Citrus Sinensis ID: 013287

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440------

MGKAPLSFRRLCLRRRSKKKLEPPPSPAPPSMGASSAPTAAQNAIAGAVSAATGKGKKKAGGARLWMRFDFTGKSELVECDKSVIIERAGVPARDLRILGPVFSHSSNILAREKAMVVNLEFIKAIVTSQEVLLLDPLRQEVLPFVDQLRQQLPQRTVSNSNGAGPTEAQDNEMQVSTCGQWLPVPEAVEGFQCELPFEFQVLEIALEVVCTYLDSSVAELEKDAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLDDNEDMAHLYLTRRRIQNQQAEALPGPAASNSIVPKASHLRRLSSNRSGSLVSSNLMDDNDVEDLEMLLEAYFMQLDGTRNKILSVREYIDDTEDYVNIQLDNQRNELIQLQLILTIASFAIAANTLIAGIFGMNIPCQLYETDGIFEIFVGSTTTACVLLFLLVLGYARWKKLLGT

ccccccHHHHHHHHHcccccccccccccccccccccccccccHHHccccccccccccccccccEEEEEEcccccEEEEEEcHHHHHHHHcccccccccccccccccccccccccEEEEEccccccccccccEEEccccccccHHHHHHHHHHcccccccccccccccccccHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc

cccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEccHHHHHHHccccHHHHHHccccccccccEEccccEEEEEHHHEEEEEEccEEEEEccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc

MGKAPLSFRRLCLRRrskkklepppspappsmgassapTAAQNAIAGAVSaatgkgkkkaggarlwmrfdftgkselvecdksviieragvpardlrilgpvfshssniLAREKAMVVNLEFIKAIVTSQEvllldplrqevLPFVDQLRqqlpqrtvsnsngagpteaqdnemqvstcgqwlpvpeavegfqcelpfEFQVLEIALEVVCTYLDSSvaelekdaYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLDDNEDMAHLYLTRRRIQNqqaealpgpaasnsivpkashlrrlssnrsgslvssnlmddndVEDLEMLLEAYFMQLDGTRNKILSVREYIDDTEDYVNIQLDNQRNELIQLQLILTIASFAIAANTLIAGIfgmnipcqlyetdgiFEIFVGSTTTACVLLFLLVLGYARWKKLLGT

mgkaplsfrrLCLRrrskkklepppspappsmGASSAPTAAQNAIAGAVsaatgkgkkkaggarLWMRFDFTgkselvecdkSVIIEragvpardlrilgpvfshssniLAREKAMVVNLEFIKAIVTSQEVLLLDPLRQEVLPFVDQLRQQLPQRTVSNSNGAGPTEAQDNEMQVSTCGQWLPVPEAVEGFQCELPFEFQVLEIALEVVCTYLDSSVAELEKDAYPVLDELARnvstknlehvrslksnlTRLLARVQKVRDEIEHLLDDNEDMAHLYLTRRRIQNQQAEalpgpaasnsiVPKASHLRrlssnrsgslvssnlmDDNDVEDLEMLLEAYFMQLDGTRNKILSVREYIDDTEDYVNIQLDNQRNELIQLQLILTIASFAIAANTLIAGIFGMNIPCQLYETDGIFEIFVGSTTTACVLLFLLVLGYARWKKLLGT

MGKAPLSFrrlclrrrskkklEpppspappsmgassaptaaQNAIagavsaatgkgkkkaggaRLWMRFDFTGKSELVECDKSVIIERAGVPARDLRILGPVFSHSSNILAREKAMVVNLEFIKAIVTSQEVLLLDPLRQEVLPFVDQLRQQLPQRTVSNSNGAGPTEAQDNEMQVSTCGQWLPVPEAVEGFQCELPFEFQVLEIALEVVCTYLDSSVAELEKDAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLDDNEDMAHLYLTRRRIQNQQAEALPGPAASNSIVPKAshlrrlssnrsgslvssnlMDDNDVEDLEMLLEAYFMQLDGTRNKILSVREYIDDTEDYVNIQLDNQRNELIQLQLILTIASFAIAANTLIAGIFGMNIPCQLYETDGIFEIFVGSTTTACVLLFLLVLGYARWKKLLGT

************************************************************GGARLWMRFDFTGKSELVECDKSVIIERAGVPARDLRILGPVFSHSSNILAREKAMVVNLEFIKAIVTSQEVLLLDPLRQEVLPFVDQL**************************VSTCGQWLPVPEAVEGFQCELPFEFQVLEIALEVVCTYLDSSVAELEKDAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLDDNEDMAHLYLTR*************************************************EDLEMLLEAYFMQLDGTRNKILSVREYIDDTEDYVNIQLDNQRNELIQLQLILTIASFAIAANTLIAGIFGMNIPCQLYETDGIFEIFVGSTTTACVLLFLLVLGYARWKKLL**

******S**********************************************************WMRFDFTGKSELVECDKSVIIERAGVPARDLRILGPVFSHSSNILAREKAMVVNLEFIKAIVTSQEVLLLDPLRQEVLPFVDQLR*************************************AVEGFQCELPFEFQVLEIALEVVCTYLDSSVAELEKDAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLDDNEDMAHLYLTRRRIQ**************************************LMDDNDVEDLEMLLEAYFMQLDGTRNKILSVREYIDDTEDYVNIQLDNQRNELIQLQLILTIASFAIAANTLIAGIFGMNIPCQLYETDGIFEIFVGSTTTACVLLFLLVLGYARWKKLLG*

MGKAPLSFRRLCLRRRS********************************************GARLWMRFDFTGKSELVECDKSVIIERAGVPARDLRILGPVFSHSSNILAREKAMVVNLEFIKAIVTSQEVLLLDPLRQEVLPFVDQLRQQLPQRTVSNSNGAGPTEAQDNEMQVSTCGQWLPVPEAVEGFQCELPFEFQVLEIALEVVCTYLDSSVAELEKDAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLDDNEDMAHLYLTRRRIQNQQAEALPGPAASNSIVPKASHLRRLSSNRSGSLVSSNLMDDNDVEDLEMLLEAYFMQLDGTRNKILSVREYIDDTEDYVNIQLDNQRNELIQLQLILTIASFAIAANTLIAGIFGMNIPCQLYETDGIFEIFVGSTTTACVLLFLLVLGYARWKKLLGT

************************************************************GGARLWMRFDFTGKSELVECDKSVIIERAGVPARDLRILGPVFSHSSNILAREKAMVVNLEFIKAIVTSQEVLLLDPLRQEVLPFVDQLRQQLP***************************************CELPFEFQVLEIALEVVCTYLDSSVAELEKDAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLDDNEDMAHLYLTRRRIQ*****************************************DNDVEDLEMLLEAYFMQLDGTRNKILSVREYIDDTEDYVNIQLDNQRNELIQLQLILTIASFAIAANTLIAGIFGMNIPCQLYETDGIFEIFVGSTTTACVLLFLLVLGYARWKKLL**

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MGKAPLSFRRLCLRRRSKKKLEPPPSPAPPSMGASSAPTAAQNAIAGAVSAATGKGKKKAGGARLWMRFDFTGKSELVECDKSVIIERAGVPARDLRILGPVFSHSSNILAREKAMVVNLEFIKAIVTSQEVLLLDPLRQEVLPFVDQLRQQLPQRTVSNSNGAGPTEAQDNEMQVSTCGQWLPVPEAVEGFQCELPFEFQVLEIALEVVCTYLDSSVAELEKDAYPVLDELARNVSTKNLEHxxxxxxxxxxxxxxxxxxxxxxxxxxxxNEDMAHLYLTRRRIQNQQAEALPGPAASNSIVPKASHLRRLSSNRSGSLVSSNLMDDNDVEDLEMLLEAYFMQLDGTRNKILSVREYIDDTEDYVNIQLDNQRNELIQLQLILTIASFAIAANTLIAGIFGMNIPCQLYETDGIFEIFVGSTTTACVLLFLLVLGYARWKKLLGT

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		446	2.2.26 [Sep-21-2011]
Q93ZD7		436	Magnesium transporter MRS	yes	no	0.970	0.993	0.692	1e-168
A3BV82		468	Putative magnesium transp	yes	no	0.890	0.848	0.636	1e-137
A2Z9W7		468	Putative magnesium transp	N/A	no	0.890	0.848	0.636	1e-137
Q1PE39		408	Magnesium transporter MRS	no	no	0.831	0.909	0.521	1e-110
A2XCA0		435	Putative magnesium transp	N/A	no	0.849	0.871	0.515	1e-103
Q10S25		435	Putative magnesium transp	no	no	0.849	0.871	0.510	1e-102
Q304A0		386	Magnesium transporter MRS	no	no	0.818	0.945	0.440	2e-88
Q9SAH0		443	Magnesium transporter MRS	no	no	0.901	0.907	0.405	4e-83
Q9FLG2		394	Magnesium transporter MRS	no	no	0.840	0.951	0.470	5e-83
Q9S9N4		442	Magnesium transporter MRS	no	no	0.894	0.902	0.408	1e-80

>sp\|Q93ZD7\|MRS24_ARATH Magnesium transporter MRS2-4 OS=Arabidopsis thaliana GN=MRS2-4 PE=1 SV=1	Back alignment and function desciption

 Score =  592 bits (1525), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 311/449 (69%), Positives = 349/449 (77%), Gaps = 16/449 (3%)

Query: 1   MGKAPLSFRRLCLRRRSKKKLEPPPSPAPPSMGASSAPTAAQNAIAGAVSAATGKGKKKA 60
           MGK PLSFRRL   R  KK        A  S  +S  P    +A  G+   ATGK KKK 
Sbjct: 1   MGKGPLSFRRLSSIRHRKKGSAVKDDSAQTSTPSSPPPPLPIHA-GGSAVGATGKAKKKT 59

Query: 61  GGARLWMRFDFTGKSELVECDKSVIIERAGVPARDLRILGPVFSHSSNILAREKAMVVNL 120
           GGARLWMRFD TG  E+VECDKS II+RA VPARDLRILGPVFSHSSNILAREKA+VVNL
Sbjct: 60  GGARLWMRFDRTGAMEVVECDKSTIIKRASVPARDLRILGPVFSHSSNILAREKAIVVNL 119

Query: 121 EFIKAIVTSQEVLLLDPLRQEVLPFVDQLRQQLPQRTVSNSNGAGPTEAQDNEMQVSTCG 180
           E IKAIVT++EVLLLDPLR EVLPFV++L+QQ PQR     NG       +N +Q S   
Sbjct: 120 EVIKAIVTAEEVLLLDPLRPEVLPFVERLKQQFPQR-----NG------NENALQASANV 168

Query: 181 QWLPVPEAVEGFQCELPFEFQVLEIALEVVCTYLDSSVAELEKDAYPVLDELARNVSTKN 240
           Q    PEA EG Q ELPFEFQVLEIALEVVC+++D SVA LE +A+PVLDEL +NVST+N
Sbjct: 169 QSPLDPEAAEGLQSELPFEFQVLEIALEVVCSFVDKSVAALETEAWPVLDELTKNVSTEN 228

Query: 241 LEHVRSLKSNLTRLLARVQKVRDEIEHLLDDNEDMAHLYLTRRRIQNQQAEALPGPAASN 300
           LE+VRSLKSNLTRLLARVQKVRDE+EHLLDDNEDMA LYLTR+ IQNQQ EA+    ASN
Sbjct: 229 LEYVRSLKSNLTRLLARVQKVRDELEHLLDDNEDMADLYLTRKWIQNQQTEAILAGTASN 288

Query: 301 SIVPKA---SHLRRLSSNRSGSLVSSNLMDDNDVEDLEMLLEAYFMQLDGTRNKILSVRE 357
           SI   A   S+L RL+SNRS S+V+SN  +D DVEDLEMLLEAYFMQLDG RNKIL+VRE
Sbjct: 289 SIALPAHNTSNLHRLTSNRSASMVTSNTEED-DVEDLEMLLEAYFMQLDGMRNKILTVRE 347

Query: 358 YIDDTEDYVNIQLDNQRNELIQLQLILTIASFAIAANTLIAGIFGMNIPCQLYETDGIFE 417
           YIDDTEDYVNIQLDNQRNELIQLQL LTIASFAIAA TL+A +FGMNIPC LY   G+F 
Sbjct: 348 YIDDTEDYVNIQLDNQRNELIQLQLTLTIASFAIAAETLLASLFGMNIPCPLYSIHGVFG 407

Query: 418 IFVGSTTTACVLLFLLVLGYARWKKLLGT 446
            FV S T  C++LF++ LGYARWKKLLG+
Sbjct: 408 YFVWSVTALCIVLFMVTLGYARWKKLLGS 436

Magnesium transporter that may mediate the influx of magnesium.
Arabidopsis thaliana (taxid: 3702)

>sp\|A3BV82\|MRS2G_ORYSJ Putative magnesium transporter MRS2-G OS=Oryza sativa subsp. japonica GN=MRS2-G PE=1 SV=2	Back alignment and function description

>sp\|A2Z9W7\|MRS2G_ORYSI Putative magnesium transporter MRS2-G OS=Oryza sativa subsp. indica GN=MRS2-G PE=3 SV=2	Back alignment and function description

>sp\|Q1PE39\|MRS26_ARATH Magnesium transporter MRS2-6, mitochondrial OS=Arabidopsis thaliana GN=MRS2-6 PE=2 SV=1	Back alignment and function description

>sp\|A2XCA0\|MRS2H_ORYSI Putative magnesium transporter MRS2-H OS=Oryza sativa subsp. indica GN=MRS2-H PE=3 SV=1	Back alignment and function description

>sp\|Q10S25\|MRS2H_ORYSJ Putative magnesium transporter MRS2-H OS=Oryza sativa subsp. japonica GN=MRS2-H PE=2 SV=1	Back alignment and function description

>sp\|Q304A0\|MRS27_ARATH Magnesium transporter MRS2-7 OS=Arabidopsis thaliana GN=MRS2-7 PE=2 SV=1	Back alignment and function description

>sp\|Q9SAH0\|MRS2A_ARATH Magnesium transporter MRS2-10 OS=Arabidopsis thaliana GN=MRS2-10 PE=2 SV=1	Back alignment and function description

>sp\|Q9FLG2\|MRS22_ARATH Magnesium transporter MRS2-2 OS=Arabidopsis thaliana GN=MRS2-2 PE=2 SV=1	Back alignment and function description

>sp\|Q9S9N4\|MRS21_ARATH Magnesium transporter MRS2-1 OS=Arabidopsis thaliana GN=MRS2-1 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		446
255579659		453	RNA splicing protein mrs2, mitochondrial	0.896	0.883	0.795	0.0
356512596		451	PREDICTED: magnesium transporter MRS2-4-	0.923	0.913	0.743	1e-172
225447915		453	PREDICTED: magnesium transporter MRS2-4-	0.856	0.843	0.812	1e-172
356525367		450	PREDICTED: magnesium transporter MRS2-4-	0.923	0.915	0.735	1e-170
298204473		379	unnamed protein product [Vitis vinifera]	0.849	1.0	0.810	1e-170
449457037		443	PREDICTED: magnesium transporter MRS2-4-	0.838	0.844	0.770	1e-166
18411070		436	magnesium transporter MRS2-4 [Arabidopsi	0.970	0.993	0.692	1e-166
297820732		436	hypothetical protein ARALYDRAFT_907386 [	0.970	0.993	0.688	1e-165
7529740		463	putative protein [Arabidopsis thaliana]	0.872	0.840	0.706	1e-159
357519331		422	Magnesium transporter MRS2 [Medicago tru	0.917	0.969	0.688	1e-158

>gi\|255579659\|ref\|XP_002530669.1\| RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis] gi\|223529762\|gb\|EEF31700.1\| RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/406 (79%), Positives = 358/406 (88%), Gaps = 6/406 (1%)

Query: 41  AQNAIAGAVSAATGKGKKKAGGARLWMRFDFTGKSELVECDKSVIIERAGVPARDLRILG 100
           + N I G V       KKKAGGARLWMRFD  G SEL+ECDKSVII+R  +PARDLRILG
Sbjct: 54  SSNLIVGKVV------KKKAGGARLWMRFDRLGNSELMECDKSVIIKRVSIPARDLRILG 107

Query: 101 PVFSHSSNILAREKAMVVNLEFIKAIVTSQEVLLLDPLRQEVLPFVDQLRQQLPQRTVSN 160
           P+FSHSSNILAREKAMVVNLEFI+AIVT++EVL+LDPLRQEVLPFVDQLRQQ+P +   N
Sbjct: 108 PLFSHSSNILAREKAMVVNLEFIRAIVTAEEVLILDPLRQEVLPFVDQLRQQIPFKRPYN 167

Query: 161 SNGAGPTEAQDNEMQVSTCGQWLPVPEAVEGFQCELPFEFQVLEIALEVVCTYLDSSVAE 220
             GAG  E+QDNEM+++T GQWLPVPEA EG Q ELPFEFQVLEIALEVVCTYLDS+VA+
Sbjct: 168 VQGAGHAESQDNEMRIATGGQWLPVPEAQEGLQSELPFEFQVLEIALEVVCTYLDSNVAD 227

Query: 221 LEKDAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLDDNEDMAHLYL 280
           LE+DAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLDDNEDMA LYL
Sbjct: 228 LERDAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLDDNEDMADLYL 287

Query: 281 TRRRIQNQQAEALPGPAASNSIVPKASHLRRLSSNRSGSLVSSNLMDDNDVEDLEMLLEA 340
           TR+ IQNQQ+EAL G AASNSI+    HL RL+S+RS SLV+ +++D+NDVEDLEMLLEA
Sbjct: 288 TRKWIQNQQSEALLGAAASNSIITATPHLPRLNSSRSASLVTGSILDENDVEDLEMLLEA 347

Query: 341 YFMQLDGTRNKILSVREYIDDTEDYVNIQLDNQRNELIQLQLILTIASFAIAANTLIAGI 400
           YFMQLDGTRNKILSVREYIDDTEDYVNIQLDNQRNELIQLQL LTIASFAIA +TL+A  
Sbjct: 348 YFMQLDGTRNKILSVREYIDDTEDYVNIQLDNQRNELIQLQLTLTIASFAIAMDTLLASF 407

Query: 401 FGMNIPCQLYETDGIFEIFVGSTTTACVLLFLLVLGYARWKKLLGT 446
           FGMNIPC+LYE DG+F  FVGST+ AC LLF+LVLGYARWKKLLG+
Sbjct: 408 FGMNIPCRLYEMDGVFGYFVGSTSAACFLLFMLVLGYARWKKLLGS 453

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356512596\|ref\|XP_003525004.1\| PREDICTED: magnesium transporter MRS2-4-like [Glycine max]	Back alignment and taxonomy information

>gi\|225447915\|ref\|XP_002265195.1\| PREDICTED: magnesium transporter MRS2-4-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356525367\|ref\|XP_003531296.1\| PREDICTED: magnesium transporter MRS2-4-like [Glycine max]	Back alignment and taxonomy information

>gi\|298204473\|emb\|CBI23748.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449457037\|ref\|XP_004146255.1\| PREDICTED: magnesium transporter MRS2-4-like [Cucumis sativus] gi\|449495538\|ref\|XP_004159871.1\| PREDICTED: magnesium transporter MRS2-4-like [Cucumis sativus]	Back alignment and taxonomy information

>gi|18411070|ref|NP_567076.1| magnesium transporter MRS2-4 [Arabidopsis thaliana] gi|75163756|sp|Q93ZD7.1|MRS24_ARATH RecName: Full=Magnesium transporter MRS2-4; AltName: Full=Magnesium Transporter 6; Short=AtMGT6 gi|16209702|gb|AAL14408.1| AT3g58970/F17J16_20 [Arabidopsis thaliana] gi|25090327|gb|AAN72277.1| At3g58970/F17J16_20 [Arabidopsis thaliana] gi|25360850|gb|AAN73214.1| MRS2-4 [Arabidopsis thaliana] gi|332646334|gb|AEE79855.1| magnesium transporter MRS2-4 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|297820732\|ref\|XP_002878249.1\| hypothetical protein ARALYDRAFT_907386 [Arabidopsis lyrata subsp. lyrata] gi\|297324087\|gb\|EFH54508.1\| hypothetical protein ARALYDRAFT_907386 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|7529740\|emb\|CAB86925.1\| putative protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|357519331\|ref\|XP_003629954.1\| Magnesium transporter MRS2 [Medicago truncatula] gi\|355523976\|gb\|AET04430.1\| Magnesium transporter MRS2 [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		446
TAIR\|locus:2077665		436	MGT6 "magnesium transporter 6"	0.834	0.853	0.698	1.8e-133
TAIR\|locus:2174799		394	MGT9 "magnesium transporter 9"	0.822	0.931	0.465	3.1e-83
TAIR\|locus:2139905		408	MGT5 "AT4G28580" [Arabidopsis	0.724	0.791	0.5	1.8e-80
TAIR\|locus:2200542		442	MGT2 "magnesium transporter 2"	0.834	0.841	0.428	1.8e-71
TAIR\|locus:2091176		484	MGT4 "magnesium transporter 4"	0.251	0.231	0.459	7.2e-70
TAIR\|locus:2025767		443	MGT1 "magnesium transporter 1"	0.836	0.841	0.336	3e-46
TAIR\|locus:2044254		421	MGT3 "magnesium transporter 3"	0.825	0.874	0.303	6.8e-40
TAIR\|locus:2144746		294	AT5G09720 [Arabidopsis thalian	0.524	0.795	0.338	2.5e-26
DICTYBASE\|DDB_G0275813		747	DDB_G0275813 "Magnesium transp	0.255	0.152	0.330	9e-21
TAIR\|locus:2172641		459	MGT10 "magnesium (Mg) transpor	0.260	0.252	0.284	4.4e-20

TAIR\|locus:2077665 MGT6 "magnesium transporter 6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1292 (459.9 bits), Expect = 1.8e-133, Sum P(2) = 1.8e-133
 Identities = 269/385 (69%), Positives = 302/385 (78%)

Query:    64 RLWMRFDFTGKSELVECDKSVIIERAGVPARDLRILGPVFSHSSNILAREKAMVVNLEFI 123
             RLWMRFD TG  E+VECDKS II+RA VPARDLRILGPVFSHSSNILAREKA+VVNLE I
Sbjct:    63 RLWMRFDRTGAMEVVECDKSTIIKRASVPARDLRILGPVFSHSSNILAREKAIVVNLEVI 122

Query:   124 KAIVTSQEVLLLDPLRQEVLPFVDQLRQQLPQRTVSNSNGAGPTEAQDNEMQVSTCGQWL 183
             KAIVT++EVLLLDPLR EVLPFV++L+QQ PQR     NG       +N +Q S   Q  
Sbjct:   123 KAIVTAEEVLLLDPLRPEVLPFVERLKQQFPQR-----NG------NENALQASANVQSP 171

Query:   184 PVPEAVEGFQCELPFEFQVLEIALEVVCTYLDSSVAELEKDAYPVLDELARNVSTKNLEH 243
               PEA EG Q ELPFEFQVLEIALEVVC+++D SVA LE +A+PVLDEL +NVST+NLE+
Sbjct:   172 LDPEAAEGLQSELPFEFQVLEIALEVVCSFVDKSVAALETEAWPVLDELTKNVSTENLEY 231

Query:   244 VRSLKSNLTRLLARVQKVRDEIEHLLDDNEDMAHLYLTRRRIQNQQAEALPGPAASNSIV 303
             VRSLKSNLTRLLARVQKVRDE+EHLLDDNEDMA LYLTR+ IQNQQ EA+    ASNSI 
Sbjct:   232 VRSLKSNLTRLLARVQKVRDELEHLLDDNEDMADLYLTRKWIQNQQTEAILAGTASNSIA 291

Query:   304 PKAXXXXXXXXXXXXXXXX--XXXMDDNDVEDLEMLLEAYFMQLDGTRNKILSVREYIDD 361
               A                      +++DVEDLEMLLEAYFMQLDG RNKIL+VREYIDD
Sbjct:   292 LPAHNTSNLHRLTSNRSASMVTSNTEEDDVEDLEMLLEAYFMQLDGMRNKILTVREYIDD 351

Query:   362 TEDYVNIQLDNQRNELIQLQLILTIASFAIAANTLIAGIFGMNIPCQLYETDGIFEIFVG 421
             TEDYVNIQLDNQRNELIQLQL LTIASFAIAA TL+A +FGMNIPC LY   G+F  FV 
Sbjct:   352 TEDYVNIQLDNQRNELIQLQLTLTIASFAIAAETLLASLFGMNIPCPLYSIHGVFGYFVW 411

Query:   422 STTTACVLLFLLVLGYARWKKLLGT 446
             S T  C++LF++ LGYARWKKLLG+
Sbjct:   412 SVTALCIVLFMVTLGYARWKKLLGS 436

GO:0016020 "membrane" evidence=IEA;ISS

GO:0030001 "metal ion transport" evidence=IEA;ISS

GO:0046873 "metal ion transmembrane transporter activity" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IDA

TAIR\|locus:2174799 MGT9 "magnesium transporter 9" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2139905 MGT5 "AT4G28580" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2200542 MGT2 "magnesium transporter 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2091176 MGT4 "magnesium transporter 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2025767 MGT1 "magnesium transporter 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2044254 MGT3 "magnesium transporter 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2144746 AT5G09720 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0275813 DDB_G0275813 "Magnesium transporter MRS2, mitochondrial" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

TAIR\|locus:2172641 MGT10 "magnesium (Mg) transporter 10" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A2XCA0	MRS2H_ORYSI	No assigned EC number	0.5150	0.8497	0.8712	N/A	no
Q93ZD7	MRS24_ARATH	No assigned EC number	0.6926	0.9708	0.9931	yes	no
A2Z9W7	MRS2G_ORYSI	No assigned EC number	0.6368	0.8901	0.8482	N/A	no
A3BV82	MRS2G_ORYSJ	No assigned EC number	0.6368	0.8901	0.8482	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	MRS2-4	magnesium transporter CorA-like family protein; magnesium transporter CorA-like family protein; FUNCTIONS IN- metal ion transmembrane transporter activity; INVOLVED IN- metal ion transport; LOCATED IN- plasma membrane, membrane; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Mg2+ transporter protein, CorA-like (InterPro-IPR002523); BEST Arabidopsis thaliana protein match is- magnesium transporter CorA-like family protein (MRS2-6) (TAIR-AT4G28580.1); Has 487 Blast hits to 476 proteins in 123 species- Archae - 2; Bacteria - 17; Metazoa [...] (436 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	ZIP4	ZIP4 (ZINC TRANSPORTER 4 PRECURSOR); cation transmembrane transporter/ copper ion transmembrane [...] (408 aa)	•	0.788
	AT3G54700	carbohydrate transmembrane transporter/ phosphate transmembrane transporter/ sugar-hydrogen sym [...] (535 aa)	•	0.679
	AT1G76430	phosphate transporter family protein; phosphate transporter family protein; FUNCTIONS IN- phosp [...] (532 aa)	•	0.679
	AT1G80310	sulfate transmembrane transporter; sulfate transmembrane transporter; FUNCTIONS IN- sulfate tra [...] (464 aa)	•	0.677
	COPT1	COPT1 (copper transporter 1); copper ion transmembrane transporter; encodes a putative copper t [...] (170 aa)	•	0.621
	SULTR3;4	SULTR3;4 (SULFATE TRANSPORTER 3;4); sulfate transmembrane transporter; Encodes sulfate transpor [...] (653 aa)	•	0.589
	NRAMP1	NRAMP1 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 1); inorganic anion transmembrane tran [...] (532 aa)	•	0.534
	SULTR4;1	SULTR4;1; sulfate transmembrane transporter; Encodes a sulfate transporter. ; H(+)/sulfate cotr [...] (685 aa)	•	0.508
	CKX1	CKX1 (CYTOKININ OXIDASE/DEHYDROGENASE 1); cytokinin dehydrogenase; It encodes a protein whose s [...] (575 aa)	•	0.502
	PYK10	PYK10; beta-glucosidase/ copper ion binding / fucosidase/ hydrolase, hydrolyzing O-glycosyl com [...] (524 aa)	•	0.465

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		446
cd12823		323	cd12823, Mrs2_Mfm1p-like, Saccharomyces cerevisiae	1e-121
pfam01544		291	pfam01544, CorA, CorA-like Mg2+ transporter protei	2e-07
cd12821		285	cd12821, EcCorA_ZntB-like, Escherichia coli CorA-S	2e-07
cd12825		287	cd12825, EcCorA-like, Escherichia coli Mg2+ transp	9e-05
cd12822		289	cd12822, TmCorA-like, Thermotoga maritima CorA-lik	2e-04
cd12827		289	cd12827, EcCorA_ZntB-like_u2, uncharacterized bact	4e-04
COG0598		322	COG0598, CorA, Mg2+ and Co2+ transporters [Inorgan	7e-04

>gnl\|CDD\|213357 cd12823, Mrs2_Mfm1p-like, Saccharomyces cerevisiae inner mitochondrial membrane Mg2+ transporters Mfm1p and Mrs2p-like family	Back alignment and domain information

 Score =  355 bits (914), Expect = e-121
 Identities = 147/382 (38%), Positives = 213/382 (55%), Gaps = 63/382 (16%)

Query: 66  WMRFDFTGKSELVECDKSVIIERAGVPARDLRILGPVF-SHSSNILAREKAMVVNLEFIK 124
           W   D TG + +VE DKS ++   G+  RDLR+L P   S+  +IL RE A++VNLE I+
Sbjct: 1   WTVIDSTGNATVVELDKSELLRELGLQPRDLRLLDPTLTSYPPSILVRENAILVNLEHIR 60

Query: 125 AIVTSQEVLLLDPLR---QEVLPFVDQLRQQLPQRTVSNSNGAGPTEAQDNEMQVSTCGQ 181
           AI+T+ EVLL DP       V  F+++L+++L     S S   G                
Sbjct: 61  AIITADEVLLFDPDGSSSALVSAFLEELQRRLASSNGSESESGGEDS------------- 107

Query: 182 WLPVPEAVEGFQCELPFEFQVLEIALEVVCTYLDSSVAELEKDAYPVLDELARNVSTKNL 241
                         LPFEF+ LE ALE VC++L++ +  LE +A P+LDEL   +ST NL
Sbjct: 108 --------------LPFEFRALEAALEEVCSHLEAELKRLEPEALPLLDELTDKISTSNL 153

Query: 242 EHVRSLKSNLTRLLARVQKVRDEIEHLLDDNEDMAHLYLTRRRIQNQQAEALPGPAASNS 301
           E +  LK  L  L  RVQKVRD +E LLDD+EDMA +YLT +    ++ E          
Sbjct: 154 ERLLPLKRRLVELETRVQKVRDALEELLDDDEDMADMYLTDKAAGPERLE---------- 203

Query: 302 IVPKASHLRRLSSNRSGSLVSSNLMDDNDVEDLEMLLEAYFMQLDGTRNKILSVREYIDD 361
                                 +   ++D E++EMLLEAY  Q+D   NK+  +REYIDD
Sbjct: 204 ----------------------SSRKEDDHEEVEMLLEAYLQQVDELLNKLEELREYIDD 241

Query: 362 TEDYVNIQLDNQRNELIQLQLILTIASFAIAANTLIAGIFGMNIPCQLYETDGIFEIFVG 421
           TE+ +N+ LD++RN+L++L+L L+I + ++A  TL+AG+FGMN+P  L E+   F I  G
Sbjct: 242 TEELINLILDSRRNQLMRLELKLSIGTLSLAVGTLVAGLFGMNLPSGLEESPYAFWIVTG 301

Query: 422 STTTACVLLFLLVLGYARWKKL 443
            +    +L+F++VL Y R K+L
Sbjct: 302 GSVVGSILIFIVVLRYLRRKRL 323

A eukaryotic subfamily belonging to the Escherichia coli CorA-Salmonella typhimurium ZntB_like family (EcCorA_ZntB-like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This functionally diverse subfamily includes the inner mitochondrial membrane Mg2+ transporters Saccharomyces cerevisiae Mfm1p/Lpe10p, Mrs2p, and human MRS2/ MRS2L. It also includes a family of Arabidopsis thaliana proteins (AtMGTs) some of which are localized to distinct tissues, and not all of which can transport Mg2+. Structures of the intracellular domain of two EcCorA_ZntB-like family transporters: Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN, as in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport. Length = 323

>gnl\|CDD\|216560 pfam01544, CorA, CorA-like Mg2+ transporter protein	Back alignment and domain information

>gnl\|CDD\|213355 cd12821, EcCorA_ZntB-like, Escherichia coli CorA-Salmonella typhimurium ZntB_like family	Back alignment and domain information

>gnl\|CDD\|213359 cd12825, EcCorA-like, Escherichia coli Mg2+ transporter CorA_like subfamily	Back alignment and domain information

>gnl\|CDD\|213356 cd12822, TmCorA-like, Thermotoga maritima CorA-like family	Back alignment and domain information

>gnl\|CDD\|213361 cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family	Back alignment and domain information

>gnl\|CDD\|223671 COG0598, CorA, Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		446
KOG2662		414	consensus Magnesium transporters: CorA family [Ino	100.0
COG0598		322	CorA Mg2+ and Co2+ transporters [Inorganic ion tra	100.0
TIGR00383		318	corA magnesium Mg(2+) and cobalt Co(2+) transport	100.0
PRK09546		324	zntB zinc transporter; Reviewed	100.0
PRK11085		316	magnesium/nickel/cobalt transporter CorA; Provisio	99.97
PF01544		292	CorA: CorA-like Mg2+ transporter protein; InterPro	99.96
PRK09546		324	zntB zinc transporter; Reviewed	96.64
PRK11085		316	magnesium/nickel/cobalt transporter CorA; Provisio	95.17
PF01544		292	CorA: CorA-like Mg2+ transporter protein; InterPro	95.16
TIGR00383		318	corA magnesium Mg(2+) and cobalt Co(2+) transport	94.87
COG0598		322	CorA Mg2+ and Co2+ transporters [Inorganic ion tra	94.16
PF10267		395	Tmemb_cc2: Predicted transmembrane and coiled-coil	91.76
PF03904		230	DUF334: Domain of unknown function (DUF334); Inter	90.42
KOG3208		231	consensus SNARE protein GS28 [Intracellular traffi	87.54
KOG3850		455	consensus Predicted membrane protein [Function unk	87.09
PF05478		806	Prominin: Prominin; InterPro: IPR008795 The promin	85.59
PF02656		73	DUF202: Domain of unknown function (DUF202); Inter	82.33
PF07332		121	DUF1469: Protein of unknown function (DUF1469); In	81.26

>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]	Back alignment and domain information

Probab=100.00  E-value=3.5e-78  Score=602.33  Aligned_cols=361  Identities=53%  Similarity=0.847  Sum_probs=318.6

Q ss_pred             cccccCCCcccCCCceEEEEEcCCCCeeEEeechhhhHHHhCCChhhhhhhCCCCCccceeEeecCeeEeeccceeeEEe
Q 013287           49 VSAATGKGKKKAGGARLWMRFDFTGKSELVECDKSVIIERAGVPARDLRILGPVFSHSSNILAREKAMVVNLEFIKAIVT  128 (446)
Q Consensus        49 ~~~~~~~~~~~~~~~~~W~~id~~g~~~~~e~~k~~i~~~~~L~~RDLr~Ld~~~~~~~~Il~Re~aIlvnle~IraII~  128 (446)
                      .....+..+|+..+.+.|+.||..|+++..++||+.|+++.||+|||||++||.|+|+++|+.||+|||+|+||||||||
T Consensus        50 ~~~~~~~~~~~~~~~~sw~~~D~tGn~~~~e~dK~~i~~r~~L~aRDLR~ldp~~~~~ssIl~RE~aIVlNLe~IKAIIt  129 (414)
T KOG2662|consen   50 KIDSSSVSKKSGSGSRSWTRFDATGNSTVLEVDKYTIMKRVGLPARDLRKLDPSLSYPSSILGRENAIVLNLEHIKAIIT  129 (414)
T ss_pred             cccCcccccccCCcceEEEEEcCCCCeeeccccHHHHHHHcCCChhhhhhccccccCccccccccceEEeehhhhheeee
Confidence            34456778889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCeEEeeCCCCCCchhhHHHHHHhcCCCCCCCCCCCCCCCcccchhhhhccCCCCCCCccccCcccccchHHHHHHHHHH
Q 013287          129 SQEVLLLDPLRQEVLPFVDQLRQQLPQRTVSNSNGAGPTEAQDNEMQVSTCGQWLPVPEAVEGFQCELPFEFQVLEIALE  208 (446)
Q Consensus       129 ~d~vl~f~~~~~~~~~f~~~L~~rl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPfEf~~LE~iL~  208 (446)
                      +|+|++||..++ ++++.+++++|+......    .              +.+...  +  ....+.+||||+|||++|+
T Consensus       130 aeeVll~d~~~~-v~~~~~el~~~l~~~~~~----~--------------~~q~s~--~--~~~~~~lPFEFrALE~aLe  186 (414)
T KOG2662|consen  130 ADEVLLLDSLDP-VIPYNEELQRRLPVELES----R--------------GNQLSS--D--GGSKDELPFEFRALEVALE  186 (414)
T ss_pred             hhheeEeccccc-cchHHHHHHHHhcccccc----c--------------ccccCC--C--CCCCCCCchHHHHHHHHHH
Confidence            999999999887 889999999999865321    0              001100  0  1114789999999999999


Q ss_pred             HHHhhhhhHHHHHHhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhcchhhhhhh
Q 013287          209 VVCTYLDSSVAELEKDAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLDDNEDMAHLYLTRRRIQNQ  288 (446)
Q Consensus       209 ~v~~~Le~~~~~Le~~~~~vld~L~~~v~~~~Le~lr~lK~~L~~l~~~v~~vRe~L~~lL~dd~dm~~m~Lt~~~~~~~  288 (446)
                      .+|+.|+.++.+||..++++||+|+.++++.+|++|+.+|++|+.+.++++++||+|+++||||+||++||||+|+.+++
T Consensus       187 ~~~s~L~~~~~~Le~~~~~~LdeLt~~is~~nL~~lr~~k~~Lt~l~~rvqkvRDeLe~LLddd~Dma~mYLT~K~~~~~  266 (414)
T KOG2662|consen  187 AACSFLDSRLSELETEAYPLLDELTNKISTLNLERLRILKKRLTELTSRVQKVRDELEELLDDDDDMAEMYLTRKLAQAS  266 (414)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhHHhhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999987655


Q ss_pred             hhhcCCCCCCCCCCCcc----chhhhhcccCCCCCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013287          289 QAEALPGPAASNSIVPK----ASHLRRLSSNRSGSLVSSNLMDDNDVEDLEMLLEAYFMQLDGTRNKILSVREYIDDTED  364 (446)
Q Consensus       289 ~~~~~~~~~~~N~~~~~----~~~l~r~~s~~s~~~~~~~~~~~~~~eele~Lle~Y~~~~d~~~~~i~~l~~~i~~~~~  364 (446)
                      +         +|++ |+    +++..|..+.+..+  +..  .++++||+|||||+||+|+|++.++++++++|+|+||+
T Consensus       267 ~---------~~~~-~~sp~~~~~~~r~~~~~~~s--~~~--~~dd~eElEMLLEaYf~qiD~~~nk~~~Lre~IddTEd  332 (414)
T KOG2662|consen  267 S---------PESA-PTSPTIKAGISRAKSNRASS--TVR--GEDDVEELEMLLEAYFMQIDSTLNKLESLREYIDDTED  332 (414)
T ss_pred             c---------cccC-CCCccccCCccchhhcccch--hcc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            4         2221 11    11222322222111  221  37999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 013287          365 YVNIQLDNQRNELIQLQLILTIASFAIAANTLIAGIFGMNIPCQLYETDGIFEIFVGSTTTACVLLFLLVLGYARWKKLL  444 (446)
Q Consensus       365 ~i~i~Ld~~rN~l~~~~~~LTi~s~i~~p~t~IaGifGMN~~~~~e~~~~~f~~v~~~~~~~~~~i~~~~~~yfrrk~wl  444 (446)
                      +++|+||++||+++++++.||+.|++++.+++|||+||||+++.+|+.+|+|||++++++++|++++++.++|+|+||++
T Consensus       333 ~InI~LDs~RN~LiqleL~Lt~gT~~~s~~~~va~ifGMNl~~~l~~~~~~F~~vv~~~~~~~~~lf~~i~~~~k~krL~  412 (414)
T KOG2662|consen  333 IINIQLDSNRNELIQLELLLTIGTFCLSVFSVVAGIFGMNLPSSLEEDHYAFKWVVGITFTLCIVLFVVILGYAKLKRLL  412 (414)
T ss_pred             HHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhccCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CC
Q 013287          445 GT  446 (446)
Q Consensus       445 ~~  446 (446)
                      +.
T Consensus       413 ~~  414 (414)
T KOG2662|consen  413 GL  414 (414)
T ss_pred             CC
Confidence            74

>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA)	Back alignment and domain information

>PRK09546 zntB zinc transporter; Reviewed	Back alignment and domain information

>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional	Back alignment and domain information

>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]	Back alignment and domain information

>PRK09546 zntB zinc transporter; Reviewed	Back alignment and domain information

>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional	Back alignment and domain information

>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]	Back alignment and domain information

>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA)	Back alignment and domain information

>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans	Back alignment and domain information

>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function	Back alignment and domain information

>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG3850 consensus Predicted membrane protein [Function unknown]	Back alignment and domain information

>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology	Back alignment and domain information

>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function	Back alignment and domain information

>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		446
3rkg_A		261	Structural And Functional Characterization Of The Y		1e-05

>pdb|3RKG|A Chain A, Structural And Functional Characterization Of The Yeast Mg2+ Channel Mrs2 Length = 261

Back alignment and structure

Iteration: 1

Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 66/296 (22%), Positives = 113/296 (38%), Gaps = 74/296 (25%) Query: 83 SVIIERAGVPARDLR-ILGPVFSHSSNILAREKAMVVNLEFIKAIVTSQEVLLLDPLRQE 141 S + E + P RDLR I I+ + +V+NL IKA++ +V + D Sbjct: 39 SFLTEHSLFP-RDLRKIDNSSIDIIPTIMCKPNCIVINLLHIKALIERDKVYVFDTTNPS 97 Query: 142 VLPFVDQLRQQLPQRTVSNSNGAGPTEAQDNEMQVSTCGQWLPVPEAVEGFQCELPFEFQ 201 + L L + S N + Q+ +E + Sbjct: 98 AAAKLSVLMYDLESKLSSTKNNS----------------QF---------------YEHR 126 Query: 202 VLEIALEVVCTYLDSSVAELEKDAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKV 261 LE V + L++ + +L++L V+ L H+ +LT + + Sbjct: 127 ALESIFINVMSALETDFKLHSQICIQILNDLENEVNRLKLRHLLIKSKDLTLFYQKTLLI 186 Query: 262 RDEIEHLLDDNEDMAHLYLTRRRIQNQQAEALPGPAASNSIVPKAXXXXXXXXXXXXXXX 321 RD ++ LL++++D+A++YLT ++ PK Sbjct: 187 RDLLDELLENDDDLANMYLTVKK------------------SPK---------------- 212 Query: 322 XXXXMDDNDVEDLEMLLEAYFMQLDGTRNKILSVREYIDDTEDYVNIQLDNQRNEL 377 ++ DLEML+E Y+ Q D + S+ + I TE+ VNI LD RN L Sbjct: 213 -------DNFSDLEMLIETYYTQCDEYVQQSESLIQDIKSTEEIVNIILDANRNSL 261

PyMOL of 3rkg

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		446
3rkg_A		261	Magnesium transporter MRS2, mitochondrial; matrix	1e-62
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-07
2iub_A		363	CORA, divalent cation transport-related protein; m	3e-05

>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae} Length = 261	Back alignment and structure

 Score =  203 bits (516), Expect = 1e-62
 Identities = 63/315 (20%), Positives = 110/315 (34%), Gaps = 75/315 (23%)

Query: 66  WMRFDFTG--KSELVECDKSVIIERAGVPARDLRIL-GPVFSHSSNILAREKAMVVNLEF 122
              F+  G   S   +  K   +    +  RDLR +          I+ +   +V+NL  
Sbjct: 19  CTVFNSKGNIISMSEKFPKWSFLTEHSLFPRDLRKIDNSSIDIIPTIMCKPNCIVINLLH 78

Query: 123 IKAIVTSQEVLLLDPLRQEVLPFVDQLRQQLPQRTVSNSNGAGPTEAQDNEMQVSTCGQW 182
           IKA++   +V + D         +  L   L  +  S  N                    
Sbjct: 79  IKALIERDKVYVFDTTNPSAAAKLSVLMYDLESKLSSTKN-------------------- 118

Query: 183 LPVPEAVEGFQCELPFEFQVLEIALEVVCTYLDSSVAELEKDAYPVLDELARNVSTKNLE 242
                          +E + LE     V + L++      +    +L++L   V+   L 
Sbjct: 119 -----------NSQFYEHRALESIFINVMSALETDFKLHSQICIQILNDLENEVNRLKLR 167

Query: 243 HVRSLKSNLTRLLARVQKVRDEIEHLLDDNEDMAHLYLTRRRIQNQQAEALPGPAASNSI 302
           H+     +LT    +   +RD ++ LL++++D+A++YLT ++                  
Sbjct: 168 HLLIKSKDLTLFYQKTLLIRDLLDELLENDDDLANMYLTVKKSPKD-------------- 213

Query: 303 VPKASHLRRLSSNRSGSLVSSNLMDDNDVEDLEMLLEAYFMQLDGTRNKILSVREYIDDT 362
                                      +  DLEML+E Y+ Q D    +  S+ + I  T
Sbjct: 214 ---------------------------NFSDLEMLIETYYTQCDEYVQQSESLIQDIKST 246

Query: 363 EDYVNIQLDNQRNEL 377
           E+ VNI LD  RN L
Sbjct: 247 EEIVNIILDANRNSL 261

PyMOL of 3rkg

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A Length = 363	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		446
3rkg_A		261	Magnesium transporter MRS2, mitochondrial; matrix	100.0
2iub_A		363	CORA, divalent cation transport-related protein; m	100.0
4ev6_A		339	Magnesium transport protein CORA; membrane protein	100.0
4egw_A		280	Magnesium transport protein CORA; magnesium transp	99.79
3nvo_A		264	Zinc transport protein ZNTB; alpha-beta-alpha sand	99.6
3ck6_A		252	Putative membrane transport protein; APC91421.1, Z	99.55
2bbh_A		269	Divalent cation transport-related protein; transpo	99.38
2hn1_A		266	CORA, magnesium and cobalt transporter; integral m	99.34
4ev6_A		339	Magnesium transport protein CORA; membrane protein	95.92
2iub_A		363	CORA, divalent cation transport-related protein; m	94.91
1nfn_A		191	Apolipoprotein E3; lipid transport, heparin-bindin	82.73

>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}	Back alignment and structure

Probab=100.00  E-value=5.9e-51  Score=395.30  Aligned_cols=239  Identities=25%  Similarity=0.372  Sum_probs=219.7

Q ss_pred             ceEEEEEcCCCCeeEEe--echhhhHHHhCCChhhhhhhCCCC-CccceeEeecCeeEeeccceeeEEecCeEEeeCCCC
Q 013287           63 ARLWMRFDFTGKSELVE--CDKSVIIERAGVPARDLRILGPVF-SHSSNILAREKAMVVNLEFIKAIVTSQEVLLLDPLR  139 (446)
Q Consensus        63 ~~~W~~id~~g~~~~~e--~~k~~i~~~~~L~~RDLr~Ld~~~-~~~~~Il~Re~aIlvnle~IraII~~d~vl~f~~~~  139 (446)
                      ...|..||..|++..++  ++|++|++++||+|||||+|||.+ ++.|+|++|++||+||+++|||||++|+|++|++.+
T Consensus        16 ~~~ct~fD~~G~~~~~~~~~~K~~l~~~~~L~~RDLR~ld~~~~~~~PsIl~R~~aIlvnL~~irAII~~d~Vllfd~~~   95 (261)
T 3rkg_A           16 FISCTVFNSKGNIISMSEKFPKWSFLTEHSLFPRDLRKIDNSSIDIIPTIMCKPNCIVINLLHIKALIERDKVYVFDTTN   95 (261)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEHHHHHHHTTCCGGGGGGTSSCCSSCCCEEEECSSCEEEEETTEEEEECSSCEEEECCSC
T ss_pred             eEEEEEECCCCCEEEecccccHHHHHHHcCCChhhHHHhcccccCCCceEEecCCeEEEechhceEEEEcceEEEEcCCC
Confidence            67999999999999977  999999999999999999999974 689999999999999999999999999999999987


Q ss_pred             CCch----hhHHHHHHhcCCCCCCCCCCCCCCCcccchhhhhccCCCCCCCccccCcccccchHHHHHHHHHHHHHhhhh
Q 013287          140 QEVL----PFVDQLRQQLPQRTVSNSNGAGPTEAQDNEMQVSTCGQWLPVPEAVEGFQCELPFEFQVLEIALEVVCTYLD  215 (446)
Q Consensus       140 ~~~~----~f~~~L~~rl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPfEf~~LE~iL~~v~~~Le  215 (446)
                      +.+.    .|+..+..|+..+.                                   .+.+||||+|||+||.++|..|+
T Consensus        96 ~~~~~~~~~f~~~l~~~l~~~~-----------------------------------~~~lPFEfraLEa~L~~v~~~Le  140 (261)
T 3rkg_A           96 PSAAAKLSVLMYDLESKLSSTK-----------------------------------NNSQFYEHRALESIFINVMSALE  140 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCSS-----------------------------------CCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhHHHHHHHHHHHhccCC-----------------------------------CCCCChHHHHHHHHHHHHHHHHH
Confidence            6554    48888888886421                                   13689999999999999999999


Q ss_pred             hHHHHHHhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhcchhhhhhhhhhcCCC
Q 013287          216 SSVAELEKDAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLDDNEDMAHLYLTRRRIQNQQAEALPG  295 (446)
Q Consensus       216 ~~~~~Le~~~~~vld~L~~~v~~~~Le~lr~lK~~L~~l~~~v~~vRe~L~~lL~dd~dm~~m~Lt~~~~~~~~~~~~~~  295 (446)
                      +++..++..+.+++++|..++++..|++|+..++.|+.+.++++.+|++|+++|+||+||+.||||++..          
T Consensus       141 ~e~~~l~~~~~~~L~~L~~~i~~~~L~~Ll~~~k~L~~~~~kv~~vr~~leelLddDeDm~~myLT~k~~----------  210 (261)
T 3rkg_A          141 TDFKLHSQICIQILNDLENEVNRLKLRHLLIKSKDLTLFYQKTLLIRDLLDELLENDDDLANMYLTVKKS----------  210 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHTCCSSCCC----------
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhhccCCCC----------
Confidence            9999999999999999999999999999999999999999999999999999999999999999997631          


Q ss_pred             CCCCCCCCccchhhhhcccCCCCCccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013287          296 PAASNSIVPKASHLRRLSSNRSGSLVSSNLMDDNDVEDLEMLLEAYFMQLDGTRNKILSVREYIDDTEDYVNIQLDNQRN  375 (446)
Q Consensus       296 ~~~~N~~~~~~~~l~r~~s~~s~~~~~~~~~~~~~~eele~Lle~Y~~~~d~~~~~i~~l~~~i~~~~~~i~i~Ld~~rN  375 (446)
                                                     ..++|+|+|||+|+||+++|++.++++.+.+++++||+++++.||+.||
T Consensus       211 -------------------------------~~~d~eElEmLLE~Y~~q~d~~~~~~~~L~~~I~~TEe~i~i~LD~~RN  259 (261)
T 3rkg_A          211 -------------------------------PKDNFSDLEMLIETYYTQCDEYVQQSESLIQDIKSTEEIVNIILDANRN  259 (261)
T ss_dssp             -------------------------------TTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             -------------------------------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence                                           5679999999999999999999999999999999999999999999999


Q ss_pred             HH
Q 013287          376 EL  377 (446)
Q Consensus       376 ~l  377 (446)
                      ++
T Consensus       260 ~L  261 (261)
T 3rkg_A          260 SL  261 (261)
T ss_dssp             --
T ss_pred             CC
Confidence            85

PyMOL of 3rkg

>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A	Back alignment and structure

>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}	Back alignment and structure

>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}	Back alignment and structure

>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A	Back alignment and structure

>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*	Back alignment and structure

>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1	Back alignment and structure

>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}	Back alignment and structure

>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}	Back alignment and structure

>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A	Back alignment and structure

>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		446
d2iuba2		64	f.17.3.1 (A:286-349) Magnesium transport protein C	8e-05

>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]} Length = 64	Back information, alignment and structure


class: Membrane and cell surface proteins and peptides
fold: Transmembrane helix hairpin
superfamily: Magnesium transport protein CorA, transmembrane region
family: Magnesium transport protein CorA, transmembrane region
domain: Magnesium transport protein CorA
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.1 bits (89), Expect = 8e-05
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 375 NELIQLQLILTIASFAIAANTLIAGIFGMNIPCQLYETDGIFEIFVGSTTTACVLLFLLV 434
           NE+++   +LTI +      T IAGI+GMN    + E    +   V        ++ +++
Sbjct: 3   NEVMK---VLTIIATIFMPLTFIAGIYGMNFE-YMPELRWKWGYPV--VLAVMGVIAVIM 56

Query: 435 LGYARWKK 442
           + Y + KK
Sbjct: 57  VVYFKKKK 64

PyMOL of d2iuba2

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		446
d2iuba2		64	Magnesium transport protein CorA {Thermotoga marit	99.71
d2bbha1		232	Magnesium transport protein CorA, soluble domain {	99.53
d1lrza1		65	Methicillin resistance protein FemA probable tRNA-	85.9

>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Transmembrane helix hairpin
superfamily: Magnesium transport protein CorA, transmembrane region
family: Magnesium transport protein CorA, transmembrane region
domain: Magnesium transport protein CorA
species: Thermotoga maritima [TaxId: 2336]

Probab=99.71  E-value=1.6e-18  Score=131.68  Aligned_cols=63  Identities=22%  Similarity=0.287  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 013287          376 ELIQLQLILTIASFAIAANTLIAGIFGMNIPCQLY-ETDGIFEIFVGSTTTACVLLFLLVLGYARWKK  442 (446)
Q Consensus       376 ~l~~~~~~LTi~s~i~~p~t~IaGifGMN~~~~~e-~~~~~f~~v~~~~~~~~~~i~~~~~~yfrrk~  442 (446)
                      |+|++|++||++|++|+|+|+|||+||||++++|+ +++++||++++++++    +++++++||||||
T Consensus         1 r~N~~mk~lT~it~iflP~t~i~gifGMN~~~~P~~~~~~~~~~~~~~~~~----~~~~~~~~f~rkk   64 (64)
T d2iuba2           1 KTNEVMKVLTIIATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGV----IAVIMVVYFKKKK   64 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCC--------------CHHHHHHHHH----HHHHHHTTTTSCC
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCccHHHHHHHHHHHH----HHHHHHHHHhccC
Confidence            57889999999999999999999999999998777 999999999887654    4457789999987

PyMOL of d2iuba2

>d2bbha1 d.328.1.1 (A:13-244) Magnesium transport protein CorA, soluble domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure