESGRNTLVNFETVRLQTSKP  358 (446)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~-l~sgs~-D~~i~lWd~~~~~~~~~~~~~~~~~~~~~  358 (446)
                                                ........|+++|.+.+ +.|-.. .+.|...++........ .   ......+
T Consensus       199 --------------------------~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~-~---~~~l~~P  248 (400)
T 3p5b_L          199 --------------------------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL-V---TENIQWP  248 (400)
T ss_dssp             --------------------------CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEE-E---CSSCSCE
T ss_pred             --------------------------CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEE-E---ECCCCce
Confidence                                      00112577889885544 444422 36788888765322111 1   1112345


Q ss_pred             eEEEEcCCCcEEEEeCC--CceEEEEeecCceEEEe-c--ccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC
Q 013274          359 IQLATTQDPAVVFVPCM--TAVKAFDIWSGKTCLTF-R--GHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH  428 (446)
Q Consensus       359 ~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~l-~--gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~  428 (446)
                      .-+++.++...++++..  ..+..+++. +....++ .  +.......|++ ..+..+++-...+.|..++..++
T Consensus       249 ~glavd~~~~~lY~aD~~~~~I~~~d~d-G~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V~~~~~~~G  321 (400)
T 3p5b_L          249 NGITLDLLSGRLYWVDSKLHSISSIDVN-GGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANRLTG  321 (400)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETT-SCCCEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSEEEEESSSC
T ss_pred             EEEEEEeCCCEEEEEECCCCEEEEEeCC-CCccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeEEEEEcCCC
Confidence            66888877766666533  456777764 3333333 2  23455677777 34556667777788888885444

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.06  E-value=1.7  Score=45.16  Aligned_cols=219  Identities=9%  Similarity=-0.030  Sum_probs=119.7

Q ss_pred             CCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC----ceeeeeeCCCCCeEEEEEe
Q 013274          124 YDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG----AISQTLSGHRDGIMTVEWS  199 (446)
Q Consensus       124 ~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~----~~~~~l~~h~~~v~sv~~s  199 (446)
                      ....|+..++.................+++...  ...++.+-...+.|+.++++..    .....+...-.....|++.
T Consensus       402 n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~--~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD  479 (791)
T 3m0c_C          402 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVA--SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD  479 (791)
T ss_dssp             CBSSEEEECTTSCCCEEEECSCSSEEEEEEETT--TTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred             cccceeEeeccCCcceeeecCCCceEEEeeccc--CCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeee
Confidence            345688888876554433333344555555542  3356666666778888888753    2233333344556788888


Q ss_pred             cCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeec
Q 013274          200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQS  279 (446)
Q Consensus       200 ~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (446)
                      +.++.++++-...+.|.+.++..... +.+-                                                 
T Consensus       480 ~~~~~LY~tD~~~~~I~v~~ldG~~~-~~l~-------------------------------------------------  509 (791)
T 3m0c_C          480 WIHSNIYWTDSVLGTVSVADTKGVKR-KTLF-------------------------------------------------  509 (791)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSSSE-EEEE-------------------------------------------------
T ss_pred             ecCCcEEEEecCCCeEEEEeCCCCeE-EEEE-------------------------------------------------
Confidence            77777777877778888888753211 1100                                                 


Q ss_pred             ccceeecCCccccccCCCcccccccccccccCeEEEEEccCCC-EEEEeecC-CcEEEEecCcCceeeeeeeEEEeecCC
Q 013274          280 SVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGM-YLLSAGSD-SRIRLWDVESGRNTLVNFETVRLQTSK  357 (446)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~sgs~D-~~i~lWd~~~~~~~~~~~~~~~~~~~~  357 (446)
                                                .........|+++|.+. +++|-... .+|...++...... ..+   ......
T Consensus       510 --------------------------~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~-~lv---~~~l~~  559 (791)
T 3m0c_C          510 --------------------------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLV---TENIQW  559 (791)
T ss_dssp             --------------------------ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE-EEE---CSSCSC
T ss_pred             --------------------------eCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE-EEE---eCCCCC
Confidence                                      00012267788988744 44444333 67888887653221 111   111234


Q ss_pred             CeEEEEcCCCcEEEEeCC--CceEEEEeecCceEEEe-cc--cccceEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274          358 PIQLATTQDPAVVFVPCM--TAVKAFDIWSGKTCLTF-RG--HYEYVNCCCFSSQDQELYTGGNDRQILVWCPS  426 (446)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~l-~g--H~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~  426 (446)
                      +.-+++.+....++++..  ..|..+++. |.....+ .+  .......|++.. +++++|-...+.|...+..
T Consensus       560 P~GLavD~~~~~LYwaD~~~~~I~~~d~d-G~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~  631 (791)
T 3m0c_C          560 PNGITLDLLSGRLYWVDSKLHSISSIDVN-GGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRL  631 (791)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETT
T ss_pred             ceEEEEecCCCeEEEEeCCCCcEEEEecC-CCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCC
Confidence            666788866666666533  356666663 3333333 22  233456666643 3455566666777766643

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.05  E-value=1.5  Score=44.35  Aligned_cols=220  Identities=7%  Similarity=-0.011  Sum_probs=128.2

Q ss_pred             CCCeEEEEECCCCeeeEEEecCC--ceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecC
Q 013274          124 YDHYVKVWDTNCTRVVMNFKMPG--KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTS  201 (446)
Q Consensus       124 ~D~~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~  201 (446)
                      ....|+.-|+++..........+  ....+++.+.  +..++.+-..++.|+.++++.......+.........+++.+.
T Consensus        13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~--~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~   90 (628)
T 4a0p_A           13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVT--DNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWL   90 (628)
T ss_dssp             ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETT--TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETT
T ss_pred             eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECC--CCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeC
Confidence            34678888887655433333332  3455666543  3456666667788998988765443333332345667888876


Q ss_pred             CCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeeccc
Q 013274          202 SEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV  281 (446)
Q Consensus       202 ~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (446)
                      ++.++++-...+.|.+.++..... +.+-                                                   
T Consensus        91 ~~~LY~tD~~~~~I~v~~~dG~~~-~~l~---------------------------------------------------  118 (628)
T 4a0p_A           91 GKNLYWADTGTNRIEVSKLDGQHR-QVLV---------------------------------------------------  118 (628)
T ss_dssp             TTEEEEEETTTTEEEEEETTSTTC-EEEE---------------------------------------------------
T ss_pred             CCEEEEEECCCCEEEEEecCCCcE-EEEE---------------------------------------------------
Confidence            666667766677788777653210 0000                                                   


Q ss_pred             ceeecCCccccccCCCcccccccccccccCeEEEEEccC-CCEEEEe-ecCCcEEEEecCcCceeeeeeeEEEeecCCCe
Q 013274          282 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED-GMYLLSA-GSDSRIRLWDVESGRNTLVNFETVRLQTSKPI  359 (446)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~d-g~~l~sg-s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~  359 (446)
                           .                   ........|++.|. |.++.|- +...+|...++....... .+    .....+.
T Consensus       119 -----~-------------------~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~-l~----~~~~~P~  169 (628)
T 4a0p_A          119 -----W-------------------KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTT-LV----PNVGRAN  169 (628)
T ss_dssp             -----C-------------------SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE-EE----CSCSSEE
T ss_pred             -----e-------------------CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEE-EE----CCCCCcc
Confidence                 0                   00112577889884 5545554 235677777776533211 11    1234566


Q ss_pred             EEEEcCCCcEEEEeCC--CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC
Q 013274          360 QLATTQDPAVVFVPCM--TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH  428 (446)
Q Consensus       360 ~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~  428 (446)
                      -+++.++...++++..  ..+..+++..... ..+.........+++.. +...+|-...+.|...+..++
T Consensus       170 GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg  238 (628)
T 4a0p_A          170 GLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSG  238 (628)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred             eEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCC
Confidence            7888887666666533  4566677643322 44555556677888865 566667766788888876544

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.04  E-value=0.37  Score=46.29  Aligned_cols=112  Identities=11%  Similarity=0.041  Sum_probs=63.2

Q ss_pred             eEEEEEccCCCE-EEEeecCC----cEEEEecCcCceeeeeeeEEEeecCCCeEEEEcC-CCcEEEEeC-CCceEEEEee
Q 013274          312 VTGLKVTEDGMY-LLSAGSDS----RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQ-DPAVVFVPC-MTAVKAFDIW  384 (446)
Q Consensus       312 v~~l~fs~dg~~-l~sgs~D~----~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~d~~  384 (446)
                      ...|+|+++|++ +++...++    .+.+.+. .+.....  ..+. ....+..+++.+ ++.+++... ...+..++..
T Consensus       181 P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~--~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~  256 (430)
T 3tc9_A          181 VRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVI--TELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFT  256 (430)
T ss_dssp             EEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSE--EEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETT
T ss_pred             cceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeee--eeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence            678999999994 45444332    2333332 2221100  0111 234556677888 555554443 3466677765


Q ss_pred             cCceEEEec-ccccceEEEEEcCCCC-EEEEeeCCCcEEEeCCCC
Q 013274          385 SGKTCLTFR-GHYEYVNCCCFSSQDQ-ELYTGGNDRQILVWCPSR  427 (446)
Q Consensus       385 ~~~~~~~l~-gH~~~v~~~~fSpd~~-~lvtgs~D~~v~vW~~~~  427 (446)
                      .+.....+. +-......++|+|+++ ++++-...+.|.+++++.
T Consensus       257 ~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          257 TQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             TTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             CCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence            544322111 1124578999999999 556666788899987663

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.00  E-value=1.8  Score=44.90  Aligned_cols=291  Identities=9%  Similarity=0.023  Sum_probs=151.8

Q ss_pred             cceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEE-eccccccCccccEeEEEEeecCCcEEEEE
Q 013274           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFV-VDKQHEHGHKYAISSAIWYPVDTGLFVTG  122 (446)
Q Consensus        44 ~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~gh~~~V~~~~~~~~~~~~l~s~  122 (446)
                      ..|++|..+. ++. |..|...+-|.++|.++.....    +....-... .......-....|.++..-+ ++ .|-.|
T Consensus       258 ~~i~~i~~d~-~g~-lWigt~~~Gl~~~~~~~~~~~~----~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~-~g-~lWig  329 (781)
T 3v9f_A          258 SYIFSIKQLK-DNK-LWIATELNGIMILDLQQNQFLL----PEQIRFEFIREGDNNYSLSNASARYIFQDS-FN-NIWIG  329 (781)
T ss_dssp             CCEEEEEECT-TSE-EEEEESSSCEEEEETTCC-------------CEEECBCSSTTSBSSSCEEEEEECS-SC-CEEEE
T ss_pred             ceEEEEEECC-CCC-EEEEeCCCCeEEECCCCCeeee----eeccccccccCCCCCCCCCCCeEEEEEEeC-CC-CEEEE
Confidence            4688888864 454 5566665678889876543210    000000000 00000011234576655433 34 46667


Q ss_pred             eCCCeEEEEECCCCeeeEEEec-----------CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeee---eC
Q 013274          123 SYDHYVKVWDTNCTRVVMNFKM-----------PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL---SG  188 (446)
Q Consensus       123 s~D~~i~iWd~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l---~~  188 (446)
                      ..++-|..++........ +..           ...+.++....  .+.  |-.|+.++-|..+|..++......   ..
T Consensus       330 t~~~Gl~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~v~~i~~d~--~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~~~  404 (781)
T 3v9f_A          330 TWGGGINFISNAPPTFHT-WSYSPTQMNESSLSNKVVSSVCDDG--QGK--LWIGTDGGGINVFENGKRVAIYNKENREL  404 (781)
T ss_dssp             EBSSCEEEECSSCCSCEE-EC----CCCSSCCSSSCEEEEEECT--TSC--EEEEEBSSCEEEEETTEEEEECC-----C
T ss_pred             ecCCeEEEeCCCCCccee-eccCccccccCCCCCcceEEEEEcC--CCC--EEEEeCCCcEEEEECCCCeEEEccCCCCC
Confidence            777789999877554322 211           12244443332  222  344555566888998765432211   12


Q ss_pred             CCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccc
Q 013274          189 HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQK  268 (446)
Q Consensus       189 h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (446)
                      ....|.++...+++. + ..|+.++-+..+|.+++.. ..+..                                     
T Consensus       405 ~~~~v~~i~~d~~g~-l-Wigt~~~Gl~~~~~~~~~~-~~~~~-------------------------------------  444 (781)
T 3v9f_A          405 LSNSVLCSLKDSEGN-L-WFGTYLGNISYYNTRLKKF-QIIEL-------------------------------------  444 (781)
T ss_dssp             CCSBEEEEEECTTSC-E-EEEETTEEEEEECSSSCEE-EECCS-------------------------------------
T ss_pred             CCcceEEEEECCCCC-E-EEEeccCCEEEEcCCCCcE-EEecc-------------------------------------
Confidence            346788888876665 3 4466666788888655421 11000                                     


Q ss_pred             cccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeee
Q 013274          269 RSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNF  348 (446)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~  348 (446)
                                                 .         ......|.++...++|...+ |+. +-|..+|..+++...  +
T Consensus       445 ---------------------------~---------~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~--~  484 (781)
T 3v9f_A          445 ---------------------------E---------KNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIH--H  484 (781)
T ss_dssp             ---------------------------T---------TTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCE--E
T ss_pred             ---------------------------C---------CCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEe--c
Confidence                                       0         00123488888888887655 444 458889987754221  1


Q ss_pred             eEEE---eecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecc----cccceEEEEEcCCCCEEEEeeCCCcEE
Q 013274          349 ETVR---LQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRG----HYEYVNCCCFSSQDQELYTGGNDRQIL  421 (446)
Q Consensus       349 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~g----H~~~v~~~~fSpd~~~lvtgs~D~~v~  421 (446)
                      ....   ........+...+++.+.+......+..++..+++. ..+..    ....|.++...++|++.++.. +|.|.
T Consensus       485 ~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~  562 (781)
T 3v9f_A          485 YDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLV-RKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVC  562 (781)
T ss_dssp             ECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEE-EEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEE
T ss_pred             ccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeE-EEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceE
Confidence            1000   001122334455556555544435666666544432 33321    245789999999998776554 66658


Q ss_pred             EeCCCCCC
Q 013274          422 VWCPSRHI  429 (446)
Q Consensus       422 vW~~~~~~  429 (446)
                      .|++.+..
T Consensus       563 ~~d~~~~~  570 (781)
T 3v9f_A          563 FPSARNFD  570 (781)
T ss_dssp             ESCTTTCC
T ss_pred             EECCCCCc
Confidence            88887654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=95.96  E-value=0.78  Score=40.41  Aligned_cols=118  Identities=12%  Similarity=0.135  Sum_probs=75.9

Q ss_pred             ccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCC--ceEEeeeccCCCCceEEEEeeCCCcEEEEe
Q 013274           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPG--KVYRTAMSPLAASHMLIAAGTEDVQVRLCD  176 (446)
Q Consensus        99 ~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~lasgs~d~~v~vwd  176 (446)
                      ..|-...+..+.+.|.++.+++....++.|...|+. ++.++.+...+  ....+++..   +..++++.-.++.+.+++
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~---~g~~~vs~E~~~~l~~~~   97 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG---DNQFVISDERDYAIYVIS   97 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS---TTEEEEEETTTTEEEEEE
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC---CCEEEEEECCCCcEEEEE
Confidence            345445788888887555566677888999999998 88888887654  345555543   233445544567888888


Q ss_pred             CCCCce---eeeee------CCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEcc
Q 013274          177 IASGAI---SQTLS------GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR  221 (446)
Q Consensus       177 ~~~~~~---~~~l~------~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~  221 (446)
                      +.....   +....      ..+.....++|+|.++.+++ +.+.....+|.++
T Consensus        98 v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~v-a~E~~p~~i~~~~  150 (255)
T 3qqz_A           98 LTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWF-FKEKNPIEVYKVN  150 (255)
T ss_dssp             ECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEE-EEESSSEEEEEEE
T ss_pred             cCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEE-EECcCCceEEEEc
Confidence            765432   12221      23455789999999876544 5554455666543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=95.75  E-value=1.1  Score=40.98  Aligned_cols=112  Identities=10%  Similarity=0.086  Sum_probs=66.0

Q ss_pred             EEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCC---------ceEEeeeccCCCCceEEEEee-----------
Q 013274          108 SAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPG---------KVYRTAMSPLAASHMLIAAGT-----------  167 (446)
Q Consensus       108 ~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~lasgs-----------  167 (446)
                      +..|.+.++.++++.-+.++|..||...+..... ..++         +...+.+....+...++++..           
T Consensus        17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~   95 (334)
T 2p9w_A           17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS   95 (334)
T ss_dssp             CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred             CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence            3466654555555555899999999976544332 3322         123344410022344555432           


Q ss_pred             --CCCcEEEEeCC---CCceeeeee--CCC-----------CCeEEEEEecCCCeEEEEeeCC-CcEEEEEcc
Q 013274          168 --EDVQVRLCDIA---SGAISQTLS--GHR-----------DGIMTVEWSTSSEWILVTGGCD-GAIRFWDIR  221 (446)
Q Consensus       168 --~d~~v~vwd~~---~~~~~~~l~--~h~-----------~~v~sv~~s~~~~~~l~S~s~D-g~I~iWd~~  221 (446)
                        .+..|..+|+.   +++......  +..           .....++..++|+ ..++++.- +.|...+..
T Consensus        96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~~I~rV~pd  167 (334)
T 2p9w_A           96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMPAIARVSAD  167 (334)
T ss_dssp             SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSCEEEEECTT
T ss_pred             cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCCeEEEEeCC
Confidence              25779999999   777654332  211           2477889999887 46788876 776666543

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=95.65  E-value=1.6  Score=41.74  Aligned_cols=114  Identities=12%  Similarity=0.100  Sum_probs=71.5

Q ss_pred             eEEEEEcc-CCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC--CceEEEEee--cC
Q 013274          312 VTGLKVTE-DGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAFDIW--SG  386 (446)
Q Consensus       312 v~~l~fs~-dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~--~~  386 (446)
                      ...++++| +|.++++-..+++|+.+|..++......+ .. ........+++++++..++++..  ..+..++..  ++
T Consensus       230 P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~-~~-~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~  307 (433)
T 4hw6_A          230 AKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEV-MM-DTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETG  307 (433)
T ss_dssp             BCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEE-EC-SCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTC
T ss_pred             CCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEe-cc-CCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCc
Confidence            34567888 78777777778899999987654311111 00 01122335889999886655533  456666654  23


Q ss_pred             ce--EEEeccc---------------ccceEEEEE---------cCCCCEEEEeeCCCcEEEeCCCC
Q 013274          387 KT--CLTFRGH---------------YEYVNCCCF---------SSQDQELYTGGNDRQILVWCPSR  427 (446)
Q Consensus       387 ~~--~~~l~gH---------------~~~v~~~~f---------Spd~~~lvtgs~D~~v~vW~~~~  427 (446)
                      ..  ...+.+.               -.....++|         .+++.+.++-...+.|+.++++.
T Consensus       308 ~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~G  374 (433)
T 4hw6_A          308 KLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPEG  374 (433)
T ss_dssp             CBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTTS
T ss_pred             ccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCCC
Confidence            21  1233322               234678999         78888888888889999999865

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=95.29  E-value=1.8  Score=39.95  Aligned_cols=112  Identities=10%  Similarity=0.136  Sum_probs=73.5

Q ss_pred             CCc-EEEEEeCCCeEEEEECC-------CCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCC-----CCc
Q 013274          115 DTG-LFVTGSYDHYVKVWDTN-------CTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA-----SGA  181 (446)
Q Consensus       115 ~~~-~l~s~s~D~~i~iWd~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~-----~~~  181 (446)
                      .+. +++....++.+..|++.       +.+.++++.+.+....+...+.   ...|..+-.+.-|..+|.+     ++.
T Consensus       141 ~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~---~g~Lyv~eEd~GIw~~da~p~~~~~~~  217 (355)
T 3amr_A          141 TGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDE---YGRLYIAEEDEAIWKFSAEPDGGSNGT  217 (355)
T ss_dssp             TCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETT---TTEEEEEETTTEEEEEECSTTSCSCCE
T ss_pred             CCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCC---CCeEEEecccceEEEEeCCcCCCCCce
Confidence            343 67788888999999982       3466788888877766555432   2356777777667777755     233


Q ss_pred             eeeeee-CC-CCCeEEEEE--ecCCC-eEEEEeeCCCcEEEEEcc-CCceeEEe
Q 013274          182 ISQTLS-GH-RDGIMTVEW--STSSE-WILVTGGCDGAIRFWDIR-RAGCFRVL  229 (446)
Q Consensus       182 ~~~~l~-~h-~~~v~sv~~--s~~~~-~~l~S~s~Dg~I~iWd~~-~~~~~~~~  229 (446)
                      .+..+. +| ...+..+++  .++++ ++|+|+-.+++..+||.. +...+..|
T Consensus       218 ~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f  271 (355)
T 3amr_A          218 VIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF  271 (355)
T ss_dssp             EEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred             EEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence            444332 22 246777777  44455 777777788999999986 44444444

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=95.24  E-value=2.9  Score=42.08  Aligned_cols=102  Identities=13%  Similarity=0.046  Sum_probs=59.3

Q ss_pred             EeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecC--CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCcee
Q 013274          106 ISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP--GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAIS  183 (446)
Q Consensus       106 V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~  183 (446)
                      +..+.+.+.++.++.+=...+.|..++++...........  .....+++...  +..++.+-...+.|.+.+++.....
T Consensus        42 ~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~--~~~ly~~d~~~~~I~v~~~dG~~~~  119 (619)
T 3s94_A           42 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL--GEKLYWTDSETNRIEVSNLDGSLRK  119 (619)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETT--TTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             eEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEec--CCEEEEEeCCCCEEEEEECCCCCEE
Confidence            3456666655655556555688988988754321111111  23455666543  3456666677889999999765433


Q ss_pred             eeeeCCCCCeEEEEEecCCCeEEEEe
Q 013274          184 QTLSGHRDGIMTVEWSTSSEWILVTG  209 (446)
Q Consensus       184 ~~l~~h~~~v~sv~~s~~~~~~l~S~  209 (446)
                      ..+...-.....|++.|.+.++++|-
T Consensus       120 ~l~~~~l~~P~~Iavdp~~g~ly~tD  145 (619)
T 3s94_A          120 VLFWQELDQPRAIALDPSSGFMYWTD  145 (619)
T ss_dssp             EEECSSCSCCCCEEEETTTTEEEEEE
T ss_pred             EEEeCCCCCCceEEEecCCCeEEEec
Confidence            33334445567889988766666653

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=94.99  E-value=2.1  Score=39.12  Aligned_cols=163  Identities=15%  Similarity=0.177  Sum_probs=93.9

Q ss_pred             cceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccC-ccccEeEEEEe--ecCCcEEE
Q 013274           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG-HKYAISSAIWY--PVDTGLFV  120 (446)
Q Consensus        44 ~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-h~~~V~~~~~~--~~~~~~l~  120 (446)
                      ..=.+++|++.++.++++.-..++|..||...+...+          + .+......| ....+..+.+.  .+++.+++
T Consensus        13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~----------~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~v   81 (334)
T 2p9w_A           13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFN----------V-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFA   81 (334)
T ss_dssp             CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEE----------E-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEE
T ss_pred             cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEE----------E-ecCCccccCCCcceeeEEEEeccCCCCcEEE
Confidence            3345788987677777777789999999986432110          0 000000001 01123455552  23566666


Q ss_pred             EEe-------------CCCeEEEEECC---CCeeeEEEecC----C----------ceEEeeeccCCCCceEEEEeeCC-
Q 013274          121 TGS-------------YDHYVKVWDTN---CTRVVMNFKMP----G----------KVYRTAMSPLAASHMLIAAGTED-  169 (446)
Q Consensus       121 s~s-------------~D~~i~iWd~~---~~~~~~~~~~~----~----------~~~~~~~~~~~~~~~~lasgs~d-  169 (446)
                      ...             .+..|..+|+.   +++.+....++    +          ....++..+.   +...++++.. 
T Consensus        82 v~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~---GnaYVt~s~~~  158 (334)
T 2p9w_A           82 VMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRD---GNSYVAFALGM  158 (334)
T ss_dssp             EEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTT---SCEEEEEEESS
T ss_pred             EEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCC---CCEEEeCCCCC
Confidence            433             26789999999   78777655542    1          2344444443   3355556666 


Q ss_pred             CcEEEEeCCCCcee-eeeeC----CCCCeEEEEEecCCCeEEEEeeCCCcEEEEEcc
Q 013274          170 VQVRLCDIASGAIS-QTLSG----HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR  221 (446)
Q Consensus       170 ~~v~vwd~~~~~~~-~~l~~----h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~  221 (446)
                      +.|..++.+..... ..+..    .......|++.|++..+++.-+ .|.+..+|++
T Consensus       159 ~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~  214 (334)
T 2p9w_A          159 PAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVS  214 (334)
T ss_dssp             CEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECS
T ss_pred             CeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCC
Confidence            66776666544221 11111    1223568999999987665555 8999999986

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=94.63  E-value=1.7  Score=42.34  Aligned_cols=159  Identities=10%  Similarity=0.018  Sum_probs=87.7

Q ss_pred             eeEEEeecC-CCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEE-------eecCCc
Q 013274           46 INSLQVDLT-EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIW-------YPVDTG  117 (446)
Q Consensus        46 v~~l~~s~~-~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~-------~~~~~~  117 (446)
                      -..|+|+|. ++++.++-...+.|++.|++++...             .+.. ...+.......+.+       .+ +++
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~-------------~l~~-~~~~~~~~p~~ia~~~~~~~~d~-~G~  205 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLS-------------SPLN-INTIPTNRIRSIAFNKKIEGYAD-EAE  205 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEE-------------EEEC-CTTSSCSBEEEEEECCCBTTTBC-TTC
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEE-------------EEEc-cCccccCCCcEEEEeecccccCC-CCC
Confidence            457899873 4555555555567888888764321             0000 00111223455666       44 676


Q ss_pred             EEEEEeCCC-------eEEEEECCC-Ceee-----EEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCC------
Q 013274          118 LFVTGSYDH-------YVKVWDTNC-TRVV-----MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA------  178 (446)
Q Consensus       118 ~l~s~s~D~-------~i~iWd~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~------  178 (446)
                      .|+.+.+.+       .|.+.+... +...     ..+..-.+...+++.+.  +..++++-..++.|..+|++      
T Consensus       206 ~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~--~g~LYvtd~~~g~V~r~d~~~~~~~~  283 (496)
T 3kya_A          206 YMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPI--NGELYFNSYEKGQVFRLDLVDYFKTI  283 (496)
T ss_dssp             EEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTT--TCCEEEEETTTTEEEEECHHHHHHHH
T ss_pred             EEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCC--CCeEEEEECCCCEEEEEecccccccc
Confidence            566665543       255665333 1211     11111112234455543  34567777778889999997      


Q ss_pred             -CCce-----------eeee-e-CCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEcc
Q 013274          179 -SGAI-----------SQTL-S-GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR  221 (446)
Q Consensus       179 -~~~~-----------~~~l-~-~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~  221 (446)
                       ++..           ...+ . +....-..|+|+|+++.++++=+....|+.+|..
T Consensus       284 ~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          284 KNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             HTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             cCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence             5543           1122 1 1223347899999998656676777889887653

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=94.13  E-value=4.1  Score=38.74  Aligned_cols=106  Identities=18%  Similarity=0.293  Sum_probs=67.0

Q ss_pred             EEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCce-EEeeeccCCCCceEEEEeeCCCcEEEEeCCCC-ceeeee
Q 013274          109 AIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKV-YRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AISQTL  186 (446)
Q Consensus       109 ~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~-~~~~~l  186 (446)
                      +.-+| ..+.+|-=+ ..+++|+|+++.+.+..+.++..+ +..-+++     ..|+--+ +..|+-|+++.. .+.+.+
T Consensus        71 AIMnP-~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~-----~~l~lVT-~taVyHWsi~~~s~P~kvF  142 (494)
T 1bpo_A           71 AIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL-----NTVALVT-DNAVYHWSMEGESQPVKMF  142 (494)
T ss_dssp             EEECS-SSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEET-----TEEEEEC-SSEEEEEESSSSCCCEEEE
T ss_pred             eeeCC-CCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCC-----CeEEEEc-CCeeEEecccCCCCchhhe
Confidence            34444 334444333 579999999999999888877654 3333332     1233322 568999999754 455666


Q ss_pred             eCC----CCCeEEEEEecCCCeEEEEee------CCCcEEEEEccC
Q 013274          187 SGH----RDGIMTVEWSTSSEWILVTGG------CDGAIRFWDIRR  222 (446)
Q Consensus       187 ~~h----~~~v~sv~~s~~~~~~l~S~s------~Dg~I~iWd~~~  222 (446)
                      ..|    ...|..-..+++.+|+++.|=      -.|.|.+|....
T Consensus       143 dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er  188 (494)
T 1bpo_A          143 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR  188 (494)
T ss_dssp             ECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT
T ss_pred             ecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc
Confidence            555    345666677889999877663      235666776543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=94.06  E-value=3.1  Score=37.11  Aligned_cols=103  Identities=18%  Similarity=0.243  Sum_probs=50.6

Q ss_pred             CCCEEEEeecC-----CcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeC------CCceEEEEeecCc-
Q 013274          320 DGMYLLSAGSD-----SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC------MTAVKAFDIWSGK-  387 (446)
Q Consensus       320 dg~~l~sgs~D-----~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~d~~~~~-  387 (446)
                      +++.++.|+.+     ..+.+||+.+.+-...  ...  ........+...++.+++.++      ...+.++|+.+.+ 
T Consensus       159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~--~~~--p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  234 (301)
T 2vpj_A          159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV--TPM--ATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSW  234 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEEE--CCC--SSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCCCcEEeC--CCC--CcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcE
Confidence            56666667654     4588889887643221  111  011111112222444444443      2356777775543 


Q ss_pred             -eEEEecccccceEEEEEcCCCCEEEEeeCC-----CcEEEeCCCCC
Q 013274          388 -TCLTFRGHYEYVNCCCFSSQDQELYTGGND-----RQILVWCPSRH  428 (446)
Q Consensus       388 -~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D-----~~v~vW~~~~~  428 (446)
                       .+..+........++.  -+++.++.|+.+     ..|.++++++.
T Consensus       235 ~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          235 TTVTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             EEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             EECCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence             2222221111122233  378888888776     34677787654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=93.69  E-value=3.9  Score=44.91  Aligned_cols=91  Identities=14%  Similarity=0.291  Sum_probs=58.3

Q ss_pred             CCeEEEEECCCCeeeEEEecCCce-EEeeeccCCCCceEEEEeeCCCcEEEEeCCCC-ceeeeeeCC----CCCeEEEEE
Q 013274          125 DHYVKVWDTNCTRVVMNFKMPGKV-YRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AISQTLSGH----RDGIMTVEW  198 (446)
Q Consensus       125 D~~i~iWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~-~~~~~l~~h----~~~v~sv~~  198 (446)
                      .++++|+|+++.+.+..+.++..+ +..-+++   ...-+++   +..|+-|++... .+.+.+..|    ...|..-..
T Consensus        85 g~~lQiFnl~~k~klks~~~~e~VvfWkWis~---~~l~lVT---~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~  158 (1630)
T 1xi4_A           85 GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL---NTVALVT---DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRT  158 (1630)
T ss_pred             CCeEEEeehHHhhhhcccccCCCceEEEecCC---CeeEEEc---CCeEEEeccCCCCccHHHHhcchhcccCeeEEeee
Confidence            579999999988888877776654 3222222   1112333   457999999754 344455444    455666677


Q ss_pred             ecCCCeEEEEee------CCCcEEEEEcc
Q 013274          199 STSSEWILVTGG------CDGAIRFWDIR  221 (446)
Q Consensus       199 s~~~~~~l~S~s------~Dg~I~iWd~~  221 (446)
                      +++.+|+++.|=      -.|.|.+|...
T Consensus       159 d~~~kW~~l~gi~~~~~~v~G~mQLyS~e  187 (1630)
T 1xi4_A          159 DAKQKWLLLTGISAQQNRVVGAMQLYSVD  187 (1630)
T ss_pred             CCCCCeEEEEeeccCCCcccceeeeeecc
Confidence            889999877653      34666666554

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=92.50  E-value=1.3  Score=41.17  Aligned_cols=111  Identities=19%  Similarity=0.177  Sum_probs=63.8

Q ss_pred             eEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEE---eecCCCeEEEEcCC---CcEEEEeCC-------Cce
Q 013274          312 VTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR---LQTSKPIQLATTQD---PAVVFVPCM-------TAV  378 (446)
Q Consensus       312 v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~-------~~~  378 (446)
                      ...|+|.|||.++++ ..+++|++++  .++...  +....   .....+.-+++.|+   ...+++...       ..+
T Consensus        33 P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~--~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           33 PWALAFLPDGGMLIA-ERPGRIRLFR--EGRLST--YAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             EEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEE--EEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             ceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccE--eecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            578999999997765 4569999998  332211  11111   01234566888887   444444322       455


Q ss_pred             EEEEeecCc------eEEEec---ccccceEEEEEcCCCCEEEEeeCC-------------CcEEEeCCCC
Q 013274          379 KAFDIWSGK------TCLTFR---GHYEYVNCCCFSSQDQELYTGGND-------------RQILVWCPSR  427 (446)
Q Consensus       379 ~~~d~~~~~------~~~~l~---gH~~~v~~~~fSpd~~~lvtgs~D-------------~~v~vW~~~~  427 (446)
                      ..++...+.      .+..+.   +.......++|.|||.+.++.+..             +.|...++++
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG  178 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG  178 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC
Confidence            666665331      122243   111123689999999887775431             4566667765

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=92.05  E-value=6.3  Score=35.14  Aligned_cols=106  Identities=11%  Similarity=0.124  Sum_probs=57.2

Q ss_pred             CCCEEEEeeCC----CcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCC-----
Q 013274           55 EERYLLSGASD----SSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYD-----  125 (446)
Q Consensus        55 ~~~~l~s~s~D----g~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D-----  125 (446)
                      ++.+++.|+.+    ..+.+||+.+.+...    +..      . .....+|..     +..  ++.+++.|+.+     
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~----~~~------~-p~~r~~~~~-----~~~--~~~iyv~GG~~~~~~~  116 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYS----KLG------P-PTPRDSLAA-----CAA--EGKIYTSGGSEVGNSA  116 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEE----EEC------C-SSCCBSCEE-----EEE--TTEEEEECCBBTTBSC
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEE----CCC------C-CccccceeE-----EEE--CCEEEEECCCCCCCcE
Confidence            46778888765    568888887654311    000      0 011123331     121  57788888876     


Q ss_pred             -CeEEEEECCCCeeeEEEecCCce--EEeeeccCCCCceEEEEeeC---------CCcEEEEeCCCCce
Q 013274          126 -HYVKVWDTNCTRVVMNFKMPGKV--YRTAMSPLAASHMLIAAGTE---------DVQVRLCDIASGAI  182 (446)
Q Consensus       126 -~~i~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~lasgs~---------d~~v~vwd~~~~~~  182 (446)
                       ..+.+||+.+.+....-.++...  ...+..    +..+++.|+.         -..+.+||+.+...
T Consensus       117 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W  181 (306)
T 3ii7_A          117 LYLFECYDTRTESWHTKPSMLTQRCSHGMVEA----NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETW  181 (306)
T ss_dssp             CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE----TTEEEEECCEESCTTTCEECCCEEEEETTTTEE
T ss_pred             eeeEEEEeCCCCceEeCCCCcCCcceeEEEEE----CCEEEEECCCCCCCCcccccceEEEeCCCCCeE
Confidence             56889999877654332222211  111111    2345555542         34588999988753

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=91.73  E-value=7.5  Score=35.30  Aligned_cols=156  Identities=13%  Similarity=0.116  Sum_probs=81.9

Q ss_pred             eeEeCCCccceeEEEeecCCCCEEEEeeCCCcEE-EEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeec
Q 013274           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVA-VYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV  114 (446)
Q Consensus        36 ~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~-lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~  114 (446)
                      ..+..++.+.++++.+.+ ++.+++.+ .+|.+. -+|-. +...         ..+       ..+....+..+.+.+ 
T Consensus       155 ~~~~~~~~~~~~~~~~~~-~~~~~~~g-~~G~~~~S~d~g-G~tW---------~~~-------~~~~~~~~~~~~~~~-  214 (327)
T 2xbg_A          155 QALVQEAIGVMRNLNRSP-SGEYVAVS-SRGSFYSTWEPG-QTAW---------EPH-------NRTTSRRLHNMGFTP-  214 (327)
T ss_dssp             EEEECSCCCCEEEEEECT-TSCEEEEE-TTSSEEEEECTT-CSSC---------EEE-------ECCSSSCEEEEEECT-
T ss_pred             EEeecCCCcceEEEEEcC-CCcEEEEE-CCCcEEEEeCCC-CCce---------eEC-------CCCCCCccceeEECC-
Confidence            344556677889999986 46766655 444433 33320 1110         000       012233455666554 


Q ss_pred             CCcEEEEEeCCCeEEEEECCCCeeeEEEecC-----CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeee--
Q 013274          115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-----GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS--  187 (446)
Q Consensus       115 ~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~--  187 (446)
                      ++. ++.++.++.+.+++.+.++.-..+..+     ..++.+.+.+   +..+++++. ++.| ++..+.|+--..+.  
T Consensus       215 ~g~-~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~---~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~  288 (327)
T 2xbg_A          215 DGR-LWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT---PNEVWLAGG-AGAL-LCSQDGGQTWQQDVDV  288 (327)
T ss_dssp             TSC-EEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS---SSCEEEEES-TTCE-EEESSTTSSCEECGGG
T ss_pred             CCC-EEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecC---CCEEEEEeC-CCeE-EEeCCCCcccEEcCcc
Confidence            454 445566788877753323322222211     1245555554   234555554 6666 45556665444443  


Q ss_pred             -CCCCCeEEEEEecCCCeEEEEeeCCCcEEEEE
Q 013274          188 -GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD  219 (446)
Q Consensus       188 -~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd  219 (446)
                       .+...+.+|.|.+++.  ++.++.+|.|.-++
T Consensus       289 ~~~~~~~~~v~~~~~~~--~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          289 KKVPSNFYKILFFSPDQ--GFILGQKGILLRYV  319 (327)
T ss_dssp             TTSSSCCCEEEEEETTE--EEEECSTTEEEEEC
T ss_pred             CCCCCCeEEEEEECCCc--eEEEcCCceEEEEc
Confidence             2346788899975543  45667789877665

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=91.51  E-value=7.3  Score=34.73  Aligned_cols=99  Identities=9%  Similarity=0.024  Sum_probs=49.4

Q ss_pred             cEEEEEeC--CCeEEEEECCCCeeeEEEecCCc--eEEeeeccCCCCceEEEEeeCC----CcEEEEeCCCCceee--ee
Q 013274          117 GLFVTGSY--DHYVKVWDTNCTRVVMNFKMPGK--VYRTAMSPLAASHMLIAAGTED----VQVRLCDIASGAISQ--TL  186 (446)
Q Consensus       117 ~~l~s~s~--D~~i~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~lasgs~d----~~v~vwd~~~~~~~~--~l  186 (446)
                      .+++.||.  ...+.++|..+.+-...-.++..  ...++.    .+..+++.|+.+    ..+.+||+.++....  .+
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~----~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~   88 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF----WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGP   88 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE----ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECC
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE----ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCC
Confidence            34555554  36788999887764432222211  111111    133466666544    578899998875322  22


Q ss_pred             eCCCCCeEEEEEecCCCeEEEEeeCC------CcEEEEEccC
Q 013274          187 SGHRDGIMTVEWSTSSEWILVTGGCD------GAIRFWDIRR  222 (446)
Q Consensus       187 ~~h~~~v~sv~~s~~~~~~l~S~s~D------g~I~iWd~~~  222 (446)
                      ......-.++.+  +++ +++.|+.+      ..+.+||+.+
T Consensus        89 p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~d~~~  127 (306)
T 3ii7_A           89 PTPRDSLAACAA--EGK-IYTSGGSEVGNSALYLFECYDTRT  127 (306)
T ss_dssp             SSCCBSCEEEEE--TTE-EEEECCBBTTBSCCCCEEEEETTT
T ss_pred             CccccceeEEEE--CCE-EEEECCCCCCCcEeeeEEEEeCCC
Confidence            211112222222  443 55666654      3456666544

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=91.34  E-value=7  Score=34.22  Aligned_cols=168  Identities=13%  Similarity=0.153  Sum_probs=97.3

Q ss_pred             eeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCC
Q 013274          185 TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPR  264 (446)
Q Consensus       185 ~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (446)
                      .+.+-.+.+..++++|+++.+++....++.|...|+. ++.++.+.-                                 
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l---------------------------------   66 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL---------------------------------   66 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC---------------------------------
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec---------------------------------
Confidence            4556667899999999877666667778888888876 443332210                                 


Q ss_pred             CccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCcee
Q 013274          265 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNT  344 (446)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~  344 (446)
                                            .                   + ....-.|++.++|.++++.-.++.+.++++..... 
T Consensus        67 ----------------------~-------------------g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~-  103 (255)
T 3qqz_A           67 ----------------------D-------------------F-VKDLETIEYIGDNQFVISDERDYAIYVISLTPNSE-  103 (255)
T ss_dssp             ----------------------S-------------------S-CSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCC-
T ss_pred             ----------------------C-------------------C-CCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCe-
Confidence                                  0                   0 11245567778888877766677888888765432 


Q ss_pred             eeeeeEEEeec-----C-CCeEEEEcCCCcEEEEeCC-CceEEEEee---cCceEEEe-------cccccceEEEEEcCC
Q 013274          345 LVNFETVRLQT-----S-KPIQLATTQDPAVVFVPCM-TAVKAFDIW---SGKTCLTF-------RGHYEYVNCCCFSSQ  407 (446)
Q Consensus       345 ~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~-~~~~~~d~~---~~~~~~~l-------~gH~~~v~~~~fSpd  407 (446)
                      ........+..     . .---+++.+....++++.. ....+|.+.   ....+..+       ..+...+..++|.|.
T Consensus       104 i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~  183 (255)
T 3qqz_A          104 VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQ  183 (255)
T ss_dssp             EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETT
T ss_pred             eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCC
Confidence            11111111110     1 1134777777766666543 233455443   11111211       123446789999998


Q ss_pred             CCE-EEEeeCCCcEEEeCCCCCC
Q 013274          408 DQE-LYTGGNDRQILVWCPSRHI  429 (446)
Q Consensus       408 ~~~-lvtgs~D~~v~vW~~~~~~  429 (446)
                      ... ++.....+.|.+.|+....
T Consensus       184 tg~lliLS~~s~~L~~~d~~g~~  206 (255)
T 3qqz_A          184 KNTLLVLSHESRALQEVTLVGEV  206 (255)
T ss_dssp             TTEEEEEETTTTEEEEECTTCCE
T ss_pred             CCeEEEEECCCCeEEEEcCCCCE
Confidence            555 4455556778888887553

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=90.89  E-value=5.8  Score=35.26  Aligned_cols=144  Identities=17%  Similarity=0.201  Sum_probs=74.4

Q ss_pred             CCCEEEEeeCCC-----cEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCC----
Q 013274           55 EERYLLSGASDS-----SVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYD----  125 (446)
Q Consensus        55 ~~~~l~s~s~Dg-----~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D----  125 (446)
                      ++.+++.|+.++     .+.+||+.+.+...    +.      .. .....+|..     ...  ++.+++.|+.+    
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~----~~------~~-p~~r~~~~~-----~~~--~~~iyv~GG~~~~~~  173 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSM----LG------DM-QTAREGAGL-----VVA--SGVIYCLGGYDGLNI  173 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEE----EE------EC-SSCCBSCEE-----EEE--TTEEEEECCBCSSCB
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEE----CC------CC-CCCcccceE-----EEE--CCEEEEECCCCCCcc
Confidence            467777777553     57788876554311    00      00 011123331     122  56777887765    


Q ss_pred             -CeEEEEECCCCeeeEEEecCCce--EEeeeccCCCCceEEEEeeCC-----CcEEEEeCCCCceee--eeeCCCCCeEE
Q 013274          126 -HYVKVWDTNCTRVVMNFKMPGKV--YRTAMSPLAASHMLIAAGTED-----VQVRLCDIASGAISQ--TLSGHRDGIMT  195 (446)
Q Consensus       126 -~~i~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~lasgs~d-----~~v~vwd~~~~~~~~--~l~~h~~~v~s  195 (446)
                       ..+.++|+.+.+-...-.++...  ..+...    +..+++.|+.+     ..+.+||++++....  .+........+
T Consensus       174 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~----~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~  249 (301)
T 2vpj_A          174 LNSVEKYDPHTGHWTNVTPMATKRSGAGVALL----NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGA  249 (301)
T ss_dssp             CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE----TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred             cceEEEEeCCCCcEEeCCCCCcccccceEEEE----CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeE
Confidence             46889998877654332222211  111111    23566666543     468999998875332  22211122223


Q ss_pred             EEEecCCCeEEEEeeCC-----CcEEEEEccCC
Q 013274          196 VEWSTSSEWILVTGGCD-----GAIRFWDIRRA  223 (446)
Q Consensus       196 v~~s~~~~~~l~S~s~D-----g~I~iWd~~~~  223 (446)
                      +.+  +++ +++.|+.+     ..|.+||+.+.
T Consensus       250 ~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          250 TVL--RGR-LYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             EEE--TTE-EEEECCBCSSSBEEEEEEEETTTT
T ss_pred             EEE--CCE-EEEEcCcCCCcccccEEEEcCCCC
Confidence            332  444 56777655     35777887654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=90.60  E-value=10  Score=34.95  Aligned_cols=114  Identities=11%  Similarity=0.103  Sum_probs=64.3

Q ss_pred             eEEEEEcc--CCC--EEEEeec--CCcEEEEecCcCceeeeeeeEEEe-ecCCCeEEEEcCCCcEEEEeCC---------
Q 013274          312 VTGLKVTE--DGM--YLLSAGS--DSRIRLWDVESGRNTLVNFETVRL-QTSKPIQLATTQDPAVVFVPCM---------  375 (446)
Q Consensus       312 v~~l~fs~--dg~--~l~sgs~--D~~i~lWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------  375 (446)
                      ...+.+.+  +|.  +++....  +.+|.+|++.........+..... ....+..+...+++...+....         
T Consensus       114 PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~  193 (355)
T 3sre_A          114 PHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKS  193 (355)
T ss_dssp             EEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHH
T ss_pred             eeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCccccc
Confidence            34455544  453  3344333  678889887654322222222111 1234556777777776555431         


Q ss_pred             -------CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEE-eeCCCcEEEeCCC
Q 013274          376 -------TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYT-GGNDRQILVWCPS  426 (446)
Q Consensus       376 -------~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvt-gs~D~~v~vW~~~  426 (446)
                             ..-++|.+..++ +..+...-...+.++||||++.|+- -+..+.|.+|+.+
T Consensus       194 ~e~~~~~~~g~vyr~d~~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~  251 (355)
T 3sre_A          194 WEMHLGLAWSFVTYYSPND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKH  251 (355)
T ss_dssp             HHHHTTCCCEEEEEECTTC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             chhhccCCccEEEEEECCe-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence                   124566665553 3334444456799999999987664 4557888888775

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=90.26  E-value=16  Score=36.59  Aligned_cols=165  Identities=9%  Similarity=-0.011  Sum_probs=88.7

Q ss_pred             cceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEE-
Q 013274           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG-  122 (446)
Q Consensus        44 ~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~-  122 (446)
                      .....|+++..++++.++-+..+.|.+.+++....           .++..  ...    .....+++.|.++.++.|- 
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~-----------~~l~~--~~l----~~P~~Iavdp~~g~ly~tD~  146 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-----------KVLFW--QEL----DQPRAIALDPSSGFMYWTDW  146 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----------EEEEC--SSC----SCCCCEEEETTTTEEEEEEC
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE-----------EEEEe--CCC----CCCceEEEecCCCeEEEecc
Confidence            56788999876677777777889999999864211           11111  111    1123456666455455543 


Q ss_pred             eCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecC
Q 013274          123 SYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTS  201 (446)
Q Consensus       123 s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~  201 (446)
                      +....|...+++......... .-.....+++.+.  +..++.+=...+.|...|++.......+.+.-....++++..+
T Consensus       147 g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~--~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~  224 (619)
T 3s94_A          147 GEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYE--EQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED  224 (619)
T ss_dssp             SSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETT--TTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS
T ss_pred             CCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEcc--CCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC
Confidence            223566666665332222111 1122345555543  2345555556778999998765443333322222346666544


Q ss_pred             CCeEEEEeeCCCcEEEEEccCCceeEEe
Q 013274          202 SEWILVTGGCDGAIRFWDIRRAGCFRVL  229 (446)
Q Consensus       202 ~~~~l~S~s~Dg~I~iWd~~~~~~~~~~  229 (446)
                        .+++|-...+.|...|..+++....+
T Consensus       225 --~ly~td~~~~~V~~~d~~tg~~~~~i  250 (619)
T 3s94_A          225 --ILYWTDWSTHSILACNKYTGEGLREI  250 (619)
T ss_dssp             --EEEEECTTTCSEEEEESSSCCCCEEC
T ss_pred             --EEEEecCCCCEEEEEECCCCcccEEE
Confidence              56677666788999998776654443

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=89.58  E-value=11  Score=33.51  Aligned_cols=104  Identities=13%  Similarity=0.203  Sum_probs=49.7

Q ss_pred             CCCEEEEeecC-------CcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC------CceEEEEeecC
Q 013274          320 DGMYLLSAGSD-------SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM------TAVKAFDIWSG  386 (446)
Q Consensus       320 dg~~l~sgs~D-------~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~d~~~~  386 (446)
                      +++.++.|+.+       ..+.+||+.+.+-...  ....  .......+...+..+++.++.      ..+.++|..+.
T Consensus       155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~--~~~p--~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~  230 (302)
T 2xn4_A          155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYI--AEMS--TRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTN  230 (302)
T ss_dssp             TTEEEEECCEETTTTEECCCEEEEETTTTEEEEE--CCCS--SCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred             CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEEC--CCCc--cccccccEEEECCEEEEECCCCCCcccceEEEEeCCCC
Confidence            45555556543       3488889887643221  1111  111111122224444444432      35677776543


Q ss_pred             c--eEEEecccccceEEEEEcCCCCEEEEeeCCC-----cEEEeCCCCCC
Q 013274          387 K--TCLTFRGHYEYVNCCCFSSQDQELYTGGNDR-----QILVWCPSRHI  429 (446)
Q Consensus       387 ~--~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~-----~v~vW~~~~~~  429 (446)
                      +  .+..+......-..+.  .+++.++.|+.++     .+.++|+.+..
T Consensus       231 ~W~~~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          231 AWRQVADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             EEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CEeeCCCCCCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence            2  2222221111112222  3788888888764     47888887654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=89.33  E-value=4.2  Score=36.24  Aligned_cols=144  Identities=18%  Similarity=0.261  Sum_probs=72.6

Q ss_pred             CCCEEEEeeCCC-----cEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCC----
Q 013274           55 EERYLLSGASDS-----SVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYD----  125 (446)
Q Consensus        55 ~~~~l~s~s~Dg-----~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D----  125 (446)
                      ++.+++.|+.++     .+.+||+.+.+....    ..      . .....+|.     ++..  ++.+++.|+.+    
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~----~~------~-p~~r~~~~-----~~~~--~~~iyv~GG~~~~~~  169 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV----AP------M-NTRRSSVG-----VGVV--GGLLYAVGGYDVASR  169 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEE----CC------C-SSCCBSCE-----EEEE--TTEEEEECCEETTTT
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeec----CC------C-CCcccCce-----EEEE--CCEEEEEeCCCCCCC
Confidence            467777777664     477788765543110    00      0 01112332     1222  56677777653    


Q ss_pred             ---CeEEEEECCCCeeeEEEecCCce--EEeeeccCCCCceEEEEeeCC-----CcEEEEeCCCCceee--eeeCCCCCe
Q 013274          126 ---HYVKVWDTNCTRVVMNFKMPGKV--YRTAMSPLAASHMLIAAGTED-----VQVRLCDIASGAISQ--TLSGHRDGI  193 (446)
Q Consensus       126 ---~~i~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~lasgs~d-----~~v~vwd~~~~~~~~--~l~~h~~~v  193 (446)
                         ..+.++|+.+.+-...-.++...  ..+...    +..+++.|+.+     ..+.+||++++....  .+......-
T Consensus       170 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~  245 (302)
T 2xn4_A          170 QCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL----NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNA  245 (302)
T ss_dssp             EECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE----TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSC
T ss_pred             ccccEEEEEeCCCCcEEECCCCccccccccEEEE----CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccC
Confidence               35889998877654332222211  111111    33566666543     468999998875322  121111111


Q ss_pred             EEEEEecCCCeEEEEeeCCC-----cEEEEEccCC
Q 013274          194 MTVEWSTSSEWILVTGGCDG-----AIRFWDIRRA  223 (446)
Q Consensus       194 ~sv~~s~~~~~~l~S~s~Dg-----~I~iWd~~~~  223 (446)
                      ..+.+  +++ +++.|+.++     .+.+||+.+.
T Consensus       246 ~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          246 GVCAV--NGL-LYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             EEEEE--TTE-EEEECCBCSSSBCCCEEEEETTTT
T ss_pred             eEEEE--CCE-EEEECCcCCCcccccEEEEcCCCC
Confidence            22222  444 567777553     4788887654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=89.14  E-value=15  Score=34.80  Aligned_cols=107  Identities=9%  Similarity=0.158  Sum_probs=75.3

Q ss_pred             EccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEee----cCCCeEEEEcCCCcEEEEeCCCceEEEEeecCc-----
Q 013274          317 VTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQ----TSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGK-----  387 (446)
Q Consensus       317 fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----  387 (446)
                      ...+|..++.+ .++.||.-++....    .+..+...    .....++..+|++.++++.+...+.+..+-.+.     
T Consensus        28 ~~~n~t~i~~a-~~n~iR~~~i~~~~----~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~  102 (452)
T 3pbp_A           28 SSQNGTRIVFI-QDNIIRWYNVLTDS----LYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVED  102 (452)
T ss_dssp             EETTTTEEEEE-ETTEEEEEETTTCS----SCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCC
T ss_pred             EEcCCCEEEEE-ECCEEEEEECCCCC----cceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcc
Confidence            44677776655 56889988887432    23333332    224567899999999999988888888874221     


Q ss_pred             -------eEEEecc------cccceEEEEEcCC---CCEEEEeeCCCcEEEeCCCCC
Q 013274          388 -------TCLTFRG------HYEYVNCCCFSSQ---DQELYTGGNDRQILVWCPSRH  428 (446)
Q Consensus       388 -------~~~~l~g------H~~~v~~~~fSpd---~~~lvtgs~D~~v~vW~~~~~  428 (446)
                             ..+++.-      ...+|-.+.|+|-   +..||+--.|++||+|++..+
T Consensus       103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s  159 (452)
T 3pbp_A          103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNS  159 (452)
T ss_dssp             HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCT
T ss_pred             cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccC
Confidence                   1223332      2567999999996   467999999999999999864

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=88.95  E-value=3.5  Score=38.15  Aligned_cols=103  Identities=17%  Similarity=0.184  Sum_probs=56.0

Q ss_pred             CeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCC---CcEEEEe-CC--------Cce
Q 013274          311 AVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQD---PAVVFVP-CM--------TAV  378 (446)
Q Consensus       311 ~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~--------~~~  378 (446)
                      ....|+|.|||.++++ ..+++|+++|. .++..+..+.........+.-+++.|+   ...+++. ..        ..+
T Consensus        30 ~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v  107 (354)
T 3a9g_A           30 VPWSIAPLGGGRYLVT-ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV  107 (354)
T ss_dssp             CEEEEEEEETTEEEEE-ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred             CCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence            3678999999986665 45699999973 343111111100001234556788886   3444443 21        345


Q ss_pred             EEEEeecC--c-----e-EEEeccc-ccceEEEEEcCCCCEEEEee
Q 013274          379 KAFDIWSG--K-----T-CLTFRGH-YEYVNCCCFSSQDQELYTGG  415 (446)
Q Consensus       379 ~~~d~~~~--~-----~-~~~l~gH-~~~v~~~~fSpd~~~lvtgs  415 (446)
                      ..++....  .     . +..+... .-....|+|.|||.+.+|.+
T Consensus       108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G  153 (354)
T 3a9g_A          108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG  153 (354)
T ss_dssp             EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred             EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence            55555433  1     1 1123311 11246899999999888754

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=87.75  E-value=24  Score=35.36  Aligned_cols=164  Identities=8%  Similarity=0.022  Sum_probs=96.2

Q ss_pred             cceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEE-
Q 013274           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG-  122 (446)
Q Consensus        44 ~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~-  122 (446)
                      .....|+++..++++.++-+..+.|.+.+++...           +.++..      ..-.....+++.|..+.++.|- 
T Consensus        80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~-----------~~~l~~------~~l~~P~~iavdp~~G~lY~tD~  142 (628)
T 4a0p_A           80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH-----------RQVLVW------KDLDSPRALALDPAEGFMYWTEW  142 (628)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT-----------CEEEEC------SSCCCEEEEEEETTTTEEEEEEC
T ss_pred             CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc-----------EEEEEe------CCCCCcccEEEccCCCeEEEeCC
Confidence            4567788876566777777777888888875321           111111      0112244667766566555543 


Q ss_pred             eCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCC
Q 013274          123 SYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSS  202 (446)
Q Consensus       123 s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~  202 (446)
                      +....|...+++..........-.....+++.+.  +..+..+=...+.|..+|++.... ..+...-.....+++..  
T Consensus       143 g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~--~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~--  217 (628)
T 4a0p_A          143 GGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYA--KRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ--  217 (628)
T ss_dssp             SSSCEEEEEETTSCSCEEEECSCSSEEEEEEETT--TTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET--
T ss_pred             CCCCEEEEEeCCCCceEEEECCCCCcceEEEccc--cCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC--
Confidence            2356777777765433222222223455666543  234555556678899999976544 34444444456788764  


Q ss_pred             CeEEEEeeCCCcEEEEEccCCceeEEe
Q 013274          203 EWILVTGGCDGAIRFWDIRRAGCFRVL  229 (446)
Q Consensus       203 ~~~l~S~s~Dg~I~iWd~~~~~~~~~~  229 (446)
                      ..+++|-...+.|...|..+++....+
T Consensus       218 ~~ly~tD~~~~~I~~~dk~tg~~~~~l  244 (628)
T 4a0p_A          218 DYIYWTDWSRRSIERANKTSGQNRTII  244 (628)
T ss_dssp             TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             CEEEEecCCCCEEEEEECCCCCceEEE
Confidence            356677666788998987766554444

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=86.34  E-value=3.4  Score=37.99  Aligned_cols=112  Identities=7%  Similarity=0.048  Sum_probs=70.2

Q ss_pred             cEEEEEeCCCeEEEEECCCCeeeEEEecC--CceEEeeeccCCCCceEEEEe-eCCCcEEEEeCCCCceeeeeeC----C
Q 013274          117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMP--GKVYRTAMSPLAASHMLIAAG-TEDVQVRLCDIASGAISQTLSG----H  189 (446)
Q Consensus       117 ~~l~s~s~D~~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~lasg-s~d~~v~vwd~~~~~~~~~l~~----h  189 (446)
                      ++++.++.||.|.-.|.++|+.+-++...  .......-.....++..++.. +.||.+..+|.++|.....+.-    .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            47889999999999999999998887654  222211111111122344443 6899999999998855443321    1


Q ss_pred             CCCeEE---EEE------ecCCCeEEEEeeCCCcEEEEEccCCceeEEee
Q 013274          190 RDGIMT---VEW------STSSEWILVTGGCDGAIRFWDIRRAGCFRVLD  230 (446)
Q Consensus       190 ~~~v~s---v~~------s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~  230 (446)
                      ..++..   ..+      + .+. .+++|+.+|.+.--|+++++.+-.+.
T Consensus        91 ~SP~~~~~~pvv~~~~~~~-~~g-~Vy~Gs~~g~l~ald~~tG~~~W~~~  138 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIV-EDE-KVYTGSMRTIMYTINMLNGEIISAFG  138 (339)
T ss_dssp             TCSEEEECC-----------CCE-EEEECEEEEEEEEEETTTCCEEEEES
T ss_pred             ccccccCCCceeecccccc-cCC-EEEEEecCCEEEEEECCCCcEEEEEe
Confidence            122221   000      1 222 46789999999999999998766654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=86.20  E-value=18  Score=32.27  Aligned_cols=58  Identities=9%  Similarity=0.088  Sum_probs=30.9

Q ss_pred             EEEEEeCCCeEEEEECCCCeeeEEEecCC--c--eEEeeeccCCCCceEEEEeeC-----C------CcEEEEeCCCCce
Q 013274          118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPG--K--VYRTAMSPLAASHMLIAAGTE-----D------VQVRLCDIASGAI  182 (446)
Q Consensus       118 ~l~s~s~D~~i~iWd~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~lasgs~-----d------~~v~vwd~~~~~~  182 (446)
                      +++.|+  ..+.+||..+.+-.. ..++.  .  ...++..    +..+++.|+.     .      ..+.+||..+++.
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W   79 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTK----ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW   79 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECT----TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE
T ss_pred             EEEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEE----CCEEEEEcCcccCCCCCccccccceEEecCCCCeE
Confidence            344555  578999998877543 33322  1  1222221    2345555552     1      1378889888753

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=86.17  E-value=18  Score=32.20  Aligned_cols=103  Identities=11%  Similarity=0.154  Sum_probs=49.0

Q ss_pred             CCCEEEEeecC-----CcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC------CceEEEEeecCc-
Q 013274          320 DGMYLLSAGSD-----SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM------TAVKAFDIWSGK-  387 (446)
Q Consensus       320 dg~~l~sgs~D-----~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~d~~~~~-  387 (446)
                      +++.++.|+.+     ..+.+||+.+.+-...  ........ ...++. .+..+++.++.      ..+..+|+.+.+ 
T Consensus       168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~--~~~p~~r~-~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W  243 (308)
T 1zgk_A          168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMI--TAMNTIRS-GAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETW  243 (308)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEEC--CCCSSCCB-SCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeC--CCCCCccc-cceEEE-ECCEEEEEeCCCCCCccceEEEEeCCCCcE
Confidence            56666666654     4588889887643221  11100000 111222 24444444432      356777765442 


Q ss_pred             -eEEEecccccceEEEEEcCCCCEEEEeeCC-----CcEEEeCCCCC
Q 013274          388 -TCLTFRGHYEYVNCCCFSSQDQELYTGGND-----RQILVWCPSRH  428 (446)
Q Consensus       388 -~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D-----~~v~vW~~~~~  428 (446)
                       .+..+.........+.  -+++.++-|+.+     ..+.++++.+.
T Consensus       244 ~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          244 TFVAPMKHRRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             EECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             EECCCCCCCccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence             1222221111112222  377888888765     34667777654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=85.32  E-value=7.7  Score=35.73  Aligned_cols=103  Identities=17%  Similarity=0.127  Sum_probs=58.7

Q ss_pred             CeEEEEEccCCCEEEEeecCCcEEEEecCcCceeee-eeeEE-EeecCCCeEEEEcCC---CcEEEEe----CCCceEEE
Q 013274          311 AVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLV-NFETV-RLQTSKPIQLATTQD---PAVVFVP----CMTAVKAF  381 (446)
Q Consensus       311 ~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~~  381 (446)
                      ....|+|.|||.++++--..|+|++++...++.... .+... ........-+++.|+   ...+++.    ....+.-+
T Consensus        33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~  112 (347)
T 3das_A           33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRM  112 (347)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEE
T ss_pred             CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEE
Confidence            468899999999888765589999998765543211 01000 011234456788775   2333332    22344445


Q ss_pred             EeecC----------c-eEEEec---ccccceEEEEEcCCCCEEEEee
Q 013274          382 DIWSG----------K-TCLTFR---GHYEYVNCCCFSSQDQELYTGG  415 (446)
Q Consensus       382 d~~~~----------~-~~~~l~---gH~~~v~~~~fSpd~~~lvtgs  415 (446)
                      .+..+          + ++..+.   .|.  ...|+|.|||.+.++.+
T Consensus       113 ~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A          113 LYDEKKPSGEQLGAPDTVFRGIPKGVIHN--GGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             EBCTTSCTTCCBCCCEEEEEEECCCSSCC--CCCEEECTTSCEEEECB
T ss_pred             EeCCCCcccccCCCcEEEEEcCCCCCCcc--CccccCCCCCCEEEEEC
Confidence            44331          1 112232   343  35799999999888865

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=84.59  E-value=10  Score=33.83  Aligned_cols=144  Identities=17%  Similarity=0.198  Sum_probs=73.2

Q ss_pred             CCCEEEEeeCC-----CcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCC----
Q 013274           55 EERYLLSGASD-----SSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYD----  125 (446)
Q Consensus        55 ~~~~l~s~s~D-----g~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D----  125 (446)
                      ++++++.|+.+     ..+.+||+.+.+..... .+          .....+|..     +..  ++.+++.|+.+    
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~----------p~~r~~~~~-----~~~--~~~iyv~GG~~~~~~  182 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVA-PM----------LTRRIGVGV-----AVL--NRLLYAVGGFDGTNR  182 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECC-CC----------SSCCBSCEE-----EEE--TTEEEEECCBCSSCB
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeEeECC-CC----------CccccceEE-----EEE--CCEEEEEeCCCCCCc
Confidence            46777777654     35778888765432110 00          011123331     222  56777777765    


Q ss_pred             -CeEEEEECCCCeeeEEEecCCce--EEeeeccCCCCceEEEEeeCC-----CcEEEEeCCCCceee--eeeCCCCCeEE
Q 013274          126 -HYVKVWDTNCTRVVMNFKMPGKV--YRTAMSPLAASHMLIAAGTED-----VQVRLCDIASGAISQ--TLSGHRDGIMT  195 (446)
Q Consensus       126 -~~i~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~lasgs~d-----~~v~vwd~~~~~~~~--~l~~h~~~v~s  195 (446)
                       ..+.++|+.+.+-...-.++...  ..+...    +..+++.|+.+     ..+.+||+++.....  .+........+
T Consensus       183 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~  258 (308)
T 1zgk_A          183 LNSAECYYPERNEWRMITAMNTIRSGAGVCVL----HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGI  258 (308)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBSCEEEEE----TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEE
T ss_pred             CceEEEEeCCCCeEeeCCCCCCccccceEEEE----CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEE
Confidence             45888998876543322222111  111111    33466666543     569999998875322  22211122222


Q ss_pred             EEEecCCCeEEEEeeCC-----CcEEEEEccCC
Q 013274          196 VEWSTSSEWILVTGGCD-----GAIRFWDIRRA  223 (446)
Q Consensus       196 v~~s~~~~~~l~S~s~D-----g~I~iWd~~~~  223 (446)
                      +.+  +++ +++.|+.+     ..+.+||+.+.
T Consensus       259 ~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          259 TVH--QGR-IYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             EEE--TTE-EEEECCBCSSCBCCEEEEEETTTT
T ss_pred             EEE--CCE-EEEEcCcCCCcccceEEEEcCCCC
Confidence            222  444 56777654     45677777654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=84.47  E-value=10  Score=36.35  Aligned_cols=106  Identities=13%  Similarity=0.129  Sum_probs=57.3

Q ss_pred             CeEEEEEccCCCEEEEeecCCcEEEEecCcCceeee-eeeEEEe---ecCCCeEEEEcCC---CcEEEEeCC--------
Q 013274          311 AVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLV-NFETVRL---QTSKPIQLATTQD---PAVVFVPCM--------  375 (446)
Q Consensus       311 ~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~---~~~~~~~~~--------  375 (446)
                      ....|+|.|+|.++++-...++|++++...++.... .+.....   ......-+++.|+   ...+++...        
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~  107 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD  107 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence            367899999999888765445798887655443211 1111000   0122335788874   444443321        


Q ss_pred             ------CceEEEEeecC-------ce-EEEecc-cccceEEEEEcCCCCEEEEeeC
Q 013274          376 ------TAVKAFDIWSG-------KT-CLTFRG-HYEYVNCCCFSSQDQELYTGGN  416 (446)
Q Consensus       376 ------~~~~~~d~~~~-------~~-~~~l~g-H~~~v~~~~fSpd~~~lvtgs~  416 (446)
                            ..+.-+++...       +. +..+.. ..-....|+|.|||.+.++.+.
T Consensus       108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                  23444444322       11 112322 1113689999999998887553

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=82.75  E-value=33  Score=32.48  Aligned_cols=94  Identities=15%  Similarity=0.190  Sum_probs=61.4

Q ss_pred             EeEEEEeecCCcEEEEEeCCCeEEEEECCCCe------------eeEEEec-------CCceEEeeeccCCCCceEEEEe
Q 013274          106 ISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTR------------VVMNFKM-------PGKVYRTAMSPLAASHMLIAAG  166 (446)
Q Consensus       106 V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~------------~~~~~~~-------~~~~~~~~~~~~~~~~~~lasg  166 (446)
                      |..+..+| +|.+||..+ +++|.|-.+..+.            ..+.+..       ...+..+.|+|.+..+..|++=
T Consensus        68 i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           68 TFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             eeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            44455565 788888775 4689999987332            1233443       2458889999998776677777


Q ss_pred             eCCCcEEEEeCCCC-ceeeeee---------CCCCCeEEEEEecC
Q 013274          167 TEDVQVRLCDIASG-AISQTLS---------GHRDGIMTVEWSTS  201 (446)
Q Consensus       167 s~d~~v~vwd~~~~-~~~~~l~---------~h~~~v~sv~~s~~  201 (446)
                      ..|+.|++||+... .....|.         .+...|.+++|.++
T Consensus       146 tsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~  190 (452)
T 3pbp_A          146 KEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKD  190 (452)
T ss_dssp             ETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTT
T ss_pred             ecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCC
Confidence            88999999999863 1111332         22345667777654

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=82.25  E-value=33  Score=36.34  Aligned_cols=39  Identities=26%  Similarity=0.309  Sum_probs=30.7

Q ss_pred             cEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEec
Q 013274          105 AISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM  144 (446)
Q Consensus       105 ~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~  144 (446)
                      .+.++...+ +..+++|-+.|+++|+|++.+++++.+..+
T Consensus       237 ~~~~~~~~~-~~~~lftl~~D~~LRiWsl~t~~~v~t~dL  275 (950)
T 4gq2_M          237 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETIEL  275 (950)
T ss_dssp             CEEEEEEET-TTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred             eEEEEeecC-CCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence            344444443 566899999999999999999999887764

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=81.72  E-value=13  Score=33.30  Aligned_cols=64  Identities=13%  Similarity=0.087  Sum_probs=36.1

Q ss_pred             CCcEEEEEeC-C-----CeEEEEECCCCeeeEEEecCCce--EEeeeccCCCCceEEEEeeCCC-----cEEEEeCCCCc
Q 013274          115 DTGLFVTGSY-D-----HYVKVWDTNCTRVVMNFKMPGKV--YRTAMSPLAASHMLIAAGTEDV-----QVRLCDIASGA  181 (446)
Q Consensus       115 ~~~~l~s~s~-D-----~~i~iWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~lasgs~d~-----~v~vwd~~~~~  181 (446)
                      ++.+++.||. +     ..+.++|+.+.+-...-.++...  ..++..    +..+++.|+.++     .+.+||+++.+
T Consensus       148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH----DGRIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE----TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE----CCEEEEEeccCCCCccceEEEEECCCCe
Confidence            5677788876 2     46889998876544322222211  111111    234555555433     58899998875


Q ss_pred             e
Q 013274          182 I  182 (446)
Q Consensus       182 ~  182 (446)
                      .
T Consensus       224 W  224 (315)
T 4asc_A          224 W  224 (315)
T ss_dssp             E
T ss_pred             E
Confidence            3

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	446
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-18
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-16
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-11
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-14
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	9e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	8e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.004
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-11
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	7e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	7e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	9e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-08
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.002
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-07
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	6e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	7e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.002
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.001
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	4e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	5e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	3e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.004

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.1 bits (201), Expect = 6e-18
 Identities = 48/382 (12%), Positives = 108/382 (28%), Gaps = 81/382 (21%)

Query: 42  HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG 101
           H+  +  +         ++S + D+++ V+D +                     ++   G
Sbjct: 16  HRSPVTRVIFH-PVFSVMVSASEDATIKVWDYETGDF-----------------ERTLKG 57

Query: 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHM 161
           H  ++    +      L    +              +         V   ++ P   +  
Sbjct: 58  HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP---NGD 114

Query: 162 LIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR 221
            I + + D  +++ ++ +G   +T +GHR+ +  V  +     I  +   D  +R W + 
Sbjct: 115 HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLI-ASCSNDQTVRVWVVA 173

Query: 222 RAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSV 281
              C   L + +  +       +   S     +  +        P   S + +   +   
Sbjct: 174 TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 233

Query: 282 GRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG 341
                 G     L             H   V G+     G ++LS   D  +R+WD ++ 
Sbjct: 234 VS---TGMCLMTL-----------VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 279

Query: 342 RNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNC 401
                          + ++                              T   H  +V  
Sbjct: 280 ---------------RCMK------------------------------TLNAHEHFVTS 294

Query: 402 CCFSSQDQELYTGGNDRQILVW 423
             F      + TG  D+ + VW
Sbjct: 295 LDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.2 bits (100), Expect = 4e-05
 Identities = 24/162 (14%), Positives = 46/162 (28%), Gaps = 39/162 (24%)

Query: 306 TAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR----------------------- 342
           + H   VT +        ++SA  D+ I++WD E+G                        
Sbjct: 14  SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL 73

Query: 343 ----------------NTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSG 386
                                        +            +V       +K +++ +G
Sbjct: 74  LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG 133

Query: 387 KTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH 428
               TF GH E+V     +     + +  ND+ + VW  +  
Sbjct: 134 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK 175

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.3 bits (191), Expect = 2e-16
 Identities = 40/184 (21%), Positives = 70/184 (38%), Gaps = 32/184 (17%)

Query: 57  RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116
           +Y+ +G+ D +V V+D +                    + +   GHK ++ S ++   D 
Sbjct: 218 KYIAAGSLDRAVRVWDSETG----------FLVERLDSENESGTGHKDSVYSVVFTR-DG 266

Query: 117 GLFVTGSYDHYVKVWDT-------------NCTRVVMNFKMPGKVYRTAMSPLAASHMLI 163
              V+GS D  VK+W+              + T  V        V   A +    +   I
Sbjct: 267 QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ---NDEYI 323

Query: 164 AAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEW-----ILVTGGCDGAIRFW 218
            +G++D  V   D  SG     L GHR+ +++V  +  S       +  TG  D   R W
Sbjct: 324 LSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 383

Query: 219 DIRR 222
             ++
Sbjct: 384 KYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.8 bits (174), Expect = 3e-14
 Identities = 65/389 (16%), Positives = 116/389 (29%), Gaps = 73/389 (18%)

Query: 42  HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRAT-DYEGGGHIAKHRSVFVVDKQHEH 100
           H   +  ++    +  YL +G  + +  VY V   +         A ++    ++     
Sbjct: 61  HTSVVCCVKFS-NDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118

Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASH 160
                I S  + P D     TG+ D  +++WD    ++VM  +   +   +       S 
Sbjct: 119 SSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF--PSG 175

Query: 161 MLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDI 220
             + +G+ D  VR+ D+ +G  S T     DG+ TV  S      +  G  D A+R WD 
Sbjct: 176 DKLVSGSGDRTVRIWDLRTGQCSLT-LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS 234

Query: 221 RRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSS 280
                   LD                     +       SV      +   +G+  R   
Sbjct: 235 ETGFLVERLDSENESG---------------TGHKDSVYSVVFTRDGQSVVSGSLDRSVK 279

Query: 281 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES 340
           +  +    +      P   + +     H   V  +  T++  Y+LS   D  +  WD +S
Sbjct: 280 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS 339

Query: 341 GRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVN 400
           G                P+                                 +GH   V 
Sbjct: 340 G---------------NPLL------------------------------MLQGHRNSVI 354

Query: 401 CCC------FSSQDQELYTGGNDRQILVW 423
                       +     TG  D +  +W
Sbjct: 355 SVAVANGSSLGPEYNVFATGSGDCKARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.5 bits (98), Expect = 8e-05
 Identities = 33/248 (13%), Positives = 72/248 (29%), Gaps = 28/248 (11%)

Query: 184 QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLL 243
                H   +  V++S   E++    GC+   + + +        L    +         
Sbjct: 56  HKSLDHTSVVCCVKFSNDGEYLAT--GCNKTTQVYRVSDGSLVARLSDDSAAN------- 106

Query: 244 KRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQD 303
           K   +++ S S   +  +              V  S  G+  A G+  + +    + ++ 
Sbjct: 107 KDPENLNTSSSPSSDLYI------------RSVCFSPDGKFLATGAEDRLIRIWDIENRK 154

Query: 304 RATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLAT 363
                 G    +   +         S S  R   +   R    +           + ++ 
Sbjct: 155 IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSP 214

Query: 364 TQDPAVVFVPCMTAVKAFDIWSGKTCLT-------FRGHYEYVNCCCFSSQDQELYTGGN 416
                +       AV+ +D  +G              GH + V    F+   Q + +G  
Sbjct: 215 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL 274

Query: 417 DRQILVWC 424
           DR + +W 
Sbjct: 275 DRSVKLWN 282

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.2 bits (183), Expect = 2e-15
 Identities = 24/119 (20%), Positives = 51/119 (42%), Gaps = 2/119 (1%)

Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASH 160
           GH+  I++  ++P +   F TGS D   +++D    + +M +     +        + S 
Sbjct: 224 GHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282

Query: 161 MLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
            L+ AG +D    + D      +  L+GH + +  +  +      + TG  D  ++ W+
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMA-VATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.8 bits (151), Expect = 2e-11
 Identities = 52/325 (16%), Positives = 88/325 (27%), Gaps = 67/325 (20%)

Query: 42  HKGSINSLQVDLTEERYLLSGASDSSV-------------------AVYDVQRATDYEGG 82
           H   I ++    T+ R L+S + D  +                    V     A      
Sbjct: 54  HLAKIYAMHWG-TDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112

Query: 83  GHIAKHRSVFVVD-KQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMN 141
                     + + K  E   + +   A      +               DT C    + 
Sbjct: 113 ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIE 172

Query: 142 FKMPGKVYRTAMSPLAASHM-----LIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTV 196
                  +      + +  +     L  +G  D   +L D+  G   QT +GH   I  +
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 232

Query: 197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKS---- 252
            +  +      TG  D   R +D+R               G         VS SKS    
Sbjct: 233 CFFPNGNA-FATGSDDATCRLFDLRADQELMTYSHDNIICG------ITSVSFSKSGRLL 285

Query: 253 LSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAV 312
           L+   + +       K                         L             H   V
Sbjct: 286 LAGYDDFNCNVWDALK-------------------ADRAGVL-----------AGHDNRV 315

Query: 313 TGLKVTEDGMYLLSAGSDSRIRLWD 337
           + L VT+DGM + +   DS +++W+
Sbjct: 316 SCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.7 bits (143), Expect = 2e-10
 Identities = 16/119 (13%), Positives = 38/119 (31%), Gaps = 3/119 (2%)

Query: 306 TAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQ 365
           T H   +  +    +G    +   D+  RL+D+ + +       +          ++ ++
Sbjct: 223 TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL--MTYSHDNIICGITSVSFSK 280

Query: 366 DPAVVFVPCMT-AVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 423
              ++           +D           GH   V+C   +     + TG  D  + +W
Sbjct: 281 SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.3 bits (95), Expect = 2e-04
 Identities = 13/51 (25%), Positives = 19/51 (37%)

Query: 378 VKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH 428
            K +D+  G    TF GH   +N  CF        TG +D    ++     
Sbjct: 208 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 72.5 bits (176), Expect = 1e-14
 Identities = 31/316 (9%), Positives = 73/316 (23%), Gaps = 11/316 (3%)

Query: 115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRL 174
                +  +Y + + V D     V  +  MP K           +            +  
Sbjct: 7   GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYG 66

Query: 175 CDIASGAI------SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRV 228
            D+ +         S         + +   S   + +  T      +    + +     V
Sbjct: 67  IDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEV 126

Query: 229 LDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKG 288
              +     +          +    +A   S         +     G    ++       
Sbjct: 127 FSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNR 186

Query: 289 SVRQRLHPGML-SSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVN 347
                         Q          T  +  +D     +A         D+++G+    +
Sbjct: 187 KGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK---TH 243

Query: 348 FETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQ 407
            +     T        +          +  +  +D+   K  +          C  F  +
Sbjct: 244 TQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRK-LIKAANLDHTYYCVAFDKK 302

Query: 408 DQELYTGGNDRQILVW 423
             +LY GG    + V+
Sbjct: 303 GDKLYLGGTFNDLAVF 318

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 49.0 bits (115), Expect = 5e-07
 Identities = 30/331 (9%), Positives = 81/331 (24%), Gaps = 24/331 (7%)

Query: 16  NSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQR 75
            ++ N +    +++  +  YK  V P K    +  +        +       +   D+  
Sbjct: 14  TNYPNNLHVVDVASDTV--YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT 71

Query: 76  ATDY----EGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVW 131
             +              RS++      +    YA  +    P              ++V+
Sbjct: 72  CKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVN----PTQRLNDHYVVKPPRLEVF 127

Query: 132 DTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD 191
            T         +      +  +   A    L  AG     +   D+ +G  +  L    +
Sbjct: 128 STADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGP---DIYKMDVKTGKYTVALPLR-N 183

Query: 192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISK 251
                  +    +                           ++ +  ++ P     +    
Sbjct: 184 WNRKGYSAPDVLYFWPHQSPRHEFSMLYT----------IARFKDDKQDPATADLLYGYL 233

Query: 252 SLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGA 311
           S+      +              G+R             R   +        +A      
Sbjct: 234 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHT 293

Query: 312 VTGLKVTEDGMYLLSAGSDSRIRLWDVESGR 342
              +   + G  L   G+ + + +++ ++  
Sbjct: 294 YYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE 324

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 39.7 bits (91), Expect = 5e-04
 Identities = 16/119 (13%), Positives = 32/119 (26%), Gaps = 13/119 (10%)

Query: 314 GLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT-SKPIQLATTQDPAVVFV 372
           G  +     Y++     + + + DV S        ++  +     P       D    +V
Sbjct: 1   GPALKAGHEYMIVTNYPNNLHVVDVASDTVY----KSCVMPDKFGPGTAMMAPDNRTAYV 56

Query: 373 PCMT--AVKAFDIWSGK------TCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 423
                  +   D+ + K                 +     S   +E+Y   N  Q L  
Sbjct: 57  LNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLND 115

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 66.0 bits (159), Expect = 2e-12
 Identities = 22/312 (7%), Positives = 66/312 (21%), Gaps = 14/312 (4%)

Query: 118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYR-TAMSPLAASHMLIAAGTEDVQVRLCD 176
             +  +    + V DT    V     +                 +  A   +   +   D
Sbjct: 3   YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62

Query: 177 IASGAISQTLSGHRDGIMT-----VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQ 231
           + +G     +                 S   + + +              +     + D 
Sbjct: 63  LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA 122

Query: 232 SQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVR 291
                 +     ++   ++ +    +   +           G  V    +    A+   +
Sbjct: 123 ETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQ 182

Query: 292 QRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV 351
             +       +        A       +D          + +   D+E+G   +      
Sbjct: 183 PDVLAVWNQHESS---GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR-- 237

Query: 352 RLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQEL 411
                                     +++FD+    +                S+    +
Sbjct: 238 --IMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTV 294

Query: 412 YTGGNDRQILVW 423
           + GG    +  +
Sbjct: 295 WLGGALGDLAAY 306

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.1 bits (154), Expect = 9e-12
 Identities = 48/374 (12%), Positives = 94/374 (25%), Gaps = 44/374 (11%)

Query: 57  RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116
             +    ++  V +Y+        G   +  H             H   ++   W P D+
Sbjct: 20  TQIAICPNNHEVHIYEK------SGNKWVQVHEL---------KEHNGQVTGVDWAP-DS 63

Query: 117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCD 176
              VT   D    VW            +            A +    A G+    + +C 
Sbjct: 64  NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICY 123

Query: 177 IASGAISQTLSGHRDGIM---TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQ 233
                        +  I           +  +L  G CD   R +           ++  
Sbjct: 124 FEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEV----EERP 179

Query: 234 SQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQR 293
           +       +   ++    S S G    V   A   R A       S    +         
Sbjct: 180 APTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW-----VSHDSTV-------CL 227

Query: 294 LHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRL 353
                  +     +    +  +    +   L++AG D    L+  +S    L    +   
Sbjct: 228 ADADKKMAVATLASETLPLLAVTFITESS-LVAAGHDCFPVLFTYDSAAGKL----SFGG 282

Query: 354 QTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQ---- 409
           +   P Q +     A      +    + +  +         H   V+     S  +    
Sbjct: 283 RLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCS 342

Query: 410 ELYTGGNDRQILVW 423
           +  T G D  + +W
Sbjct: 343 QFCTTGMDGGMSIW 356

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.7 bits (114), Expect = 8e-07
 Identities = 36/329 (10%), Positives = 91/329 (27%), Gaps = 26/329 (7%)

Query: 42  HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG 101
           H G +  +     +   +++  +D +  V+ ++  T       +  +R+   V       
Sbjct: 50  HNGQVTGVDWA-PDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEK 108

Query: 102 HKYAI----SSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLA 157
                      +I Y      +    +                N  +           + 
Sbjct: 109 KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIF 168

Query: 158 ASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRF 217
           ++++               +  G +    S     +  V +S +   +         +  
Sbjct: 169 SAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD-STVCL 227

Query: 218 WDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVR 277
            D  +      L          P L    ++ S  ++AG +           +   +   
Sbjct: 228 ADADKKMAVATLASETL-----PLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGG 282

Query: 278 QSSVGRIPAKGSVRQRLHPGMLSSQDRA-----------TAHYGAVTGLKVTEDG----M 322
           +  V +  ++  +  R     L  +  +           + H  +V+ + V   G     
Sbjct: 283 RLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCS 342

Query: 323 YLLSAGSDSRIRLWDVESGRNTLVNFETV 351
              + G D  + +WDV S  + L + + V
Sbjct: 343 QFCTTGMDGGMSIWDVRSLESALKDLKIV 371

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.8 bits (109), Expect = 3e-06
 Identities = 34/279 (12%), Positives = 69/279 (24%), Gaps = 45/279 (16%)

Query: 162 LIAAGTEDVQVRLCDIASGAISQ--TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
            IA    + +V + + +     Q   L  H   +  V+W+  S   +VT G D     W 
Sbjct: 21  QIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR-IVTCGTDRNAYVWT 79

Query: 220 IRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQS 279
           ++       L   +                           V+    +K+ A G+G R  
Sbjct: 80  LKGRTWKPTLVILRIN--------------------RAARCVRWAPNEKKFAVGSGSRVI 119

Query: 280 SVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVE 339
           S+     +       H                V  L    + + L +   D + R++   
Sbjct: 120 SICYFEQENDWWVCKHIKK--------PIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAY 171

Query: 340 SGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFD------------IWSGK 387
                     T         +L      +  +V  +                   +    
Sbjct: 172 IKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD 231

Query: 388 TCLTFRGHYEYVN--CCCFSSQDQELYTGGNDRQILVWC 424
             +                   +  L   G+D   +++ 
Sbjct: 232 KKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFT 270

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.8 bits (109), Expect = 3e-06
 Identities = 10/123 (8%), Positives = 27/123 (21%), Gaps = 43/123 (34%)

Query: 306 TAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQ 365
           +     ++     +D   +    ++  + +++    +   V+                  
Sbjct: 4   SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVH------------------ 45

Query: 366 DPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP 425
                                      + H   V    ++     + T G DR   VW  
Sbjct: 46  -------------------------ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 80

Query: 426 SRH 428
              
Sbjct: 81  KGR 83

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.8 bits (83), Expect = 0.004
 Identities = 16/146 (10%), Positives = 38/146 (26%), Gaps = 11/146 (7%)

Query: 306 TAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQ 365
             H G VTG+    D   +++ G+D    +W ++              + ++ ++     
Sbjct: 48  KEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVR----W 103

Query: 366 DPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEY-------VNCCCFSSQDQELYTGGNDR 418
            P        +  +   I   +    +             V    +      L  G  D 
Sbjct: 104 APNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF 163

Query: 419 QILVWCPSRHISDGVDAGPMQDQDNW 444
           +  ++       +   A         
Sbjct: 164 KCRIFSAYIKEVEERPAPTPWGSKMP 189

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (149), Expect = 2e-11
 Identities = 55/318 (17%), Positives = 110/318 (34%), Gaps = 56/318 (17%)

Query: 40  SPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRAT--------------------DY 79
           S     +  LQ D   ++ ++SG  D+++ ++D                           
Sbjct: 12  SETSKGVYCLQYD---DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVI 68

Query: 80  EGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVV 139
             G   +  R   V   +  +   +   + +    + G+ VT S D  + VWD      +
Sbjct: 69  ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI 128

Query: 140 MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS 199
              ++    +R A++ +      I + + D  +++ + ++    +TL+GH+     +   
Sbjct: 129 TLRRVL-VGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK---RGIACL 184

Query: 200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNS 259
              + ++V+G  D  IR WDI    C RVL+      G    +   +    + +S   + 
Sbjct: 185 QYRDRLVVSGSSDNTIRLWDIECGACLRVLE------GHEELVRCIRFDNKRIVSGAYDG 238

Query: 260 SVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE 319
            +K             V        P   +    L             H G V  L+   
Sbjct: 239 KIK-------------VWDLVAALDPRAPAGTLCLR--------TLVEHSGRVFRLQF-- 275

Query: 320 DGMYLLSAGSDSRIRLWD 337
           D   ++S+  D  I +WD
Sbjct: 276 DEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (129), Expect = 7e-09
 Identities = 41/274 (14%), Positives = 83/274 (30%), Gaps = 8/274 (2%)

Query: 156 LAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS--TSSEWILVTGGCDG 213
           L      I +G  D  +++ D  +    + L+GH   ++ +++           +     
Sbjct: 21  LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVW 80

Query: 214 AIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANG 273
            +   ++              +      +   K            + +  R         
Sbjct: 81  DVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 140

Query: 274 NGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRI 333
             V       I +    R        + +   T +        +      ++S  SD+ I
Sbjct: 141 VNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTI 200

Query: 334 RLWDVESG---RNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCL 390
           RLWD+E G   R    + E VR       ++ +      + V  + A       +G  CL
Sbjct: 201 RLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCL 260

Query: 391 -TFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 423
            T   H   V    F   + ++ +  +D  IL+W
Sbjct: 261 RTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (106), Expect = 5e-06
 Identities = 43/245 (17%), Positives = 73/245 (29%), Gaps = 15/245 (6%)

Query: 184 QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQS-----QLGR 238
              S    G+  +++       +V+G  D  I+ WD     C R+L          Q   
Sbjct: 9   HCRSETSKGVYCLQYDDQ---KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65

Query: 239 RPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGM 298
           R  +     S  +         +        +          +       S+        
Sbjct: 66  RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP 125

Query: 299 LSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKP 358
                R            V  D  Y++SA  D  I++W+  +       F        + 
Sbjct: 126 TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE-----FVRTLNGHKRG 180

Query: 359 IQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDR 418
           I     +D  VV       ++ +DI  G       GH E V C  F   ++ + +G  D 
Sbjct: 181 IACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDG 238

Query: 419 QILVW 423
           +I VW
Sbjct: 239 KIKVW 243

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 7e-04
 Identities = 17/99 (17%), Positives = 36/99 (36%), Gaps = 11/99 (11%)

Query: 34  NYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFV 93
                +   +G    ++    + + ++SGA D  + V+D+  A D          R++  
Sbjct: 206 ECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL-- 263

Query: 94  VDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWD 132
                   H   +    +   D    V+ S+D  + +WD
Sbjct: 264 ------VEHSGRVFRLQF---DEFQIVSSSHDDTILIWD 293

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.1 bits (141), Expect = 3e-10
 Identities = 46/415 (11%), Positives = 107/415 (25%), Gaps = 71/415 (17%)

Query: 42  HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG 101
           H   I S+        + +S + D  + V+D +   +         H        +    
Sbjct: 13  HDADIFSVSAC---NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFV-----HKSGLH 64

Query: 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTN-----------CTRVVMNFKMPGKVYR 150
           H   + +      +  L  T S+   +  +                 ++ +       + 
Sbjct: 65  HVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA 124

Query: 151 TAMSP--LAASHMLIAAGTEDVQVRLCDI-ASGAISQTLSGHRDGIMTVEWST------- 200
                         + A        +         S +L+ +    + ++ +        
Sbjct: 125 LKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 184

Query: 201 --------SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKS 252
                   S   ++ TG  +G ++  ++         +   S +     +   K S   S
Sbjct: 185 QFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS 244

Query: 253 LSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAV 312
           L                  + +    +       +      +      +     AH   V
Sbjct: 245 L------------LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWV 292

Query: 313 TGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT----SKPIQLATTQDPA 368
             L   + G  L SAG D ++R WDV++           R+ T       I++       
Sbjct: 293 MSLSFNDSGETLCSAGWDGKLRFWDVKTKE---------RITTLNMHCDDIEIEED---I 340

Query: 369 VVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 423
           +       ++    ++  K                 +  ++ L     DR I  +
Sbjct: 341 LAVDEHGDSLAEPGVFDVKFLKKG------WRSGMGADLNESLCCVCLDRSIRWF 389

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 1e-07
 Identities = 38/342 (11%), Positives = 86/342 (25%), Gaps = 56/342 (16%)

Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASH 160
            H   I S           V+ S D Y+KVWD                            
Sbjct: 12  AHDADIFSVSACN---SFTVSCSGDGYLKVWDNK-------------------------- 42

Query: 161 MLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDI 220
                   D +       S  + ++   H D +  +E       ++ T    G + F+ I
Sbjct: 43  ------LLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRI 96

Query: 221 RRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSS 280
            R    + +   +  L           ++    S                      +   
Sbjct: 97  TREDETKKVIFEKLDLLDSDMKKHSFWALKWGAS-NDRLLSHRLVATDVKGTTYIWKFHP 155

Query: 281 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVES 340
                   ++       +  + +         T + ++E G  + +  ++  +++ ++ +
Sbjct: 156 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST 214

Query: 341 GRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIW---------------- 384
            R          +  +     +    P    +       +F                   
Sbjct: 215 LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSV 274

Query: 385 ---SGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 423
              S +  L    H  +V    F+   + L + G D ++  W
Sbjct: 275 PTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW 316

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 1e-05
 Identities = 34/221 (15%), Positives = 65/221 (29%), Gaps = 13/221 (5%)

Query: 20  NRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDY 79
           N +  +   TL+L    E          S  VD++E   + +G ++ +V + ++      
Sbjct: 161 NSLTLNWSPTLELQGTVESPMTPSQFATS--VDISERGLIATGFNNGTVQISELSTLRPL 218

Query: 80  EGGGHIAKHRSVF-----VVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTN 134
                     +       V           A  S  +  +       G     + V   +
Sbjct: 219 YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHS 278

Query: 135 CTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM 194
               +  F     V   + +    S   + +   D ++R  D+ +     TL+ H D I 
Sbjct: 279 SQASLGEFAHSSWVMSLSFND---SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE 335

Query: 195 TVEWS---TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQS 232
             E           L   G           R+G    L++S
Sbjct: 336 IEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNES 376

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 29/262 (11%), Positives = 61/262 (23%), Gaps = 37/262 (14%)

Query: 184 QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLL 243
                H   I +V    S     V+   DG ++ WD +        D+S S    +  L 
Sbjct: 8   NAGKAHDADIFSVSACNS---FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLH 64

Query: 244 KRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQD 303
              V  +    A +   V        ++    +    + R      V       + S   
Sbjct: 65  HVDVLQAIERDAFELCLVA------TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMK 118

Query: 304 RATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLAT 363
           + +                 L++        +W      +   +                
Sbjct: 119 KHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL--------------- 163

Query: 364 TQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 423
                       T   +  +    T  +     ++      S     + TG N+  + + 
Sbjct: 164 ------------TLNWSPTLELQGTVESPMTPSQFATSVDISE-RGLIATGFNNGTVQIS 210

Query: 424 CPSRHISDGVDAGPMQDQDNWS 445
             S               +N +
Sbjct: 211 ELSTLRPLYNFESQHSMINNSN 232

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (90), Expect = 6e-04
 Identities = 10/107 (9%), Positives = 27/107 (25%), Gaps = 12/107 (11%)

Query: 299 LSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKP 358
           +++ +   AH   +  +       + +S   D  +++WD +   N     ++      K 
Sbjct: 4   IATANAGKAHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 61

Query: 359 IQLATTQDPAVVFVPCMTA----------VKAFDIWSGKTCLTFRGH 395
                    A+                  +  + I            
Sbjct: 62  GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFE 108

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.2 bits (131), Expect = 5e-09
 Identities = 33/310 (10%), Positives = 81/310 (26%), Gaps = 34/310 (10%)

Query: 37  EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDK 96
           +I    K  I+ +++    +  LL  + D S+ VY                      VD 
Sbjct: 5   QIEQAPKDYISDIKII-PSKSLLLITSWDGSLTVYKFDIQAK--------------NVDL 49

Query: 97  QHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTN----CTRVVMNFKMPGKVYRTA 152
                +K+ +    +          G+    +   D         +  N    G      
Sbjct: 50  LQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICK 109

Query: 153 MSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCD 212
                          E +  R       A+    S +      +    ++   L+ G  +
Sbjct: 110 YGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNN 169

Query: 213 GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSAN 272
             ++++ +          +      +   +            +  +  V       +  +
Sbjct: 170 SQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDD 229

Query: 273 GNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSR 332
            N  ++ +                         T     V  ++ +    +L +AGSD  
Sbjct: 230 YNSSKRFAFRCHRLNLKD---------------TNLAYPVNSIEFSPRHKFLYTAGSDGI 274

Query: 333 IRLWDVESGR 342
           I  W++++ +
Sbjct: 275 ISCWNLQTRK 284

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.3 bits (113), Expect = 9e-07
 Identities = 39/343 (11%), Positives = 94/343 (27%), Gaps = 44/343 (12%)

Query: 97  QHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWD----TNCTRVVMNFKMPGKVYRTA 152
           Q E   K  IS     P    L +  S+D  + V+          ++ + +    +    
Sbjct: 5   QIEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63

Query: 153 MSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCD 212
                 + + I  GT   ++   D+      Q L+ +   +         +  L+    D
Sbjct: 64  FID--NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD 121

Query: 213 GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSAN 272
           G I   D R  G   +  ++ +                       N+ VK +     + +
Sbjct: 122 GLIEVIDPRNYGDGVIAVKNLN---------------------SNNTKVKNKIFTMDTNS 160

Query: 273 GNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSR 332
              +   +  ++            G     + +   Y       + ++      +  D R
Sbjct: 161 SRLIVGMNNSQVQWFRLPLCEDDNGT---IEESGLKYQIRDVALLPKEQEGYACSSIDGR 217

Query: 333 IRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDP---AVVFVPCMT---------AVKA 380
           + +   +   +   + +    +  +     T       ++ F P             +  
Sbjct: 218 VAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISC 277

Query: 381 FDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 423
           +++ + K    F    E  +    +  D  L    +D      
Sbjct: 278 WNLQTRKKIKNFAKFNE-DSVVKIACSDNILCLATSDDTFKTN 319

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.6 bits (106), Expect = 6e-06
 Identities = 29/178 (16%), Positives = 56/178 (31%), Gaps = 10/178 (5%)

Query: 20  NRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDY 79
           ++V+  RL   +  N     S  K  I  + +   E+      + D  VAV       D 
Sbjct: 170 SQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDD 229

Query: 80  EGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVV 139
                    R   +  K     +     ++I +        T   D  +  W+    + +
Sbjct: 230 YNSSKRFAFRCHRLNLKDTNLAYPV---NSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI 286

Query: 140 MNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVE 197
            NF    +     ++    S  ++   T D   +     + AI QT+  +   I  + 
Sbjct: 287 KNFAKFNEDSVVKIAC---SDNILCLATSDDTFKT----NAAIDQTIELNASSIYIIF 337

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (96), Expect = 1e-04
 Identities = 10/122 (8%), Positives = 23/122 (18%), Gaps = 42/122 (34%)

Query: 307 AHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQD 366
           A    ++ +K+      LL    D  + ++  +                           
Sbjct: 9   APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN---------------------- 46

Query: 367 PAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS 426
                                  L    +   + CC F          G  +  ++    
Sbjct: 47  --------------------VDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86

Query: 427 RH 428
             
Sbjct: 87  IG 88

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 1e-08
 Identities = 53/338 (15%), Positives = 103/338 (30%), Gaps = 28/338 (8%)

Query: 100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAA 158
            GH   + + + +       V+GS D+ +KVW     + +       G V+ + M     
Sbjct: 13  KGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNII 70

Query: 159 SHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFW 218
                    +               + +        TV      E  +V+G  D  +R W
Sbjct: 71  ISGSTDRTLKVWNAETG--------ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVW 122

Query: 219 DIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQ 278
           DI    C  VL    + +       +R VS +                     + N V  
Sbjct: 123 DIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS 182

Query: 279 SSV-GRIPAKGSVRQRLH---PGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIR 334
               G     GS+   +        +     T H    +G+++ ++   L+S  +DS ++
Sbjct: 183 LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVK 240

Query: 335 LWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFR- 393
           +WD++      +       +    +         V+       VK +D+ +G+       
Sbjct: 241 IWDIK--TGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVT 298

Query: 394 ----GHYEYVNCCCFSSQDQELYTGGND----RQILVW 423
               G    V     S+       G  +     ++LV 
Sbjct: 299 LESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 4e-07
 Identities = 48/344 (13%), Positives = 98/344 (28%), Gaps = 63/344 (18%)

Query: 42  HKGSINS-LQVDLTEERYLLSGASDSSVAVYDVQ---------------RATDYEGGGHI 85
           H   + + LQ        ++SG+ D+++ V+                   ++       I
Sbjct: 15  HDDHVITCLQFC---GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIII 71

Query: 86  AKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV-----TGSYDHYVKVWDTNCTRVVM 140
           +      +     E G            V           +GS D  ++VWD    + + 
Sbjct: 72  SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLH 131

Query: 141 NFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWST 200
                    R            + +G  D  V++ D  +     TL GH      V    
Sbjct: 132 VLMGHVAAVRCVQYD----GRRVVSGAYDFMVKVWDPETETCLHTLQGHT---NRVYSLQ 184

Query: 201 SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSS 260
                +V+G  D +IR WD+    C   L   QS        L   + +  ++    N+ 
Sbjct: 185 FDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--------LTSGMELKDNILVSGNAD 236

Query: 261 VKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDR---------------- 304
              +    ++       Q       A   ++   +  + SS D                 
Sbjct: 237 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNL 296

Query: 305 ----ATAHYGAVTGLKVTEDGMYLLSAGSD----SRIRLWDVES 340
               +    G V  ++ +   +       +    +++ + D + 
Sbjct: 297 VTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.0 bits (125), Expect = 3e-08
 Identities = 39/324 (12%), Positives = 90/324 (27%), Gaps = 26/324 (8%)

Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAAS 159
           GH  ++ + + +  +    +TG+ D  ++V+D+   + ++      G V+    +     
Sbjct: 10  GHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH---G 64

Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
            +L++  T+                    +            +   +VTG  D  +  W 
Sbjct: 65  GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 124

Query: 220 IRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQS 279
           + +     V D  +            +      +  G  +SV+  +             +
Sbjct: 125 LPKESS--VPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNT 182

Query: 280 SVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVE 339
            +    A+      L             H                +SA  D+ IR+WD+E
Sbjct: 183 LIVWDVAQMKCLYILSGHTDRIYSTIYDHE-----------RKRCISASMDTTIRIWDLE 231

Query: 340 SGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYV 399
           +G           L           +      V            +      F  H+  +
Sbjct: 232 NGELMYTLQGHTALVG-------LLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNL 284

Query: 400 NCCCFSSQDQELYTGGNDRQILVW 423
           +          +   G++ Q  ++
Sbjct: 285 SAITTFYVSDNILVSGSENQFNIY 308

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 1e-07
 Identities = 50/407 (12%), Positives = 114/407 (28%), Gaps = 92/407 (22%)

Query: 42  HKGSINS-LQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEH 100
           H  S+ + LQ +   + Y+++GA D  + VYD              K             
Sbjct: 11  HMTSVITCLQFE---DNYVITGADDKMIRVYDSIN----------KKFLLQL-------S 50

Query: 101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASH 160
           GH   + +  +     G+ V+GS D  V+VWD         F+      R        + 
Sbjct: 51  GHDGGVWALKYAH--GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI 108

Query: 161 MLIAAGTEDVQVRLCDIASGAISQTLSGHRDG--------------------IMTVEWST 200
             I  G+ D  + +  +   +         D                     + +V   +
Sbjct: 109 KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS 168

Query: 201 SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLK----RKVSISKSLSAG 256
               I+V+G  D  +  WD+ +  C  +L     ++       +       S+  ++   
Sbjct: 169 GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIW 228

Query: 257 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLK 316
              + +     +      G+ + S   + +  +              + + H+  ++ + 
Sbjct: 229 DLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAIT 288

Query: 317 VTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMT 376
                  +L +GS+++  ++++ SG+                                  
Sbjct: 289 TFYVSDNILVSGSENQFNIYNLRSGKLVHA------------------------------ 318

Query: 377 AVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 423
                               + +    F      +     D Q  + 
Sbjct: 319 --------------NILKDADQIWSVNFKG-KTLVAAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (96), Expect = 1e-04
 Identities = 18/133 (13%), Positives = 47/133 (35%), Gaps = 7/133 (5%)

Query: 89  RSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKV 148
           R   + + +  +  +   +      +     V+ + D  ++ WD N      ++      
Sbjct: 226 RIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLS 285

Query: 149 YRTAMSPLAASHMLIAAGTEDVQVRLCDIASGA-ISQTLSGHRDGIMTVEWSTSSEWILV 207
             T       S  ++ +G+E+ Q  + ++ SG  +   +    D I +V +    + ++ 
Sbjct: 286 AITTFYV---SDNILVSGSEN-QFNIYNLRSGKLVHANILKDADQIWSVNF--KGKTLVA 339

Query: 208 TGGCDGAIRFWDI 220
               DG      +
Sbjct: 340 AVEKDGQSFLEIL 352

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 185 TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLD 230
           TL GH   ++T        + ++TG  D  IR +D         L 
Sbjct: 7   TLRGHMTSVITC-LQFEDNY-VITGADDKMIRVYDSINKKFLLQLS 50

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 50.6 bits (119), Expect = 2e-07
 Identities = 14/174 (8%), Positives = 43/174 (24%), Gaps = 11/174 (6%)

Query: 57  RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT 116
           + L   +  S     D                   FV+       +   +          
Sbjct: 191 KNLYYLSYRSLDPSPDRVV-----LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAG 245

Query: 117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCD 176
              +   Y       + +     M   +   +   ++              E   +   D
Sbjct: 246 EYDLNDMYKRSSP-INVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYD 304

Query: 177 IASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLD 230
           + +      ++  ++ +  +  S   +  ++    DG I  + + +    R ++
Sbjct: 305 VKTR----KVTEVKNNLTDLRLSADRKT-VMVRKDDGKIYTFPLEKPEDERTVE 353

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 45.6 bits (106), Expect = 6e-06
 Identities = 21/231 (9%), Positives = 51/231 (22%), Gaps = 28/231 (12%)

Query: 111 WYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV 170
           +          G     + V+D    ++          Y  A          +   +   
Sbjct: 144 YGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDA---DSKNLYYLSYRS 200

Query: 171 QVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLD 230
                D      S  +      I  +  S +   ++       A  +           ++
Sbjct: 201 LDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPIN 260

Query: 231 QSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSV 290
                     PL    +  S                                        
Sbjct: 261 VDPGDYRMIIPLESSILIYS------------------------VPVHGEFAAYYQGAPE 296

Query: 291 RQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESG 341
           +  L    + ++ + T     +T L+++ D   ++    D +I  + +E  
Sbjct: 297 KGVLLKYDVKTR-KVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKP 346

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (116), Expect = 3e-07
 Identities = 16/127 (12%), Positives = 42/127 (33%), Gaps = 3/127 (2%)

Query: 97  QHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPL 156
           +  H     +    + P      +T   D  +  +D      +   +   +  +  +  L
Sbjct: 199 RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFAL 258

Query: 157 AASHM-LIAAGTEDVQVRLCDIASGAISQTLSGHRD--GIMTVEWSTSSEWILVTGGCDG 213
           +       A    D  +R+ D+ +    Q  +  +   G   V    +    +++   DG
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG 318

Query: 214 AIRFWDI 220
            + F+++
Sbjct: 319 TLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (93), Expect = 2e-04
 Identities = 33/282 (11%), Positives = 69/282 (24%), Gaps = 33/282 (11%)

Query: 90  SVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPG--- 146
            +       +      +S   + P    +        +V+  D   ++V    +  G   
Sbjct: 7   EIIPPQPSTQRNFTTHLS---YDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGS 63

Query: 147 -KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL--------SGHRDGIMTVE 197
             V     SP       + +G E  +V +        S ++              I  + 
Sbjct: 64  SVVTTVKFSP-IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDIS 122

Query: 198 WSTSS-EWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAG 256
           W        +V  G D    F           +     ++        R +        G
Sbjct: 123 WDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDG 182

Query: 257 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDR------------ 304
                +    +  +++    +Q S  R              + S +              
Sbjct: 183 SVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK 242

Query: 305 ----ATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGR 342
                              D     + G+D+ IR+WDV + +
Sbjct: 243 YIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSK 284

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 47.3 bits (110), Expect = 1e-06
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 180 GAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQS 234
           G+I Q   GH   I  +  S   +  L +   +G I  WDI      RV     +
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKT-LFSADAEGHINSWDISTGISNRVFPDVHA 55

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.2 bits (102), Expect = 1e-05
 Identities = 33/331 (9%), Positives = 75/331 (22%), Gaps = 51/331 (15%)

Query: 100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAAS 159
           +GH  AI++      D     +   + ++  WD +       F        T +   +  
Sbjct: 9   YGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG 67

Query: 160 HMLIAAGTEDV-QVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFW 218
            +   +  + +  V        +     +      + +  S   +  +       AI   
Sbjct: 68  DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSH 127

Query: 219 DIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQ 278
                          +    +  +          +     +SV         A    V  
Sbjct: 128 GKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAF 187

Query: 279 SSVGRIPAKGS------VRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSR 332
           S+ G                  +   L+  +  T H   V  +  + D + L +   D+ 
Sbjct: 188 SNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS 247

Query: 333 IRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTF 392
           + +W++                                              S    +  
Sbjct: 248 VIVWNMNKP-------------------------------------------SDHPIIIK 264

Query: 393 RGHYEYVNCCCFSSQDQELYTGGNDRQILVW 423
             H            +  + + G D  I  W
Sbjct: 265 GAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.3 bits (97), Expect = 7e-05
 Identities = 19/127 (14%), Positives = 43/127 (33%), Gaps = 5/127 (3%)

Query: 97  QHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPL 156
                H   I+S  +      L  T      +     N   +           + A    
Sbjct: 173 VKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSW 232

Query: 157 AASHMLIAAGTEDVQVRLCDIASGAISQTL---SGHRDGIMTVEWSTSSEWILVTGGCDG 213
           +  ++ +A G+ D  V + ++   +    +   +     + +V W   +   +V+ G D 
Sbjct: 233 SPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET--TIVSAGQDS 290

Query: 214 AIRFWDI 220
            I+FW++
Sbjct: 291 NIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.0 bits (91), Expect = 4e-04
 Identities = 35/299 (11%), Positives = 79/299 (26%), Gaps = 14/299 (4%)

Query: 42  HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQ--RATDYEGGGHIAKHRSVFVVDKQHE 99
           H  +I +L     + + L S  ++  +  +D+    +       H      +    K   
Sbjct: 11  HNKAITALSSS-ADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL 69

Query: 100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAAS 159
               +     +     +G+    S         +    + ++      V          S
Sbjct: 70  FTVSWDDHLKVVPAGGSGV---DSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYS 126

Query: 160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD 219
           H  +             +++      + G    +   + S +S   + T      I    
Sbjct: 127 HGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVA 186

Query: 220 IRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQS 279
               G F     +  Q  +  P            ++    + K         N      S
Sbjct: 187 FSNNGAFL---VATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGS 243

Query: 280 SVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDV 338
               +     +   ++           AH  +     +  +   ++SAG DS I+ W+V
Sbjct: 244 LDNSV-----IVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.9 bits (109), Expect = 2e-06
 Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 3/91 (3%)

Query: 131 WDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIAS-GAISQTLSGH 189
                 R      +  K      +       L+A G+ D  + +  +     I + L+ H
Sbjct: 198 TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH 257

Query: 190 RDGIMTVEWSTSSEWILVTGGCDGAIRFWDI 220
           +DG+  + W T S   LV+ G D  I+ W++
Sbjct: 258 KDGVNNLLWETPS--TLVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.0 bits (99), Expect = 3e-05
 Identities = 34/330 (10%), Positives = 78/330 (23%), Gaps = 61/330 (18%)

Query: 100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT------RVVMNFKMPGKVYRTAM 153
            GH   I++    P      ++GSYD  +  W ++         +V       + Y +  
Sbjct: 10  SGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSIS 64

Query: 154 SPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDG 213
                    I       Q ++    +   +  L+   D ++   ++      +       
Sbjct: 65  WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGS 124

Query: 214 AIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANG 273
           A+       A      +  Q        +     +  ++  +  + S            G
Sbjct: 125 AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMG 184

Query: 274 NGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRI 333
             +             V+        S  +  +         +   +   + +   D+ I
Sbjct: 185 KILLY-----DLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNI 239

Query: 334 RLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFR 393
            ++ V+                                               K      
Sbjct: 240 FIYSVKRP--------------------------------------------MKIIKALN 255

Query: 394 GHYEYVNCCCFSSQDQELYTGGNDRQILVW 423
            H + VN   + +    L + G D  I  W
Sbjct: 256 AHKDGVNNLLWET-PSTLVSSGADACIKRW 284

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.2 bits (89), Expect = 6e-04
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 5/38 (13%)

Query: 184 QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR 221
           +T+SGH  GI  +  +      L++G  DG I  W   
Sbjct: 7   KTISGHNKGITALTVNP-----LISGSYDGRIMEWSSS 39

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.2 bits (84), Expect = 0.002
 Identities = 35/307 (11%), Positives = 87/307 (28%), Gaps = 42/307 (13%)

Query: 42  HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQ----------RATDYEGGGHIAKHRSV 91
           H   I +L V+      L+SG+ D  +  +              + D       +     
Sbjct: 12  HNKGITALTVN-----PLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWD 66

Query: 92  FVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRT 151
             +       H++     +    + G     + D  + +  +    ++ + ++       
Sbjct: 67  DTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAV 126

Query: 152 AMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGC 211
           ++S    +++ +     +                 +  R     +  S S  +I      
Sbjct: 127 SLSQ---NYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVM 183

Query: 212 DGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSA 271
              + +    R           S++         K +  + +     ++          +
Sbjct: 184 GKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVAT---------GS 234

Query: 272 NGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS 331
               +   SV R      + + L+           AH   V  L        L+S+G+D+
Sbjct: 235 LDTNIFIYSVKR---PMKIIKALN-----------AHKDGVNNLLWETPS-TLVSSGADA 279

Query: 332 RIRLWDV 338
            I+ W+V
Sbjct: 280 CIKRWNV 286

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 3e-06
 Identities = 39/339 (11%), Positives = 77/339 (22%), Gaps = 64/339 (18%)

Query: 98  HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTN------CTRVVMNFKMPGKVYRT 151
           +   H   + +       T    TG     VKVWD +          +        +   
Sbjct: 46  NTLNHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSC 103

Query: 152 AMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGC 211
            + P       +  G E   + + D+A+                   + S +  +    C
Sbjct: 104 KLLP---DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCC 160

Query: 212 DGAIRFWDIRRAG-----CFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAP 266
                                  D +                +  ++ +      +    
Sbjct: 161 SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ 220

Query: 267 QKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQD--RATAHYGAVTGLKVTEDGMYL 324
              ++    +     G   A G     +    ++  D  +   H   V  LK    G + 
Sbjct: 221 HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWF 280

Query: 325 LSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIW 384
           +S G D+ +  W    G                                           
Sbjct: 281 VSTGKDNLLNAWRTPYGA------------------------------------------ 298

Query: 385 SGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVW 423
                +        V  C  S  D+ + TG  D++  V+
Sbjct: 299 ----SIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 3e-06
 Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 162 LIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDI 220
              +  +D  +       GA           +++ + S   ++I VTG  D     +++
Sbjct: 279 WFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYI-VTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 1e-05
 Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 4/90 (4%)

Query: 88  HRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK 147
              V   DK   H H+  + S  +       FV+   D+ +  W T     +   K    
Sbjct: 250 VLHVNKPDKYQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSS 308

Query: 148 VYRTAMSPLAASHMLIAAGTEDVQVRLCDI 177
           V    +S        I  G+ D +  + ++
Sbjct: 309 VLSCDISV---DDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 9e-05
 Identities = 38/302 (12%), Positives = 91/302 (30%), Gaps = 21/302 (6%)

Query: 42  HKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG 101
           H   + ++ +     R++ +G     V V+D+                +   V +     
Sbjct: 50  HGEVVCAVTIS-NPTRHVYTG-GKGCVKVWDIS------------HPGNKSPVSQLDCLN 95

Query: 102 HKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHM 161
               I S    P D    + G     + +WD       +  ++           ++    
Sbjct: 96  RDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK 154

Query: 162 LIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIR 221
           +  +   D  + + D+ +  + +   GH DG   ++ S      L TGG D  +R WD+R
Sbjct: 155 VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISND-GTKLWTGGLDNTVRSWDLR 213

Query: 222 RAGCFRVLDQSQSQLG---RRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQ 278
                +  D +                    S ++     +           +    ++ 
Sbjct: 214 EGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKF 273

Query: 279 SSVGRIPAKGSV--RQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW 336
           +  G+                   +    +    +V    ++ D  Y+++   D +  ++
Sbjct: 274 AYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVY 333

Query: 337 DV 338
           +V
Sbjct: 334 EV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 14/137 (10%), Positives = 30/137 (21%), Gaps = 41/137 (29%)

Query: 308 HYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDP 367
           H   V  + ++    ++ + G    +++WD+    N                        
Sbjct: 50  HGEVVCAVTISNPTRHVYT-GGKGCVKVWDISHPGN------------------------ 84

Query: 368 AVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSR 427
                            S  + L       Y+  C        L  GG    + +W  + 
Sbjct: 85  ----------------KSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA 128

Query: 428 HISDGVDAGPMQDQDNW 444
                           +
Sbjct: 129 PTPRIKAELTSSAPACY 145

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.3 bits (109), Expect = 4e-06
 Identities = 12/119 (10%), Positives = 31/119 (26%), Gaps = 8/119 (6%)

Query: 118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI 177
             VT      + + D +   +         V+ + +S    S   +     D +V + D+
Sbjct: 34  FSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSA---SGRYLFVIGRDGKVNMIDL 90

Query: 178 ASGAIS-----QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQ 231
                +     +  S  R    +       ++ +            D       ++   
Sbjct: 91  WMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQST 149

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.7 bits (106), Expect = 6e-06
 Identities = 15/92 (16%), Positives = 33/92 (35%), Gaps = 3/92 (3%)

Query: 129 KVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG 188
                     + N    G V+    SP       IA+ + D  +++ ++A+  + +T+  
Sbjct: 222 TKTGVFEDDSLKNVAHSGSVFGLTWSP---DGTKIASASADKTIKIWNVATLKVEKTIPV 278

Query: 189 HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDI 220
                        ++  LV+   +G I F + 
Sbjct: 279 GTRIEDQQLGIIWTKQALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 10/92 (10%), Positives = 21/92 (22%)

Query: 354 QTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYT 413
                + L  T     +     T+V    + S      +  H         S       +
Sbjct: 16  ARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCAS 75

Query: 414 GGNDRQILVWCPSRHISDGVDAGPMQDQDNWS 445
           G     + +W  ++         P+       
Sbjct: 76  GDVHGNVRIWDTTQTTHILKTTIPVFSGPVKD 107

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.5 bits (90), Expect = 5e-04
 Identities = 31/270 (11%), Positives = 69/270 (25%), Gaps = 19/270 (7%)

Query: 172 VRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRF-------------W 218
           V    + S   ++  + H       + S  S +   +G   G +R               
Sbjct: 40  VYTVPVGSLTDTEIYTEHSHQTTVAKTS-PSGYYCASGDVHGNVRIWDTTQTTHILKTTI 98

Query: 219 DIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQ 278
            +       +   S+S+        + +         G ++       +  ++      +
Sbjct: 99  PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSR 158

Query: 279 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDV 338
                  +  +            +     H   V  ++   DG    S G D  I L++ 
Sbjct: 159 PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNG 218

Query: 339 ESGRNTLVNFETVRL---QTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRG 394
             G  T V  +        +     L  + D   +        +K +++ + K   T   
Sbjct: 219 VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV 278

Query: 395 HYEY-VNCCCFSSQDQELYTGGNDRQILVW 423
                          Q L +   +  I   
Sbjct: 279 GTRIEDQQLGIIWTKQALVSISANGFINFV 308

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.6 bits (101), Expect = 3e-05
 Identities = 18/147 (12%), Positives = 41/147 (27%), Gaps = 5/147 (3%)

Query: 57  RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISS----AIWY 112
             L+       +   D+            A   +      +     + A           
Sbjct: 207 GRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLL 266

Query: 113 PVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQV 172
                 +   +   +V V D      +  F+M  ++    +S      +L A  T D  +
Sbjct: 267 VDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQ-DEKPLLYALSTGDKTL 325

Query: 173 RLCDIASGAISQTLSGHRDGIMTVEWS 199
            + D  SG   ++++    G   +  +
Sbjct: 326 YIHDAESGEELRSVNQLGHGPQVITTA 352

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.4 bits (90), Expect = 6e-04
 Identities = 20/174 (11%), Positives = 39/174 (22%), Gaps = 26/174 (14%)

Query: 91  VFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYR 150
             +   +  H     + +   Y    G  V  +Y   +   D +         +      
Sbjct: 181 PEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEA 240

Query: 151 TAMSPLAASHMLIAAGTED--------------------VQVRLCDIASGAISQTLSGHR 190
                         A                          V + D  +G          
Sbjct: 241 ERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH 300

Query: 191 DGIMTVEWSTSSEWIL-VTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLL 243
             I ++  S   + +L      D  +   D       R ++    QLG  P ++
Sbjct: 301 -EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN----QLGHGPQVI 349

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 43.0 bits (100), Expect = 5e-05
 Identities = 30/318 (9%), Positives = 74/318 (23%), Gaps = 26/318 (8%)

Query: 118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI 177
             VT      + + D +  ++V        V+ + MS    S   +     D ++ + D+
Sbjct: 34  FSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSA---SGRYLLVIGRDARIDMIDL 90

Query: 178 ASGAISQTL-----SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQS 232
            +   ++          R    +        + +            D       +++   
Sbjct: 91  WAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTR 150

Query: 233 QSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQ 292
              +  +    + +V+    + A           ++         +              
Sbjct: 151 GMTVDTQTYHPEPRVAA---IIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAP 207

Query: 293 RLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR 352
            L  G   S  R    Y         +  +        S +             NF    
Sbjct: 208 FLADGGWDSSHR----YFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVH-- 261

Query: 353 LQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELY 412
                P+   +      + +   T  K    ++ K     +G            +   LY
Sbjct: 262 -PKYGPVWSTSHLGDGSISL-IGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLY 319

Query: 413 -------TGGNDRQILVW 423
                       + + V+
Sbjct: 320 VDTTFNPDARISQSVAVF 337

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 11/101 (10%), Positives = 24/101 (23%), Gaps = 2/101 (1%)

Query: 118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI 177
            ++  S    + V D    +V     +        +SP      +  A      V + D 
Sbjct: 4   AYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISP--DGTKVYVANAHSNDVSIIDT 61

Query: 178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFW 218
           A+  +  T+                +  +            
Sbjct: 62  ATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVID 102

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 36.8 bits (83), Expect = 0.004
 Identities = 16/124 (12%), Positives = 35/124 (28%), Gaps = 1/124 (0%)

Query: 98  HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLA 157
           +      +       P  T ++V       + V DT    V+   K+       A++P  
Sbjct: 152 NTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEG 211

Query: 158 ASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRF 217
               +         V + D  +  I+  +    D    +  +   + + V       +  
Sbjct: 212 TKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFCNTVSV 270

Query: 218 WDIR 221
            D  
Sbjct: 271 IDTA 274

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	446
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.98
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.97
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.97
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.94
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.94
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.94
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.92
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.91
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.9
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.89
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.86
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.86
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.84
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.83
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.79
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.79
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.78
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.72
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.66
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.54
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.5
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.5
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.48
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.42
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.4
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.33
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.08
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.05
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.81
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.76
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.66
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.61
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.46
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.41
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.41
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.24
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.22
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.11
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.0
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.97
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.92
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.75
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.73
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.62
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.51
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.39
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	96.37
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.16
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	95.76
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	95.73
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	95.45
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	94.24
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	93.24
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	92.71
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	91.53
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	84.51
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	83.99
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	82.86
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	80.67
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	80.37

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-38  Score=301.10  Aligned_cols=283  Identities=18%  Similarity=0.271  Sum_probs=227.5

Q ss_pred             CCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEE
Q 013274           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV  120 (446)
Q Consensus        41 ~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~  120 (446)
                      .|...|++|+|+| ++++|+||+ ||+|+|||+++......         +.   .....+|...|.++.|+| ++++|+
T Consensus        49 ~H~~~V~~v~fs~-~g~~latg~-dg~V~iWd~~~~~~~~~---------~~---~~~~~~h~~~I~~v~~s~-dg~~l~  113 (337)
T d1gxra_          49 NHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSP---------VS---QLDCLNRDNYIRSCKLLP-DGCTLI  113 (337)
T ss_dssp             CCSSCCCEEEECS-SSSEEEEEC-BSEEEEEETTSTTCCSC---------SE---EEECSCTTSBEEEEEECT-TSSEEE
T ss_pred             CCCCcEEEEEECC-CCCEEEEEE-CCEEEEEEccCCcccce---------eE---EeeecCCCCcEEEEEEcC-CCCEEE
Confidence            7999999999997 689999997 89999999976543210         00   112347999999999987 788999


Q ss_pred             EEeCCCeEEEEECCCCee--eEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEE
Q 013274          121 TGSYDHYVKVWDTNCTRV--VMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVE  197 (446)
Q Consensus       121 s~s~D~~i~iWd~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~  197 (446)
                      +|+.|++|++||+.....  ...+.. ...+..+.+++   +..++++++.|+.|++||+.++++.....+|...|.+++
T Consensus       114 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~  190 (337)
T d1gxra_         114 VGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP---DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID  190 (337)
T ss_dssp             EEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT---TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             Eeeccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999876543  333332 33456666766   345889999999999999999999999999999999999


Q ss_pred             EecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCcee
Q 013274          198 WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVR  277 (446)
Q Consensus       198 ~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (446)
                      |++++.. +++++.|+.|++||+++++.+..+                                                
T Consensus       191 ~s~~~~~-~~~~~~d~~v~i~d~~~~~~~~~~------------------------------------------------  221 (337)
T d1gxra_         191 ISNDGTK-LWTGGLDNTVRSWDLREGRQLQQH------------------------------------------------  221 (337)
T ss_dssp             ECTTSSE-EEEEETTSEEEEEETTTTEEEEEE------------------------------------------------
T ss_pred             ccccccc-cccccccccccccccccceeeccc------------------------------------------------
Confidence            9999875 689999999999999876543221                                                


Q ss_pred             ecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCC
Q 013274          278 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK  357 (446)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~  357 (446)
                                                   .|.+.|.+++|+|++.+|++|+.|+.+++||+.++....     ...+...
T Consensus       222 -----------------------------~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-----~~~~~~~  267 (337)
T d1gxra_         222 -----------------------------DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-----LHLHESC  267 (337)
T ss_dssp             -----------------------------ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-----ECCCSSC
T ss_pred             -----------------------------ccccceEEEEEcccccccceecccccccccccccccccc-----ccccccc
Confidence                                         245679999999999999999999999999998765311     1122344


Q ss_pred             CeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCC
Q 013274          358 PIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCP  425 (446)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~  425 (446)
                      ...+++++++..+++++. ..+++||+.+++.+..+ +|.+.|++++||||+++|+|||.|++|+||++
T Consensus       268 i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         268 VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             cceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEc-cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            566888999888877654 57999999999887765 48899999999999999999999999999975

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.5e-37  Score=285.82  Aligned_cols=305  Identities=17%  Similarity=0.276  Sum_probs=230.7

Q ss_pred             eEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC
Q 013274           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (446)
Q Consensus        37 ~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~  116 (446)
                      ..++||++.|++|+|+| ++++|||||.||+|+|||++++...                 ....+|...|.++.+++ ++
T Consensus        11 ~~L~GH~~~I~~l~~sp-~~~~l~s~s~Dg~i~iWd~~~~~~~-----------------~~~~~h~~~V~~~~~~~-~~   71 (317)
T d1vyhc1          11 YALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFE-----------------RTLKGHTDSVQDISFDH-SG   71 (317)
T ss_dssp             CEEECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTCCCC-----------------EEECCCSSCEEEEEECT-TS
T ss_pred             EEEcCCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCEE-----------------EEEeCCCCcEEEEeeec-cc
Confidence            45789999999999997 5789999999999999999876431                 12357999999999887 78


Q ss_pred             cEEEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEE
Q 013274          117 GLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMT  195 (446)
Q Consensus       117 ~~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~s  195 (446)
                      .++++++.++++.+|+.........+. ....+....+.+.   ...+++++.|+.+++||++++.....+.+|...+.+
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (317)
T d1vyhc1          72 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN---GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRM  148 (317)
T ss_dssp             SEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSS---SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred             ccccccccccccccccccccccccccccccccceeeeccCC---CceEEeeccCcceeEeecccceeeeEEccCCCccee
Confidence            899999999999999988776655443 2344556666653   457899999999999999999999999999999999


Q ss_pred             EEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCc
Q 013274          196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNG  275 (446)
Q Consensus       196 v~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (446)
                      +.|+|+++. |++++.|+.|++|++++......+......+..                                     
T Consensus       149 ~~~~~~~~~-l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~-------------------------------------  190 (317)
T d1vyhc1         149 VRPNQDGTL-IASCSNDQTVRVWVVATKECKAELREHRHVVEC-------------------------------------  190 (317)
T ss_dssp             EEECTTSSE-EEEEETTSCEEEEETTTCCEEEEECCCSSCEEE-------------------------------------
T ss_pred             eecccCCCE-EEEEeCCCeEEEEeeccceeeEEEecCCCCceE-------------------------------------
Confidence            999999874 789999999999999987766555322211000                                     


Q ss_pred             eeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeec
Q 013274          276 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT  355 (446)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~  355 (446)
                      +...+....                   .............+...+.++++|+.|+.|++||+.+++..    ..+..+.
T Consensus       191 ~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~----~~~~~~~  247 (317)
T d1vyhc1         191 ISWAPESSY-------------------SSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL----MTLVGHD  247 (317)
T ss_dssp             EEECCSCGG-------------------GGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE----EEEECCS
T ss_pred             EEEeecccc-------------------ceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEE----EEEeCCC
Confidence            000000000                   00000111222334567889999999999999999987532    1222234


Q ss_pred             CCCeEEEEcCCCcEEEEeC-CCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeC
Q 013274          356 SKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC  424 (446)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~  424 (446)
                      .....+++.+++..+++++ ...+++||+.+++.+.+|.+|.+.|++++|+||+++|+|||.|++|+||+
T Consensus       248 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         248 NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            4556688899988887765 46799999999999999999999999999999999999999999999996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-37  Score=298.21  Aligned_cols=310  Identities=23%  Similarity=0.345  Sum_probs=225.3

Q ss_pred             CCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCC-CccccccceEEeccccccCccccEeEEEEeecCCcEE
Q 013274           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGG-GHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF  119 (446)
Q Consensus        41 ~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l  119 (446)
                      +|++.|+||+|+| +|++||||+ |++|+|||+.++...... ..................+|...|.++.|+| ++++|
T Consensus        60 ~H~~~V~~l~fs~-dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~~~~l  136 (388)
T d1erja_          60 DHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFL  136 (388)
T ss_dssp             ECSSCCCEEEECT-TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT-TSSEE
T ss_pred             CCCCcEEEEEECC-CCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECC-CCCcc
Confidence            6999999999997 688999986 999999999876531100 0000000000011122357888999999987 78999


Q ss_pred             EEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEE
Q 013274          120 VTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEW  198 (446)
Q Consensus       120 ~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~  198 (446)
                      ++|+.|++|++||...++.+..+. +.+.+..+.+.+.   ...+++++.++.+++||+++.........+.. ..++.+
T Consensus       137 ~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~  212 (388)
T d1erja_         137 ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS---GDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG-VTTVAV  212 (388)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT---SSEEEEEETTSEEEEEETTTTEEEEEEECSSC-EEEEEE
T ss_pred             eecccccccccccccccccccccccccccccccccccc---cccccccccceeeeeeeccccccccccccccc-cccccc
Confidence            999999999999999988877665 3455777777764   34788999999999999999887777665555 455556


Q ss_pred             ecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceee
Q 013274          199 STSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQ  278 (446)
Q Consensus       199 s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (446)
                      .+....+|++++.||.|++||++++.....+....                                             
T Consensus       213 ~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~---------------------------------------------  247 (388)
T d1erja_         213 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSEN---------------------------------------------  247 (388)
T ss_dssp             CSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------------------------------------------------
T ss_pred             cCCCCCeEEEEcCCCeEEEeecccCccceeecccc---------------------------------------------
Confidence            55444468999999999999998765544331100                                             


Q ss_pred             cccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeee--------eeE
Q 013274          279 SSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVN--------FET  350 (446)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~--------~~~  350 (446)
                                              ....+|.++|.+++|+|+|.+|++|+.|+.|++||+.+.......        ...
T Consensus       248 ------------------------~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  303 (388)
T d1erja_         248 ------------------------ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT  303 (388)
T ss_dssp             ---------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEE
T ss_pred             ------------------------ccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeee
Confidence                                    012467888999999999999999999999999999875422110        011


Q ss_pred             EEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEE------EcCCCCEEEEeeCCCcEEEe
Q 013274          351 VRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCC------FSSQDQELYTGGNDRQILVW  423 (446)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~------fSpd~~~lvtgs~D~~v~vW  423 (446)
                      ...+......+++++++.++++++. +.+++||+.+++.+.+|.+|.+.|++++      |+||+++|||||.|++|+||
T Consensus       304 ~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW  383 (388)
T d1erja_         304 YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW  383 (388)
T ss_dssp             EECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEE
T ss_pred             cccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEE
Confidence            1122334566888899888887755 6799999999999999999999999997      46799999999999999999


Q ss_pred             CCC
Q 013274          424 CPS  426 (446)
Q Consensus       424 ~~~  426 (446)
                      +++
T Consensus       384 ~~~  386 (388)
T d1erja_         384 KYK  386 (388)
T ss_dssp             EEE
T ss_pred             eee
Confidence            864

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.3e-36  Score=284.79  Aligned_cols=288  Identities=15%  Similarity=0.315  Sum_probs=226.3

Q ss_pred             eeEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecC
Q 013274           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (446)
Q Consensus        36 ~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~  115 (446)
                      +++++||++.|++|+|+| ++.+|||||.||+|+|||+.++...                 ....+|...|.++.++| +
T Consensus        48 ~~tL~GH~~~I~~l~~s~-~~~~l~sgs~Dg~v~iWd~~~~~~~-----------------~~~~~~~~~v~~v~~~~-~  108 (340)
T d1tbga_          48 RRTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKV-----------------HAIPLRSSWVMTCAYAP-S  108 (340)
T ss_dssp             EEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTTEEE-----------------EEEECSCSCEEEEEECT-T
T ss_pred             eEEECCCCCCEEEEEECC-CCCEEEEEECCCceeeeecccceeE-----------------EEEecccccEEeeEeec-c
Confidence            456889999999999997 6789999999999999999865421                 12247889999999987 7


Q ss_pred             CcEEEEEeCCCeEEEEECCCCee----eEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCC
Q 013274          116 TGLFVTGSYDHYVKVWDTNCTRV----VMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD  191 (446)
Q Consensus       116 ~~~l~s~s~D~~i~iWd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~  191 (446)
                      +.++++|+.|+++++|+......    ...+.............   ....+.....+.....++............+..
T Consensus       109 ~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (340)
T d1tbga_         109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL---DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG  185 (340)
T ss_dssp             SSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEE---ETTEEEEEETTTEEEEEETTTTEEEEEEECCSS
T ss_pred             ceeeeeecccceeecccccccccccccceecccccccccccccc---cccccccccccccccccccccccccccccccce
Confidence            88999999999999999765432    22222111111111111   123566777889999999988887777888889


Q ss_pred             CeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCcccccc
Q 013274          192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSA  271 (446)
Q Consensus       192 ~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (446)
                      .+....+.+... ++++++.|+.|++||++++.+...+                                          
T Consensus       186 ~~~~~~~~~~~~-~~~~~~~d~~v~i~d~~~~~~~~~~------------------------------------------  222 (340)
T d1tbga_         186 DVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTF------------------------------------------  222 (340)
T ss_dssp             CEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEEEE------------------------------------------
T ss_pred             eEeeeccccccc-eeEEeecCceEEEEECCCCcEEEEE------------------------------------------
Confidence            999999998877 4789999999999999876543322                                          


Q ss_pred             CCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEE
Q 013274          272 NGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV  351 (446)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~  351 (446)
                                                        .+|.++|++|+|+|+|.+|++|+.|+.|++||+....... .+. .
T Consensus       223 ----------------------------------~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~-~~~-~  266 (340)
T d1tbga_         223 ----------------------------------TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM-TYS-H  266 (340)
T ss_dssp             ----------------------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-EEC-C
T ss_pred             ----------------------------------eCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccc-ccc-c
Confidence                                              2567789999999999999999999999999998764321 111 1


Q ss_pred             EeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeC
Q 013274          352 RLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC  424 (446)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~  424 (446)
                      .........+++++++.++++++. +.+++||+.+++.+.++.+|.+.|++|+|+||+++|+|||.|++|+||+
T Consensus       267 ~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            111223456788999988888754 6799999999999999999999999999999999999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.2e-35  Score=277.23  Aligned_cols=286  Identities=18%  Similarity=0.170  Sum_probs=223.0

Q ss_pred             CCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEE
Q 013274           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV  120 (446)
Q Consensus        41 ~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~  120 (446)
                      .+.+.+..|+++| +++.|+.++ ++.|.+||+++....                 +...+|+..|+++.++| ++.+||
T Consensus        15 ~~r~~~~~~a~~~-~g~~l~~~~-~~~v~i~~~~~~~~~-----------------~~~~~H~~~v~~~~~sp-~g~~la   74 (311)
T d1nr0a1          15 TARGTAVVLGNTP-AGDKIQYCN-GTSVYTVPVGSLTDT-----------------EIYTEHSHQTTVAKTSP-SGYYCA   74 (311)
T ss_dssp             CCTTCCCCCEECT-TSSEEEEEE-TTEEEEEETTCSSCC-----------------EEECCCSSCEEEEEECT-TSSEEE
T ss_pred             CCCCCeEEEEEcC-CCCEEEEEe-CCEEEEEECCCCcee-----------------EEEcCCCCCEEEEEEeC-CCCeEe
Confidence            4556677889987 567787774 667999999765421                 12358999999999987 789999


Q ss_pred             EEeCCCeEEEEECCCCeeeE--EEe-cCCceEEeeeccCCCCceEEEEeeC--CCcEEEEeCCCCceeeeeeCCCCCeEE
Q 013274          121 TGSYDHYVKVWDTNCTRVVM--NFK-MPGKVYRTAMSPLAASHMLIAAGTE--DVQVRLCDIASGAISQTLSGHRDGIMT  195 (446)
Q Consensus       121 s~s~D~~i~iWd~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~lasgs~--d~~v~vwd~~~~~~~~~l~~h~~~v~s  195 (446)
                      +|+.|++|++||+..+....  .+. +.+.+.++++++..   .++++++.  +..+++||+++++....+.+|.+.|.+
T Consensus        75 tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~---~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~  151 (311)
T d1nr0a1          75 SGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSES---KRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNS  151 (311)
T ss_dssp             EEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTS---CEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEE
T ss_pred             ccccCceEeeeeeeccccccccccccccCccccccccccc---ccccccccccccccccccccccccccccccccccccc
Confidence            99999999999998876543  233 35668888888753   46666654  566999999999999999999999999


Q ss_pred             EEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCc
Q 013274          196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNG  275 (446)
Q Consensus       196 v~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (446)
                      ++|+|+++++|++|+.|+.|++||+++.++...                                               
T Consensus       152 v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~-----------------------------------------------  184 (311)
T d1nr0a1         152 VDFKPSRPFRIISGSDDNTVAIFEGPPFKFKST-----------------------------------------------  184 (311)
T ss_dssp             EEECSSSSCEEEEEETTSCEEEEETTTBEEEEE-----------------------------------------------
T ss_pred             ccccccceeeecccccccccccccccccccccc-----------------------------------------------
Confidence            999999988789999999999999987543221                                               


Q ss_pred             eeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEE---
Q 013274          276 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVR---  352 (446)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~---  352 (446)
                                                   ..+|..+|+++.|+|++++|++++.|+.|++||+.++.... .++...   
T Consensus       185 -----------------------------~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~-~~~~~~~~~  234 (311)
T d1nr0a1         185 -----------------------------FGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTG-VFEDDSLKN  234 (311)
T ss_dssp             -----------------------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE-ECBCTTSSS
T ss_pred             -----------------------------cccccccccccccCccccccccccccccccccccccccccc-ccccccccc
Confidence                                         12466789999999999999999999999999998765321 121110   


Q ss_pred             -eecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEeccccc-ceEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274          353 -LQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYE-YVNCCCFSSQDQELYTGGNDRQILVWCPS  426 (446)
Q Consensus       353 -~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~-~v~~~~fSpd~~~lvtgs~D~~v~vW~~~  426 (446)
                       .+......++++|++..+++++. ..+++||+.++++++++..|.. ....+.+.++++.|++++.||.|++||++
T Consensus       235 ~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         235 VAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             CSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             ccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence             11223456889999998888765 5799999999999999988754 23445566667789999999999999986

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.1e-34  Score=277.21  Aligned_cols=300  Identities=16%  Similarity=0.174  Sum_probs=218.8

Q ss_pred             cceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEe
Q 013274           44 GSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGS  123 (446)
Q Consensus        44 ~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s  123 (446)
                      .+|+|++|+| ++++||+|+.|+.|+|||++++...          .     ...+.+|...|.++.|+| ++++|+|||
T Consensus         8 ~pIt~~~~s~-dg~~la~~~~~~~i~iw~~~~~~~~----------~-----~~~l~gH~~~V~~l~fsp-~~~~l~s~s   70 (371)
T d1k8kc_           8 EPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWV----------Q-----VHELKEHNGQVTGVDWAP-DSNRIVTCG   70 (371)
T ss_dssp             SCCCEEEECT-TSSEEEEECSSSEEEEEEEETTEEE----------E-----EEEEECCSSCEEEEEEET-TTTEEEEEE
T ss_pred             CCeEEEEECC-CCCEEEEEeCCCEEEEEECCCCCEE----------E-----EEEecCCCCCEEEEEECC-CCCEEEEEE
Confidence            6799999997 6889999999999999998754310          1     122358999999999987 788999999


Q ss_pred             CCCeEEEEECCCCeeeEEEec---CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCce----eeeeeCCCCCeEEE
Q 013274          124 YDHYVKVWDTNCTRVVMNFKM---PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI----SQTLSGHRDGIMTV  196 (446)
Q Consensus       124 ~D~~i~iWd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~----~~~l~~h~~~v~sv  196 (446)
                      .|++|++||+.++.....+..   ...+.++.++|.   ...|++|+.|+.|++|+++....    .....+|.+.|.++
T Consensus        71 ~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~---~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v  147 (371)
T d1k8kc_          71 TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPN---EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSL  147 (371)
T ss_dssp             TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTT---SSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEE
T ss_pred             CCCeEEEEeecccccccccccccccccccccccccc---cccceeecccCcceeeeeecccccccccccccccccccccc
Confidence            999999999988776554443   345788888875   45899999999999999877643    33456799999999


Q ss_pred             EEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCce
Q 013274          197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGV  276 (446)
Q Consensus       197 ~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (446)
                      +|+|+++. |++|+.|++|++||+..........                      ..        .  ......     
T Consensus       148 ~~~p~~~~-l~s~s~D~~v~v~~~~~~~~~~~~~----------------------~~--------~--~~~~~~-----  189 (371)
T d1k8kc_         148 DWHPNSVL-LAAGSCDFKCRIFSAYIKEVEERPA----------------------PT--------P--WGSKMP-----  189 (371)
T ss_dssp             EECTTSSE-EEEEETTSCEEEEECCCTTTSCCCC----------------------CB--------T--TBSCCC-----
T ss_pred             cccccccc-eeccccCcEEEEEeeccCccccccc----------------------cc--------c--cccccc-----
Confidence            99999885 7999999999999986532100000                      00        0  000000     


Q ss_pred             eecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecC
Q 013274          277 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTS  356 (446)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~  356 (446)
                                         .+  .......+|.+.|.+++|+|+|++|++++.|++|++||+.+++..    ..+..+..
T Consensus       190 -------------------~~--~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~----~~~~~~~~  244 (371)
T d1k8kc_         190 -------------------FG--ELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV----ATLASETL  244 (371)
T ss_dssp             -------------------TT--CEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE----EEEECSSC
T ss_pred             -------------------ce--eeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccce----eeeecccc
Confidence                               00  000112467888999999999999999999999999999887532    22233334


Q ss_pred             CCeEEEEcCCCcEEEEeCCCceEEEEeecCceEE-----------------------------------------Eeccc
Q 013274          357 KPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCL-----------------------------------------TFRGH  395 (446)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-----------------------------------------~l~gH  395 (446)
                      ....+++++++.+++++....+++|.........                                         ....|
T Consensus       245 ~v~s~~fs~d~~~la~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H  324 (371)
T d1k8kc_         245 PLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLH  324 (371)
T ss_dssp             CEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSS
T ss_pred             cceeeeecCCCCEEEEEcCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccc
Confidence            4556888999988888776666666543211000                                         01249


Q ss_pred             ccceEEEEEcCCC----CEEEEeeCCCcEEEeCCC
Q 013274          396 YEYVNCCCFSSQD----QELYTGGNDRQILVWCPS  426 (446)
Q Consensus       396 ~~~v~~~~fSpd~----~~lvtgs~D~~v~vW~~~  426 (446)
                      .+.|++++++|++    ..|+|+|.|+.|+||+++
T Consensus       325 ~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~  359 (371)
T d1k8kc_         325 KNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR  359 (371)
T ss_dssp             SSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred             cCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCC
Confidence            9999999998865    458999999999999874

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.9e-34  Score=266.68  Aligned_cols=283  Identities=20%  Similarity=0.315  Sum_probs=209.2

Q ss_pred             eeEeCCCccce-eEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeec
Q 013274           36 KEIVSPHKGSI-NSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV  114 (446)
Q Consensus        36 ~~~~~~H~~~v-~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~  114 (446)
                      +..++||...| +|++|+   +++|||||.||+|+|||+.+++..                 ....+|++.|.++.+++ 
T Consensus         5 ~~tL~GH~~~vitc~~~~---~~~l~tgs~Dg~i~vWd~~~~~~~-----------------~~l~~H~~~V~~l~~s~-   63 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQFE---DNYVITGADDKMIRVYDSINKKFL-----------------LQLSGHDGGVWALKYAH-   63 (355)
T ss_dssp             EEEEECCSSSCEEEEEEE---TTEEEEEETTTEEEEEETTTTEEE-----------------EEEECCSSCEEEEEEET-
T ss_pred             cEEECCcCCCcEEEEEEC---CCEEEEEeCCCeEEEEECCCCcEE-----------------EEEECCCCCEEEEEEcC-
Confidence            34578999876 667664   579999999999999999765421                 12358999999999875 


Q ss_pred             CCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEE---eeecc------------------------------------
Q 013274          115 DTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYR---TAMSP------------------------------------  155 (446)
Q Consensus       115 ~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~---~~~~~------------------------------------  155 (446)
                       +.+|+||+.|++|++|++.................   ....+                                    
T Consensus        64 -~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~  142 (355)
T d1nexb2          64 -GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL  142 (355)
T ss_dssp             -TTEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCE
T ss_pred             -CCEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceecc
Confidence             45899999999999999987665443322111000   00000                                    


Q ss_pred             ------------------------CCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeC
Q 013274          156 ------------------------LAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGC  211 (446)
Q Consensus       156 ------------------------~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~  211 (446)
                                              ...+..+++++..|+.|++||+++++.+..+.++...+.++.|+|+++. +++++.
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  221 (355)
T d1nexb2         143 VFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKR-CISASM  221 (355)
T ss_dssp             EESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTE-EEEEET
T ss_pred             ceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeecccccccccccccccee-eecccc
Confidence                                    0001235667777777888888777777778888889999999999885 689999


Q ss_pred             CCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccc
Q 013274          212 DGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVR  291 (446)
Q Consensus       212 Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (446)
                      |++|++||++++.++..+                                                              
T Consensus       222 d~~i~i~d~~~~~~~~~~--------------------------------------------------------------  239 (355)
T d1nexb2         222 DTTIRIWDLENGELMYTL--------------------------------------------------------------  239 (355)
T ss_dssp             TSCEEEEETTTCCEEEEE--------------------------------------------------------------
T ss_pred             cceEEeeecccccccccc--------------------------------------------------------------
Confidence            999999998875433221                                                              


Q ss_pred             cccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCC-CeEEEEcCCCcEE
Q 013274          292 QRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK-PIQLATTQDPAVV  370 (446)
Q Consensus       292 ~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  370 (446)
                                    .+|.+.|.+++|+  +++|++|+.|++|++||+.+.....      ..+... .....+.+++.++
T Consensus       240 --------------~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~------~~~~~~~~~~~~~~~~~~~l  297 (355)
T d1nexb2         240 --------------QGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF------SYHHTNLSAITTFYVSDNIL  297 (355)
T ss_dssp             --------------CCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEE------EEECTTCCCCCEEEECSSEE
T ss_pred             --------------ccccccccccccc--cceeeeeecccccccccccccceec------ccccCCceEEEEEcCCCCEE
Confidence                          3567778888886  4799999999999999998764322      112222 2234566778888


Q ss_pred             EEeCCCceEEEEeecCceEE-EecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274          371 FVPCMTAVKAFDIWSGKTCL-TFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS  426 (446)
Q Consensus       371 ~~~~~~~~~~~d~~~~~~~~-~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~  426 (446)
                      +++..+.+++||+.+++++. .+.+|.+.|++++|+|+ .+++++|.||+++||.++
T Consensus       298 ~~g~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~d  353 (355)
T d1nexb2         298 VSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEILD  353 (355)
T ss_dssp             EEEETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEEE
T ss_pred             EEEeCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEEe
Confidence            88888899999999999874 68899999999999987 578899999998888653

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.7e-33  Score=258.68  Aligned_cols=287  Identities=14%  Similarity=0.215  Sum_probs=207.6

Q ss_pred             ceeEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeec
Q 013274           35 YKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV  114 (446)
Q Consensus        35 ~~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~  114 (446)
                      ..+++.||++.|++|+|+| ++++|+|||.||+|++||++++....                ....+|...|.++.++| 
T Consensus         4 ~~~~~~GH~~~V~~l~~s~-dg~~l~s~s~Dg~v~vWd~~~~~~~~----------------~~~~~h~~~v~~v~~~~-   65 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNR----------------VFPDVHATMITGIKTTS-   65 (299)
T ss_dssp             EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEE----------------CSSCSCSSCEEEEEECT-
T ss_pred             cceEcCCCCCCcEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEE----------------EEcCCCCCcEEEEEeec-
Confidence            3567899999999999997 68899999999999999998754210                11247889999999987 


Q ss_pred             CCcEEEEEeCCCeEEEEECCCCee----eEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCC
Q 013274          115 DTGLFVTGSYDHYVKVWDTNCTRV----VMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHR  190 (446)
Q Consensus       115 ~~~~l~s~s~D~~i~iWd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~  190 (446)
                      ++ .+++++.|+++++|++.....    .........+..+++++..   .+++++ .++.+++|+...  .....  ..
T Consensus        66 ~g-~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g---~~~~~~-~~~~i~~~~~~~--~~~~~--~~  136 (299)
T d1nr0a2          66 KG-DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADG---DIAVAA-CYKHIAIYSHGK--LTEVP--IS  136 (299)
T ss_dssp             TS-CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTS---SCEEEE-ESSEEEEEETTE--EEEEE--CS
T ss_pred             cc-eeecccceeeEEEeccCCcccccccccccccccccccccccccc---cccccc-cccccccccccc--ccccc--cc
Confidence            55 466788899999999764321    1122334556677777643   344444 467899998542  22222  33


Q ss_pred             CCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccc
Q 013274          191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRS  270 (446)
Q Consensus       191 ~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (446)
                      ..+.+++|+|+++. |++|+.||.|++||++++.....                                          
T Consensus       137 ~~~~~~~~s~~~~~-l~~g~~dg~i~~~d~~~~~~~~~------------------------------------------  173 (299)
T d1nr0a2         137 YNSSCVALSNDKQF-VAVGGQDSKVHVYKLSGASVSEV------------------------------------------  173 (299)
T ss_dssp             SCEEEEEECTTSCE-EEEEETTSEEEEEEEETTEEEEE------------------------------------------
T ss_pred             cccccccccccccc-ccccccccccccccccccccccc------------------------------------------
Confidence            45788999999875 78999999999999876532111                                          


Q ss_pred             cCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeE
Q 013274          271 ANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFET  350 (446)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~  350 (446)
                                                       ....|..+|++++|+|++.+|++++.|+.|++||+.++.... ....
T Consensus       174 ---------------------------------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~-~~~~  219 (299)
T d1nr0a2         174 ---------------------------------KTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELA-HTNS  219 (299)
T ss_dssp             ---------------------------------EEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEES-CCCC
T ss_pred             ---------------------------------cccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence                                             012466789999999999999999999999999998764321 1112


Q ss_pred             EEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceE--EEecccc-cceEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274          351 VRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTC--LTFRGHY-EYVNCCCFSSQDQELYTGGNDRQILVWCPS  426 (446)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~--~~l~gH~-~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~  426 (446)
                      ...+......++++|++..+++++. ..+++||+.+++..  .....|. ..|.++. ++++++|+|||.|++|+||+++
T Consensus       220 ~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         220 WTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI-WLNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             CCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEE-EEETTEEEEEETTSCEEEEECC
T ss_pred             ccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEE-ECCCCEEEEEeCCCEEEEEecc
Confidence            2222344556788999998887654 68999999876543  3334444 4566664 5677899999999999999974

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-32  Score=253.54  Aligned_cols=287  Identities=18%  Similarity=0.316  Sum_probs=193.9

Q ss_pred             eeEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecC
Q 013274           36 KEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (446)
Q Consensus        36 ~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~  115 (446)
                      ..+++||++.|.+ ++++ +|++|||||.||+|+|||+++++..                 ....+|+..|.++.+.+  
T Consensus         9 ~~~l~GH~~~V~s-~~~~-~g~~l~sgs~Dg~i~vWd~~~~~~~-----------------~~~~~h~~~V~~v~~~~--   67 (342)
T d2ovrb2           9 PKVLKGHDDHVIT-CLQF-CGNRIVSGSDDNTLKVWSAVTGKCL-----------------RTLVGHTGGVWSSQMRD--   67 (342)
T ss_dssp             CEEEECSTTSCEE-EEEE-ETTEEEEEETTSCEEEEETTTCCEE-----------------EECCCCSSCEEEEEEET--
T ss_pred             CEEECCcCCceEE-EEEE-CCCEEEEEeCCCeEEEEECCCCCEE-----------------EEEeCCCCCEEEEEeCC--
Confidence            3568899999865 3444 3689999999999999999876421                 22358999999998864  


Q ss_pred             CcEEEEEeCCCeEEEEECCCCeeeEEEecCCc-eEEeeecc-----------------------------------CCCC
Q 013274          116 TGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK-VYRTAMSP-----------------------------------LAAS  159 (446)
Q Consensus       116 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~-----------------------------------~~~~  159 (446)
                       .+|++|+.|+++++|+............... +.......                                   ....
T Consensus        68 -~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (342)
T d2ovrb2          68 -NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD  146 (342)
T ss_dssp             -TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEEC
T ss_pred             -CccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccc
Confidence             4999999999999999876654433322111 00000000                                   0001


Q ss_pred             ceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCC
Q 013274          160 HMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRR  239 (446)
Q Consensus       160 ~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~  239 (446)
                      ...++.++.|+.|++||+..+..+..+.+|...+..+.+  ++. .+++++.||+|++||++.+.++..           
T Consensus       147 ~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~-~l~s~~~dg~i~~~d~~~~~~~~~-----------  212 (342)
T d2ovrb2         147 GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGI-HVVSGSLDTSIRVWDVETGNCIHT-----------  212 (342)
T ss_dssp             SSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSS-EEEEEETTSCEEEEETTTCCEEEE-----------
T ss_pred             cceeeeecCCCeEEEeecccceeeEEEcCcccccccccC--CCC-EEEEEeCCCeEEEeecccceeeeE-----------
Confidence            123556666777777777666666666666666655554  333 356777777777777665433221           


Q ss_pred             CcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEcc
Q 013274          240 PPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTE  319 (446)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~  319 (446)
                                                                                       ..+|...+.+++++ 
T Consensus       213 -----------------------------------------------------------------~~~~~~~v~~~~~~-  226 (342)
T d2ovrb2         213 -----------------------------------------------------------------LTGHQSLTSGMELK-  226 (342)
T ss_dssp             -----------------------------------------------------------------ECCCCSCEEEEEEE-
T ss_pred             -----------------------------------------------------------------ecccccceeEEecC-
Confidence                                                                             23456668777665 


Q ss_pred             CCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeC-CCceEEEEeecCceEEEec-----
Q 013274          320 DGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFR-----  393 (446)
Q Consensus       320 dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~l~-----  393 (446)
                       +.+|++|+.|++|++||+...+.... +...  ........++..++..+++++ +..+++||+.+++.++++.     
T Consensus       227 -~~~l~s~s~d~~i~iwd~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~  302 (342)
T d2ovrb2         227 -DNILVSGNADSTVKIWDIKTGQCLQT-LQGP--NKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESG  302 (342)
T ss_dssp             -TTEEEEEETTSCEEEEETTTCCEEEE-ECST--TSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTG
T ss_pred             -CCEEEEEcCCCEEEEEeccccccccc-cccc--ceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCC
Confidence             56999999999999999987653211 1110  011222334445666766664 4689999999999888774     


Q ss_pred             ccccceEEEEEcCCCCEEEEeeCCCc----EEEeCCCCC
Q 013274          394 GHYEYVNCCCFSSQDQELYTGGNDRQ----ILVWCPSRH  428 (446)
Q Consensus       394 gH~~~v~~~~fSpd~~~lvtgs~D~~----v~vW~~~~~  428 (446)
                      +|.+.|++++|+|++.+|++|+.||+    |++||.+..
T Consensus       303 ~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~~  341 (342)
T d2ovrb2         303 GSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD  341 (342)
T ss_dssp             GGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             CCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCCC
Confidence            78899999999999999999999997    999987653

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1e-31  Score=250.26  Aligned_cols=257  Identities=17%  Similarity=0.245  Sum_probs=196.0

Q ss_pred             cceeEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEee
Q 013274           34 NYKEIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYP  113 (446)
Q Consensus        34 ~~~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~  113 (446)
                      ....++.+|++.|++++|+| ++++||||+.||+|+|||+.+....            .   .....+|...|.++.|+|
T Consensus        49 ~~~~~~~~H~~~v~~~~~sp-~g~~latg~~dg~i~iwd~~~~~~~------------~---~~~~~~~~~~v~~v~~s~  112 (311)
T d1nr0a1          49 TDTEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTTQTTHI------------L---KTTIPVFSGPVKDISWDS  112 (311)
T ss_dssp             SCCEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEESSSTTCC------------E---EEEEECSSSCEEEEEECT
T ss_pred             ceeEEEcCCCCCEEEEEEeC-CCCeEeccccCceEeeeeeeccccc------------c---ccccccccCccccccccc
Confidence            34556789999999999997 6899999999999999999765421            0   012357889999999987


Q ss_pred             cCCcEEEEEeC--CCeEEEEECCCCeeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCC
Q 013274          114 VDTGLFVTGSY--DHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHR  190 (446)
Q Consensus       114 ~~~~~l~s~s~--D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~  190 (446)
                       ++++|++++.  |..+++|++++++....+.. .+.+.++++++..  ..++++|+.|+.|++||+++++....+.+|.
T Consensus       113 -d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~--~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~  189 (311)
T d1nr0a1         113 -ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSR--PFRIISGSDDNTVAIFEGPPFKFKSTFGEHT  189 (311)
T ss_dssp             -TSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSS--SCEEEEEETTSCEEEEETTTBEEEEEECCCS
T ss_pred             -cccccccccccccccccccccccccccccccccccccccccccccc--eeeeccccccccccccccccccccccccccc
Confidence             7888988886  46699999998887766553 4557888888753  3468999999999999999999999999999


Q ss_pred             CCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccc
Q 013274          191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRS  270 (446)
Q Consensus       191 ~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (446)
                      .+|.++.|+|++++ +++++.|+.|++||++++.....+...                                      
T Consensus       190 ~~i~~v~~~p~~~~-l~~~~~d~~v~~~d~~~~~~~~~~~~~--------------------------------------  230 (311)
T d1nr0a1         190 KFVHSVRYNPDGSL-FASTGGDGTIVLYNGVDGTKTGVFEDD--------------------------------------  230 (311)
T ss_dssp             SCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCEEEECBCT--------------------------------------
T ss_pred             ccccccccCccccc-ccccccccccccccccccccccccccc--------------------------------------
Confidence            99999999999885 789999999999999876543332100                                      


Q ss_pred             cCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeE
Q 013274          271 ANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFET  350 (446)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~  350 (446)
                                                     .....+|.+.|++|+|+|+|++|+||+.|++|+|||+.+++..    ..
T Consensus       231 -------------------------------~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~----~~  275 (311)
T d1nr0a1         231 -------------------------------SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE----KT  275 (311)
T ss_dssp             -------------------------------TSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE----EE
T ss_pred             -------------------------------ccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEE----EE
Confidence                                           0012478889999999999999999999999999999987532    12


Q ss_pred             EEeecC-CCeEEEEcCCCcEEEE-eCCCceEEEEe
Q 013274          351 VRLQTS-KPIQLATTQDPAVVFV-PCMTAVKAFDI  383 (446)
Q Consensus       351 ~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~d~  383 (446)
                      +..... ....+.+.+++..+++ +..+.+++||.
T Consensus       276 l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~  310 (311)
T d1nr0a1         276 IPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP  310 (311)
T ss_dssp             EECCSSGGGCEEEEEECSSCEEEEETTCCEEEEET
T ss_pred             EECCCCccceEEEEEecCCEEEEEECCCEEEEEeC
Confidence            221211 1222334444444544 45578899985

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-30  Score=236.45  Aligned_cols=270  Identities=22%  Similarity=0.361  Sum_probs=199.7

Q ss_pred             eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (446)
Q Consensus        39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~  118 (446)
                      +..|+..|+|++|   ++++|||||.||+|+|||+++++..                 ..+.+|+..|.++.+   ++++
T Consensus        11 ~~~~~~~V~c~~~---d~~~l~sgs~Dg~i~vWd~~~~~~~-----------------~~l~~H~~~V~~v~~---~~~~   67 (293)
T d1p22a2          11 RSETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECK-----------------RILTGHTGSVLCLQY---DERV   67 (293)
T ss_dssp             CCSSCCCEEEEEC---CSSEEEEEESSSCEEEEESSSCCEE-----------------EEECCCSSCEEEEEC---CSSE
T ss_pred             cCCCCCCEEEEEE---cCCEEEEEeCCCeEEEEECCCCcEE-----------------EEEecCCCCEeeeec---ccce
Confidence            4578899999876   3689999999999999999865421                 123589999998765   5679


Q ss_pred             EEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCce---eeeeeCCCCCeEE
Q 013274          119 FVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAI---SQTLSGHRDGIMT  195 (446)
Q Consensus       119 l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~---~~~l~~h~~~v~s  195 (446)
                      |+||+.|++|++|++..+................. .   ....++++..++.+.+||..+...   ...+..|...+..
T Consensus        68 l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  143 (293)
T d1p22a2          68 IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLR-F---NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV  143 (293)
T ss_dssp             EEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEE-C---CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEE
T ss_pred             eeccccccccccccccccccccccccccccccccc-c---cccceeecccccceeEeecccccccccccccccccccccc
Confidence            99999999999999998877665554333222222 1   123578888999999999987653   4456789999998


Q ss_pred             EEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCc
Q 013274          196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNG  275 (446)
Q Consensus       196 v~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (446)
                      +.+.+.   .+++++.|+.|++||+++++++..+.                                             
T Consensus       144 ~~~~~~---~~~~~s~d~~i~~~d~~~~~~~~~~~---------------------------------------------  175 (293)
T d1p22a2         144 VDFDDK---YIVSASGDRTIKVWNTSTCEFVRTLN---------------------------------------------  175 (293)
T ss_dssp             EEEETT---EEEEEETTSEEEEEETTTCCEEEEEE---------------------------------------------
T ss_pred             ceeccc---ccccccCCCceeeecCCCCcEEEEEc---------------------------------------------
Confidence            888654   36789999999999998765433321                                             


Q ss_pred             eeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeec
Q 013274          276 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQT  355 (446)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~  355 (446)
                                                     +|...+..+.++  +.++++++.|++|++||+.+.+....      ...
T Consensus       176 -------------------------------~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~------~~~  216 (293)
T d1p22a2         176 -------------------------------GHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRV------LEG  216 (293)
T ss_dssp             -------------------------------CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEE------ECC
T ss_pred             -------------------------------ccccccccccCC--CCeEEEecCCCEEEEEecccceeeee------ecc
Confidence                                           233346655554  67899999999999999988653211      111


Q ss_pred             CCCeEEEEcCCCcEEEEeC-CCceEEEEeec---------CceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeC
Q 013274          356 SKPIQLATTQDPAVVFVPC-MTAVKAFDIWS---------GKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC  424 (446)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~---------~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~  424 (446)
                      .........+++..+++++ ...+++||+.+         .....++.+|.+.|++|+|  |+++|+|||.|++|+|||
T Consensus       217 ~~~~v~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         217 HEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             CSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             cceeeeeccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence            1222334556666666654 46899999854         2356889999999999998  567899999999999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.3e-32  Score=260.07  Aligned_cols=276  Identities=13%  Similarity=0.154  Sum_probs=182.5

Q ss_pred             EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEE------EE
Q 013274           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSA------IW  111 (446)
Q Consensus        38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~------~~  111 (446)
                      +.++|.+.|++|+++   +++|+|||.|++|+|||..+......      ...+..     ...|+..+..+      ..
T Consensus         9 ~~~~H~~~I~~v~~~---~~~l~S~S~D~~iriWd~~~~~~~~~------~~~~~~-----~~~~~~~~~~~~~~~~~~~   74 (393)
T d1sq9a_           9 AGKAHDADIFSVSAC---NSFTVSCSGDGYLKVWDNKLLDNENP------KDKSYS-----HFVHKSGLHHVDVLQAIER   74 (393)
T ss_dssp             ESSCSSSCEEEEEEC---SSEEEEEETTSEEEEEESBCCTTCCG------GGGEEE-----EECCTTCEEEEEEEEEEET
T ss_pred             cCCcccCccEEEEEe---CCEEEEEECCCeEEEEECCCCCCCcc------cceeEe-----eeeccCCceEeeeEeeecc
Confidence            357999999999985   36899999999999999765432110      000100     01233222111      11


Q ss_pred             eecCCcEEEEEeCCCeEEEEECCCCeee---EE--Ee------cCCceEEeeeccCC--CCceEEEEeeCCCcEEEEeCC
Q 013274          112 YPVDTGLFVTGSYDHYVKVWDTNCTRVV---MN--FK------MPGKVYRTAMSPLA--ASHMLIAAGTEDVQVRLCDIA  178 (446)
Q Consensus       112 ~~~~~~~l~s~s~D~~i~iWd~~~~~~~---~~--~~------~~~~~~~~~~~~~~--~~~~~lasgs~d~~v~vwd~~  178 (446)
                      .+.+..++++++.|++|++|++......   ..  ..      .......+++.+..  ....++++++.|+.+++||+.
T Consensus        75 ~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~  154 (393)
T d1sq9a_          75 DAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFH  154 (393)
T ss_dssp             TTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEE
T ss_pred             CCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEee
Confidence            1122347889999999999997533211   11  11      11223444444332  234678899999999999985


Q ss_pred             CCc------------------eeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCC
Q 013274          179 SGA------------------ISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRP  240 (446)
Q Consensus       179 ~~~------------------~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~  240 (446)
                      ...                  .......+...+.+++|+|++  +|+||+.||+|++||+++++++..++..        
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~~~~~~~--------  224 (393)
T d1sq9a_         155 PFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQ--------  224 (393)
T ss_dssp             SSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECC--------
T ss_pred             cCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeecccccccccccc--------
Confidence            321                  011223456678999999986  5799999999999999887655443211        


Q ss_pred             cccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccC
Q 013274          241 PLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED  320 (446)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~d  320 (446)
                                                                                    ....+|..+|++|+|+||
T Consensus       225 --------------------------------------------------------------~~l~~h~~~V~~l~~spd  242 (393)
T d1sq9a_         225 --------------------------------------------------------------HSMINNSNSIRSVKFSPQ  242 (393)
T ss_dssp             --------------------------------------------------------------C---CCCCCEEEEEECSS
T ss_pred             --------------------------------------------------------------cccccccceEEEcccccc
Confidence                                                                          012468889999999999


Q ss_pred             CCEEEEeecCCc---EEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEeccccc
Q 013274          321 GMYLLSAGSDSR---IRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYE  397 (446)
Q Consensus       321 g~~l~sgs~D~~---i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~  397 (446)
                      |++|++|+.|++   |++||+.+++...    .+....                            ........+.||.+
T Consensus       243 g~~l~sgs~D~t~~~i~lwd~~~g~~~~----~l~~~~----------------------------~~~~~~~~~~gH~~  290 (393)
T d1sq9a_         243 GSLLAIAHDSNSFGCITLYETEFGERIG----SLSVPT----------------------------HSSQASLGEFAHSS  290 (393)
T ss_dssp             TTEEEEEEEETTEEEEEEEETTTCCEEE----EECBC------------------------------------CCBSBSS
T ss_pred             cceeeeecCCCCcceeeecccccceeee----eecccc----------------------------ccccceeeeecccC
Confidence            999999999985   8999999875321    110000                            01123345679999


Q ss_pred             ceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCCCC
Q 013274          398 YVNCCCFSSQDQELYTGGNDRQILVWCPSRHISD  431 (446)
Q Consensus       398 ~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~~~  431 (446)
                      .|++|+||||+++|+|||.|++||||++.++...
T Consensus       291 ~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~  324 (393)
T d1sq9a_         291 WVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI  324 (393)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             ceeeeccCCCCCeeEEECCCCEEEEEECCCCCEE
Confidence            9999999999999999999999999999876433

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.3e-31  Score=240.82  Aligned_cols=268  Identities=17%  Similarity=0.175  Sum_probs=191.8

Q ss_pred             eEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC
Q 013274           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (446)
Q Consensus        37 ~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~  116 (446)
                      +++++|+++|++|+|+|     |+|||.||+|++||+.++.                      .+|...|.++.+.+  +
T Consensus         7 ~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~~----------------------~~h~~~V~~~~~~~--~   57 (287)
T d1pgua2           7 KTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMH----------------------QDHSNLIVSLDNSK--A   57 (287)
T ss_dssp             EEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEEE----------------------CCCCSCEEEEECCS--T
T ss_pred             EEECCCCCceEEEEECc-----EEEEeCCCeEEEEECCCCC----------------------CCCCCCEEEEEecC--C
Confidence            45789999999999974     8999999999999986431                      37888899887764  4


Q ss_pred             cEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEE
Q 013274          117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTV  196 (446)
Q Consensus       117 ~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv  196 (446)
                      ..+++++.|+++++|++...      .....+..+.+.+   +..++++ +.+..+.+|+..++.....+..+ ..+.  
T Consensus        58 ~~~~s~s~D~~v~~w~~~~~------~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~--  124 (287)
T d1pgua2          58 QEYSSISWDDTLKVNGITKH------EFGSQPKVASANN---DGFTAVL-TNDDDLLILQSFTGDIIKSVRLN-SPGS--  124 (287)
T ss_dssp             TCCEEEETTTEEEETTEEEE------ECSSCEEEEEECS---SSEEEEE-ETTSEEEEEETTTCCEEEEEECS-SCEE--
T ss_pred             CeEEEEeecccccccccccc------ccccceeeeeecc---CCceEEE-eecccceeeeccceeeeeecccc-ceee--
Confidence            57899999999999987432      2333344445544   2334444 45677999999999888777644 3333  


Q ss_pred             EEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCce
Q 013274          197 EWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGV  276 (446)
Q Consensus       197 ~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (446)
                      ++++++..+++++..++.|++|++........+                                               
T Consensus       125 ~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~-----------------------------------------------  157 (287)
T d1pgua2         125 AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDL-----------------------------------------------  157 (287)
T ss_dssp             EEEECSSEEEEEETTTSCEEEEETTEEEEEEEC-----------------------------------------------
T ss_pred             eeeccCcceeeeccccceeeeeeccccceeeee-----------------------------------------------
Confidence            456676665444444568999998643211000                                               


Q ss_pred             eecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecC
Q 013274          277 RQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTS  356 (446)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~  356 (446)
                                                  ...|.+++++|+|+|+|.+|++|+.|+.|++||+.++......+   ..+..
T Consensus       158 ----------------------------~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~---~~h~~  206 (287)
T d1pgua2         158 ----------------------------KTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRW---AFRTS  206 (287)
T ss_dssp             ----------------------------SSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCS---CCCSS
T ss_pred             ----------------------------eeccCCceeEEEeccCccccccccccccccceeecccccccccc---ccccc
Confidence                                        01345679999999999999999999999999998765321111   11122


Q ss_pred             CCeEEEEc----------CCCcEEEEeC-CCceEEEEeec-CceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeC
Q 013274          357 KPIQLATT----------QDPAVVFVPC-MTAVKAFDIWS-GKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWC  424 (446)
Q Consensus       357 ~~~~~~~~----------~~~~~~~~~~-~~~~~~~d~~~-~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~  424 (446)
                      ....++++          .+..++++++ +..+++|++.+ .+....+.+|.+.|++++|+|++ .|+|+|.|++|++|+
T Consensus       207 ~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~  285 (287)
T d1pgua2         207 KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWN  285 (287)
T ss_dssp             CEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEE
T ss_pred             ccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEE
Confidence            22333443          4455666654 46899999976 56778889999999999999986 588999999999997


Q ss_pred             C
Q 013274          425 P  425 (446)
Q Consensus       425 ~  425 (446)
                      +
T Consensus       286 i  286 (287)
T d1pgua2         286 V  286 (287)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=3.3e-30  Score=241.50  Aligned_cols=286  Identities=15%  Similarity=0.125  Sum_probs=201.5

Q ss_pred             cceeEEEeecCCCCEEEEeeCCC-cEEEEEcccCcCCCCCCccccccceEEeccccccCc-cccEeEEEEee-cCCcEEE
Q 013274           44 GSINSLQVDLTEERYLLSGASDS-SVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGH-KYAISSAIWYP-VDTGLFV  120 (446)
Q Consensus        44 ~~v~~l~~s~~~~~~l~s~s~Dg-~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh-~~~V~~~~~~~-~~~~~l~  120 (446)
                      +.+.+|+|+|. ++.|+.++.+. .|+.||.......          .+     ....+| ...|+++.|+| .++.+|+
T Consensus        18 ~~~t~l~~~~~-~~~la~~~~~~~~i~~~~~~~~~~~----------~~-----~~~~gh~~~~v~~v~fsP~~~g~~la   81 (325)
T d1pgua1          18 NFTTHLSYDPT-TNAIAYPCGKSAFVRCLDDGDSKVP----------PV-----VQFTGHGSSVVTTVKFSPIKGSQYLC   81 (325)
T ss_dssp             TCCCCCEEETT-TTEEEEEETTEEEEEECCSSCCSSC----------SE-----EEECTTTTSCEEEEEECSSTTCCEEE
T ss_pred             CCeEEEEECCC-CCEEEEEeCCCEEEEEEeCCCCCcc----------ce-----EEEeCCCCCCEEEEEEeeCCCCCEEE
Confidence            45688999974 67788776554 3566664332210          11     112466 46799999987 3678999


Q ss_pred             EEeCCCeEEEEECCCCeeeEEE---------ecCCceEEeeeccCCCCceEEEEe--eCCCcEEEEeCCCCceeeeeeCC
Q 013274          121 TGSYDHYVKVWDTNCTRVVMNF---------KMPGKVYRTAMSPLAASHMLIAAG--TEDVQVRLCDIASGAISQTLSGH  189 (446)
Q Consensus       121 s~s~D~~i~iWd~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~lasg--s~d~~v~vwd~~~~~~~~~l~~h  189 (446)
                      ||+.|++|+|||+..+......         .+.+.+..+++++..   ..++++  +.+..+++|+.++++.+..+.+|
T Consensus        82 sgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h  158 (325)
T d1pgua1          82 SGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG---RRLCVVGEGRDNFGVFISWDSGNSLGEVSGH  158 (325)
T ss_dssp             EEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTS---SEEEEEECCSSCSEEEEETTTCCEEEECCSC
T ss_pred             EEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCC---CccceeeccccceEEEEeecccccceeeeec
Confidence            9999999999998654332211         134567788887753   344443  35778999999999999999999


Q ss_pred             CCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCcccc
Q 013274          190 RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKR  269 (446)
Q Consensus       190 ~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (446)
                      ...|.+++|+|+++.++++++.|+.|++||++..+....+.                                       
T Consensus       159 ~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~---------------------------------------  199 (325)
T d1pgua1         159 SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR---------------------------------------  199 (325)
T ss_dssp             SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC---------------------------------------
T ss_pred             ccccccccccccccceEEEeecccccccccccccccceecc---------------------------------------
Confidence            99999999999988778899999999999987543221110                                       


Q ss_pred             ccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccC-CCEEEEeecCCcEEEEecCcCceeeeee
Q 013274          270 SANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED-GMYLLSAGSDSRIRLWDVESGRNTLVNF  348 (446)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~d-g~~l~sgs~D~~i~lWd~~~~~~~~~~~  348 (446)
                                                        ...+|...|.+++|+|+ +.+|++++.|+.|++||+++++...   
T Consensus       200 ----------------------------------~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~---  242 (325)
T d1pgua1         200 ----------------------------------THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK---  242 (325)
T ss_dssp             ----------------------------------SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEE---
T ss_pred             ----------------------------------cccCCCCccEEeeeccccceeccccccccceeeeeeccccccc---
Confidence                                              01256678999999997 6899999999999999998875321   


Q ss_pred             eEEEeecCCCe--EE-EEcCCCcEEEEeC-CCceEEEEeecCceEEEecccccc--eEEEEEcCC-CCEEEEeeCCCcEE
Q 013274          349 ETVRLQTSKPI--QL-ATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEY--VNCCCFSSQ-DQELYTGGNDRQIL  421 (446)
Q Consensus       349 ~~~~~~~~~~~--~~-~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~l~gH~~~--v~~~~fSpd-~~~lvtgs~D~~v~  421 (446)
                       .+..+.....  .. ...+++.++++++ +..+++||+.+++.+..+..|...  +..++|.+. +.+|+|||.|++|+
T Consensus       243 -~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~  321 (325)
T d1pgua1         243 -YIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLN  321 (325)
T ss_dssp             -ECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEE
T ss_pred             -cccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEE
Confidence             1111111111  12 2225666666654 568999999999999888776654  334444433 35789999999999


Q ss_pred             EeCC
Q 013274          422 VWCP  425 (446)
Q Consensus       422 vW~~  425 (446)
                      ||++
T Consensus       322 vwdl  325 (325)
T d1pgua1         322 FYEL  325 (325)
T ss_dssp             EEET
T ss_pred             EEEC
Confidence            9985

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.4e-29  Score=233.29  Aligned_cols=252  Identities=19%  Similarity=0.337  Sum_probs=201.7

Q ss_pred             cccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEe
Q 013274           98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCD  176 (446)
Q Consensus        98 ~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd  176 (446)
                      .+.||++.|+++.|+| ++.+|+|||.|++|+|||+.+++++..+.. .+.+..+.+++.   ..+++++..++.+.+|+
T Consensus        12 ~L~GH~~~I~~l~~sp-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~---~~~~~~~~~~~~~~~~~   87 (317)
T d1vyhc1          12 ALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS---GKLLASCSADMTIKLWD   87 (317)
T ss_dssp             EEECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTT---SSEEEEEETTSCCCEEE
T ss_pred             EEcCCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecc---ccccccccccccccccc
Confidence            3469999999999987 788999999999999999999998888763 456788888764   45889999999999999


Q ss_pred             CCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccC
Q 013274          177 IASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAG  256 (446)
Q Consensus       177 ~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (446)
                      .........+.+|...+.++.|+|+++. +++++.|+.+++||++++.....+                           
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~---------------------------  139 (317)
T d1vyhc1          88 FQGFECIRTMHGHDHNVSSVSIMPNGDH-IVSASRDKTIKMWEVQTGYCVKTF---------------------------  139 (317)
T ss_dssp             TTSSCEEECCCCCSSCEEEEEECSSSSE-EEEEETTSEEEEEETTTCCEEEEE---------------------------
T ss_pred             ccccccccccccccccceeeeccCCCce-EEeeccCcceeEeecccceeeeEE---------------------------
Confidence            9999888889999999999999999885 789999999999999876543322                           


Q ss_pred             CCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEE
Q 013274          257 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW  336 (446)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lW  336 (446)
                                                                       .+|...+.+++|+|++.+|++++.|+.|++|
T Consensus       140 -------------------------------------------------~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~  170 (317)
T d1vyhc1         140 -------------------------------------------------TGHREWVRMVRPNQDGTLIASCSNDQTVRVW  170 (317)
T ss_dssp             -------------------------------------------------ECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             -------------------------------------------------ccCCCcceeeecccCCCEEEEEeCCCeEEEE
Confidence                                                             2455668999999999999999999999999


Q ss_pred             ecCcCceeeeeeeEEEeecCCCeEEEE--------------------cCCCcEEEEe-CCCceEEEEeecCceEEEeccc
Q 013274          337 DVESGRNTLVNFETVRLQTSKPIQLAT--------------------TQDPAVVFVP-CMTAVKAFDIWSGKTCLTFRGH  395 (446)
Q Consensus       337 d~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~-~~~~~~~~d~~~~~~~~~l~gH  395 (446)
                      ++.+++.... +.   ........+.+                    ...+..++++ ....+++|++.+++.+.++.+|
T Consensus       171 ~~~~~~~~~~-~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~  246 (317)
T d1vyhc1         171 VVATKECKAE-LR---EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH  246 (317)
T ss_dssp             ETTTCCEEEE-EC---CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             eeccceeeEE-Ee---cCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCC
Confidence            9987653211 11   01111111122                    2223344444 3467899999999999999999


Q ss_pred             ccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCCCCCcC
Q 013274          396 YEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDGVD  434 (446)
Q Consensus       396 ~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~~~~~~  434 (446)
                      ...|.+++|+|++++|++|+.|++|+||++.........
T Consensus       247 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  285 (317)
T d1vyhc1         247 DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL  285 (317)
T ss_dssp             SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE
T ss_pred             CCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEE
Confidence            999999999999999999999999999999876544333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.1e-29  Score=235.83  Aligned_cols=241  Identities=20%  Similarity=0.282  Sum_probs=194.7

Q ss_pred             CccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCee---eEEEe---cCCceEEeeeccCCCCceEEEEeeCCCcEEE
Q 013274          101 GHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRV---VMNFK---MPGKVYRTAMSPLAASHMLIAAGTEDVQVRL  174 (446)
Q Consensus       101 gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~lasgs~d~~v~v  174 (446)
                      +|...|.++.++| ++++|+||+ |++|+|||+.++..   +....   +.+.+.+++++++.   .+|++|+.|+.|++
T Consensus        49 ~H~~~V~~v~fs~-~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg---~~l~s~~~dg~i~i  123 (337)
T d1gxra_          49 NHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG---CTLIVGGEASTLSI  123 (337)
T ss_dssp             CCSSCCCEEEECS-SSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS---SEEEEEESSSEEEE
T ss_pred             CCCCcEEEEEECC-CCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCC---CEEEEeeccccccc
Confidence            7999999999987 889999988 89999999976532   22222   34558888998753   57899999999999


Q ss_pred             EeCCCC--ceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccc
Q 013274          175 CDIASG--AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKS  252 (446)
Q Consensus       175 wd~~~~--~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (446)
                      ||+...  .....+.+|...+..+.|+|++. ++++++.|+.|++||++++++...                        
T Consensus       124 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~~~~~~~~~~~------------------------  178 (337)
T d1gxra_         124 WDLAAPTPRIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVRQ------------------------  178 (337)
T ss_dssp             EECCCC--EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEE------------------------
T ss_pred             ccccccccccccccccccccccccccccccc-cccccccccccccccccccccccc------------------------
Confidence            999754  45677889999999999999987 478999999999999987543221                        


Q ss_pred             cccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCc
Q 013274          253 LSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSR  332 (446)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~  332 (446)
                                                                          ..+|...|.+++|++++.++++++.|+.
T Consensus       179 ----------------------------------------------------~~~~~~~v~~l~~s~~~~~~~~~~~d~~  206 (337)
T d1gxra_         179 ----------------------------------------------------FQGHTDGASCIDISNDGTKLWTGGLDNT  206 (337)
T ss_dssp             ----------------------------------------------------ECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             ----------------------------------------------------cccccccccccccccccccccccccccc
Confidence                                                                1245677999999999999999999999


Q ss_pred             EEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCCEE
Q 013274          333 IRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQEL  411 (446)
Q Consensus       333 i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~l  411 (446)
                      |++||+.+++.. .   ... .......+++.+++..+++++. ..+++||+.+++.. ....|.+.|++++|+||+++|
T Consensus       207 v~i~d~~~~~~~-~---~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l  280 (337)
T d1gxra_         207 VRSWDLREGRQL-Q---QHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWF  280 (337)
T ss_dssp             EEEEETTTTEEE-E---EEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEE
T ss_pred             ccccccccceee-c---ccc-cccceEEEEEcccccccceeccccccccccccccccc-cccccccccceEEECCCCCEE
Confidence            999999887532 1   111 2344566788898888887654 67999999877764 567899999999999999999


Q ss_pred             EEeeCCCcEEEeCCCCCC
Q 013274          412 YTGGNDRQILVWCPSRHI  429 (446)
Q Consensus       412 vtgs~D~~v~vW~~~~~~  429 (446)
                      +||+.|++|++|+.+...
T Consensus       281 ~s~s~Dg~i~iwd~~~~~  298 (337)
T d1gxra_         281 VSTGKDNLLNAWRTPYGA  298 (337)
T ss_dssp             EEEETTSEEEEEETTTCC
T ss_pred             EEEeCCCeEEEEECCCCC
Confidence            999999999999987654

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.5e-28  Score=234.78  Aligned_cols=276  Identities=22%  Similarity=0.378  Sum_probs=207.1

Q ss_pred             EEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCee
Q 013274           59 LLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRV  138 (446)
Q Consensus        59 l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~  138 (446)
                      ++.+..++...+|+......+             ........+|+..|+++.|+| ++++||||+ |++|+|||+.+++.
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~H~~~V~~l~fs~-dg~~lasg~-d~~i~iW~~~~~~~   95 (388)
T d1erja_          31 ALKKQTNDYYILYNPALPREI-------------DVELHKSLDHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSL   95 (388)
T ss_dssp             TSEEECSSCEEEECTTSCCCE-------------EEEEEEEEECSSCCCEEEECT-TSSEEEEEC-BSCEEEEETTTCCE
T ss_pred             ccccCCCCcEEEeCCCCCcce-------------eeeeEeeCCCCCcEEEEEECC-CCCEEEEEe-CCeEEEEEecccce
Confidence            457788899999997543321             111112247999999999987 889999987 89999999999887


Q ss_pred             eEEEec-------------------CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEe
Q 013274          139 VMNFKM-------------------PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWS  199 (446)
Q Consensus       139 ~~~~~~-------------------~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s  199 (446)
                      +..+..                   ...+.++++++.   ..+|++|+.|+.|++||...++....+.+|...|.++.++
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~---~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~  172 (388)
T d1erja_          96 VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD---GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF  172 (388)
T ss_dssp             EEEECC-----------------CCCCBEEEEEECTT---SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred             EeeecccccccccccccccccccCCCCCEEEEEECCC---CCcceecccccccccccccccccccccccccccccccccc
Confidence            766532                   223677788774   4589999999999999999999999999999999999999


Q ss_pred             cCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeec
Q 013274          200 TSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQS  279 (446)
Q Consensus       200 ~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (446)
                      +++.. +++++.++.|++||+++..+.....                                                 
T Consensus       173 ~~~~~-~~~~~~~~~i~~~d~~~~~~~~~~~-------------------------------------------------  202 (388)
T d1erja_         173 PSGDK-LVSGSGDRTVRIWDLRTGQCSLTLS-------------------------------------------------  202 (388)
T ss_dssp             TTSSE-EEEEETTSEEEEEETTTTEEEEEEE-------------------------------------------------
T ss_pred             ccccc-ccccccceeeeeeeccccccccccc-------------------------------------------------
Confidence            98875 6899999999999988654322110                                                 


Q ss_pred             ccceeecCCccccccCCCcccccccccccccCeEEEEE-ccCCCEEEEeecCCcEEEEecCcCceeeeeeeEE----Eee
Q 013274          280 SVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKV-TEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETV----RLQ  354 (446)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~f-s~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~----~~~  354 (446)
                                                  +.....++.+ .+++.+|++|+.|+.|++||+.++..... +...    ..+
T Consensus       203 ----------------------------~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~-~~~~~~~~~~h  253 (388)
T d1erja_         203 ----------------------------IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER-LDSENESGTGH  253 (388)
T ss_dssp             ----------------------------CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEE-EC------CCC
T ss_pred             ----------------------------cccccccccccCCCCCeEEEEcCCCeEEEeecccCcccee-eccccccccCC
Confidence                                        1112334444 45889999999999999999988653221 1111    111


Q ss_pred             cCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCc------------eEEEecccccceEEEEEcCCCCEEEEeeCCCcEE
Q 013274          355 TSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGK------------TCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQIL  421 (446)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~------------~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~  421 (446)
                      ......+.+++++..+++++. ..+++||+.++.            ....+..|...|++++|+|++++|++|+.|++|+
T Consensus       254 ~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~  333 (388)
T d1erja_         254 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL  333 (388)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEE
T ss_pred             CCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEE
Confidence            234456788999888877654 689999986543            3456778999999999999999999999999999


Q ss_pred             EeCCCCCCCC
Q 013274          422 VWCPSRHISD  431 (446)
Q Consensus       422 vW~~~~~~~~  431 (446)
                      +|++.+....
T Consensus       334 vwd~~~~~~~  343 (388)
T d1erja_         334 FWDKKSGNPL  343 (388)
T ss_dssp             EEETTTCCEE
T ss_pred             EEECCCCcEE
Confidence            9999866543

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=3.8e-29  Score=238.55  Aligned_cols=245  Identities=12%  Similarity=0.097  Sum_probs=189.5

Q ss_pred             ccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCee--eEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC
Q 013274          104 YAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRV--VMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG  180 (446)
Q Consensus       104 ~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~  180 (446)
                      .+|+|++|+| ++++||+|+.|+.|+|||+++++.  +..+. +.+.+.+++|+|.   ..+|++|+.|+.|++||++++
T Consensus         8 ~pIt~~~~s~-dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~---~~~l~s~s~D~~i~vWd~~~~   83 (371)
T d1k8kc_           8 EPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD---SNRIVTCGTDRNAYVWTLKGR   83 (371)
T ss_dssp             SCCCEEEECT-TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETT---TTEEEEEETTSCEEEEEEETT
T ss_pred             CCeEEEEECC-CCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCC---CCEEEEEECCCeEEEEeeccc
Confidence            4688998887 889999999999999999987764  34443 4567899999874   358999999999999999887


Q ss_pred             ce--eeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCC
Q 013274          181 AI--SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQN  258 (446)
Q Consensus       181 ~~--~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (446)
                      ..  ...+.+|...|.++.|+|+++. |++++.|++|++|++..........                            
T Consensus        84 ~~~~~~~~~~~~~~v~~i~~~p~~~~-l~~~s~d~~i~i~~~~~~~~~~~~~----------------------------  134 (371)
T d1k8kc_          84 TWKPTLVILRINRAARCVRWAPNEKK-FAVGSGSRVISICYFEQENDWWVCK----------------------------  134 (371)
T ss_dssp             EEEEEEECCCCSSCEEEEEECTTSSE-EEEEETTSSEEEEEEETTTTEEEEE----------------------------
T ss_pred             cccccccccccccccccccccccccc-ceeecccCcceeeeeeccccccccc----------------------------
Confidence            54  4456789999999999999885 7899999999999986532111100                            


Q ss_pred             CCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEec
Q 013274          259 SSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDV  338 (446)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~  338 (446)
                                                                  ....+|.+.|.+++|+|+|++|++|+.|++|++||+
T Consensus       135 --------------------------------------------~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~  170 (371)
T d1k8kc_         135 --------------------------------------------HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSA  170 (371)
T ss_dssp             --------------------------------------------EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred             --------------------------------------------ccccccccccccccccccccceeccccCcEEEEEee
Confidence                                                        011356678999999999999999999999999998


Q ss_pred             CcCceeee--------------eeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEE
Q 013274          339 ESGRNTLV--------------NFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCC  403 (446)
Q Consensus       339 ~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~  403 (446)
                      ........              .......+......++++|++..+++++. ..+++||+.+++.+..+.+|..+|++++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~  250 (371)
T d1k8kc_         171 YIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVT  250 (371)
T ss_dssp             CCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEE
T ss_pred             ccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeee
Confidence            75421100              00111112233456789999888877654 6799999999999999999999999999


Q ss_pred             EcCCCCEEEEeeCCCcEEEeCCC
Q 013274          404 FSSQDQELYTGGNDRQILVWCPS  426 (446)
Q Consensus       404 fSpd~~~lvtgs~D~~v~vW~~~  426 (446)
                      |+||+++|++|+ |+.+++|..+
T Consensus       251 fs~d~~~la~g~-d~~~~~~~~~  272 (371)
T d1k8kc_         251 FITESSLVAAGH-DCFPVLFTYD  272 (371)
T ss_dssp             EEETTEEEEEET-TSSCEEEEEE
T ss_pred             ecCCCCEEEEEc-CCceEEEEee
Confidence            999998888765 7777777554

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=6.8e-28  Score=222.03  Aligned_cols=242  Identities=13%  Similarity=0.201  Sum_probs=186.2

Q ss_pred             cccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEe--cCCceEEeeeccCCCCceEEEEeeCCCcEEEE
Q 013274           98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK--MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLC  175 (446)
Q Consensus        98 ~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vw  175 (446)
                      ...||...|++++++| ++++|+|||.|++|++||+++++++..+.  +.+.+.++++++..   . +++++.|+.+++|
T Consensus         7 ~~~GH~~~V~~l~~s~-dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g---~-~~~~~~d~~v~~~   81 (299)
T d1nr0a2           7 VRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG---D-LFTVSWDDHLKVV   81 (299)
T ss_dssp             EECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS---C-EEEEETTTEEEEE
T ss_pred             EcCCCCCCcEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccc---e-eecccceeeEEEe
Confidence            4579999999999987 88999999999999999999998877664  34567888888753   3 4566679999999


Q ss_pred             eCCCCce---eeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccc
Q 013274          176 DIASGAI---SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKS  252 (446)
Q Consensus       176 d~~~~~~---~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (446)
                      ++.....   ......|...+.++.|+|+++. ++ ++.++.+++|+.....  ..                        
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~-~~-~~~~~~i~~~~~~~~~--~~------------------------  133 (299)
T d1nr0a2          82 PAGGSGVDSSKAVANKLSSQPLGLAVSADGDI-AV-AACYKHIAIYSHGKLT--EV------------------------  133 (299)
T ss_dssp             CSSSSSSCTTSCCEEECSSCEEEEEECTTSSC-EE-EEESSEEEEEETTEEE--EE------------------------
T ss_pred             ccCCcccccccccccccccccccccccccccc-cc-cccccccccccccccc--cc------------------------
Confidence            9875432   2334567888999999999874 44 4456789999854210  00                        


Q ss_pred             cccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCc
Q 013274          253 LSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSR  332 (446)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~  332 (446)
                                                                            .....+.+++|+|++++|++|+.|+.
T Consensus       134 ------------------------------------------------------~~~~~~~~~~~s~~~~~l~~g~~dg~  159 (299)
T d1nr0a2         134 ------------------------------------------------------PISYNSSCVALSNDKQFVAVGGQDSK  159 (299)
T ss_dssp             ------------------------------------------------------ECSSCEEEEEECTTSCEEEEEETTSE
T ss_pred             ------------------------------------------------------cccccccccccccccccccccccccc
Confidence                                                                  01123678999999999999999999


Q ss_pred             EEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceE---EEecccccceEEEEEcCCC
Q 013274          333 IRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTC---LTFRGHYEYVNCCCFSSQD  408 (446)
Q Consensus       333 i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~---~~l~gH~~~v~~~~fSpd~  408 (446)
                      |++||+.+++....  . ...+......+++++++..+++++. ..+++||+.++...   ..+.+|...|++++|+|++
T Consensus       160 i~~~d~~~~~~~~~--~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~  236 (299)
T d1nr0a2         160 VHVYKLSGASVSEV--K-TIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDN  236 (299)
T ss_dssp             EEEEEEETTEEEEE--E-EEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTS
T ss_pred             cccccccccccccc--c-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999987643211  1 1122345567888998888777654 67999999887654   4678899999999999999


Q ss_pred             CEEEEeeCCCcEEEeCCCCCC
Q 013274          409 QELYTGGNDRQILVWCPSRHI  429 (446)
Q Consensus       409 ~~lvtgs~D~~v~vW~~~~~~  429 (446)
                      ++|++|+.|++|+||+++...
T Consensus       237 ~~l~sgs~dg~i~iwd~~~~~  257 (299)
T d1nr0a2         237 VRLATGSLDNSVIVWNMNKPS  257 (299)
T ss_dssp             SEEEEEETTSCEEEEETTCTT
T ss_pred             cceEEEcCCCEEEEEECCCCC
Confidence            999999999999999987653

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.9e-28  Score=227.90  Aligned_cols=297  Identities=10%  Similarity=0.044  Sum_probs=203.3

Q ss_pred             eEeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC
Q 013274           37 EIVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (446)
Q Consensus        37 ~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~  116 (446)
                      ++.++|+..|++|+|+| ++++|||||.||+|+|||+++....          ..+    ....+|...|.++.|++.++
T Consensus         5 ~~~~~h~d~I~~l~fsp-~~~~L~s~s~Dg~v~iwd~~~~~~~----------~~~----~~~~~h~~~V~~v~f~~~~~   69 (342)
T d1yfqa_           5 QIEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKN----------VDL----LQSLRYKHPLLCCNFIDNTD   69 (342)
T ss_dssp             ECSSCCSSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTE----------EEE----EEEEECSSCEEEEEEEESSS
T ss_pred             EcCCCCCCCEEEEEEeC-CCCEEEEEECCCeEEEEEccCCCcc----------eEE----EEecCCCCCEEEEEEeCCCC
Confidence            35689999999999997 5789999999999999999754321          000    11236999999999998777


Q ss_pred             cEEEEEeCCCeEEEEECCCCeeeEEEecCCc-e-EEeeeccCCCCceEEEEeeCCCcEEEEeCCCCcee----eeeeCC-
Q 013274          117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK-V-YRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAIS----QTLSGH-  189 (446)
Q Consensus       117 ~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~----~~l~~h-  189 (446)
                      .+|+||+.|++|++|++.............. . ......+   +...+++++.++.+++||++++...    .....+ 
T Consensus        70 ~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~  146 (342)
T d1yfqa_          70 LQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKY---GDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN  146 (342)
T ss_dssp             EEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEE---TTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS
T ss_pred             CEEEEcccccceeeeeccccccccccccccccccccccccc---ccccccccccccccceeeccccccceeeeccccccc
Confidence            8999999999999999987766554433221 1 1122222   3357889999999999999765432    222222 


Q ss_pred             -CCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccc
Q 013274          190 -RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQK  268 (446)
Q Consensus       190 -~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (446)
                       ........+.+.+. .+++++.|+.|++||++..........                                     
T Consensus       147 ~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~~~~~~-------------------------------------  188 (342)
T d1yfqa_         147 TKVKNKIFTMDTNSS-RLIVGMNNSQVQWFRLPLCEDDNGTIE-------------------------------------  188 (342)
T ss_dssp             SSSCCCEEEEEECSS-EEEEEESTTEEEEEESSCCTTCCCEEE-------------------------------------
T ss_pred             ccceeeeeeeeccCC-ceeeecCCCcEEEEecccCcccceeee-------------------------------------
Confidence             22334555666666 478999999999999875432100000                                     


Q ss_pred             cccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEE-EccCCCEEEEeecCCcEEEEecCcCceeee-
Q 013274          269 RSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLK-VTEDGMYLLSAGSDSRIRLWDVESGRNTLV-  346 (446)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~-fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~-  346 (446)
                                                          ...+...+.+.. +..++..+++++.|+.+.+|++........ 
T Consensus       189 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~  232 (342)
T d1yfqa_         189 ------------------------------------ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNS  232 (342)
T ss_dssp             ------------------------------------ECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTC
T ss_pred             ------------------------------------ecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeec
Confidence                                                001112233433 456778999999999999998865321110 


Q ss_pred             ----eeeEEE------eecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEee
Q 013274          347 ----NFETVR------LQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGG  415 (446)
Q Consensus       347 ----~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs  415 (446)
                          .+....      .+......++++|++.++++++. +.+++||+.+++.+.++..|. .+..++|+|++++|++++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~-~~~~~~~s~~~~~l~~a~  311 (342)
T d1yfqa_         233 SKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIACSDNILCLAT  311 (342)
T ss_dssp             TTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS-SSEEEEEEECSSEEEEEE
T ss_pred             cccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCC-CCEEEEEEeCCCEEEEEE
Confidence                000000      00112235789999988888765 579999999999988887543 356788999999999999


Q ss_pred             CCCcEEEeCCC
Q 013274          416 NDRQILVWCPS  426 (446)
Q Consensus       416 ~D~~v~vW~~~  426 (446)
                      .|.++++|..-
T Consensus       312 sdd~~~~~~~~  322 (342)
T d1yfqa_         312 SDDTFKTNAAI  322 (342)
T ss_dssp             ECTHHHHCSSS
T ss_pred             cCCcEEEeeee
Confidence            99999999764

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=3e-27  Score=221.10  Aligned_cols=256  Identities=16%  Similarity=0.196  Sum_probs=178.2

Q ss_pred             eCCC-ccceeEEEeecC-CCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC
Q 013274           39 VSPH-KGSINSLQVDLT-EERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (446)
Q Consensus        39 ~~~H-~~~v~~l~~s~~-~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~  116 (446)
                      +.+| ...|++++|+|. ++.+|+||+.||+|+|||+..+....         ............|.+.|.++.|++ ++
T Consensus        58 ~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~---------~~~~~~~~~~~~~~~~v~~v~~s~-~~  127 (325)
T d1pgua1          58 FTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESN---------SVEVNVKSEFQVLAGPISDISWDF-EG  127 (325)
T ss_dssp             ECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGT---------EEEEEEEEEEECCSSCEEEEEECT-TS
T ss_pred             EeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCccee---------eeecccccccccccCcEEEEEECC-CC
Confidence            4566 568999999974 56899999999999999987654311         000001112346888999999886 77


Q ss_pred             cEEEEEeC--CCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeee---eeCCC
Q 013274          117 GLFVTGSY--DHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT---LSGHR  190 (446)
Q Consensus       117 ~~l~s~s~--D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~---l~~h~  190 (446)
                      .++++++.  |+.+++|+.++++.+..+. +...+.++.+.+..  ..++++++.|+.|++||+.+.+....   +.+|.
T Consensus       128 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~  205 (325)
T d1pgua1         128 RRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSR--PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQG  205 (325)
T ss_dssp             SEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSS--SCEEEEEETTTEEEEEETTTBEEEEEECSSSCTT
T ss_pred             CccceeeccccceEEEEeecccccceeeeecccccccccccccc--cceEEEeecccccccccccccccceecccccCCC
Confidence            77776654  7889999999988887765 34567888888753  34678899999999999988765544   35678


Q ss_pred             CCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccc
Q 013274          191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRS  270 (446)
Q Consensus       191 ~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (446)
                      ..|.+++|+|++..+|++++.|+.|++||++++.+++.+..+..                                    
T Consensus       206 ~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~------------------------------------  249 (325)
T d1pgua1         206 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQE------------------------------------  249 (325)
T ss_dssp             CCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTB------------------------------------
T ss_pred             CccEEeeeccccceeccccccccceeeeeecccccccccccccc------------------------------------
Confidence            88999999998655689999999999999988765544321100                                    


Q ss_pred             cCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeE
Q 013274          271 ANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFET  350 (446)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~  350 (446)
                                                          .+.+.+.++.+ |||++|++++.|++|+|||+.+++.. .   .
T Consensus       250 ------------------------------------~v~~~~~s~~~-~dg~~l~s~s~D~~i~iwd~~~~~~~-~---~  288 (325)
T d1pgua1         250 ------------------------------------PVQGGIFALSW-LDSQKFATVGADATIRVWDVTTSKCV-Q---K  288 (325)
T ss_dssp             ------------------------------------CCCSCEEEEEE-SSSSEEEEEETTSEEEEEETTTTEEE-E---E
T ss_pred             ------------------------------------ccccceeeeec-cCCCEEEEEeCCCeEEEEECCCCCEE-E---E
Confidence                                                11222344444 68999999999999999999987532 1   1


Q ss_pred             EEeecC--CCeEEEE--cCCCcEEEEeCCCceEEEEe
Q 013274          351 VRLQTS--KPIQLAT--TQDPAVVFVPCMTAVKAFDI  383 (446)
Q Consensus       351 ~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~d~  383 (446)
                      ......  ....+++  .++..++..+.+..+++||+
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         289 WTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             EEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            111111  1223333  33343433344578999985

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=2.4e-26  Score=216.45  Aligned_cols=282  Identities=11%  Similarity=0.051  Sum_probs=200.8

Q ss_pred             eeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCC
Q 013274           46 INSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYD  125 (446)
Q Consensus        46 v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D  125 (446)
                      +++-.|||.||+++|+++ +|.|.+||++++...                   ..+|...|.++.|+| |+++|++++.|
T Consensus         5 ~~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~-------------------~~~~~~~v~~~~~sp-Dg~~l~~~~~~   63 (360)
T d1k32a3           5 KFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-------------------KVPEPLRIRYVRRGG-DTKVAFIHGTR   63 (360)
T ss_dssp             GGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-------------------ECSCCSCEEEEEECS-SSEEEEEEEET
T ss_pred             hhcccccCCCCCEEEEEE-CCeEEEEECCCCcEE-------------------EccCCCCEEEEEECC-CCCEEEEEEcC
Confidence            356779986788888876 579999998765321                   126888899999987 88888877655


Q ss_pred             C--eEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCC
Q 013274          126 H--YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSE  203 (446)
Q Consensus       126 ~--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~  203 (446)
                      .  .|++||+++++........+.+..++++|+.   .+|++++.++.+++|+++++.....+..|...+.+++|+|+++
T Consensus        64 ~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~  140 (360)
T d1k32a3          64 EGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNG---KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSR  140 (360)
T ss_dssp             TEEEEEEEETTTCCEEECCCCCCSEEEEEECTTS---SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSC
T ss_pred             CCCEEEEEECCCCcEEEeeCCCceEEeeeecccc---cccceeccccccccccccccceeeeeecccccccchhhcccee
Confidence            3  7999999998887766677778889998854   5899999999999999999999999999999999999999999


Q ss_pred             eEEEE---------eeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCC
Q 013274          204 WILVT---------GGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGN  274 (446)
Q Consensus       204 ~~l~S---------~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (446)
                      +++++         +..++.+++||+.++....                                               
T Consensus       141 ~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-----------------------------------------------  173 (360)
T d1k32a3         141 FIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA-----------------------------------------------  173 (360)
T ss_dssp             EEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-----------------------------------------------
T ss_pred             eeeeeccccccceeeccccceeeeccccCceee-----------------------------------------------
Confidence            75332         2344568888876543211                                               


Q ss_pred             ceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeee---eeeEE
Q 013274          275 GVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLV---NFETV  351 (446)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~---~~~~~  351 (446)
                                                    ...|...+..++|+|||++|++++.|+.+++||.........   .....
T Consensus       174 ------------------------------~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~  223 (360)
T d1k32a3         174 ------------------------------ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVI  223 (360)
T ss_dssp             ------------------------------CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEE
T ss_pred             ------------------------------ecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEE
Confidence                                          012334577889999999999999999999998764321100   00000


Q ss_pred             Eeec------------------------------------CCCeEEEEcCCCcEEEEeC--------------CCceEEE
Q 013274          352 RLQT------------------------------------SKPIQLATTQDPAVVFVPC--------------MTAVKAF  381 (446)
Q Consensus       352 ~~~~------------------------------------~~~~~~~~~~~~~~~~~~~--------------~~~~~~~  381 (446)
                      ....                                    .....+...++....+...              ...+++|
T Consensus       224 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  303 (360)
T d1k32a3         224 PLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKY  303 (360)
T ss_dssp             ESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEE
T ss_pred             ecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEE
Confidence            0000                                    0001122222222221111              1246888


Q ss_pred             EeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCCCCC
Q 013274          382 DIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDG  432 (446)
Q Consensus       382 d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~~~~  432 (446)
                      |+.+++.    ..|.+.|.+++|||||++|++++.|++|++|+.+.+....
T Consensus       304 d~~~~~~----~~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~  350 (360)
T d1k32a3         304 DVKTRKV----TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDER  350 (360)
T ss_dssp             ETTTCCE----EEEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCE
T ss_pred             ECCCCeE----EEecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcce
Confidence            8877654    3456679999999999999999999999999998775443

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=3.3e-26  Score=219.73  Aligned_cols=213  Identities=15%  Similarity=0.207  Sum_probs=146.4

Q ss_pred             CCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeec----CCcEEEEEeCCCeEEEE
Q 013274           56 ERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV----DTGLFVTGSYDHYVKVW  131 (446)
Q Consensus        56 ~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~----~~~~l~s~s~D~~i~iW  131 (446)
                      ..++++++.||+|++|++........   +...    .........++..+..+.+.+.    .+.++++++.|+++++|
T Consensus        79 ~~~~~s~~~dg~v~~w~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw  151 (393)
T d1sq9a_          79 LCLVATTSFSGDLLFYRITREDETKK---VIFE----KLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIW  151 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEEECTTTCC---EEEE----EECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEE
T ss_pred             CcEEEEEeCCCcEEEEEccCCCceee---eecc----ccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEE
Confidence            45788999999999999865432110   0000    0000112345556666666542    24689999999999999


Q ss_pred             ECCCCe-------------e-e-EEEe----cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceee------ee
Q 013274          132 DTNCTR-------------V-V-MNFK----MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ------TL  186 (446)
Q Consensus       132 d~~~~~-------------~-~-~~~~----~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~------~l  186 (446)
                      ++....             . + ....    ....+.+++++++.    +||+|+.|+.|++||+++++++.      .+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg----~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l  227 (393)
T d1sq9a_         152 KFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG----LIATGFNNGTVQISELSTLRPLYNFESQHSM  227 (393)
T ss_dssp             EEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS----EEEEECTTSEEEEEETTTTEEEEEEECCC--
T ss_pred             EeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC----EEEEEeCCCcEEEEeeccccccccccccccc
Confidence            974211             0 0 0111    12235567777642    78999999999999999987654      34


Q ss_pred             eCCCCCeEEEEEecCCCeEEEEeeCCCc---EEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCC
Q 013274          187 SGHRDGIMTVEWSTSSEWILVTGGCDGA---IRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKP  263 (446)
Q Consensus       187 ~~h~~~v~sv~~s~~~~~~l~S~s~Dg~---I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (446)
                      .+|..+|.+++|+|+++. |++|+.|++   |++||++++.++..+.......                           
T Consensus       228 ~~h~~~V~~l~~spdg~~-l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~---------------------------  279 (393)
T d1sq9a_         228 INNSNSIRSVKFSPQGSL-LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSS---------------------------  279 (393)
T ss_dssp             -CCCCCEEEEEECSSTTE-EEEEEEETTEEEEEEEETTTCCEEEEECBC-------------------------------
T ss_pred             ccccceEEEcccccccce-eeeecCCCCcceeeecccccceeeeeeccccccc---------------------------
Confidence            679999999999999985 789999875   9999999887766553211100                           


Q ss_pred             CCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCce
Q 013274          264 RAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRN  343 (446)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~  343 (446)
                                                          .......+|.+.|++|+|+|||++|+|||.|++|++||+++++.
T Consensus       280 ------------------------------------~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~  323 (393)
T d1sq9a_         280 ------------------------------------QASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKER  323 (393)
T ss_dssp             ----------------------------------------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE
T ss_pred             ------------------------------------cceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCE
Confidence                                                00012358999999999999999999999999999999998853

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=8.5e-26  Score=209.66  Aligned_cols=256  Identities=15%  Similarity=0.106  Sum_probs=173.6

Q ss_pred             ccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCee----eEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEE
Q 013274           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRV----VMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRL  174 (446)
Q Consensus        99 ~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~v  174 (446)
                      .++|+..|+++.|+| ++++|||||.|++|+|||+..+..    ...+.+.+.+.+++|++..  ..+|++|+.|+.|++
T Consensus         7 ~~~h~d~I~~l~fsp-~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~--~~~l~sg~~d~~v~~   83 (342)
T d1yfqa_           7 EQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT--DLQIYVGTVQGEILK   83 (342)
T ss_dssp             SSCCSSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS--SEEEEEEETTSCEEE
T ss_pred             CCCCCCCEEEEEEeC-CCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCC--CCEEEEcccccceee
Confidence            368999999999997 788999999999999999875532    3344567788999988743  468999999999999


Q ss_pred             EeCCCCceeeeeeCCCCCeE-EEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeecccc
Q 013274          175 CDIASGAISQTLSGHRDGIM-TVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSL  253 (446)
Q Consensus       175 wd~~~~~~~~~l~~h~~~v~-sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (446)
                      |++..+........+..... ...+.++.. .+++++.|+++++||++............                    
T Consensus        84 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~wd~~~~~~~~~~~~~~--------------------  142 (342)
T d1yfqa_          84 VDLIGSPSFQALTNNEANLGICRICKYGDD-KLIAASWDGLIEVIDPRNYGDGVIAVKNL--------------------  142 (342)
T ss_dssp             ECSSSSSSEEECBSCCCCSCEEEEEEETTT-EEEEEETTSEEEEECHHHHTTBCEEEEES--------------------
T ss_pred             eecccccccccccccccccccccccccccc-cccccccccccceeeccccccceeeeccc--------------------
Confidence            99998877666665555443 444454544 57899999999999987542211100000                    


Q ss_pred             ccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcE
Q 013274          254 SAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRI  333 (446)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i  333 (446)
                                                               .         ...+......+.+.+++..+++++.|+.|
T Consensus       143 -----------------------------------------~---------~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  172 (342)
T d1yfqa_         143 -----------------------------------------N---------SNNTKVKNKIFTMDTNSSRLIVGMNNSQV  172 (342)
T ss_dssp             -----------------------------------------C---------SSSSSSCCCEEEEEECSSEEEEEESTTEE
T ss_pred             -----------------------------------------c---------cccccceeeeeeeeccCCceeeecCCCcE
Confidence                                                     0         00001123445677888999999999999


Q ss_pred             EEEecCcCceeeeeeeEEEeecCCCeEEEE-cCCCcEEEEe-CCCceEEEEeecCce---------------EEEecccc
Q 013274          334 RLWDVESGRNTLVNFETVRLQTSKPIQLAT-TQDPAVVFVP-CMTAVKAFDIWSGKT---------------CLTFRGHY  396 (446)
Q Consensus       334 ~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~d~~~~~~---------------~~~l~gH~  396 (446)
                      ++||+.......... .............. ..++..++.+ ..+.+.+|+......               .....+|.
T Consensus       173 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (342)
T d1yfqa_         173 QWFRLPLCEDDNGTI-EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLA  251 (342)
T ss_dssp             EEEESSCCTTCCCEE-EECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSC
T ss_pred             EEEecccCcccceee-eecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCccc
Confidence            999998754321111 11111111122222 2334444444 445778887643221               11235678


Q ss_pred             cceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCC
Q 013274          397 EYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI  429 (446)
Q Consensus       397 ~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~  429 (446)
                      ..|++|+|||++++|+|||.|++|+|||++...
T Consensus       252 ~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~  284 (342)
T d1yfqa_         252 YPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK  284 (342)
T ss_dssp             CCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred             ccceeEEecCCccEEEEECCCCEEEEEECCCCc
Confidence            889999999999999999999999999998654

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=6.6e-24  Score=197.56  Aligned_cols=250  Identities=22%  Similarity=0.334  Sum_probs=195.2

Q ss_pred             cccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEe
Q 013274           98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCD  176 (446)
Q Consensus        98 ~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd  176 (446)
                      ++.||++.|+++.|+| ++++|||||.|++|+|||+.+++.+..+.. .+.+.++++++.   ..++++|+.|+.+++|+
T Consensus        50 tL~GH~~~I~~l~~s~-~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~---~~~l~~~~~d~~i~~~~  125 (340)
T d1tbga_          50 TLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS---GNYVACGGLDNICSIYN  125 (340)
T ss_dssp             EECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTT---SSEEEEEETTCCEEEEE
T ss_pred             EECCCCCCEEEEEECC-CCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeecc---ceeeeeecccceeeccc
Confidence            3469999999999987 888999999999999999999998888774 456888888874   45899999999999999


Q ss_pred             CCCCc----eeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccc
Q 013274          177 IASGA----ISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKS  252 (446)
Q Consensus       177 ~~~~~----~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (446)
                      .....    ....+.+|...........+.  .++....|...+.|+.........                        
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~------------------------  179 (340)
T d1tbga_         126 LKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQTTT------------------------  179 (340)
T ss_dssp             SSSSCSCCCEEEEECCCSSCEEEEEEEETT--EEEEEETTTEEEEEETTTTEEEEE------------------------
T ss_pred             ccccccccccceeccccccccccccccccc--cccccccccccccccccccccccc------------------------
Confidence            87653    455678888887777666543  357788899998888654321110                        


Q ss_pred             cccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCc
Q 013274          253 LSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSR  332 (446)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~  332 (446)
                                                                          ...+...+....+.+.+.++++|+.|+.
T Consensus       180 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~  207 (340)
T d1tbga_         180 ----------------------------------------------------FTGHTGDVMSLSLAPDTRLFVSGACDAS  207 (340)
T ss_dssp             ----------------------------------------------------EECCSSCEEEEEECTTSSEEEEEETTTE
T ss_pred             ----------------------------------------------------ccccceeEeeeccccccceeEEeecCce
Confidence                                                                0122345788889999999999999999


Q ss_pred             EEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEe--cccccceEEEEEcCCCC
Q 013274          333 IRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTF--RGHYEYVNCCCFSSQDQ  409 (446)
Q Consensus       333 i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l--~gH~~~v~~~~fSpd~~  409 (446)
                      |++||+.+++..    ..+..+......++++|++..+++++. ..+++|++...+....+  ..|...|++++|+|+++
T Consensus       208 v~i~d~~~~~~~----~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  283 (340)
T d1tbga_         208 AKLWDVREGMCR----QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR  283 (340)
T ss_dssp             EEEEETTTTEEE----EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSC
T ss_pred             EEEEECCCCcEE----EEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCC
Confidence            999999887532    122223445567888999988887654 57899999888776655  56778899999999999


Q ss_pred             EEEEeeCCCcEEEeCCCCCCCCCc
Q 013274          410 ELYTGGNDRQILVWCPSRHISDGV  433 (446)
Q Consensus       410 ~lvtgs~D~~v~vW~~~~~~~~~~  433 (446)
                      +|++|+.|++|+||++........
T Consensus       284 ~l~~g~~dg~i~iwd~~~~~~~~~  307 (340)
T d1tbga_         284 LLLAGYDDFNCNVWDALKADRAGV  307 (340)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEE
T ss_pred             EEEEEECCCEEEEEECCCCcEEEE
Confidence            999999999999999886654333

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=3e-24  Score=200.57  Aligned_cols=263  Identities=17%  Similarity=0.301  Sum_probs=182.1

Q ss_pred             cccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEe
Q 013274           98 HEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCD  176 (446)
Q Consensus        98 ~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd  176 (446)
                      ++.||...|..+.. + ++++|+||+.|++|+|||+.+++++..+. +.+.+.++++++.    .+|++|+.|+.|++|+
T Consensus         7 tL~GH~~~vitc~~-~-~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~----~~l~s~s~D~~i~iw~   80 (355)
T d1nexb2           7 TLRGHMTSVITCLQ-F-EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG----GILVSGSTDRTVRVWD   80 (355)
T ss_dssp             EEECCSSSCEEEEE-E-ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT----TEEEEEETTCCEEEEE
T ss_pred             EECCcCCCcEEEEE-E-CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC----CEEEEEeccccccccc
Confidence            34699888644322 2 56799999999999999999999998887 4567888988763    3689999999999999


Q ss_pred             CCCCceeeeeeCCC--CCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccc
Q 013274          177 IASGAISQTLSGHR--DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLS  254 (446)
Q Consensus       177 ~~~~~~~~~l~~h~--~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (446)
                      +...........+.  .......+.++++ .+++++.|+.|++||+++..............          .    .. 
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~----------~----~~-  144 (355)
T d1nexb2          81 IKKGCCTHVFEGHNSTVRCLDIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP----------L----VF-  144 (355)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEEEETTEE-EEEEEETTSEEEEEECCC-----------CCC----------E----EE-
T ss_pred             ccccccccccccccccccccccccccccc-eeeeecCCCcEEEEEccCCceeccccccceec----------c----ce-
Confidence            99987766554433  3345566777765 47899999999999998754332211000000          0    00 


Q ss_pred             cCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEE
Q 013274          255 AGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIR  334 (446)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~  334 (446)
                                    ....                        ...........|...+.  .+.+++.+++++..|+.|+
T Consensus       145 --------------~~~~------------------------~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~d~~i~  184 (355)
T d1nexb2         145 --------------HTPE------------------------ENPYFVGVLRGHMASVR--TVSGHGNIVVSGSYDNTLI  184 (355)
T ss_dssp             --------------SCTT------------------------TCTTEEEEEECCSSCEE--EEEEETTEEEEEETTSCEE
T ss_pred             --------------eccc------------------------cccceeeeeeecccccc--ccccccceeeeecccceee
Confidence                          0000                        00000000123333443  4567889999999999999


Q ss_pred             EEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeC-CCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEE
Q 013274          335 LWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYT  413 (446)
Q Consensus       335 lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvt  413 (446)
                      +||+.+++...    .............+.+++..++.++ ...+++|++.++..+..+.+|...|++++|+  +++|++
T Consensus       185 ~~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~  258 (355)
T d1nexb2         185 VWDVAQMKCLY----ILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVS  258 (355)
T ss_dssp             EEETTTTEEEE----EECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEE
T ss_pred             eeeccccccee----eeeccccccccccccccceeeecccccceEEeeeccccccccccccccccccccccc--cceeee
Confidence            99998865321    1112233445667788877777654 4679999999999999999999999999986  468999


Q ss_pred             eeCCCcEEEeCCCCC
Q 013274          414 GGNDRQILVWCPSRH  428 (446)
Q Consensus       414 gs~D~~v~vW~~~~~  428 (446)
                      |+.|++|++|+++..
T Consensus       259 ~~~dg~i~iwd~~~~  273 (355)
T d1nexb2         259 AAADGSIRGWDANDY  273 (355)
T ss_dssp             ECTTSEEEEEETTTC
T ss_pred             eeccccccccccccc
Confidence            999999999998754

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.1e-22  Score=185.70  Aligned_cols=275  Identities=23%  Similarity=0.366  Sum_probs=179.9

Q ss_pred             ccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeC
Q 013274           99 EHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDI  177 (446)
Q Consensus        99 ~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~  177 (446)
                      +.||+..|.++ +.+ ++++|||||.|++|+|||+.+++++..+. +.+.+.++.+.+     .+|++|+.|+.+++|+.
T Consensus        12 l~GH~~~V~s~-~~~-~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~-----~~l~s~s~D~~~~~~~~   84 (342)
T d2ovrb2          12 LKGHDDHVITC-LQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD-----NIIISGSTDRTLKVWNA   84 (342)
T ss_dssp             EECSTTSCEEE-EEE-ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET-----TEEEEEETTSCEEEEET
T ss_pred             ECCcCCceEEE-EEE-CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC-----Cccccceeccccccccc
Confidence            35899998653 333 67899999999999999999999888776 345677777764     37999999999999999


Q ss_pred             CCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCC
Q 013274          178 ASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQ  257 (446)
Q Consensus       178 ~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (446)
                      ...........+...+....+.+  . .++.+..|+.+.+|+.+++.....+.........        ..    ...  
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~--------~~----~~~--  147 (342)
T d2ovrb2          85 ETGECIHTLYGHTSTVRCMHLHE--K-RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC--------VQ----YDG--  147 (342)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEET--T-EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEE--------EE----ECS--
T ss_pred             ccccceecccccceeEeeeeccc--c-cccccccceeEEEeecccccceeeeeccccccee--------ec----ccc--
Confidence            98887777777777777776654  3 3578899999999999887665544321110000        00    000  


Q ss_pred             CCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEe
Q 013274          258 NSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWD  337 (446)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd  337 (446)
                                     ........      .+.+.. .............+|...+.  .+++++.+|++|+.|++|++||
T Consensus       148 ---------------~~~~~~~~------d~~i~~-~d~~~~~~~~~~~~~~~~~~--~~~~~~~~l~s~~~dg~i~~~d  203 (342)
T d2ovrb2         148 ---------------RRVVSGAY------DFMVKV-WDPETETCLHTLQGHTNRVY--SLQFDGIHVVSGSLDTSIRVWD  203 (342)
T ss_dssp             ---------------SCEEEEET------TSCEEE-EEGGGTEEEEEECCCSSCEE--EEEECSSEEEEEETTSCEEEEE
T ss_pred             ---------------ceeeeecC------CCeEEE-eecccceeeEEEcCcccccc--cccCCCCEEEEEeCCCeEEEee
Confidence                           00000000      000000 00000000112234554444  4556789999999999999999


Q ss_pred             cCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeC-CCceEEEEeecCceEEEecc---cccceEEEEEcCCCCEEEE
Q 013274          338 VESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRG---HYEYVNCCCFSSQDQELYT  413 (446)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~l~g---H~~~v~~~~fSpd~~~lvt  413 (446)
                      +..++...    ....+.  ....++.+++.++++++ ...+++||+...+....+.+   |...+.+++|  +++++++
T Consensus       204 ~~~~~~~~----~~~~~~--~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s  275 (342)
T d2ovrb2         204 VETGNCIH----TLTGHQ--SLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVIT  275 (342)
T ss_dssp             TTTCCEEE----EECCCC--SCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEE
T ss_pred             cccceeee----Eecccc--cceeEEecCCCEEEEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEE
Confidence            98865321    111112  22233444556666654 46899999998888777765   5556666666  5579999


Q ss_pred             eeCCCcEEEeCCCCCC
Q 013274          414 GGNDRQILVWCPSRHI  429 (446)
Q Consensus       414 gs~D~~v~vW~~~~~~  429 (446)
                      |+.|++|+||+++++.
T Consensus       276 ~s~Dg~i~iwd~~tg~  291 (342)
T d2ovrb2         276 SSDDGTVKLWDLKTGE  291 (342)
T ss_dssp             EETTSEEEEEETTTCC
T ss_pred             EcCCCEEEEEECCCCC
Confidence            9999999999998654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.91  E-value=2.6e-21  Score=176.96  Aligned_cols=267  Identities=14%  Similarity=0.140  Sum_probs=196.7

Q ss_pred             EEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEE-EEEeCCCeEEEEECCCCe
Q 013274           59 LLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF-VTGSYDHYVKVWDTNCTR  137 (446)
Q Consensus        59 l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l-~s~s~D~~i~iWd~~~~~  137 (446)
                      .|+++.|++|.+||+++++...            .+      .....+..+.++| ++++| ++++.+++|++||+.+++
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~------------~i------~~g~~p~~va~sp-dG~~l~v~~~~~~~i~v~d~~t~~   65 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTA------------TI------PVGSNPMGAVISP-DGTKVYVANAHSNDVSIIDTATNN   65 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEE------------EE------ECSSSEEEEEECT-TSSEEEEEEGGGTEEEEEETTTTE
T ss_pred             EEEECCCCEEEEEECCCCeEEE------------EE------ECCCCceEEEEeC-CCCEEEEEECCCCEEEEEECCCCc
Confidence            4678899999999998764210            00      1112355667776 77765 677889999999999999


Q ss_pred             eeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEE
Q 013274          138 VVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRF  217 (446)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~i  217 (446)
                      .+..+........+.+.+..  ..+++++..+..+.+||..+++....+..+ ....++.|+|+++.+++++..++.+.+
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~  142 (301)
T d1l0qa2          66 VIATVPAGSSPQGVAVSPDG--KQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSV  142 (301)
T ss_dssp             EEEEEECSSSEEEEEECTTS--SEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             eeeeeecccccccccccccc--ccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceee
Confidence            99888876667777777643  356777888899999999999888887755 456889999999987788888999999


Q ss_pred             EEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCC
Q 013274          218 WDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPG  297 (446)
Q Consensus       218 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (446)
                      |+..+......+.                                                                   
T Consensus       143 ~~~~~~~~~~~~~-------------------------------------------------------------------  155 (301)
T d1l0qa2         143 INTVTKAVINTVS-------------------------------------------------------------------  155 (301)
T ss_dssp             EETTTTEEEEEEE-------------------------------------------------------------------
T ss_pred             eeccccceeeecc-------------------------------------------------------------------
Confidence            9987765433221                                                                   


Q ss_pred             cccccccccccccCeEEEEEccCCCEEEEeecC-CcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-
Q 013274          298 MLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSD-SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-  375 (446)
Q Consensus       298 ~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D-~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  375 (446)
                                +...+..++++|++.++++++.+ +.+.+|+.......    .. ......+..+++.+++..+++.+. 
T Consensus       156 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~g~~~~v~~~~  220 (301)
T d1l0qa2         156 ----------VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI----DT-VKVEAAPSGIAVNPEGTKAYVTNVD  220 (301)
T ss_dssp             ----------CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE----EE-EECSSEEEEEEECTTSSEEEEEEEC
T ss_pred             ----------cCCCceEEEeeccccceeeecccccccccccccceeee----ec-ccccCCcceeecccccccccccccc
Confidence                      11236778899999988777666 55666666554211    11 111234456778888887766432 


Q ss_pred             ---CceEEEEeecCceEEEecccccceEEEEEcCCCCEE-EEeeCCCcEEEeCCCCCCC
Q 013274          376 ---TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQEL-YTGGNDRQILVWCPSRHIS  430 (446)
Q Consensus       376 ---~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~l-vtgs~D~~v~vW~~~~~~~  430 (446)
                         ..+.+||+.+++....+..+. .+.+++|||||++| |+++.|++|+|||+.+.++
T Consensus       221 ~~~~~v~v~D~~t~~~~~~~~~~~-~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~  278 (301)
T d1l0qa2         221 KYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTI  278 (301)
T ss_dssp             SSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             ceeeeeeeeecCCCeEEEEEcCCC-CEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Confidence               368999999999888887654 57999999999986 6889999999999987653

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.91  E-value=6.1e-23  Score=199.13  Aligned_cols=335  Identities=11%  Similarity=0.003  Sum_probs=209.2

Q ss_pred             eCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcE
Q 013274           39 VSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGL  118 (446)
Q Consensus        39 ~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~  118 (446)
                      +..| ..+..++||| ||++|++++.|++|++||+.++....            ..+.....+|.+.+.+..++| |+++
T Consensus        58 ~~~g-~~~~~v~fSp-DG~~l~~~s~dg~v~~~d~~t~~~~~------------~~~i~~~~~~~~~~~s~~~Sp-DG~~  122 (432)
T d1qksa2          58 LDTG-YAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTT------------VAEIKIGSEARSIETSKMEGW-EDKY  122 (432)
T ss_dssp             EECS-SCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCE------------EEEEECCSEEEEEEECCSTTC-TTTE
T ss_pred             EeCC-CCeeEEEECC-CCCEEEEEcCCCCEEEEEeeCCCceE------------EEEEecCCCCCCeEEecccCC-CCCE
Confidence            3444 3699999997 68999999999999999998754210            001111234555555544444 7876


Q ss_pred             E-EEEeCCCeEEEEECCCCeeeEEEecC------------CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeee
Q 013274          119 F-VTGSYDHYVKVWDTNCTRVVMNFKMP------------GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT  185 (446)
Q Consensus       119 l-~s~s~D~~i~iWd~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~  185 (446)
                      | ++++.|++|++||.++++++..+...            +....+.++++  +..++++...++.|.+||..+++....
T Consensus       123 l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d--g~~~~vs~~~~~~i~~~d~~~~~~~~~  200 (432)
T d1qksa2         123 AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHY--RPEFIVNVKETGKILLVDYTDLNNLKT  200 (432)
T ss_dssp             EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSS--SSEEEEEETTTTEEEEEETTCSSEEEE
T ss_pred             EEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCC--CCEEEEEEccCCeEEEEEccCCCcceE
Confidence            5 78899999999999999988766532            23344556654  335667778889999999988765443


Q ss_pred             ee-CCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCC
Q 013274          186 LS-GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPR  264 (446)
Q Consensus       186 l~-~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (446)
                      .. .+...+..+.|+|+++++++++..++.+.++|.++......+.........     .......              
T Consensus       201 ~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~-----~~~~~~~--------------  261 (432)
T d1qksa2         201 TEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHP-----GRGANFV--------------  261 (432)
T ss_dssp             EEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCC-----TTCEEEE--------------
T ss_pred             EEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCcccccc-----Cccccee--------------
Confidence            32 355678899999999987777777889999999988776665432211000     0000000              


Q ss_pred             CccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCcee
Q 013274          265 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNT  344 (446)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~  344 (446)
                          ....+      +.......+....... +  ........|...+....++|++..+++++.|.+.++|+..+....
T Consensus       262 ----~~~~g------~~~~~~~lg~~~v~~~-~--~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~  328 (432)
T d1qksa2         262 ----HPTFG------PVWATSHMGDDSVALI-G--TDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPE  328 (432)
T ss_dssp             ----ETTTE------EEEEEEBSSSSEEEEE-E--CCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSS
T ss_pred             ----cCCCC------ceecccccCCceEEec-c--cccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCC
Confidence                00000      0000000000000000 0  000112356667999999999999999999999999986653210


Q ss_pred             eeeeeEEEeecCCCeEEEEcCCCcEEEEeC-CCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEee-----CCC
Q 013274          345 LVNFETVRLQTSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGG-----NDR  418 (446)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs-----~D~  418 (446)
                      .          .....+++ +|+..++++. +..+++|++.++..   +..|.+.|..++|||||++|+...     .|+
T Consensus       329 ~----------~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~---l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g  394 (432)
T d1qksa2         329 A----------EISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAG---ITEGQPRVVQGEFNKDGTEVWFSVWNGKDQES  394 (432)
T ss_dssp             H----------HHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHT---CCSSCCEEEEEEECTTSSEEEEEEECCTTSCC
T ss_pred             C----------CeeeEEEE-EechhhcccccCCceEecccccccc---cCCCCCcEEEeEECCCCCEEEEEEecCCCCCC
Confidence            0          00011222 5666655554 35789999865532   346778899999999999885432     468


Q ss_pred             cEEEeCCCCCCCCCcCCC
Q 013274          419 QILVWCPSRHISDGVDAG  436 (446)
Q Consensus       419 ~v~vW~~~~~~~~~~~~~  436 (446)
                      .|+|||..+-++-.++-|
T Consensus       395 ~i~i~D~~T~k~~~~i~~  412 (432)
T d1qksa2         395 ALVVVDDKTLELKHVIKD  412 (432)
T ss_dssp             EEEEEETTTTEEEEEECC
T ss_pred             cEEEEECCCceEEeEecC
Confidence            899999887765433333

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=8.3e-21  Score=171.83  Aligned_cols=233  Identities=21%  Similarity=0.368  Sum_probs=169.3

Q ss_pred             cCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEe-cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCC
Q 013274          100 HGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFK-MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIA  178 (446)
Q Consensus       100 ~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~  178 (446)
                      .+|...|+|+.+   ++++|||||.|++|+|||+.+++++..+. +.+.+.++++.     ..+|++|+.|+.|++|++.
T Consensus        12 ~~~~~~V~c~~~---d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~-----~~~l~s~s~D~~i~~~~~~   83 (293)
T d1p22a2          12 SETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD-----ERVIITGSSDSTVRVWDVN   83 (293)
T ss_dssp             CSSCCCEEEEEC---CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECC-----SSEEEEEETTSCEEEEESS
T ss_pred             CCCCCCEEEEEE---cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecc-----cceeecccccccccccccc
Confidence            468888988643   68899999999999999999999988886 34567666552     3589999999999999999


Q ss_pred             CCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCC
Q 013274          179 SGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQN  258 (446)
Q Consensus       179 ~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (446)
                      .+........+........  +... .++++..++.+++||+..........                            
T Consensus        84 ~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------  132 (293)
T d1p22a2          84 TGEMLNTLIHHCEAVLHLR--FNNG-MMVTCSKDRSIAVWDMASPTDITLRR----------------------------  132 (293)
T ss_dssp             SCCEEEEECCCCSCEEEEE--CCTT-EEEEEETTSCEEEEECSSSSCCEEEE----------------------------
T ss_pred             ccccccccccccccccccc--cccc-ceeecccccceeEeeccccccccccc----------------------------
Confidence            9987777665555544433  3444 46899999999999987543211100                            


Q ss_pred             CCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEec
Q 013274          259 SSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDV  338 (446)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~  338 (446)
                                                                   ....|...+..+.+.  ..++++++.|+.|++||+
T Consensus       133 ---------------------------------------------~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~  165 (293)
T d1p22a2         133 ---------------------------------------------VLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNT  165 (293)
T ss_dssp             ---------------------------------------------EECCCSSCEEEEEEE--TTEEEEEETTSEEEEEET
T ss_pred             ---------------------------------------------cccccccccccceec--ccccccccCCCceeeecC
Confidence                                                         012345567666665  457888999999999999


Q ss_pred             CcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEe-CCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCC
Q 013274          339 ESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVP-CMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGND  417 (446)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D  417 (446)
                      .+++...    .+.... .. .....+++..++++ ....+++||+.+.+.+..+.+|...+.+  +++++.+|++|+.|
T Consensus       166 ~~~~~~~----~~~~~~-~~-v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~d  237 (293)
T d1p22a2         166 STCEFVR----TLNGHK-RG-IACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYD  237 (293)
T ss_dssp             TTCCEEE----EEECCS-SC-EEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETT
T ss_pred             CCCcEEE----EEcccc-cc-cccccCCCCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcCC
Confidence            8875321    111111 11 22223334455544 5578999999999999999999998875  56788999999999


Q ss_pred             CcEEEeCCC
Q 013274          418 RQILVWCPS  426 (446)
Q Consensus       418 ~~v~vW~~~  426 (446)
                      ++|+||++.
T Consensus       238 g~i~iwd~~  246 (293)
T d1p22a2         238 GKIKVWDLV  246 (293)
T ss_dssp             SCEEEEEHH
T ss_pred             CEEEEEECC
Confidence            999999864

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=3.3e-21  Score=175.64  Aligned_cols=234  Identities=13%  Similarity=0.121  Sum_probs=163.6

Q ss_pred             EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCc
Q 013274           38 IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTG  117 (446)
Q Consensus        38 ~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~  117 (446)
                      ...+|+..|.++.+++  +..++|++.|++|++|++.....                        ...+..+.+. .++.
T Consensus        41 ~~~~h~~~V~~~~~~~--~~~~~s~s~D~~v~~w~~~~~~~------------------------~~~~~~~~~~-~~~~   93 (287)
T d1pgua2          41 MHQDHSNLIVSLDNSK--AQEYSSISWDDTLKVNGITKHEF------------------------GSQPKVASAN-NDGF   93 (287)
T ss_dssp             EECCCCSCEEEEECCS--TTCCEEEETTTEEEETTEEEEEC------------------------SSCEEEEEEC-SSSE
T ss_pred             CCCCCCCCEEEEEecC--CCeEEEEeecccccccccccccc------------------------ccceeeeeec-cCCc
Confidence            3568999999999974  35689999999999999764321                        1122333443 3554


Q ss_pred             EEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCC-CcEEEEeCCCCceeeeee-CCCCCeEE
Q 013274          118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTED-VQVRLCDIASGAISQTLS-GHRDGIMT  195 (446)
Q Consensus       118 ~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d-~~v~vwd~~~~~~~~~l~-~h~~~v~s  195 (446)
                      .++ .+.++.+.+|+..++..+..+........  +.+.   ...+++++.+ +.+++|++........+. .|.+.+++
T Consensus        94 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~  167 (287)
T d1pgua2          94 TAV-LTNDDDLLILQSFTGDIIKSVRLNSPGSA--VSLS---QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSY  167 (287)
T ss_dssp             EEE-EETTSEEEEEETTTCCEEEEEECSSCEEE--EEEC---SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEE
T ss_pred             eEE-Eeecccceeeeccceeeeeeccccceeee--eecc---CcceeeeccccceeeeeeccccceeeeeeeccCCceeE
Confidence            544 45667899999999888887776555433  3332   2345555555 579999998766555544 58889999


Q ss_pred             EEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCc
Q 013274          196 VEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNG  275 (446)
Q Consensus       196 v~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (446)
                      ++|+|++++ |++|+.||.|++||+.++.....                                               
T Consensus       168 ~~~s~~~~~-l~~g~~dg~i~i~d~~~~~~~~~-----------------------------------------------  199 (287)
T d1pgua2         168 ISISPSETY-IAAGDVMGKILLYDLQSREVKTS-----------------------------------------------  199 (287)
T ss_dssp             EEECTTSSE-EEEEETTSCEEEEETTTTEEEEC-----------------------------------------------
T ss_pred             EEeccCccc-cccccccccccceeecccccccc-----------------------------------------------
Confidence            999999985 78999999999999876432100                                               


Q ss_pred             eeecccceeecCCccccccCCCcccccccccccccCeEEEEEccC----------CCEEEEeecCCcEEEEecCcCceee
Q 013274          276 VRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED----------GMYLLSAGSDSRIRLWDVESGRNTL  345 (446)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~d----------g~~l~sgs~D~~i~lWd~~~~~~~~  345 (446)
                                                  ...+|..+|.+++|+|+          +.+|+||+.|++|++||+.++....
T Consensus       200 ----------------------------~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~  251 (287)
T d1pgua2         200 ----------------------------RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKII  251 (287)
T ss_dssp             ----------------------------CSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCE
T ss_pred             ----------------------------cccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEE
Confidence                                        12356777888888764          5689999999999999998743222


Q ss_pred             eeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEe
Q 013274          346 VNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDI  383 (446)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  383 (446)
                         ..+..+......+++.++..++..+.+..+++|++
T Consensus       252 ---~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         252 ---KALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV  286 (287)
T ss_dssp             ---EETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred             ---EEeCCCCCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence               11222334556677788876665566678999986

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.89  E-value=4e-21  Score=185.93  Aligned_cols=286  Identities=9%  Similarity=0.008  Sum_probs=186.0

Q ss_pred             CEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCC
Q 013274           57 RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT  136 (446)
Q Consensus        57 ~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~  136 (446)
                      -++|+++.||+|+|||+.+++...                 ....| ..+..+.++| ||+++++++.|++|++||+.++
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~~~~~-----------------~l~~g-~~~~~vafSP-DGk~l~~~~~d~~v~vwd~~t~   93 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSKKIVK-----------------VIDTG-YAVHISRMSA-SGRYLLVIGRDARIDMIDLWAK   93 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTCSEEE-----------------EEECC-SSEEEEEECT-TSCEEEEEETTSEEEEEETTSS
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEE-----------------EEeCC-CCeeEEEECC-CCCEEEEEeCCCCEEEEEccCC
Confidence            357889999999999998765311                 11223 3477887776 9999999999999999999988


Q ss_pred             eeeEEE--ecCCce----EEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEee
Q 013274          137 RVVMNF--KMPGKV----YRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGG  210 (446)
Q Consensus       137 ~~~~~~--~~~~~~----~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s  210 (446)
                      +.....  ......    .+.+++|++  ..+++++..++.+++||.+++.+...+.+|...+..+.+.+++....+.++
T Consensus        94 ~~~~~~~i~~~~~~~~~~~s~~~spDG--~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s  171 (426)
T d1hzua2          94 EPTKVAEIKIGIEARSVESSKFKGYED--RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIAS  171 (426)
T ss_dssp             SCEEEEEEECCSEEEEEEECCSTTCTT--TEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEEC
T ss_pred             ceeEEEEEeCCCCCcceEEeeeecCCC--CEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEEC
Confidence            754433  322222    233344432  345566678999999999999999999999888888888888876667888


Q ss_pred             CCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCcc
Q 013274          211 CDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSV  290 (446)
Q Consensus       211 ~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (446)
                      .|+...+|.......+..+......                                                       
T Consensus       172 ~d~~~~~~~~~~~~~i~~~~~~~~~-------------------------------------------------------  196 (426)
T d1hzua2         172 HEHPEFIVNVKETGKVLLVNYKDID-------------------------------------------------------  196 (426)
T ss_dssp             SSSSEEEEEETTTTEEEEEECSSSS-------------------------------------------------------
T ss_pred             CCCCEEEEecCCCCeEEEEEecccc-------------------------------------------------------
Confidence            8888887776543322211100000                                                       


Q ss_pred             ccccCCCcccccccccccccCeEEEEEccCCCEEEEee-cCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEc-CCCc
Q 013274          291 RQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG-SDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATT-QDPA  368 (446)
Q Consensus       291 ~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs-~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  368 (446)
                               .......++...+..+.|+|+|++++++. .+..+.+|+..+++.... ... ...........+. +...
T Consensus       197 ---------~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~  265 (426)
T d1hzua2         197 ---------NLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSAL-VDV-GKTPHPGRGANFVHPKYG  265 (426)
T ss_dssp             ---------SCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEE-EEC-SSCCCCSCCEEEEETTTE
T ss_pred             ---------ceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEE-ecc-CCcccccceeeeecCCCC
Confidence                     00000123445588899999999876664 566688999888653211 111 0001111111111 1111


Q ss_pred             EE-EEeC--CCceEEEEe-------ecCceEEEecccccceEEEEEcCCCCEEE-------EeeCCCcEEEeCCCCCC
Q 013274          369 VV-FVPC--MTAVKAFDI-------WSGKTCLTFRGHYEYVNCCCFSSQDQELY-------TGGNDRQILVWCPSRHI  429 (446)
Q Consensus       369 ~~-~~~~--~~~~~~~d~-------~~~~~~~~l~gH~~~v~~~~fSpd~~~lv-------tgs~D~~v~vW~~~~~~  429 (446)
                      .+ ....  ...+.+|+.       ++++...++.+|...+..++||||+++|+       +++.|++|+||++.+..
T Consensus       266 ~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~  343 (426)
T d1hzua2         266 PVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD  343 (426)
T ss_dssp             EEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred             ceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCC
Confidence            11 1111  223444443       34578889999999999999999999999       57789999999987654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.88  E-value=8.4e-21  Score=183.65  Aligned_cols=324  Identities=13%  Similarity=0.107  Sum_probs=200.2

Q ss_pred             ceecccccee--EeCCCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCcccc
Q 013274           28 STLQLSNYKE--IVSPHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYA  105 (446)
Q Consensus        28 ~~~~~~~~~~--~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~  105 (446)
                      ..+++.+++.  .+..| ..+..|+||| ||++|++++.|++|++||+++++..            .........+|...
T Consensus        45 ~vwD~~t~~~~~~l~~g-~~~~~vafSP-DGk~l~~~~~d~~v~vwd~~t~~~~------------~~~~i~~~~~~~~~  110 (426)
T d1hzua2          45 ALVDGDSKKIVKVIDTG-YAVHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPT------------KVAEIKIGIEARSV  110 (426)
T ss_dssp             EEEETTTCSEEEEEECC-SSEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCE------------EEEEEECCSEEEEE
T ss_pred             EEEECCCCcEEEEEeCC-CCeeEEEECC-CCCEEEEEeCCCCEEEEEccCCcee------------EEEEEeCCCCCcce
Confidence            3344443333  24445 4589999997 6899999999999999999876521            01111222456666


Q ss_pred             EeEEEEeecCCcEE-EEEeCCCeEEEEECCCCeeeEEEecCC------------ceEEeeeccCCCCceEEEEeeCCCcE
Q 013274          106 ISSAIWYPVDTGLF-VTGSYDHYVKVWDTNCTRVVMNFKMPG------------KVYRTAMSPLAASHMLIAAGTEDVQV  172 (446)
Q Consensus       106 V~~~~~~~~~~~~l-~s~s~D~~i~iWd~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~lasgs~d~~v  172 (446)
                      +.++.++| |++++ +++..|+++++||..++.++......+            ....+..+++.  ..++.+....+.+
T Consensus       111 ~~s~~~sp-DG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~--~~~~~~~~~~~~i  187 (426)
T d1hzua2         111 ESSKFKGY-EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEH--PEFIVNVKETGKV  187 (426)
T ss_dssp             EECCSTTC-TTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSS--SEEEEEETTTTEE
T ss_pred             EEeeeecC-CCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCC--CEEEEecCCCCeE
Confidence            66666665 77765 566689999999999988776654322            12222222221  1222333334455


Q ss_pred             EEEeCCCCce-eeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeecc
Q 013274          173 RLCDIASGAI-SQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISK  251 (446)
Q Consensus       173 ~vwd~~~~~~-~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (446)
                      .+++..++.. .....++...+..+.|+|++++++++...+..+.+||..++.....+.......               
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------  252 (426)
T d1hzua2         188 LLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPH---------------  252 (426)
T ss_dssp             EEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCC---------------
T ss_pred             EEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCccc---------------
Confidence            5555554432 233446778889999999999877777788899999998877665543211100               


Q ss_pred             ccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCC
Q 013274          252 SLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDS  331 (446)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~  331 (446)
                                                                  +.  ........|.+.+....+++++...+.++.+.
T Consensus       253 --------------------------------------------~~--~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~  286 (426)
T d1hzua2         253 --------------------------------------------PG--RGANFVHPKYGPVWSTSHLGDGSISLIGTDPK  286 (426)
T ss_dssp             --------------------------------------------CS--CCEEEEETTTEEEEEEECTTTCEEEEEECCTT
T ss_pred             --------------------------------------------cc--ceeeeecCCCCceEEeccCCCceEEEeecccc
Confidence                                                        00  00000112334455555556665555555555


Q ss_pred             cEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeC--------CCceEEEEeecCceEEEe---------cc
Q 013274          332 RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC--------MTAVKAFDIWSGKTCLTF---------RG  394 (446)
Q Consensus       332 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~d~~~~~~~~~l---------~g  394 (446)
                      .+++|+.+.       ...+..+...+..++++|++..+++..        ...+++||+.+++...++         ..
T Consensus       287 ~~~~~~~~~-------~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~  359 (426)
T d1hzua2         287 NHPQYAWKK-------VAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGE  359 (426)
T ss_dssp             TCTTTBTSE-------EEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCS
T ss_pred             ccccccceE-------eEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCC
Confidence            444443221       112223344566788999999988643        236999999998766544         35


Q ss_pred             cccceEEEEEcCCCCEE-EEe----eCCCcEEEeCCCCCCCCCcCCC
Q 013274          395 HYEYVNCCCFSSQDQEL-YTG----GNDRQILVWCPSRHISDGVDAG  436 (446)
Q Consensus       395 H~~~v~~~~fSpd~~~l-vtg----s~D~~v~vW~~~~~~~~~~~~~  436 (446)
                      |...|..++|||||++| +|+    +.|+.|+|||..+-++-.++.|
T Consensus       360 ~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~  406 (426)
T d1hzua2         360 GAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKD  406 (426)
T ss_dssp             SCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECC
T ss_pred             CCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECC
Confidence            66779999999999876 453    4688999999987765444444

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=1e-19  Score=168.67  Aligned_cols=292  Identities=11%  Similarity=0.077  Sum_probs=187.6

Q ss_pred             CEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEE-EEEeCCCeEEEEECCC
Q 013274           57 RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF-VTGSYDHYVKVWDTNC  135 (446)
Q Consensus        57 ~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l-~s~s~D~~i~iWd~~~  135 (446)
                      +|+++++.|++|+|||+++.+...            .+   ....+...+.++.++| |++++ ++++.|+.|.+||+.+
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~------------~i---~~~~~~~~~~~i~~sp-Dg~~l~v~~~~~~~v~v~D~~t   65 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDK------------VI---TIADAGPTPMVPMVAP-GGRIAYATVNKSESLVKIDLVT   65 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEE------------EE---ECTTCTTCCCCEEECT-TSSEEEEEETTTTEEEEEETTT
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEE------------EE---ECCCCCCCccEEEECC-CCCEEEEEECCCCeEEEEECCC
Confidence            589999999999999998764210            01   0112333455667776 77776 5778899999999999


Q ss_pred             CeeeEEEecCCc------eEEeeeccCCCCceEEEEee------------CCCcEEEEeCCCCceeeeeeCCCCCeEEEE
Q 013274          136 TRVVMNFKMPGK------VYRTAMSPLAASHMLIAAGT------------EDVQVRLCDIASGAISQTLSGHRDGIMTVE  197 (446)
Q Consensus       136 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~lasgs------------~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~  197 (446)
                      ++.+..+.....      ...++++++.   ..++++.            .+..+.+||..++.....+..+ ..+..++
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~v~~s~dg---~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~  141 (337)
T d1pbyb_          66 GETLGRIDLSTPEERVKSLFGAALSPDG---KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-RQITMLA  141 (337)
T ss_dssp             CCEEEEEECCBTTEEEECTTCEEECTTS---SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-SSCCCEE
T ss_pred             CcEEEEEecCCCcccccceeeEEEcCCC---cEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc-CCceEEE
Confidence            999887765432      2245566543   2343332            4678999999999988888754 5578899


Q ss_pred             EecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCcee
Q 013274          198 WSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVR  277 (446)
Q Consensus       198 ~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (446)
                      |+|+++++ ++++  +.+.+||..++.....+..........                             ...++.   
T Consensus       142 ~s~dg~~l-~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~---  186 (337)
T d1pbyb_         142 WARDGSKL-YGLG--RDLHVMDPEAGTLVEDKPIQSWEAETY-----------------------------AQPDVL---  186 (337)
T ss_dssp             ECTTSSCE-EEES--SSEEEEETTTTEEEEEECSTTTTTTTB-----------------------------CCCBCC---
T ss_pred             EcCCCCEE-EEEc--CCcceeeeecCcEEEEeecCCccccce-----------------------------ecCCcc---
Confidence            99999974 5555  457889998877665543211100000                             000000   


Q ss_pred             ecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCC
Q 013274          278 QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSK  357 (446)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~  357 (446)
                            .         ....      ....+...+.......+...+..++.++.+.+||+.++......+.   .....
T Consensus       187 ------~---------~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  242 (337)
T d1pbyb_         187 ------A---------VWNQ------HESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR---IMDVF  242 (337)
T ss_dssp             ------C---------CCCC------CTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE---ECSSC
T ss_pred             ------e---------eecc------ccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEec---CCCcc
Confidence                  0         0000      0001111122223334444444566677899999988754322111   11223


Q ss_pred             CeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCC
Q 013274          358 PIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI  429 (446)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~  429 (446)
                      ...+...++...++.. ...+++||+.+++.+..+. +...+.+++|||||++|++++.|++|+|||+.+.+
T Consensus       243 ~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~  312 (337)
T d1pbyb_         243 YFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE  312 (337)
T ss_dssp             EEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred             eEEEEecccceEEEEc-cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence            4456677777776654 4689999999999887774 56678999999999999999999999999998654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.86  E-value=1.5e-20  Score=176.32  Aligned_cols=314  Identities=11%  Similarity=0.019  Sum_probs=191.6

Q ss_pred             cceeccccceeEeCCCccceeEEEeecCCCCEEEEeeCCC--cEEEEEcccCcCCCCCCccccccceEEeccccccCccc
Q 013274           27 LSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSGASDS--SVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKY  104 (446)
Q Consensus        27 l~~~~~~~~~~~~~~H~~~v~~l~~s~~~~~~l~s~s~Dg--~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~  104 (446)
                      +..+.......+..+|.+.|.+++|+| ++++|++++.|.  .|++||++++..                  ....+|..
T Consensus        26 v~v~d~~~~~~~~~~~~~~v~~~~~sp-Dg~~l~~~~~~~g~~v~v~d~~~~~~------------------~~~~~~~~   86 (360)
T d1k32a3          26 AFIQDVSGTYVLKVPEPLRIRYVRRGG-DTKVAFIHGTREGDFLGIYDYRTGKA------------------EKFEENLG   86 (360)
T ss_dssp             EEEECTTSSBEEECSCCSCEEEEEECS-SSEEEEEEEETTEEEEEEEETTTCCE------------------EECCCCCC
T ss_pred             EEEEECCCCcEEEccCCCCEEEEEECC-CCCEEEEEEcCCCCEEEEEECCCCcE------------------EEeeCCCc
Confidence            333444444445558999999999997 678888776653  799999986542                  11247888


Q ss_pred             cEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecC-CceEEeeeccCCCCceEEEEe----------eCCCcEE
Q 013274          105 AISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMP-GKVYRTAMSPLAASHMLIAAG----------TEDVQVR  173 (446)
Q Consensus       105 ~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lasg----------s~d~~v~  173 (446)
                      .|.++.|+| ++++|++++.|+.+++|++.+++....+... ..+..++++++.   .+|+.+          ..++.++
T Consensus        87 ~v~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg---~~la~~~~~~~~~~~~~~~~~~~  162 (360)
T d1k32a3          87 NVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNS---RFIAYGFPLKHGETDGYVMQAIH  162 (360)
T ss_dssp             SEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTS---CEEEEEEEECSSTTCSCCEEEEE
T ss_pred             eEEeeeecc-cccccceeccccccccccccccceeeeeecccccccchhhccce---eeeeeeccccccceeecccccee
Confidence            899999987 8999999999999999999998877666543 345667787753   355533          3455799


Q ss_pred             EEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeecccc
Q 013274          174 LCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSL  253 (446)
Q Consensus       174 vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (446)
                      +||+.+++... +..|...+..+.|+|+++. |++++.|+.+++||........  ......     .    ...    .
T Consensus       163 v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~-l~~~s~~~~~~~~d~~~~~~~~--~~~~~~-----~----~~~----~  225 (360)
T d1k32a3         163 VYDMEGRKIFA-ATTENSHDYAPAFDADSKN-LYYLSYRSLDPSPDRVVLNFSF--EVVSKP-----F----VIP----L  225 (360)
T ss_dssp             EEETTTTEEEE-CSCSSSBEEEEEECTTSCE-EEEEESCCCCCEECSSSSCEEC--CSCBEE-----E----EEE----S
T ss_pred             eeccccCceee-ecccccccccccccCCCCE-EEEEeCCCceEcccccccceee--ccccce-----E----EEe----c
Confidence            99999876544 4457778899999999986 6899999999999976543210  000000     0    000    0


Q ss_pred             ccCCCCCcCCCCccccccCCCcee---ecccceeecCCccccccCCCcccccccccccccCeEEEEEccC---CCEEEEe
Q 013274          254 SAGQNSSVKPRAPQKRSANGNGVR---QSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED---GMYLLSA  327 (446)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~d---g~~l~sg  327 (446)
                      ........................   ......+..        ..+.   ......+.+.+..+.+.+.   +.+++++
T Consensus       226 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (360)
T d1k32a3         226 IPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINV--------DPGD---YRMIIPLESSILIYSVPVHGEFAAYYQGA  294 (360)
T ss_dssp             STTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSC--------CCBC---EEEEEECSSEEEEEECCCCCSHHHHHHCC
T ss_pred             ccCccccceECCCcCcccccceeecccccceeeccc--------CcCc---eeEeeecCCCceEEEEEecCCCeeEEEec
Confidence            000000000000000000000000   000000000        0000   0011223333444444443   4578888


Q ss_pred             ecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeC-CCceEEEEeecCceEEEecccccce
Q 013274          328 GSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC-MTAVKAFDIWSGKTCLTFRGHYEYV  399 (446)
Q Consensus       328 s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~l~gH~~~v  399 (446)
                      +.++.|++||+.+++...  +      ......++++||+..++++. .+.+++||+.+++...++..+..++
T Consensus       295 ~~~~~i~~~d~~~~~~~~--~------~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d~~~~  359 (360)
T d1k32a3         295 PEKGVLLKYDVKTRKVTE--V------KNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPL  359 (360)
T ss_dssp             CCCEEEEEEETTTCCEEE--E------EEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEECCCCSSCE
T ss_pred             CCCCEEEEEECCCCeEEE--e------cCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEEEeccccc
Confidence            999999999998865321  1      11234678999998887765 4689999999998888887776654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.84  E-value=2.8e-19  Score=166.30  Aligned_cols=301  Identities=13%  Similarity=0.095  Sum_probs=186.1

Q ss_pred             EEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEE-EEEeCCCe
Q 013274           49 LQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF-VTGSYDHY  127 (446)
Q Consensus        49 l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l-~s~s~D~~  127 (446)
                      ++|++ ++++|++++.|++|.+||+++++...            ..    ...|...+.++.++| |++++ ++++.|+.
T Consensus         2 ~a~~~-~~~~l~~~~~~~~v~v~D~~t~~~~~------------t~----~~~~~~~p~~l~~sp-DG~~l~v~~~~~~~   63 (346)
T d1jmxb_           2 PALKA-GHEYMIVTNYPNNLHVVDVASDTVYK------------SC----VMPDKFGPGTAMMAP-DNRTAYVLNNHYGD   63 (346)
T ss_dssp             CCCCT-TCEEEEEEETTTEEEEEETTTTEEEE------------EE----ECSSCCSSCEEEECT-TSSEEEEEETTTTE
T ss_pred             ccCCC-CCcEEEEEcCCCEEEEEECCCCCEEE------------EE----EcCCCCCcceEEECC-CCCEEEEEECCCCc
Confidence            45765 68999999999999999998764310            00    013444566778876 77765 66778999


Q ss_pred             EEEEECCCCeeeEEEecCCc-------eEEeeeccCCCCceEEEEe------------eCCCcEEEEeCCCCceeeeeeC
Q 013274          128 VKVWDTNCTRVVMNFKMPGK-------VYRTAMSPLAASHMLIAAG------------TEDVQVRLCDIASGAISQTLSG  188 (446)
Q Consensus       128 i~iWd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~lasg------------s~d~~v~vwd~~~~~~~~~l~~  188 (446)
                      |.+||+.+++.+..+.....       ...++++++.   ..++++            ..+..+.+||..+++....+..
T Consensus        64 v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG---~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  140 (346)
T d1jmxb_          64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDG---KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT  140 (346)
T ss_dssp             EEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTS---SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE
T ss_pred             EEEEeCccCeeeeeecccccccccCCceEEEEEecCC---CEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEe
Confidence            99999999998877764322       2345566543   233332            3477899999998876655443


Q ss_pred             C--CCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCc
Q 013274          189 H--RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAP  266 (446)
Q Consensus       189 h--~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (446)
                      +  ...+..+.+++++. ++++   ++.+.+||+.++..+..+.......+.                            
T Consensus       141 ~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------  188 (346)
T d1jmxb_         141 FPMPRQVYLMRAADDGS-LYVA---GPDIYKMDVKTGKYTVALPLRNWNRKG----------------------------  188 (346)
T ss_dssp             EECCSSCCCEEECTTSC-EEEE---SSSEEEECTTTCCEEEEECSTTCCCTT----------------------------
T ss_pred             eeccCceEEEEecCCCE-EEEe---CCcceEEEccCCCEEEEEecCCCccce----------------------------
Confidence            3  34566677777765 4444   256899999887766655322111000                            


Q ss_pred             cccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeee
Q 013274          267 QKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLV  346 (446)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~  346 (446)
                                ..++.+......      ...       ............+.+....++++..+..+.+||+.++.....
T Consensus       189 ----------~~~~~~~~~~~~------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (346)
T d1jmxb_         189 ----------YSAPDVLYFWPH------QSP-------RHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQ  245 (346)
T ss_dssp             ----------BCCCBCCCCCCC------CCT-------TCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEE
T ss_pred             ----------EEeccccEEEEE------ecC-------CCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEE
Confidence                      000000000000      000       000000012223345566778888889999999988753222


Q ss_pred             eeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCC
Q 013274          347 NFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPS  426 (446)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~  426 (446)
                      .   ............++++...++....+.+.+||..+++.+..+. +...+.+++|||||++|++++.|+.|+|||++
T Consensus       246 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~  321 (346)
T d1jmxb_         246 E---FADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPD  321 (346)
T ss_dssp             E---EEECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETT
T ss_pred             E---eecccceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECc
Confidence            1   1112233444566666666666666789999999999887765 34569999999999999999999999999998


Q ss_pred             CCC
Q 013274          427 RHI  429 (446)
Q Consensus       427 ~~~  429 (446)
                      +.+
T Consensus       322 t~~  324 (346)
T d1jmxb_         322 TLE  324 (346)
T ss_dssp             TTE
T ss_pred             cCC
Confidence            764

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.83  E-value=7.2e-18  Score=163.01  Aligned_cols=149  Identities=13%  Similarity=0.002  Sum_probs=107.0

Q ss_pred             CEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCeEEEEECCCC
Q 013274           57 RYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCT  136 (446)
Q Consensus        57 ~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~  136 (446)
                      -++|+.+.||+|.|||.++++...                 ....| ..+..+.|+| |++++++++.|++|++||+.++
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~-----------------~~~~g-~~~~~v~fSp-DG~~l~~~s~dg~v~~~d~~t~   93 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKT-----------------VLDTG-YAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMK   93 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEE-----------------EEECS-SCEEEEEECT-TSCEEEEEETTSEEEEEETTSS
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEE-----------------EEeCC-CCeeEEEECC-CCCEEEEEcCCCCEEEEEeeCC
Confidence            346999999999999998765321                 11123 2477777776 9999999999999999999877


Q ss_pred             ee--eEEEecCCceEEeeecc-CCCCc-eEEEEeeCCCcEEEEeCCCCceeeeeeCC-----------CCCeEEEEEecC
Q 013274          137 RV--VMNFKMPGKVYRTAMSP-LAASH-MLIAAGTEDVQVRLCDIASGAISQTLSGH-----------RDGIMTVEWSTS  201 (446)
Q Consensus       137 ~~--~~~~~~~~~~~~~~~~~-~~~~~-~~lasgs~d~~v~vwd~~~~~~~~~l~~h-----------~~~v~sv~~s~~  201 (446)
                      +.  +..++.......+.+++ +.+++ .++++++.++.|++||.++++++..+..|           .+...++.++|+
T Consensus        94 ~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d  173 (432)
T d1qksa2          94 EPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHY  173 (432)
T ss_dssp             SCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSS
T ss_pred             CceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCC
Confidence            64  33333322233344333 22233 45688889999999999999888776554           345567888998


Q ss_pred             CCeEEEEeeCCCcEEEEEccCCc
Q 013274          202 SEWILVTGGCDGAIRFWDIRRAG  224 (446)
Q Consensus       202 ~~~~l~S~s~Dg~I~iWd~~~~~  224 (446)
                      ++.++++...++.|.+||..+.+
T Consensus       174 g~~~~vs~~~~~~i~~~d~~~~~  196 (432)
T d1qksa2         174 RPEFIVNVKETGKILLVDYTDLN  196 (432)
T ss_dssp             SSEEEEEETTTTEEEEEETTCSS
T ss_pred             CCEEEEEEccCCeEEEEEccCCC
Confidence            88777788888999999876543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.79  E-value=1.8e-16  Score=149.35  Aligned_cols=297  Identities=12%  Similarity=0.034  Sum_probs=184.6

Q ss_pred             CCCccceeEEEeecCCCCEEEEe-----eCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeec
Q 013274           40 SPHKGSINSLQVDLTEERYLLSG-----ASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPV  114 (446)
Q Consensus        40 ~~H~~~v~~l~~s~~~~~~l~s~-----s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~  114 (446)
                      ..|.+++.+++++|+ ++.++..     +.++.|.+||.++++...            .     ..++..  ..+.++| 
T Consensus        17 ~~~~~p~~~~a~spd-g~~~~~~~~~~~~~~~~v~v~D~~tg~~~~------------~-----~~~~~~--~~~a~Sp-   75 (373)
T d2madh_          17 GAADGPTNDEAPGAD-GRRSYINLPAHHSAIIQQWVLDAGSGSILG------------H-----VNGGFL--PNPVAAH-   75 (373)
T ss_pred             ccCCCCccccccCCC-CCEEEEEcccccCCCceEEEEECCCCCEEE------------E-----EeCCCC--ccEEEcC-
Confidence            368899999999975 5554432     334678899987764210            0     112221  1356776 


Q ss_pred             CCcEEEEEe----------CCCeEEEEECCCCeeeEEEecCCce--------EEeeeccCCCCceEEEEeeCCCcEEEEe
Q 013274          115 DTGLFVTGS----------YDHYVKVWDTNCTRVVMNFKMPGKV--------YRTAMSPLAASHMLIAAGTEDVQVRLCD  176 (446)
Q Consensus       115 ~~~~l~s~s----------~D~~i~iWd~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~lasgs~d~~v~vwd  176 (446)
                      |+++|++++          .|+.|++||+.+++++..+..+...        ..+.++++.. ..++.....+..+.+|+
T Consensus        76 DG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~~~v~~~~~~~~~~~~~  154 (373)
T d2madh_          76 SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNA-DLLFFQFAAGPAVGLVV  154 (373)
T ss_pred             CCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCC-cEEEEEEcCCCceEEee
Confidence            888888765          4688999999999988766544321        2234444322 12333334566778888


Q ss_pred             CCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccC
Q 013274          177 IASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAG  256 (446)
Q Consensus       177 ~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (446)
                      ..+++....    .....++.|+|+++..+++.+.|+++.+||...............                      
T Consensus       155 ~~~~~~~~~----~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~----------------------  208 (373)
T d2madh_         155 QGGSSDDQL----LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAML----------------------  208 (373)
T ss_pred             ccCCeEEEE----eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeecc----------------------
Confidence            777654433    344578889999988888999999999999876554332210000                      


Q ss_pred             CCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEE
Q 013274          257 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW  336 (446)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lW  336 (446)
                                                                      ..++......+.+++++.++ ..+.++++.+|
T Consensus       209 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~  239 (373)
T d2madh_         209 ------------------------------------------------TAAQNLLTQPAQANKSGRIV-WPVYSGKILQA  239 (373)
T ss_pred             ------------------------------------------------ccCccceeeeEEECCCceEE-EecCCceEEEE
Confidence                                                            00011113345566666554 45678889999


Q ss_pred             ecCcCceeeeee--------eEEEeecCCCeEEEEcCCCcEEEEe-----------CCCceEEEEeecCceEEEeccccc
Q 013274          337 DVESGRNTLVNF--------ETVRLQTSKPIQLATTQDPAVVFVP-----------CMTAVKAFDIWSGKTCLTFRGHYE  397 (446)
Q Consensus       337 d~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~d~~~~~~~~~l~gH~~  397 (446)
                      +..+........        ............++.++++..++..           ....+.+||..+++.+..+. |..
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~  318 (373)
T d2madh_         240 DISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGH  318 (373)
T ss_pred             EcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCC
Confidence            887653221110        0001111222334555555544332           23468899999999888775 556


Q ss_pred             ceEEEEEcCCCCE--EEEeeCCCcEEEeCCCCCCCCCcC
Q 013274          398 YVNCCCFSSQDQE--LYTGGNDRQILVWCPSRHISDGVD  434 (446)
Q Consensus       398 ~v~~~~fSpd~~~--lvtgs~D~~v~vW~~~~~~~~~~~  434 (446)
                      .+.+++|||||+.  +++++.|++|+|||..+.+..+.+
T Consensus       319 ~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~  357 (373)
T d2madh_         319 DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             CeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEE
Confidence            7899999999984  578999999999999977644433

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=3.2e-17  Score=151.62  Aligned_cols=284  Identities=11%  Similarity=0.155  Sum_probs=178.8

Q ss_pred             EEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEE-EEeCCCeEEEEECCCC
Q 013274           58 YLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV-TGSYDHYVKVWDTNCT  136 (446)
Q Consensus        58 ~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~-s~s~D~~i~iWd~~~~  136 (446)
                      .+|+++.|++|++||++.....         . ++     ....|.+.|.+++++| |+++|+ ++..|++|++|++...
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l---------~-~~-----~~~~~~~~v~~la~sp-DG~~L~v~~~~d~~i~~~~i~~~   69 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGAL---------T-LT-----QVVDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPD   69 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCE---------E-EE-----EEEECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTT
T ss_pred             EEEECCCCCcEEEEEEcCCCCe---------E-EE-----EEEcCCCCEeEEEEeC-CCCEEEEEECCCCeEEEEEEeCC
Confidence            5688899999999999753211         0 00     0124667788888887 788775 5556899999998765


Q ss_pred             eee----EEEecCCceEEeeeccCCCCceEEEEe-eCCCcEEEEeCCCCcee--eeeeCCCCCeEEEEEecCCCeEEEEe
Q 013274          137 RVV----MNFKMPGKVYRTAMSPLAASHMLIAAG-TEDVQVRLCDIASGAIS--QTLSGHRDGIMTVEWSTSSEWILVTG  209 (446)
Q Consensus       137 ~~~----~~~~~~~~~~~~~~~~~~~~~~~lasg-s~d~~v~vwd~~~~~~~--~~l~~h~~~v~sv~~s~~~~~~l~S~  209 (446)
                      ...    ...........+++++++   .+++++ ..++.|.+|+.......  .....+...+.++.|+|+++++++..
T Consensus        70 ~~~~~~~~~~~~~~~p~~l~~spDg---~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~  146 (333)
T d1ri6a_          70 DGALTFAAESALPGSLTHISTDHQG---QFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPA  146 (333)
T ss_dssp             TCCEEEEEEEECSSCCSEEEECTTS---SEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEE
T ss_pred             CCcEEEeeecccCCCceEEEEcCCC---CEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccc
Confidence            432    222333445567788754   344454 45779999998877543  33456777889999999999766555


Q ss_pred             eCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCc
Q 013274          210 GCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGS  289 (446)
Q Consensus       210 s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (446)
                      ..+..|.+|+..............                                                        
T Consensus       147 ~~~~~i~~~~~~~~~~~~~~~~~~--------------------------------------------------------  170 (333)
T d1ri6a_         147 LKQDRICLFTVSDDGHLVAQDPAE--------------------------------------------------------  170 (333)
T ss_dssp             GGGTEEEEEEECTTSCEEEEEEEE--------------------------------------------------------
T ss_pred             cccceeeEEEeccCCcceeeecee--------------------------------------------------------
Confidence            566789999976543211100000                                                        


Q ss_pred             cccccCCCcccccccccccccCeEEEEEccCCCEEEE-eecCCcEEEEecCcCceeeeeeeEEEee------cCCCeEEE
Q 013274          290 VRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLS-AGSDSRIRLWDVESGRNTLVNFETVRLQ------TSKPIQLA  362 (446)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~s-gs~D~~i~lWd~~~~~~~~~~~~~~~~~------~~~~~~~~  362 (446)
                                    ....+......++|++++.++.. ....+...+|++................      ...+...+
T Consensus       171 --------------~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (333)
T d1ri6a_         171 --------------VTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIH  236 (333)
T ss_dssp             --------------EECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEE
T ss_pred             --------------eeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEE
Confidence                          00011223577899999987654 4566678888876543222111111111      12234567


Q ss_pred             EcCCCcEEEEeC--CCceEEEEeecCceEEEecc---cccceEEEEEcCCCCEEEE-eeCCCcEEEeCC--CCCCC
Q 013274          363 TTQDPAVVFVPC--MTAVKAFDIWSGKTCLTFRG---HYEYVNCCCFSSQDQELYT-GGNDRQILVWCP--SRHIS  430 (446)
Q Consensus       363 ~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~l~g---H~~~v~~~~fSpd~~~lvt-gs~D~~v~vW~~--~~~~~  430 (446)
                      +++++..++...  .+.+.+|++........+.+   +...+.+++|||||++|+. ++.+++|+||++  +++++
T Consensus       237 ~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         237 ITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             EecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcE
Confidence            888888776653  35788999876554433333   3456789999999998765 556799999944  45543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.78  E-value=5e-16  Score=141.14  Aligned_cols=265  Identities=15%  Similarity=0.153  Sum_probs=182.5

Q ss_pred             ccceeccccceeEeC-CCccceeEEEeecCCCCEE-EEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCcc
Q 013274           26 RLSTLQLSNYKEIVS-PHKGSINSLQVDLTEERYL-LSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHK  103 (446)
Q Consensus        26 ~l~~~~~~~~~~~~~-~H~~~v~~l~~s~~~~~~l-~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~  103 (446)
                      .+..+++.+.+.+.. +..+....|+|+| +|++| ++++.+++|++||+.+++..            ..     ...|.
T Consensus        13 ~v~v~D~~t~~~~~~i~~g~~p~~va~sp-dG~~l~v~~~~~~~i~v~d~~t~~~~------------~~-----~~~~~   74 (301)
T d1l0qa2          13 NISVIDVTSNKVTATIPVGSNPMGAVISP-DGTKVYVANAHSNDVSIIDTATNNVI------------AT-----VPAGS   74 (301)
T ss_dssp             EEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEEGGGTEEEEEETTTTEEE------------EE-----EECSS
T ss_pred             EEEEEECCCCeEEEEEECCCCceEEEEeC-CCCEEEEEECCCCEEEEEECCCCcee------------ee-----eeccc
Confidence            344445444433211 2334578999997 56655 68889999999999876421            01     11222


Q ss_pred             ccEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCcee
Q 013274          104 YAISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAIS  183 (446)
Q Consensus       104 ~~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~  183 (446)
                       .+..+.+.+.....++++..++.+.+|+..+++....+........+.++++.  ..+++++..+..+.+|+..++...
T Consensus        75 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg--~~~~~~~~~~~~~~~~~~~~~~~~  151 (301)
T d1l0qa2          75 -SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDG--KKLYVTNNGDKTVSVINTVTKAVI  151 (301)
T ss_dssp             -SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTS--SEEEEEETTTTEEEEEETTTTEEE
T ss_pred             -cccccccccccccccccccccceeeecccccceeeeeccccccceEEEeecCC--Ceeeeeeccccceeeeecccccee
Confidence             34566777644446677788899999999999988888877777778888754  356677788899999999999888


Q ss_pred             eeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCC
Q 013274          184 QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKP  263 (446)
Q Consensus       184 ~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (446)
                      ..+..+ ..+..+.++|+++.++++...++.+.+|+.........+                                  
T Consensus       152 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------  196 (301)
T d1l0qa2         152 NTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTV----------------------------------  196 (301)
T ss_dssp             EEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE----------------------------------
T ss_pred             eecccC-CCceEEEeeccccceeeecccccccccccccceeeeecc----------------------------------
Confidence            877755 457889999999876655555677888876544322111                                  


Q ss_pred             CCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeec---CCcEEEEecCc
Q 013274          264 RAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS---DSRIRLWDVES  340 (446)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~---D~~i~lWd~~~  340 (446)
                                                                 .+...+..++|+++|..++.++.   +++|++||+.+
T Consensus       197 -------------------------------------------~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t  233 (301)
T d1l0qa2         197 -------------------------------------------KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT  233 (301)
T ss_dssp             -------------------------------------------ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT
T ss_pred             -------------------------------------------cccCCcceeeccccccccccccccceeeeeeeeecCC
Confidence                                                       01123567889999998765543   46899999998


Q ss_pred             CceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeC--CCceEEEEeecCceEEEecc
Q 013274          341 GRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC--MTAVKAFDIWSGKTCLTFRG  394 (446)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~l~g  394 (446)
                      ++.. .   .+. ....+..++++|++..+++++  .+.+.+||+.+++.+.++..
T Consensus       234 ~~~~-~---~~~-~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v  284 (301)
T d1l0qa2         234 NKIT-A---RIP-VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV  284 (301)
T ss_dssp             TEEE-E---EEE-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             CeEE-E---EEc-CCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence            7532 1   111 123456789999998776543  46899999999998887753

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=3.1e-16  Score=146.49  Aligned_cols=283  Identities=12%  Similarity=0.116  Sum_probs=172.7

Q ss_pred             eecCCCCEEEEe-----eCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEE---
Q 013274           51 VDLTEERYLLSG-----ASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG---  122 (446)
Q Consensus        51 ~s~~~~~~l~s~-----s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~---  122 (446)
                      .+| +++.+...     +.+.+|.+||..+++...            .+     ..+  .+..++++| |+++|+.+   
T Consensus         9 ~sp-dg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~------------~~-----~~g--~~~~~a~Sp-Dg~~l~v~~~~   67 (355)
T d2bbkh_           9 PAP-DARRVYVNDPAHFAAVTQQFVIDGEAGRVIG------------MI-----DGG--FLPNPVVAD-DGSFIAHASTV   67 (355)
T ss_dssp             CCC-CTTEEEEEECGGGCSSEEEEEEETTTTEEEE------------EE-----EEC--SSCEEEECT-TSSCEEEEEEE
T ss_pred             eCC-CCCEEEEEecccCCCcCeEEEEECCCCcEEE------------EE-----ECC--CCCceEEcC-CCCEEEEEeCC
Confidence            355 56655443     456789999998764210            00     111  122456776 78777654   


Q ss_pred             -------eCCCeEEEEECCCCeeeEEEecCC--------ceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeee
Q 013274          123 -------SYDHYVKVWDTNCTRVVMNFKMPG--------KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS  187 (446)
Q Consensus       123 -------s~D~~i~iWd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~  187 (446)
                             +.|+.|++||+.+++.+..+....        ....++++++.. ..+++..+.+..+.+||..+++.+..+.
T Consensus        68 ~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~  146 (355)
T d2bbkh_          68 FSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK-TLLFYQFSPAPAVGVVDLEGKAFKRMLD  146 (355)
T ss_dssp             EEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS-EEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred             CccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCC-eeEEecCCCCceeeeeecCCCcEeeEEe
Confidence                   458899999999999887665321        122345665432 2233344567789999999999888776


Q ss_pred             CCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCcc
Q 013274          188 GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQ  267 (446)
Q Consensus       188 ~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (446)
                      .+....   .+..... .+++.+.|+...++..........+.....                                 
T Consensus       147 ~~~~~~---~~~~~~~-~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~---------------------------------  189 (355)
T d2bbkh_         147 VPDCYH---IFPTAPD-TFFMHCRDGSLAKVAFGTEGTPEITHTEVF---------------------------------  189 (355)
T ss_dssp             CCSEEE---EEEEETT-EEEEEETTSCEEEEECCSSSCCEEEECCCC---------------------------------
T ss_pred             cCCcce---EeecCCc-ceEEEcCCCCEEEEEecCCCeEEEEecccc---------------------------------
Confidence            544322   1111222 245666777776666543322111110000                                 


Q ss_pred             ccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeee
Q 013274          268 KRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVN  347 (446)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~  347 (446)
                                                           ...+...+....+++++..++.++.++++++|++..++.....
T Consensus       190 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  232 (355)
T d2bbkh_         190 -------------------------------------HPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLP  232 (355)
T ss_dssp             -------------------------------------SCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECC
T ss_pred             -------------------------------------cceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEe
Confidence                                                 0011112333456778888888999999999999886533221


Q ss_pred             eeEE--------EeecCCCeEEEEcCCCcEEEEeCC-----------CceEEEEeecCceEEEecccccceEEEEEcCCC
Q 013274          348 FETV--------RLQTSKPIQLATTQDPAVVFVPCM-----------TAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQD  408 (446)
Q Consensus       348 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~  408 (446)
                      ....        .........+++++++..+++...           ..+.+||..+++.+.++..+ ..+.+++|||||
T Consensus       233 ~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~-~~~~~~a~spDG  311 (355)
T d2bbkh_         233 AVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDE  311 (355)
T ss_dssp             CEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSS
T ss_pred             ccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCC-CCEEEEEEcCCC
Confidence            1110        011223345778888887765421           25889999999988887644 458999999999


Q ss_pred             C--EEEEeeCCCcEEEeCCCCCCC
Q 013274          409 Q--ELYTGGNDRQILVWCPSRHIS  430 (446)
Q Consensus       409 ~--~lvtgs~D~~v~vW~~~~~~~  430 (446)
                      +  ++++++.|++|.|||+.+++.
T Consensus       312 ~~~l~v~~~~d~~i~v~D~~tg~~  335 (355)
T d2bbkh_         312 KPLLYALSTGDKTLYIHDAESGEE  335 (355)
T ss_dssp             SCEEEEEETTTTEEEEEETTTCCE
T ss_pred             CeEEEEEECCCCEEEEEECCCCCE
Confidence            8  456888899999999987763

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.66  E-value=6.2e-15  Score=135.79  Aligned_cols=224  Identities=11%  Similarity=0.097  Sum_probs=149.3

Q ss_pred             cEEEEEeCCCeEEEEECCCCeeeEEEecCC---ceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCC--
Q 013274          117 GLFVTGSYDHYVKVWDTNCTRVVMNFKMPG---KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRD--  191 (446)
Q Consensus       117 ~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~--  191 (446)
                      .++++++.|++|++||+++++++..+..+.   .+..++++|+.  ..++++++.++.|.+||+++++.+..+..+..  
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg--~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~   79 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGG--RIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTS--SEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCC--CEEEEEECCCCeEEEEECCCCcEEEEEecCCCcc
Confidence            479999999999999999999998887543   24567888753  34557788899999999999998888766543  


Q ss_pred             ---CeEEEEEecCCCeEEEEeeC------------CCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccC
Q 013274          192 ---GIMTVEWSTSSEWILVTGGC------------DGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAG  256 (446)
Q Consensus       192 ---~v~sv~~s~~~~~~l~S~s~------------Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (446)
                         .+..++|+|+++++ ++++.            ++.+.+||..++.+.+.+                           
T Consensus        80 ~~~~~~~v~~s~dg~~l-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---------------------------  131 (337)
T d1pbyb_          80 RVKSLFGAALSPDGKTL-AIYESPVRLELTHFEVQPTRVALYDAETLSRRKAF---------------------------  131 (337)
T ss_dssp             EEECTTCEEECTTSSEE-EEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEE---------------------------
T ss_pred             cccceeeEEEcCCCcEE-EEeecCCcceeeeccccccceeeccccCCeEEEec---------------------------
Confidence               34578999999875 44443            455556665544332221                           


Q ss_pred             CCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEE
Q 013274          257 QNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLW  336 (446)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lW  336 (446)
                                                                        .+...+..++|+|||+++++++.|  +.+|
T Consensus       132 --------------------------------------------------~~~~~~~~~~~s~dg~~l~~~~~~--~~~~  159 (337)
T d1pbyb_         132 --------------------------------------------------EAPRQITMLAWARDGSKLYGLGRD--LHVM  159 (337)
T ss_dssp             --------------------------------------------------ECCSSCCCEEECTTSSCEEEESSS--EEEE
T ss_pred             --------------------------------------------------cccCCceEEEEcCCCCEEEEEcCC--ccee
Confidence                                                              112335678999999999988654  7889


Q ss_pred             ecCcCceeeeeeeEEEeecCCCeEEEEcC----------CCc-EEE---Ee-----------CCCceEEEEeecCceE-E
Q 013274          337 DVESGRNTLVNFETVRLQTSKPIQLATTQ----------DPA-VVF---VP-----------CMTAVKAFDIWSGKTC-L  390 (446)
Q Consensus       337 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~-~~~---~~-----------~~~~~~~~d~~~~~~~-~  390 (446)
                      |+.+++.... +   .... ......+.+          ... ...   ..           ....+.+|++.+++.. .
T Consensus       160 d~~~~~~~~~-~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (337)
T d1pbyb_         160 DPEAGTLVED-K---PIQS-WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMR  234 (337)
T ss_dssp             ETTTTEEEEE-E---CSTT-TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEE
T ss_pred             eeecCcEEEE-e---ecCC-ccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEE
Confidence            9987643211 1   0000 000000000          000 000   00           0124677888777754 4


Q ss_pred             EecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCC
Q 013274          391 TFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHI  429 (446)
Q Consensus       391 ~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~  429 (446)
                      .+..|...+.+++++|++.+++.+  |+.|++|++.+..
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~  271 (337)
T d1pbyb_         235 EVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNA  271 (337)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTE
T ss_pred             EecCCCcceEEEEecccceEEEEc--cccEEEEECCCCc
Confidence            567788889999999999999876  5889999998664

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=9.5e-12  Score=114.02  Aligned_cols=264  Identities=13%  Similarity=0.157  Sum_probs=160.9

Q ss_pred             CCccceeEEEeecCCCCEE-EEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEE
Q 013274           41 PHKGSINSLQVDLTEERYL-LSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLF  119 (446)
Q Consensus        41 ~H~~~v~~l~~s~~~~~~l-~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l  119 (446)
                      .|.+.|..|+|+| +|++| ++++.|++|++|++.......          ....    ...+...+..+.++| ++++|
T Consensus        34 ~~~~~v~~la~sp-DG~~L~v~~~~d~~i~~~~i~~~~~~~----------~~~~----~~~~~~~p~~l~~sp-Dg~~l   97 (333)
T d1ri6a_          34 DVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGAL----------TFAA----ESALPGSLTHISTDH-QGQFV   97 (333)
T ss_dssp             ECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCE----------EEEE----EEECSSCCSEEEECT-TSSEE
T ss_pred             cCCCCEeEEEEeC-CCCEEEEEECCCCeEEEEEEeCCCCcE----------EEee----ecccCCCceEEEEcC-CCCEE
Confidence            6789999999997 57777 556669999999987543210          0000    012233455667776 88888


Q ss_pred             EEEeC-CCeEEEEECCCCeeeEEEe---cCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeee------eeCC
Q 013274          120 VTGSY-DHYVKVWDTNCTRVVMNFK---MPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQT------LSGH  189 (446)
Q Consensus       120 ~s~s~-D~~i~iWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~------l~~h  189 (446)
                      ++++. +++|.+|+...........   ....+..+.++++..  .++.....+..|.+|+..+......      ...+
T Consensus        98 ~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  175 (333)
T d1ri6a_          98 FVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNR--TLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE  175 (333)
T ss_dssp             EEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSS--EEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECST
T ss_pred             eecccCCCceeeeccccccceecccccCCCccceEEEeeecce--eeeccccccceeeEEEeccCCcceeeeceeeeeec
Confidence            88875 7799999987665543332   233455666776532  3445555667899999877643221      1234


Q ss_pred             CCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCcccc
Q 013274          190 RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKR  269 (446)
Q Consensus       190 ~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (446)
                      ......++|++++...+++....+...+|+...........                                       
T Consensus       176 g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------------------------------------  216 (333)
T d1ri6a_         176 GAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECV---------------------------------------  216 (333)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEE---------------------------------------
T ss_pred             CCCccEEEEeccceeEEeeccccCceEEEeecccccceeee---------------------------------------
Confidence            45568899999988766666677788888864321100000                                       


Q ss_pred             ccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEE-EeecCCcEEEEecCcCceeeeee
Q 013274          270 SANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLL-SAGSDSRIRLWDVESGRNTLVNF  348 (446)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~-sgs~D~~i~lWd~~~~~~~~~~~  348 (446)
                                  .....        .+       ...........+++++|++++. ++..++++.+|++........ .
T Consensus       217 ------------~~~~~--------~~-------~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  268 (333)
T d1ri6a_         217 ------------QTLDM--------MP-------ENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLS-K  268 (333)
T ss_dssp             ------------EEEEC--------SC-------TTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEE-E
T ss_pred             ------------eeeee--------ee-------cCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEE-E
Confidence                        00000        00       0001123456788999998654 556678999999876432221 1


Q ss_pred             eEEEeecCCCeEEEEcCCCcEEEEeCC--CceEEEEee--cCceE
Q 013274          349 ETVRLQTSKPIQLATTQDPAVVFVPCM--TAVKAFDIW--SGKTC  389 (446)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~--~~~~~  389 (446)
                      .........+..++++|++..+++++.  +.+++|++.  +|++.
T Consensus       269 ~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~  313 (333)
T d1ri6a_         269 EGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLH  313 (333)
T ss_dssp             EEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEE
T ss_pred             EEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEE
Confidence            111222345667899999998888753  578998664  55543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.50  E-value=2.8e-13  Score=127.28  Aligned_cols=290  Identities=11%  Similarity=0.049  Sum_probs=168.9

Q ss_pred             CCccceeEEEeecCCCC--EEEEeeCCCcEEEE--EcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCC
Q 013274           41 PHKGSINSLQVDLTEER--YLLSGASDSSVAVY--DVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDT  116 (446)
Q Consensus        41 ~H~~~v~~l~~s~~~~~--~l~s~s~Dg~i~lW--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~  116 (446)
                      .+.+....++..++..+  +.++++.+++.++|  |..+++...            .     ..++...  .+.++| |+
T Consensus        17 ~~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~------------~-----~~~~~~~--~~a~sp-Dg   76 (368)
T d1mdah_          17 ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLG------------H-----SLGAFLS--LAVAGH-SG   76 (368)
T ss_dssp             CCCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEE------------E-----EEECTTC--EEEECT-TS
T ss_pred             ccCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEE------------E-----EeCCCCC--cceECC-CC
Confidence            45566666666654322  23345666665554  766543210            0     0122222  245555 77


Q ss_pred             cEEEEEe----------CCCeEEEEECCCCeeeEEEecCCc--------eEEeeeccCCCCceEEEEeeCCCcEEEEeCC
Q 013274          117 GLFVTGS----------YDHYVKVWDTNCTRVVMNFKMPGK--------VYRTAMSPLAASHMLIAAGTEDVQVRLCDIA  178 (446)
Q Consensus       117 ~~l~s~s----------~D~~i~iWd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~  178 (446)
                      +.++.++          .|++|++||..+++++..+..+..        ...+++++++.  .++++...++.+.+||+.
T Consensus        77 ~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk--~l~va~~~~~~v~~~d~~  154 (368)
T d1mdah_          77 SDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA--CLLFFLFGSSAAAGLSVP  154 (368)
T ss_dssp             SCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSS--CEEEEECSSSCEEEEEET
T ss_pred             CEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCC--EEEEEeCCCCeEEEEECC
Confidence            7776644          588999999999998877654321        23466777543  344444567999999999


Q ss_pred             CCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCC
Q 013274          179 SGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQN  258 (446)
Q Consensus       179 ~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (446)
                      +++....+..+.....    .|.++..+++.+.||++.+|++.............                         
T Consensus       155 ~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~-------------------------  205 (368)
T d1mdah_         155 GASDDQLTKSASCFHI----HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQ-------------------------  205 (368)
T ss_dssp             TTEEEEEEECSSCCCC----EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCC-------------------------
T ss_pred             CCcEeEEeeccCcceE----ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecc-------------------------
Confidence            9998888876655432    22333456788999999999876543211110000                         


Q ss_pred             CCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEec
Q 013274          259 SSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDV  338 (446)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~  338 (446)
                                                                   ....+...+..+.+.+++..+.+.  ++.+.++++
T Consensus       206 ---------------------------------------------~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~  238 (368)
T d1mdah_         206 ---------------------------------------------CTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDI  238 (368)
T ss_dssp             ---------------------------------------------SCTTSCBCSCCEEETTTTEEEECB--SSCCEEEEC
T ss_pred             ---------------------------------------------cccccccceeecccccCcEEEEec--CCCEEEEee
Confidence                                                         000111122334455555544432  344555554


Q ss_pred             CcCceeeeeee--------EEEeecCCCeEEEEcCCCcEEEEeCC----------CceEEEEeecCceEEEecccccceE
Q 013274          339 ESGRNTLVNFE--------TVRLQTSKPIQLATTQDPAVVFVPCM----------TAVKAFDIWSGKTCLTFRGHYEYVN  400 (446)
Q Consensus       339 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~d~~~~~~~~~l~gH~~~v~  400 (446)
                      ..+........        ...........+++++++..+++...          ..+.+||..+++.+.++..+ ..+.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~  317 (368)
T d1mdah_         239 PAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG-HDSD  317 (368)
T ss_dssp             CSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE-EEEC
T ss_pred             cCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCC-Ccee
Confidence            44322111000        00011223345677888777766421          24778999999988777644 5789


Q ss_pred             EEEEcCCCCE--EEEeeCCCcEEEeCCCCCC
Q 013274          401 CCCFSSQDQE--LYTGGNDRQILVWCPSRHI  429 (446)
Q Consensus       401 ~~~fSpd~~~--lvtgs~D~~v~vW~~~~~~  429 (446)
                      .++|||||+.  +++++.|++|+|||+.+.+
T Consensus       318 ~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk  348 (368)
T d1mdah_         318 AIIAAQDGASDNYANSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             EEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred             EEEECCCCCEEEEEEeCCCCeEEEEECCCCC
Confidence            9999999973  5688889999999998775

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.50  E-value=1.8e-12  Score=119.34  Aligned_cols=295  Identities=8%  Similarity=-0.032  Sum_probs=172.1

Q ss_pred             ccceeccccceeE--e-CCCccceeEEEeecCCCCEE-EEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccC
Q 013274           26 RLSTLQLSNYKEI--V-SPHKGSINSLQVDLTEERYL-LSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHG  101 (446)
Q Consensus        26 ~l~~~~~~~~~~~--~-~~H~~~v~~l~~s~~~~~~l-~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  101 (446)
                      .+..+++.+.+.+  + .+|...+.+|.|+| |+++| ++++.++.|.+||+.++....          .+.. ......
T Consensus        19 ~v~v~D~~t~~~~~t~~~~~~~~p~~l~~sp-DG~~l~v~~~~~~~v~~~d~~t~~~~~----------~~~~-~~~~~~   86 (346)
T d1jmxb_          19 NLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTF----------HANL-SSVPGE   86 (346)
T ss_dssp             EEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEE----------EEES-CCSTTE
T ss_pred             EEEEEECCCCCEEEEEEcCCCCCcceEEECC-CCCEEEEEECCCCcEEEEeCccCeeee----------eecc-cccccc
Confidence            4445555544433  2 36777889999997 56654 777889999999998764210          0000 001112


Q ss_pred             ccccEeEEEEeecCCcEEEEEe------------CCCeEEEEECCCCeeeEEE---ecCCceEEeeeccCCCCceEEEEe
Q 013274          102 HKYAISSAIWYPVDTGLFVTGS------------YDHYVKVWDTNCTRVVMNF---KMPGKVYRTAMSPLAASHMLIAAG  166 (446)
Q Consensus       102 h~~~V~~~~~~~~~~~~l~s~s------------~D~~i~iWd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~lasg  166 (446)
                      +...+..+.++| |+++++.++            .+..+.+||..+++....+   ..+.....+...+   +..++++ 
T Consensus        87 ~~~~~~~v~~s~-DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-  161 (346)
T d1jmxb_          87 VGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD---DGSLYVA-  161 (346)
T ss_dssp             EEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT---TSCEEEE-
T ss_pred             cCCceEEEEEec-CCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecC---CCEEEEe-
Confidence            223344556665 777776664            4788999998776544322   2222222223332   2334444 


Q ss_pred             eCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccc
Q 013274          167 TEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRK  246 (446)
Q Consensus       167 s~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (446)
                        +..+.+||+.+++....+..+. ....+.++|++..+++....++.+.+++.......     ....      .....
T Consensus       162 --~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~------~~~~~  227 (346)
T d1jmxb_         162 --GPDIYKMDVKTGKYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKD-----DKQD------PATAD  227 (346)
T ss_dssp             --SSSEEEECTTTCCEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC------------------CCCE
T ss_pred             --CCcceEEEccCCCEEEEEecCC-CccceEEeccccEEEEEecCCCceEeeeeeeeecc-----Ccee------Eeecc
Confidence              2468999999999888877553 34566678888765566677778887764321000     0000      00000


Q ss_pred             eeeccccccCCCCCcCCCCccccccCCCceeecccceeec-CCccccccCCCcccccccccccccCeEEEEEccCCCEEE
Q 013274          247 VSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPA-KGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLL  325 (446)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~  325 (446)
                      .                              ......... .+...          ......|...+..+.+++++.+++
T Consensus       228 ~------------------------------~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  267 (346)
T d1jmxb_         228 L------------------------------LYGYLSVDLKTGKTH----------TQEFADLTELYFTGLRSPKDPNQI  267 (346)
T ss_dssp             E------------------------------EEEEEEEETTTCCEE----------EEEEEECSSCEEEEEECSSCTTEE
T ss_pred             C------------------------------CceEEEEECCCCceE----------EEEeecccceeEEEEEeCCCCEEE
Confidence            0                              000000000 00000          001234556688889999998888


Q ss_pred             EeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceEEEeccccc
Q 013274          326 SAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTCLTFRGHYE  397 (446)
Q Consensus       326 sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~gH~~  397 (446)
                      .... +.|++||+.+++...    ... ....+..+++++|+..+++++. +.+++||+.+++.+.++..+.+
T Consensus       268 ~~~~-~~v~v~d~~~~~~~~----~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g  334 (346)
T d1jmxb_         268 YGVL-NRLAKYDLKQRKLIK----AAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGG  334 (346)
T ss_dssp             EEEE-SEEEEEETTTTEEEE----EEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSSS
T ss_pred             EecC-CeEEEEECCCCcEEE----EEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECCCC
Confidence            7764 579999998875321    111 1335677999999999888754 6799999999999888875443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.48  E-value=8e-12  Score=115.81  Aligned_cols=295  Identities=11%  Similarity=-0.007  Sum_probs=165.7

Q ss_pred             cceeccccceeEeCCCccceeEEEeecCCCCEEEEe----------eCCCcEEEEEcccCcCCCCCCccccccceEEecc
Q 013274           27 LSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLLSG----------ASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDK   96 (446)
Q Consensus        27 l~~~~~~~~~~~~~~H~~~v~~l~~s~~~~~~l~s~----------s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~   96 (446)
                      +..++....+.+-+-+.+.+..++||| ++++|+.+          +.|+.|++||+.+++...          .+....
T Consensus        30 v~v~D~~tg~~~~~~~~g~~~~~a~Sp-Dg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~----------~~~~~~   98 (355)
T d2bbkh_          30 QFVIDGEAGRVIGMIDGGFLPNPVVAD-DGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTA----------DIELPD   98 (355)
T ss_dssp             EEEEETTTTEEEEEEEECSSCEEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEE----------EEEETT
T ss_pred             EEEEECCCCcEEEEEECCCCCceEEcC-CCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEE----------EEecCC
Confidence            334455555544333445666899997 56666543          458899999998764211          000100


Q ss_pred             ccccCccccEeEEEEeecCCcEEEEE--eCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEE
Q 013274           97 QHEHGHKYAISSAIWYPVDTGLFVTG--SYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRL  174 (446)
Q Consensus        97 ~~~~gh~~~V~~~~~~~~~~~~l~s~--s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~v  174 (446)
                      ............+.+++ ++++++.+  +.+..+.+|+..+++.+..+............     ....+..+.|+...+
T Consensus        99 ~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~dg~~~~  172 (355)
T d2bbkh_          99 APRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTA-----PDTFFMHCRDGSLAK  172 (355)
T ss_dssp             CCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEE-----TTEEEEEETTSCEEE
T ss_pred             cceeecCCCCceEEEec-CCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecC-----CcceEEEcCCCCEEE
Confidence            11111111222345665 77776655  45688999999999988877655433211111     112233345555555


Q ss_pred             EeCCCCceeeee------eCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCccccccee
Q 013274          175 CDIASGAISQTL------SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVS  248 (446)
Q Consensus       175 wd~~~~~~~~~l------~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (446)
                      +..........+      ..+...+....+.+++.. ++.++.++.+.+|++..+... .++.....             
T Consensus       173 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~-------------  237 (355)
T d2bbkh_         173 VAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGR-LVWPTYTGKIHQIDLSSGDAK-FLPAVEAL-------------  237 (355)
T ss_dssp             EECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTE-EEEEBTTSEEEEEECTTSSCE-ECCCEESS-------------
T ss_pred             EEecCCCeEEEEecccccceecceeeeccccCCCCe-EEEecCCCeEEEEecCCCcEE-EEeccCCc-------------
Confidence            544333221111      123444556677777765 578899999999998765321 11000000             


Q ss_pred             eccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEee
Q 013274          249 ISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAG  328 (446)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs  328 (446)
                                                               ......         ..........+++++++..++...
T Consensus       238 -----------------------------------------~~~~~~---------~~~~p~~~~~~~~~~d~~~~~~~~  267 (355)
T d2bbkh_         238 -----------------------------------------TEAERA---------DGWRPGGWQQVAYHRALDRIYLLV  267 (355)
T ss_dssp             -----------------------------------------CHHHHH---------TTEEECSSSCEEEETTTTEEEEEE
T ss_pred             -----------------------------------------ccceEe---------eeeeccceEEEEEeCCCCeEEEEe
Confidence                                                     000000         000011123467888888776554


Q ss_pred             cC----------CcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcE-EEE-eC-CCceEEEEeecCceEEEeccc
Q 013274          329 SD----------SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAV-VFV-PC-MTAVKAFDIWSGKTCLTFRGH  395 (446)
Q Consensus       329 ~D----------~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~-~~~~~~~d~~~~~~~~~l~gH  395 (446)
                      .+          .+|.+||+.+++.. ..+..    ...+..++++||+.. +++ +. ...+.+||+.+++.++++.++
T Consensus       268 ~~~~~~~~~~~~~~v~v~d~~t~~~~-~~~~~----~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~  342 (355)
T d2bbkh_         268 DQRDEWRHKTASRFVVVLDAKTGERL-AKFEM----GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL  342 (355)
T ss_dssp             EECCTTCTTSCEEEEEEEETTTCCEE-EEEEE----EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred             ccCCceeecCCCCeEEEEeCCCCcEE-EEecC----CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCc
Confidence            43          46999999987532 11111    123456889999863 333 33 468999999999999999888


Q ss_pred             ccceEEEEEcCCC
Q 013274          396 YEYVNCCCFSSQD  408 (446)
Q Consensus       396 ~~~v~~~~fSpd~  408 (446)
                      -....++.+.++|
T Consensus       343 G~~p~~i~~~d~~  355 (355)
T d2bbkh_         343 GHGPQVITTADMG  355 (355)
T ss_dssp             CSSCCEEECCCCC
T ss_pred             CCCccEEEeCCCC
Confidence            7766777766543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.42  E-value=4.8e-10  Score=104.40  Aligned_cols=283  Identities=11%  Similarity=-0.033  Sum_probs=163.4

Q ss_pred             eeEEEeecCCCCEEEEee----------CCCcEEEEEcccCcCCCCCCcccccc-ceEEeccccccCccccEeEEEEeec
Q 013274           46 INSLQVDLTEERYLLSGA----------SDSSVAVYDVQRATDYEGGGHIAKHR-SVFVVDKQHEHGHKYAISSAIWYPV  114 (446)
Q Consensus        46 v~~l~~s~~~~~~l~s~s----------~Dg~i~lWd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~gh~~~V~~~~~~~~  114 (446)
                      ...+.|+| ||++|++++          .|+.|.+||+.+++....   +.... .....     ..+.   ..+.+++ 
T Consensus        68 ~~~~a~Sp-DG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~---~~~~~~~~~~~-----~~~~---~~~~~s~-  134 (373)
T d2madh_          68 LPNPVAAH-SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIAD---IELPDAPRFDV-----GPYS---WMNANTP-  134 (373)
T ss_pred             CccEEEcC-CCCEEEEEeecCCcccccccceEEEEEECCCCcEEEE---EecCCcceeEe-----ccCC---CcEEEEe-
Confidence            34799997 677887764          467899999987653110   00000 00000     0111   1244555 


Q ss_pred             CCcEEEEE--eCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCC---
Q 013274          115 DTGLFVTG--SYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGH---  189 (446)
Q Consensus       115 ~~~~l~s~--s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h---  189 (446)
                      +++.++..  ..+..+.+|+....+.......   ...+.+++..  ..++++.+.|+.+.+||..++........+   
T Consensus       135 dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~s~~g--~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~  209 (373)
T d2madh_         135 NNADLLFFQFAAGPAVGLVVQGGSSDDQLLSS---PTCYHIHPGA--PSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLT  209 (373)
T ss_pred             CCCcEEEEEEcCCCceEEeeccCCeEEEEecc---ceeEEEecCC--CcEEEEEcCCCeEEEEEcCCceeeEEEeeeccc
Confidence            56554443  4567899999888776654432   3345566653  346788889999999999988766554332   


Q ss_pred             ---CCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCc
Q 013274          190 ---RDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAP  266 (446)
Q Consensus       190 ---~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (446)
                         ......+.+.+++.  ++..+.++.+.+|+................. .        .                   
T Consensus       210 ~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~--------~-------------------  259 (373)
T d2madh_         210 AAQNLLTQPAQANKSGR--IVWPVYSGKILQADISAAGATNKAPIDALSG-G--------R-------------------  259 (373)
T ss_pred             cCccceeeeEEECCCce--EEEecCCceEEEEEcCCCeEEEEEeeccccC-c--------E-------------------
Confidence               22234455555543  4567788999999987654322111000000 0        0                   


Q ss_pred             cccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeee
Q 013274          267 QKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLV  346 (446)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~  346 (446)
                                  ....           ..+..   ......+...-....+.+++..+++...++.+.+||+.+++... 
T Consensus       260 ------------~~~~-----------~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~-  312 (373)
T d2madh_         260 ------------KADT-----------WRPGG---WQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS-  312 (373)
T ss_pred             ------------Eeee-----------eccCc---ceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEE-
Confidence                        0000           00000   00000011111222344556667788888999999999876421 


Q ss_pred             eeeEEEeecCCCeEEEEcCCCcEE-E-EeC-CCceEEEEeecCceEEEecccccceEEEEEcCC
Q 013274          347 NFETVRLQTSKPIQLATTQDPAVV-F-VPC-MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQ  407 (446)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~-~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd  407 (446)
                      .+.    ....+..+++++|+..+ + ... ...+++||+.+++.++++.+|....+.+++-++
T Consensus       313 ~~~----~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         313 QIS----LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             Eec----CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence            111    12345678999998743 3 333 357999999999999999999888888887554

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.40  E-value=3.6e-12  Score=120.31  Aligned_cols=321  Identities=10%  Similarity=0.020  Sum_probs=167.4

Q ss_pred             EEEEeeCCCcEEEEEcccCcCCCCCCccccc-----------cceEEec--cccccCccccEeEEEEeecCCcEEE-EEe
Q 013274           58 YLLSGASDSSVAVYDVQRATDYEGGGHIAKH-----------RSVFVVD--KQHEHGHKYAISSAIWYPVDTGLFV-TGS  123 (446)
Q Consensus        58 ~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~-----------~~~~~~~--~~~~~gh~~~V~~~~~~~~~~~~l~-s~s  123 (446)
                      .++||+.+|.|++|++.+++......++...           +.++...  ......|.-........| ||++|+ +..
T Consensus        13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtp-DGr~lfV~d~   91 (441)
T d1qnia2          13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRY-DGKYLFINDK   91 (441)
T ss_dssp             EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEE-EEEEEEEEET
T ss_pred             EEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccC-CCCEEEEEcC
Confidence            3788899999999999766532111110000           0000000  000112333333222233 677774 556


Q ss_pred             CCCeEEEEECCCCeeeEEEec--CCceEEeeeccCCCCceEEEEeeCCC-----------------cEEEEeCCCCceee
Q 013274          124 YDHYVKVWDTNCTRVVMNFKM--PGKVYRTAMSPLAASHMLIAAGTEDV-----------------QVRLCDIASGAISQ  184 (446)
Q Consensus       124 ~D~~i~iWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~lasgs~d~-----------------~v~vwd~~~~~~~~  184 (446)
                      .+.+|.++|++++++......  ....+.+.++++... .+++..+.+.                 .+..+|.++.+...
T Consensus        92 ~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t-~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~  170 (441)
T d1qnia2          92 ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKT-NYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAW  170 (441)
T ss_dssp             TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBC-CEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEE
T ss_pred             CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCE-EEEEeccCCcccccCcccccccccccceEEeecCccceeeE
Confidence            789999999999988776654  344677888876542 3444444332                 23568888887777


Q ss_pred             eeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCC
Q 013274          185 TLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPR  264 (446)
Q Consensus       185 ~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (446)
                      ++.-. +....+.|+|+++++++++.....+..++..+......+.......         ...  ... ........  
T Consensus       171 qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~---------~~~--~~~-dGk~~~v~--  235 (441)
T d1qnia2         171 QVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVER---------IAA--AVK-AGNFKTIG--  235 (441)
T ss_dssp             EEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHH---------HHH--HHH-TTCCBCCT--
T ss_pred             EEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccc---------eEE--Eec-CCCEEEeC--
Confidence            76643 4578899999999876655444444444443333222211100000         000  000 00000000  


Q ss_pred             CccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEE-EEeecCCcEEEEecCcCce
Q 013274          265 APQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYL-LSAGSDSRIRLWDVESGRN  343 (446)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l-~sgs~D~~i~lWd~~~~~~  343 (446)
                            .++......     .....+...           .... .....+.++|||+|+ ++|..|++|.+||+++-..
T Consensus       236 ------~~~v~vvd~-----~~~~~v~~~-----------IPvg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~  292 (441)
T d1qnia2         236 ------DSKVPVVDG-----RGESEFTRY-----------IPVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDD  292 (441)
T ss_dssp             ------TCCCCEEEC-----SSSCSSEEE-----------ECCB-SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHH
T ss_pred             ------CCCcEEEEc-----ccCCceEEE-----------EeCC-CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhh
Confidence                  000000000     000000000           0011 123568899999986 6789999999999876321


Q ss_pred             eee---e-eeEEEeec---CCCeEEEEcCCCcEEEEeC-CCceEEEEeec------C----ceEEEe-----cccccceE
Q 013274          344 TLV---N-FETVRLQT---SKPIQLATTQDPAVVFVPC-MTAVKAFDIWS------G----KTCLTF-----RGHYEYVN  400 (446)
Q Consensus       344 ~~~---~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~------~----~~~~~l-----~gH~~~v~  400 (446)
                      .+.   . ...+..+.   -.+....|.+++....+.. .+.+..|++..      +    .....+     .||...+.
T Consensus       293 ~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~  372 (441)
T d1qnia2         293 LFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASL  372 (441)
T ss_dssp             HTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETT
T ss_pred             HhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCcccc
Confidence            100   0 00001111   1233456677665555543 35788999742      1    122233     79999999


Q ss_pred             EEEEcCCCCEEEEe---eCCC
Q 013274          401 CCCFSSQDQELYTG---GNDR  418 (446)
Q Consensus       401 ~~~fSpd~~~lvtg---s~D~  418 (446)
                      +.+|+|||+||+++   |.|+
T Consensus       373 ~~t~~pdGk~l~s~~k~s~dr  393 (441)
T d1qnia2         373 TESRDADGKWLVVLSKFSKDR  393 (441)
T ss_dssp             TTSTTCCCCEEEEEESCCGGG
T ss_pred             ccccCCCCcEEEecCcccccc
Confidence            99999999999999   5553

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.33  E-value=7.6e-11  Score=114.11  Aligned_cols=153  Identities=11%  Similarity=0.144  Sum_probs=106.1

Q ss_pred             eEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeC--
Q 013274           47 NSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY--  124 (446)
Q Consensus        47 ~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~--  124 (446)
                      .++.|.+ ++.++.  ..|+.|.+||+.++..            ..++....+..|...|.+..++| |+++|+.++.  
T Consensus        20 ~~~~W~~-d~~~~~--~~~~~~~~~~~~t~~~------------~~~~~~~~~~~~~~~i~~~~~Sp-Dg~~i~~~~~~~   83 (470)
T d2bgra1          20 YSLRWIS-DHEYLY--KQENNILVFNAEYGNS------------SVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYV   83 (470)
T ss_dssp             CCCEECS-SSEEEE--ESSSCEEEEETTTCCE------------EEEECTTTTTTSSSCCCEEEECT-TSSEEEEEEEEE
T ss_pred             cCCEeCC-CCEEEE--EcCCcEEEEECCCCCE------------EEEEchhhhhhccCccceeEECC-CCCEEEEEECCc
Confidence            3577875 566664  3588999999987653            12234455667888899988887 8999888754  


Q ss_pred             -------CCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeC---------
Q 013274          125 -------DHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG---------  188 (446)
Q Consensus       125 -------D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~---------  188 (446)
                             ++.+.+||+++++.......++.+....++|++.   .+|.. .+..+++|++.++...+....         
T Consensus        84 ~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~---~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g  159 (470)
T d2bgra1          84 KQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGH---KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNG  159 (470)
T ss_dssp             ECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTT---CEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEES
T ss_pred             ceeeeccCceEEEEECCCCcccccccCCccccccccccCcc---eeeEe-ecccceEEECCCCceeeeeeccCCCccccc
Confidence                   5678899999988655444566677888998653   56664 477899999998876543322         


Q ss_pred             ---------CCCCeEEEEEecCCCeEEEEeeCC-CcEEEEEc
Q 013274          189 ---------HRDGIMTVEWSTSSEWILVTGGCD-GAIRFWDI  220 (446)
Q Consensus       189 ---------h~~~v~sv~~s~~~~~~l~S~s~D-g~I~iWd~  220 (446)
                               ..+....+.|||+++. |+....| ..++.|++
T Consensus       160 ~~d~~~~~~~~~~~~~~~wSPDGk~-ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         160 ITDWVYEEEVFSAYSALWWSPNGTF-LAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             BCCHHHHHHTSSSSBCEEECTTSSE-EEEEEEECTTCCEEEE
T ss_pred             ccceeeeeeecCCccccEECCCCCc-cceeEecCCcCceEEE
Confidence                     1233466789999997 4666554 33666654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.08  E-value=2.3e-10  Score=107.86  Aligned_cols=238  Identities=11%  Similarity=-0.015  Sum_probs=137.7

Q ss_pred             EEEEEeCCCeEEEEECCCCeeeEEEecCCc----------------------------eEEeeeccCCCCc-eEEEEeeC
Q 013274          118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGK----------------------------VYRTAMSPLAASH-MLIAAGTE  168 (446)
Q Consensus       118 ~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~-~~lasgs~  168 (446)
                      .|+|++.+|.|++|++.+++.++++..-..                            .-...+....+++ .+++....
T Consensus        13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~   92 (441)
T d1qnia2          13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKA   92 (441)
T ss_dssp             EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETT
T ss_pred             EEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCC
Confidence            367999999999999999998887653100                            0011111111233 34566678


Q ss_pred             CCcEEEEeCCCCceeeeee-CCCCCeEEEEEecCCCeEEEEeeCCCcEEE------EEccCC-ceeEEeecccccccCCC
Q 013274          169 DVQVRLCDIASGAISQTLS-GHRDGIMTVEWSTSSEWILVTGGCDGAIRF------WDIRRA-GCFRVLDQSQSQLGRRP  240 (446)
Q Consensus       169 d~~v~vwd~~~~~~~~~l~-~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~i------Wd~~~~-~~~~~~~~~~~~~~~~~  240 (446)
                      +..|.++|+++.+....+. .+......++|+|+++...+.+..+..+.+      |+.... ..+..++..        
T Consensus        93 ~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~--------  164 (441)
T d1qnia2          93 NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAE--------  164 (441)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETT--------
T ss_pred             CCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCc--------
Confidence            8899999999998877665 456788999999998854444444343432      110000 000000000        


Q ss_pred             cccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccC
Q 013274          241 PLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTED  320 (446)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~d  320 (446)
                                                                    ...+..+            ..-.+....++|+||
T Consensus       165 ----------------------------------------------t~~v~~q------------I~v~~~p~~v~~spd  186 (441)
T d1qnia2         165 ----------------------------------------------TMDVAWQ------------VIVDGNLDNTDADYT  186 (441)
T ss_dssp             ----------------------------------------------TCSEEEE------------EEESSCCCCEEECSS
T ss_pred             ----------------------------------------------cceeeEE------------EecCCCccceEECCC
Confidence                                                          0000000            001123566889999


Q ss_pred             CCEEEEeecCC-cEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEeecCceEEEecccccce
Q 013274          321 GMYLLSAGSDS-RIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYV  399 (446)
Q Consensus       321 g~~l~sgs~D~-~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~gH~~~v  399 (446)
                      |+++.+.+.+. .+..++..+.+.. ..+..    ...+....+.+++..+..+..+.+.+++..+.+.+..++.+.. .
T Consensus       187 Gk~a~vt~~nse~~~~id~~t~~~~-d~i~v----~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgks-P  260 (441)
T d1qnia2         187 GKYATSTCYNSERAVDLAGTMRNDR-DWVVV----FNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKN-P  260 (441)
T ss_dssp             SSEEEEEESCTTCCSSHHHHTCSSB-CEEEE----EEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSS-C
T ss_pred             CCEEEEEecCCCceEEEeccCcceE-EEEEe----CCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCC-c
Confidence            99988777653 3444444333211 00100    1112223455666655444434444554555567778888766 5


Q ss_pred             EEEEEcCCCCEE-EEeeCCCcEEEeCCCC
Q 013274          400 NCCCFSSQDQEL-YTGGNDRQILVWCPSR  427 (446)
Q Consensus       400 ~~~~fSpd~~~l-vtgs~D~~v~vW~~~~  427 (446)
                      ..+.+||||+++ +++..|++|.||+.++
T Consensus       261 hGv~vSPDGkyl~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         261 HGLNTSPDGKYFIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             CCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred             cCceECCCCCEEEEeCCcCCcEEEEEeeh
Confidence            889999999986 5788999999999763

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.05  E-value=8.5e-09  Score=95.91  Aligned_cols=269  Identities=7%  Similarity=-0.045  Sum_probs=150.4

Q ss_pred             eeEEEeecCCCCEEEEe----------eCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecC
Q 013274           46 INSLQVDLTEERYLLSG----------ASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (446)
Q Consensus        46 v~~l~~s~~~~~~l~s~----------s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~  115 (446)
                      ...+.|+| ++++|+.+          +.|++|++||..+++...   .       +................+.++| |
T Consensus        67 ~~~~a~sp-Dg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~---~-------i~~p~~~~~~~g~~p~~~a~Sp-D  134 (368)
T d1mdah_          67 LSLAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIA---D-------IELPDAPRFSVGPRVHIIGNCA-S  134 (368)
T ss_dssp             TCEEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE---E-------EEETTSCSCCBSCCTTSEEECT-T
T ss_pred             CCcceECC-CCCEEEEEcccCccccccccCCeEEEEECCCCcEee---e-------ecCCccceecccCCccceEECC-C
Confidence            34688987 57767664          358889999998764210   0       0000000000000111345665 8


Q ss_pred             CcEEEEEe-CCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceee------eeeC
Q 013274          116 TGLFVTGS-YDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQ------TLSG  188 (446)
Q Consensus       116 ~~~l~s~s-~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~------~l~~  188 (446)
                      +++++.+. .++++.+||+.+++.+..+..++..   ...+.  ....++..+.|+.+.++++..+....      .+..
T Consensus       135 Gk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~---~~~~~--~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~  209 (368)
T d1mdah_         135 SACLLFFLFGSSAAAGLSVPGASDDQLTKSASCF---HIHPG--AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGA  209 (368)
T ss_dssp             SSCEEEEECSSSCEEEEEETTTEEEEEEECSSCC---CCEEE--ETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTT
T ss_pred             CCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcc---eEccC--CCceEEEEcCCCCEEEEEecCCceeeeeeecccccc
Confidence            88887765 5799999999999988877665432   11221  22356677889999999987654322      2234


Q ss_pred             CCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccc
Q 013274          189 HRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQK  268 (446)
Q Consensus       189 h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (446)
                      +...+..+.+.+++. .+.+  ..+.+.++++.......... ....                                 
T Consensus       210 ~~~~~~~~~~~~~g~-~~~~--~~~~v~~~~~~~~~~~~~~~-~~~~---------------------------------  252 (368)
T d1mdah_         210 QNCSSQAAQANYPGM-LVWA--VASSILQGDIPAAGATMKAA-IDGN---------------------------------  252 (368)
T ss_dssp             SCBCSCCEEETTTTE-EEEC--BSSCCEEEECCSSCCEEECC-CCSS---------------------------------
T ss_pred             cccceeecccccCcE-EEEe--cCCCEEEEeecCCceEEEee-cccc---------------------------------
Confidence            555566777777764 3333  34667777765443211100 0000                                 


Q ss_pred             cccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeec---------CCcEEEEecC
Q 013274          269 RSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS---------DSRIRLWDVE  339 (446)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~---------D~~i~lWd~~  339 (446)
                                           .......         ....+....+++++++..+.....         ..+|.+||..
T Consensus       253 ---------------------~~~~~~~---------~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~  302 (368)
T d1mdah_         253 ---------------------ESGRKAD---------NFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS  302 (368)
T ss_dssp             ---------------------CTHHHHT---------TEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESS
T ss_pred             ---------------------cceeeee---------eecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECC
Confidence                                 0000000         000011223567788775543322         2358999999


Q ss_pred             cCceeeeeeeEEEeecCCCeEEEEcCCCc-EEEEe--CCCceEEEEeecCceEEEecccccceEEEEE
Q 013274          340 SGRNTLVNFETVRLQTSKPIQLATTQDPA-VVFVP--CMTAVKAFDIWSGKTCLTFRGHYEYVNCCCF  404 (446)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~f  404 (446)
                      +++.. ..+..    ...+..+++++|+. ++++.  ..+.+++||..+++.+.++..... .+.|++
T Consensus       303 t~~~~-~~~~~----~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~-P~~l~~  364 (368)
T d1mdah_         303 VGQTS-GPISN----GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSV  364 (368)
T ss_dssp             SCCEE-ECCEE----EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEEC
T ss_pred             CCcEe-EEecC----CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCC-CCEEEE
Confidence            87632 11211    12345688999985 44443  346899999999999998886554 344444

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.81  E-value=1.1e-06  Score=81.30  Aligned_cols=119  Identities=12%  Similarity=0.081  Sum_probs=74.3

Q ss_pred             CeEEEEEccCCCEE-EEeecCCcEEEEecCcCceeee-eeeEEEeec--------------CCCeEEEEcCCCcEEEEeC
Q 013274          311 AVTGLKVTEDGMYL-LSAGSDSRIRLWDVESGRNTLV-NFETVRLQT--------------SKPIQLATTQDPAVVFVPC  374 (446)
Q Consensus       311 ~v~~l~fs~dg~~l-~sgs~D~~i~lWd~~~~~~~~~-~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~  374 (446)
                      ..+.++|+|+|+++ ++.-.+++|.+|++..++.... .........              ..+..+.++|++..+++..
T Consensus       194 gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsn  273 (365)
T d1jofa_         194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS  273 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred             ceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEc
Confidence            36789999999976 6666789999999876542211 111111100              0123577899999888763


Q ss_pred             C--C-----ceEEEEeecC-ceEEEe-----cccccceEEEEEcC-CCCEEE-EeeCCCcEEEeCCCCCC
Q 013274          375 M--T-----AVKAFDIWSG-KTCLTF-----RGHYEYVNCCCFSS-QDQELY-TGGNDRQILVWCPSRHI  429 (446)
Q Consensus       375 ~--~-----~~~~~d~~~~-~~~~~l-----~gH~~~v~~~~fSp-d~~~lv-tgs~D~~v~vW~~~~~~  429 (446)
                      .  +     .+..|++... ......     ...-....+++|+| +|++|+ +...+++|.||..+...
T Consensus       274 r~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         274 RANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             EESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             ccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            2  2     2555666443 222111     22334567899998 789765 55778999999776543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.76  E-value=1.2e-08  Score=98.24  Aligned_cols=114  Identities=6%  Similarity=-0.047  Sum_probs=81.5

Q ss_pred             ccccCeEEEEEccCCCEEEEeec---------CCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCc
Q 013274          307 AHYGAVTGLKVTEDGMYLLSAGS---------DSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTA  377 (446)
Q Consensus       307 ~h~~~v~~l~fs~dg~~l~sgs~---------D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (446)
                      .|...|.++.|||||++|+.++.         ++.+.+||+.+++..     .+.........+.++||+..++......
T Consensus        59 ~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~-----~l~~~~~~~~~~~~SPDG~~ia~~~~~~  133 (470)
T d2bgra1          59 EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-----TEERIPNNTQWVTWSPVGHKLAYVWNND  133 (470)
T ss_dssp             TSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-----CSSCCCTTEEEEEECSSTTCEEEEETTE
T ss_pred             hccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCccc-----ccccCCccccccccccCcceeeEeeccc
Confidence            34556889999999999998754         567889999987532     1122234456788999999988887788


Q ss_pred             eEEEEeecCceEEEecc------------------cccceEEEEEcCCCCEEEEeeCCCc-EEEeCC
Q 013274          378 VKAFDIWSGKTCLTFRG------------------HYEYVNCCCFSSQDQELYTGGNDRQ-ILVWCP  425 (446)
Q Consensus       378 ~~~~d~~~~~~~~~l~g------------------H~~~v~~~~fSpd~~~lvtgs~D~~-v~vW~~  425 (446)
                      +.+|+..+++.......                  +.+....+.|||||++|+..+.|.+ |+.|..
T Consensus       134 l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         134 IYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             EEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred             ceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEE
Confidence            88888887765543221                  2233466889999999999887755 555543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.66  E-value=9.3e-06  Score=72.66  Aligned_cols=152  Identities=9%  Similarity=0.014  Sum_probs=94.3

Q ss_pred             ceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeC
Q 013274           45 SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY  124 (446)
Q Consensus        45 ~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~  124 (446)
                      .+..+++++ +|++++|...+++|..||......            .+       ......+.++++.+ ++.++++...
T Consensus        29 ~~e~iAv~p-dG~l~vt~~~~~~I~~i~p~g~~~------------~~-------~~~~~~~~gla~~~-dG~l~v~~~~   87 (302)
T d2p4oa1          29 FLENLASAP-DGTIFVTNHEVGEIVSITPDGNQQ------------IH-------ATVEGKVSGLAFTS-NGDLVATGWN   87 (302)
T ss_dssp             CEEEEEECT-TSCEEEEETTTTEEEEECTTCCEE------------EE-------EECSSEEEEEEECT-TSCEEEEEEC
T ss_pred             CcCCEEECC-CCCEEEEeCCCCEEEEEeCCCCEE------------EE-------EcCCCCcceEEEcC-CCCeEEEecC
Confidence            477899987 688999999999998887542210            00       12234566777765 7888888888


Q ss_pred             CCeEEEEECCCCe--eeEEEec--CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeee----------CCC
Q 013274          125 DHYVKVWDTNCTR--VVMNFKM--PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS----------GHR  190 (446)
Q Consensus       125 D~~i~iWd~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~----------~h~  190 (446)
                      ++.+..|+.....  .......  ....+.+.+.+   +..++++-+.++.+..+|..++.....+.          ...
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~---~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (302)
T d2p4oa1          88 ADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS---DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF  164 (302)
T ss_dssp             TTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS---SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS
T ss_pred             CceEEEEEecccccceeeccccCCccccceeEEcc---CCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcc
Confidence            8888888765332  2221121  22344555544   34567777778888888888775322111          111


Q ss_pred             CCeEEEEEecCCCeEEEEeeCCCcEEEEEccC
Q 013274          191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIRR  222 (446)
Q Consensus       191 ~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~  222 (446)
                      .....+.++  +..++++.+..+.|..+++..
T Consensus       165 ~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~  194 (302)
T d2p4oa1         165 PAANGLKRF--GNFLYVSNTEKMLLLRIPVDS  194 (302)
T ss_dssp             CSEEEEEEE--TTEEEEEETTTTEEEEEEBCT
T ss_pred             ccccccccc--CCceeeecCCCCeEEeccccc
Confidence            234455554  445667777788888777653

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.61  E-value=1.8e-05  Score=69.88  Aligned_cols=241  Identities=12%  Similarity=0.180  Sum_probs=143.8

Q ss_pred             EeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCc-------eEEeeeccCCCCceEEEEeeCCCcEEEEeCC
Q 013274          106 ISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGK-------VYRTAMSPLAASHMLIAAGTEDVQVRLCDIA  178 (446)
Q Consensus       106 V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~  178 (446)
                      ...+++.+ ++.++++-...+.|++||.+ ++.++.+...+.       ...+++... .+..+++..+.++.|.+++..
T Consensus        25 P~gvavd~-dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~  101 (279)
T d1q7fa_          25 PSGVAVNA-QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRN-SGDIIVTERSPTHQIQIYNQY  101 (279)
T ss_dssp             EEEEEECT-TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETT-TTEEEEEECGGGCEEEEECTT
T ss_pred             ccEEEEcC-CCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCccccccccccccccc-ccccceeccCCcccccccccc
Confidence            34556655 77788777778999999975 666665542211       122232221 122344444556677777764


Q ss_pred             CCceeeeee-CCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCC
Q 013274          179 SGAISQTLS-GHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQ  257 (446)
Q Consensus       179 ~~~~~~~l~-~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (446)
                       +.....+. ........+++.+++. ++++....+.+.+++.. ++.+..+.                           
T Consensus       102 -g~~~~~~~~~~~~~p~~~avd~~G~-i~v~~~~~~~~~~~~~~-g~~~~~~g---------------------------  151 (279)
T d1q7fa_         102 -GQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFG---------------------------  151 (279)
T ss_dssp             -SCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEE---------------------------
T ss_pred             -ccceeecCCCcccccceeccccCCc-EEEEeeccceeeEeccC-Cceeeccc---------------------------
Confidence             44444443 3445567788877776 34554545556666532 11111110                           


Q ss_pred             CCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeecCCcEEEEe
Q 013274          258 NSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWD  337 (446)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd  337 (446)
                                                                     ...+......+++.++|..+++....+.|++||
T Consensus       152 -----------------------------------------------~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d  184 (279)
T d1q7fa_         152 -----------------------------------------------CSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFN  184 (279)
T ss_dssp             -----------------------------------------------CTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEE
T ss_pred             -----------------------------------------------ccccccccceeeeccceeEEeeeccccceeeee
Confidence                                                           011233467788999999888889999999999


Q ss_pred             cCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCC--ceEEEEeecCceEEEeccc--ccceEEEEEcCCCCEEEE
Q 013274          338 VESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMT--AVKAFDIWSGKTCLTFRGH--YEYVNCCCFSSQDQELYT  413 (446)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~l~gH--~~~v~~~~fSpd~~~lvt  413 (446)
                      .... . +..+.. ......+..+++.+++.++++....  .+.+++ .+|+.+.++...  ....+.|++.|||+++|+
T Consensus       185 ~~G~-~-~~~~g~-~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~  260 (279)
T d1q7fa_         185 YEGQ-Y-LRQIGG-EGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVLA  260 (279)
T ss_dssp             TTCC-E-EEEESC-TTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEEEE
T ss_pred             cCCc-e-eeeecc-cccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcEEEE
Confidence            7542 1 111110 0012345667888888876665432  466665 467777776543  346789999999986665


Q ss_pred             eeCCCcEEEeCCCCCCCC
Q 013274          414 GGNDRQILVWCPSRHISD  431 (446)
Q Consensus       414 gs~D~~v~vW~~~~~~~~  431 (446)
                       +.++.|++|.-..-++.
T Consensus       261 -~~n~~v~~fr~~~~~~~  277 (279)
T d1q7fa_         261 -SKDYRLYIYRYVQLAPV  277 (279)
T ss_dssp             -ETTTEEEEEECSCCCCT
T ss_pred             -eCCCeEEEEEeeeecCC
Confidence             57899999977655443

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.46  E-value=3e-05  Score=67.51  Aligned_cols=153  Identities=13%  Similarity=0.032  Sum_probs=82.8

Q ss_pred             eEEEeecCCCCEEE-EeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCC
Q 013274           47 NSLQVDLTEERYLL-SGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYD  125 (446)
Q Consensus        47 ~~l~~s~~~~~~l~-s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D  125 (446)
                      ..|++++ +|++.+ ..+..+.|..++.......             ...   ..+. .....+++.+ ++.++++....
T Consensus        17 ~~vavd~-dG~i~v~~~~~~~~i~~~~~~~~~~~-------------~~~---~~~~-~~p~gvav~~-~g~i~v~d~~~   77 (260)
T d1rwia_          17 SGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTT-------------VLP---FNGL-YQPQGLAVDG-AGTVYVTDFNN   77 (260)
T ss_dssp             EEEEECT-TCCEEEEECSSSCEEEEEC----CEE-------------ECC---CCSC-CSCCCEEECT-TCCEEEEETTT
T ss_pred             CEEEEcC-CCCEEEEEcCCCCEEEEEcCCCceEE-------------Eec---cCCc-cCceEEEEcC-CCCEEEeeeee
Confidence            5889986 566444 4566677777765432110             000   0011 1122344544 67777777777


Q ss_pred             CeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeE
Q 013274          126 HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWI  205 (446)
Q Consensus       126 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~  205 (446)
                      +.+++++......+.....-.....+++.+.   ..++++-..+..+..++............-......++++++++ +
T Consensus        78 ~~i~~~~~~~~~~~~~~~~~~~p~~iavd~~---g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-~  153 (260)
T d1rwia_          78 RVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQ---GAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-V  153 (260)
T ss_dssp             EEEEECTTCSCCEECCCCSCCSEEEEEECTT---CCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCC-E
T ss_pred             ceeeeeeeccceeeeeeeeeeeccccccccc---ceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCC-E
Confidence            7777776554444333222233455665543   23555555566677776655433222222233457889998876 5


Q ss_pred             EEEeeCCCcEEEEEccC
Q 013274          206 LVTGGCDGAIRFWDIRR  222 (446)
Q Consensus       206 l~S~s~Dg~I~iWd~~~  222 (446)
                      +++...++.|..+|...
T Consensus       154 ~v~~~~~~~i~~~d~~~  170 (260)
T d1rwia_         154 YVTDTDNNRVVKLEAES  170 (260)
T ss_dssp             EEEEGGGTEEEEECTTT
T ss_pred             eeecccccccccccccc
Confidence            67777778888888653

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.41  E-value=4e-05  Score=68.32  Aligned_cols=202  Identities=11%  Similarity=0.066  Sum_probs=121.9

Q ss_pred             ceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEccCCce-
Q 013274          147 KVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGC-  225 (446)
Q Consensus       147 ~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~~~~-  225 (446)
                      .+..+++.++   ..++++...++.|..||....  ...+......+.+++|+++++ ++++...++.+..|+...... 
T Consensus        29 ~~e~iAv~pd---G~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~-l~v~~~~~~~~~~~~~~~~~~~  102 (302)
T d2p4oa1          29 FLENLASAPD---GTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGT  102 (302)
T ss_dssp             CEEEEEECTT---SCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECTTSC
T ss_pred             CcCCEEECCC---CCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCC-eEEEecCCceEEEEEecccccc
Confidence            3456677764   347888888898988886543  334555667899999999987 567777778888887543210 


Q ss_pred             eEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccceeecCCccccccCCCcccccccc
Q 013274          226 FRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRA  305 (446)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (446)
                      ...+                                                       .                   .
T Consensus       103 ~~~~-------------------------------------------------------~-------------------~  108 (302)
T d2p4oa1         103 VETL-------------------------------------------------------L-------------------T  108 (302)
T ss_dssp             EEEE-------------------------------------------------------E-------------------E
T ss_pred             eeec-------------------------------------------------------c-------------------c
Confidence            0000                                                       0                   0


Q ss_pred             cccccCeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEee----cCCCeEEEEcCCCcEEEEeCC--CceE
Q 013274          306 TAHYGAVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQ----TSKPIQLATTQDPAVVFVPCM--TAVK  379 (446)
Q Consensus       306 ~~h~~~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~  379 (446)
                      .......+.+++.++|+++++.+.++.+..+|...+.............    ...........++..++....  ..+.
T Consensus       109 ~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~  188 (302)
T d2p4oa1         109 LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLL  188 (302)
T ss_dssp             CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEE
T ss_pred             cCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCeEE
Confidence            0112346788999999999998889999888887754322111000000    000111112223344444433  3444


Q ss_pred             EEEeecCceE--EEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCC
Q 013274          380 AFDIWSGKTC--LTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRH  428 (446)
Q Consensus       380 ~~d~~~~~~~--~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~  428 (446)
                      .+++......  .....+......++|.+||++.++...++.|..+++++.
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~  239 (302)
T d2p4oa1         189 RIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS  239 (302)
T ss_dssp             EEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC
T ss_pred             eccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCC
Confidence            4554332211  122223445678999999999999888999999999865

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.41  E-value=7.2e-05  Score=64.91  Aligned_cols=160  Identities=10%  Similarity=0.037  Sum_probs=82.8

Q ss_pred             eCCCccceeEEEeecCCCCEEEEeeC-CCc--EEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecC
Q 013274           39 VSPHKGSINSLQVDLTEERYLLSGAS-DSS--VAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVD  115 (446)
Q Consensus        39 ~~~H~~~v~~l~~s~~~~~~l~s~s~-Dg~--i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~  115 (446)
                      +..+.+.+.+-+||| ||+.||-.+. ++.  +.+.+...+...                  ....+........++| +
T Consensus        34 l~~~~~~~~sP~wSP-DGk~IAf~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~sp-d   93 (269)
T d2hqsa1          34 VHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVR------------------QVASFPRHNGAPAFSP-D   93 (269)
T ss_dssp             EEEESSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEE------------------EEECCSSCEEEEEECT-T
T ss_pred             EecCCCceeeeEECC-CCCEEEEEEeeccCcceeeeecccCcee------------------EEeeeecccccceecC-C
Confidence            445567788999997 5777775544 333  444444332110                  0113444555666776 6


Q ss_pred             CcEEEEEeC-CCeEEEEEC--CCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCC--cEEEEeCCCCceeeeeeCCC
Q 013274          116 TGLFVTGSY-DHYVKVWDT--NCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDV--QVRLCDIASGAISQTLSGHR  190 (446)
Q Consensus       116 ~~~l~s~s~-D~~i~iWd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~--~v~vwd~~~~~~~~~l~~h~  190 (446)
                      ++.++..+. ++...++..  ...................+...  ....+.+...++  .|.+.++..+.. ..+..+.
T Consensus        94 g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~  170 (269)
T d2hqsa1          94 GSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPD--SQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEG  170 (269)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTT--SSEEEEEECTTSSCEEEEEETTSSCC-EECCCSS
T ss_pred             CCeeeEeeecCCccceeecccccccceeeeeccccccccccccc--cccceecccccCCceEeeeecccccc-eeeeccc
Confidence            666665443 333333332  22222221111222222233332  233445554454  456666666543 2334456


Q ss_pred             CCeEEEEEecCCCeEEEEeeCCCcEEEEEcc
Q 013274          191 DGIMTVEWSTSSEWILVTGGCDGAIRFWDIR  221 (446)
Q Consensus       191 ~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~  221 (446)
                      .......|+|++++++......+...+|...
T Consensus       171 ~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~  201 (269)
T d2hqsa1         171 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQD  201 (269)
T ss_dssp             SEEEEEEECTTSSEEEEEEECSSCEEEEEEE
T ss_pred             ccccccccccccceeEEEeecCCceeeeEee
Confidence            6777889999999876666666666666543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.24  E-value=0.0014  Score=58.24  Aligned_cols=114  Identities=11%  Similarity=0.158  Sum_probs=74.9

Q ss_pred             eEEEEEccCCC-----EEEEeecCCcEEEEecCcCceeeeeeeE-EEee---cCCCeEEEEcCCCcEEEEe-CCCceEEE
Q 013274          312 VTGLKVTEDGM-----YLLSAGSDSRIRLWDVESGRNTLVNFET-VRLQ---TSKPIQLATTQDPAVVFVP-CMTAVKAF  381 (446)
Q Consensus       312 v~~l~fs~dg~-----~l~sgs~D~~i~lWd~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~  381 (446)
                      -+.++|+|++.     ++++-+..++|..||+..... ...... ..+.   ...+.-+++..++.+.+.. ..+.+..|
T Consensus       174 pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~-~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~  252 (314)
T d1pjxa_         174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAK-IENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVF  252 (314)
T ss_dssp             EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTE-EEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred             eeeeEECCCCCcceeEEEEEeecccceEEeeccCccc-cceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEE
Confidence            46788998764     556677888899988764321 111111 1111   1123346777777765443 45678888


Q ss_pred             EeecCceEEEecccccceEEEEEcCCCC-EEEEeeCCCcEEEeCCC
Q 013274          382 DIWSGKTCLTFRGHYEYVNCCCFSSQDQ-ELYTGGNDRQILVWCPS  426 (446)
Q Consensus       382 d~~~~~~~~~l~gH~~~v~~~~fSpd~~-~lvtgs~D~~v~vW~~~  426 (446)
                      +-..++....+......+++|+|.||++ +++|.+..+.|...++.
T Consensus       253 dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         253 GPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             CTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             eCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            8777777777777777899999999997 55777777877776654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.22  E-value=0.00091  Score=57.55  Aligned_cols=226  Identities=10%  Similarity=0.051  Sum_probs=120.1

Q ss_pred             eEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeC-C--CcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCC
Q 013274          127 YVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTE-D--VQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSE  203 (446)
Q Consensus       127 ~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~-d--~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~  203 (446)
                      .|.|-|.+.............+..-+++|++.   .||.... +  ..+.+.+..++.. ..+..+.+......|+|+++
T Consensus        20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk---~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~   95 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGS---KLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGS   95 (269)
T ss_dssp             EEEEEETTSCSCEEEEEESSCEEEEEECTTSS---EEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSS
T ss_pred             EEEEEcCCCCCcEEEecCCCceeeeEECCCCC---EEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCC
Confidence            46666766555444445566677778888653   4554432 2  2466667666554 34555778888999999999


Q ss_pred             eEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecccce
Q 013274          204 WILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSSVGR  283 (446)
Q Consensus       204 ~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (446)
                      .++.....++...++..........                                                       
T Consensus        96 ~i~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------------  120 (269)
T d2hqsa1          96 KLAFALSKTGSLNLYVMDLASGQIR-------------------------------------------------------  120 (269)
T ss_dssp             EEEEEECTTSSCEEEEEETTTCCEE-------------------------------------------------------
T ss_pred             eeeEeeecCCccceeecccccccce-------------------------------------------------------
Confidence            7655444444433332211000000                                                       


Q ss_pred             eecCCccccccCCCcccccccccccccCeEEEEEccCCCE-EEEeecCCcEEEE--ecCcCceeeeeeeEEEeecCCCeE
Q 013274          284 IPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMY-LLSAGSDSRIRLW--DVESGRNTLVNFETVRLQTSKPIQ  360 (446)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~-l~sgs~D~~i~lW--d~~~~~~~~~~~~~~~~~~~~~~~  360 (446)
                                          ....+........+++++.. +++...++...+|  ++..+.....     .........
T Consensus       121 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~-----~~~~~~~~~  175 (269)
T d2hqsa1         121 --------------------QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRI-----TWEGSQNQD  175 (269)
T ss_dssp             --------------------ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEEC-----CCSSSEEEE
T ss_pred             --------------------eeeeccccccccccccccccceecccccCCceEeeeecccccceee-----ecccccccc
Confidence                                00001111233345566553 3444445544444  5444322111     111122234


Q ss_pred             EEEcCCCcEEEEeC--CCceEEEEeecCceEEEecccccceEEEEEcCCCCEEEEeeC---CCcEEEeCCCCCCCCCcCC
Q 013274          361 LATTQDPAVVFVPC--MTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGN---DRQILVWCPSRHISDGVDA  435 (446)
Q Consensus       361 ~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fSpd~~~lvtgs~---D~~v~vW~~~~~~~~~~~~  435 (446)
                      ...++++..++...  .....+|..........+..+........|||||++|+-.+.   ...|.++++++.....+-.
T Consensus       176 ~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~  255 (269)
T d2hqsa1         176 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPA  255 (269)
T ss_dssp             EEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCC
T ss_pred             cccccccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeC
Confidence            56777877665542  233445544444333445556667788899999999884333   3567888988776544433


Q ss_pred             C
Q 013274          436 G  436 (446)
Q Consensus       436 ~  436 (446)
                      .
T Consensus       256 ~  256 (269)
T d2hqsa1         256 T  256 (269)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.11  E-value=0.0031  Score=57.20  Aligned_cols=77  Identities=10%  Similarity=0.070  Sum_probs=52.5

Q ss_pred             CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC-cee--eee--eCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEEc
Q 013274          146 GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AIS--QTL--SGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDI  220 (446)
Q Consensus       146 ~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~-~~~--~~l--~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~  220 (446)
                      .+++.+.++|+..  .++++......|.+|+.... ...  ..+  .........++|+|+++++.++.-.+++|.+||+
T Consensus       145 ~h~h~v~~sPdG~--~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~  222 (365)
T d1jofa_         145 TGIHGMVFDPTET--YLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVI  222 (365)
T ss_dssp             CCEEEEEECTTSS--EEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CcceEEEECCCCC--EEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEe
Confidence            3567888888542  34444444567888876543 221  122  2345677899999999987778888999999998


Q ss_pred             cCCc
Q 013274          221 RRAG  224 (446)
Q Consensus       221 ~~~~  224 (446)
                      ...+
T Consensus       223 ~~~~  226 (365)
T d1jofa_         223 DPAT  226 (365)
T ss_dssp             CTTT
T ss_pred             cCCC
Confidence            6543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.00  E-value=0.0024  Score=56.81  Aligned_cols=155  Identities=11%  Similarity=-0.030  Sum_probs=83.5

Q ss_pred             ceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeC
Q 013274           45 SINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSY  124 (446)
Q Consensus        45 ~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~  124 (446)
                      ....+.|++ ++++.++-...+.|..||.++....           ....      ........+.+.+ ++.++++...
T Consensus        41 ~lEG~~~D~-~G~Ly~~D~~~g~I~ri~p~g~~~~-----------~~~~------~~~~~p~gla~~~-dG~l~va~~~  101 (319)
T d2dg1a1          41 QLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIK-----------RPFV------SHKANPAAIKIHK-DGRLFVCYLG  101 (319)
T ss_dssp             CEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEE-----------EEEE------CSSSSEEEEEECT-TSCEEEEECT
T ss_pred             CcEeCEECC-CCCEEEEECCCCEEEEEECCCCeEE-----------EEEe------CCCCCeeEEEECC-CCCEEEEecC
Confidence            446889986 5778888788899988887653210           0000      1122344555654 7777665433


Q ss_pred             C----CeEEEEECCCCeeeEEEecC---CceEEeeeccCCCCceEEEEeeC------CCcEEEEeCCCCceeeeeeCCCC
Q 013274          125 D----HYVKVWDTNCTRVVMNFKMP---GKVYRTAMSPLAASHMLIAAGTE------DVQVRLCDIASGAISQTLSGHRD  191 (446)
Q Consensus       125 D----~~i~iWd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~lasgs~------d~~v~vwd~~~~~~~~~l~~h~~  191 (446)
                      +    +.+...+.............   ...+.+.+.+.+   .+.++...      .+.+..++.+.+. +..+...-.
T Consensus       102 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G---~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~  177 (319)
T d2dg1a1         102 DFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG---GFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNIS  177 (319)
T ss_dssp             TSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS---CEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEES
T ss_pred             CCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEecc---ceeecccccccccCcceeEEEecccce-eEEEeeccc
Confidence            2    23444444444333322211   113344444432   23333221      1235555544433 222222233


Q ss_pred             CeEEEEEecCCCeEEEEeeCCCcEEEEEccC
Q 013274          192 GIMTVEWSTSSEWILVTGGCDGAIRFWDIRR  222 (446)
Q Consensus       192 ~v~sv~~s~~~~~~l~S~s~Dg~I~iWd~~~  222 (446)
                      ....++|+|+++.++++-+..+.|..||+..
T Consensus       178 ~pnGia~s~dg~~lyvad~~~~~I~~~d~~~  208 (319)
T d2dg1a1         178 VANGIALSTDEKVLWVTETTANRLHRIALED  208 (319)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             eeeeeeeccccceEEEecccCCceEEEEEcC
Confidence            4577999999987777777889999998764

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.97  E-value=0.0043  Score=53.85  Aligned_cols=242  Identities=11%  Similarity=0.187  Sum_probs=135.6

Q ss_pred             eeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEE-EeC
Q 013274           46 INSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT-GSY  124 (446)
Q Consensus        46 v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s-~s~  124 (446)
                      =..|++++ +++++|+-.....|++||.+. ...      ..     ........+.......+.+.+..+..+++ .+.
T Consensus        25 P~gvavd~-dg~i~VaD~~n~rI~v~d~~G-~~~------~~-----~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~   91 (279)
T d1q7fa_          25 PSGVAVNA-QNDIIVADTNNHRIQIFDKEG-RFK------FQ-----FGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP   91 (279)
T ss_dssp             EEEEEECT-TCCEEEEEGGGTEEEEECTTS-CEE------EE-----ECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG
T ss_pred             ccEEEEcC-CCCEEEEECCCCEEEEEeCCC-CEE------EE-----ecccCCCcccccccccccccccccccceeccCC
Confidence            36899986 678888877788999998652 110      00     00000001112222233444333444443 344


Q ss_pred             CCeEEEEECCCCeeeEEEecC--CceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeee--eCCCCCeEEEEEec
Q 013274          125 DHYVKVWDTNCTRVVMNFKMP--GKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTL--SGHRDGIMTVEWST  200 (446)
Q Consensus       125 D~~i~iWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l--~~h~~~v~sv~~s~  200 (446)
                      ++.|.+++.. +.....+...  .....+++.+   +..++++....+.+.++|.+ ++.+..+  ..+......+++.+
T Consensus        92 ~~~i~~~~~~-g~~~~~~~~~~~~~p~~~avd~---~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~  166 (279)
T d1q7fa_          92 THQIQIYNQY-GQFVRKFGATILQHPRGVTVDN---KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVND  166 (279)
T ss_dssp             GCEEEEECTT-SCEEEEECTTTCSCEEEEEECT---TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECS
T ss_pred             cccccccccc-ccceeecCCCcccccceecccc---CCcEEEEeeccceeeEeccC-Cceeecccccccccccceeeecc
Confidence            5677777764 5555555322  2233444443   23455555666777887754 4445544  34566778888888


Q ss_pred             CCCeEEEEeeCCCcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCcCCCCccccccCCCceeecc
Q 013274          201 SSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSVKPRAPQKRSANGNGVRQSS  280 (446)
Q Consensus       201 ~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (446)
                      ++. ++++....+.|++||... +.+..+..                                                 
T Consensus       167 ~g~-i~v~d~~~~~V~~~d~~G-~~~~~~g~-------------------------------------------------  195 (279)
T d1q7fa_         167 KQE-IFISDNRAHCVKVFNYEG-QYLRQIGG-------------------------------------------------  195 (279)
T ss_dssp             SSE-EEEEEGGGTEEEEEETTC-CEEEEESC-------------------------------------------------
T ss_pred             cee-EEeeeccccceeeeecCC-ceeeeecc-------------------------------------------------
Confidence            775 677777788999998643 22211100                                                 


Q ss_pred             cceeecCCccccccCCCcccccccccccccCeEEEEEccCCCEEEEeec-CCcEEEEecCcCceeeeeeeEEEeecCCCe
Q 013274          281 VGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMYLLSAGS-DSRIRLWDVESGRNTLVNFETVRLQTSKPI  359 (446)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~sgs~-D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~  359 (446)
                                               .++......|++.++|..+++-+. +++|.+|+.. ++.. ..+.. ......+.
T Consensus       196 -------------------------~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G~~~-~~~~~-~~~~~~p~  247 (279)
T d1q7fa_         196 -------------------------EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLI-SALES-KVKHAQCF  247 (279)
T ss_dssp             -------------------------TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEE-EEEEE-SSCCSCEE
T ss_pred             -------------------------cccccCCcccccccCCeEEEEECCCCcEEEEECCC-CCEE-EEEeC-CCCCCCEe
Confidence                                     011223567899999998877543 5579999854 4321 11111 11223466


Q ss_pred             EEEEcCCCcEEEEeCCCceEEEEee
Q 013274          360 QLATTQDPAVVFVPCMTAVKAFDIW  384 (446)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~d~~  384 (446)
                      .++..+++.+++......+++|..-
T Consensus       248 ~vav~~dG~l~V~~~n~~v~~fr~~  272 (279)
T d1q7fa_         248 DVALMDDGSVVLASKDYRLYIYRYV  272 (279)
T ss_dssp             EEEEETTTEEEEEETTTEEEEEECS
T ss_pred             EEEEeCCCcEEEEeCCCeEEEEEee
Confidence            7888888876665555567777653

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.92  E-value=0.00058  Score=59.01  Aligned_cols=117  Identities=15%  Similarity=0.093  Sum_probs=77.1

Q ss_pred             CeEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCC-CceEEEEeecCceE
Q 013274          311 AVTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCM-TAVKAFDIWSGKTC  389 (446)
Q Consensus       311 ~v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~  389 (446)
                      ...+|++.++|+++++-..+..+..++...........    .....+..+++.+++.++++... ..+..++.......
T Consensus        99 ~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~----~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~  174 (260)
T d1rwia_          99 YPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF----TGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV  174 (260)
T ss_dssp             SEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCC----CSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEE
T ss_pred             ecccccccccceeEeeccccccccccccccceeeeeee----cccCCcceeeecCCCCEeeeccccccccccccccceee
Confidence            35788999999988887777778777765532211110    11234556777787776554433 34555655433333


Q ss_pred             EEecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCCCC
Q 013274          390 LTFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISD  431 (446)
Q Consensus       390 ~~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~~~  431 (446)
                      ............|++.++|+++++....+.|..++++.....
T Consensus       175 ~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~  216 (260)
T d1rwia_         175 VLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST  216 (260)
T ss_dssp             ECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCE
T ss_pred             eeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEE
Confidence            333356677899999999999999988999999988766443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.75  E-value=0.003  Score=54.30  Aligned_cols=55  Identities=11%  Similarity=0.096  Sum_probs=38.7

Q ss_pred             CCcEEEEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEeeCCC-----cEEEEEccCCc
Q 013274          169 DVQVRLCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTGGCDG-----AIRFWDIRRAG  224 (446)
Q Consensus       169 d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg-----~I~iWd~~~~~  224 (446)
                      ++.|.+.|+.+++. +.|..+.+.+....|||||++++.+...++     .|.+.++.++.
T Consensus        20 ~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~   79 (281)
T d1k32a2          20 CDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE   79 (281)
T ss_dssp             TTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred             CCcEEEEECCCCCE-EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCc
Confidence            46789999988875 467777788899999999998655544333     35555655443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.73  E-value=0.013  Score=51.80  Aligned_cols=68  Identities=19%  Similarity=0.348  Sum_probs=45.7

Q ss_pred             eEEEEEccCCCEEEEeecCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEEe
Q 013274          312 VTGLKVTEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFDI  383 (446)
Q Consensus       312 v~~l~fs~dg~~l~sgs~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  383 (446)
                      .-.|++.++|+..++....+.|.+||.+.++...    ........+..+++.++...+++.....-++|.+
T Consensus       228 pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~----~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~  295 (314)
T d1pjxa_         228 ADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKM----RIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKF  295 (314)
T ss_dssp             EEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSE----EEECSSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             ceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEE----EEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEE
Confidence            4568999999988888888999999988764211    1122223456788888887777654444444444

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.62  E-value=0.019  Score=50.67  Aligned_cols=116  Identities=14%  Similarity=0.145  Sum_probs=70.0

Q ss_pred             eEEEEEccCCCEEEEeecC------CcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeC--CCceEEEEe
Q 013274          312 VTGLKVTEDGMYLLSAGSD------SRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPC--MTAVKAFDI  383 (446)
Q Consensus       312 v~~l~fs~dg~~l~sgs~D------~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~  383 (446)
                      .+.+++.++|.+.++....      +.+..++...+...     .+......+.-+++++++..++++.  ...+..+++
T Consensus       132 ~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~-----~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~  206 (319)
T d2dg1a1         132 IDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-----PIIQNISVANGIALSTDEKVLWVTETTANRLHRIAL  206 (319)
T ss_dssp             EEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE-----EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             CcceeEEeccceeecccccccccCcceeEEEecccceeE-----EEeeccceeeeeeeccccceEEEecccCCceEEEEE
Confidence            5678889999877764322      22444444332211     1111123345578899888766653  346777777


Q ss_pred             ec-CceEE-------EecccccceEEEEEcCCCCEEEEeeCCCcEEEeCCCCCCCCC
Q 013274          384 WS-GKTCL-------TFRGHYEYVNCCCFSSQDQELYTGGNDRQILVWCPSRHISDG  432 (446)
Q Consensus       384 ~~-~~~~~-------~l~gH~~~v~~~~fSpd~~~lvtgs~D~~v~vW~~~~~~~~~  432 (446)
                      .. +....       ...........|++.++|++.++....+.|.+++++...+..
T Consensus       207 ~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G~~l~~  263 (319)
T d2dg1a1         207 EDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQ  263 (319)
T ss_dssp             CTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEE
T ss_pred             cCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCCcEEEE
Confidence            53 22211       111112335789999999999998889999999998654443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.51  E-value=0.025  Score=49.28  Aligned_cols=221  Identities=11%  Similarity=0.065  Sum_probs=123.7

Q ss_pred             EEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeee--
Q 013274          110 IWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS--  187 (446)
Q Consensus       110 ~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~--  187 (446)
                      .|.+.++.++.+=-..++|..||.++++.. .+..+..+..+++...   ..++++ +.+ -+.++|.++++......  
T Consensus        24 ~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~~~~~~~i~~~~d---g~l~va-~~~-gl~~~d~~tg~~~~l~~~~   97 (295)
T d2ghsa1          24 TFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKISD---SKQLIA-SDD-GLFLRDTATGVLTLHAELE   97 (295)
T ss_dssp             EEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEET---TEEEEE-ETT-EEEEEETTTCCEEEEECSS
T ss_pred             eEECCCCEEEEEECCCCEEEEEECCCCeEE-EEECCCCcEEEEEecC---CCEEEE-EeC-ccEEeecccceeeEEeeee
Confidence            455545555555556688999999887653 4566666666665543   234443 444 58899999887543221  


Q ss_pred             CC--CCCeEEEEEecCCCeEEEEeeCC----CcEEEEEccCCceeEEeecccccccCCCcccccceeeccccccCCCCCc
Q 013274          188 GH--RDGIMTVEWSTSSEWILVTGGCD----GAIRFWDIRRAGCFRVLDQSQSQLGRRPPLLKRKVSISKSLSAGQNSSV  261 (446)
Q Consensus       188 ~h--~~~v~sv~~s~~~~~~l~S~s~D----g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (446)
                      ..  ...+..+.+.|++.. .++...+    +.-.+|.+..++....                                 
T Consensus        98 ~~~~~~~~nd~~vd~~G~i-w~~~~~~~~~~~~g~l~~~~~g~~~~~---------------------------------  143 (295)
T d2ghsa1          98 SDLPGNRSNDGRMHPSGAL-WIGTMGRKAETGAGSIYHVAKGKVTKL---------------------------------  143 (295)
T ss_dssp             TTCTTEEEEEEEECTTSCE-EEEEEETTCCTTCEEEEEEETTEEEEE---------------------------------
T ss_pred             cCCCcccceeeEECCCCCE-EEEeccccccccceeEeeecCCcEEEE---------------------------------
Confidence            11  124567778888763 3332211    1223333222211000                                 


Q ss_pred             CCCCccccccCCCceeecccceeecCCccccccCCCcccccccccccccCeEEEEEccCCCE-EEEeecCCcEEEEecCc
Q 013274          262 KPRAPQKRSANGNGVRQSSVGRIPAKGSVRQRLHPGMLSSQDRATAHYGAVTGLKVTEDGMY-LLSAGSDSRIRLWDVES  340 (446)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~fs~dg~~-l~sgs~D~~i~lWd~~~  340 (446)
                                                                  ......-+.++|+++++. +++-+..+.|..+++..
T Consensus       144 --------------------------------------------~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~  179 (295)
T d2ghsa1         144 --------------------------------------------FADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDA  179 (295)
T ss_dssp             --------------------------------------------EEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCT
T ss_pred             --------------------------------------------eeccCCcceeeecCCCceEEEeecccceeeEeeecc
Confidence                                                        001122467889999985 46667788898888753


Q ss_pred             Cceeee--eeeEEEe--ecCCCeEEEEcCCCcEEEEe-CCCceEEEEeecCceEEEecccccceEEEEEc-CCCCEEE-E
Q 013274          341 GRNTLV--NFETVRL--QTSKPIQLATTQDPAVVFVP-CMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFS-SQDQELY-T  413 (446)
Q Consensus       341 ~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~l~gH~~~v~~~~fS-pd~~~lv-t  413 (446)
                      ......  .......  ....+.-++...++.+.+.. ....+..+| -+++.+..+.--...+++++|- ||.+.|+ |
T Consensus       180 ~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvT  258 (295)
T d2ghsa1         180 RTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYEVPGKQTTCPAFIGPDASRLLVT  258 (295)
T ss_dssp             TTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred             cccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec-CCCcEeeEecCCCCceEEEEEeCCCCCEEEEE
Confidence            211100  0001111  11234456677777655443 445677787 4688887776666779999996 7766654 4


Q ss_pred             ee
Q 013274          414 GG  415 (446)
Q Consensus       414 gs  415 (446)
                      ..
T Consensus       259 ta  260 (295)
T d2ghsa1         259 SA  260 (295)
T ss_dssp             EB
T ss_pred             EC
Confidence            33

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=0.026  Score=52.67  Aligned_cols=150  Identities=11%  Similarity=0.129  Sum_probs=83.2

Q ss_pred             EeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEE-------
Q 013274           50 QVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTG-------  122 (446)
Q Consensus        50 ~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~-------  122 (446)
                      .|.+ ++.++ --..||.|.+||++++...            .++....+  ....+....++| |++.++..       
T Consensus        23 ~W~~-~~~~~-~~~~~g~i~~~~~~~~~~~------------~l~~~~~~--~~~~~~~~~~Sp-D~~~vl~~~~~~~~~   85 (465)
T d1xfda1          23 KWIS-DTEFI-YREQKGTVRLWNVETNTST------------VLIEGKKI--ESLRAIRYEISP-DREYALFSYNVEPIY   85 (465)
T ss_dssp             CBSS-SSCBC-CCCSSSCEEEBCGGGCCCE------------EEECTTTT--TTTTCSEEEECT-TSSEEEEEESCCCCS
T ss_pred             EEeC-CCcEE-EEeCCCcEEEEECCCCCEE------------EEEcCccc--cccccceeEECC-CCCeEEEEEccccee
Confidence            5664 45544 4457889999999876421            11111111  112333444555 77776654       


Q ss_pred             --eCCCeEEEEECCCCeeeEEEec---CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeee-CCCCCe---
Q 013274          123 --SYDHYVKVWDTNCTRVVMNFKM---PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS-GHRDGI---  193 (446)
Q Consensus       123 --s~D~~i~iWd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~-~h~~~v---  193 (446)
                        +..+.+.++|+.++........   .+.+....++|++   ..+|... ++.|++.+..++..++... +..+.|   
T Consensus        86 r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG---~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG  161 (465)
T d1xfda1          86 QHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKG---QQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNG  161 (465)
T ss_dssp             SSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSST---TCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEE
T ss_pred             EeeccccEEEEEccCCceeeccCccCCccccceeeeccCC---ceEEEEe-cceEEEEecCCCceEEEecccCcceeecc
Confidence              3456788999988765332111   1222334566654   3455543 6789999987776544332 222212   


Q ss_pred             --------------EEEEEecCCCeEEEEeeCCCcEEEEEc
Q 013274          194 --------------MTVEWSTSSEWILVTGGCDGAIRFWDI  220 (446)
Q Consensus       194 --------------~sv~~s~~~~~~l~S~s~Dg~I~iWd~  220 (446)
                                    .++-|||++++++..--.+..+..+.+
T Consensus       162 ~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~  202 (465)
T d1xfda1         162 LSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMEL  202 (465)
T ss_dssp             ECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred             ccchhhhhhhccccceEEECCCCCeEEEEEecccccceeec
Confidence                          467799999985443334455665554

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.006  Score=57.27  Aligned_cols=111  Identities=8%  Similarity=0.042  Sum_probs=63.5

Q ss_pred             eEEEEEccCCCEEEEee---------cCCcEEEEecCcCceeeeeeeEEEeecCCCeEEEEcCCCcEEEEeCCCceEEEE
Q 013274          312 VTGLKVTEDGMYLLSAG---------SDSRIRLWDVESGRNTLVNFETVRLQTSKPIQLATTQDPAVVFVPCMTAVKAFD  382 (446)
Q Consensus       312 v~~l~fs~dg~~l~sgs---------~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  382 (446)
                      +....|||||++|+-..         ..+.+.++|+.++.....  ............+.++|++..++......+.+.+
T Consensus        63 ~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l--~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~  140 (465)
T d1xfda1          63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSL--DPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCA  140 (465)
T ss_dssp             CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEEC--CCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEES
T ss_pred             cceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeec--cCccCCccccceeeeccCCceEEEEecceEEEEe
Confidence            34456899999877653         346788899988753221  1100111122236678888877665555555555


Q ss_pred             eecCceEE-E--------ecccccc---------eEEEEEcCCCCEEEEeeCC-CcEEEeC
Q 013274          383 IWSGKTCL-T--------FRGHYEY---------VNCCCFSSQDQELYTGGND-RQILVWC  424 (446)
Q Consensus       383 ~~~~~~~~-~--------l~gH~~~---------v~~~~fSpd~~~lvtgs~D-~~v~vW~  424 (446)
                      ...+...+ +        +.|..+.         -..+-|||||++||....| ..|..+.
T Consensus       141 ~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~  201 (465)
T d1xfda1         141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIME  201 (465)
T ss_dssp             SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEE
T ss_pred             cCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceee
Confidence            54443322 1        2222211         1467799999999987654 4455553

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.16  E-value=0.39  Score=42.52  Aligned_cols=111  Identities=14%  Similarity=0.077  Sum_probs=60.9

Q ss_pred             cCCCCEEEEeeCCC-----------cEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEE
Q 013274           53 LTEERYLLSGASDS-----------SVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVT  121 (446)
Q Consensus        53 ~~~~~~l~s~s~Dg-----------~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s  121 (446)
                      +.++++++-|+.+.           .+.+||..+++.....        .  ..    ..|........+. .++.+++.
T Consensus        28 ~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~--------~--~~----~~~~~~~~~~~~~-~~g~i~v~   92 (387)
T d1k3ia3          28 PTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT--------V--TV----TKHDMFCPGISMD-GNGQIVVT   92 (387)
T ss_dssp             TTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE--------E--EE----CSCCCSSCEEEEC-TTSCEEEE
T ss_pred             eeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecC--------C--CC----CCcccceeEEEEe-cCCcEEEe
Confidence            45788888877431           3779999877642110        0  00    1111111122333 37888888


Q ss_pred             EeCC-CeEEEEECCCCeeeEEEecCCc--eEEeeeccCCCCceEEEEeeCC------CcEEEEeCCCCc
Q 013274          122 GSYD-HYVKVWDTNCTRVVMNFKMPGK--VYRTAMSPLAASHMLIAAGTED------VQVRLCDIASGA  181 (446)
Q Consensus       122 ~s~D-~~i~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~lasgs~d------~~v~vwd~~~~~  181 (446)
                      |+.+ .++.+||..+......-.++..  ....+...   +..+++.|+.+      ..+.+||..++.
T Consensus        93 Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~---dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3          93 GGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS---DGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             CSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT---TSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             ecCCCcceeEecCccCcccccccccccccccceeeec---CCceeeeccccccccccceeeeecCCCCc
Confidence            8766 6899999887665432222211  22333333   23455665432      368999998774

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.76  E-value=0.59  Score=41.96  Aligned_cols=93  Identities=8%  Similarity=0.059  Sum_probs=58.1

Q ss_pred             CCcEEE-EEeCCCeEEEEECCCCeeeEEEec--CCceEEeeeccCCCCceEEEEeeCC------------------CcEE
Q 013274          115 DTGLFV-TGSYDHYVKVWDTNCTRVVMNFKM--PGKVYRTAMSPLAASHMLIAAGTED------------------VQVR  173 (446)
Q Consensus       115 ~~~~l~-s~s~D~~i~iWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~lasgs~d------------------~~v~  173 (446)
                      ||+++. .-..+..|-+-|+++.++......  ....+.+...... +..+++..+.+                  +.+.
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p-~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t  176 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  176 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCC-CeEEEEccCccccccCCCCccccchhhcceEEE
Confidence            455554 445789999999999887554443  2334443433332 23355554442                  2356


Q ss_pred             EEeCCCCceeeeeeCCCCCeEEEEEecCCCeEEEEe
Q 013274          174 LCDIASGAISQTLSGHRDGIMTVEWSTSSEWILVTG  209 (446)
Q Consensus       174 vwd~~~~~~~~~l~~h~~~v~sv~~s~~~~~~l~S~  209 (446)
                      ++|.++.+...++.- .+....+.++++++|+++|+
T Consensus       177 ~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~Ts  211 (459)
T d1fwxa2         177 AVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTS  211 (459)
T ss_dssp             EEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEE
T ss_pred             EEecCCceEEEEeee-CCChhccccCCCCCEEEEEe
Confidence            789988877666552 23566789999999976655

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.73  E-value=0.052  Score=49.08  Aligned_cols=107  Identities=7%  Similarity=0.115  Sum_probs=53.6

Q ss_pred             EEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCce---EEEEeeCCCcEEEEeCCCCceeeeeeCCCCCeE
Q 013274          118 LFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHM---LIAAGTEDVQVRLCDIASGAISQTLSGHRDGIM  194 (446)
Q Consensus       118 ~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~v~  194 (446)
                      .|.|||..|.|+|+-+.+++.++.+..-...   .+...+.+..   +|--|....+-.+...+.++....=..|.-   
T Consensus        15 ~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~---~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP---   88 (459)
T d1fwxa2          15 GFWSSGQSGEMRILGIPSMRELMRVPVFNRC---SATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHV---   88 (459)
T ss_dssp             EEECCBTTCEEEEEEETTCCEEEEEESSSCC---TTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCE---
T ss_pred             EEeeCCccceEEEEecCCcceEEEeeeecCC---CCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCC---
Confidence            3678999999999999999988877631110   0111110000   000000000000000000000000001111   


Q ss_pred             EEEEec---CCCeEEEEeeCCCcEEEEEccCCceeEEee
Q 013274          195 TVEWST---SSEWILVTGGCDGAIRFWDIRRAGCFRVLD  230 (446)
Q Consensus       195 sv~~s~---~~~~~l~S~s~Dg~I~iWd~~~~~~~~~~~  230 (446)
                      .+++..   ||+|+++.-..++.|-+=|+++-++.++++
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~  127 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILE  127 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEe
Confidence            334433   788999998899999999999888776654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.45  E-value=0.65  Score=39.68  Aligned_cols=149  Identities=9%  Similarity=0.047  Sum_probs=85.4

Q ss_pred             EEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEEEEeCCCe
Q 013274           48 SLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFVTGSYDHY  127 (446)
Q Consensus        48 ~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~s~s~D~~  127 (446)
                      +..|++.++.+..+=-..+.|.-||.+++..           .++.        ....+.++...+ ++.++++ +.+ -
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~-----------~~~~--------~~~~~~~i~~~~-dg~l~va-~~~-g   79 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRK-----------TVHA--------LPFMGSALAKIS-DSKQLIA-SDD-G   79 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEE-----------EEEE--------CSSCEEEEEEEE-TTEEEEE-ETT-E
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeE-----------EEEE--------CCCCcEEEEEec-CCCEEEE-EeC-c
Confidence            4457766666666655678888888876532           0111        112344555554 6655554 554 5


Q ss_pred             EEEEECCCCeeeEEEecCC-----ceEEeeeccCCCCceEEEEeeC---CCcEEEEeCCCCceeeeeeCCCCCeEEEEEe
Q 013274          128 VKVWDTNCTRVVMNFKMPG-----KVYRTAMSPLAASHMLIAAGTE---DVQVRLCDIASGAISQTLSGHRDGIMTVEWS  199 (446)
Q Consensus       128 i~iWd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~lasgs~---d~~v~vwd~~~~~~~~~l~~h~~~v~sv~~s  199 (446)
                      +.++|.++++.........     ..+...+.+.  +..++.+...   .+.-.+|.+..++....+.+ -..-..+.|+
T Consensus        80 l~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~--G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s  156 (295)
T d2ghsa1          80 LFLRDTATGVLTLHAELESDLPGNRSNDGRMHPS--GALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFS  156 (295)
T ss_dssp             EEEEETTTCCEEEEECSSTTCTTEEEEEEEECTT--SCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEEC
T ss_pred             cEEeecccceeeEEeeeecCCCcccceeeEECCC--CCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeec
Confidence            8999999887544332211     1334444332  2233333221   22345666666654433332 3345788999


Q ss_pred             cCCCeEEEEeeCCCcEEEEEcc
Q 013274          200 TSSEWILVTGGCDGAIRFWDIR  221 (446)
Q Consensus       200 ~~~~~~l~S~s~Dg~I~iWd~~  221 (446)
                      ++++.++++-+..+.|..+++.
T Consensus       157 ~d~~~l~~~dt~~~~I~~~~~d  178 (295)
T d2ghsa1         157 PDGTTGYFVDTKVNRLMRVPLD  178 (295)
T ss_dssp             TTSCEEEEEETTTCEEEEEEBC
T ss_pred             CCCceEEEeecccceeeEeeec
Confidence            9998777787778888888764

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.24  E-value=1.4  Score=37.46  Aligned_cols=106  Identities=16%  Similarity=0.249  Sum_probs=66.7

Q ss_pred             EEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCC-ceeeeeeC
Q 013274          110 IWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG-AISQTLSG  188 (446)
Q Consensus       110 ~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~-~~~~~l~~  188 (446)
                      .-+| ..+.+|-=+ -.+++++|+++.+.+..+.++..+..-.|..  .  ..|+--+ +..|+=|+++.. .+.+.+..
T Consensus        69 IMhP-~~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWis--~--~~L~lVT-~taVYHW~~~g~s~P~k~fdR  141 (327)
T d1utca2          69 IMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS--L--NTVALVT-DNAVYHWSMEGESQPVKMFDR  141 (327)
T ss_dssp             EECS-SSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEESS--S--SEEEEEC-SSEEEEEESSSSCCCEEEEEC
T ss_pred             hcCC-CCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEecC--C--CEEEEEc-CCceEEEcccCCCCchhhhhh
Confidence            3444 445555444 4689999999999999998877652222222  1  2333332 457999999654 45566655


Q ss_pred             CC----CCeEEEEEecCCCeEEEEe--eC----CCcEEEEEccC
Q 013274          189 HR----DGIMTVEWSTSSEWILVTG--GC----DGAIRFWDIRR  222 (446)
Q Consensus       189 h~----~~v~sv~~s~~~~~~l~S~--s~----Dg~I~iWd~~~  222 (446)
                      |.    ..|..-..+++.+|++++|  ..    .|.|.||....
T Consensus       142 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er  185 (327)
T d1utca2         142 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR  185 (327)
T ss_dssp             CGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT
T ss_pred             cccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc
Confidence            53    3566667788999987765  22    35566666543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=93.24  E-value=1.4  Score=36.39  Aligned_cols=64  Identities=11%  Similarity=0.135  Sum_probs=35.1

Q ss_pred             cCeEEEEEccCCCEEEEee-cCC-----cEEEEecCcCceeeeeeeEEEee--cCCCeEEEEcCCCcEEEEe
Q 013274          310 GAVTGLKVTEDGMYLLSAG-SDS-----RIRLWDVESGRNTLVNFETVRLQ--TSKPIQLATTQDPAVVFVP  373 (446)
Q Consensus       310 ~~v~~l~fs~dg~~l~sgs-~D~-----~i~lWd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  373 (446)
                      +.+....|||||++|+-.+ .++     .|.+++..++.............  ........++|++..++..
T Consensus        41 ~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          41 GVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             SEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             CcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEE
Confidence            3467788999999887432 222     36666776665432211110000  1123456788888877664

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.71  E-value=2.3  Score=35.37  Aligned_cols=113  Identities=7%  Similarity=-0.051  Sum_probs=68.0

Q ss_pred             cEeEEEEeecCCcEEEEEeCCCeEEEEECCCCeeeEEEec-CCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCcee
Q 013274          105 AISSAIWYPVDTGLFVTGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAIS  183 (446)
Q Consensus       105 ~V~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~  183 (446)
                      .+.++.+...++.++.+-..++.|+..+++.......... .+....+++...  +..+..+-...+.|.+.+++.....
T Consensus        37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~--~~~lY~~d~~~~~I~~~~~dg~~~~  114 (263)
T d1npea_          37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHL--GRTIFWTDSQLDRIEVAKMDGTQRR  114 (263)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETT--TTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             cEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEecc--CCeEEEeccCCCEEEEEecCCceEE
Confidence            3555666655555556656678898888876544332321 134455555432  3455556666789999999766543


Q ss_pred             eeeeCCCCCeEEEEEecCCCeEEEEeeCCCcEEEEE
Q 013274          184 QTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWD  219 (446)
Q Consensus       184 ~~l~~h~~~v~sv~~s~~~~~~l~S~s~Dg~I~iWd  219 (446)
                      ..+...-.....+++.|...+++.+-...+.-+||.
T Consensus       115 ~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r  150 (263)
T d1npea_         115 VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIET  150 (263)
T ss_dssp             EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEE
T ss_pred             EEecccccCCcEEEEecccCcEEEeecCCCCcEEEE
Confidence            333344466789999998877666643333444553

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.53  E-value=3.2  Score=34.43  Aligned_cols=163  Identities=9%  Similarity=-0.003  Sum_probs=92.1

Q ss_pred             CCccceeEEEeecCCCCEEEEeeCCCcEEEEEcccCcCCCCCCccccccceEEeccccccCccccEeEEEEeecCCcEEE
Q 013274           41 PHKGSINSLQVDLTEERYLLSGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV  120 (446)
Q Consensus        41 ~H~~~v~~l~~s~~~~~~l~s~s~Dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~~~~~~~~l~  120 (446)
                      .+...+.+|+|+..++.+..+-..++.|+..+++....           ..++.      .-...+.++++-...+.+..
T Consensus        33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~-----------~~v~~------~~~~~p~~iAvD~~~~~lY~   95 (263)
T d1npea_          33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-----------TTIIR------QDLGSPEGIALDHLGRTIFW   95 (263)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-----------EEEEC------TTCCCEEEEEEETTTTEEEE
T ss_pred             cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCc-----------EEEEE------eccccccEEEEeccCCeEEE
Confidence            34456778999876666777767788888888764321           11111      01123455565444455555


Q ss_pred             EEeCCCeEEEEECCCCeeeEEEec-CCceEEeeeccCCCCceEEEEee--CCCcEEEEeCCCCceeeeeeCCCCCeEEEE
Q 013274          121 TGSYDHYVKVWDTNCTRVVMNFKM-PGKVYRTAMSPLAASHMLIAAGT--EDVQVRLCDIASGAISQTLSGHRDGIMTVE  197 (446)
Q Consensus       121 s~s~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lasgs--~d~~v~vwd~~~~~~~~~l~~h~~~v~sv~  197 (446)
                      +-...+.|.+.+++......-... ......+++.|..  +.++.+-.  ....|..-+++...........-....+++
T Consensus        96 ~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~--g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~gla  173 (263)
T d1npea_          96 TDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVR--GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLT  173 (263)
T ss_dssp             EETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTT--TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEE
T ss_pred             eccCCCEEEEEecCCceEEEEecccccCCcEEEEeccc--CcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEE
Confidence            666678999999876543222221 1334556665532  33443422  223355556655443333333334567899


Q ss_pred             EecCCCeEEEEeeCCCcEEEEEccC
Q 013274          198 WSTSSEWILVTGGCDGAIRFWDIRR  222 (446)
Q Consensus       198 ~s~~~~~~l~S~s~Dg~I~iWd~~~  222 (446)
                      +++.++.+.++-...+.|..-|+..
T Consensus       174 iD~~~~~lYw~d~~~~~I~~~~~~g  198 (263)
T d1npea_         174 FDAFSSQLCWVDAGTHRAECLNPAQ  198 (263)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTE
T ss_pred             EeecCcEEEEEeCCCCEEEEEECCC
Confidence            9887776666656667787777653

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=84.51  E-value=1.5  Score=41.42  Aligned_cols=78  Identities=9%  Similarity=-0.033  Sum_probs=47.7

Q ss_pred             CeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCC-CCeEEEEEecCCCe
Q 013274          126 HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHR-DGIMTVEWSTSSEW  204 (446)
Q Consensus       126 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~-~~v~sv~~s~~~~~  204 (446)
                      +.|.-+|+.+++.+-++........-.++   ....++..|+.|+.++.+|.++|+.+.++.-.. ..-.-+.|..+++.
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~---TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkq  520 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLY---TKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQ  520 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEE---ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeE---ecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEE
Confidence            46888888888887666544322211111   122366679999999999999999998775221 11122444446653


Q ss_pred             EE
Q 013274          205 IL  206 (446)
Q Consensus       205 ~l  206 (446)
                      ++
T Consensus       521 Yi  522 (571)
T d2ad6a1         521 YI  522 (571)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=83.99  E-value=2.1  Score=40.17  Aligned_cols=60  Identities=15%  Similarity=0.185  Sum_probs=43.5

Q ss_pred             CeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeC
Q 013274          126 HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSG  188 (446)
Q Consensus       126 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~  188 (446)
                      +.+.-||+.+++.+-.+........-.++-   ...++..|+.|+.++.+|.++|+.+.++.-
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~T---agglVF~G~~dg~l~A~Da~tGe~LW~~~l  497 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLST---AGNLVFQGTAAGQMHAYSADKGEALWQFEA  497 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEE---TTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEE---CCCEEEEECCCCcEEEEECCCCcEeEEEEC
Confidence            578899999999888777654432211211   123666889999999999999999987753

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.86  E-value=1.8  Score=40.86  Aligned_cols=82  Identities=20%  Similarity=0.229  Sum_probs=51.7

Q ss_pred             CeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeeeCCCCC-eEEEEEecCCC-
Q 013274          126 HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLSGHRDG-IMTVEWSTSSE-  203 (446)
Q Consensus       126 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~~h~~~-v~sv~~s~~~~-  203 (446)
                      +.|.-+|+.+++.+-.+........-.++   ....++.+|+.|+.++.+|.++|+.+.+++-.... -.-+.|..+++ 
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~ls---tagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~q  542 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLA---TAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEE---ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeE---EcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            67888899999888777654433211111   12236667999999999999999999887632221 11144555665 


Q ss_pred             eEEEEee
Q 013274          204 WILVTGG  210 (446)
Q Consensus       204 ~~l~S~s  210 (446)
                      ++++.++
T Consensus       543 Yv~i~ag  549 (582)
T d1flga_         543 YLGVTVG  549 (582)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEeC
Confidence            5444444

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=80.67  E-value=11  Score=32.25  Aligned_cols=111  Identities=13%  Similarity=0.067  Sum_probs=65.3

Q ss_pred             EEEccCCCEEEEeecCC-----------cEEEEecCcCceeeeeeeEEEeec-CCCeEEEEcCCCcEEEEeCC--CceEE
Q 013274          315 LKVTEDGMYLLSAGSDS-----------RIRLWDVESGRNTLVNFETVRLQT-SKPIQLATTQDPAVVFVPCM--TAVKA  380 (446)
Q Consensus       315 l~fs~dg~~l~sgs~D~-----------~i~lWd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~  380 (446)
                      .....+|+.++-|+.+.           .+.+||+.+++-....  ...... ......++..++.+++.+..  ..+.+
T Consensus        25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~--~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~  102 (387)
T d1k3ia3          25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT--VTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  102 (387)
T ss_dssp             EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE--EEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecC--CCCCCcccceeEEEEecCCcEEEeecCCCcceeE
Confidence            33456888888777531           2679999987542211  111111 11223456678877777643  47888


Q ss_pred             EEeecCceE--EEecccccceEEEEEcCCCCEEEEeeCC------CcEEEeCCCCC
Q 013274          381 FDIWSGKTC--LTFRGHYEYVNCCCFSSQDQELYTGGND------RQILVWCPSRH  428 (446)
Q Consensus       381 ~d~~~~~~~--~~l~gH~~~v~~~~fSpd~~~lvtgs~D------~~v~vW~~~~~  428 (446)
                      ||..+..-.  ..+..... -..++..+||+.++.|+.+      ..+.+|++.+.
T Consensus       103 yd~~~~~w~~~~~~~~~r~-~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3         103 YDSSSDSWIPGPDMQVARG-YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             EEGGGTEEEECCCCSSCCS-SCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             ecCccCccccccccccccc-ccceeeecCCceeeeccccccccccceeeeecCCCC
Confidence            988665422  12221111 2356677899999988764      35888988754

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=80.37  E-value=2.6  Score=39.84  Aligned_cols=59  Identities=15%  Similarity=0.103  Sum_probs=41.3

Q ss_pred             CeEEEEECCCCeeeEEEecCCceEEeeeccCCCCceEEEEeeCCCcEEEEeCCCCceeeeee
Q 013274          126 HYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASGAISQTLS  187 (446)
Q Consensus       126 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lasgs~d~~v~vwd~~~~~~~~~l~  187 (446)
                      +.|.-||+.+++.+-..........-.++.   ...++..|+.|+.++.+|.++|+.+.++.
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsT---agglVF~G~~Dg~l~A~Da~TGe~LW~~~  511 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMAT---AGDLVFYGTLDGYLKARDSDTGDLLWKFK  511 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEE---TTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ceEEEEeCCCCceecccCCCCCCccceeEe---cCCEEEEECCCCeEEEEECCCCcEeeEEE
Confidence            578889999998876655433322111111   12366679999999999999999998775