Citrus Sinensis ID: 013284


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440------
MKHQAMELHFSQSPRTPKIVFTITITLIILAIISLHYPLSGNPIFGFSKYYSSPSPEPSSPSSLNNNDSDQGSIKEVEGSEKCDIFSGEWVPNPEGPYYTNTTCWAIHEHQNCMKYGRPDTDFMKWRWKPDGCELPIFNPSQFLEIVRGKSMAFVGDSVARNQMQSLICLLSRVEYPVDVSYTPEERFKRWRYTSYNFTLATFWTPHLVKSKEADSDGPTNTGLFNLYLDEFDEEWTTQIDDFDFLIISAGHWFFRPMVYYENNKIVGCKYCLLDNVTDMKMFYGYRSAFRTAFKAIYSLENYKGITFLRTFAPSHFENGLWNQGGNCVRTRPFKSNETTLEGDNLELYMIQIEEFKAAEKEGQRRGKRFRLLDTTQAMLLRPDGHPSRYGHWPHENVTLYNDCVHWCLPGPIDTWSDFLLEMLKMEGIRSYEDKLYPSDRKMRFR
ccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccEEEEEEEccHHHHHHHHHHHHHHccccccEEEcccccEEEEEEEEcccEEEEEEcccccccccccccccccccccccccccccHHHHHccccccEEEEEcccccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccEEEEEEccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccc
cccEEEEcccccccccccccHHHHHHHHHHHHHHHHHcccccccHEcccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccHcccccccHcEEEEcccccccccccHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHHHccccccEEEEccccEEEEEEccccEEEEEEEccEEEEcccccccccccccEEEEEEccccHHHHHHcccccEEEEEccEEEEcccEEEEccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEcHHHHHccccccccccccccccccccccccEEccccccccHHHHHHHHHHHHcccccHHHcccHHHHHHccc
mkhqamelhfsqsprtpkiVFTITITLIILAIISlhyplsgnpifgfskyysspspepsspsslnnndsdqgsikevegsekcdifsgewvpnpegpyytnttcwaihehqncmkygrpdtdfmkwrwkpdgcelpifnpsqfLEIVRGKSMAFVGDSVARNQMQSLICLLsrveypvdvsytpeerfkrwrytsynftlatfwtphlvkskeadsdgptntglfnlyldefdeewttqiddfDFLIISAghwffrpmvyyennkivgckyclldnvtdmkMFYGYRSAFRTAFKAIYSLEnykgitflrtfapshfenglwnqggncvrtrpfksnettlegdnlELYMIQIEEFKAAEKEGQRRGKRFRLLDTTQAmllrpdghpsryghwphenvtlyndcvhwclpgpidtWSDFLLEMLKMEGirsyedklypsdrkmrfr
mkhqamelhfsqsprtpkIVFTITITLIILAIISLHYPLSGNPIFGFSKYYSSPSPEPSSPSSLNNNDSDQGSIKEVEGSEKCDIFSGEWVPNPEGPYYTNTTCWAIHEHQNCMKYGRPDTDFMKWRWKPDGCELPIFNPSQFLEIVRGKSMAFVGDSVARNQMQSLICLlsrveypvdvsytpeerfkrwrYTSYNFTLATFWTPHLVKSKEADSDGPTNTGLFNLYLDEFDEEWTTQIDDFDFLIISAGHWFFRPMVYYENNKIVGCKYCLLDNVTDMKMFYGYRSAFRTAFKAIYSLENYKGITFLRTFAPSHFENGLWNQGGNCVRTRPFKsnettlegdnlELYMIQIEEFKAaekegqrrgkrfrlLDTTQAMLLRPDGHPSRYGHWPHENVTLYNDCVHWCLPGPIDTWSDFLLEMLKMEgirsyedklypsdrkmrfr
MKHQAMELHFSQSPRTPKIVFtititliilaiislHYPLSGNPIFGFSKYYsspspepsspssLNNNDSDQGSIKEVEGSEKCDIFSGEWVPNPEGPYYTNTTCWAIHEHQNCMKYGRPDTDFMKWRWKPDGCELPIFNPSQFLEIVRGKSMAFVGDSVARNQMQSLICLLSRVEYPVDVSYTPEERFKRWRYTSYNFTLATFWTPHLVKSKEADSDGPTNTGLFNLYLDEFDEEWTTQIDDFDFLIISAGHWFFRPMVYYENNKIVGCKYCLLDNVTDMKMFYGYRSAFRTAFKAIYSLENYKGITFLRTFAPSHFENGLWNQGGNCVRTRPFKSNETTLEGDNLELYMIQIEEFKAAEKEGQRRGKRFRLLDTTQAMLLRPDGHPSRYGHWPHENVTLYNDCVHWCLPGPIDTWSDFLLEMLKMEGIRSYEDKLYPSDRKMRFR
*****************KIVFTITITLIILAIISLHYPLSGNPIFGFSKYY*******************************CDIFSGEWVPNPEGPYYTNTTCWAIHEHQNCMKYGRPDTDFMKWRWKPDGCELPIFNPSQFLEIVRGKSMAFVGDSVARNQMQSLICLLSRVEYPVDVSYTPEERFKRWRYTSYNFTLATFWTPHLVK*********TNTGLFNLYLDEFDEEWTTQIDDFDFLIISAGHWFFRPMVYYENNKIVGCKYCLLDNVTDMKMFYGYRSAFRTAFKAIYSLENYKGITFLRTFAPSHFENGLWNQGGNCVRTRPFKSNETTLEGDNLELYMIQIEEFK************FRLLDTTQAMLLRPDGHPSRYGHWPHENVTLYNDCVHWCLPGPIDTWSDFLLEMLKMEGIRSY**************
*******************VFTITITLIILAIISLHYPLSGNPIF**************************************DIFSGEWVPNPEGPYYTNTTCWAIHEHQNCMKYGRPDTDFMKWRWKPDGCELPIFNPSQFLEIVRGKSMAFVGDSVARNQMQSLICLLSRVEYPVDVSYTPEERFKRWRYTSYNFTLATFWTPHLVKSKEAD***PT*TGLFNLYLDEFDEEWTTQIDDFDFLIISAGHWFFRPMVYYENNKIVGCKYCLLDNVTDMKMFYGYRSAFRTAFKAIYSLENYKGITFLRTFAPSHFENGLWNQGGNCVRTRPFKSNETTLEGDNLELYMIQIEEFKAAEKEGQRRGKRFRLLDTTQAMLLRPDGHPSRYGHWPHENVTLYNDCVHWCLPGPIDTWSDFLLEM*******************MRFR
**********SQSPRTPKIVFTITITLIILAIISLHYPLSGNPIFGFSKYY*****************************EKCDIFSGEWVPNPEGPYYTNTTCWAIHEHQNCMKYGRPDTDFMKWRWKPDGCELPIFNPSQFLEIVRGKSMAFVGDSVARNQMQSLICLLSRVEYPVDVSYTPEERFKRWRYTSYNFTLATFWTPHLVKSKEADSDGPTNTGLFNLYLDEFDEEWTTQIDDFDFLIISAGHWFFRPMVYYENNKIVGCKYCLLDNVTDMKMFYGYRSAFRTAFKAIYSLENYKGITFLRTFAPSHFENGLWNQGGNCVRTRPFKSNETTLEGDNLELYMIQIEEFKAAEKEGQRRGKRFRLLDTTQAMLLRPDGHPSRYGHWPHENVTLYNDCVHWCLPGPIDTWSDFLLEMLKMEGIRSYEDKLYP********
*KHQAMELHFSQSPRTPKIVFTITITLIILAIISLHYPLSGNPIFGFS********************************EKCDIFSGEWVPNPEGPYYTNTTCWAIHEHQNCMKYGRPDTDFMKWRWKPDGCELPIFNPSQFLEIVRGKSMAFVGDSVARNQMQSLICLLSRVEYPVDVSYTPEERFKRWRYTSYNFTLATFWTPHLVKSKEADSDGPTNTGLFNLYLDEFDEEWTTQIDDFDFLIISAGHWFFRPMVYYENNKIVGCKYCLLDNVTDMKMFYGYRSAFRTAFKAIYSLENYKGITFLRTFAPSHFENGLWNQGGNCVRTRPFKSNETTLEGDNLELYMIQIEEFKAAEKEGQRRGKRFRLLDTTQAMLLRPDGHPSRYGHWPHENVTLYNDCVHWCLPGPIDTWSDFLLEMLKMEG******************
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKHQAMELHFSQSPRTPKIVFTITITLIILAIISLHYPLSGNPIFGFSKYYSSPSPEPSSPSSLNNNDSDQGSIKEVEGSEKCDIFSGEWVPNPEGPYYTNTTCWAIHEHQNCMKYGRPDTDFMKWRWKPDGCELPIFNPSQFLEIVRGKSMAFVGDSVARNQMQSLICLLSRVEYPVDVSYTPEERFKRWRYTSYNFTLATFWTPHLVKSKEADSDGPTNTGLFNLYLDEFDEEWTTQIDDFDFLIISAGHWFFRPMVYYENNKIVGCKYCLLDNVTDMKMFYGYRSAFRTAFKAIYSLENYKGITFLRTFAPSHFENGLWNQGGNCVRTRPFKSNETTLEGDNLELYMIQIEEFKAAEKEGQRRGKRFRLLDTTQAMLLRPDGHPSRYGHWPHENVTLYNDCVHWCLPGPIDTWSDFLLEMLKMEGIRSYEDKLYPSDRKMRFR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query446
224079910441 hypothetical protein POPTRDRAFT_1076074 0.968 0.979 0.737 0.0
356545636426 PREDICTED: uncharacterized protein LOC10 0.948 0.992 0.714 0.0
388513303436 unknown [Lotus japonicus] 0.959 0.981 0.674 0.0
307136485442 hypothetical protein [Cucumis melo subsp 0.809 0.816 0.787 1e-179
449447464441 PREDICTED: uncharacterized protein LOC10 0.966 0.977 0.687 1e-179
449482260378 PREDICTED: uncharacterized LOC101210676 0.804 0.949 0.785 1e-178
356573657435 PREDICTED: uncharacterized protein LOC10 0.930 0.954 0.699 1e-176
359488348509 PREDICTED: uncharacterized protein LOC10 0.964 0.844 0.683 1e-176
356551072433 PREDICTED: uncharacterized protein LOC10 0.937 0.965 0.672 1e-173
356573883425 PREDICTED: uncharacterized protein LOC10 0.923 0.969 0.654 1e-171
>gi|224079910|ref|XP_002305969.1| hypothetical protein POPTRDRAFT_1076074 [Populus trichocarpa] gi|222848933|gb|EEE86480.1| hypothetical protein POPTRDRAFT_1076074 [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/438 (73%), Positives = 369/438 (84%), Gaps = 6/438 (1%)

Query: 9   HFSQSPRTPKIVFTITITLIILAIISLHYPLSGNPIFGFSKYYSSPSPEPSSPSSLNNND 68
           H +    TP I  T+T TL++  ++    PL    +        S S    S SS     
Sbjct: 10  HHALRKNTPTIALTVTFTLVLFTVV----PLCYPLLGYPLYLLKSFSKSQISISSYV--A 63

Query: 69  SDQGSIKEVEGSEKCDIFSGEWVPNPEGPYYTNTTCWAIHEHQNCMKYGRPDTDFMKWRW 128
              GSI E E  +KCDIF+GEW+PNP  PYYTNTTCWAIHEHQNCMKYGRPDT FMKWRW
Sbjct: 64  VKYGSIFEHESEQKCDIFTGEWIPNPHAPYYTNTTCWAIHEHQNCMKYGRPDTGFMKWRW 123

Query: 129 KPDGCELPIFNPSQFLEIVRGKSMAFVGDSVARNQMQSLICLLSRVEYPVDVSYTPEERF 188
           +PDGCELP+FNP+QFLEIV+GKSMAFVGDSV RNQMQSLICLLSRVEYP+DVSYTP+E F
Sbjct: 124 QPDGCELPVFNPAQFLEIVKGKSMAFVGDSVGRNQMQSLICLLSRVEYPIDVSYTPDEHF 183

Query: 189 KRWRYTSYNFTLATFWTPHLVKSKEADSDGPTNTGLFNLYLDEFDEEWTTQIDDFDFLII 248
           KRWRY SYNFTLATFWTPHLVK++E D+ GPT+TGLFNLYLDEFDE WTTQI++FD++II
Sbjct: 184 KRWRYPSYNFTLATFWTPHLVKAEETDAYGPTHTGLFNLYLDEFDEGWTTQIEEFDYVII 243

Query: 249 SAGHWFFRPMVYYENNKIVGCKYCLLDNVTDMKMFYGYRSAFRTAFKAIYSLENYKGITF 308
           +AGHWF+RP VYYEN ++VGC++CLL+NVTD+ M++GYR AFRTAF+A+ SLENYKGITF
Sbjct: 244 NAGHWFYRPCVYYENRQVVGCRFCLLENVTDLPMYFGYRKAFRTAFRALNSLENYKGITF 303

Query: 309 LRTFAPSHFENGLWNQGGNCVRTRPFKSNETTLEGDNLELYMIQIEEFKAAEKEGQRRGK 368
           LRTFAPSHFENG WN+GGNCVR RPF+SNET+LEG N ELYM Q+EEFK AEKEG++RG 
Sbjct: 304 LRTFAPSHFENGEWNKGGNCVRRRPFRSNETSLEGINFELYMTQLEEFKLAEKEGKKRGL 363

Query: 369 RFRLLDTTQAMLLRPDGHPSRYGHWPHENVTLYNDCVHWCLPGPIDTWSDFLLEMLKMEG 428
           RFRLLDTTQAMLLRPDGHPSRYGHWPHENVTLYNDCVHWCLPGPIDTW+DFLLEMLKMEG
Sbjct: 364 RFRLLDTTQAMLLRPDGHPSRYGHWPHENVTLYNDCVHWCLPGPIDTWNDFLLEMLKMEG 423

Query: 429 IRSYEDKLYPSDRKMRFR 446
           +RSYE+KL  SDRKM+ R
Sbjct: 424 VRSYEEKLDLSDRKMKLR 441




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545636|ref|XP_003541243.1| PREDICTED: uncharacterized protein LOC100811842 [Glycine max] Back     alignment and taxonomy information
>gi|388513303|gb|AFK44713.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|307136485|gb|ADN34286.1| hypothetical protein [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|449447464|ref|XP_004141488.1| PREDICTED: uncharacterized protein LOC101210676 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449482260|ref|XP_004156230.1| PREDICTED: uncharacterized LOC101210676 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356573657|ref|XP_003554974.1| PREDICTED: uncharacterized protein LOC100817694 [Glycine max] Back     alignment and taxonomy information
>gi|359488348|ref|XP_002279300.2| PREDICTED: uncharacterized protein LOC100242952 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356551072|ref|XP_003543902.1| PREDICTED: uncharacterized protein LOC100814731 [Glycine max] Back     alignment and taxonomy information
>gi|356573883|ref|XP_003555085.1| PREDICTED: uncharacterized protein LOC100820191 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query446
TAIR|locus:2146077426 TBL19 "AT5G15900" [Arabidopsis 0.809 0.847 0.681 1.4e-144
TAIR|locus:2146062526 TBL21 "AT5G15890" [Arabidopsis 0.769 0.652 0.621 3.9e-131
TAIR|locus:2091388414 TBL22 "AT3G28150" [Arabidopsis 0.764 0.823 0.459 1.7e-91
TAIR|locus:2076909373 TBL20 "AT3G02440" [Arabidopsis 0.542 0.648 0.624 4.7e-87
TAIR|locus:2035342456 TBL25 "AT1G01430" [Arabidopsis 0.771 0.754 0.433 3.3e-86
TAIR|locus:2125048442 TBL26 "AT4G01080" [Arabidopsis 0.751 0.757 0.452 1.1e-85
TAIR|locus:2128489430 TBL24 "AT4G23790" [Arabidopsis 0.771 0.8 0.410 7.4e-82
TAIR|locus:2136113432 TBL23 "AT4G11090" [Arabidopsis 0.798 0.824 0.413 1.6e-79
TAIR|locus:2020628416 TBL27 "TRICHOME BIREFRINGENCE- 0.775 0.831 0.395 7.9e-78
TAIR|locus:2153077501 YLS7 "AT5G51640" [Arabidopsis 0.813 0.724 0.360 4.1e-65
TAIR|locus:2146077 TBL19 "AT5G15900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1413 (502.5 bits), Expect = 1.4e-144, P = 1.4e-144
 Identities = 252/370 (68%), Positives = 297/370 (80%)

Query:    77 VEGSEKCDIFSGEWVPNPEGPYYTNTTCWAIHEHQNCMKYGRPDTDFMKWRWKPDGCE-- 134
             V   + CDIFSGEWVPNPE PYYTNTTCWAIHEHQNCMK+GRPDTDF+KW+WKP GCE  
Sbjct:    61 VTSHDSCDIFSGEWVPNPEAPYYTNTTCWAIHEHQNCMKFGRPDTDFIKWKWKPYGCEDG 120

Query:   135 LPIFNPSQFLEIVRGKSMAFVGDSVARNQMQSLICLLSRVEYPVDVSYTPEERFKRWRYT 194
             LP+F+P +FLEIVRGK+MAFVGDSV+RN MQSLICLLS+VEYP+D S   ++ FKRW Y 
Sbjct:   121 LPVFDPVRFLEIVRGKTMAFVGDSVSRNHMQSLICLLSQVEYPMDASVKNDDYFKRWTYE 180

Query:   195 SYNFTLATFWTPHLVKSKEADSDGPTNTGLFNLYLDEFDEEWTTQIDDFDFLIISAGHWF 254
             +YNFT+A FWTPHLVKSKE D   P +  +F+LYLDE DE WT  I DFDF+IIS+GHW 
Sbjct:   181 TYNFTIAAFWTPHLVKSKEPDQTQPKHIDIFDLYLDEADESWTADIGDFDFVIISSGHWH 240

Query:   255 FRPMVYYENNKIVGCKYCLLDNVTDMKMFYGYRSAFRTAFKAIYSLENYKGITFLRTFAP 314
             +RP VYYEN  I GC YC L N+TD+ MFYGYR AFRTAFKAI   E++KG+ +LR+FAP
Sbjct:   241 YRPSVYYENRTITGCHYCQLPNITDLTMFYGYRKAFRTAFKAILDSESFKGVMYLRSFAP 300

Query:   315 SHFENGLWNQGGNCVRTRPFKSNETTLEGDNLELYMIQIEEFKAAEKEGQRRGKRFRLLD 374
             SHFE GLWN+GG+C+R +P++SNET  E   ++L+ IQ+EEF  AE+E +++GKR RLLD
Sbjct:   301 SHFEGGLWNEGGDCLRKQPYRSNETQDE-TTMKLHKIQLEEFWRAEEEAKKKGKRLRLLD 359

Query:   375 TTQAMLLRPDGHPSRYGHWPHENVTLYNDCVHWCLPGPIDTWSDFLLEMLKMEGIRSYED 434
             TTQAM LRPDGHPSRYGH P  NVTLYNDCVHWCLPGPID  +DFLL MLK E     ED
Sbjct:   360 TTQAMWLRPDGHPSRYGHIPEANVTLYNDCVHWCLPGPIDNLNDFLLAMLKRE-----ED 414

Query:   435 KLYPSD-RKM 443
             K + +  RKM
Sbjct:   415 KGFLAQVRKM 424




GO:0008150 "biological_process" evidence=ND
GO:0009507 "chloroplast" evidence=ISM
TAIR|locus:2146062 TBL21 "AT5G15890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091388 TBL22 "AT3G28150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076909 TBL20 "AT3G02440" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035342 TBL25 "AT1G01430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125048 TBL26 "AT4G01080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2128489 TBL24 "AT4G23790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2136113 TBL23 "AT4G11090" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020628 TBL27 "TRICHOME BIREFRINGENCE-LIKE 27" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153077 YLS7 "AT5G51640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
gw1.IV.4155.1
hypothetical protein (350 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query446
pfam13839270 pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Estera 1e-92
PLN02629387 PLN02629, PLN02629, powdery mildew resistance 5 1e-40
pfam1441655 pfam14416, PMR5N, PMR5 N terminal Domain 1e-27
>gnl|CDD|222410 pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p Back     alignment and domain information
 Score =  280 bits (719), Expect = 1e-92
 Identities = 110/291 (37%), Positives = 144/291 (49%), Gaps = 22/291 (7%)

Query: 135 LPIFNPSQFLEIVRGKSMAFVGDSVARNQMQSLICLLSRVEYPVDVSYTPEERFKRWRYT 194
           LP F+  QFLE +RGK + FVGDS++RNQ +SL+CLLS+VE P   +   + R  R+R+ 
Sbjct: 1   LPRFDAQQFLERLRGKRVVFVGDSLSRNQWESLVCLLSQVEPPKGKTLERDGRLFRFRFK 60

Query: 195 SYNFTLATFWTPHLVKSKEADSDGPTNTGLFNLYLDEFDEEWTTQIDDFDFLIISAGHWF 254
            YN T+  +W+P LV     +SD         L LD  DE+W+      D L+ ++GHW+
Sbjct: 61  DYNVTIEFYWSPFLV-----ESDNAEEGK-RVLKLDSIDEKWSKLWPGADVLVFNSGHWW 114

Query: 255 FRPMVYYENNKIVGCKYCLLDNVTDMKMFYGYRSAFRTAFKAIYS-LENYKGITFLRTFA 313
               VY       G  YC   N  +M     YR A  T  K +   L   K   F RTF+
Sbjct: 115 LHRKVYI------GWDYCQKSNYKEMGFLDAYRKALETWAKWVDVNLPPSKTRVFFRTFS 168

Query: 314 PSHFENGLWNQGGNCVRTRPFKSNETTLEGDNLELYMIQIEEFKAAEKEGQRRGKRFRLL 373
           P HFE G WN GG+C  T P     +  +G   E+  I  E    A           +LL
Sbjct: 169 PVHFEGGEWNTGGSCYETEPLLG--SEYKGLTPEMIDIVNEVLSRAA-----MKTPVKLL 221

Query: 374 DTTQAMLLRPDGHPSRYGHWPHENVTLYNDCVHWCLPGPIDTWSDFLLEML 424
           D T     R DGHPS Y            DC+HWCLPG  DTW++ LL +L
Sbjct: 222 DITLLSQYRKDGHPSVYRKPGPPKKE--QDCLHWCLPGVPDTWNELLLALL 270


The PC-Esterase family is comprised of Cas1p, the Homo sapiens C7orf58, Arabidopsis thaliana PMR5 and a group of plant freezing resistance/coldacclimatization proteins typified by Arabidopsis thaliana ESKIMO1, animal FAM55D proteins, and animal FAM113 proteins. The PC-Esterase family has features that are both similar and different from the canonical GDSL/SGNH superfamily. The members of this family are predicted to have Acyl esterase activity and predicted to modify cell-surface biopolymers such as glycans and glycoproteins. The Cas1p protein has a Cas1_AcylT domain, in addition, with the opposing acyltransferase activity. The C7orf58 family has a ATP-Grasp domain fused to the PC-Esterase and is the first identified secreted tubulin-tyrosine ligase like enzyme in eukaryotes. The plant family with PMR5, ESK1, TBL3 etc have a N-terminal C rich potential sugar binding domain followed by the PC-Esterase domain. Length = 270

>gnl|CDD|215338 PLN02629, PLN02629, powdery mildew resistance 5 Back     alignment and domain information
>gnl|CDD|206583 pfam14416, PMR5N, PMR5 N terminal Domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 446
PLN02629387 powdery mildew resistance 5 100.0
PF13839263 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family f 100.0
PF1441655 PMR5N: PMR5 N terminal Domain 99.93
cd01842183 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SG 98.12
cd01841174 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfa 96.17
cd01829200 SGNH_hydrolase_peri2 SGNH_peri2; putative periplas 95.9
cd01834191 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SG 95.08
cd01820214 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-A 94.64
cd04502171 SGNH_hydrolase_like_7 Members of the SGNH-hydrolas 83.88
cd01827188 sialate_O-acetylesterase_like1 sialate O-acetylest 83.29
cd01836191 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, Fee 82.44
>PLN02629 powdery mildew resistance 5 Back     alignment and domain information
Probab=100.00  E-value=1.7e-106  Score=823.95  Aligned_cols=324  Identities=31%  Similarity=0.603  Sum_probs=271.7

Q ss_pred             CCCCCCCcccceeeCCCCCCcCCCCCC-CccCCcccccCCCCCccccceeecCCCCCCCCCChHHHHHHHhCCceEEEec
Q 013284           79 GSEKCDIFSGEWVPNPEGPYYTNTTCW-AIHEHQNCMKYGRPDTDFMKWRWKPDGCELPIFNPSQFLEIVRGKSMAFVGD  157 (446)
Q Consensus        79 ~~~~CD~~~G~WV~d~~~PlY~~~~Cp-~i~~~~~C~~nGRpD~~yl~WrWqP~gC~LprFd~~~fl~~LrgK~i~FVGD  157 (446)
                      ..++||+|+|+||+|+++|+|++++|| ||+++|||++|||||++|++|||||++|+||||||.+||++||||+||||||
T Consensus        49 ~~~~CD~f~G~WV~D~s~PlY~~~~Cp~fi~~~~nC~knGRPD~~Yl~WRWqP~gC~LPRFda~~fLe~~RgKrl~FVGD  128 (387)
T PLN02629         49 NQSTCALFVGTWVRDDSYPLYQSSDCPGVIDPEFNCQMYGRPDSDYLKYRWQPLNCELPRFNGLEFLLKMKGKTVMFVGD  128 (387)
T ss_pred             CccccCCCCCeEecCCCCCCCCCCCCccccccccchhhcCCCCcchhhccccCCCCCCCCcCHHHHHHHhcCCeEEEecc
Confidence            367899999999999999999999999 9999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHhhcccccCcceeecCCCceeEEEEeecCeEEEEEEccccccccccCCCCCCCcceeeeeccccchhhh
Q 013284          158 SVARNQMQSLICLLSRVEYPVDVSYTPEERFKRWRYTSYNFTLATFWTPHLVKSKEADSDGPTNTGLFNLYLDEFDEEWT  237 (446)
Q Consensus       158 Sl~Rnq~~SL~CLL~~~~~p~~~~~~~~~~~~~~~f~~~n~tv~f~wsPfLv~~~~~~~~~~~~~~~~~l~lD~~~~~W~  237 (446)
                      ||+|||||||+|||++++.+......++++.++|+|++||+||+|||+||||+.+...       +...|+||+++.. +
T Consensus       129 SL~RNQ~eSLvClL~~~~p~~~~~~~~~~~~~~~~F~~yN~TV~~ywspfLV~~~~~~-------~~~~l~LD~id~~-a  200 (387)
T PLN02629        129 SLGRNQWESLICLISSSVPSTRTQMSRGDPLSTFKFLDYGVSISFYKAPYLVDIDAVQ-------GKRVLKLEEISGN-A  200 (387)
T ss_pred             ccchhHHHHHHHHhhccCCCCceeeecCCceEEEEeccCCEEEEEEecceEEeeecCC-------CceeEEecCcchh-h
Confidence            9999999999999998663333444556778999999999999999999999876543       2234677766532 3


Q ss_pred             ccCCCccEEEEccccccccceeeeecCeeeeeeccc--CCCcccchHHHHHHHHHHHHHHHHHh-cCCCcceEEEEecCC
Q 013284          238 TQIDDFDFLIISAGHWFFRPMVYYENNKIVGCKYCL--LDNVTDMKMFYGYRSAFRTAFKAIYS-LENYKGITFLRTFAP  314 (446)
Q Consensus       238 ~~~~~~DvlV~ntG~Ww~r~~~~~~~g~~vg~~~~~--~~~~~~~~~~~Ayr~alrt~~~wl~~-~~~~~t~VffRt~SP  314 (446)
                      ..+..+|||||||||||.++      +.++||+++.  ...+++|++.+||++||+||++||+. +++.+|+|||||+||
T Consensus       201 ~~w~~~DvlVfntghWw~~~------~~~~~~~~~~~g~~~~~~~~~~~A~r~al~T~~~wv~~~~~~~kt~vffrT~SP  274 (387)
T PLN02629        201 NAWRDADVLIFNTGHWWSHQ------GSLQGWDYIESGGTYYQDMDRLVALEKALRTWAYWVDTNVDRSRTRVFFQSISP  274 (387)
T ss_pred             hhhccCCEEEEeCccccCCC------CeeEEeeeeccCCccccCccHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEecCc
Confidence            44445999999999999885      3456776663  45678999999999999999999964 567899999999999


Q ss_pred             CCCCCCCCCCCC-----CCC-ccccCCCCCcccCCCcHHHHHHHHHHHHHHHHhhhccCcceEEeeccccccCCCCCCCC
Q 013284          315 SHFENGLWNQGG-----NCV-RTRPFKSNETTLEGDNLELYMIQIEEFKAAEKEGQRRGKRFRLLDTTQAMLLRPDGHPS  388 (446)
Q Consensus       315 ~Hf~~g~W~~Gg-----~C~-~t~P~~~~e~~~~~~~~~~~~i~~e~~~~~~~~~~~~~~~v~lLDIT~ls~~R~DgHps  388 (446)
                      +||+||+||+||     +|. +|+|+.++++ .++...++.  ++|++.+      .++.+|++||||.||++|||||||
T Consensus       275 ~Hfe~g~Wn~gg~~~~~~C~~et~P~~~~~~-~~~~~~~~~--~ve~v~~------~~~~~v~lLDIT~ls~lR~DgHPs  345 (387)
T PLN02629        275 THYNPSEWSAGASTTTKNCYGETTPMSGMTY-PGAYPDQMR--VVDEVIR------GMHNPAYLLDITLLSELRKDGHPS  345 (387)
T ss_pred             ccccCCCcCCCCCCCCCCCccCCccCcCccc-cCcchHHHH--HHHHHHH------hcCCceEEEechhhhhcCCCCCcc
Confidence            999999999875     587 7999975543 344444443  3344332      256899999999999999999999


Q ss_pred             CCCCC----CCCCCCCCCCcccccCCChhhHHHHHHHHHHH
Q 013284          389 RYGHW----PHENVTLYNDCVHWCLPGPIDTWSDFLLEMLK  425 (446)
Q Consensus       389 ~y~~~----~~~~~~~~~DClHWCLPGv~DtWNelL~~~L~  425 (446)
                      +|+..    +.+++..++||+||||||||||||||||++|+
T Consensus       346 ~Y~~~~~~~~~~~p~~~~DC~HWCLPGvpDTWNelL~a~L~  386 (387)
T PLN02629        346 IYSGDLSPSQRANPDRSADCSHWCLPGLPDTWNQLFYTALF  386 (387)
T ss_pred             cccCCCchhhccCCCCCCCcccccCCCCCccHHHHHHHHHh
Confidence            99754    22344567999999999999999999999996



>PF13839 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p Back     alignment and domain information
>PF14416 PMR5N: PMR5 N terminal Domain Back     alignment and domain information
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily Back     alignment and domain information
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases Back     alignment and domain information
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases Back     alignment and domain information
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily Back     alignment and domain information
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases Back     alignment and domain information
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases Back     alignment and domain information
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases Back     alignment and domain information
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query446
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 43.7 bits (102), Expect = 1e-04
 Identities = 61/426 (14%), Positives = 114/426 (26%), Gaps = 138/426 (32%)

Query: 71  QGSIKEVEGSEKCDIFSGEWVPNPEGPYYTNTTCWAIHEHQNCMKYG------RPDTDFM 124
           Q   K +   E+ D        +           W +   Q  M         R +  F+
Sbjct: 39  QDMPKSILSKEEIDHIIMS--KDAVSGTLR--LFWTLLSKQEEMVQKFVEEVLRINYKFL 94

Query: 125 --KWRWKPDGCELPIFNPSQFLEIVRGKSMAFVGDSVAR----NQMQSLICLLSRVEYPV 178
               + +     +      +  + +   +  F   +V+R     +++  +  L   +  +
Sbjct: 95  MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154

Query: 179 --------------DV--SYTPEERFKRWRYTSYNFTLATFWTPHLVKSKEADSDGPTNT 222
                         DV  SY  + +         +F +  FW    +  K  +S      
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKM--------DFKI--FW----LNLKNCNSPETVLE 200

Query: 223 GLFNLYLDEFDEEWTTQIDDFDFLIISAGHW------FFRPMVYYENNKIVGCKYCL--L 274
            L  L     D  WT++ D    + +             +   Y         + CL  L
Sbjct: 201 MLQKLLYQ-IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY---------ENCLLVL 250

Query: 275 DNVTDMKMFYGYRSAFR--------TAFKAIY---SLENYKGIT---FLRTFAPSHFENG 320
            NV + K +    +AF         T FK +    S      I+      T  P   ++ 
Sbjct: 251 LNVQNAKAW----NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 321 LWNQGGNCVRTRPFKSNETTLEGDNLELYMIQIEEFKAAEKEGQRRGKRFRLLDTTQAML 380
           L       +  RP       L  +   L +I                          A  
Sbjct: 307 L----LKYLDCRPQDLPREVLTTNPRRLSII--------------------------AES 336

Query: 381 LRPDGHPSRYGHWPHENVTLYNDCVHWCLPGPIDTWSDFLLEMLKMEGIRSYEDKLYPSD 440
           +R     + + +W H N                    D L  +++     S    L P++
Sbjct: 337 IRD--GLATWDNWKHVN-------------------CDKLTTIIES----SLN-VLEPAE 370

Query: 441 RKMRFR 446
            +  F 
Sbjct: 371 YRKMFD 376


Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query446
4h08_A200 Putative hydrolase; GDSL-like lipase/acylhydrolase 95.72
3p94_A204 GDSL-like lipase; serine hydrolase, catalytic tria 92.94
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron} Back     alignment and structure
Probab=95.72  E-value=0.0078  Score=54.09  Aligned_cols=51  Identities=20%  Similarity=0.196  Sum_probs=36.0

Q ss_pred             CccEEEEccccccccceeeeecCeeeeeecccCCCcccchHHHHHHHHHHHHHHHHHhcCCCcceEEEEecCCCCC
Q 013284          242 DFDFLIISAGHWFFRPMVYYENNKIVGCKYCLLDNVTDMKMFYGYRSAFRTAFKAIYSLENYKGITFLRTFAPSHF  317 (446)
Q Consensus       242 ~~DvlV~ntG~Ww~r~~~~~~~g~~vg~~~~~~~~~~~~~~~~Ayr~alrt~~~wl~~~~~~~t~VffRt~SP~Hf  317 (446)
                      .+|+|||+.|..=..                        ...+.|+..++++++.++.. .++++|+|-+..|...
T Consensus        74 ~pd~Vvi~~G~ND~~------------------------~~~~~~~~~l~~ii~~l~~~-~p~~~ii~~~~~P~~~  124 (200)
T 4h08_A           74 KFDVIHFNNGLHGFD------------------------YTEEEYDKSFPKLIKIIRKY-APKAKLIWANTTPVRT  124 (200)
T ss_dssp             CCSEEEECCCSSCTT------------------------SCHHHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCEE
T ss_pred             CCCeEEEEeeeCCCC------------------------CCHHHHHHHHHHHHHHHhhh-CCCccEEEeccCCCcc
Confidence            489999999854100                        12467888888888877653 3567889988888654



>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query446
d3dc7a1207 Uncharacterized protein Lp3323 {Lactobacillus plan 96.09
d2o14a2208 Hypothetical protein YxiM {Bacillus subtilis [TaxI 95.78
>d3dc7a1 c.23.10.9 (A:18-224) Uncharacterized protein Lp3323 {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: SGNH hydrolase
family: BT2961-like
domain: Uncharacterized protein Lp3323
species: Lactobacillus plantarum [TaxId: 1590]
Probab=96.09  E-value=0.011  Score=50.38  Aligned_cols=13  Identities=38%  Similarity=0.519  Sum_probs=11.7

Q ss_pred             hCCceEEEechhh
Q 013284          148 RGKSMAFVGDSVA  160 (446)
Q Consensus       148 rgK~i~FVGDSl~  160 (446)
                      ..|||+|+|||++
T Consensus         3 ~~kri~~iGDSit   15 (207)
T d3dc7a1           3 SFKRPAWLGDSIT   15 (207)
T ss_dssp             CCSSEEEEESTTT
T ss_pred             CCCEEEEEehHhh
Confidence            4689999999998



>d2o14a2 c.23.10.8 (A:160-367) Hypothetical protein YxiM {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure