Citrus Sinensis ID: 013303

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440------
Protein Sequence
MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYSKLEASGKPKRYTHIMDYPQLIEYTDWLAAQCNCQGYEEWRKQMAYSAFKNAFITRPGTYRDEWDDEHLVAEANKDFIKYTSNKSK
Secondary Structure (PSIPRED)
cccEEEEEcccHHHHHHHHHHHHccccEEEEEEccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccEEEcEEEEEEEEcccccEEEEEEEccccEEEEEEcEEEEccccccccccccccccccccccEEEEccccccccccccEEEEEcccccHHHHHHHHHHccccEEEEEEEccccccccccccccccccccccccccccEEEEcccEEEEccEEEEEEEEEEEccccccccEEEccccEEcccccccccccccccEEEEEEccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccEEEEcccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEcccHHHHHHHHHHHHccccEEEEEEcccccEEEEEccccccccccccccccccccHHHHHEEEccccHHccccccccccccccccccccccccHHHHHHHHHHHHHHccccHEEEEEEEEEEEEEcccccEEEEEEcccccEEEEEEEEEEEEccccccccccccccHccccccEEccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHEEEccccccccccccccccccccccccEEEcccccEEEEcccEEEEEEEEEEcccEEEccccccccEEEEccccccccHHccccccccccEEEEEcccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccEEEcccHHHHHHHHHHHHHHccccccHHHHHHHHHcHHHHHHHcHHHHccccccHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MFRHVAVIGAGAAGLVVGHELLREGHTVVVyekgeqvggswiytsetesdplgvdpnrypvhssLYKSLRVnlprelmgfqaypfvarnyegsvdlrrypghEEVLRYLQNFAREFGVDQVVRLHTEVLNARLvesnkwkvksrkkddvveEETFDAVVVCnghfsvprlaqvpgidswpgkqmhshnyripnpfqDQVVILIGHYASGLDIKRDLAGFAKEVHIasrsvadethekqpgydnmWLHSMVERAnedgtvvfrngrvvSADVIMHCtgykynypfletngivtvddnrvgplykhvfppvlapglsfvgipqkvipfpffELQSKWIASVLSgrivlpsqdeMMEDVKAFYSKLeasgkpkrythimdypqlIEYTDWLAAQCNCQGYEEWRKQMAYSAFKNAfitrpgtyrdewddeHLVAEANKDFIKYTSNKSK
Flexible Loop (DISEMBL)
MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTsetesdplgvdpNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLnarlvesnkwkvksrkkddvveEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIasrsvadethekqPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYSKleasgkpkrYTHIMDYPQLIEYTDWLAAQCNCQGYEEWRKQMAYSAFKNAFITRPGTYRDEWDDEHLVAEankdfikytsnksk
Low Complexity Region (SEG)
MFRHvavigagaaglvvgHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYSKLEASGKPKRYTHIMDYPQLIEYTDWLAAQCNCQGYEEWRKQMAYSAFKNAFITRPGTYRDEWDDEHLVAEANKDFIKYTSNKSK
Disordered region (IsUnstruct)
***HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSE*****LGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR***********GYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYSKLEASGKPKRYTHIMDYPQLIEYTDWLAAQCNCQGYEEWRKQMAYSAFKNAFITRPGTYRDEWDDEHLVAEANKDFIK*******
Disordered Region (DISOPRED)
*FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYSKLEASGKPKRYTHIMDYPQLIEYTDWLAAQCNCQGYEEWRKQMAYSAFKNAFITRPGTYRDEWDDEHLVAEANKDFI*YT*****
Disordered Region (DISEMBL)
MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK************EEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYSKLEASGKPKRYTHIMDYPQLIEYTDWLAAQCNCQGYEEWRKQMAYSAFKNAFITRPGTYRDEWDDEHLVAEANKDFIKYTSNKSK
Disordered Region (DISPRO)
*FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYSKLEASGKPKRYTHIMDYPQLIEYTDWLAAQCNCQGYEEWRKQMAYSAFKNAFITRPGTYRDEWDDEHLVAEANKDFIKYTS****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYSKLEASGKPKRYTHIMDYPQLIEYTDWLAAQCNCQGYEEWRKQMAYSAFKNAFITRPGTYRDEWDDEHLVAEANKDFIKYTSNKSK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	446	2.2.26 [Sep-21-2011]
Q9FWW9	465	Flavin-containing monooxy	yes	no	0.984	0.944	0.621	1e-161
Q9SXD5	450	Flavin-containing monooxy	no	no	0.970	0.962	0.610	1e-157
Q9C8U0	450	Flavin-containing monooxy	no	no	0.970	0.962	0.608	1e-157
Q94BV5	452	Flavin-containing monooxy	no	no	0.977	0.964	0.613	1e-152
Q9SXD9	464	Flavin-containing monooxy	no	no	0.979	0.941	0.598	1e-147
A8MRX0	459	Flavin-containing monooxy	no	no	0.970	0.943	0.583	1e-147
Q9SXE1	462	Flavin-containing monooxy	no	no	0.970	0.937	0.545	1e-146
Q9SS04	459	Flavin-containing monooxy	no	no	0.973	0.945	0.554	1e-146
Q9FWW6	468	Flavin-containing monooxy	no	no	0.977	0.931	0.548	1e-146
Q93Y23	461	Flavin-containing monooxy	no	no	0.973	0.941	0.570	1e-141

>sp|Q9FWW9|GSXL2_ARATH Flavin-containing monooxygenase FMO GS-OX-like 2 OS=Arabidopsis thaliana GN=At1g12200 PE=2 SV=1

 Score =  570 bits (1468), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 277/446 (62%), Positives = 342/446 (76%), Gaps = 7/446 (1%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
           RHVAVIGAGAAGLV   EL REGH+VVV E+G Q+GG W YTS+ E DPL +DP R  VH
Sbjct: 12  RHVAVIGAGAAGLVAARELRREGHSVVVLERGSQIGGVWAYTSQVEPDPLSLDPTRPVVH 71

Query: 63  SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
           SSLY+SLR N+PRE MGF  +PF  R ++GS D RR+P H EVL YL++FA+EF ++++V
Sbjct: 72  SSLYRSLRTNIPRECMGFTDFPFATRPHDGSRDPRRHPAHTEVLAYLRDFAKEFDIEEMV 131

Query: 123 RLHTEVLNARLV-----ESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGID 177
           R  TEV+ A  V     E  KW+V+SR  D VV+E  +DAVVVCNGH++ PR A + GID
Sbjct: 132 RFETEVVKAEQVAAEGEERGKWRVESRSSDGVVDE-IYDAVVVCNGHYTEPRHALITGID 190

Query: 178 SWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEK 237
           SWPGKQ+HSHNYR+P+ F+DQVVI+IG  ASG+DI RD+A  AKEVH++SRS + +T+EK
Sbjct: 191 SWPGKQIHSHNYRVPDQFKDQVVIVIGSSASGVDICRDIAQVAKEVHVSSRSTSPDTYEK 250

Query: 238 QPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNR 297
             GY+N+WLHS ++ A EDG+VVF NG+ + AD IMHCTGYKY +PFL+T G VTVDDNR
Sbjct: 251 LTGYENLWLHSTIQIAREDGSVVFENGKTIYADTIMHCTGYKYYFPFLDTKGEVTVDDNR 310

Query: 298 VGPLYKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVK 357
           VGPLYKHVFPP LAP LSF+G+P ++ PFP FELQSKW+A+VLSGR+ LPSQDEMMED K
Sbjct: 311 VGPLYKHVFPPALAPSLSFIGLPWQITPFPMFELQSKWVAAVLSGRVSLPSQDEMMEDTK 370

Query: 358 AFYSKLEASGKPKRYTHIMDYPQLIEYTDWLAAQCNCQGYEEWRKQMAYSAFKNAFITRP 417
           AFY KLEASG PKRYTH+M      EY +WLA QC     E+WR+QM Y  FK  +  + 
Sbjct: 371 AFYDKLEASGIPKRYTHLMPDDSQFEYDNWLADQCEYPRIEKWREQMFYIGFKRIY-AQS 429

Query: 418 GTYRDEWDDEHLVAEANKDFIKYTSN 443
            TYRD WDD+HL+ EA  DF+K+ S+
Sbjct: 430 STYRDNWDDDHLIVEAYDDFVKFMSS 455

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 8EC: .EC: -EC: .EC: -

>sp|Q9SXD5|GSXL3_ARATH Flavin-containing monooxygenase FMO GS-OX-like 3 OS=Arabidopsis thaliana GN=At1g62620 PE=2 SV=2

 Score =  555 bits (1431), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 271/444 (61%), Positives = 336/444 (75%), Gaps = 11/444 (2%)

Query: 4   HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHS 63
           HVAVIGAG AGLV   EL REGH+VVV+EK +QVGG+WIYT E ESDPL VDP R  VHS
Sbjct: 12  HVAVIGAGPAGLVAARELRREGHSVVVFEKQKQVGGTWIYTDEVESDPLSVDPTRSVVHS 71

Query: 64  SLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVR 123
           S+Y+SLR+N  RE  G++ +PFV R+   S D RR+P H EVL YL++FA+EFG++++VR
Sbjct: 72  SVYRSLRINGTRECTGYRDFPFVVRS-GVSRDPRRFPSHGEVLAYLKDFAKEFGIEEMVR 130

Query: 124 LHTEVLNARLVES---NKWKVKSRKKDDVVE-EETFDAVVVCNGHFSVPRLAQVPGIDSW 179
             TEV+           KW+++S +K+  V  +E +DAVVVCNGH+  PRLAQ+PGI SW
Sbjct: 131 FETEVVKVSPAAEEGIGKWRIESTEKEKKVRRDEIYDAVVVCNGHYVEPRLAQIPGISSW 190

Query: 180 PGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQP 239
           PGK+MHSHNYRIP PF+D+VV+LIG+ +S  DI RD+A  AKEVH+A RS   +T  KQ 
Sbjct: 191 PGKEMHSHNYRIPEPFRDKVVVLIGNSSSAEDISRDIARVAKEVHVACRSNPADTFIKQT 250

Query: 240 GYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVG 299
           GY+N+W HSM+E  +EDG+VV++NG+ +S D+IMHCTGYKY++PFL+TNGIVTVDDNRVG
Sbjct: 251 GYNNLWTHSMIESVHEDGSVVYQNGKTISVDIIMHCTGYKYHFPFLDTNGIVTVDDNRVG 310

Query: 300 PLYKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAF 359
           PLYK VFPP  AP LSF+GIP +V+PFP FELQSKWIA VLSGRI LPS+++MM ++K F
Sbjct: 311 PLYKDVFPPAFAPWLSFIGIPWQVLPFPMFELQSKWIAGVLSGRIPLPSKEDMMIEIKTF 370

Query: 360 YSKLEASGKPKRYTHIMDYPQLIEYTDWLAAQCNCQGYEEWRKQM--AYSAFKNAFITRP 417
           YS LE  G PKRYTH M   Q  EY +WLA+QC C   EEWRK+M  A    K A    P
Sbjct: 371 YSTLEVQGIPKRYTHRMGNTQF-EYYNWLASQCGCSETEEWRKEMCLANGVRKEA---HP 426

Query: 418 GTYRDEWDDEHLVAEANKDFIKYT 441
            TYRDEWDD HLV+EA +DF  Y+
Sbjct: 427 ETYRDEWDDHHLVSEAYQDFSLYS 450

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q9C8U0|GSXL5_ARATH Flavin-containing monooxygenase FMO GS-OX-like 5 OS=Arabidopsis thaliana GN=At1g63370 PE=2 SV=2

 Score =  555 bits (1430), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 270/444 (60%), Positives = 335/444 (75%), Gaps = 11/444 (2%)

Query: 4   HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHS 63
           HVAVIGAG AGLV   EL REGH+VVV+EK +QVGG+WIYT E ESDPL VDP R  VHS
Sbjct: 12  HVAVIGAGPAGLVAARELRREGHSVVVFEKQKQVGGTWIYTDEVESDPLSVDPTRSVVHS 71

Query: 64  SLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVR 123
           S+Y+SLR+N  RE  G++ +PFV R+   S D RR+P H EVL YL++FA+EFG++++VR
Sbjct: 72  SVYRSLRINGTRECTGYRDFPFVVRS-GVSRDRRRFPSHGEVLAYLKDFAKEFGIEEMVR 130

Query: 124 LHTEVLNARLVES---NKWKVKSRKKDDVVE-EETFDAVVVCNGHFSVPRLAQVPGIDSW 179
             TEV+           KW+++S +K+  V  +E +DAVVVCNGH+  PRLAQ+PGI SW
Sbjct: 131 FETEVVKVSPAAEEGIGKWRIESTEKEKKVRRDEIYDAVVVCNGHYVEPRLAQIPGISSW 190

Query: 180 PGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQP 239
           PGK+MHSHNYRIP PF+D+V +LIG+ +S  DI RD+A  AKEVH+A RS   +T  KQ 
Sbjct: 191 PGKEMHSHNYRIPEPFRDKVAVLIGNSSSAEDISRDIARVAKEVHVACRSNPADTFIKQT 250

Query: 240 GYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVG 299
           GY+N+W HSM+E  +EDG+VV++NG+ +S D+IMHCTGYKY++PFL+TNGIVTVDDNRVG
Sbjct: 251 GYNNLWTHSMIESVHEDGSVVYQNGKTISVDIIMHCTGYKYHFPFLDTNGIVTVDDNRVG 310

Query: 300 PLYKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAF 359
           PLYK VFPP  AP LSF+GIP +V+PFP FELQSKWIA VLSGRI LPS+++MM ++K F
Sbjct: 311 PLYKDVFPPAFAPWLSFIGIPWQVLPFPMFELQSKWIAGVLSGRIPLPSKEDMMIEIKTF 370

Query: 360 YSKLEASGKPKRYTHIMDYPQLIEYTDWLAAQCNCQGYEEWRKQM--AYSAFKNAFITRP 417
           YS LE  G PKRYTH M   Q  EY +WLA+QC C   EEWRK+M  A    K A    P
Sbjct: 371 YSTLEVQGIPKRYTHRMGNTQF-EYDNWLASQCGCSETEEWRKEMCLANGVRKEA---HP 426

Query: 418 GTYRDEWDDEHLVAEANKDFIKYT 441
            TYRDEWDD HLV+EA +DF  Y+
Sbjct: 427 ETYRDEWDDHHLVSEAYQDFSLYS 450

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q94BV5|GSXL4_ARATH Flavin-containing monooxygenase FMO GS-OX-like 4 OS=Arabidopsis thaliana GN=At1g62600 PE=2 SV=1

 Score =  538 bits (1386), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 272/443 (61%), Positives = 334/443 (75%), Gaps = 7/443 (1%)

Query: 4   HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHS 63
           HVAVIGAGAAGLV   EL REGH+VVV+E+ +QVGG+WIYT   E DPL VDP R  VHS
Sbjct: 12  HVAVIGAGAAGLVAARELRREGHSVVVFERQKQVGGTWIYTDHIEPDPLSVDPTRSVVHS 71

Query: 64  SLYKSLRVNLPRELMGFQAYPFVAR-NYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
           S+Y SLR NLPRE MG++ +PFV R +   S D RR+P H EVL YLQ+FA+EF +++++
Sbjct: 72  SVYGSLRTNLPRECMGYRDFPFVIRSDVSESRDPRRFPSHGEVLAYLQDFAKEFAIEEMI 131

Query: 123 RLHTEVLN---ARLVESNKWKVKSRKKDD-VVEEETFDAVVVCNGHFSVPRLAQVPGIDS 178
           R  T V+    A    S KW+++S +K+  V+ +E +DAVVVCNGH+  PR A++PGI S
Sbjct: 132 RFDTAVVKVAPAAEEGSGKWRIESTEKEKKVLRDEIYDAVVVCNGHYIEPRHAEIPGISS 191

Query: 179 WPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQ 238
           WPGK+MHSHNYRIP PF+DQVV+LIG+ AS  DI RD+A  AKEVH+A RS A +T+ ++
Sbjct: 192 WPGKEMHSHNYRIPEPFRDQVVVLIGNSASADDISRDIARVAKEVHVACRSNAADTYIER 251

Query: 239 PGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRV 298
           PGY N+W+HSM+E  +EDG+VVF+NG+ +S DVIMHCTGYKY++PFLETNG VTVDDNRV
Sbjct: 252 PGYSNLWMHSMIESVHEDGSVVFQNGKTISVDVIMHCTGYKYHFPFLETNGNVTVDDNRV 311

Query: 299 GPLYKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKA 358
           GPLYK VF P  AP LSFVGIP KV+PFP FELQSKWIA VLSGRI LPS+++MM ++K 
Sbjct: 312 GPLYKDVFSPAFAPWLSFVGIPWKVVPFPMFELQSKWIAGVLSGRIPLPSKEDMMMEIKT 371

Query: 359 FYSKLEASGKPKRYTHIMDYPQLIEYTDWLAAQCNCQGYEEWRKQMAYSAFKNAFITRPG 418
            YS L+A G  KRYTH M   Q  EY  WLA+QC C   EEWRK+M Y A        P 
Sbjct: 372 LYSTLDAQGIAKRYTHQMGISQF-EYNSWLASQCGCSETEEWRKEM-YFATGVKKRAHPE 429

Query: 419 TYRDEWDDEHLVAEANKDFIKYT 441
           TYRDEWDD HLV++A +DF  YT
Sbjct: 430 TYRDEWDDHHLVSQAYQDFSLYT 452

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q9SXD9|GSXL7_ARATH Flavin-containing monooxygenase FMO GS-OX-like 7 OS=Arabidopsis thaliana GN=At1g62580 PE=2 SV=2

 Score =  523 bits (1346), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 265/443 (59%), Positives = 332/443 (74%), Gaps = 6/443 (1%)

Query: 4   HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHS 63
           HVAVIGAGAAGLV   EL REGH+VVV+E+G  +GG W YT   E DPL +DP R  +HS
Sbjct: 13  HVAVIGAGAAGLVAARELRREGHSVVVFERGNHIGGVWAYTPNVEPDPLSIDPTRPVIHS 72

Query: 64  SLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVR 123
           SLY SLR  +P+E MGF  +PF  R   GS D RR+PGH EVL YL++F REF +++++R
Sbjct: 73  SLYSSLRTIIPQECMGFTDFPFSTRLENGSRDPRRHPGHSEVLAYLRDFVREFKIEEMIR 132

Query: 124 LHTEVLNARLVESN--KWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPG 181
             TEV+       N  KW+VKSR   D+  +E +DAVVVCNGH++ PR A +PGID+WPG
Sbjct: 133 FETEVVRVEQAGENPKKWRVKSRNFGDI-SDEIYDAVVVCNGHYTEPRHALIPGIDTWPG 191

Query: 182 KQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGY 241
           KQ+HSHNYR+P   +DQVV++IG   SG+DI RD+A   KEVHI+SRS   ET+EK PGY
Sbjct: 192 KQIHSHNYRVPEQVKDQVVVVIGSSVSGVDISRDIANVTKEVHISSRSTKPETYEKLPGY 251

Query: 242 DNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPL 301
           DN+WLHS +E   EDG+VVF+NG+ V AD IMHCTGYKY +PFL+T G VTV+DNRVGPL
Sbjct: 252 DNLWLHSNIETVREDGSVVFKNGKTVYADTIMHCTGYKYYFPFLDTKGEVTVEDNRVGPL 311

Query: 302 YKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYS 361
           YKHVFPP L+PGLSF+G+P +VIPFP FELQSKW+A+VL+GR+ LPSQ+E MED K FY 
Sbjct: 312 YKHVFPPALSPGLSFIGLPWQVIPFPMFELQSKWVAAVLAGRVSLPSQEE-MEDTKMFYL 370

Query: 362 KLEASGKPKRYTHIM-DYPQLIEYTDWLAAQCNCQGYEEWRKQMAYSAFKNAFITRPGTY 420
           KLEAS  PKRYTH+M +      Y +WLA QC+    E+WR+QM Y  FK    ++  TY
Sbjct: 371 KLEASCIPKRYTHLMAELDSQFVYNNWLADQCDYPRIEKWREQMFYKVFKR-IQSQASTY 429

Query: 421 RDEWDDEHLVAEANKDFIKYTSN 443
           +D+WDD+HL+AEA +DF+K+ SN
Sbjct: 430 KDDWDDDHLIAEAYEDFVKFPSN 452

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|A8MRX0|GSOX5_ARATH Flavin-containing monooxygenase FMO GS-OX5 OS=Arabidopsis thaliana GN=FMOGS-OX5 PE=2 SV=2

 Score =  521 bits (1341), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 255/437 (58%), Positives = 333/437 (76%), Gaps = 4/437 (0%)

Query: 4   HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHS 63
           +VAVIGAGAAGLV   EL RE HTVVV+E+  +VGG W+YT  +E DPL +DPNR  VHS
Sbjct: 12  NVAVIGAGAAGLVAARELRRENHTVVVFERDSKVGGLWVYTPNSEPDPLSLDPNRTIVHS 71

Query: 64  SLYKSLRVNLPRELMGFQAYPFVARNYEG-SVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
           S+Y SLR NLPRE MG++ +PFV R  +  S D RRYP H EVL YL++FAREF + ++V
Sbjct: 72  SVYDSLRTNLPRECMGYRDFPFVPRPEDDESRDSRRYPSHREVLAYLEDFAREFKLVEMV 131

Query: 123 RLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGK 182
           R  TEV+     E  KW+V+S+  D + ++E FDAVVVCNGH++ PR+A VPGIDSWPGK
Sbjct: 132 RFKTEVVLVE-PEDKKWRVQSKNSDGISKDEIFDAVVVCNGHYTEPRVAHVPGIDSWPGK 190

Query: 183 QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYD 242
           Q+HSHNYR+P+ F+DQVV++IG++ASG DI RD+ G AKEVHIASRS   +T+ K PG +
Sbjct: 191 QIHSHNYRVPDQFKDQVVVVIGNFASGADISRDITGVAKEVHIASRSNPSKTYSKLPGSN 250

Query: 243 NMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLY 302
           N+WLHSM+E  +EDGT+VF+NG+VV AD I+HCTGYKY++PFL TNG +TV+DN VGPLY
Sbjct: 251 NLWLHSMIESVHEDGTIVFQNGKVVQADTIVHCTGYKYHFPFLNTNGYITVEDNCVGPLY 310

Query: 303 KHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYSK 362
           +HVFPP LAPGLSF+G+P   + F  FELQSKW+A+ LSGR+ LPS+++MMEDV A+Y+K
Sbjct: 311 EHVFPPALAPGLSFIGLPWMTLQFFMFELQSKWVAAALSGRVTLPSEEKMMEDVTAYYAK 370

Query: 363 LEASGKPKRYTHIMDYPQLIEYTDWLAAQCNCQGYEEWRKQMAYSAFKNAFITRPGTYRD 422
            EA G+PKRYTH +   Q ++Y +W+A Q      E+WR Q     +     T+  T+RD
Sbjct: 371 REAFGQPKRYTHRLGGGQ-VDYLNWIAEQIGAPPGEQWRYQEINGGYYR-LATQSDTFRD 428

Query: 423 EWDDEHLVAEANKDFIK 439
           +WDD+HL+ EA +DF++
Sbjct: 429 KWDDDHLIVEAYEDFLR 445

Catalyzes the conversion of methylthioalkyl glucosinolates into methylsulfinylalkyl glucosinolates. Specific for 8-methylthiooctyl (8-MTO) glucosinolates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q9SXE1|GSOX3_ARATH Flavin-containing monooxygenase FMO GS-OX3 OS=Arabidopsis thaliana GN=FMOGS-OX3 PE=2 SV=1

 Score =  520 bits (1338), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 238/436 (54%), Positives = 327/436 (75%), Gaps = 3/436 (0%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
           +HVAVIGAG AGL+   EL REGH+VVV+E+ +QVGG W+YT +++SDPL +DP R  VH
Sbjct: 11  KHVAVIGAGPAGLITSRELRREGHSVVVFEREKQVGGLWVYTPKSDSDPLSLDPTRSKVH 70

Query: 63  SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
           SS+Y+SLR N+PRE MG + +PF+ R  + S D RRYP H EVL Y+Q+FAREF +++++
Sbjct: 71  SSIYESLRTNVPRESMGVRDFPFLPRFDDESRDARRYPNHREVLAYIQDFAREFKIEEMI 130

Query: 123 RLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGK 182
           R  TEV+    V++  W+V+S+     +E+E +DAVVVCNGH++ P +A +PGI SWPGK
Sbjct: 131 RFETEVVRVEPVDNGNWRVQSKNSGGFLEDEIYDAVVVCNGHYTEPNIAHIPGIKSWPGK 190

Query: 183 QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEK-QPGY 241
           Q+HSHNYR+P+PF+++VV++IG++ASG DI RD+A  AKEVHIASR+    T+EK     
Sbjct: 191 QIHSHNYRVPDPFENEVVVVIGNFASGADISRDIAKVAKEVHIASRAREPHTYEKISVPQ 250

Query: 242 DNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPL 301
           +N+W+HS ++  +EDG++VF+NG+V+ AD I++CTGYKYN+PFLETNG + +D+ RV PL
Sbjct: 251 NNLWMHSEIDTTHEDGSIVFKNGKVIFADSIVYCTGYKYNFPFLETNGYLRIDEKRVEPL 310

Query: 302 YKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYS 361
           YKHVFPP LAPGL+FVG+P   I F  FE+QSKW+A+VLSGR+ LPS D+MMED+ A+Y+
Sbjct: 311 YKHVFPPALAPGLAFVGLPAMGIVFVMFEIQSKWVAAVLSGRVTLPSTDKMMEDINAWYA 370

Query: 362 KLEASGKPKRYTHIMDYPQLIEYTDWLAAQCNCQGYEEWRKQMAYSAFKNAFITRPGTYR 421
            L+A G PKR+TH +   Q  EY +W+A +  C+  E WR Q     +    +  P TYR
Sbjct: 371 SLDALGIPKRHTHTIGRIQS-EYLNWVAKESGCELVERWRGQEVDGGYLR-LVAHPETYR 428

Query: 422 DEWDDEHLVAEANKDF 437
           DEWDD+ L+ EA  DF
Sbjct: 429 DEWDDDELIEEAYNDF 444

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates. Prefers probably short-chain methylthioalkyl glucosinolates in cv. Landsberg erecta.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q9SS04|GSOX1_ARATH Flavin-containing monooxygenase FMO GS-OX1 OS=Arabidopsis thaliana GN=FMOGS-OX1 PE=2 SV=1

 Score =  518 bits (1335), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 243/438 (55%), Positives = 325/438 (74%), Gaps = 4/438 (0%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
           +HVAVIGAGAAGLV   EL REGHTVVV+++ +QVGG W Y+S+ +SDPL +D  R  VH
Sbjct: 11  KHVAVIGAGAAGLVTARELRREGHTVVVFDREKQVGGLWNYSSKADSDPLSLDTTRTIVH 70

Query: 63  SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
           +S+Y+SLR NLPRE MGF  +PFV R ++ S D RRYP H EVL YLQ+FAREF ++++V
Sbjct: 71  TSIYESLRTNLPRECMGFTDFPFVPRIHDISRDSRRYPSHREVLAYLQDFAREFKIEEMV 130

Query: 123 RLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGK 182
           R  TEV+    V + KW V+S+        E FDAVVVC+GHF+ P +A +PGI SWPGK
Sbjct: 131 RFETEVVCVEPV-NGKWSVRSKNSVGFAAHEIFDAVVVCSGHFTEPNVAHIPGIKSWPGK 189

Query: 183 QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQP-GY 241
           Q+HSHNYR+P PF ++VV++IG+YASG DI RD+A  AKEVHIASR+   +T++K P   
Sbjct: 190 QIHSHNYRVPGPFNNEVVVVIGNYASGADISRDIAKVAKEVHIASRASESDTYQKLPVPQ 249

Query: 242 DNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPL 301
           +N+W+HS ++ A++DG+++F+NG+VV AD I+HCTGYKY +PFLETNG + +++NRV PL
Sbjct: 250 NNLWVHSEIDFAHQDGSILFKNGKVVYADTIVHCTGYKYYFPFLETNGYININENRVEPL 309

Query: 302 YKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYS 361
           YKHVF P LAP LSF+G+P   I F  FE+QSKW+A+VLSGR++LPSQD+MMED+  +Y+
Sbjct: 310 YKHVFLPALAPSLSFIGLPGMAIQFVMFEIQSKWVAAVLSGRVILPSQDKMMEDIIEWYA 369

Query: 362 KLEASGKPKRYTHIMDYPQLIEYTDWLAAQCNCQGYEEWRKQMAYSAFKNAFITRPGTYR 421
            L+  G PKR+TH +      EY +W+A +C+C   E WR Q     F+   ++ P  YR
Sbjct: 370 TLDVLGIPKRHTHKLGKISC-EYLNWIAEECHCSPVENWRIQEVERGFQR-MVSHPEIYR 427

Query: 422 DEWDDEHLVAEANKDFIK 439
           DEWDD+ L+ EA KDF +
Sbjct: 428 DEWDDDDLMEEAYKDFAR 445

Catalyzes the conversion of methylthioalkyl glucosinolates into methylsulfinylalkyl glucosinolates. Able to S-oxygenate both desulfo- and intact 4-methylthiobutyl glucosinolates, but no activity with methionine, dihomomethionine or 5-methylthiopentaldoxime.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q9FWW6|GSXL1_ARATH Flavin-containing monooxygenase FMO GS-OX-like 1 OS=Arabidopsis thaliana GN=At1g12160 PE=2 SV=1

 Score =  518 bits (1333), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 253/461 (54%), Positives = 327/461 (70%), Gaps = 25/461 (5%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
           RHVAVIG GAAGLV   EL REGHTV+ +E+ + VGG W+YT   +SD + VDP+R  VH
Sbjct: 10  RHVAVIGLGAAGLVAVRELRREGHTVIGFEREKHVGGLWVYTDRVDSDSVSVDPDRTIVH 69

Query: 63  SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
           SS+Y+SLR NLPRE MG+  +PFV R+ +G  D RRYP H EVL YLQ+FA+EF ++ ++
Sbjct: 70  SSIYQSLRTNLPRECMGYSDFPFVTRSSDG--DPRRYPDHREVLMYLQDFAKEFKIEDMI 127

Query: 123 RLHTEVLNARLVESN--KWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWP 180
           R  TEVL       N  KW+V+ +  + V  EE FDAVVVCNGHF+ PRLA +PGI+SWP
Sbjct: 128 RFETEVLCVEPSPENNRKWRVQFKSSNGVSGEEIFDAVVVCNGHFTEPRLAHIPGIESWP 187

Query: 181 GKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPG 240
           GKQ+HSHNYRIP+PF+D+VVI+IG  ASG DI  D+A  AKEVHI+S+ VA +++     
Sbjct: 188 GKQIHSHNYRIPDPFKDEVVIVIGSQASGNDISTDIATIAKEVHISSKMVASDSYG---C 244

Query: 241 YDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGP 300
           YDN+ +H  + RA EDG+VVFRNG+VV AD I+HCTGYKY++PFL+T+G VTV+DNRVGP
Sbjct: 245 YDNLRIHPTIYRAREDGSVVFRNGKVVFADAIVHCTGYKYHFPFLKTSGYVTVEDNRVGP 304

Query: 301 LYKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFY 360
           LYKHVFPP LAPG+SF+G+P   + F  FE+QSKW+ASVLSGR+ LP++D+MME+  AFY
Sbjct: 305 LYKHVFPPALAPGISFIGLPFMGLQFFMFEIQSKWVASVLSGRVKLPAEDKMMEEAVAFY 364

Query: 361 SKLEASGKPKRYTHIMDYPQ-----------------LIEYTDWLAAQCNCQGYEEWRKQ 403
           SKLE  G PKRYTH +  P+                   +Y +W+A QC C   E WR++
Sbjct: 365 SKLEDLGIPKRYTHFLTDPRGNPMLGTFKPEDAVVISQSDYFNWIAKQCGCTSIERWRER 424

Query: 404 MAYSAFKNAFITRPGTYRDEWDDEHLVAEANKDFIKYTSNK 444
           +   A K  F     +YRD WDD+ L+ E  ++F K   N+
Sbjct: 425 LYNVAIKKVFFG-GDSYRDRWDDDQLIEEVYREFAKLKPNQ 464

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q93Y23|GSOX4_ARATH Flavin-containing monooxygenase FMO GS-OX4 OS=Arabidopsis thaliana GN=FMOGS-OX4 PE=2 SV=1

 Score =  503 bits (1294), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 250/438 (57%), Positives = 324/438 (73%), Gaps = 4/438 (0%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
           +HVAVIGAGAAGLV   EL REGHTVVV ++ +QVGG W+YT ETESD LG+DP R  VH
Sbjct: 11  QHVAVIGAGAAGLVAARELRREGHTVVVLDREKQVGGLWVYTPETESDELGLDPTRPIVH 70

Query: 63  SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
           SS+YKSLR NLPRE MG++ +PFV R  + S D RRYP H EVL YLQ+FA EF +++++
Sbjct: 71  SSVYKSLRTNLPRECMGYKDFPFVPRGDDPSRDSRRYPSHREVLAYLQDFATEFNIEEMI 130

Query: 123 RLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGK 182
           R  TEVL    V + KW+V+S+       +E +DAVV+C GHF+ P +AQ+PGI+SWPG+
Sbjct: 131 RFETEVLRVEPV-NGKWRVQSKTGGGFSNDEIYDAVVMCCGHFAEPNIAQIPGIESWPGR 189

Query: 183 QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQP-GY 241
           Q HSH+YR+P+PF+D+VV++IG++ASG DI RD++  AKEVHIASR+    T EK+P   
Sbjct: 190 QTHSHSYRVPDPFKDEVVVVIGNFASGADISRDISKVAKEVHIASRASKSNTFEKRPVPN 249

Query: 242 DNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPL 301
           +N+W+HS ++ A+EDGT+VF+NG+VV AD I+HCTGYKY +PFLETN  + VDDNRV PL
Sbjct: 250 NNLWMHSEIDTAHEDGTIVFKNGKVVHADTIVHCTGYKYYFPFLETNNYMRVDDNRVEPL 309

Query: 302 YKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYS 361
           YKH+FPP LAPGLSF+G+P   + F  FE+QSKW+A+VLSGR+ LPS DEMM+D+K  Y 
Sbjct: 310 YKHIFPPALAPGLSFIGLPAMGLQFYMFEVQSKWVAAVLSGRVTLPSVDEMMDDLKLSYE 369

Query: 362 KLEASGKPKRYTHIMDYPQLIEYTDWLAAQCNCQGYEEWRKQMAYSAFKNAFITRPGTYR 421
             EA G PKRYTH +   Q  EY DW+A  C     E WR Q     ++     +P T+R
Sbjct: 370 TQEALGIPKRYTHKLGKSQ-CEYLDWIADLCGFPHVEHWRDQEVTRGYQR-LGNQPETFR 427

Query: 422 DEWDDEHLVAEANKDFIK 439
           DEWDD+ L+ EA +DF +
Sbjct: 428 DEWDDDDLMEEAYEDFAR 445

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	446
224125168	459	predicted protein [Populus trichocarpa]	0.977	0.949	0.647	1e-169
255577823	423	dimethylaniline monooxygenase, putative	0.921	0.971	0.667	1e-162
224123136	464	predicted protein [Populus trichocarpa]	0.984	0.946	0.629	1e-160
297844078	465	flavin-containing monooxygenase family p	0.984	0.944	0.625	1e-160
15221248	465	dimethylaniline monooxygenase (N-oxide f	0.984	0.944	0.621	1e-160
255577829	510	dimethylaniline monooxygenase, putative	0.984	0.860	0.582	1e-159
30696735	450	flavin-containing monooxygenase-like pro	0.970	0.962	0.610	1e-155
15222405	450	flavin-containing monooxygenase-like pro	0.970	0.962	0.608	1e-155
224125164	452	predicted protein [Populus trichocarpa]	0.975	0.962	0.611	1e-155
297840265	450	flavin-containing monooxygenase family p	0.964	0.955	0.612	1e-154

>gi|224125168|ref|XP_002329910.1| predicted protein [Populus trichocarpa] gi|222871147|gb|EEF08278.1| predicted protein [Populus trichocarpa]

 Score =  599 bits (1545), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 292/451 (64%), Positives = 350/451 (77%), Gaps = 15/451 (3%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
           RHVAVIGAGAAGLV   EL REGH VVV+E+  QVGG+W+Y    E DPL +DPNR  +H
Sbjct: 12  RHVAVIGAGAAGLVSARELRREGHDVVVFERDNQVGGTWVYNPRVEPDPLSLDPNRRIIH 71

Query: 63  SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
           SSLY SLR NLPRE+MGF+ YPF+A+N +   D RR+PGH EVL YLQ+FA EFG++++V
Sbjct: 72  SSLYSSLRTNLPREVMGFKDYPFIAKN-DKKRDQRRFPGHREVLLYLQDFASEFGIEEMV 130

Query: 123 RLHTEVLNARLVESN--KWKVKSRKK---DDV-------VEEETFDAVVVCNGHFSVPRL 170
           R  TEV++   VE N  KW V+S++K   DD        V+EE +DAVV+CNGH++ PR+
Sbjct: 131 RFDTEVVHVGPVEDNIGKWIVRSKRKISDDDREVSFGFDVDEEIYDAVVICNGHYTEPRI 190

Query: 171 AQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230
           AQ+PGI SWPGKQMHSHNYR P  FQDQV ILIG  AS  DI R++AG AKEVH+ASRSV
Sbjct: 191 AQIPGISSWPGKQMHSHNYRTPEGFQDQVAILIGSSASSDDISREIAGVAKEVHVASRSV 250

Query: 231 ADETHEKQPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLETNGI 290
           ADET+++QPGYDNMWLHSM+E  ++DG+V+FRNGRVV AD+I+HCTGYKY++PFL+TNGI
Sbjct: 251 ADETYQEQPGYDNMWLHSMIESVHDDGSVIFRNGRVVVADIILHCTGYKYHFPFLDTNGI 310

Query: 291 VTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQD 350
           VT+D+NRV PLYK VFPPVLAP LSFVG+P KV+PFP  ELQ+KWIA VLSG I LPS +
Sbjct: 311 VTMDENRVAPLYKQVFPPVLAPWLSFVGLPWKVVPFPLVELQTKWIAGVLSGHIALPSPE 370

Query: 351 EMMEDVKAFYSKLEASGKPKRYTHIMDYPQLIEYTDWLAAQCNCQGYEEWRKQMAYSAFK 410
           EMMEDVKAFY  LE+S KPK YTH +   Q  EY +WLA+QC C G EEWR+QM Y A  
Sbjct: 371 EMMEDVKAFYETLESSNKPKHYTHNLGGCQF-EYDNWLASQCGCPGIEEWRRQM-YDAAS 428

Query: 411 NAFITRPGTYRDEWDDEHLVAEANKDFIKYT 441
            +   RP  YRDEWDD+ LV EA  DF KYT
Sbjct: 429 KSKRLRPEIYRDEWDDDDLVLEAYGDFTKYT 459

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577823|ref|XP_002529785.1| dimethylaniline monooxygenase, putative [Ricinus communis] gi|223530729|gb|EEF32599.1| dimethylaniline monooxygenase, putative [Ricinus communis]

 Score =  576 bits (1485), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 279/418 (66%), Positives = 333/418 (79%), Gaps = 7/418 (1%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
           RHVAVIGAGA+GLV   EL REGH VVV+E+  Q+GG+W+Y    E DPLG+DPNR  +H
Sbjct: 8   RHVAVIGAGASGLVTARELRREGHEVVVFERQSQIGGTWVYDPRVEPDPLGLDPNRTIIH 67

Query: 63  SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
           SSLYKSLR NLPRELMGF+ YPF+ +N +G  D RRYP H EVL YLQ+FA+EF ++++V
Sbjct: 68  SSLYKSLRTNLPRELMGFKDYPFIPKN-DGMRDPRRYPCHREVLLYLQDFAKEFEIEEMV 126

Query: 123 RLHTEVLNARLVE-SNKWKVKSRKKD-DV---VEEETFDAVVVCNGHFSVPRLAQVPGID 177
           R  TEV+   LVE SNKWKV+S+KK  D+     +E +DAVVVCNGHF+ PR+A +PGI 
Sbjct: 127 RFGTEVVYVELVEDSNKWKVRSKKKRLDLYFDFSDEVYDAVVVCNGHFTEPRVADIPGIS 186

Query: 178 SWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEK 237
           SWPGKQMH HNYR+P PF+D+VVILIG   S  D+ R++AG AKEVH+ASRSVADET+E+
Sbjct: 187 SWPGKQMHCHNYRVPEPFKDRVVILIGCATSATDLSREIAGVAKEVHVASRSVADETYEE 246

Query: 238 QPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNR 297
           QPGYDN+WLHSM+E  +EDG+VVFR+GRVV AD+I+ CTGYKY++PFLET GIVTVDDNR
Sbjct: 247 QPGYDNIWLHSMIECVHEDGSVVFRSGRVVHADIILQCTGYKYHFPFLETKGIVTVDDNR 306

Query: 298 VGPLYKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVK 357
           VGPLYKHVFPPVLAP LSFVGIP KVIPF  FE QSKWIA VLSGRI LPS++EMMED++
Sbjct: 307 VGPLYKHVFPPVLAPWLSFVGIPFKVIPFRMFEYQSKWIAGVLSGRIELPSREEMMEDIE 366

Query: 358 AFYSKLEASGKPKRYTHIMDYPQLIEYTDWLAAQCNCQGYEEWRKQMAYSAFKNAFIT 415
           AFY  LEAS  PKRYTH M Y Q  EY +WLA++C  Q  EEW KQM ++      IT
Sbjct: 367 AFYLSLEASNTPKRYTHEMYYSQF-EYYNWLASECGGQELEEWIKQMFFAVMSGKMIT 423

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123136|ref|XP_002319003.1| predicted protein [Populus trichocarpa] gi|222857379|gb|EEE94926.1| predicted protein [Populus trichocarpa]

 Score =  571 bits (1472), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 284/451 (62%), Positives = 351/451 (77%), Gaps = 12/451 (2%)

Query: 4   HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHS 63
           HVAVIGAGAAGLV   EL REGH VVV+EK +QVGG W+Y    E DPLG+D  R  VHS
Sbjct: 12  HVAVIGAGAAGLVAARELHREGHKVVVFEKDDQVGGLWMYDPRVEPDPLGLDLTRPVVHS 71

Query: 64  SLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVR 123
           SLY+SLR NLPRE MGF  YPFV R  EG  D RR+PGH EVL YLQ++AREFG++++VR
Sbjct: 72  SLYESLRTNLPRETMGFMDYPFVTREGEGR-DPRRFPGHREVLMYLQDYAREFGIEEMVR 130

Query: 124 LHTEVLNARLVESNKWKVKSRKK--------DDVVEEETFDAVVVCNGHFSVPRLAQVPG 175
              EV+N  +++S KWKVKS++K        DD  + E FDAVVVC GH++ PR+A++PG
Sbjct: 131 FGCEVVNVEMIDSGKWKVKSKRKRLDDNDRGDDFADHEDFDAVVVCVGHYTQPRIAEIPG 190

Query: 176 IDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS-VADET 234
           I+ WPGKQ+HSHNYRIP PF+DQ++ILIG  AS  DI  ++AG AKEVHIA RS V D+T
Sbjct: 191 INLWPGKQIHSHNYRIPEPFRDQIIILIGASASAADISVEIAGLAKEVHIARRSAVDDDT 250

Query: 235 HEKQPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVD 294
           +EK+PGYDN+WLHS +ERA EDGTV+FR+G V+ ADVI+HCTGYKY +PFL+T+GIVTVD
Sbjct: 251 YEKKPGYDNIWLHSTIERACEDGTVIFRDGSVILADVILHCTGYKYGFPFLKTDGIVTVD 310

Query: 295 DNRVGPLYKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMME 354
           DNRVGPLYKHVFPP+LAP LSFVGIP    PFP FE+QSKWIA VLSGRI LPSQ++M+E
Sbjct: 311 DNRVGPLYKHVFPPILAPWLSFVGIPYWTFPFPTFEVQSKWIAGVLSGRIALPSQEDMVE 370

Query: 355 DVKAFYSKLEASGKPKRYTHIMDYPQLIEYTDWLAAQCNCQGYEEWRKQMAYSAFKNAFI 414
           DVK +YS+LEASG PK +TH + +    +Y  WLA+QC C  +EEWR +M++   KN + 
Sbjct: 371 DVKIYYSELEASGVPKHHTHNLAH-STNDYNMWLASQCQCSCFEEWRIEMSHEILKN-WR 428

Query: 415 TRPGTYRDEWDDEHLVAEANKDFIKYTSNKS 445
            RP  YRDEWDD+HL+ +A++DF +  SNK+
Sbjct: 429 ARPNMYRDEWDDDHLILQAHEDFNRRISNKA 459

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844078|ref|XP_002889920.1| flavin-containing monooxygenase family protein [Arabidopsis lyrata subsp. lyrata] gi|297335762|gb|EFH66179.1| flavin-containing monooxygenase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 279/446 (62%), Positives = 339/446 (76%), Gaps = 7/446 (1%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
           RHVAVIGAGAAGLV   EL REGH+VVV E+G Q+GG W+YTSE E DPL +DP R  VH
Sbjct: 12  RHVAVIGAGAAGLVAARELRREGHSVVVLERGSQIGGVWVYTSEVEPDPLSLDPTRPVVH 71

Query: 63  SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
           SSLYKSLR N+PRE MGF  +PF  R ++GS D RR+P H EVL YL++FA+EF ++++V
Sbjct: 72  SSLYKSLRTNIPRECMGFTDFPFATRPHDGSRDPRRHPAHTEVLAYLRDFAKEFDIEEMV 131

Query: 123 RLHTEVLNARLV-----ESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGID 177
           R  TEV+ A  +     E  KWKV+SR  D +  E  +DAVVVCNGH++ PR A + GID
Sbjct: 132 RFETEVVKAEQMAAEGEERGKWKVESRSSDGIANE-IYDAVVVCNGHYTEPRHALITGID 190

Query: 178 SWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEK 237
           SWPGKQ+HSHNYR+P+ F+DQVVI+IG  ASG+DI RD+A  AKEVH++SRS + ET+EK
Sbjct: 191 SWPGKQIHSHNYRVPDQFKDQVVIVIGSSASGVDICRDIAQVAKEVHVSSRSTSPETYEK 250

Query: 238 QPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNR 297
             GYDN+WLHS +E A EDG+VVF N + V AD IMHCTGYKY +PFL+T G VTVDDNR
Sbjct: 251 LTGYDNLWLHSTIEIAREDGSVVFENRKTVYADTIMHCTGYKYYFPFLDTKGEVTVDDNR 310

Query: 298 VGPLYKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVK 357
           VGPLYKHVFPP LAP LSF+G+P ++ PFP FELQSKW+A+VLSGR+ LPSQDEM ED K
Sbjct: 311 VGPLYKHVFPPALAPSLSFIGLPWQITPFPMFELQSKWVAAVLSGRVSLPSQDEMREDTK 370

Query: 358 AFYSKLEASGKPKRYTHIMDYPQLIEYTDWLAAQCNCQGYEEWRKQMAYSAFKNAFITRP 417
           AFY KLEASG PKRYTH+M      EY +WLA QC     E+WR+QM Y  FK  +  + 
Sbjct: 371 AFYDKLEASGIPKRYTHLMPDDSQFEYDNWLADQCEYPRIEKWREQMFYIGFKRIY-AQS 429

Query: 418 GTYRDEWDDEHLVAEANKDFIKYTSN 443
            TYRD WDD+HL+ EA  DF+K+ S+
Sbjct: 430 ATYRDNWDDDHLIVEAYDDFVKFMSS 455

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221248|ref|NP_172684.1| dimethylaniline monooxygenase (N-oxide forming) [Arabidopsis thaliana] gi|75172924|sp|Q9FWW9.1|GSXL2_ARATH RecName: Full=Flavin-containing monooxygenase FMO GS-OX-like 2; AltName: Full=Flavin-monooxygenase glucosinolate S-oxygenase-like 2 gi|10086514|gb|AAG12574.1|AC022522_7 Unknown protein [Arabidopsis thaliana] gi|20258836|gb|AAM13900.1| unknown protein [Arabidopsis thaliana] gi|22136992|gb|AAM91725.1| unknown protein [Arabidopsis thaliana] gi|332190727|gb|AEE28848.1| dimethylaniline monooxygenase (N-oxide forming) [Arabidopsis thaliana]

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 277/446 (62%), Positives = 342/446 (76%), Gaps = 7/446 (1%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
           RHVAVIGAGAAGLV   EL REGH+VVV E+G Q+GG W YTS+ E DPL +DP R  VH
Sbjct: 12  RHVAVIGAGAAGLVAARELRREGHSVVVLERGSQIGGVWAYTSQVEPDPLSLDPTRPVVH 71

Query: 63  SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
           SSLY+SLR N+PRE MGF  +PF  R ++GS D RR+P H EVL YL++FA+EF ++++V
Sbjct: 72  SSLYRSLRTNIPRECMGFTDFPFATRPHDGSRDPRRHPAHTEVLAYLRDFAKEFDIEEMV 131

Query: 123 RLHTEVLNARLV-----ESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGID 177
           R  TEV+ A  V     E  KW+V+SR  D VV+E  +DAVVVCNGH++ PR A + GID
Sbjct: 132 RFETEVVKAEQVAAEGEERGKWRVESRSSDGVVDE-IYDAVVVCNGHYTEPRHALITGID 190

Query: 178 SWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEK 237
           SWPGKQ+HSHNYR+P+ F+DQVVI+IG  ASG+DI RD+A  AKEVH++SRS + +T+EK
Sbjct: 191 SWPGKQIHSHNYRVPDQFKDQVVIVIGSSASGVDICRDIAQVAKEVHVSSRSTSPDTYEK 250

Query: 238 QPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNR 297
             GY+N+WLHS ++ A EDG+VVF NG+ + AD IMHCTGYKY +PFL+T G VTVDDNR
Sbjct: 251 LTGYENLWLHSTIQIAREDGSVVFENGKTIYADTIMHCTGYKYYFPFLDTKGEVTVDDNR 310

Query: 298 VGPLYKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVK 357
           VGPLYKHVFPP LAP LSF+G+P ++ PFP FELQSKW+A+VLSGR+ LPSQDEMMED K
Sbjct: 311 VGPLYKHVFPPALAPSLSFIGLPWQITPFPMFELQSKWVAAVLSGRVSLPSQDEMMEDTK 370

Query: 358 AFYSKLEASGKPKRYTHIMDYPQLIEYTDWLAAQCNCQGYEEWRKQMAYSAFKNAFITRP 417
           AFY KLEASG PKRYTH+M      EY +WLA QC     E+WR+QM Y  FK  +  + 
Sbjct: 371 AFYDKLEASGIPKRYTHLMPDDSQFEYDNWLADQCEYPRIEKWREQMFYIGFKRIY-AQS 429

Query: 418 GTYRDEWDDEHLVAEANKDFIKYTSN 443
            TYRD WDD+HL+ EA  DF+K+ S+
Sbjct: 430 STYRDNWDDDHLIVEAYDDFVKFMSS 455

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577829|ref|XP_002529788.1| dimethylaniline monooxygenase, putative [Ricinus communis] gi|223530732|gb|EEF32602.1| dimethylaniline monooxygenase, putative [Ricinus communis]

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 285/489 (58%), Positives = 356/489 (72%), Gaps = 50/489 (10%)

Query: 1   MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYP 60
           + R VAVIGAGAAGLV   EL +EGH  VV+EK +Q+GG+W+YT   ESD LG++P+R  
Sbjct: 24  ICRRVAVIGAGAAGLVAARELRKEGHIAVVFEKDDQIGGTWVYTPRIESDLLGINPSRAI 83

Query: 61  VHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQ 120
           +HSS+Y+SLR NLPRELMGF  +PF++R  +G  D RR+P H EVL YLQ FA+EF +++
Sbjct: 84  IHSSIYESLRTNLPRELMGFMDFPFLSRQSDGR-DPRRFPSHREVLLYLQEFAKEFKIEE 142

Query: 121 VVRLHTEVLNARLVESN-KWKVKSRKKDDVVE------------EETFDAVVVCNGHFSV 167
           +VR + EV+N  +V+ N KWKVKS+ K+  +E            EE +DAVVVCNGH++ 
Sbjct: 143 MVRFNCEVVNMEMVDDNGKWKVKSKNKNKRLESDDNYGDDNGFLEEVYDAVVVCNGHYTE 202

Query: 168 PRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIAS 227
           PR+A++PGI+ WPGKQ+HSHNYR P PF+DQV+++IG+  S  D+  ++AG AKEVHI S
Sbjct: 203 PRIAEIPGINVWPGKQIHSHNYRTPEPFRDQVIVIIGNANSTADLSVEIAGVAKEVHIVS 262

Query: 228 RSVADETHEKQPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLET 287
           RSV DET+++QPGYDN+WLHSM++ ++EDGT+VFR+G V+ AD+I+HCTGYKY++PFLET
Sbjct: 263 RSVPDETNKRQPGYDNIWLHSMIKGSHEDGTIVFRDGSVILADIILHCTGYKYHFPFLET 322

Query: 288 NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRIVLP 347
            GIVTVDDNR+GPLYKHVFPPVLAP LSFVGIP KVIPFP FE QSKWIA VLSGRI+LP
Sbjct: 323 RGIVTVDDNRLGPLYKHVFPPVLAPWLSFVGIPWKVIPFPQFEFQSKWIAGVLSGRILLP 382

Query: 348 SQDEMMEDVKAFYSKLEASGKPKRYTHIM------------------------------- 376
           SQ+EMMEDV AFYS LEAS  PKRYTH M                               
Sbjct: 383 SQEEMMEDVNAFYSTLEASDMPKRYTHNMRKYQHLLYVDSLNLFHTIKDAGGRHCHPKKI 442

Query: 377 ----DYPQLIEYTDWLAAQCNCQGYEEWRKQMAYSAFKNAFITRPGTYRDEWDDEHLVAE 432
                 P   EY +WLAAQC C G EEWR+QM     +N  I RP TYRDEW+D+HL+ E
Sbjct: 443 LRHNQSPLQFEYNNWLAAQCQCPGVEEWRRQMYRLTGENKII-RPNTYRDEWEDDHLILE 501

Query: 433 ANKDFIKYT 441
           A +DF KYT
Sbjct: 502 AYEDFKKYT 510

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30696735|ref|NP_176450.2| flavin-containing monooxygenase-like protein [Arabidopsis thaliana] gi|313118273|sp|Q9SXD5.2|GSXL3_ARATH RecName: Full=Flavin-containing monooxygenase FMO GS-OX-like 3; AltName: Full=Flavin-monooxygenase glucosinolate S-oxygenase-like 3 gi|332195866|gb|AEE33987.1| flavin-containing monooxygenase-like protein [Arabidopsis thaliana]

 Score =  555 bits (1431), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 271/444 (61%), Positives = 336/444 (75%), Gaps = 11/444 (2%)

Query: 4   HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHS 63
           HVAVIGAG AGLV   EL REGH+VVV+EK +QVGG+WIYT E ESDPL VDP R  VHS
Sbjct: 12  HVAVIGAGPAGLVAARELRREGHSVVVFEKQKQVGGTWIYTDEVESDPLSVDPTRSVVHS 71

Query: 64  SLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVR 123
           S+Y+SLR+N  RE  G++ +PFV R+   S D RR+P H EVL YL++FA+EFG++++VR
Sbjct: 72  SVYRSLRINGTRECTGYRDFPFVVRS-GVSRDPRRFPSHGEVLAYLKDFAKEFGIEEMVR 130

Query: 124 LHTEVLNARLVES---NKWKVKSRKKDDVVE-EETFDAVVVCNGHFSVPRLAQVPGIDSW 179
             TEV+           KW+++S +K+  V  +E +DAVVVCNGH+  PRLAQ+PGI SW
Sbjct: 131 FETEVVKVSPAAEEGIGKWRIESTEKEKKVRRDEIYDAVVVCNGHYVEPRLAQIPGISSW 190

Query: 180 PGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQP 239
           PGK+MHSHNYRIP PF+D+VV+LIG+ +S  DI RD+A  AKEVH+A RS   +T  KQ 
Sbjct: 191 PGKEMHSHNYRIPEPFRDKVVVLIGNSSSAEDISRDIARVAKEVHVACRSNPADTFIKQT 250

Query: 240 GYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVG 299
           GY+N+W HSM+E  +EDG+VV++NG+ +S D+IMHCTGYKY++PFL+TNGIVTVDDNRVG
Sbjct: 251 GYNNLWTHSMIESVHEDGSVVYQNGKTISVDIIMHCTGYKYHFPFLDTNGIVTVDDNRVG 310

Query: 300 PLYKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAF 359
           PLYK VFPP  AP LSF+GIP +V+PFP FELQSKWIA VLSGRI LPS+++MM ++K F
Sbjct: 311 PLYKDVFPPAFAPWLSFIGIPWQVLPFPMFELQSKWIAGVLSGRIPLPSKEDMMIEIKTF 370

Query: 360 YSKLEASGKPKRYTHIMDYPQLIEYTDWLAAQCNCQGYEEWRKQM--AYSAFKNAFITRP 417
           YS LE  G PKRYTH M   Q  EY +WLA+QC C   EEWRK+M  A    K A    P
Sbjct: 371 YSTLEVQGIPKRYTHRMGNTQF-EYYNWLASQCGCSETEEWRKEMCLANGVRKEA---HP 426

Query: 418 GTYRDEWDDEHLVAEANKDFIKYT 441
            TYRDEWDD HLV+EA +DF  Y+
Sbjct: 427 ETYRDEWDDHHLVSEAYQDFSLYS 450

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15222405|ref|NP_176526.1| flavin-containing monooxygenase-like protein [Arabidopsis thaliana] gi|313118270|sp|Q9C8U0.2|GSXL5_ARATH RecName: Full=Flavin-containing monooxygenase FMO GS-OX-like 5; AltName: Full=Flavin-monooxygenase glucosinolate S-oxygenase-like 5 gi|332195970|gb|AEE34091.1| flavin-containing monooxygenase-like protein [Arabidopsis thaliana]

 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 270/444 (60%), Positives = 335/444 (75%), Gaps = 11/444 (2%)

Query: 4   HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHS 63
           HVAVIGAG AGLV   EL REGH+VVV+EK +QVGG+WIYT E ESDPL VDP R  VHS
Sbjct: 12  HVAVIGAGPAGLVAARELRREGHSVVVFEKQKQVGGTWIYTDEVESDPLSVDPTRSVVHS 71

Query: 64  SLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVR 123
           S+Y+SLR+N  RE  G++ +PFV R+   S D RR+P H EVL YL++FA+EFG++++VR
Sbjct: 72  SVYRSLRINGTRECTGYRDFPFVVRS-GVSRDRRRFPSHGEVLAYLKDFAKEFGIEEMVR 130

Query: 124 LHTEVLNARLVES---NKWKVKSRKKDDVVE-EETFDAVVVCNGHFSVPRLAQVPGIDSW 179
             TEV+           KW+++S +K+  V  +E +DAVVVCNGH+  PRLAQ+PGI SW
Sbjct: 131 FETEVVKVSPAAEEGIGKWRIESTEKEKKVRRDEIYDAVVVCNGHYVEPRLAQIPGISSW 190

Query: 180 PGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQP 239
           PGK+MHSHNYRIP PF+D+V +LIG+ +S  DI RD+A  AKEVH+A RS   +T  KQ 
Sbjct: 191 PGKEMHSHNYRIPEPFRDKVAVLIGNSSSAEDISRDIARVAKEVHVACRSNPADTFIKQT 250

Query: 240 GYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVG 299
           GY+N+W HSM+E  +EDG+VV++NG+ +S D+IMHCTGYKY++PFL+TNGIVTVDDNRVG
Sbjct: 251 GYNNLWTHSMIESVHEDGSVVYQNGKTISVDIIMHCTGYKYHFPFLDTNGIVTVDDNRVG 310

Query: 300 PLYKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAF 359
           PLYK VFPP  AP LSF+GIP +V+PFP FELQSKWIA VLSGRI LPS+++MM ++K F
Sbjct: 311 PLYKDVFPPAFAPWLSFIGIPWQVLPFPMFELQSKWIAGVLSGRIPLPSKEDMMIEIKTF 370

Query: 360 YSKLEASGKPKRYTHIMDYPQLIEYTDWLAAQCNCQGYEEWRKQM--AYSAFKNAFITRP 417
           YS LE  G PKRYTH M   Q  EY +WLA+QC C   EEWRK+M  A    K A    P
Sbjct: 371 YSTLEVQGIPKRYTHRMGNTQF-EYDNWLASQCGCSETEEWRKEMCLANGVRKEA---HP 426

Query: 418 GTYRDEWDDEHLVAEANKDFIKYT 441
            TYRDEWDD HLV+EA +DF  Y+
Sbjct: 427 ETYRDEWDDHHLVSEAYQDFSLYS 450

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125164|ref|XP_002329909.1| predicted protein [Populus trichocarpa] gi|222871146|gb|EEF08277.1| predicted protein [Populus trichocarpa]

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 271/443 (61%), Positives = 344/443 (77%), Gaps = 8/443 (1%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
           RHVAVIGAGAAGLV   EL REGH VVV+EK  Q+GG+W+YT + E+DPLG+DP R+ VH
Sbjct: 12  RHVAVIGAGAAGLVAARELRREGHQVVVFEKDSQIGGTWVYTPQVETDPLGLDPTRHIVH 71

Query: 63  SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
           +SLYKSLR NLPRE MGF  YPFV R  EGS D RR+PGH EVL+YLQ+FAREFG++++V
Sbjct: 72  TSLYKSLRTNLPRESMGFMDYPFVTRAGEGS-DPRRFPGHAEVLKYLQDFAREFGIEEMV 130

Query: 123 RLHTEVLNARLVESNKWKVKSRK-----KDDVVEEETFDAVVVCNGHFSVPRLAQVPGID 177
           R   EV++  +V++ K KVK ++      DD + +E FDAVVVCNGHF+ PR+A++PGI+
Sbjct: 131 RFECEVVSVEMVDNEKLKVKCKRMRPDGGDDDLLDEVFDAVVVCNGHFTYPRIAEIPGIN 190

Query: 178 SWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEK 237
            WPG Q+HSHNYR P  F+D+VVILIG  AS +D+  ++ G AKEVHIASRSVA++T+EK
Sbjct: 191 LWPGMQIHSHNYRTPELFKDKVVILIGSSASAIDLSLEIGGIAKEVHIASRSVANDTYEK 250

Query: 238 QPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNR 297
           +   DN+WLHSM++ A++DG+V FR+G  + AD+I+HCTGYKY +PFL+TNGIVTVDDNR
Sbjct: 251 RAECDNIWLHSMIKSAHKDGSVAFRDGNTIVADIILHCTGYKYYFPFLKTNGIVTVDDNR 310

Query: 298 VGPLYKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVK 357
           VGPLYKHVFPP+ AP LSFVG+P + +PFP FE+QSKWI+ VLS RIVLPSQ++MMEDV 
Sbjct: 311 VGPLYKHVFPPIFAPQLSFVGLPYRSLPFPIFEIQSKWISGVLSDRIVLPSQEDMMEDVN 370

Query: 358 AFYSKLEASGKPKRYTHIMDYPQLIEYTDWLAAQCNCQGYEEWRKQMAYSAFKNAFITRP 417
            FYS LE SG PK +TH M    +I+Y  W+A+ C C  +EEWR QM Y   K      P
Sbjct: 371 TFYSTLEDSGVPKHHTHSMG-DTMIDYNAWVASLCQCPCFEEWRVQMFYETAKR-LNANP 428

Query: 418 GTYRDEWDDEHLVAEANKDFIKY 440
            T+RDEW+D++LV +A +DF KY
Sbjct: 429 KTFRDEWEDDNLVLQACEDFSKY 451

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297840265|ref|XP_002888014.1| flavin-containing monooxygenase family protein [Arabidopsis lyrata subsp. lyrata] gi|297333855|gb|EFH64273.1| flavin-containing monooxygenase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  552 bits (1423), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 270/441 (61%), Positives = 335/441 (75%), Gaps = 11/441 (2%)

Query: 4   HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHS 63
           HVAVIGAG AGLV   EL REGH+VVV+EK +QVGG+WIYT E ESDPL VDP R  VHS
Sbjct: 12  HVAVIGAGPAGLVAARELRREGHSVVVFEKQKQVGGTWIYTDEVESDPLSVDPTRSVVHS 71

Query: 64  SLYKSLRVNLPRELMGFQAYPFVARN-YEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
           S+Y+SLR+N  RE  G++ YPFV R+    S D RRYP H EVL YL++FAREFG++++V
Sbjct: 72  SVYRSLRINGTRECTGYRDYPFVVRSGVSESRDPRRYPSHGEVLAYLKDFAREFGIEEMV 131

Query: 123 RLHTEVLN---ARLVESNKWKVKSRKKDDVVE-EETFDAVVVCNGHFSVPRLAQVPGIDS 178
           R  TEV+    A   E  KW+V+S +K+  V  +E +DAVVVCNGH+  PRLA++PGI S
Sbjct: 132 RFETEVVKVPPAAEGEIGKWRVESTEKEKRVRRDEIYDAVVVCNGHYVEPRLAEIPGISS 191

Query: 179 WPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQ 238
           WPGK+MHSHNY IP PF+DQVV+LIG+ +S  DI RD+A FAKEVH+A RS   +T  KQ
Sbjct: 192 WPGKEMHSHNYCIPEPFKDQVVVLIGNSSSAEDISRDIATFAKEVHVACRSNPADTFIKQ 251

Query: 239 PGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRV 298
            GY+N+W HS +E  +EDG+VVF+NG+ +S D+IMHCTGYKY++PFL+TNGIV+VDDNRV
Sbjct: 252 TGYNNLWTHSSIECVHEDGSVVFQNGKTISVDIIMHCTGYKYHFPFLDTNGIVSVDDNRV 311

Query: 299 GPLYKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKA 358
           GPLYK VFPP  AP LSF+GIP +V+PFP FELQSKWIA VLSGRI LPS+++M+ ++K 
Sbjct: 312 GPLYKDVFPPAFAPWLSFIGIPWQVLPFPMFELQSKWIAGVLSGRIPLPSKEDMIMEIKT 371

Query: 359 FYSKLEASGKPKRYTHIMDYPQLIEYTDWLAAQCNCQGYEEWRKQMAYSAF--KNAFITR 416
           FYS LE  G PKRYTH M   Q  EY +WLA+QC C   EEWRK+M  +    K A    
Sbjct: 372 FYSTLEFQGIPKRYTHRMGNTQF-EYDNWLASQCGCSETEEWRKEMCLANVVRKEA---H 427

Query: 417 PGTYRDEWDDEHLVAEANKDF 437
           P TYRDEW+D HL+++A +DF
Sbjct: 428 PETYRDEWEDHHLISQAYQDF 448

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	446
TAIR|locus:2201991	465	FMO "AT1G12200" [Arabidopsis t	0.984	0.944	0.594	1.6e-148
TAIR|locus:2203911	464	NOGC1 "AT1G62580" [Arabidopsis	0.943	0.907	0.590	4.8e-142
TAIR|locus:2203866	450	AT1G62620 "AT1G62620" [Arabido	0.934	0.926	0.607	5.5e-141
TAIR|locus:2203921	452	AT1G62600 "AT1G62600" [Arabido	0.941	0.929	0.608	7e-141
TAIR|locus:2031336	450	AT1G63370 "AT1G63370" [Arabido	0.934	0.926	0.605	8.9e-141
TAIR|locus:2201971	459	FMO GS-OX5 "flavin-monooxygena	0.934	0.908	0.577	8.3e-138
TAIR|locus:2203901	461	FMO GS-OX4 "AT1G62570" [Arabid	0.973	0.941	0.543	5.6e-132
TAIR|locus:2203891	462	FMO GS-OX3 "AT1G62560" [Arabid	0.932	0.900	0.541	1.5e-131
TAIR|locus:2203871	457	FMO GS-OX2 "AT1G62540" [Arabid	0.934	0.912	0.555	7.3e-130
TAIR|locus:2009754	459	FMO GS-OX1 "AT1G65860" [Arabid	0.973	0.945	0.527	7.3e-130

TAIR|locus:2201991 FMO "AT1G12200" [Arabidopsis thaliana (taxid:3702)]

 Score = 1450 (515.5 bits), Expect = 1.6e-148, P = 1.6e-148
 Identities = 265/446 (59%), Positives = 330/446 (73%)

Query:     3 RHXXXXXXXXXXXXXXHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
             RH               EL REGH+VVV E+G Q+GG W YTS+ E DPL +DP R  VH
Sbjct:    12 RHVAVIGAGAAGLVAARELRREGHSVVVLERGSQIGGVWAYTSQVEPDPLSLDPTRPVVH 71

Query:    63 SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
             SSLY+SLR N+PRE MGF  +PF  R ++GS D RR+P H EVL YL++FA+EF ++++V
Sbjct:    72 SSLYRSLRTNIPRECMGFTDFPFATRPHDGSRDPRRHPAHTEVLAYLRDFAKEFDIEEMV 131

Query:   123 RLHTEVLNARLV-----ESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGID 177
             R  TEV+ A  V     E  KW+V+SR  D VV+E  +DAVVVCNGH++ PR A + GID
Sbjct:   132 RFETEVVKAEQVAAEGEERGKWRVESRSSDGVVDE-IYDAVVVCNGHYTEPRHALITGID 190

Query:   178 SWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEK 237
             SWPGKQ+HSHNYR+P+ F+DQVVI+IG  ASG+DI RD+A  AKEVH++SRS + +T+EK
Sbjct:   191 SWPGKQIHSHNYRVPDQFKDQVVIVIGSSASGVDICRDIAQVAKEVHVSSRSTSPDTYEK 250

Query:   238 QPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNR 297
               GY+N+WLHS ++ A EDG+VVF NG+ + AD IMHCTGYKY +PFL+T G VTVDDNR
Sbjct:   251 LTGYENLWLHSTIQIAREDGSVVFENGKTIYADTIMHCTGYKYYFPFLDTKGEVTVDDNR 310

Query:   298 VGPLYKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVK 357
             VGPLYKHVFPP LAP LSF+G+P ++ PFP FELQSKW+A+VLSGR+ LPSQDEMMED K
Sbjct:   311 VGPLYKHVFPPALAPSLSFIGLPWQITPFPMFELQSKWVAAVLSGRVSLPSQDEMMEDTK 370

Query:   358 AFYSKLEASGKPKRYTHIMDYPQLIEYTDWLAAQCNCQGYEEWRKQMAYSAFKNAFITRP 417
             AFY KLEASG PKRYTH+M      EY +WLA QC     E+WR+QM Y  FK  +  + 
Sbjct:   371 AFYDKLEASGIPKRYTHLMPDDSQFEYDNWLADQCEYPRIEKWREQMFYIGFKRIY-AQS 429

Query:   418 GTYRDEWDDEHLVAEANKDFIKYTSN 443
              TYRD WDD+HL+ EA  DF+K+ S+
Sbjct:   430 STYRDNWDDDHLIVEAYDDFVKFMSS 455

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050832 "defense response to fungus" evidence=IEP

TAIR|locus:2203911 NOGC1 "AT1G62580" [Arabidopsis thaliana (taxid:3702)]

 Score = 1389 (494.0 bits), Expect = 4.8e-142, P = 4.8e-142
 Identities = 252/427 (59%), Positives = 319/427 (74%)

Query:    20 ELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79
             EL REGH+VVV+E+G  +GG W YT   E DPL +DP R  +HSSLY SLR  +P+E MG
Sbjct:    29 ELRREGHSVVVFERGNHIGGVWAYTPNVEPDPLSIDPTRPVIHSSLYSSLRTIIPQECMG 88

Query:    80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN-- 137
             F  +PF  R   GS D RR+PGH EVL YL++F REF +++++R  TEV+       N  
Sbjct:    89 FTDFPFSTRLENGSRDPRRHPGHSEVLAYLRDFVREFKIEEMIRFETEVVRVEQAGENPK 148

Query:   138 KWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQD 197
             KW+VKSR   D+  +E +DAVVVCNGH++ PR A +PGID+WPGKQ+HSHNYR+P   +D
Sbjct:   149 KWRVKSRNFGDI-SDEIYDAVVVCNGHYTEPRHALIPGIDTWPGKQIHSHNYRVPEQVKD 207

Query:   198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVERANEDG 257
             QVV++IG   SG+DI RD+A   KEVHI+SRS   ET+EK PGYDN+WLHS +E   EDG
Sbjct:   208 QVVVVIGSSVSGVDISRDIANVTKEVHISSRSTKPETYEKLPGYDNLWLHSNIETVREDG 267

Query:   258 TVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFV 317
             +VVF+NG+ V AD IMHCTGYKY +PFL+T G VTV+DNRVGPLYKHVFPP L+PGLSF+
Sbjct:   268 SVVFKNGKTVYADTIMHCTGYKYYFPFLDTKGEVTVEDNRVGPLYKHVFPPALSPGLSFI 327

Query:   318 GIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYSKLEASGKPKRYTHIM- 376
             G+P +VIPFP FELQSKW+A+VL+GR+ LPSQ+EM ED K FY KLEAS  PKRYTH+M 
Sbjct:   328 GLPWQVIPFPMFELQSKWVAAVLAGRVSLPSQEEM-EDTKMFYLKLEASCIPKRYTHLMA 386

Query:   377 DYPQLIEYTDWLAAQCNCQGYEEWRKQMAYSAFKNAFITRPGTYRDEWDDEHLVAEANKD 436
             +      Y +WLA QC+    E+WR+QM Y  FK    ++  TY+D+WDD+HL+AEA +D
Sbjct:   387 ELDSQFVYNNWLADQCDYPRIEKWREQMFYKVFKR-IQSQASTYKDDWDDDHLIAEAYED 445

Query:   437 FIKYTSN 443
             F+K+ SN
Sbjct:   446 FVKFPSN 452

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0031227 "intrinsic to endoplasmic reticulum membrane" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004383 "guanylate cyclase activity" evidence=IDA

GO:0019825 "oxygen binding" evidence=IDA

GO:0070026 "nitric oxide binding" evidence=IDA

TAIR|locus:2203866 AT1G62620 "AT1G62620" [Arabidopsis thaliana (taxid:3702)]

 Score = 1379 (490.5 bits), Expect = 5.5e-141, P = 5.5e-141
 Identities = 260/428 (60%), Positives = 325/428 (75%)

Query:    20 ELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79
             EL REGH+VVV+EK +QVGG+WIYT E ESDPL VDP R  VHSS+Y+SLR+N  RE  G
Sbjct:    28 ELRREGHSVVVFEKQKQVGGTWIYTDEVESDPLSVDPTRSVVHSSVYRSLRINGTRECTG 87

Query:    80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNAR-LVESN- 137
             ++ +PFV R+   S D RR+P H EVL YL++FA+EFG++++VR  TEV+      E   
Sbjct:    88 YRDFPFVVRSGV-SRDPRRFPSHGEVLAYLKDFAKEFGIEEMVRFETEVVKVSPAAEEGI 146

Query:   138 -KWKVKSRKKDDVVE-EETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPF 195
              KW+++S +K+  V  +E +DAVVVCNGH+  PRLAQ+PGI SWPGK+MHSHNYRIP PF
Sbjct:   147 GKWRIESTEKEKKVRRDEIYDAVVVCNGHYVEPRLAQIPGISSWPGKEMHSHNYRIPEPF 206

Query:   196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVERANE 255
             +D+VV+LIG+ +S  DI RD+A  AKEVH+A RS   +T  KQ GY+N+W HSM+E  +E
Sbjct:   207 RDKVVVLIGNSSSAEDISRDIARVAKEVHVACRSNPADTFIKQTGYNNLWTHSMIESVHE 266

Query:   256 DGTVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVFPPVLAPGLS 315
             DG+VV++NG+ +S D+IMHCTGYKY++PFL+TNGIVTVDDNRVGPLYK VFPP  AP LS
Sbjct:   267 DGSVVYQNGKTISVDIIMHCTGYKYHFPFLDTNGIVTVDDNRVGPLYKDVFPPAFAPWLS 326

Query:   316 FVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYSKLEASGKPKRYTHI 375
             F+GIP +V+PFP FELQSKWIA VLSGRI LPS+++MM ++K FYS LE  G PKRYTH 
Sbjct:   327 FIGIPWQVLPFPMFELQSKWIAGVLSGRIPLPSKEDMMIEIKTFYSTLEVQGIPKRYTHR 386

Query:   376 MDYPQLIEYTDWLAAQCNCQGYEEWRKQM--AYSAFKNAFITRPGTYRDEWDDEHLVAEA 433
             M   Q  EY +WLA+QC C   EEWRK+M  A    K A    P TYRDEWDD HLV+EA
Sbjct:   387 MGNTQF-EYYNWLASQCGCSETEEWRKEMCLANGVRKEA---HPETYRDEWDDHHLVSEA 442

Query:   434 NKDFIKYT 441
              +DF  Y+
Sbjct:   443 YQDFSLYS 450

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2203921 AT1G62600 "AT1G62600" [Arabidopsis thaliana (taxid:3702)]

 Score = 1378 (490.1 bits), Expect = 7.0e-141, P = 7.0e-141
 Identities = 260/427 (60%), Positives = 322/427 (75%)

Query:    20 ELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79
             EL REGH+VVV+E+ +QVGG+WIYT   E DPL VDP R  VHSS+Y SLR NLPRE MG
Sbjct:    28 ELRREGHSVVVFERQKQVGGTWIYTDHIEPDPLSVDPTRSVVHSSVYGSLRTNLPRECMG 87

Query:    80 FQAYPFVARN-YEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLN-ARLVE-- 135
             ++ +PFV R+    S D RR+P H EVL YLQ+FA+EF +++++R  T V+  A   E  
Sbjct:    88 YRDFPFVIRSDVSESRDPRRFPSHGEVLAYLQDFAKEFAIEEMIRFDTAVVKVAPAAEEG 147

Query:   136 SNKWKVKSRKKDD-VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNP 194
             S KW+++S +K+  V+ +E +DAVVVCNGH+  PR A++PGI SWPGK+MHSHNYRIP P
Sbjct:   148 SGKWRIESTEKEKKVLRDEIYDAVVVCNGHYIEPRHAEIPGISSWPGKEMHSHNYRIPEP 207

Query:   195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVERAN 254
             F+DQVV+LIG+ AS  DI RD+A  AKEVH+A RS A +T+ ++PGY N+W+HSM+E  +
Sbjct:   208 FRDQVVVLIGNSASADDISRDIARVAKEVHVACRSNAADTYIERPGYSNLWMHSMIESVH 267

Query:   255 EDGTVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVFPPVLAPGL 314
             EDG+VVF+NG+ +S DVIMHCTGYKY++PFLETNG VTVDDNRVGPLYK VF P  AP L
Sbjct:   268 EDGSVVFQNGKTISVDVIMHCTGYKYHFPFLETNGNVTVDDNRVGPLYKDVFSPAFAPWL 327

Query:   315 SFVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYSKLEASGKPKRYTH 374
             SFVGIP KV+PFP FELQSKWIA VLSGRI LPS+++MM ++K  YS L+A G  KRYTH
Sbjct:   328 SFVGIPWKVVPFPMFELQSKWIAGVLSGRIPLPSKEDMMMEIKTLYSTLDAQGIAKRYTH 387

Query:   375 IMDYPQLIEYTDWLAAQCNCQGYEEWRKQMAYSAFKNAFITRPGTYRDEWDDEHLVAEAN 434
              M   Q  EY  WLA+QC C   EEWRK+M Y A        P TYRDEWDD HLV++A 
Sbjct:   388 QMGISQF-EYNSWLASQCGCSETEEWRKEM-YFATGVKKRAHPETYRDEWDDHHLVSQAY 445

Query:   435 KDFIKYT 441
             +DF  YT
Sbjct:   446 QDFSLYT 452

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2031336 AT1G63370 "AT1G63370" [Arabidopsis thaliana (taxid:3702)]

 Score = 1377 (489.8 bits), Expect = 8.9e-141, P = 8.9e-141
 Identities = 259/428 (60%), Positives = 324/428 (75%)

Query:    20 ELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79
             EL REGH+VVV+EK +QVGG+WIYT E ESDPL VDP R  VHSS+Y+SLR+N  RE  G
Sbjct:    28 ELRREGHSVVVFEKQKQVGGTWIYTDEVESDPLSVDPTRSVVHSSVYRSLRINGTRECTG 87

Query:    80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNAR-LVESN- 137
             ++ +PFV R+   S D RR+P H EVL YL++FA+EFG++++VR  TEV+      E   
Sbjct:    88 YRDFPFVVRSGV-SRDRRRFPSHGEVLAYLKDFAKEFGIEEMVRFETEVVKVSPAAEEGI 146

Query:   138 -KWKVKSRKKDDVVE-EETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPF 195
              KW+++S +K+  V  +E +DAVVVCNGH+  PRLAQ+PGI SWPGK+MHSHNYRIP PF
Sbjct:   147 GKWRIESTEKEKKVRRDEIYDAVVVCNGHYVEPRLAQIPGISSWPGKEMHSHNYRIPEPF 206

Query:   196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVERANE 255
             +D+V +LIG+ +S  DI RD+A  AKEVH+A RS   +T  KQ GY+N+W HSM+E  +E
Sbjct:   207 RDKVAVLIGNSSSAEDISRDIARVAKEVHVACRSNPADTFIKQTGYNNLWTHSMIESVHE 266

Query:   256 DGTVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVFPPVLAPGLS 315
             DG+VV++NG+ +S D+IMHCTGYKY++PFL+TNGIVTVDDNRVGPLYK VFPP  AP LS
Sbjct:   267 DGSVVYQNGKTISVDIIMHCTGYKYHFPFLDTNGIVTVDDNRVGPLYKDVFPPAFAPWLS 326

Query:   316 FVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYSKLEASGKPKRYTHI 375
             F+GIP +V+PFP FELQSKWIA VLSGRI LPS+++MM ++K FYS LE  G PKRYTH 
Sbjct:   327 FIGIPWQVLPFPMFELQSKWIAGVLSGRIPLPSKEDMMIEIKTFYSTLEVQGIPKRYTHR 386

Query:   376 MDYPQLIEYTDWLAAQCNCQGYEEWRKQM--AYSAFKNAFITRPGTYRDEWDDEHLVAEA 433
             M   Q  EY +WLA+QC C   EEWRK+M  A    K A    P TYRDEWDD HLV+EA
Sbjct:   387 MGNTQF-EYDNWLASQCGCSETEEWRKEMCLANGVRKEA---HPETYRDEWDDHHLVSEA 442

Query:   434 NKDFIKYT 441
              +DF  Y+
Sbjct:   443 YQDFSLYS 450

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2201971 FMO GS-OX5 "flavin-monooxygenase glucosinolate S-oxygenase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1349 (479.9 bits), Expect = 8.3e-138, P = 8.3e-138
 Identities = 243/421 (57%), Positives = 320/421 (76%)

Query:    20 ELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79
             EL RE HTVVV+E+  +VGG W+YT  +E DPL +DPNR  VHSS+Y SLR NLPRE MG
Sbjct:    28 ELRRENHTVVVFERDSKVGGLWVYTPNSEPDPLSLDPNRTIVHSSVYDSLRTNLPRECMG 87

Query:    80 FQAYPFVARNYEG-SVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK 138
             ++ +PFV R  +  S D RRYP H EVL YL++FAREF + ++VR  TEV+     E  K
Sbjct:    88 YRDFPFVPRPEDDESRDSRRYPSHREVLAYLEDFAREFKLVEMVRFKTEVVLVE-PEDKK 146

Query:   139 WKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQ 198
             W+V+S+  D + ++E FDAVVVCNGH++ PR+A VPGIDSWPGKQ+HSHNYR+P+ F+DQ
Sbjct:   147 WRVQSKNSDGISKDEIFDAVVVCNGHYTEPRVAHVPGIDSWPGKQIHSHNYRVPDQFKDQ 206

Query:   199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVERANEDGT 258
             VV++IG++ASG DI RD+ G AKEVHIASRS   +T+ K PG +N+WLHSM+E  +EDGT
Sbjct:   207 VVVVIGNFASGADISRDITGVAKEVHIASRSNPSKTYSKLPGSNNLWLHSMIESVHEDGT 266

Query:   259 VVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVG 318
             +VF+NG+VV AD I+HCTGYKY++PFL TNG +TV+DN VGPLY+HVFPP LAPGLSF+G
Sbjct:   267 IVFQNGKVVQADTIVHCTGYKYHFPFLNTNGYITVEDNCVGPLYEHVFPPALAPGLSFIG 326

Query:   319 IPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYSKLEASGKPKRYTHIMDY 378
             +P   + F  FELQSKW+A+ LSGR+ LPS+++MMEDV A+Y+K EA G+PKRYTH +  
Sbjct:   327 LPWMTLQFFMFELQSKWVAAALSGRVTLPSEEKMMEDVTAYYAKREAFGQPKRYTHRLGG 386

Query:   379 PQLIEYTDWLAAQCNCQGYEEWRKQMAYSAFKNAFITRPGTYRDEWDDEHLVAEANKDFI 438
              Q ++Y +W+A Q      E+WR Q     +     T+  T+RD+WDD+HL+ EA +DF+
Sbjct:   387 GQ-VDYLNWIAEQIGAPPGEQWRYQEINGGYYR-LATQSDTFRDKWDDDHLIVEAYEDFL 444

Query:   439 K 439
             +
Sbjct:   445 R 445

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=IMP

GO:0080107 "8-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP;IDA

TAIR|locus:2203901 FMO GS-OX4 "AT1G62570" [Arabidopsis thaliana (taxid:3702)]

 Score = 1294 (460.6 bits), Expect = 5.6e-132, P = 5.6e-132
 Identities = 238/438 (54%), Positives = 312/438 (71%)

Query:     3 RHXXXXXXXXXXXXXXHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
             +H               EL REGHTVVV ++ +QVGG W+YT ETESD LG+DP R  VH
Sbjct:    11 QHVAVIGAGAAGLVAARELRREGHTVVVLDREKQVGGLWVYTPETESDELGLDPTRPIVH 70

Query:    63 SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
             SS+YKSLR NLPRE MG++ +PFV R  + S D RRYP H EVL YLQ+FA EF +++++
Sbjct:    71 SSVYKSLRTNLPRECMGYKDFPFVPRGDDPSRDSRRYPSHREVLAYLQDFATEFNIEEMI 130

Query:   123 RLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGK 182
             R  TEVL    V + KW+V+S+       +E +DAVV+C GHF+ P +AQ+PGI+SWPG+
Sbjct:   131 RFETEVLRVEPV-NGKWRVQSKTGGGFSNDEIYDAVVMCCGHFAEPNIAQIPGIESWPGR 189

Query:   183 QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQP-GY 241
             Q HSH+YR+P+PF+D+VV++IG++ASG DI RD++  AKEVHIASR+    T EK+P   
Sbjct:   190 QTHSHSYRVPDPFKDEVVVVIGNFASGADISRDISKVAKEVHIASRASKSNTFEKRPVPN 249

Query:   242 DNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPL 301
             +N+W+HS ++ A+EDGT+VF+NG+VV AD I+HCTGYKY +PFLETN  + VDDNRV PL
Sbjct:   250 NNLWMHSEIDTAHEDGTIVFKNGKVVHADTIVHCTGYKYYFPFLETNNYMRVDDNRVEPL 309

Query:   302 YKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYS 361
             YKH+FPP LAPGLSF+G+P   + F  FE+QSKW+A+VLSGR+ LPS DEMM+D+K  Y 
Sbjct:   310 YKHIFPPALAPGLSFIGLPAMGLQFYMFEVQSKWVAAVLSGRVTLPSVDEMMDDLKLSYE 369

Query:   362 KLEASGKPKRYTHIMDYPQLIEYTDWLAAQCNCQGYEEWRKQMAYSAFKNAFITRPGTYR 421
               EA G PKRYTH +   Q  EY DW+A  C     E WR Q     ++     +P T+R
Sbjct:   370 TQEALGIPKRYTHKLGKSQC-EYLDWIADLCGFPHVEHWRDQEVTRGYQRLG-NQPETFR 427

Query:   422 DEWDDEHLVAEANKDFIK 439
             DEWDD+ L+ EA +DF +
Sbjct:   428 DEWDDDDLMEEAYEDFAR 445

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=IMP

GO:0080103 "4-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IDA

GO:0080107 "8-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IDA

TAIR|locus:2203891 FMO GS-OX3 "AT1G62560" [Arabidopsis thaliana (taxid:3702)]

 Score = 1290 (459.2 bits), Expect = 1.5e-131, P = 1.5e-131
 Identities = 227/419 (54%), Positives = 314/419 (74%)

Query:    20 ELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79
             EL REGH+VVV+E+ +QVGG W+YT +++SDPL +DP R  VHSS+Y+SLR N+PRE MG
Sbjct:    28 ELRREGHSVVVFEREKQVGGLWVYTPKSDSDPLSLDPTRSKVHSSIYESLRTNVPRESMG 87

Query:    80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW 139
              + +PF+ R  + S D RRYP H EVL Y+Q+FAREF +++++R  TEV+    V++  W
Sbjct:    88 VRDFPFLPRFDDESRDARRYPNHREVLAYIQDFAREFKIEEMIRFETEVVRVEPVDNGNW 147

Query:   140 KVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQV 199
             +V+S+     +E+E +DAVVVCNGH++ P +A +PGI SWPGKQ+HSHNYR+P+PF+++V
Sbjct:   148 RVQSKNSGGFLEDEIYDAVVVCNGHYTEPNIAHIPGIKSWPGKQIHSHNYRVPDPFENEV 207

Query:   200 VILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEK-QPGYDNMWLHSMVERANEDGT 258
             V++IG++ASG DI RD+A  AKEVHIASR+    T+EK     +N+W+HS ++  +EDG+
Sbjct:   208 VVVIGNFASGADISRDIAKVAKEVHIASRAREPHTYEKISVPQNNLWMHSEIDTTHEDGS 267

Query:   259 VVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVG 318
             +VF+NG+V+ AD I++CTGYKYN+PFLETNG + +D+ RV PLYKHVFPP LAPGL+FVG
Sbjct:   268 IVFKNGKVIFADSIVYCTGYKYNFPFLETNGYLRIDEKRVEPLYKHVFPPALAPGLAFVG 327

Query:   319 IPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYSKLEASGKPKRYTHIMDY 378
             +P   I F  FE+QSKW+A+VLSGR+ LPS D+MMED+ A+Y+ L+A G PKR+TH +  
Sbjct:   328 LPAMGIVFVMFEIQSKWVAAVLSGRVTLPSTDKMMEDINAWYASLDALGIPKRHTHTIGR 387

Query:   379 PQLIEYTDWLAAQCNCQGYEEWRKQMAYSAFKNAFITRPGTYRDEWDDEHLVAEANKDF 437
              Q  EY +W+A +  C+  E WR Q     +    +  P TYRDEWDD+ L+ EA  DF
Sbjct:   388 IQS-EYLNWVAKESGCELVERWRGQEVDGGYLR-LVAHPETYRDEWDDDELIEEAYNDF 444

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA;IMP

GO:0080102 "3-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080103 "4-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP;IDA

GO:0080104 "5-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080105 "6-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080106 "7-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080107 "8-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP;IDA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2203871 FMO GS-OX2 "AT1G62540" [Arabidopsis thaliana (taxid:3702)]

 Score = 1274 (453.5 bits), Expect = 7.3e-130, P = 7.3e-130
 Identities = 234/421 (55%), Positives = 311/421 (73%)

Query:    20 ELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG 79
             EL REGHTVVV E+ ++VGG WIY+ + ESDPL +DP R  VHSS+Y+SLR NLPRE MG
Sbjct:    28 ELSREGHTVVVLEREKEVGGLWIYSPKAESDPLSLDPTRSIVHSSVYESLRTNLPRECMG 87

Query:    80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW 139
             F  +PFV R  + S D RRYP H EVL YLQ+FAREF ++++VR   EV+    V + KW
Sbjct:    88 FTDFPFVPRFDDESRDSRRYPSHMEVLAYLQDFAREFNLEEMVRFEIEVVRVEPV-NGKW 146

Query:   140 KVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQV 199
             +V S+    V  +E FDAVVVC+GH++ P +A +PGI SWPGKQ+HSHNYR+P PF+++V
Sbjct:   147 RVWSKTSGGVSHDEIFDAVVVCSGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPGPFENEV 206

Query:   200 VILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQP-GYDNMWLHSMVERANEDGT 258
             V++IG++ASG DI RD+A  AKEVHIASR+   +T+EK P   +N+W+HS ++ A EDG+
Sbjct:   207 VVVIGNFASGADISRDIAKVAKEVHIASRASEFDTYEKLPVPRNNLWIHSEIDTAYEDGS 266

Query:   259 VVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVG 318
             +VF+NG+VV AD I++CTGYKY + FLETNG + +D+NRV  LYKHVFPP L+PGLSFVG
Sbjct:   267 IVFKNGKVVYADSIVYCTGYKYRFTFLETNGYMNIDENRVEHLYKHVFPPALSPGLSFVG 326

Query:   319 IPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYSKLEASGKPKRYTHIMDY 378
             +P   I F  FE+QSKW+A+VLS R+ LP++D+MMED+ A+Y+ L+A G PKRYTH +  
Sbjct:   327 LPSMGIQFVMFEIQSKWVAAVLSRRVTLPTEDKMMEDISAWYASLDAVGIPKRYTHKLGK 386

Query:   379 PQLIEYTDWLAAQCNCQGYEEWRKQMAYSAFKNAFITRPGTYRDEWDDEHLVAEANKDFI 438
              Q  EY +W+A +C C   E WR Q     ++   ++ P TYRDEWDD  L+ EA +DF 
Sbjct:   387 IQS-EYLNWVAEECGCPLVEHWRNQQIVRGYQR-LVSHPETYRDEWDDNDLMEEAYEDFA 444

Query:   439 K 439
             +
Sbjct:   445 R 445

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=IMP

GO:0080102 "3-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080103 "4-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP;IDA

GO:0080104 "5-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080106 "7-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080107 "8-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP;IDA

TAIR|locus:2009754 FMO GS-OX1 "AT1G65860" [Arabidopsis thaliana (taxid:3702)]

 Score = 1274 (453.5 bits), Expect = 7.3e-130, P = 7.3e-130
 Identities = 231/438 (52%), Positives = 313/438 (71%)

Query:     3 RHXXXXXXXXXXXXXXHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
             +H               EL REGHTVVV+++ +QVGG W Y+S+ +SDPL +D  R  VH
Sbjct:    11 KHVAVIGAGAAGLVTARELRREGHTVVVFDREKQVGGLWNYSSKADSDPLSLDTTRTIVH 70

Query:    63 SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
             +S+Y+SLR NLPRE MGF  +PFV R ++ S D RRYP H EVL YLQ+FAREF ++++V
Sbjct:    71 TSIYESLRTNLPRECMGFTDFPFVPRIHDISRDSRRYPSHREVLAYLQDFAREFKIEEMV 130

Query:   123 RLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGK 182
             R  TEV+    V + KW V+S+        E FDAVVVC+GHF+ P +A +PGI SWPGK
Sbjct:   131 RFETEVVCVEPV-NGKWSVRSKNSVGFAAHEIFDAVVVCSGHFTEPNVAHIPGIKSWPGK 189

Query:   183 QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQP-GY 241
             Q+HSHNYR+P PF ++VV++IG+YASG DI RD+A  AKEVHIASR+   +T++K P   
Sbjct:   190 QIHSHNYRVPGPFNNEVVVVIGNYASGADISRDIAKVAKEVHIASRASESDTYQKLPVPQ 249

Query:   242 DNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPL 301
             +N+W+HS ++ A++DG+++F+NG+VV AD I+HCTGYKY +PFLETNG + +++NRV PL
Sbjct:   250 NNLWVHSEIDFAHQDGSILFKNGKVVYADTIVHCTGYKYYFPFLETNGYININENRVEPL 309

Query:   302 YKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYS 361
             YKHVF P LAP LSF+G+P   I F  FE+QSKW+A+VLSGR++LPSQD+MMED+  +Y+
Sbjct:   310 YKHVFLPALAPSLSFIGLPGMAIQFVMFEIQSKWVAAVLSGRVILPSQDKMMEDIIEWYA 369

Query:   362 KLEASGKPKRYTHIMDYPQLIEYTDWLAAQCNCQGYEEWRKQMAYSAFKNAFITRPGTYR 421
              L+  G PKR+TH +      EY +W+A +C+C   E WR Q     F+   ++ P  YR
Sbjct:   370 TLDVLGIPKRHTHKLGKISC-EYLNWIAEECHCSPVENWRIQEVERGFQR-MVSHPEIYR 427

Query:   422 DEWDDEHLVAEANKDFIK 439
             DEWDD+ L+ EA KDF +
Sbjct:   428 DEWDDDDLMEEAYKDFAR 445

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0033506 "glucosinolate biosynthetic process from homomethionine" evidence=IMP

GO:0080102 "3-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080103 "4-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP;IDA

GO:0080104 "5-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080105 "6-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080106 "7-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080107 "8-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP;IDA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FWW9	GSXL2_ARATH	1, ., 8, ., -, ., -	0.6210	0.9843	0.9440	yes	no
Q9HFE4	FMO1_SCHPO	1, ., 1, 4, ., 1, 3, ., -	0.3018	0.8295	0.8277	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.01270057 hypothetical protein (459 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	446
PLN02172	461	PLN02172, PLN02172, flavin-containing monooxygenas	0.0
COG2072	443	COG2072, TrkA, Predicted flavoprotein involved in	3e-33
pfam00743	532	pfam00743, FMO-like, Flavin-binding monooxygenase-	3e-31
pfam13738	202	pfam13738, Pyr_redox_3, Pyridine nucleotide-disulp	8e-19
pfam00743	532	pfam00743, FMO-like, Flavin-binding monooxygenase-	2e-16
TIGR04018	316	TIGR04018, Bthiol_YpdA, putative bacillithiol syst	1e-15
TIGR04046	400	TIGR04046, MSMEG_0569_nitr, flavin-dependent oxido	9e-13
PRK07233	434	PRK07233, PRK07233, hypothetical protein; Provisio	4e-09
PRK12810	471	PRK12810, gltD, glutamate synthase subunit beta; R	1e-08
pfam13450	66	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-	1e-08
PRK11749	457	PRK11749, PRK11749, dihydropyrimidine dehydrogenas	7e-08
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	8e-08
PRK07208	479	PRK07208, PRK07208, hypothetical protein; Provisio	2e-07
PRK12814	652	PRK12814, PRK12814, putative NADPH-dependent gluta	5e-07
pfam01266	234	pfam01266, DAO, FAD dependent oxidoreductase	9e-07
TIGR00275	400	TIGR00275, TIGR00275, flavoprotein, HI0933 family	1e-06
COG0665	387	COG0665, DadA, Glycine/D-amino acid oxidases (deam	2e-06
PRK09853	1019	PRK09853, PRK09853, putative selenate reductase su	3e-06
PRK12771	564	PRK12771, PRK12771, putative glutamate synthase (N	4e-06
COG0493	457	COG0493, GltD, NADPH-dependent glutamate synthase	8e-06
TIGR03315	1012	TIGR03315, Se_ygfK, putative selenate reductase, Y	9e-06
TIGR01317	485	TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH	1e-05
COG1232	444	COG1232, HemY, Protoporphyrinogen oxidase [Coenzym	1e-05
COG1233	487	COG1233, COG1233, Phytoene dehydrogenase and relat	2e-05
TIGR01316	449	TIGR01316, gltA, glutamate synthase (NADPH), homot	2e-05
pfam00890	401	pfam00890, FAD_binding_2, FAD binding domain	3e-05
pfam01593	444	pfam01593, Amino_oxidase, Flavin containing amine	6e-05
PRK01747	662	PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-	7e-05
pfam13454	153	pfam13454, NAD_binding_9, FAD-NAD(P)-binding	1e-04
COG3349	485	COG3349, COG3349, Uncharacterized conserved protei	1e-04
COG0446	415	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent	2e-04
COG3380	331	COG3380, COG3380, Predicted NAD/FAD-dependent oxid	2e-04
COG4529	474	COG4529, COG4529, Uncharacterized protein conserve	2e-04
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	3e-04
pfam03486	405	pfam03486, HI0933_like, HI0933-like protein	4e-04
TIGR02733	492	TIGR02733, desat_CrtD, C-3',4' desaturase CrtD	4e-04
PRK04176	257	PRK04176, PRK04176, ribulose-1,5-biphosphate synth	6e-04
COG0654	387	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox	6e-04
TIGR01318	467	TIGR01318, gltD_gamma_fam, glutamate synthase smal	6e-04
PRK11883	451	PRK11883, PRK11883, protoporphyrinogen oxidase; Re	7e-04
PRK06292	460	PRK06292, PRK06292, dihydrolipoamide dehydrogenase	8e-04
PLN02487	569	PLN02487, PLN02487, zeta-carotene desaturase	9e-04
PRK12769	654	PRK12769, PRK12769, putative oxidoreductase Fe-S b	0.001
COG2081	408	COG2081, COG2081, Predicted flavoproteins [General	0.001
COG1231	450	COG1231, COG1231, Monoamine oxidase [Amino acid tr	0.001
TIGR02732	474	TIGR02732, zeta_caro_desat, 9,9'-di-cis-zeta-carot	0.002
PRK12834	549	PRK12834, PRK12834, putative FAD-binding dehydroge	0.003
COG0492	305	COG0492, TrxB, Thioredoxin reductase [Posttranslat	0.003
TIGR02734	502	TIGR02734, crtI_fam, phytoene desaturase	0.004

>gnl|CDD|215116 PLN02172, PLN02172, flavin-containing monooxygenase FMO GS-OX

 Score =  612 bits (1580), Expect = 0.0
 Identities = 254/438 (57%), Positives = 338/438 (77%), Gaps = 4/438 (0%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
           +HVAVIGAGAAGLV   EL REGHTVVV+E+ +QVGG W+YT ++ESDPL +DP R  VH
Sbjct: 11  QHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVH 70

Query: 63  SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
           SS+Y+SLR NLPRE MG++ +PFV R  + S D RRYP H EVL YLQ+FAREF ++++V
Sbjct: 71  SSVYESLRTNLPRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMV 130

Query: 123 RLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGK 182
           R  TEV+    V+  KW+V+S+      ++E FDAVVVCNGH++ P +A +PGI SWPGK
Sbjct: 131 RFETEVVRVEPVDG-KWRVQSKNSGGFSKDEIFDAVVVCNGHYTEPNVAHIPGIKSWPGK 189

Query: 183 QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQP-GY 241
           Q+HSHNYR+P+PF+++VV++IG++ASG DI RD+A  AKEVHIASR+   +T+EK P   
Sbjct: 190 QIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASESDTYEKLPVPQ 249

Query: 242 DNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPL 301
           +N+W+HS ++ A+EDG++VF+NG+VV AD I+HCTGYKY++PFLETNG + +D+NRV PL
Sbjct: 250 NNLWMHSEIDTAHEDGSIVFKNGKVVYADTIVHCTGYKYHFPFLETNGYMRIDENRVEPL 309

Query: 302 YKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYS 361
           YKHVFPP LAPGLSF+G+P   I F  FE+QSKW+A+VLSGR+ LPS+D+MMED+ A+Y+
Sbjct: 310 YKHVFPPALAPGLSFIGLPAMGIQFVMFEIQSKWVAAVLSGRVTLPSEDKMMEDINAWYA 369

Query: 362 KLEASGKPKRYTHIMDYPQLIEYTDWLAAQCNCQGYEEWRKQMAYSAFKNAFITRPGTYR 421
            LEA G PKRYTH +   Q  EY +W+A +C C   E WR Q     ++   +++P TYR
Sbjct: 370 SLEALGIPKRYTHKLGKIQ-SEYLNWIAEECGCPLVEHWRYQEVDRGYQR-LVSQPETYR 427

Query: 422 DEWDDEHLVAEANKDFIK 439
           DEWDD+ L+ EA +DF +
Sbjct: 428 DEWDDDDLMEEAYEDFAR 445

Length = 461

>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

 Score =  129 bits (327), Expect = 3e-33
 Identities = 70/227 (30%), Positives = 109/227 (48%), Gaps = 32/227 (14%)

Query: 5   VAVIGAGAAGLVVGHELLREGHT-VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHS 63
           VA+IGAG +GL   + L + G    V++EK + VGG+W Y             NRYP   
Sbjct: 11  VAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRY-------------NRYP--- 54

Query: 64  SLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVR 123
                LR++ P+ L+GF   PF             +    E+  Y++++  ++G+   +R
Sbjct: 55  ----GLRLDSPKWLLGFPFLPFRWD--------EAFAPFAEIKDYIKDYLEKYGLRFQIR 102

Query: 124 LHTEVLNARLVESNK-WKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGK 182
            +T V  A   E  K W V +   D    E T D VVV  GH S P +    G+D + G+
Sbjct: 103 FNTRVEVADWDEDTKRWTVTT--SDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGR 160

Query: 183 QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229
            +HS ++  P   + + V++IG  AS +DI  +LA     V ++ RS
Sbjct: 161 ILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRS 207

Length = 443

>gnl|CDD|109787 pfam00743, FMO-like, Flavin-binding monooxygenase-like

 Score =  125 bits (315), Expect = 3e-31
 Identities = 71/233 (30%), Positives = 116/233 (49%), Gaps = 25/233 (10%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
           + VAVIGAG +GL      L EG     +E+ + +GG W +T   E              
Sbjct: 2   KKVAVIGAGVSGLSSIKCCLEEGLEPTCFERSDDIGGLWRFTEHVEEG-----------R 50

Query: 63  SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
           +S+YKS+  N  +E+  F  +PF         D   +  + + L YL+ FA+ F + + +
Sbjct: 51  ASIYKSVVTNSSKEMSCFSDFPF-------PEDYPNFMHNSKFLEYLRMFAKHFDLLKYI 103

Query: 123 RLHTEVLNAR----LVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLA--QVPGI 176
           +  T V +         S +W+V + + +   E   FDAV+VC GH + P L     PGI
Sbjct: 104 QFKTTVCSVTKRPDFSTSGQWEVVT-EHEGKQESAVFDAVMVCTGHHTNPHLPLESFPGI 162

Query: 177 DSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229
           + + G+  HS +Y+ P  FQ + V++IG   SG DI  +L+  A +V +++R+
Sbjct: 163 NKFKGQYFHSRDYKHPEGFQGKRVLVIGLGNSGGDIAVELSRTAAQVFLSTRT 215

This family includes FMO proteins, cyclohexanone mono-oxygenase and a number of different mono-oxygenases. Length = 532

>gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase

 Score = 83.9 bits (208), Expect = 8e-19
 Identities = 51/230 (22%), Positives = 85/230 (36%), Gaps = 38/230 (16%)

Query: 6   AVIGAGAAGLVVGHELLREGHT-VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS 64
            V+GAGAAG+     LL  G   V++ ++G Q GG W                ++     
Sbjct: 1   LVVGAGAAGMAFADHLLDLGDAPVIIVDRGAQPGGHW---------------RKWYPFVR 45

Query: 65  LYKSLRVN-----LPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVD 119
           L++               +     P      E            E+  YL++ AR +G+ 
Sbjct: 46  LHQPSFFYGDFGMPDLNALSIDTSPKWDGKAE-------LASGAEIAAYLEDLARRYGL- 97

Query: 120 QVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSW 179
             +RL T V         ++ V+    + V      D VV   G FSVP+    PG D+ 
Sbjct: 98  -PIRLSTRVTAVERDG-GRFVVRLTDGETV----RADYVVDATGAFSVPKPPGFPGADA- 150

Query: 180 PGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229
             + +H  +       + + V +IG   + +D   +L    K+V   +R 
Sbjct: 151 --EGVHLVDVLERIDLKGKTVAVIGGGHTAIDAALNLLDLGKDVTWITRR 198

Length = 202

>gnl|CDD|109787 pfam00743, FMO-like, Flavin-binding monooxygenase-like

 Score = 81.0 bits (200), Expect = 2e-16
 Identities = 51/137 (37%), Positives = 77/137 (56%), Gaps = 9/137 (6%)

Query: 258 TVVFRNGRVVSA-DVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVFPPVLA-PGLS 315
           + +F +G V    DV++  TGY +++PFLE   +V V+ N++  LYK+VFPP L  P L+
Sbjct: 309 SAIFEDGTVEEDIDVVIFATGYTFSFPFLE-ESLVKVETNKIS-LYKYVFPPNLEKPTLA 366

Query: 316 FVGIPQKV-IPFPFFELQSKWIASVLSGRIVLPSQDEMMEDV-KAFYSKLEASGKPKRYT 373
            +G+ Q +    P  ELQ++W   V  G   LPS  +MME++ +    K++  G  +  T
Sbjct: 367 IIGLIQPLGSIIPTVELQARWAVRVFKGLCKLPSSSKMMEEITEKKEKKIKRFGFSQSST 426

Query: 374 HIMDYPQLIEYTDWLAA 390
              DY   I Y D LAA
Sbjct: 427 IQTDY---IAYMDELAA 440

This family includes FMO proteins, cyclohexanone mono-oxygenase and a number of different mono-oxygenases. Length = 532

>gnl|CDD|188533 TIGR04018, Bthiol_YpdA, putative bacillithiol system oxidoreductase, YpdA family

 Score = 76.8 bits (190), Expect = 1e-15
 Identities = 83/318 (26%), Positives = 138/318 (43%), Gaps = 69/318 (21%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS 64
           V +IGAG  GL    E  + G + ++ EKG  V  + IY              RYP + +
Sbjct: 2   VIIIGAGPCGLACAIEAQKAGLSYLIIEKGNLV--NSIY--------------RYPTNMT 45

Query: 65  LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRL 124
            + +       E +     PF++ N +        P   E L Y +  A  F ++  +RL
Sbjct: 46  FFST------SERLEIGGIPFISENPK--------PTRNEALEYYRRVAERFKLN--IRL 89

Query: 125 HTEVLNARLVESNKWKVKSRKKDDVVEEETFDA--VVVCNGHFSVPRLAQVPGIDSWPGK 182
           + EVL  +  +   ++V + K        T+ A  V+V  G++ +P L  VPG D  P  
Sbjct: 90  YEEVLKVKKTDGG-FEVTTEK-------GTYQAKNVIVATGYYDIPNLLNVPGEDL-P-- 138

Query: 183 QMH-SHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEK---- 237
               SH Y+  +P+  Q V+++G   S +D   +L     EV +  R   DE        
Sbjct: 139 --KVSHYYKEAHPYFGQKVVVVGGSNSAVDAALELYRKGAEVTMVHR--GDEVSSSVKYW 194

Query: 238 -QPGYDN--------MWLHSMVERANEDGTVVFR--NGRV--VSADVIMHCTGYKYNYPF 284
            +P  +N         + +S V+   ED +V     +G V  +  D +   TGY+ ++ F
Sbjct: 195 VRPDIENRIKEGSIKAYFNSRVKEITED-SVTLETPDGEVHTIPNDFVFALTGYRPDFEF 253

Query: 285 LETNGIVTVDDNRVGPLY 302
           LE+ G V +D++   P+Y
Sbjct: 254 LESLG-VELDEDTGIPVY 270

Members of this protein family, including YpdA from Bacillus subtilis, are apparent oxidoreductases present only in species with an active bacillithiol system. They have been suggested actually to be thiol disulfide oxidoreductases (TDOR), although the evidence is incomplete [Unknown function, Enzymes of unknown specificity]. Length = 316

>gnl|CDD|234447 TIGR04046, MSMEG_0569_nitr, flavin-dependent oxidoreductase, MSMEG_0569 family

 Score = 69.3 bits (170), Expect = 9e-13
 Identities = 75/252 (29%), Positives = 105/252 (41%), Gaps = 48/252 (19%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPN---RYPV 61
           V +IGAG AGL V + L + G   VV EK   V  SW      +S  L V PN   R P 
Sbjct: 3   VVIIGAGQAGLSVSYYLKQAGIDHVVLEK-HTVAHSW-RDERWDSFCL-VTPNWQCRLPG 59

Query: 62  HSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQV 121
           H                           Y+G+ D   +   +E++ YL  +AR F     
Sbjct: 60  HP--------------------------YDGT-DPDGFMVKDEIVAYLDGYARSFNPP-- 90

Query: 122 VRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGI-DSWP 180
           VR  TEV + R   +  ++V +          T D VV+  G + VP    +P + +  P
Sbjct: 91  VREGTEVTSLRKHGAGGFRVSTS-----AGAFTADQVVIATGGYHVPV---IPPLAERLP 142

Query: 181 G--KQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQ 238
               Q+HS  YR P+   D  V+++G   SG  I  DL    ++VH+A  S A       
Sbjct: 143 ADVLQLHSSEYRNPDQLPDGAVLVVGSGQSGCQIAEDLHLAGRKVHLAVGS-APRCARFY 201

Query: 239 PGYDNM-WLHSM 249
            G D + WL  M
Sbjct: 202 RGRDVVDWLDDM 213

Members of this protein family belong to a conserved seven-gene biosynthetic cluster found sparsely in Cyanobacteria, Proteobacteria, and Actinobacteria. Distant homologies to characterized proteins suggest that members are enzymes dependent on a flavinoid cofactor. Length = 400

>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional

 Score = 58.0 bits (141), Expect = 4e-09
 Identities = 15/36 (41%), Positives = 23/36 (63%)

Query: 4  HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
           +A++G G AGL   + L + GH V V+E  +Q+GG
Sbjct: 1  KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGG 36

Length = 434

>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed

 Score = 56.7 bits (138), Expect = 1e-08
 Identities = 17/35 (48%), Positives = 25/35 (71%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
           VAV+G+G AGL    +L R GH V V+E+ +++GG
Sbjct: 146 VAVVGSGPAGLAAADQLARAGHKVTVFERADRIGG 180

Length = 471

>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain

 Score = 50.9 bits (123), Expect = 1e-08
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 7  VIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETE 48
          ++GAG +GLV  + L + G  V+V EK +++GG   Y+    
Sbjct: 1  IVGAGLSGLVAAYLLAKRGKDVLVLEKRDRIGG-NAYSERDP 41

Length = 66

>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional

 Score = 54.0 bits (131), Expect = 7e-08
 Identities = 18/37 (48%), Positives = 25/37 (67%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
           + VAVIGAG AGL   H L R+G+ V ++E  ++ GG
Sbjct: 141 KKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGG 177

Length = 457

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 53.1 bits (128), Expect = 8e-08
 Identities = 62/311 (19%), Positives = 105/311 (33%), Gaps = 68/311 (21%)

Query: 4   HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHS 63
            V +IG G AGL     L R G  V + E+                       NR  +  
Sbjct: 1   DVVIIGGGPAGLAAAIRLARLGLKVALIEREGGTCY-----------------NRGCLPK 43

Query: 64  SLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVR 123
            L               +    +                   L   +   +EFGV+  V 
Sbjct: 44  KL-------------LLEVAEGLEL--------------AIGLALPEEVYKEFGVE--VL 74

Query: 124 LHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQ 183
           L TEV++         K    K  +   E T+D +++  G  + PR+  +PG++    + 
Sbjct: 75  LGTEVVDI----DRGEKTVVLKDVETGREITYDKLIIATG--ARPRIPGIPGVEVATLRG 128

Query: 184 MHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR------------SVA 231
           +   +  +      + V+++G    GL++   LA   KEV +  R            S A
Sbjct: 129 VIDSDEILELLELPKRVVVVGGGYIGLELAAALAKLGKEVTVVERRDRLLARADDEISAA 188

Query: 232 DETHEKQPGYDNMWLHSM-VERANEDGTVVFR---NGRVVSADVIMHCTGYKYNYPFLET 287
                ++       L  + V     DG VV     +G  + ADV++   G + N   LE 
Sbjct: 189 LLEKLEKLLLGVTVLLVVVVVVKVGDGKVVEVKLGDGEELDADVVLVAIGRRPNTELLEQ 248

Query: 288 NGIVTVDDNRV 298
            G+   +   +
Sbjct: 249 AGVELDERGYI 259

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional

 Score = 53.0 bits (128), Expect = 2e-07
 Identities = 18/37 (48%), Positives = 23/37 (62%)

Query: 3  RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
          + V +IGAG AGL   +ELL+ G+ V V E    VGG
Sbjct: 5  KSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGG 41

Length = 479

>gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase small subunit; Provisional

 Score = 51.7 bits (124), Expect = 5e-07
 Identities = 19/37 (51%), Positives = 26/37 (70%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
           + VA+IGAG AGL   + LLR+GH V +++  EQ GG
Sbjct: 194 KKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGG 230

Length = 652

>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase

 Score = 49.2 bits (118), Expect = 9e-07
 Identities = 47/208 (22%), Positives = 65/208 (31%), Gaps = 61/208 (29%)

Query: 4   HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS-------WIYTSETESDP----- 51
            V VIG G  GL   +EL R G +V + E+G+   G+              E  P     
Sbjct: 1   DVVVIGGGIVGLSTAYELARRGLSVTLLERGDLASGASGRNAGLLHPGLRKERAPLLARL 60

Query: 52  ----------------------------LGVDPNRYPVHSSLYKSLRVN-LPRELMG--- 79
                                       L  D         L  +LR   LP EL+    
Sbjct: 61  ALESRDLWRELIEELGIDCDFRRTGVLVLARDEAELDALRRLAAALRALGLPVELLDAEE 120

Query: 80  -FQAYPFVARNYEGSVDLRRYP--GHEEVLRYLQNFAREF---GVDQVVRLHTEVLNARL 133
             +  P ++    G +    YP  GH +  R L+  AR     GV+  +   TEV     
Sbjct: 121 LRELEPGLSPGIRGGL---FYPDGGHVDPARLLRALARAAEALGVE--ILEGTEVTGLE- 174

Query: 134 VESNKWKVKSRKKDDVVEEETFDAVVVC 161
            E     V++        E   D VV  
Sbjct: 175 REGGGVTVETED-----GEIRADKVVNA 197

This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234

>gnl|CDD|232901 TIGR00275, TIGR00275, flavoprotein, HI0933 family

 Score = 49.9 bits (120), Expect = 1e-06
 Identities = 40/182 (21%), Positives = 72/182 (39%), Gaps = 35/182 (19%)

Query: 6   AVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG--------GSWIYTSETESDPLGVDPN 57
            +IG GAAGL+      REG +V++ EK +++G        G    T+   +        
Sbjct: 1   IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEF---VA 57

Query: 58  RYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDL------RRYP---GHEEVLRY 108
            YP +    +S        L  F     +       ++L      R +P      +VL  
Sbjct: 58  YYPRNGKFLRSA-------LSRFSNKDLIDFFESLGLELKVEEDGRVFPCSDSAADVLDA 110

Query: 109 LQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVP 168
           L N  +E GV+  +  +++V + +  +   + V++        E   D V++  G  S P
Sbjct: 111 LLNELKELGVE--ILTNSKVKSIKKDD-GGFGVETSGG-----EYEADKVIIATGGLSYP 162

Query: 169 RL 170
           +L
Sbjct: 163 QL 164

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae [Unknown function, Enzymes of unknown specificity]. Length = 400

>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 15/38 (39%), Positives = 18/38 (47%)

Query: 3  RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40
            V +IG G  GL   + L   G  V V E GE  GG+
Sbjct: 5  MDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGA 42

Length = 387

>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 20/35 (57%), Positives = 23/35 (65%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
           VAVIGAG AGL   + L R GH V V+E+ E  GG
Sbjct: 542 VAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGG 576

Length = 1019

>gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional

 Score = 48.7 bits (117), Expect = 4e-06
 Identities = 18/37 (48%), Positives = 24/37 (64%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
           + VAVIG G AGL   + L R GH V ++E G ++GG
Sbjct: 138 KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGG 174

Length = 564

>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

 Score = 47.7 bits (114), Expect = 8e-06
 Identities = 19/35 (54%), Positives = 22/35 (62%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
           VAVIGAG AGL    +L R GH V V+E+    GG
Sbjct: 126 VAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGG 160

Length = 457

>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit

 Score = 47.9 bits (114), Expect = 9e-06
 Identities = 22/35 (62%), Positives = 25/35 (71%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
           VAVIGAG AGL  G+ L R GH V V+EK E+ GG
Sbjct: 540 VAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGG 574

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. Length = 1012

>gnl|CDD|162300 TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH/NADPH, small subunit

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 19/39 (48%), Positives = 27/39 (69%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43
           VAV+G+G AGL    +L R GHTV V+E+ ++ GG  +Y
Sbjct: 146 VAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMY 184

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. Length = 485

>gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism]

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 7/77 (9%)

Query: 3  RHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYP 60
            +A+IG G AGL   + L + G    V ++E  ++VGG  + T + +         R P
Sbjct: 1  MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGG-LLRTVKIDGFLF----ERGP 55

Query: 61 VHSSLYKSLRVNLPREL 77
           H    K   ++L +EL
Sbjct: 56 HHFLARKEEILDLIKEL 72

Length = 444

>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 18/40 (45%), Positives = 20/40 (50%)

Query: 1  MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40
              V VIGAG  GL     L R G  V V EK ++VGG 
Sbjct: 2  PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGR 41

Length = 487

>gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 20/39 (51%), Positives = 24/39 (61%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43
           VAVIGAG AGL    EL + GH+V V+E   + GG   Y
Sbjct: 136 VAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTY 174

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH [Amino acid biosynthesis, Glutamate family]. Length = 449

>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 17/36 (47%), Positives = 19/36 (52%)

Query: 4  HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
           V VIG+G AGL    E    G  V V EKG+  GG
Sbjct: 1  DVVVIGSGLAGLAAALEAAEAGLKVAVVEKGQPFGG 36

This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. Length = 401

>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase

 Score = 44.9 bits (106), Expect = 6e-05
 Identities = 29/110 (26%), Positives = 38/110 (34%), Gaps = 5/110 (4%)

Query: 13  AGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHS----SLYKS 68
           AGL    ELLR G  V V E  ++VGG  I T   +   + +    +        +L   
Sbjct: 2   AGLAAARELLRAGFDVTVLEARDRVGG-RIRTVRFDGFLIELGAQWFHGAYPNLLNLLLE 60

Query: 69  LRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGV 118
           L + L   L  F   PFV   Y G             L  L     E  +
Sbjct: 61  LGLELGLLLFPFPGDPFVRLKYRGGPYPDLPGDLPPPLFLLLRSLLELEL 110

This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins. Length = 444

>gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

 Score = 44.8 bits (107), Expect = 7e-05
 Identities = 14/37 (37%), Positives = 17/37 (45%)

Query: 2   FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG 38
            R  A+IG G AG  +   L R G  V +YE  E   
Sbjct: 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADEAPA 296

Length = 662

>gnl|CDD|222141 pfam13454, NAD_binding_9, FAD-NAD(P)-binding

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 39/174 (22%), Positives = 55/174 (31%), Gaps = 35/174 (20%)

Query: 6   AVIGAGAAGLVVGHELLRE----GHTVVVYEKGE-QVGGSWIYTSE-------TESDPLG 53
           A+IGAG  GL V   LLR        + V++      GG W  T +       T +  + 
Sbjct: 1   AIIGAGPRGLSVLERLLRRAPDRPLDITVFDPSPPGAGGVW-RTDQPPQLLLNTPAAQMS 59

Query: 54  VDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGH--EEVLRYLQN 111
           + P+  P   S  + L      E  G     F  R          + G         L  
Sbjct: 60  LFPDDPP---SFLEWLEAQ-GEEEAGLDPDDFPPR--------ALF-GEYLRWRFSELLA 106

Query: 112 FAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHF 165
            A       V     EV++ R      + V       +      DAVV+  GH 
Sbjct: 107 RAPAGV--TVRVHRAEVVDLR-PRGGGYTVTLADGATL----RADAVVLATGHG 153

Length = 153

>gnl|CDD|225885 COG3349, COG3349, Uncharacterized conserved protein [Function unknown]

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 3/42 (7%)

Query: 4  HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG---SWI 42
           VA+ GAG AGL   +EL   G+ V +YE  +++GG   SW 
Sbjct: 2  RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWR 43

Length = 485

>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40
           + V V+GAG  GL       + G  V + E  +++GG 
Sbjct: 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQ 174

Length = 415

>gnl|CDD|225915 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
          +A++GAG AGL   + L   G  V V+EKG  VGG
Sbjct: 4  IAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGG 38

Length = 331

>gnl|CDD|226906 COG4529, COG4529, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 47/248 (18%), Positives = 79/248 (31%), Gaps = 37/248 (14%)

Query: 1   MFRHVAVIGAGAAGLVVGHELLR----EGHTVVVYEKGEQVGGSWIYTSETESDPLGVDP 56
           MF+ VA+IG G +G+ +   LL+     G  + ++E     G    Y++E     L V  
Sbjct: 1   MFK-VAIIGGGFSGIYMAAHLLKSPRPSGL-ISIFEPRPNFGQGIAYSTEEPEHLLNVPA 58

Query: 57  NRYPVHSS---------LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLR 107
            R    +          L K L+     E +      +  R          Y     +  
Sbjct: 59  ARMSAFAPDIPQDFVRWLQKQLQRYRDPEDINHDGQAYPPRR-----LFGEY-----LRE 108

Query: 108 YLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV 167
            L          +V  +  E  + R  ++N         D     E  D +V+  GH   
Sbjct: 109 QLAALLARGRQTRVRTIREEATSVRQ-DTNAGGYLVTTAD--GPSEIADIIVLATGH--S 163

Query: 168 PRLAQVPGIDSWPGKQMHSHNYRIPNPF----QDQVVILIGHYASGLDIKRDL--AGFAK 221
              A     D     ++ +  Y   N       D  V+++G   + +D    L   G   
Sbjct: 164 APPADPAARDLKGSPRLIADPYP-ANALDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKG 222

Query: 222 EVHIASRS 229
            +   SR 
Sbjct: 223 PITAISRR 230

Length = 474

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 35/169 (20%), Positives = 55/169 (32%), Gaps = 35/169 (20%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG-----GSWIYTSETES-----DPLGV 54
           V ++GAG AG      L + G  V+V EKG + G     G  +     E      D    
Sbjct: 6   VVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIE 65

Query: 55  DPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAR 114
                       + + + +P                EG +  R      +  ++L   A 
Sbjct: 66  RKVTGARIYFPGEKVAIEVPVG--------------EGYIVDRA-----KFDKWLAERAE 106

Query: 115 EFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNG 163
           E G +  +   T V    + E +   V  R  DD V       V+  +G
Sbjct: 107 EAGAE--LYPGTRV-TGVIREDDGVVVGVRAGDDEV---RAKVVIDADG 149

Length = 396

>gnl|CDD|217590 pfam03486, HI0933_like, HI0933-like protein

 Score = 42.2 bits (100), Expect = 4e-04
 Identities = 46/189 (24%), Positives = 69/189 (36%), Gaps = 41/189 (21%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSE------TESDPLGVDP 56
             V VIG GAAGL+      + G  V++ +KG+++ G  I  S       T S       
Sbjct: 1   YDVIVIGGGAAGLMAAISAAKRGRRVLLIDKGKKL-GRKILISGGGRCNVTNSVEP---D 56

Query: 57  N---RYPVHSS-LYKSLRVNLPRELMGFQAYPFVARN----YEGSVDLRRYP---GHEEV 105
               RYP +   L  +L    P + +      F         E     R +P      ++
Sbjct: 57  EFLSRYPGNPHFLKSALSRFTPWDFIA-----FFEELGVPLKEED-HGRLFPVSDKASDI 110

Query: 106 LRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKS----RKKDDVVEEETFDAVVVC 161
           +  L N  +E GV   +R  T VL          +       R   D  EE   D++V+ 
Sbjct: 111 VDALLNELKELGV--KIRTRTRVL--------SVEKDDDGRFRVDTDGGEELEADSLVLA 160

Query: 162 NGHFSVPRL 170
            G  S P+ 
Sbjct: 161 TGGLSWPKT 169

Length = 405

>gnl|CDD|233987 TIGR02733, desat_CrtD, C-3',4' desaturase CrtD

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 16/36 (44%), Positives = 20/36 (55%)

Query: 4  HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
           V VIGAG AGL     L + G+ V + E+  Q GG
Sbjct: 3  SVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGG 38

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 492

>gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase; Provisional

 Score = 40.9 bits (97), Expect = 6e-04
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
          VA++GAG +GL   + L + G  V V+E+    GG
Sbjct: 28 VAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGG 62

Length = 257

>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 3  RHVAVIGAGAAGLVVGHELLREGHTVVVYEK 33
            VA++GAG AGL +   L R G  V + E+
Sbjct: 3  LDVAIVGAGPAGLALALALARAGLDVTLLER 33

Length = 387

>gnl|CDD|130385 TIGR01318, gltD_gamma_fam, glutamate synthase small subunit family protein, proteobacterial

 Score = 41.7 bits (98), Expect = 6e-04
 Identities = 18/35 (51%), Positives = 23/35 (65%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
           VAVIGAG AGL     L R G  VVV+++  ++GG
Sbjct: 144 VAVIGAGPAGLACADILARAGVQVVVFDRHPEIGG 178

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. Length = 467

>gnl|CDD|237009 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed

 Score = 41.4 bits (98), Expect = 7e-04
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 3  RHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYT 44
          + VA+IG G  GL   + L ++G    + + E  +++GG  I T
Sbjct: 1  KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGK-IQT 43

Length = 451

>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated

 Score = 41.3 bits (98), Expect = 8e-04
 Identities = 63/354 (17%), Positives = 115/354 (32%), Gaps = 99/354 (27%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG-----------SWIYTSE-----TE 48
           V VIGAG AG V      + G  V + EKG  +GG           + I  +E       
Sbjct: 6   VIVIGAGPAGYVAARRAAKLGKKVALIEKGP-LGGTCLNVGCIPSKALIAAAEAFHEAKH 64

Query: 49  SDPLGVDPNRYPVHSSLYKSLRVNLPRELM--------GFQAYPFVARNYEGSVDLRRYP 100
           ++  G+               +++  +++M         F     V    E    + +  
Sbjct: 65  AEEFGIHA----------DGPKIDF-KKVMARVRRERDRFVG--GVVEGLEKKPKIDKIK 111

Query: 101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV 160
           G                             AR V+ N  +V         E      +V+
Sbjct: 112 GT----------------------------ARFVDPNTVEVNG-------ERIEAKNIVI 136

Query: 161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYR-IPNPFQDQVVILIGHYASGLDIKRDLAGF 219
             G  S  R+  +PG+    G ++ + +     +     + + IG    GL++ + L+  
Sbjct: 137 ATG--S--RVPPIPGVWLILGDRLLTSDDAFELDKLPKSLAV-IGGGVIGLELGQALSRL 191

Query: 220 AKEVHIASRS----------VADETHEKQPGYDNMWLHS---MVERANEDGTVVFRNG-- 264
             +V +  R           V+ +  +       + L +    VE++ ++       G  
Sbjct: 192 GVKVTVFERGDRILPLEDPEVSKQAQKILSKEFKIKLGAKVTSVEKSGDEKVEELEKGGK 251

Query: 265 -RVVSADVIMHCTGYKYNYPFL--ETNGIVTVDDNR--VGPLYKHVFPPVLAPG 313
              + AD ++  TG + N   L  E  GI   +  R  V    +   P + A G
Sbjct: 252 TETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGIYAAG 305

Length = 460

>gnl|CDD|215268 PLN02487, PLN02487, zeta-carotene desaturase

 Score = 41.3 bits (97), Expect = 9e-04
 Identities = 18/35 (51%), Positives = 23/35 (65%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
           VA+IGAG AG+    ELL +GH V +YE    +GG
Sbjct: 78  VAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGG 112

Length = 569

>gnl|CDD|183733 PRK12769, PRK12769, putative oxidoreductase Fe-S binding subunit; Reviewed

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 17/37 (45%), Positives = 23/37 (62%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
           + VA+IGAG AGL     L R G  V VY++  ++GG
Sbjct: 328 KRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGG 364

Length = 654

>gnl|CDD|224992 COG2081, COG2081, Predicted flavoproteins [General function prediction only]

 Score = 40.6 bits (96), Expect = 0.001
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 1  MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG 38
              V +IG G AGL+      + G  V++ +KG ++G
Sbjct: 2  ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLG 39

Length = 408

>gnl|CDD|224152 COG1231, COG1231, Monoamine oxidase [Amino acid transport and metabolism]

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 15/35 (42%), Positives = 23/35 (65%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
          V ++GAG AGL   +EL + G+ V + E  ++VGG
Sbjct: 10 VIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGG 44

Length = 450

>gnl|CDD|131779 TIGR02732, zeta_caro_desat, 9,9'-di-cis-zeta-carotene desaturase

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 3/41 (7%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG---GSWI 42
          VA++GAG AGL    EL+  GH V +YE    +G   GSW+
Sbjct: 2  VAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWV 42

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum. Length = 474

>gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed

 Score = 39.9 bits (94), Expect = 0.003
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEK-GEQ-VGG 39
          V V+GAG AGLV   EL   G  V++ ++  E  +GG
Sbjct: 7  VIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGG 43

Length = 549

>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 57/265 (21%), Positives = 96/265 (36%), Gaps = 70/265 (26%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS 64
           V +IG G AGL       R G  VV+  +G + GG    T++ E+ P G           
Sbjct: 6   VIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYP-GFPGG------- 57

Query: 65  LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRL 124
                   L  ELM                        E++    + F  E   D+V ++
Sbjct: 58  -------ILGPELM------------------------EQMKEQAEKFGVEIVEDEVEKV 86

Query: 125 HTEVLNARLVESNKWKVKSRKKDDVVEEETF--DAVVVCNGHFSVPRLAQVPGIDSWPGK 182
                    +E   +KVK        ++ T+   AV++  G  +  R   VPG + + GK
Sbjct: 87  E--------LEGGPFKVK-------TDKGTYEAKAVIIATG--AGARKLGVPGEEEFEGK 129

Query: 183 QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYD 242
            +          F+ + V++IG   S ++    L+  AK+V +  R   +   E+     
Sbjct: 130 GVSYCATCDGF-FKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRR-DEFRAEEI---- 183

Query: 243 NMWLHSMVERANEDGTVVFRNGRVV 267
                 +VER  ++  +      VV
Sbjct: 184 ------LVERLKKNVKIEVLTNTVV 202

Length = 305

>gnl|CDD|233988 TIGR02734, crtI_fam, phytoene desaturase

 Score = 39.2 bits (92), Expect = 0.004
 Identities = 14/35 (40%), Positives = 18/35 (51%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
            VIGAG  GL +   L   G  V V E+ ++ GG
Sbjct: 1  AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGG 35

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 502

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	446
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	100.0
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	100.0
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	100.0
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	100.0
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	100.0
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	100.0
PRK10262	321	thioredoxin reductase; Provisional	100.0
PLN02507	499	glutathione reductase	100.0
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	100.0
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	100.0
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	100.0
PRK06116	450	glutathione reductase; Validated	100.0
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	100.0
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	100.0
PRK14694	468	putative mercuric reductase; Provisional	100.0
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	100.0
PTZ00058	561	glutathione reductase; Provisional	100.0
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK06370	463	mercuric reductase; Validated	100.0
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	99.98
PRK14727	479	putative mercuric reductase; Provisional	99.98
PRK07846	451	mycothione reductase; Reviewed	99.98
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	99.98
TIGR02053	463	MerA mercuric reductase. This model represents the	99.98
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	99.97
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	99.97
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	99.97
PRK13748	561	putative mercuric reductase; Provisional	99.97
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	99.97
PLN02546	558	glutathione reductase	99.97
PRK07845	466	flavoprotein disulfide reductase; Reviewed	99.97
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	99.97
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	99.97
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	99.97
PTZ00052	499	thioredoxin reductase; Provisional	99.97
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	99.97
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	99.97
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	99.97
PRK13512	438	coenzyme A disulfide reductase; Provisional	99.97
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	99.97
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	99.97
PTZ00153	659	lipoamide dehydrogenase; Provisional	99.97
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	99.97
PRK09564	444	coenzyme A disulfide reductase; Reviewed	99.97
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	99.96
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	99.96
PRK14989	847	nitrite reductase subunit NirD; Provisional	99.96
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	99.96
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	99.96
PRK12831	464	putative oxidoreductase; Provisional	99.96
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	99.96
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	99.96
PRK12779	944	putative bifunctional glutamate synthase subunit b	99.95
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	99.95
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	99.95
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	99.95
PRK12770	352	putative glutamate synthase subunit beta; Provisio	99.95
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	99.95
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	99.94
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	99.94
PRK12814	652	putative NADPH-dependent glutamate synthase small	99.94
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	99.94
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	99.93
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	99.93
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	99.93
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	99.93
PRK13984	604	putative oxidoreductase; Provisional	99.92
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	99.92
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	99.92
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	99.92
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	99.91
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	99.91
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	99.91
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	99.91
PLN02852	491	ferredoxin-NADP+ reductase	99.9
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	99.9
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	99.89
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	99.87
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	99.86
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	99.86
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	99.75
PTZ00188	506	adrenodoxin reductase; Provisional	99.74
PRK06567	1028	putative bifunctional glutamate synthase subunit b	99.73
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	99.71
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	99.69
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	99.67
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	99.66
PRK09897	534	hypothetical protein; Provisional	99.6
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	99.59
COG2081	408	Predicted flavoproteins [General function predicti	99.59
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	99.58
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	99.51
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.45
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	99.44
KOG2755	334	consensus Oxidoreductase [General function predict	99.34
PRK06847	375	hypothetical protein; Provisional	99.34
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.31
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	99.29
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	99.27
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.27
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.26
PRK08244	493	hypothetical protein; Provisional	99.25
PRK10157	428	putative oxidoreductase FixC; Provisional	99.24
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	99.22
PRK06834	488	hypothetical protein; Provisional	99.2
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	99.2
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.19
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	99.18
PRK06185	407	hypothetical protein; Provisional	99.17
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	99.17
PLN02463	447	lycopene beta cyclase	99.17
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.17
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	99.16
PRK10015	429	oxidoreductase; Provisional	99.16
PRK11445	351	putative oxidoreductase; Provisional	99.16
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.16
PRK08163	396	salicylate hydroxylase; Provisional	99.15
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	99.15
PRK07045	388	putative monooxygenase; Reviewed	99.14
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	99.14
TIGR00275	400	flavoprotein, HI0933 family. The model when search	99.14
PRK09126	392	hypothetical protein; Provisional	99.13
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	99.12
PRK08013	400	oxidoreductase; Provisional	99.12
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.12
PRK06184	502	hypothetical protein; Provisional	99.12
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	99.12
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	99.11
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	99.11
PRK06753	373	hypothetical protein; Provisional	99.11
PRK07588	391	hypothetical protein; Provisional	99.1
PRK06126	545	hypothetical protein; Provisional	99.1
PRK07538	413	hypothetical protein; Provisional	99.1
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.09
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	99.09
PRK07236	386	hypothetical protein; Provisional	99.09
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.09
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	99.07
PRK06475	400	salicylate hydroxylase; Provisional	99.07
PRK07190	487	hypothetical protein; Provisional	99.06
PLN02697	529	lycopene epsilon cyclase	99.06
PRK08132	547	FAD-dependent oxidoreductase; Provisional	99.06
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	99.05
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	99.03
PLN02661	357	Putative thiazole synthesis	99.03
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.02
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	99.02
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	99.0
PRK05868	372	hypothetical protein; Validated	99.0
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.0
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.99
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.97
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	98.97
PRK06996	398	hypothetical protein; Provisional	98.96
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	98.96
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	98.96
COG0579	429	Predicted dehydrogenase [General function predicti	98.95
PRK11728	393	hydroxyglutarate oxidase; Provisional	98.95
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.94
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.93
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	98.92
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	98.91
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	98.89
PRK08274	466	tricarballylate dehydrogenase; Validated	98.88
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	98.88
PRK08294	634	phenol 2-monooxygenase; Provisional	98.87
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	98.86
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.85
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.84
PLN02985	514	squalene monooxygenase	98.83
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.82
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.82
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.82
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.81
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	98.81
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.8
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.8
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.78
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	98.78
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	98.77
PRK07121	492	hypothetical protein; Validated	98.77
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	98.75
TIGR02053	463	MerA mercuric reductase. This model represents the	98.73
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.73
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.73
PRK13339	497	malate:quinone oxidoreductase; Reviewed	98.72
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.72
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.71
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.71
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.71
PRK08401	466	L-aspartate oxidase; Provisional	98.71
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	98.7
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.7
PRK06116	450	glutathione reductase; Validated	98.7
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	98.68
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.67
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	98.67
PTZ00383	497	malate:quinone oxidoreductase; Provisional	98.67
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	98.66
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.65
PRK06370	463	mercuric reductase; Validated	98.65
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.65
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	98.64
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.64
PRK05257	494	malate:quinone oxidoreductase; Validated	98.63
PRK07804	541	L-aspartate oxidase; Provisional	98.63
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.63
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.63
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	98.62
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	98.62
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	98.61
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.61
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.59
PRK07846	451	mycothione reductase; Reviewed	98.59
PRK06175	433	L-aspartate oxidase; Provisional	98.59
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.59
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	98.59
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.59
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.58
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	98.58
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	98.58
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	98.57
PRK08275	554	putative oxidoreductase; Provisional	98.56
PLN02507	499	glutathione reductase	98.56
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.56
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	98.56
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.55
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.55
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.55
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.55
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.54
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.53
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	98.53
PLN02464	627	glycerol-3-phosphate dehydrogenase	98.52
PRK08071	510	L-aspartate oxidase; Provisional	98.52
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.51
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.51
PRK07208	479	hypothetical protein; Provisional	98.5
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	98.5
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	98.5
PTZ00367	567	squalene epoxidase; Provisional	98.5
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	98.49
PTZ00058	561	glutathione reductase; Provisional	98.49
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.49
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.49
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.49
PRK14694	468	putative mercuric reductase; Provisional	98.48
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	98.48
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.48
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.48
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.48
PRK12839	572	hypothetical protein; Provisional	98.47
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.47
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	98.47
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	98.46
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	98.46
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	98.45
PRK14727	479	putative mercuric reductase; Provisional	98.44
COG2907	447	Predicted NAD/FAD-binding protein [General functio	98.44
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	98.44
PLN02815	594	L-aspartate oxidase	98.44
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	98.44
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	98.43
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	98.42
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	98.42
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.4
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.4
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	98.4
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	98.39
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	98.39
PRK13748	561	putative mercuric reductase; Provisional	98.39
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	98.39
PRK11883	451	protoporphyrinogen oxidase; Reviewed	98.37
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	98.37
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.37
PTZ00052	499	thioredoxin reductase; Provisional	98.36
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	98.36
PRK07395	553	L-aspartate oxidase; Provisional	98.36
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	98.35
PRK07512	513	L-aspartate oxidase; Provisional	98.35
PTZ00153	659	lipoamide dehydrogenase; Provisional	98.35
PLN02546	558	glutathione reductase	98.34
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.33
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	98.32
PRK09077	536	L-aspartate oxidase; Provisional	98.32
PLN02268	435	probable polyamine oxidase	98.31
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	98.31
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	98.29
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.28
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	98.27
PRK07233	434	hypothetical protein; Provisional	98.27
COG3349	485	Uncharacterized conserved protein [Function unknow	98.27
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	98.26
PRK12416	463	protoporphyrinogen oxidase; Provisional	98.26
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	98.25
PRK10262	321	thioredoxin reductase; Provisional	98.24
PLN02576	496	protoporphyrinogen oxidase	98.22
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	98.2
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	98.19
PLN02568	539	polyamine oxidase	98.17
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	98.16
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.15
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	98.14
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.11
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	98.1
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	98.08
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	98.07
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	98.07
PLN02676	487	polyamine oxidase	98.07
PLN02529	738	lysine-specific histone demethylase 1	98.06
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	98.02
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	98.01
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.01
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	98.01
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	97.99
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	97.98
PRK13977	576	myosin-cross-reactive antigen; Provisional	97.97
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.96
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	97.95
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	97.94
PLN02487	569	zeta-carotene desaturase	97.93
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.93
PLN02328	808	lysine-specific histone demethylase 1 homolog	97.91
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.84
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	97.84
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	97.83
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	97.83
PLN02612	567	phytoene desaturase	97.81
PRK12831	464	putative oxidoreductase; Provisional	97.78
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	97.77
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.77
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	97.76
PLN02976	1713	amine oxidase	97.74
PLN03000	881	amine oxidase	97.73
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	97.71
KOG2852	380	consensus Possible oxidoreductase [General functio	97.68
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	97.68
COG2081	408	Predicted flavoproteins [General function predicti	97.67
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	97.64
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	97.63
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.62
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.62
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	97.55
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.55
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	97.51
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	97.49
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.48
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	97.46
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	97.45
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.45
PRK12779	944	putative bifunctional glutamate synthase subunit b	97.43
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.41
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.4
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.35
KOG2853	509	consensus Possible oxidoreductase [General functio	97.31
PRK06847	375	hypothetical protein; Provisional	97.29
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	97.28
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	97.28
PRK06753	373	hypothetical protein; Provisional	97.26
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.25
PLN02463	447	lycopene beta cyclase	97.23
PRK07236	386	hypothetical protein; Provisional	97.22
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	97.22
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	97.21
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	97.19
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	97.15
KOG2960	328	consensus Protein involved in thiamine biosynthesi	97.14
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	97.13
PRK05868	372	hypothetical protein; Validated	97.08
PRK02106	560	choline dehydrogenase; Validated	97.07
PLN02852	491	ferredoxin-NADP+ reductase	97.07
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	97.06
COG3573	552	Predicted oxidoreductase [General function predict	97.05
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	97.04
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	97.04
PRK07588	391	hypothetical protein; Provisional	97.03
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	97.03
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	97.02
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	97.01
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	96.98
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	96.97
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	96.97
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	96.94
PRK08163	396	salicylate hydroxylase; Provisional	96.9
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	96.9
PRK13984	604	putative oxidoreductase; Provisional	96.89
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	96.88
PLN02661	357	Putative thiazole synthesis	96.87
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	96.86
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	96.86
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	96.85
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	96.83
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	96.82
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	96.81
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.8
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	96.78
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	96.77
KOG2755	334	consensus Oxidoreductase [General function predict	96.74
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	96.73
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	96.72
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	96.7
PRK06834	488	hypothetical protein; Provisional	96.64
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	96.62
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.61
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	96.6
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.6
PRK09126	392	hypothetical protein; Provisional	96.59
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	96.58
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	96.54
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	96.52
PTZ00188	506	adrenodoxin reductase; Provisional	96.47
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	96.45
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	96.45
PRK06567	1028	putative bifunctional glutamate synthase subunit b	96.38
PLN02697	529	lycopene epsilon cyclase	96.37
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	96.36
PRK07045	388	putative monooxygenase; Reviewed	96.35
PRK06184	502	hypothetical protein; Provisional	96.33
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	96.32
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	96.3
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	96.27
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	96.27
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	96.26
PLN02785	587	Protein HOTHEAD	96.25
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	96.25
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	96.23
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.23
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	96.21
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	96.19
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	96.16
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	96.04
PRK07190	487	hypothetical protein; Provisional	96.0
PRK09897	534	hypothetical protein; Provisional	95.99
PRK08013	400	oxidoreductase; Provisional	95.98
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	95.98
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	95.98
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	95.91
PRK08244	493	hypothetical protein; Provisional	95.89
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.86
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	95.84
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	95.79
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	95.79
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	95.78
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	95.78
PRK10157	428	putative oxidoreductase FixC; Provisional	95.77
PRK06475	400	salicylate hydroxylase; Provisional	95.68
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	95.68
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	95.66
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	95.64
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.56
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	95.55
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	95.49
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	95.49
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	95.48
PRK06719	157	precorrin-2 dehydrogenase; Validated	95.45
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	95.44
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	95.37
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	95.35
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	95.33
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	95.32
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	95.23
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	95.16
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	95.15
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	95.14
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	95.14
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	95.13
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	95.12
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	95.11
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	95.09
PRK07538	413	hypothetical protein; Provisional	95.08
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	95.04
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	95.02
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	94.98
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.97
PRK11445	351	putative oxidoreductase; Provisional	94.97
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	94.92
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	94.89
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	94.82
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	94.78
PRK06996	398	hypothetical protein; Provisional	94.77
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	94.73
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.69
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.68
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	94.67
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.64
PRK04148	134	hypothetical protein; Provisional	94.62
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.59
COG0579	429	Predicted dehydrogenase [General function predicti	94.58
TIGR00275	400	flavoprotein, HI0933 family. The model when search	94.54
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	94.53
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.51
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	94.51
PRK06719	157	precorrin-2 dehydrogenase; Validated	94.51
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	94.5
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	94.36
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	94.35
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	94.3
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	94.27
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	94.25

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=100.00  E-value=1.7e-85  Score=653.36  Aligned_cols=437  Identities=58%  Similarity=1.062  Sum_probs=395.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|||||||+|||+||++|++.|++|+|||+++.+||+|++.+....++.++.|.....++++|++|++|+|+..|+|+
T Consensus        10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f~   89 (461)
T PLN02172         10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGYR   89 (461)
T ss_pred             CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccCC
Confidence            58999999999999999999999999999999999999999988777777788887777889999999999999999999


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                      |||+++...+...+.+.||++.++.+||++|++++++..+|+|+++|++|++.+ +.|+|++.++.+...+..||+||||
T Consensus        90 dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~-~~w~V~~~~~~~~~~~~~~d~VIvA  168 (461)
T PLN02172         90 DFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD-GKWRVQSKNSGGFSKDEIFDAVVVC  168 (461)
T ss_pred             CCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC-CeEEEEEEcCCCceEEEEcCEEEEe
Confidence            999976422222346789999999999999999999999999999999999876 7899998765433446789999999


Q ss_pred             cCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCccccccCC-C
Q 013303          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQP-G  240 (446)
Q Consensus       162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~~~~~~~~-~  240 (446)
                      ||+++.|++|.+||++.|+|.++|++.|+.++.|+||+|+|||+|.||+|+|.+|+..+++|++++|+.......++. .
T Consensus       169 tG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~~~~~~~~~~  248 (461)
T PLN02172        169 NGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASESDTYEKLPVP  248 (461)
T ss_pred             ccCCCCCcCCCCCCcccCCceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeeccccccccCcCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999976532233332 2


Q ss_pred             CCCeeeccceeEEccCCcEEecCCcEEeecEEEEecCccCCCCCCCCCCeeeeCCCCcccccccccCCCCCCCeEEecCC
Q 013303          241 YDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIP  320 (446)
Q Consensus       241 ~~~v~~~~~v~~i~~~~~v~~~dG~~~~~D~vi~atG~~~~~~~l~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~  320 (446)
                      ..++..++.|..+.+++.|+|+||+++++|.||+||||++++|||+..+.+.++++.+.|||+|+|++...|+|+|||++
T Consensus       249 ~~~v~~~~~I~~~~~~g~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~~~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~  328 (461)
T PLN02172        249 QNNLWMHSEIDTAHEDGSIVFKNGKVVYADTIVHCTGYKYHFPFLETNGYMRIDENRVEPLYKHVFPPALAPGLSFIGLP  328 (461)
T ss_pred             CCceEECCcccceecCCeEEECCCCCccCCEEEECCcCCccccccCcccceeeCCCcchhhHHhhcCCCCCCcEEEEecc
Confidence            34677788888887777799999999999999999999999999998888889999998999999999856999999999


Q ss_pred             CccCchhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHcCCCCcceeecCCcchhHHHHHHHHHCCCCCchHH
Q 013303          321 QKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYSKLEASGKPKRYTHIMDYPQLIEYTDWLAAQCNCQGYEEW  400 (446)
Q Consensus       321 ~~~~~~~~~~~qa~~~a~~l~g~~~lp~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~l~~~~g~~~~~~~  400 (446)
                      ..+.+++++|+||+|+|++|+|+..|||.++|+++++++++.+++.+.+.|++|.+++ .+++|+|+||+++|+++.++|
T Consensus       329 ~~~~~f~~~E~Qa~~~a~v~sG~~~LPs~~~m~~~~~~~~~~~~~~g~~~r~~h~~~~-~~~~y~~~la~~~g~~~~~~~  407 (461)
T PLN02172        329 AMGIQFVMFEIQSKWVAAVLSGRVTLPSEDKMMEDINAWYASLEALGIPKRYTHKLGK-IQSEYLNWIAEECGCPLVEHW  407 (461)
T ss_pred             ccccCchhHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHHHHhcCCCCceeEEcCc-cHHHHHHHHHHHhCCCCCHHH
Confidence            8899999999999999999999999999999999999999988888888899999876 699999999999999999999


Q ss_pred             HHHHHHHHHhhhcccCCcccCCcCCCHHHHHHHHHHHhhhh
Q 013303          401 RKQMAYSAFKNAFITRPGTYRDEWDDEHLVAEANKDFIKYT  441 (446)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~yr~~~~~~~~~~~~~~~~~~~~  441 (446)
                      +++||..+.+.++ .++++||+.|.+++..+++.++|.++.
T Consensus       408 ~~~~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~~~~~~~~~  447 (461)
T PLN02172        408 RYQEVDRGYQRLV-SQPETYRDEWDDDDLMEEAYEDFARKK  447 (461)
T ss_pred             HHHHHHHHHHHHH-hCHHhhccccccccceeecccccceEE
Confidence            9999999999998 999999999999999999999988654

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=100.00  E-value=4.1e-73  Score=571.07  Aligned_cols=400  Identities=39%  Similarity=0.708  Sum_probs=273.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      +|+|||||||++||++|++|++.|++++|||+++.+||+|++.+....           -.+++|+++.+|+|+.+|+|+
T Consensus         1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~-----------g~~~~y~sl~~n~sk~~~~fs   69 (531)
T PF00743_consen    1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPED-----------GRSSVYDSLHTNTSKEMMAFS   69 (531)
T ss_dssp             --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCC-----------SEGGGSTT-B-SS-GGGSCCT
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCC-----------CccccccceEEeeCchHhcCC
Confidence            489999999999999999999999999999999999999998643221           146799999999999999999


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCC----CceEEEEEeCCCceEEEEEcE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES----NKWKVKSRKKDDVVEEETFDA  157 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~----~~~~v~~~~~~~~~~~~~~d~  157 (446)
                      |||+++.       .+.||++.++.+||++|+++|+|.++|+||++|++|++.++    ++|+|++++ ++..++..||+
T Consensus        70 dfp~p~~-------~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~-~g~~~~~~fD~  141 (531)
T PF00743_consen   70 DFPFPED-------YPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTEN-DGKEETEEFDA  141 (531)
T ss_dssp             TS-HCCC-------CSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETT-TTEEEEEEECE
T ss_pred             CcCCCCC-------CCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeec-CCeEEEEEeCe
Confidence            9999876       78899999999999999999999999999999999998753    579998754 44556778999


Q ss_pred             EEEccCCCCCCccCC--CCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC----
Q 013303          158 VVVCNGHFSVPRLAQ--VPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----  231 (446)
Q Consensus       158 VVvAtG~~s~p~~p~--i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~----  231 (446)
                      ||||||+++.|++|.  +||++.|+|.++||++|++++.|+||+|+|||+|.||+|||.+|+..+++|++++|++.    
T Consensus       142 VvvatG~~~~P~~P~~~~~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~p  221 (531)
T PF00743_consen  142 VVVATGHFSKPNIPEPSFPGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLP  221 (531)
T ss_dssp             EEEEE-SSSCESB-----CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC-------
T ss_pred             EEEcCCCcCCCCCChhhhhhhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccccccc
Confidence            999999999999995  99999999999999999999999999999999999999999999999999999999874    


Q ss_pred             ---------cc--------cc---------ccC------------------------------------CCCCCeeeccc
Q 013303          232 ---------DE--------TH---------EKQ------------------------------------PGYDNMWLHSM  249 (446)
Q Consensus       232 ---------~~--------~~---------~~~------------------------------------~~~~~v~~~~~  249 (446)
                               +.        .+         ..+                                    ...+.+..++.
T Consensus       222 r~~~~G~P~D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk~~  301 (531)
T PF00743_consen  222 RYWDNGYPFDMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVKPD  301 (531)
T ss_dssp             -----------------------------------------------------------------------------EE-
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                     00        00         000                                    01124445678


Q ss_pred             eeEEccCCcEEecCCcEE-eecEEEEecCccCCCCCCCCCCeeeeCCCCcccccccccCCCC-CCCeEEecCCC-ccCch
Q 013303          250 VERANEDGTVVFRNGRVV-SADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVFPPVL-APGLSFVGIPQ-KVIPF  326 (446)
Q Consensus       250 v~~i~~~~~v~~~dG~~~-~~D~vi~atG~~~~~~~l~~~g~i~~~~~~~~~l~~~~~~~~~-~p~l~~iG~~~-~~~~~  326 (446)
                      |+++.++ +|+|+||+++ ++|+||+||||++++|||++.. +.++++.. .||+++|++.. +|+|+|||++. .+..+
T Consensus       302 I~~~~~~-~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~~-~~~~~~~~-~LYk~vfp~~~~~ptLafIG~~~~~g~~f  378 (531)
T PF00743_consen  302 IKRFTEN-SVIFEDGSTEEDVDVIIFCTGYKFSFPFLDESL-IKVDDNRV-RLYKHVFPPNLDHPTLAFIGLVQPFGSIF  378 (531)
T ss_dssp             EEEE-SS-EEEETTSEEEEE-SEEEE---EE---TTB-TTT-T-S-SSSS-SEETTTEETETTSTTEEESS-SBSSS-HH
T ss_pred             ccccccc-ccccccccccccccccccccccccccccccccc-cccccccc-ccccccccccccccccccccccccccccc
Confidence            8889764 4999999986 5999999999999999999764 45555544 79999999863 59999999876 35678


Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHcCCCCcceeecCCcchhHHHHHHHHHCCCCC-chH-HHH--
Q 013303          327 PFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYSKLEASGKPKRYTHIMDYPQLIEYTDWLAAQCNCQG-YEE-WRK--  402 (446)
Q Consensus       327 ~~~~~qa~~~a~~l~g~~~lp~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~l~~~~g~~~-~~~-~~~--  402 (446)
                      +++|+||+|+|++|+|+.+||+.++|.+++.++.+++..+... ...|.+.. +++.|+|+||+++|+.| +.. |.+  
T Consensus       379 p~~ElQArw~a~v~sG~~~LPs~~~M~~~i~~~~~~~~~~~~~-~~~~~~~~-d~~~y~deLA~~iG~~P~~~~l~~~dp  456 (531)
T PF00743_consen  379 PIFELQARWAARVFSGRVKLPSKEEMMEEIEEEQEWRAKRFGF-SPRHTIQV-DYIDYMDELAREIGCKPNFWKLFLTDP  456 (531)
T ss_dssp             HHHHHHHHHHHHHHTTSS----HHHHHHHHHHHHHHHHT--SH-HHHHHHHH-HHHHHHHTTS-----------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccc-cccccccc-ccccccccccccccccccccccccccc
Confidence            9999999999999999999999999999999987776544322 12344433 58899999999999854 221 122  


Q ss_pred             HHHHHH-HhhhcccCCcccC----CcCCCHH
Q 013303          403 QMAYSA-FKNAFITRPGTYR----DEWDDEH  428 (446)
Q Consensus       403 ~~~~~~-~~~~~~~~~~~yr----~~~~~~~  428 (446)
                      .++..+ +.+   ..|..||    ..|....
T Consensus       457 ~l~~~~~~gp---~~p~~YRL~Gpg~w~gar  484 (531)
T PF00743_consen  457 KLARKLYFGP---CTPYQYRLFGPGKWPGAR  484 (531)
T ss_dssp             -------------------------------
T ss_pred             cccccccccc---cccccccccccccccccc
Confidence            244333 444   7899999    3355443

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.8e-67  Score=513.49  Aligned_cols=421  Identities=47%  Similarity=0.859  Sum_probs=359.6

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCccc
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~   80 (446)
                      |+++|||||||||||++|++|.++|++++||||++.+||.|.+.+...           ..++++|++|++|+|++.|+|
T Consensus         5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~-----------~~~ss~Y~~l~tn~pKe~~~~   73 (448)
T KOG1399|consen    5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVE-----------VVHSSVYKSLRTNLPKEMMGY   73 (448)
T ss_pred             CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCccc-----------ccccchhhhhhccCChhhhcC
Confidence            368999999999999999999999999999999999999999975443           246889999999999999999


Q ss_pred             CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEE
Q 013303           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV  160 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVv  160 (446)
                      +||||++.      ....||++.++.+||++||++|++.++|+|+++|..|+...++.|.|.+.+..+...+..||.|||
T Consensus        74 ~dfpf~~~------~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvV  147 (448)
T KOG1399|consen   74 SDFPFPER------DPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVV  147 (448)
T ss_pred             CCCCCccc------CcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEE
Confidence            99999876      456779999999999999999999999999999999988764699999988654456889999999


Q ss_pred             ccCCCCCCccCCCCC--CCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCccccccC
Q 013303          161 CNGHFSVPRLAQVPG--IDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQ  238 (446)
Q Consensus       161 AtG~~s~p~~p~i~G--~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~~~~~~~  238 (446)
                      |||||..|++|.++|  ++.|+|+++||++|+.++.|++|+|+|||+|+||+|+|.+++..+++|+++.++........-
T Consensus       148 ctGh~~~P~~P~~~g~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~~~~~~~~~~~  227 (448)
T KOG1399|consen  148 CTGHYVEPRIPQIPGPGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVVSPKVHVEPPE  227 (448)
T ss_pred             cccCcCCCCCCcCCCCchhhcCCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeeecccccccccc
Confidence            999997799999999  679999999999999999999999999999999999999999999999999762000000000


Q ss_pred             CCCCCeeeccceeEEccCCcEEecCCcEEeecEEEEecCccCCCCCCCCCCeeeeCCCCcccccccccCCCCCCCeEEec
Q 013303          239 PGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVG  318 (446)
Q Consensus       239 ~~~~~v~~~~~v~~i~~~~~v~~~dG~~~~~D~vi~atG~~~~~~~l~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG  318 (446)
                      .-..+++.++.|+.+.+++.+.+.++....+|.||+||||.+.+|||+..+.+.+.++.+.|+|+++|++...|++.++|
T Consensus       228 ~~~~~~~~~~~i~~~~e~~~~~~~~~~~~~~D~ii~ctgy~y~fPfl~~~~~~~~~~~~~~pl~k~~~p~~~~~~~~~~~  307 (448)
T KOG1399|consen  228 ILGENLWQVPSIKSFTEDGSVFEKGGPVERVDRIIFCTGYKYKFPFLETLGLGTVRDNIVGPLYKKVFPPALAPGLSLAG  307 (448)
T ss_pred             eeecceEEccccccccCcceEEEcCceeEEeeeEEEeeeeEeecceeccCCceeeccCcccchheeccchhhCccccccc
Confidence            11236666777999988886777777778899999999999999999988767778888889999999998889999999


Q ss_pred             CCCccCchhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHcCCC-CcceeecCCcchhHHHHHHHHHCCCCCc
Q 013303          319 IPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYSKLEASGKP-KRYTHIMDYPQLIEYTDWLAAQCNCQGY  397 (446)
Q Consensus       319 ~~~~~~~~~~~~~qa~~~a~~l~g~~~lp~~~~m~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~y~~~l~~~~g~~~~  397 (446)
                      ++.....++++|.|++|++++++|+..||+.++|+.+.......+...+.+ .|++|.+....+++|..+++.+.|++..
T Consensus       308 l~~~~~~f~~~e~Q~r~~~~v~~G~~~lps~~~m~~d~~~~~~~~~~~~~~~~~~t~~~~~~~l~~y~~~~~~~~g~~~~  387 (448)
T KOG1399|consen  308 LPLIQIPFPMFELQARWVAAVLEGRLKLPSKDQMLEDGQEKYEKLDAVGLATGRHTHVPDYDELAEYINWFADLCGFPKT  387 (448)
T ss_pred             cCeeeEeecceehhhhhhHhhhcCCCcCCCHHHhhhhhhhhhhhhhhhcccccccccccchHHHHHHhhhhhhhcCCCCc
Confidence            987778999999999999999999999999999999999988888888877 6666765312588999999999999999


Q ss_pred             hHHHHHHHHHHHhhhcccCCcccCCcCCCH-HHHHHHHHHHhh
Q 013303          398 EEWRKQMAYSAFKNAFITRPGTYRDEWDDE-HLVAEANKDFIK  439 (446)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~yr~~~~~~-~~~~~~~~~~~~  439 (446)
                      ++|+............ ....+||+.|.+. ..+..+.+++.+
T Consensus       388 ~~~~~~~~~~g~~~~y-~~~~~~~~~w~g~~~~~~~~~~~~~~  429 (448)
T KOG1399|consen  388 EPWLAKEGWKGPCGLY-AYGLTGPDKWDGAAKLILEADDDIGK  429 (448)
T ss_pred             chHHhhhhccCcccee-EeecccCcccccHHHHHHHHHHhhcc
Confidence            9998765433333333 5677888999999 444477777765

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.2e-38  Score=316.33  Aligned_cols=200  Identities=32%  Similarity=0.589  Sum_probs=185.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCc-EEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCccc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHT-VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~-v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~   80 (446)
                      .+||+|||||++||++|.+|.+.|.. ++|||+++.+||+|+++                    +|++++.++|+..++|
T Consensus         8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~--------------------ry~~l~~~~p~~~~~~   67 (443)
T COG2072           8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYN--------------------RYPGLRLDSPKWLLGF   67 (443)
T ss_pred             cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhc--------------------cCCceEECCchheecc
Confidence            57999999999999999999999998 99999999999999985                    8999999999999999


Q ss_pred             CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCC-CceEEEEEeCCCceEEEEEcEEE
Q 013303           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRKKDDVVEEETFDAVV  159 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~-~~~~v~~~~~~~~~~~~~~d~VV  159 (446)
                      +.+||..        ...|+...++.+|+.++++++++...|++++.|..+.++++ ..|+|+++++...+  ++||+||
T Consensus        68 ~~~p~~~--------~~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~--~~a~~vV  137 (443)
T COG2072          68 PFLPFRW--------DEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGE--LTADFVV  137 (443)
T ss_pred             CCCccCC--------cccCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeee--EecCEEE
Confidence            9999962        45777777899999999999999999999999999988765 48999998875322  7899999


Q ss_pred             EccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       160 vAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      +|||+++.|++|.|+|.+.|.|.++||.+|+++++|+||+|+|||+|.||+|+|.+|++.+++|+++.|++.
T Consensus       138 ~ATG~~~~P~iP~~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~  209 (443)
T COG2072         138 VATGHLSEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPP  209 (443)
T ss_pred             EeecCCCCCCCCCCCCccCCCceEEchhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999985

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=100.00  E-value=6.3e-34  Score=271.70  Aligned_cols=276  Identities=21%  Similarity=0.274  Sum_probs=208.3

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d   82 (446)
                      +||+|||||+|||++|..|++.|++|+|||+.+ +||.|.....                              ...++.
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~------------------------------~~~~~~   49 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTTE------------------------------VENYPG   49 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeeccc------------------------------ccccCC
Confidence            589999999999999999999999999999875 7887764210                              000111


Q ss_pred             CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEcc
Q 013303           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN  162 (446)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAt  162 (446)
                      +             +...++.++.+++.++++++++.  +++ ++|+++++.+ +.|.|++.++.    ++.||+||+||
T Consensus        50 ~-------------~~~~~~~~~~~~l~~~~~~~gv~--~~~-~~v~~v~~~~-~~~~v~~~~~~----~~~~d~liiAt  108 (300)
T TIGR01292        50 F-------------PEGISGPELMEKMKEQAVKFGAE--IIY-EEVIKVDLSD-RPFKVKTGDGK----EYTAKAVIIAT  108 (300)
T ss_pred             C-------------CCCCChHHHHHHHHHHHHHcCCe--EEE-EEEEEEEecC-CeeEEEeCCCC----EEEeCEEEECC
Confidence            1             11234568999999999999987  777 8999999865 67888876543    79999999999


Q ss_pred             CCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC----ccccccC
Q 013303          163 GHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETHEKQ  238 (446)
Q Consensus       163 G~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~----~~~~~~~  238 (446)
                      |  +.|+.|.+||.+.+.+..++...+.....+++++|+|||+|.+|+|+|..|++.+++|+++.+.+.    ....+.+
T Consensus       109 G--~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~~~~~~~~l  186 (300)
T TIGR01292       109 G--ASARKLGIPGEDEFLGRGVSYCATCDGPFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRAEKILLDRL  186 (300)
T ss_pred             C--CCcccCCCCChhhcCCccEEEeeecChhhcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCcCHHHHHHH
Confidence            9  788989999987776666666655555567889999999999999999999999999999999764    1112223


Q ss_pred             CCC-C-CeeeccceeEEccCCc---EEec---CC--cEEeecEEEEecCccCCCCCCC------CCCeeeeCCCCccccc
Q 013303          239 PGY-D-NMWLHSMVERANEDGT---VVFR---NG--RVVSADVIMHCTGYKYNYPFLE------TNGIVTVDDNRVGPLY  302 (446)
Q Consensus       239 ~~~-~-~v~~~~~v~~i~~~~~---v~~~---dG--~~~~~D~vi~atG~~~~~~~l~------~~g~i~~~~~~~~~l~  302 (446)
                      .+. + .+.....+.++..++.   +.+.   +|  .++++|.||+|||++|+.+++.      ++|.+.+|+..+    
T Consensus       187 ~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~~~~~~~~g~i~v~~~~~----  262 (300)
T TIGR01292       187 RKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGLLELDEGGYIVTDEGMR----  262 (300)
T ss_pred             HhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCCCChHHHHHhheecCCCcEEECCCCc----
Confidence            333 2 4555678888876543   4443   24  4588999999999999987753      345566655533    


Q ss_pred             ccccCCCCCCCeEEecCCCc--cCchhHHHHHHHHHHHHHcC
Q 013303          303 KHVFPPVLAPGLSFVGIPQK--VIPFPFFELQSKWIASVLSG  342 (446)
Q Consensus       303 ~~~~~~~~~p~l~~iG~~~~--~~~~~~~~~qa~~~a~~l~g  342 (446)
                            ++.|+||++|++..  ......+..||+.+|.++..
T Consensus       263 ------t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~  298 (300)
T TIGR01292       263 ------TSVPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAER  298 (300)
T ss_pred             ------cCCCCEEEeecccCcchhhhhhhhhhHHHHHHHHHh
Confidence                  45899999998864  34456788999999988753

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=100.00  E-value=2.7e-33  Score=275.03  Aligned_cols=293  Identities=24%  Similarity=0.324  Sum_probs=204.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCcc-CceeecCCCCCccc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLY-KSLRVNLPRELMGF   80 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y-~~l~~~~~~~~~~~   80 (446)
                      .+||+||||||+|..||..+++.|.+|+++|+...+||+|.+.        ||+|+|.++++... ..+.....  .+++
T Consensus         4 ~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~--------GCIPsK~Ll~~a~~~~~~~~~~~--~~Gi   73 (454)
T COG1249           4 EYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNV--------GCIPSKALLHAAEVIEEARHAAK--EYGI   73 (454)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEee--------CccccHHHHHHHHHHHHHhhccc--ccce
Confidence            5899999999999999999999999999999988899999986        99999988876533 33222111  1111


Q ss_pred             CCCCCCcCCCCCCCCCCCCCCHHHHHHH-----------HHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCc
Q 013303           81 QAYPFVARNYEGSVDLRRYPGHEEVLRY-----------LQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV  149 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~y-----------l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~  149 (446)
                      .     ..       .. -.+..++.+.           +..+.+..+++  +..+ +.    +.. +..+|.+...  .
T Consensus        74 ~-----~~-------~~-~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~--vi~G-~a----~f~-~~~~v~V~~~--~  130 (454)
T COG1249          74 S-----AE-------VP-KIDFEKLLARKDKVVRLLTGGVEGLLKKNGVD--VIRG-EA----RFV-DPHTVEVTGE--D  130 (454)
T ss_pred             e-----cC-------CC-CcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCE--EEEE-EE----EEC-CCCEEEEcCC--C
Confidence            0     00       00 1122233333           23333333443  2211 11    111 3456666553  2


Q ss_pred             eEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303          150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS  229 (446)
Q Consensus       150 ~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~  229 (446)
                      .++++++++|||||  |+|+.|+++|++..  .++.+.+..... .-+++++|||+|.+|+|+|..+++.|.+||++.+.
T Consensus       131 ~~~~~a~~iiIATG--S~p~~~~~~~~~~~--~~~~s~~~l~~~-~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~  205 (454)
T COG1249         131 KETITADNIIIATG--SRPRIPPGPGIDGA--RILDSSDALFLL-ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERG  205 (454)
T ss_pred             ceEEEeCEEEEcCC--CCCcCCCCCCCCCC--eEEechhhcccc-cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Confidence            35899999999999  99999999998752  244444423333 45799999999999999999999999999999998


Q ss_pred             CC-----cccc-----ccCCCC-CCeeeccceeEEccCCc---EEecCCc--EEeecEEEEecCccCCCCCC--------
Q 013303          230 VA-----DETH-----EKQPGY-DNMWLHSMVERANEDGT---VVFRNGR--VVSADVIMHCTGYKYNYPFL--------  285 (446)
Q Consensus       230 ~~-----~~~~-----~~~~~~-~~v~~~~~v~~i~~~~~---v~~~dG~--~~~~D~vi~atG~~~~~~~l--------  285 (446)
                      +.     ++.+     +.+.+. ..+.....+++++.++.   +.+++|.  ++++|.|++|+|++||++-|        
T Consensus       206 ~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~  285 (454)
T COG1249         206 DRILPGEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVE  285 (454)
T ss_pred             CCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCce
Confidence            86     1111     222232 24566677888865442   7778887  68899999999999999854        


Q ss_pred             -CCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcC
Q 013303          286 -ETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSG  342 (446)
Q Consensus       286 -~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g  342 (446)
                       ++.|.|.+|+.++          ++.|+||++|++.. ....+.+..|++.++.++.|
T Consensus       286 ~~~rg~I~VD~~~~----------Tnvp~IyA~GDV~~~~~Lah~A~~eg~iaa~~i~g  334 (454)
T COG1249         286 LDDRGFIKVDDQMT----------TNVPGIYAIGDVIGGPMLAHVAMAEGRIAAENIAG  334 (454)
T ss_pred             ECCCCCEEeCCccc----------cCCCCEEEeeccCCCcccHhHHHHHHHHHHHHHhC
Confidence             3445677774444          55899999999853 34678899999999999997

>PRK10262 thioredoxin reductase; Provisional

Probab=100.00  E-value=3.4e-32  Score=262.01  Aligned_cols=278  Identities=17%  Similarity=0.209  Sum_probs=200.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .+||+|||||||||+||..|++.|+++++||+. ..||.+.....                                 +.
T Consensus         6 ~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~~~~---------------------------------~~   51 (321)
T PRK10262          6 HSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTTTE---------------------------------VE   51 (321)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceecCce---------------------------------EC
Confidence            579999999999999999999999999999964 67888765310                                 01


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                      ++|.          .+...+..++.+++.++++.++..  ++++ +|..|+... +.|+++...+     ++.||+||+|
T Consensus        52 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~v~~v~~~~-~~~~v~~~~~-----~~~~d~vilA  112 (321)
T PRK10262         52 NWPG----------DPNDLTGPLLMERMHEHATKFETE--IIFD-HINKVDLQN-RPFRLTGDSG-----EYTCDALIIA  112 (321)
T ss_pred             CCCC----------CCCCCCHHHHHHHHHHHHHHCCCE--EEee-EEEEEEecC-CeEEEEecCC-----EEEECEEEEC
Confidence            1111          122345678899999999998875  6654 677887765 6788765321     5899999999


Q ss_pred             cCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc-------cc
Q 013303          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD-------ET  234 (446)
Q Consensus       162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~-------~~  234 (446)
                      ||  +.|+.|++||.+.|.+..+|++.+.+...+.+++|+|||+|.+|+|+|..|++.+++|+++.|.+..       ..
T Consensus       113 tG--~~~~~~~i~g~~~~~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~~~~~~~~  190 (321)
T PRK10262        113 TG--ASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKR  190 (321)
T ss_pred             CC--CCCCCCCCCCHHHcCCCcEEEeecCCHHHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccCCCHHHHHH
Confidence            99  7899999999887878888888777766778999999999999999999999999999999997631       11


Q ss_pred             c-ccCCCCC-CeeeccceeEEccCC----cEEecCC------cEEeecEEEEecCccCCCCCCC-----CCCeeeeCCCC
Q 013303          235 H-EKQPGYD-NMWLHSMVERANEDG----TVVFRNG------RVVSADVIMHCTGYKYNYPFLE-----TNGIVTVDDNR  297 (446)
Q Consensus       235 ~-~~~~~~~-~v~~~~~v~~i~~~~----~v~~~dG------~~~~~D~vi~atG~~~~~~~l~-----~~g~i~~~~~~  297 (446)
                      + +.+.+.+ ++.....|.++.+++    .|++.++      +++++|.||+|+|++|+..++.     +.|.|.+|+..
T Consensus       191 ~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~~l~~~~g~i~vd~~~  270 (321)
T PRK10262        191 LMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGI  270 (321)
T ss_pred             HHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhhccccccCCEEEECCCC
Confidence            1 2222222 455567788887654    2666543      3689999999999999987643     23556666521


Q ss_pred             cccccccccCCCCCCCeEEecCCCccC--chhHHHHHHHHHHHH
Q 013303          298 VGPLYKHVFPPVLAPGLSFVGIPQKVI--PFPFFELQSKWIASV  339 (446)
Q Consensus       298 ~~~l~~~~~~~~~~p~l~~iG~~~~~~--~~~~~~~qa~~~a~~  339 (446)
                      +    ...+. ++.|+||++|++....  ....+-.++..+|..
T Consensus       271 ~----~~~~~-t~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa~~  309 (321)
T PRK10262        271 H----GNATQ-TSIPGVFAAGDVMDHIYRQAITSAGTGCMAALD  309 (321)
T ss_pred             c----ccccc-cCCCCEEECeeccCCCcceEEEEehhHHHHHHH
Confidence            1    00122 5599999999886432  223344455544443

>PLN02507 glutathione reductase

Probab=100.00  E-value=1e-32  Score=279.03  Aligned_cols=293  Identities=18%  Similarity=0.231  Sum_probs=197.5

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEee---------CCCcCceeeeCCCCCCCCCCCCCCCCCccCCcc-Cceeec
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEK---------GEQVGGSWIYTSETESDPLGVDPNRYPVHSSLY-KSLRVN   72 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~---------~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y-~~l~~~   72 (446)
                      +||+||||||+|+.+|..+++.|.+|+|+|+         .+.+||+|.+.        ||+|++.++.+... ..++ .
T Consensus        26 yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~--------GciPsK~l~~~a~~~~~~~-~   96 (499)
T PLN02507         26 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIR--------GCVPKKILVYGATFGGEFE-D   96 (499)
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeecc--------CchhHHHHHHHHHHHHHHH-H
Confidence            6899999999999999999999999999996         36799999875        99999877654422 1111 1


Q ss_pred             CCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHH-----------HHHHHHhCCCCcEEeCeEEEEEEEcCCCceEE
Q 013303           73 LPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYL-----------QNFAREFGVDQVVRLHTEVLNARLVESNKWKV  141 (446)
Q Consensus        73 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl-----------~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v  141 (446)
                      ...  +++.   ...         ..-....++.+++           .......+++  +. ..++..+++   ..++|
T Consensus        97 ~~~--~G~~---~~~---------~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~--~i-~g~a~~vd~---~~v~V  156 (499)
T PLN02507         97 AKN--YGWE---INE---------KVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVK--LY-EGEGKIVGP---NEVEV  156 (499)
T ss_pred             HHh--cCcc---cCC---------CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcE--EE-EEEEEEecC---CEEEE
Confidence            111  0110   000         0011223333332           2333333443  22 234444443   34666


Q ss_pred             EEEeCCCceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCC
Q 013303          142 KSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAK  221 (446)
Q Consensus       142 ~~~~~~~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~  221 (446)
                      +..+  ++..++.||+||||||  +.|..|.+||.+.    ..++.+....+. .+++|+|||+|.+|+|+|..+++.|+
T Consensus       157 ~~~~--g~~~~~~~d~LIIATG--s~p~~p~ipG~~~----~~~~~~~~~l~~-~~k~vvVIGgG~ig~E~A~~l~~~G~  227 (499)
T PLN02507        157 TQLD--GTKLRYTAKHILIATG--SRAQRPNIPGKEL----AITSDEALSLEE-LPKRAVVLGGGYIAVEFASIWRGMGA  227 (499)
T ss_pred             EeCC--CcEEEEEcCEEEEecC--CCCCCCCCCCccc----eechHHhhhhhh-cCCeEEEECCcHHHHHHHHHHHHcCC
Confidence            6543  3334689999999999  8999999999653    122222222222 36899999999999999999999999


Q ss_pred             EEEEEEecCC-----cccc-----ccCCCC-CCeeeccceeEEccC-Cc--EEecCCcEEeecEEEEecCccCCCCCCC-
Q 013303          222 EVHIASRSVA-----DETH-----EKQPGY-DNMWLHSMVERANED-GT--VVFRNGRVVSADVIMHCTGYKYNYPFLE-  286 (446)
Q Consensus       222 ~V~l~~r~~~-----~~~~-----~~~~~~-~~v~~~~~v~~i~~~-~~--v~~~dG~~~~~D~vi~atG~~~~~~~l~-  286 (446)
                      +|+++++.+.     +..+     +.+.+. -++..+..|+++..+ +.  +.+.+|+++++|.||+|+|++|+..+|. 
T Consensus       228 ~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l  307 (499)
T PLN02507        228 TVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTKRLNL  307 (499)
T ss_pred             eEEEEEecCCcCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCCCCCc
Confidence            9999998764     1111     112222 256667788888643 22  5667888899999999999999998742 


Q ss_pred             --------CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCC
Q 013303          287 --------TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       287 --------~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~  343 (446)
                              +.|.|.+|++++          ++.|+||++|++.. ....+.+..||+.++.++.|.
T Consensus       308 ~~~gl~~~~~G~I~Vd~~~~----------Ts~p~IyAiGDv~~~~~l~~~A~~qg~~aa~ni~g~  363 (499)
T PLN02507        308 EAVGVELDKAGAVKVDEYSR----------TNIPSIWAIGDVTNRINLTPVALMEGTCFAKTVFGG  363 (499)
T ss_pred             hhhCcEECCCCcEecCCCCc----------CCCCCEEEeeEcCCCCccHHHHHHHHHHHHHHHcCC
Confidence                    234455555544          56899999999874 344578899999999999875

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=100.00  E-value=1.2e-32  Score=276.37  Aligned_cols=299  Identities=17%  Similarity=0.221  Sum_probs=199.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .+||+||||||||++||..+++.|++|+|+|+ +.+||+|.+.        ||+|++.++++........+.+.......
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~~--------gciPsk~l~~~a~~~~~~~~~~~~g~~~~   72 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVIR--------GCVPKKLMVYGSTFGGEFEDAAGYGWTVG   72 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeecC--------CcCchHHHHHHHHHHHHHhhhHhcCcCCC
Confidence            58999999999999999999999999999999 5799999986        99999877654422111111111000000


Q ss_pred             --CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEE
Q 013303           82 --AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV  159 (446)
Q Consensus        82 --d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VV  159 (446)
                        .+.|....      ........++.++++...++.+++  +.. .++..+++   ....+. .++    .++.||+||
T Consensus        73 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~gV~--~~~-g~~~~v~~---~~v~v~-~~g----~~~~~d~lI  135 (446)
T TIGR01424        73 KARFDWKKLL------QKKDDEIARLSGLYKRLLANAGVE--LLE-GRARLVGP---NTVEVL-QDG----TTYTAKKIL  135 (446)
T ss_pred             CCCcCHHHHH------HHHHHHHHHHHHHHHHHHHhCCcE--EEE-EEEEEecC---CEEEEe-cCC----eEEEcCEEE
Confidence              01110000      000000123444555666666776  443 36666643   223332 122    368999999


Q ss_pred             EccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC-----ccc
Q 013303          160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-----DET  234 (446)
Q Consensus       160 vAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~-----~~~  234 (446)
                      ||||  +.|..|++||.+.    ...+.+.... ...+++|+|||+|.+|+|+|..+++.+.+|+++.+.+.     +..
T Consensus       136 iATG--s~p~~p~i~G~~~----~~~~~~~~~l-~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~  208 (446)
T TIGR01424       136 IAVG--GRPQKPNLPGHEL----GITSNEAFHL-PTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRGFDDD  208 (446)
T ss_pred             EecC--CcCCCCCCCCccc----eechHHhhcc-cccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcccCHH
Confidence            9999  8999999999753    1222222111 12478999999999999999999999999999998764     111


Q ss_pred             -----cccCCCC-CCeeeccceeEEccCC---cEEecCCcEEeecEEEEecCccCCCCCC--C-------CCCeeeeCCC
Q 013303          235 -----HEKQPGY-DNMWLHSMVERANEDG---TVVFRNGRVVSADVIMHCTGYKYNYPFL--E-------TNGIVTVDDN  296 (446)
Q Consensus       235 -----~~~~~~~-~~v~~~~~v~~i~~~~---~v~~~dG~~~~~D~vi~atG~~~~~~~l--~-------~~g~i~~~~~  296 (446)
                           .+.+.+. .++..+..|.++..++   .+.+.+|+++++|.||+|+|+.|+...|  .       ++|.+.+|++
T Consensus       209 ~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~  288 (446)
T TIGR01424       209 MRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEY  288 (446)
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCC
Confidence                 1112222 2555667788886422   2566788899999999999999998753  2       3355666666


Q ss_pred             CcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCC
Q 013303          297 RVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       297 ~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~  343 (446)
                      .+          ++.|+||++|++.. ....+.+..||+.++.++.|.
T Consensus       289 ~~----------Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~~i~~~  326 (446)
T TIGR01424       289 SR----------TSIPSIYAVGDVTDRINLTPVAIMEATCFANTEFGN  326 (446)
T ss_pred             Cc----------cCCCCEEEeeccCCCccchhHHHHHHHHHHHHHhcC
Confidence            54          56899999999874 344577899999999999874

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.2e-32  Score=252.49  Aligned_cols=257  Identities=25%  Similarity=0.320  Sum_probs=202.4

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCCc-EEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcc
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGHT-VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG   79 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~-v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~   79 (446)
                      +.+||+|||||||||+||.++.+.+++ ++|+|+ ..+||+......                              .-+
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~-~~~gg~~~~~~~------------------------------ven   50 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEG-GEPGGQLTKTTD------------------------------VEN   50 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEec-CCcCCcccccee------------------------------ecC
Confidence            358999999999999999999999999 555555 567766554321                              111


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEE
Q 013303           80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV  159 (446)
Q Consensus        80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VV  159 (446)
                      |+.++.             -.++.++.+-+.+++..++.+  +.. ..|..++... +.|+|++.++     ++++++||
T Consensus        51 ypg~~~-------------~~~g~~L~~~~~~~a~~~~~~--~~~-~~v~~v~~~~-~~F~v~t~~~-----~~~ak~vI  108 (305)
T COG0492          51 YPGFPG-------------GILGPELMEQMKEQAEKFGVE--IVE-DEVEKVELEG-GPFKVKTDKG-----TYEAKAVI  108 (305)
T ss_pred             CCCCcc-------------CCchHHHHHHHHHHHhhcCeE--EEE-EEEEEEeecC-ceEEEEECCC-----eEEEeEEE
Confidence            222221             134578889999999999987  544 7888887764 2788888775     49999999


Q ss_pred             EccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC----cccc
Q 013303          160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETH  235 (446)
Q Consensus       160 vAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~----~~~~  235 (446)
                      ||||  ..++.|.+||...|.|+.+|.+..++. .|++|+|+|||+|.||+|-|..|++.+++||+++|++.    ....
T Consensus       109 iAtG--~~~~~~~~~~e~e~~g~gv~yc~~cdg-~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra~~~~~  185 (305)
T COG0492         109 IATG--AGARKLGVPGEEEFEGKGVSYCATCDG-FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRAEEILV  185 (305)
T ss_pred             ECcC--CcccCCCCCcchhhcCCceEEeeecCc-cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCcCHHHH
Confidence            9999  889999999877899999999999999 89999999999999999999999999999999999886    1222


Q ss_pred             ccCCCC--CCeeeccceeEEccCC--cEEecCC--c--EEeecEEEEecCccCCCCCC------CCCCeeeeCCCCcccc
Q 013303          236 EKQPGY--DNMWLHSMVERANEDG--TVVFRNG--R--VVSADVIMHCTGYKYNYPFL------ETNGIVTVDDNRVGPL  301 (446)
Q Consensus       236 ~~~~~~--~~v~~~~~v~~i~~~~--~v~~~dG--~--~~~~D~vi~atG~~~~~~~l------~~~g~i~~~~~~~~~l  301 (446)
                      +++.+.  ..+..+..|+++.+++  .|.+.+.  +  ++.+|.+++++|+.|+..|+      ++.|.|.+++.+.   
T Consensus       186 ~~l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~~~~~~g~I~v~~~~~---  262 (305)
T COG0492         186 ERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGVLDENGYIVVDEEME---  262 (305)
T ss_pred             HHHHhcCCeEEEeCCceeEEecCccceEEEEecCCceEEEEeceEEEecCCCCchHHHhhccccCCCCcEEcCCCcc---
Confidence            333333  3556678899998863  4888774  3  47799999999999998886      4577888888765   


Q ss_pred             cccccCCCCCCCeEEecCCCcc
Q 013303          302 YKHVFPPVLAPGLSFVGIPQKV  323 (446)
Q Consensus       302 ~~~~~~~~~~p~l~~iG~~~~~  323 (446)
                             |+.|+||++|++...
T Consensus       263 -------TsvpGifAaGDv~~~  277 (305)
T COG0492         263 -------TSVPGIFAAGDVADK  277 (305)
T ss_pred             -------cCCCCEEEeEeeccC
Confidence                   779999999987643

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=100.00  E-value=1.4e-32  Score=275.60  Aligned_cols=289  Identities=19%  Similarity=0.261  Sum_probs=193.9

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCc-cCceeecCCCCCcc
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSL-YKSLRVNLPRELMG   79 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~-y~~l~~~~~~~~~~   79 (446)
                      +.+||+||||||||++||..|++.|++|+|+|+. .+||+|.+.        ||+|++.+++... +..++ +.  ..++
T Consensus         1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~~--------gciPsk~l~~~a~~~~~~~-~~--~~~g   68 (450)
T TIGR01421         1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVNV--------GCVPKKVMWYASDLAERMH-DA--ADYG   68 (450)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceecc--------CcCccHHHHHHHHHHHHHh-HH--hhcC
Confidence            3589999999999999999999999999999994 799999986        8999987665432 12111 11  1111


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCCHHHHHH-----------HHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCC
Q 013303           80 FQAYPFVARNYEGSVDLRRYPGHEEVLR-----------YLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDD  148 (446)
Q Consensus        80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~-----------yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~  148 (446)
                      +...            ...-....++.+           .+....++.+++  +..++.+. .     +..+|.+. +  
T Consensus        69 ~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~--~~~g~~~~-~-----~~~~v~v~-~--  125 (450)
T TIGR01421        69 FYQN------------LENTFNWPELKEKRDAYVDRLNGIYQKNLEKNKVD--VIFGHARF-T-----KDGTVEVN-G--  125 (450)
T ss_pred             cccC------------CcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEEEE-c-----cCCEEEEC-C--
Confidence            1100            000011222222           233444445665  55554432 1     22345542 2  


Q ss_pred             ceEEEEEcEEEEccCCCCCCccC-CCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEE
Q 013303          149 VVEEETFDAVVVCNGHFSVPRLA-QVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIAS  227 (446)
Q Consensus       149 ~~~~~~~d~VVvAtG~~s~p~~p-~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~  227 (446)
                        ..+.||+||||||  +.|+.| .+||.+.    ...+..+..... .+++|+|||+|.+|+|+|..|++.|++|+++.
T Consensus       126 --~~~~~d~vIiAtG--s~p~~p~~i~g~~~----~~~~~~~~~~~~-~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~  196 (450)
T TIGR01421       126 --RDYTAPHILIATG--GKPSFPENIPGAEL----GTDSDGFFALEE-LPKRVVIVGAGYIAVELAGVLHGLGSETHLVI  196 (450)
T ss_pred             --EEEEeCEEEEecC--CCCCCCCCCCCCce----eEcHHHhhCccc-cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEe
Confidence              2689999999999  899999 8998753    122222222221 36899999999999999999999999999999


Q ss_pred             ecCC-----ccc-----cccCCCC-CCeeeccceeEEccC--C--cEEecCC-cEEeecEEEEecCccCCCCCC--C---
Q 013303          228 RSVA-----DET-----HEKQPGY-DNMWLHSMVERANED--G--TVVFRNG-RVVSADVIMHCTGYKYNYPFL--E---  286 (446)
Q Consensus       228 r~~~-----~~~-----~~~~~~~-~~v~~~~~v~~i~~~--~--~v~~~dG-~~~~~D~vi~atG~~~~~~~l--~---  286 (446)
                      +.+.     +..     .+.+.+. -++..+..|+++..+  +  .+.+++| +++++|.||+|+|++|+.++|  .   
T Consensus       197 ~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g  276 (450)
T TIGR01421       197 RHERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVG  276 (450)
T ss_pred             cCCCCCcccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccC
Confidence            8764     111     1112222 245566778888643  2  2667788 568999999999999999864  2   


Q ss_pred             ----CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCC
Q 013303          287 ----TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       287 ----~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~  343 (446)
                          +.|.+.+|++.+          ++.|+||++|++.. ....+.+..||+.+|+++.|.
T Consensus       277 ~~~~~~G~i~vd~~~~----------T~~p~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~~~  328 (450)
T TIGR01421       277 IKLNEKGQIIVDEYQN----------TNVPGIYALGDVVGKVELTPVAIAAGRKLSERLFNG  328 (450)
T ss_pred             cEECCCCcEEeCCCCc----------CCCCCEEEEEecCCCcccHHHHHHHHHHHHHHHhcC
Confidence                234455555444          55899999999764 445678899999999999864

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK06116 glutathione reductase; Validated

Probab=100.00  E-value=3.4e-32  Score=273.78  Aligned_cols=288  Identities=19%  Similarity=0.264  Sum_probs=197.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeec-CCCCCccc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVN-LPRELMGF   80 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~-~~~~~~~~   80 (446)
                      .+||+||||||||++||..|++.|++|+|||+. .+||+|.+.        ||.|++.++..........+ .+.  +++
T Consensus         4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~--------gciP~k~l~~~~~~~~~~~~~~~~--~g~   72 (450)
T PRK06116          4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNV--------GCVPKKLMWYGAQIAEAFHDYAPG--YGF   72 (450)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhcc--------CcchHHHHHHHHHHHHHHHhHHHh--cCC
Confidence            469999999999999999999999999999985 899999875        89998866654322111111 110  111


Q ss_pred             CCCCCCcCCCCCCCCCCCCCCHHHHH-----------HHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCc
Q 013303           81 QAYPFVARNYEGSVDLRRYPGHEEVL-----------RYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV  149 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~~~v~-----------~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~  149 (446)
                      . ...            .-.....+.           +.+....++.+++  +..+ ++..++     ..+|++ ++   
T Consensus        73 ~-~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~--~~~g-~~~~v~-----~~~v~~-~g---  127 (450)
T PRK06116         73 D-VTE------------NKFDWAKLIANRDAYIDRLHGSYRNGLENNGVD--LIEG-FARFVD-----AHTVEV-NG---  127 (450)
T ss_pred             C-CCC------------CCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEE-EEEEcc-----CCEEEE-CC---
Confidence            0 000            001112222           2233334445665  4443 444443     245666 32   


Q ss_pred             eEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303          150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS  229 (446)
Q Consensus       150 ~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~  229 (446)
                       .++.||+||+|||  +.|+.|++||.+.    ..++..+.... ..+++|+|||+|.+|+|+|..|++.+.+|+++.+.
T Consensus       128 -~~~~~d~lViATG--s~p~~p~i~g~~~----~~~~~~~~~~~-~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  199 (450)
T PRK06116        128 -ERYTADHILIATG--GRPSIPDIPGAEY----GITSDGFFALE-ELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRG  199 (450)
T ss_pred             -EEEEeCEEEEecC--CCCCCCCCCCcce----eEchhHhhCcc-ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence             3699999999999  8999999998753    33333332222 24689999999999999999999999999999987


Q ss_pred             CC-----c-----cccccCCCC-CCeeeccceeEEccC--C--cEEecCCcEEeecEEEEecCccCCCCCC--C------
Q 013303          230 VA-----D-----ETHEKQPGY-DNMWLHSMVERANED--G--TVVFRNGRVVSADVIMHCTGYKYNYPFL--E------  286 (446)
Q Consensus       230 ~~-----~-----~~~~~~~~~-~~v~~~~~v~~i~~~--~--~v~~~dG~~~~~D~vi~atG~~~~~~~l--~------  286 (446)
                      +.     +     ...+.+.+. .++..+..|.++..+  +  .+.+.+|+++++|.||+|+|++|+.++|  .      
T Consensus       200 ~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~  279 (450)
T PRK06116        200 DAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKL  279 (450)
T ss_pred             CCCccccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceE
Confidence            64     1     011122222 256667788888643  2  2667789999999999999999998863  2      


Q ss_pred             -CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCC
Q 013303          287 -TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       287 -~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~  343 (446)
                       +.|.+.+|++.+          ++.|+||++|++.. ....+.+..||+.+|.++.|.
T Consensus       280 ~~~G~i~vd~~~~----------Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~  328 (450)
T PRK06116        280 NEKGYIIVDEYQN----------TNVPGIYAVGDVTGRVELTPVAIAAGRRLSERLFNN  328 (450)
T ss_pred             CCCCcEecCCCCC----------cCCCCEEEEeecCCCcCcHHHHHHHHHHHHHHHhCC
Confidence             344566665544          55899999999863 445578899999999999874

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=100.00  E-value=2.6e-31  Score=270.96  Aligned_cols=275  Identities=19%  Similarity=0.196  Sum_probs=208.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .+||+||||||||++||.+|++.|++|+|+++  .+||+|.....                   ++              
T Consensus       211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~--~~GG~~~~~~~-------------------~~--------------  255 (517)
T PRK15317        211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE--RFGGQVLDTMG-------------------IE--------------  255 (517)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCeeeccCc-------------------cc--------------
Confidence            46999999999999999999999999999986  48999864210                   00              


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                      .++           ...+..+.++.+++.++++++++.  ++++++|.++.+.+ +.|.|.+.++.    ++.||.||+|
T Consensus       256 ~~~-----------~~~~~~~~~l~~~l~~~~~~~gv~--i~~~~~V~~I~~~~-~~~~V~~~~g~----~i~a~~vViA  317 (517)
T PRK15317        256 NFI-----------SVPETEGPKLAAALEEHVKEYDVD--IMNLQRASKLEPAA-GLIEVELANGA----VLKAKTVILA  317 (517)
T ss_pred             ccC-----------CCCCCCHHHHHHHHHHHHHHCCCE--EEcCCEEEEEEecC-CeEEEEECCCC----EEEcCEEEEC
Confidence            010           011245678999999999999988  88899999998865 67888876543    6899999999


Q ss_pred             cCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc---ccc-cc
Q 013303          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD---ETH-EK  237 (446)
Q Consensus       162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~---~~~-~~  237 (446)
                      ||  +.|+.|++||.+.|.+..+|.+...+...++||+|+|||+|++|+|+|..|+..+++|+++.+.+..   ..+ ..
T Consensus       318 tG--~~~r~~~ipG~~~~~~~~v~~~~~~~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~~~~l~~~  395 (517)
T PRK15317        318 TG--ARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKADQVLQDK  395 (517)
T ss_pred             CC--CCcCCCCCCCHHHhcCceEEEeeccCchhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccccHHHHHH
Confidence            99  7788899999877877777776655555678999999999999999999999999999999987641   111 12


Q ss_pred             CCCC--CCeeeccceeEEccCC-c---EEecC---Cc--EEeecEEEEecCccCCCCCCCC------CCeeeeCCCCccc
Q 013303          238 QPGY--DNMWLHSMVERANEDG-T---VVFRN---GR--VVSADVIMHCTGYKYNYPFLET------NGIVTVDDNRVGP  300 (446)
Q Consensus       238 ~~~~--~~v~~~~~v~~i~~~~-~---v~~~d---G~--~~~~D~vi~atG~~~~~~~l~~------~g~i~~~~~~~~~  300 (446)
                      +.+.  -++.....+.++.+++ .   +.+.+   |+  ++++|.|++|+|++|+.+++..      .|.+.+|+..+  
T Consensus       396 l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~v~~~~~g~i~vd~~l~--  473 (517)
T PRK15317        396 LRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGTVELNRRGEIIVDARGA--  473 (517)
T ss_pred             HhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCccCchHHhhheeeCCCCcEEECcCCC--
Confidence            2222  2566667788887663 2   45543   43  4889999999999999888643      34455555444  


Q ss_pred             ccccccCCCCCCCeEEecCCCccC--chhHHHHHHHHHHHHHc
Q 013303          301 LYKHVFPPVLAPGLSFVGIPQKVI--PFPFFELQSKWIASVLS  341 (446)
Q Consensus       301 l~~~~~~~~~~p~l~~iG~~~~~~--~~~~~~~qa~~~a~~l~  341 (446)
                              ++.|+||++|++....  ....+..++..+|..+.
T Consensus       474 --------Ts~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~~~~  508 (517)
T PRK15317        474 --------TSVPGVFAAGDCTTVPYKQIIIAMGEGAKAALSAF  508 (517)
T ss_pred             --------CCCCCEEECccccCCCCCEEEEhhhhHHHHHHHHH
Confidence                    5589999999886432  34666777777665543

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=100.00  E-value=9.2e-32  Score=271.69  Aligned_cols=295  Identities=19%  Similarity=0.160  Sum_probs=198.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCC-ccCceeecCCCCCccc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF   80 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~-~y~~l~~~~~~~~~~~   80 (446)
                      .+||+||||||+|+++|..|++.|++|+|||+.+.+||+|.+.        ||.|++.++... .+..+..     ...|
T Consensus         5 ~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~--------gcipsk~l~~~~~~~~~~~~-----~~~~   71 (461)
T PRK05249          5 DYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHT--------GTIPSKALREAVLRLIGFNQ-----NPLY   71 (461)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCEEEEEecccccccccccc--------CCCCHHHHHHHHHHHHHHhh-----hhhh
Confidence            4799999999999999999999999999999988999999875        788876544321 1111100     0001


Q ss_pred             CCCCCCcCCCCCCCCCCCCCCHHHHHH-----------HHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCc
Q 013303           81 QAYPFVARNYEGSVDLRRYPGHEEVLR-----------YLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV  149 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~-----------yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~  149 (446)
                      .+++.+           ..++..++.+           ++.+..++.+++  +..+ ++..++.   ..++|...+  +.
T Consensus        72 ~~~~~~-----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g-~~~~~~~---~~~~v~~~~--g~  132 (461)
T PRK05249         72 SSYRVK-----------LRITFADLLARADHVINKQVEVRRGQYERNRVD--LIQG-RARFVDP---HTVEVECPD--GE  132 (461)
T ss_pred             cccCCc-----------CccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCE--EEEE-EEEEecC---CEEEEEeCC--Cc
Confidence            111111           1122333333           344445555655  4433 3433332   345555433  33


Q ss_pred             eEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303          150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS  229 (446)
Q Consensus       150 ~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~  229 (446)
                      ..++.||+||||||  +.|..|++++.+.  ..+.++...... ...+++|+|||+|.+|+|+|..+++.|.+|+++.++
T Consensus       133 ~~~~~~d~lviATG--s~p~~p~~~~~~~--~~v~~~~~~~~~-~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~  207 (461)
T PRK05249        133 VETLTADKIVIATG--SRPYRPPDVDFDH--PRIYDSDSILSL-DHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTR  207 (461)
T ss_pred             eEEEEcCEEEEcCC--CCCCCCCCCCCCC--CeEEcHHHhhch-hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence            34789999999999  8999988776532  123443333322 235799999999999999999999999999999987


Q ss_pred             CC-----c-----cccccCCCC-CCeeeccceeEEccC-Cc--EEecCCcEEeecEEEEecCccCCCCCC--C-------
Q 013303          230 VA-----D-----ETHEKQPGY-DNMWLHSMVERANED-GT--VVFRNGRVVSADVIMHCTGYKYNYPFL--E-------  286 (446)
Q Consensus       230 ~~-----~-----~~~~~~~~~-~~v~~~~~v~~i~~~-~~--v~~~dG~~~~~D~vi~atG~~~~~~~l--~-------  286 (446)
                      +.     +     ...+.+.+. .++.....|.++..+ +.  +.+.+|+++++|.||+|+|++|+...+  +       
T Consensus       208 ~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~  287 (461)
T PRK05249        208 DRLLSFLDDEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEAD  287 (461)
T ss_pred             CCcCCcCCHHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEec
Confidence            64     1     111112222 255566788888643 22  556788899999999999999998864  2       


Q ss_pred             CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCC
Q 013303          287 TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       287 ~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~  343 (446)
                      +.|.+.+|++.+          ++.|+||++|++.. ....+.+..||+.+|.++.|.
T Consensus       288 ~~G~i~vd~~~~----------t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~  335 (461)
T PRK05249        288 SRGQLKVNENYQ----------TAVPHIYAVGDVIGFPSLASASMDQGRIAAQHAVGE  335 (461)
T ss_pred             CCCcEeeCCCcc----------cCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcCC
Confidence            334566665554          45899999998764 344567899999999999976

>PRK14694 putative mercuric reductase; Provisional

Probab=100.00  E-value=1.6e-31  Score=269.75  Aligned_cols=299  Identities=18%  Similarity=0.258  Sum_probs=200.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .+||+||||||||++||..|++.|++|+|||+. .+||+|.+.        ||+|++.++++........+.+.. ++++
T Consensus         6 ~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n~--------GciPsk~l~~~a~~~~~~~~~~~~-~g~~   75 (468)
T PRK14694          6 NLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVNI--------GCVPSKIMIRAAHIAHLRRESPFD-DGLS   75 (468)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceecC--------CccccHHHHHHHHHHHHHhhcccc-CCcc
Confidence            479999999999999999999999999999995 799999874        899988766543321111111100 0111


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-------CCC--cE-EeCeEEEEEEEcCCCceEEEEEeCCCceE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG-------VDQ--VV-RLHTEVLNARLVESNKWKVKSRKKDDVVE  151 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~-------l~~--~i-~~~~~V~~v~~~~~~~~~v~~~~~~~~~~  151 (446)
                      .+             ..-++..++.++..+.++.+.       +..  .+ ....+|..++.   ..|+|++.++.  ..
T Consensus        76 ~~-------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~---~~~~V~~~~g~--~~  137 (468)
T PRK14694         76 AQ-------------APVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDE---RTLTVTLNDGG--EQ  137 (468)
T ss_pred             cC-------------CCccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecC---CEEEEEecCCC--eE
Confidence            00             001234455555444433221       100  11 22345666643   56888876542  34


Q ss_pred             EEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          152 EETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       152 ~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      ++.||+||+|||  +.|+.|++||++..  ..+++.+.... ...+++|+|||+|.+|+|+|..|++.+.+|+++.+...
T Consensus       138 ~~~~d~lViATG--s~p~~p~i~G~~~~--~~~~~~~~~~l-~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~  212 (468)
T PRK14694        138 TVHFDRAFIGTG--ARPAEPPVPGLAET--PYLTSTSALEL-DHIPERLLVIGASVVALELAQAFARLGSRVTVLARSRV  212 (468)
T ss_pred             EEECCEEEEeCC--CCCCCCCCCCCCCC--ceEcchhhhch-hcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCC
Confidence            799999999999  89999999998753  23444332221 12468999999999999999999999999999987532


Q ss_pred             ----c----ccc-ccCCCCC-CeeeccceeEEccCCc-EEe-cCCcEEeecEEEEecCccCCCCCCC--------CCCee
Q 013303          232 ----D----ETH-EKQPGYD-NMWLHSMVERANEDGT-VVF-RNGRVVSADVIMHCTGYKYNYPFLE--------TNGIV  291 (446)
Q Consensus       232 ----~----~~~-~~~~~~~-~v~~~~~v~~i~~~~~-v~~-~dG~~~~~D~vi~atG~~~~~~~l~--------~~g~i  291 (446)
                          +    ..+ +.+.+.+ ++..+..|.++..++. +.+ .++.++++|.||+|+|..|+..++.        +.|.+
T Consensus       213 l~~~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i  292 (468)
T PRK14694        213 LSQEDPAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNAGTLRAEQLLVATGRTPNTENLNLESIGVETERGAI  292 (468)
T ss_pred             CCCCCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCCEEEeCEEEEccCCCCCcCCCCchhcCcccCCCeE
Confidence                0    011 1112222 4556678888865443 222 2445799999999999999998752        23456


Q ss_pred             eeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCC
Q 013303          292 TVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       292 ~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~  343 (446)
                      .+|++++          ++.|+||++|++.. ....+.+..||+.+|.++.|.
T Consensus       293 ~vd~~~~----------Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~~~  335 (468)
T PRK14694        293 RIDEHLQ----------TTVSGIYAAGDCTDQPQFVYVAAAGGSRAAINMTGG  335 (468)
T ss_pred             eeCCCcc----------cCCCCEEEEeecCCCcccHHHHHHHHHHHHHHhcCC
Confidence            6666654          55899999998863 344577889999999999875

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=100.00  E-value=6.1e-33  Score=249.53  Aligned_cols=199  Identities=32%  Similarity=0.534  Sum_probs=138.1

Q ss_pred             EEECcChHHHHHHHHHHHCCCc-EEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCCCC
Q 013303            6 AVIGAGAAGLVVGHELLREGHT-VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYP   84 (446)
Q Consensus         6 ~IIGaG~aGl~aA~~l~~~g~~-v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d~~   84 (446)
                      +||||||+||++|.+|++.|++ ++|||+++.+||.|........           +   .++....    ..+.++++.
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~-----------~---~~~~~~~----~~~~~~~~~   62 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTR-----------L---HSPSFFS----SDFGLPDFE   62 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT---------------BSSSCCT----GGSS--CCC
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCc-----------c---ccCcccc----ccccCCccc
Confidence            7999999999999999999998 9999999999999985321100           0   0000000    011111211


Q ss_pred             CCcC-CCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccC
Q 013303           85 FVAR-NYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNG  163 (446)
Q Consensus        85 ~~~~-~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG  163 (446)
                      .... ..+.......+++++++.+|++++++++++.  ++++++|+++++.+ +.|+|+++++    +++.||+||+|||
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~--i~~~~~V~~v~~~~-~~w~v~~~~~----~~~~a~~VVlAtG  135 (203)
T PF13738_consen   63 SFSFDDSPEWRWPHDFPSGEEVLDYLQEYAERFGLE--IRFNTRVESVRRDG-DGWTVTTRDG----RTIRADRVVLATG  135 (203)
T ss_dssp             HSCHHHHHHHHHSBSSEBHHHHHHHHHHHHHHTTGG--EETS--EEEEEEET-TTEEEEETTS-----EEEEEEEEE---
T ss_pred             ccccccCCCCCCCcccCCHHHHHHHHHHHHhhcCcc--cccCCEEEEEEEec-cEEEEEEEec----ceeeeeeEEEeee
Confidence            1000 0000011356789999999999999999998  99999999999997 6699999776    3788999999999


Q ss_pred             CCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          164 HFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       164 ~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      .++.|+.|.+|| ..+. ..+|+.++.++..+++|+|+|||+|.||+|+|..|++.+++|++++|++.
T Consensus       136 ~~~~p~~p~~~g-~~~~-~~~h~~~~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~  201 (203)
T PF13738_consen  136 HYSHPRIPDIPG-SAFR-PIIHSADWRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI  201 (203)
T ss_dssp             SSCSB---S-TT-GGCS-EEEEGGG-STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred             ccCCCCcccccc-cccc-ceEehhhcCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence            999999999999 2222 78999999999999999999999999999999999999999999999863

...

>PTZ00058 glutathione reductase; Provisional

Probab=100.00  E-value=5.8e-32  Score=274.57  Aligned_cols=298  Identities=18%  Similarity=0.239  Sum_probs=196.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .+||+||||||||++||..+++.|.+|+|+|+. .+||+|.+.        ||+|+|.++.+........+...  +++.
T Consensus        48 ~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~--------GCiPsK~l~~~a~~~~~~~~~~~--~Gi~  116 (561)
T PTZ00058         48 VYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNV--------GCVPKKIMFNAASIHDILENSRH--YGFD  116 (561)
T ss_pred             cccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-ccccccccc--------CCCCCchhhhhcccHHHHHHHHh--cCCC
Confidence            579999999999999999999999999999995 799999986        99999988876543221111111  1111


Q ss_pred             ---CCCCCcCCCCCCCCCCCCC-CHHHH----HHHHHHHHHHhCCCCcEEeCeE-EEE-----E---EE-------cCCC
Q 013303           82 ---AYPFVARNYEGSVDLRRYP-GHEEV----LRYLQNFAREFGVDQVVRLHTE-VLN-----A---RL-------VESN  137 (446)
Q Consensus        82 ---d~~~~~~~~~~~~~~~~~~-~~~~v----~~yl~~~~~~~~l~~~i~~~~~-V~~-----v---~~-------~~~~  137 (446)
                         .+.|.           ... ...++    .+.+.+..++.+++  +..+.- +.+     |   ..       .+++
T Consensus       117 ~~~~~d~~-----------~~~~~~~~~~~~~~~~~~~~l~~~gv~--~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~  183 (561)
T PTZ00058        117 TQFSFNLP-----------LLVERRDKYIRRLNDIYRQNLKKDNVE--YFEGKGSLLSENQVLIKKVSQVDGEADESDDD  183 (561)
T ss_pred             ccCccCHH-----------HHHHHHHHHHHHHHHHHHHHHhhCCcE--EEEEEEEEecCCEEEeeccccccccccccccc
Confidence               01110           000 11222    22233334445555  433321 111     0   00       0001


Q ss_pred             ceEEEE----EeCCCceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHH
Q 013303          138 KWKVKS----RKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIK  213 (446)
Q Consensus       138 ~~~v~~----~~~~~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia  213 (446)
                      ..+|..    ...++  .+++||+||||||  +.|..|++||.+.    ++++.++.....  +++|+|||+|.+|+|+|
T Consensus       184 ~~~v~~~~~~~~~~g--~~i~ad~lVIATG--S~P~~P~IpG~~~----v~ts~~~~~l~~--pk~VvIIGgG~iGlE~A  253 (561)
T PTZ00058        184 EVTIVSAGVSQLDDG--QVIEGKNILIAVG--NKPIFPDVKGKEF----TISSDDFFKIKE--AKRIGIAGSGYIAVELI  253 (561)
T ss_pred             cceeeeccceecCCC--cEEECCEEEEecC--CCCCCCCCCCcee----EEEHHHHhhccC--CCEEEEECCcHHHHHHH
Confidence            122211    01111  3699999999999  8999999999752    445544433322  79999999999999999


Q ss_pred             HHHhccCCEEEEEEecCC-----ccc-----cccCCCC-CCeeeccceeEEccCC--c--EEecCC-cEEeecEEEEecC
Q 013303          214 RDLAGFAKEVHIASRSVA-----DET-----HEKQPGY-DNMWLHSMVERANEDG--T--VVFRNG-RVVSADVIMHCTG  277 (446)
Q Consensus       214 ~~l~~~~~~V~l~~r~~~-----~~~-----~~~~~~~-~~v~~~~~v~~i~~~~--~--v~~~dG-~~~~~D~vi~atG  277 (446)
                      ..+++.|++|+++.+.+.     +..     .+.+.+. -++..+..|.++.+++  .  +.+.++ +++++|.|++|+|
T Consensus       254 ~~l~~~G~~Vtli~~~~~il~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~G  333 (561)
T PTZ00058        254 NVVNRLGAESYIFARGNRLLRKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVG  333 (561)
T ss_pred             HHHHHcCCcEEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcC
Confidence            999999999999998764     111     1122222 2566677788887532  2  334454 4699999999999


Q ss_pred             ccCCCCCCC--------CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc---------------------------
Q 013303          278 YKYNYPFLE--------TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK---------------------------  322 (446)
Q Consensus       278 ~~~~~~~l~--------~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~---------------------------  322 (446)
                      ++|+..+|.        +.|.|.+|++++          ++.|+||++|++..                           
T Consensus       334 r~Pn~~~L~l~~~~~~~~~G~I~VDe~lq----------Ts~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  403 (561)
T PTZ00058        334 RSPNTEDLNLKALNIKTPKGYIKVDDNQR----------TSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKEN  403 (561)
T ss_pred             CCCCccccCccccceecCCCeEEECcCCc----------cCCCCEEEeEeccCccccccccccccccccccccccccccc
Confidence            999988763        345677777655          66999999998865                           


Q ss_pred             --------cCchhHHHHHHHHHHHHHcCC
Q 013303          323 --------VIPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       323 --------~~~~~~~~~qa~~~a~~l~g~  343 (446)
                              ....+.+..||+.+|.++.|.
T Consensus       404 ~~~~~~~~~~la~~A~~~g~~aa~ni~g~  432 (561)
T PTZ00058        404 TSGESYYNVQLTPVAINAGRLLADRLFGP  432 (561)
T ss_pred             cccccccCcCchHHHHHHHHHHHHHHhCC
Confidence                    233467889999999999875

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=2.1e-31  Score=268.57  Aligned_cols=294  Identities=18%  Similarity=0.181  Sum_probs=193.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCC-ccCceeecCCCCCccc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF   80 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~-~y~~l~~~~~~~~~~~   80 (446)
                      ++||+||||||+|+.+|..|++.|++|+|+|+.+.+||+|.+.        ||.|++.++... .+..++ +.......+
T Consensus         4 ~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~--------gciP~K~l~~~a~~~~~~~-~~~~~g~~~   74 (471)
T PRK06467          4 KTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNV--------GCIPSKALLHVAKVIEEAK-ALAEHGIVF   74 (471)
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCC--------CcccHHHHHHHHHHHHHHh-hhhhcCccc
Confidence            5899999999999999999999999999999988899999875        899988766433 222221 111100000


Q ss_pred             CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHH-----------HHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCc
Q 013303           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQN-----------FAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV  149 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~-----------~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~  149 (446)
                      ..               ...+...+.++...           ..+..+++  +..+ ++..+     +..+|.+...+++
T Consensus        75 ~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~--~~~g-~a~~~-----~~~~v~v~~~~g~  131 (471)
T PRK06467         75 GE---------------PKIDIDKMRARKEKVVKQLTGGLAGMAKGRKVT--VVNG-LGKFT-----GGNTLEVTGEDGK  131 (471)
T ss_pred             CC---------------CCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEE-EEEEc-----cCCEEEEecCCCc
Confidence            00               01122344433333           23334554  4333 33332     2234444433333


Q ss_pred             eEEEEEcEEEEccCCCCCCc-cCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEe
Q 013303          150 VEEETFDAVVVCNGHFSVPR-LAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR  228 (446)
Q Consensus       150 ~~~~~~d~VVvAtG~~s~p~-~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r  228 (446)
                      ..++.||+||||||  +.|. .|.+++...   .++.+.+..... ..+++|+|||+|.+|+|+|..+++.|.+|+++.+
T Consensus       132 ~~~~~~d~lViATG--s~p~~~p~~~~~~~---~v~~~~~~~~~~-~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~  205 (471)
T PRK06467        132 TTVIEFDNAIIAAG--SRPIQLPFIPHDDP---RIWDSTDALELK-EVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEM  205 (471)
T ss_pred             eEEEEcCEEEEeCC--CCCCCCCCCCCCCC---cEEChHHhhccc-cCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEec
Confidence            35799999999999  8887 455555322   233333322222 2358999999999999999999999999999998


Q ss_pred             cCC-----cc-----ccccCCCCCCeeeccceeEEccCC-c--EEecCC----cEEeecEEEEecCccCCCCCCC-----
Q 013303          229 SVA-----DE-----THEKQPGYDNMWLHSMVERANEDG-T--VVFRNG----RVVSADVIMHCTGYKYNYPFLE-----  286 (446)
Q Consensus       229 ~~~-----~~-----~~~~~~~~~~v~~~~~v~~i~~~~-~--v~~~dG----~~~~~D~vi~atG~~~~~~~l~-----  286 (446)
                      .+.     +.     ..+.+.+..++..+..|.++..++ .  +.+.++    +++++|.||+|+|++|+.++|.     
T Consensus       206 ~~~il~~~d~~~~~~~~~~l~~~v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~g  285 (471)
T PRK06467        206 FDQVIPAADKDIVKVFTKRIKKQFNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAG  285 (471)
T ss_pred             CCCCCCcCCHHHHHHHHHHHhhceEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcC
Confidence            764     11     111222224566677788886332 2  445443    3589999999999999998642     


Q ss_pred             ----CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCC
Q 013303          287 ----TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       287 ----~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~  343 (446)
                          +.|.|.+|++++          ++.|+||++|++.. ....+.+..||+.+|.++.|.
T Consensus       286 l~~~~~G~I~Vd~~~~----------t~~p~VyAiGDv~~~~~la~~A~~eG~~aa~~i~g~  337 (471)
T PRK06467        286 VEVDERGFIRVDKQCR----------TNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGK  337 (471)
T ss_pred             ceECCCCcEeeCCCcc----------cCCCCEEEehhhcCCcccHHHHHHHHHHHHHHHcCC
Confidence                345566666655          55899999998753 345677899999999999875

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=4e-31  Score=267.04  Aligned_cols=293  Identities=19%  Similarity=0.234  Sum_probs=195.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCc-cCceeecCCCCCccc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSL-YKSLRVNLPRELMGF   80 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~-y~~l~~~~~~~~~~~   80 (446)
                      .+||+||||||||++||..|++.|++|+|+|+.. +||+|.+.        ||.|++.+++... ++..+..        
T Consensus         4 ~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~--------gciP~k~l~~~~~~~~~~~~~--------   66 (462)
T PRK06416          4 EYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNR--------GCIPSKALLHAAERADEARHS--------   66 (462)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeec--------ccCCcHHHHHhhhHHHHHHHH--------
Confidence            5799999999999999999999999999999976 99999875        8999887665442 2221110        


Q ss_pred             CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHH-----------HHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCc
Q 013303           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQN-----------FAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV  149 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~-----------~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~  149 (446)
                      ..|.+..        ....+...++.+|...           ..++.+++  +..+ +++.++.   ..++|...++  .
T Consensus        67 ~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g-~~~~~~~---~~~~v~~~~~--~  130 (462)
T PRK06416         67 EDFGIKA--------ENVGIDFKKVQEWKNGVVNRLTGGVEGLLKKNKVD--IIRG-EAKLVDP---NTVRVMTEDG--E  130 (462)
T ss_pred             HhcCccc--------CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEE-EEEEccC---CEEEEecCCC--c
Confidence            1111100        0112344566666443           34445555  4443 3444332   2344433221  1


Q ss_pred             eEEEEEcEEEEccCCCCCCccCCCCCCCCCCcc-EEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEe
Q 013303          150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGK-QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR  228 (446)
Q Consensus       150 ~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~-~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r  228 (446)
                       .++.||+||||||  +.|..|  ||.+. .+. +.++.+.... ...+++|+|||+|.+|+|+|..|++.+.+|+++.+
T Consensus       131 -~~~~~d~lViAtG--s~p~~~--pg~~~-~~~~v~~~~~~~~~-~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~  203 (462)
T PRK06416        131 -QTYTAKNIILATG--SRPREL--PGIEI-DGRVIWTSDEALNL-DEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEA  203 (462)
T ss_pred             -EEEEeCEEEEeCC--CCCCCC--CCCCC-CCCeEEcchHhhCc-cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEc
Confidence             4789999999999  777654  56542 233 3333332222 23468999999999999999999999999999998


Q ss_pred             cCC-----cc----cc-ccCCCC-CCeeeccceeEEccCC-c--EEecCC---cEEeecEEEEecCccCCCCCCC--C--
Q 013303          229 SVA-----DE----TH-EKQPGY-DNMWLHSMVERANEDG-T--VVFRNG---RVVSADVIMHCTGYKYNYPFLE--T--  287 (446)
Q Consensus       229 ~~~-----~~----~~-~~~~~~-~~v~~~~~v~~i~~~~-~--v~~~dG---~~~~~D~vi~atG~~~~~~~l~--~--  287 (446)
                      .+.     +.    .+ +.+.+. .++..+..|.++..++ .  +.+.+|   +++++|.||+|+|++|+..++.  .  
T Consensus       204 ~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~g  283 (462)
T PRK06416        204 LPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELG  283 (462)
T ss_pred             CCCcCCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcC
Confidence            764     10    11 112222 2566677888887543 2  445666   6789999999999999988752  2  


Q ss_pred             ----CCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCCC
Q 013303          288 ----NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGRI  344 (446)
Q Consensus       288 ----~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~~  344 (446)
                          .|.+.+|++.+          ++.|+||++|++.. ....+.+..||+.+|.++.|..
T Consensus       284 l~~~~g~i~vd~~~~----------t~~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~~  335 (462)
T PRK06416        284 VKTDRGFIEVDEQLR----------TNVPNIYAIGDIVGGPMLAHKASAEGIIAAEAIAGNP  335 (462)
T ss_pred             CeecCCEEeECCCCc----------cCCCCEEEeeecCCCcchHHHHHHHHHHHHHHHcCCC
Confidence                34455665544          55899999998864 3455778999999999999853

>PRK06370 mercuric reductase; Validated

Probab=100.00  E-value=1.8e-31  Score=269.28  Aligned_cols=290  Identities=21%  Similarity=0.235  Sum_probs=194.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCcc-CceeecCCCCCccc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLY-KSLRVNLPRELMGF   80 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y-~~l~~~~~~~~~~~   80 (446)
                      ++||+||||||||++||..|++.|++|+|+|+. .+||.|.+.        ||+|++.++..... ..++. ..  .+++
T Consensus         5 ~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~--------gciPsk~l~~~a~~~~~~~~-~~--~~g~   72 (463)
T PRK06370          5 RYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVNT--------GCVPTKTLIASARAAHLARR-AA--EYGV   72 (463)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceecc--------ccCcHHHHHHHHHHHHHHHH-HH--hcCc
Confidence            479999999999999999999999999999985 789999875        89998876654321 11111 00  0111


Q ss_pred             CCCCCCcCCCCCCCCCCCCCCHHHHHHHHH-----------HHHHHh-CCCCcEEeCeEEEEEEEcCCCceEEEEEeCCC
Q 013303           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQ-----------NFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDD  148 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~-----------~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~  148 (446)
                      +   ...         ..-+...++.++..           ...++. +++  ++.++.+. +     +..+|++. +  
T Consensus        73 ~---~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--v~~g~~~~-~-----~~~~v~v~-~--  129 (463)
T PRK06370         73 S---VGG---------PVSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVD--VFRGHARF-E-----SPNTVRVG-G--  129 (463)
T ss_pred             c---cCc---------cCccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcE--EEEEEEEE-c-----cCCEEEEC-c--
Confidence            1   000         00112334443332           333333 444  55554432 1     23455552 1  


Q ss_pred             ceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEe
Q 013303          149 VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR  228 (446)
Q Consensus       149 ~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r  228 (446)
                        .++.||+||+|||  +.|+.|++||.+..  .++++.+..... ..+++|+|||+|.+|+|+|..|++.|.+|+++.+
T Consensus       130 --~~~~~d~lViATG--s~p~~p~i~G~~~~--~~~~~~~~~~~~-~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~  202 (463)
T PRK06370        130 --ETLRAKRIFINTG--ARAAIPPIPGLDEV--GYLTNETIFSLD-ELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIER  202 (463)
T ss_pred             --EEEEeCEEEEcCC--CCCCCCCCCCCCcC--ceEcchHhhCcc-ccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEc
Confidence              3689999999999  89999999998652  234444333222 3478999999999999999999999999999998


Q ss_pred             cCC-----c----ccc-ccCCCCC-CeeeccceeEEccCC-c--EEec--C-CcEEeecEEEEecCccCCCCCC--C---
Q 013303          229 SVA-----D----ETH-EKQPGYD-NMWLHSMVERANEDG-T--VVFR--N-GRVVSADVIMHCTGYKYNYPFL--E---  286 (446)
Q Consensus       229 ~~~-----~----~~~-~~~~~~~-~v~~~~~v~~i~~~~-~--v~~~--d-G~~~~~D~vi~atG~~~~~~~l--~---  286 (446)
                      .+.     +    ..+ ..+.+.+ ++..+..|.++..++ .  +.+.  + ++++++|.||+|+|++|+...|  +   
T Consensus       203 ~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g  282 (463)
T PRK06370        203 GPRLLPREDEDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAG  282 (463)
T ss_pred             CCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhC
Confidence            764     1    011 1122222 556667888887543 2  3332  3 4568999999999999998843  2   


Q ss_pred             ----CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCC
Q 013303          287 ----TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       287 ----~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~  343 (446)
                          +.|.+.+|++++          ++.|+||++|++... .....+..||+.+|+++.+.
T Consensus       283 ~~~~~~G~i~vd~~l~----------t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~  334 (463)
T PRK06370        283 VETDARGYIKVDDQLR----------TTNPGIYAAGDCNGRGAFTHTAYNDARIVAANLLDG  334 (463)
T ss_pred             ceECCCCcEeECcCCc----------CCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhCC
Confidence                345566666555          558999999988643 33466789999999999875

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=99.98  E-value=5.8e-31  Score=268.03  Aligned_cols=275  Identities=18%  Similarity=0.199  Sum_probs=205.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .+||+||||||||++||..|++.|++|+|++.  .+||++.....                   +.              
T Consensus       212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~~~~~-------------------~~--------------  256 (515)
T TIGR03140       212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVKDTVG-------------------IE--------------  256 (515)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccccCcC-------------------cc--------------
Confidence            47999999999999999999999999999985  58998764210                   00              


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                      .++           ........++.+++.++++++++.  ++.+++|.+++... +.|.+++.++.    .+.||+||+|
T Consensus       257 ~~~-----------~~~~~~~~~l~~~l~~~l~~~gv~--i~~~~~V~~I~~~~-~~~~v~~~~g~----~i~~d~lIlA  318 (515)
T TIGR03140       257 NLI-----------SVPYTTGSQLAANLEEHIKQYPID--LMENQRAKKIETED-GLIVVTLESGE----VLKAKSVIVA  318 (515)
T ss_pred             ccc-----------ccCCCCHHHHHHHHHHHHHHhCCe--EEcCCEEEEEEecC-CeEEEEECCCC----EEEeCEEEEC
Confidence            000           001124578889999999999988  88899999998765 67888776543    6999999999


Q ss_pred             cCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc---c-cccc
Q 013303          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD---E-THEK  237 (446)
Q Consensus       162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~---~-~~~~  237 (446)
                      ||  +.|+.|++||.+.+.+..++.....+...+.+++|+|||+|.+|+|+|..|+..+++|+++.+.+..   . ....
T Consensus       319 tG--a~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~~~~l~~~  396 (515)
T TIGR03140       319 TG--ARWRKLGVPGEKEYIGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKADKVLQDK  396 (515)
T ss_pred             CC--CCcCCCCCCCHHHcCCCeEEEeeccChhhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCChhHHHHHH
Confidence            99  7788899999766656556655444444567899999999999999999999999999999987641   1 1122


Q ss_pred             CCC--CCCeeeccceeEEccCC-c---EEecCC-----cEEeecEEEEecCccCCCCCCC------CCCeeeeCCCCccc
Q 013303          238 QPG--YDNMWLHSMVERANEDG-T---VVFRNG-----RVVSADVIMHCTGYKYNYPFLE------TNGIVTVDDNRVGP  300 (446)
Q Consensus       238 ~~~--~~~v~~~~~v~~i~~~~-~---v~~~dG-----~~~~~D~vi~atG~~~~~~~l~------~~g~i~~~~~~~~~  300 (446)
                      +.+  .-++..+..+.++.+++ .   |.+.++     +++++|.||+|+|+.|+.+++.      +.|.|.+|++.+  
T Consensus       397 l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~~~~~~~G~I~vd~~~~--  474 (515)
T TIGR03140       397 LKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDAVELNRRGEIVIDERGR--  474 (515)
T ss_pred             HhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHHhhhcccCCCCeEEECCCCC--
Confidence            222  23566677888887652 2   666543     3588999999999999988764      345566666655  


Q ss_pred             ccccccCCCCCCCeEEecCCCccC--chhHHHHHHHHHHHHHc
Q 013303          301 LYKHVFPPVLAPGLSFVGIPQKVI--PFPFFELQSKWIASVLS  341 (446)
Q Consensus       301 l~~~~~~~~~~p~l~~iG~~~~~~--~~~~~~~qa~~~a~~l~  341 (446)
                              ++.|+||++|++....  ....+..||..+|..+.
T Consensus       475 --------Ts~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~i~  509 (515)
T TIGR03140       475 --------TSVPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAF  509 (515)
T ss_pred             --------CCCCCEEEcccccCCccceEEEEEccHHHHHHHHH
Confidence                    5689999999886532  34567778887777654

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK14727 putative mercuric reductase; Provisional

Probab=99.98  E-value=1.8e-31  Score=269.71  Aligned_cols=301  Identities=17%  Similarity=0.199  Sum_probs=191.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      ++||+||||||+|+++|..|++.|.+|+|+|+.+.+||+|.+.        ||+|++.+++...+.......+.  +++.
T Consensus        16 ~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~--------GciPsk~l~~~a~~~~~~~~~~~--~g~~   85 (479)
T PRK14727         16 QLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNV--------GCVPSKILIRAAQLAHQQRSNPF--DGVE   85 (479)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccc--------cccccHHHHHHHHHHHHHhhccc--cCcc
Confidence            5799999999999999999999999999999988999999975        89999877654433222211111  1111


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhC---CCCcEEeCeEEEEE----EEcCCCceEEEEEeCCCceEEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG---VDQVVRLHTEVLNA----RLVESNKWKVKSRKKDDVVEEET  154 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~---l~~~i~~~~~V~~v----~~~~~~~~~v~~~~~~~~~~~~~  154 (446)
                      ...            +. .+...+..+......+..   ....+..+..|.-+    ...+.+.+.|...+  ++..++.
T Consensus        86 ~~~------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~--g~~~~~~  150 (479)
T PRK14727         86 AVA------------PS-IDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHD--GGERVLA  150 (479)
T ss_pred             cCC------------Cc-cCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCC--CceEEEE
Confidence            000            00 112233222222211110   00000111111111    11221445555433  3334799


Q ss_pred             EcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC---
Q 013303          155 FDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA---  231 (446)
Q Consensus       155 ~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~---  231 (446)
                      ||+||||||  +.|+.|++||.+..  ...++.+.... ...+++|+|||+|.+|+|+|..+++.|.+|+++.+...   
T Consensus       151 ~d~lViATG--s~p~~p~i~G~~~~--~~~~~~~~l~~-~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~~  225 (479)
T PRK14727        151 ADRCLIATG--STPTIPPIPGLMDT--PYWTSTEALFS-DELPASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLFR  225 (479)
T ss_pred             eCEEEEecC--CCCCCCCCCCcCcc--ceecchHHhcc-ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCCc
Confidence            999999999  89999999997542  22222221111 12468999999999999999999999999999987532   


Q ss_pred             -ccc----c-ccCCCCC-CeeeccceeEEccCC-c--EEecCCcEEeecEEEEecCccCCCCCCC---------CCCeee
Q 013303          232 -DET----H-EKQPGYD-NMWLHSMVERANEDG-T--VVFRNGRVVSADVIMHCTGYKYNYPFLE---------TNGIVT  292 (446)
Q Consensus       232 -~~~----~-~~~~~~~-~v~~~~~v~~i~~~~-~--v~~~dG~~~~~D~vi~atG~~~~~~~l~---------~~g~i~  292 (446)
                       +..    + +.+.+.+ ++..+..|+++..++ .  +.+.+ .++++|.||+|+|+.|+..+|.         ..|.|.
T Consensus       226 ~d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~-g~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~  304 (479)
T PRK14727        226 EDPLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGH-GELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIV  304 (479)
T ss_pred             chHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcC-CeEEeCEEEEccCCCCCccCCCchhhCceecCCCCEE
Confidence             111    1 1122222 455667788886432 2  33334 4689999999999999988642         234566


Q ss_pred             eCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCC
Q 013303          293 VDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       293 ~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~  343 (446)
                      +|+.++          ++.|+||++|++... ...+.+..||+.+|.++.|.
T Consensus       305 Vd~~~~----------Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~  346 (479)
T PRK14727        305 VNPAME----------TSAPDIYAAGDCSDLPQFVYVAAAAGSRAGINMTGG  346 (479)
T ss_pred             ECCCee----------cCCCCEEEeeecCCcchhhhHHHHHHHHHHHHHcCC
Confidence            666554          568999999998743 44577889999999999875

>PRK07846 mycothione reductase; Reviewed

Probab=99.98  E-value=1.1e-31  Score=268.98  Aligned_cols=295  Identities=17%  Similarity=0.209  Sum_probs=195.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCcc-CceeecCCCCCccc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLY-KSLRVNLPRELMGF   80 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y-~~l~~~~~~~~~~~   80 (446)
                      .+||+||||||+|.+||..  ..|.+|+|+|+ +.+||+|.+.        ||+|+|.++++... ..++. .+.  ++.
T Consensus         1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~-~~~GGtC~n~--------GCiPsK~l~~~a~~~~~~~~-~~~--~g~   66 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDER--FADKRIAIVEK-GTFGGTCLNV--------GCIPTKMFVYAADVARTIRE-AAR--LGV   66 (451)
T ss_pred             CCCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCcccCc--------CcchhHHHHHHHHHHHHHHH-HHh--CCc
Confidence            3799999999999998875  46999999998 5799999986        99999977755432 22211 111  111


Q ss_pred             CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhC---CCCc-E-EeCeEEEEEE-EcCCCceEEEEEeCCCceEEEE
Q 013303           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG---VDQV-V-RLHTEVLNAR-LVESNKWKVKSRKKDDVVEEET  154 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~---l~~~-i-~~~~~V~~v~-~~~~~~~~v~~~~~~~~~~~~~  154 (446)
                      . .            ...-....++.++.....+++.   .... + ..+.++..=+ ... +..+|++.++.    ++.
T Consensus        67 ~-~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~-~~~~V~v~~g~----~~~  128 (451)
T PRK07846         67 D-A------------ELDGVRWPDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFI-GPKTLRTGDGE----EIT  128 (451)
T ss_pred             c-C------------CCCcCCHHHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEe-cCCEEEECCCC----EEE
Confidence            0 0            0001244566666655544431   1100 0 0111111100 001 34567665432    689


Q ss_pred             EcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC---
Q 013303          155 FDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA---  231 (446)
Q Consensus       155 ~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~---  231 (446)
                      ||+||||||  +.|+.|++||.+..  .+..+.+.... ...+++|+|||+|.+|+|+|..|++.|.+|+++.+++.   
T Consensus       129 ~d~lViATG--s~p~~p~i~g~~~~--~~~~~~~~~~l-~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~  203 (451)
T PRK07846        129 ADQVVIAAG--SRPVIPPVIADSGV--RYHTSDTIMRL-PELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR  203 (451)
T ss_pred             eCEEEEcCC--CCCCCCCCCCcCCc--cEEchHHHhhh-hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc
Confidence            999999999  89999999986532  12222222111 22468999999999999999999999999999999764   


Q ss_pred             --cc----ccccCCCC-CCeeeccceeEEccCC-c--EEecCCcEEeecEEEEecCccCCCCCCC---------CCCeee
Q 013303          232 --DE----THEKQPGY-DNMWLHSMVERANEDG-T--VVFRNGRVVSADVIMHCTGYKYNYPFLE---------TNGIVT  292 (446)
Q Consensus       232 --~~----~~~~~~~~-~~v~~~~~v~~i~~~~-~--v~~~dG~~~~~D~vi~atG~~~~~~~l~---------~~g~i~  292 (446)
                        +.    .+.++.+. -++..+..|.+++.++ .  +.+.+|+++++|.||+|+|++|+.++|.         +.|.+.
T Consensus       204 ~~d~~~~~~l~~l~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~  283 (451)
T PRK07846        204 HLDDDISERFTELASKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVV  283 (451)
T ss_pred             ccCHHHHHHHHHHHhcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEe
Confidence              11    11112222 2556677888886543 2  5667889999999999999999999863         334455


Q ss_pred             eCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCC
Q 013303          293 VDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       293 ~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~  343 (446)
                      +|++++          ++.|+||++|++... ...+.+..||+++++++.+.
T Consensus       284 Vd~~~~----------Ts~p~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~  325 (451)
T PRK07846        284 VDEYQR----------TSAEGVFALGDVSSPYQLKHVANHEARVVQHNLLHP  325 (451)
T ss_pred             ECCCcc----------cCCCCEEEEeecCCCccChhHHHHHHHHHHHHHcCC
Confidence            665554          558999999998743 44577889999999999865

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=99.98  E-value=2e-30  Score=265.92  Aligned_cols=274  Identities=21%  Similarity=0.278  Sum_probs=203.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .+||+|||||||||+||..|++.|++|+|||+. .+||.+.....                                 ..
T Consensus         4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~~~~---------------------------------i~   49 (555)
T TIGR03143         4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITITSE---------------------------------VV   49 (555)
T ss_pred             cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEeccc---------------------------------cc
Confidence            479999999999999999999999999999995 78998764210                                 00


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                      ++|.           ....++.++.+++.+.+++++++  + .+++|+.++... ..+.|.+.++     .+.+++||+|
T Consensus        50 ~~pg-----------~~~~~~~~l~~~l~~~~~~~gv~--~-~~~~V~~i~~~~-~~~~V~~~~g-----~~~a~~lVlA  109 (555)
T TIGR03143        50 NYPG-----------ILNTTGPELMQEMRQQAQDFGVK--F-LQAEVLDVDFDG-DIKTIKTARG-----DYKTLAVLIA  109 (555)
T ss_pred             cCCC-----------CcCCCHHHHHHHHHHHHHHcCCE--E-eccEEEEEEecC-CEEEEEecCC-----EEEEeEEEEC
Confidence            1111           11234578889999999999987  4 478899988754 4567766433     5789999999


Q ss_pred             cCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc----ccccc
Q 013303          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD----ETHEK  237 (446)
Q Consensus       162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~----~~~~~  237 (446)
                      ||  +.|+.|++||.+.+.+..++.+...+...+.+++|+|||+|.+|+|+|..|++.+++|+++.|.+..    ....+
T Consensus       110 TG--a~p~~~~ipG~~~~~~~~v~~~~~~~~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~~~~~~~~  187 (555)
T TIGR03143       110 TG--ASPRKLGFPGEEEFTGRGVAYCATCDGEFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTCAKLIAEK  187 (555)
T ss_pred             CC--CccCCCCCCCHHHhCCceEEEEeecChhhcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCccccCHHHHHH
Confidence            99  7899999999876777777776666666678999999999999999999999999999999998741    11112


Q ss_pred             CCC--CCCeeeccceeEEccCCcE---Ee---cCCcEE----eecE----EEEecCccCCCCCCC------CCCeeeeCC
Q 013303          238 QPG--YDNMWLHSMVERANEDGTV---VF---RNGRVV----SADV----IMHCTGYKYNYPFLE------TNGIVTVDD  295 (446)
Q Consensus       238 ~~~--~~~v~~~~~v~~i~~~~~v---~~---~dG~~~----~~D~----vi~atG~~~~~~~l~------~~g~i~~~~  295 (446)
                      +..  ...+..+..|.++.+++.+   .+   .+|++.    ++|.    ||+|+|+.|+..++.      +.|.|.+|+
T Consensus       188 ~~~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~~l~l~~~G~I~vd~  267 (555)
T TIGR03143       188 VKNHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKGVVELDKRGYIPTNE  267 (555)
T ss_pred             HHhCCCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHhhhcccCCCCeEEeCC
Confidence            222  2356667788888765542   22   357643    3666    999999999988754      345666666


Q ss_pred             CCcccccccccCCCCCCCeEEecCCCc--cCchhHHHHHHHHHHHHHc
Q 013303          296 NRVGPLYKHVFPPVLAPGLSFVGIPQK--VIPFPFFELQSKWIASVLS  341 (446)
Q Consensus       296 ~~~~~l~~~~~~~~~~p~l~~iG~~~~--~~~~~~~~~qa~~~a~~l~  341 (446)
                      +++          ++.|+||++|++..  ......+..||+.+|.++.
T Consensus       268 ~~~----------Ts~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i~  305 (555)
T TIGR03143       268 DME----------TNVPGVYAAGDLRPKELRQVVTAVADGAIAATSAE  305 (555)
T ss_pred             ccc----------cCCCCEEEceeccCCCcchheeHHhhHHHHHHHHH
Confidence            655          55899999998752  2234567788888777764

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR02053 MerA mercuric reductase

Probab=99.98  E-value=2.1e-31  Score=269.05  Aligned_cols=297  Identities=20%  Similarity=0.226  Sum_probs=195.8

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d   82 (446)
                      +||+||||||||++||..|++.|++|+|+|+.. +||+|.+.        ||+|++.++......+......   +++..
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~--------gciPsk~l~~~~~~~~~~~~~~---~g~~~   68 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNV--------GCVPSKMLLRAAEVAHYARKPP---FGGLA   68 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeee--------cEEccHHHHHHHHHHHHhhccC---ccccc
Confidence            599999999999999999999999999999864 99999875        8999987665442211111110   11100


Q ss_pred             CCCCcCCCCCCCCCCCCCCHHHHHHHH-----HHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcE
Q 013303           83 YPFVARNYEGSVDLRRYPGHEEVLRYL-----QNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA  157 (446)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl-----~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~  157 (446)
                      ......      ........+++..++     ....++++++  +..+ ++..+     +..+|++.++   ...+.||+
T Consensus        69 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~--~~~g-~~~~~-----~~~~v~v~~g---~~~~~~~~  131 (463)
T TIGR02053        69 ATVAVD------FGELLEGKREVVEELRHEKYEDVLSSYGVD--YLRG-RARFK-----DPKTVKVDLG---REVRGAKR  131 (463)
T ss_pred             CCCccC------HHHHHHHHHHHHHHHhhhhHHHHHHhCCcE--EEEE-EEEEc-----cCCEEEEcCC---eEEEEeCE
Confidence            000000      000111123333333     2344555665  4433 33322     2356666442   23588999


Q ss_pred             EEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC-----c
Q 013303          158 VVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-----D  232 (446)
Q Consensus       158 VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~-----~  232 (446)
                      ||+|||  +.|+.|++||.+..  .++++.+..... ..+++|+|||+|.+|+|+|..|++.+.+|+++.+.+.     +
T Consensus       132 lIiATG--s~p~~p~i~G~~~~--~~~~~~~~~~~~-~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d  206 (463)
T TIGR02053       132 FLIATG--ARPAIPPIPGLKEA--GYLTSEEALALD-RIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPREE  206 (463)
T ss_pred             EEEcCC--CCCCCCCCCCcccC--ceECchhhhCcc-cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCccC
Confidence            999999  89999999998754  244443333222 2358999999999999999999999999999998764     1


Q ss_pred             ----ccc-ccCCCC-CCeeeccceeEEccCCc---EEecC---CcEEeecEEEEecCccCCCCCC--C-------CCCee
Q 013303          233 ----ETH-EKQPGY-DNMWLHSMVERANEDGT---VVFRN---GRVVSADVIMHCTGYKYNYPFL--E-------TNGIV  291 (446)
Q Consensus       233 ----~~~-~~~~~~-~~v~~~~~v~~i~~~~~---v~~~d---G~~~~~D~vi~atG~~~~~~~l--~-------~~g~i  291 (446)
                          ..+ +.+.+. -++.....|.++..++.   +.+.+   ++++++|.||+|+|++|+.+.|  +       +.|.+
T Consensus       207 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i  286 (463)
T TIGR02053       207 PEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGI  286 (463)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcE
Confidence                111 112222 25566677888865432   44432   3578999999999999998843  2       33456


Q ss_pred             eeCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCC
Q 013303          292 TVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       292 ~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~  343 (446)
                      .+|+.++          ++.|+||++|++... ...+.+..||+.+|.++.+.
T Consensus       287 ~vd~~~~----------Ts~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~  329 (463)
T TIGR02053       287 LVDETLR----------TSNPGIYAAGDVTGGLQLEYVAAKEGVVAAENALGG  329 (463)
T ss_pred             eECCCcc----------CCCCCEEEeeecCCCcccHhHHHHHHHHHHHHhcCC
Confidence            6665554          558999999988653 34577899999999999885

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=99.97  E-value=4.6e-31  Score=265.37  Aligned_cols=302  Identities=18%  Similarity=0.259  Sum_probs=195.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHC-CCcEEEEeeC--------CCcCceeeeCCCCCCCCCCCCCCCCCccCCcc-Cceee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKG--------EQVGGSWIYTSETESDPLGVDPNRYPVHSSLY-KSLRV   71 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~-g~~v~v~e~~--------~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y-~~l~~   71 (446)
                      .+||+||||||+|..||..+++. |.+|+|+|+.        ..+||+|.+.        ||+|+|.++++... ..++.
T Consensus         3 ~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~--------GCiPsK~l~~~a~~~~~~~~   74 (486)
T TIGR01423         3 AFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNV--------GCVPKKLMVTGAQYMDTLRE   74 (486)
T ss_pred             ccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCc--------CCccHHHHHHHHHHHHHHHH
Confidence            58999999999999999999997 8999999974        5799999986        99999988766532 22221


Q ss_pred             cCCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh--CCCCcEEeCeEEEEEE---EcCCCceEEEEEeC
Q 013303           72 NLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF--GVDQVVRLHTEVLNAR---LVESNKWKVKSRKK  146 (446)
Q Consensus        72 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~--~l~~~i~~~~~V~~v~---~~~~~~~~v~~~~~  146 (446)
                       ...  +++.. ..          ...-.....+.++..+..++.  +....+.-...|+-+.   ... +..+|.+...
T Consensus        75 -~~~--~gi~~-~~----------~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~-~~~~v~V~~~  139 (486)
T TIGR01423        75 -SAG--FGWEF-DR----------SSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALE-DKNVVLVRES  139 (486)
T ss_pred             -hhc--cCeec-cC----------CccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEc-cCCEEEEeec
Confidence             111  11100 00          000112234444433333221  0000000001122111   111 3456666531


Q ss_pred             ---CC-ceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhcc---
Q 013303          147 ---DD-VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGF---  219 (446)
Q Consensus       147 ---~~-~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~---  219 (446)
                         .+ ..+++.||+||||||  +.|..|++||.+.    ...+.+..... ..+++|+|||+|.+|+|+|..++..   
T Consensus       140 ~~~~~~~~~~~~~d~lIIATG--s~p~~p~i~G~~~----~~~~~~~~~~~-~~~~~vvIIGgG~iG~E~A~~~~~l~~~  212 (486)
T TIGR01423       140 ADPKSAVKERLQAEHILLATG--SWPQMLGIPGIEH----CISSNEAFYLD-EPPRRVLTVGGGFISVEFAGIFNAYKPR  212 (486)
T ss_pred             cCCCCCcceEEECCEEEEecC--CCCCCCCCCChhh----eechhhhhccc-cCCCeEEEECCCHHHHHHHHHHHHhccC
Confidence               11 135799999999999  8999999999753    22222211111 2468999999999999999877654   


Q ss_pred             CCEEEEEEecCC-----cc-----ccccCCCCC-CeeeccceeEEccC--C--cEEecCCcEEeecEEEEecCccCCCCC
Q 013303          220 AKEVHIASRSVA-----DE-----THEKQPGYD-NMWLHSMVERANED--G--TVVFRNGRVVSADVIMHCTGYKYNYPF  284 (446)
Q Consensus       220 ~~~V~l~~r~~~-----~~-----~~~~~~~~~-~v~~~~~v~~i~~~--~--~v~~~dG~~~~~D~vi~atG~~~~~~~  284 (446)
                      |.+|+++.+.+.     +.     ..+.+.+.+ ++..+..++++..+  +  .+.+.+|+++++|.||+|+|++|+..+
T Consensus       213 G~~Vtli~~~~~il~~~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~  292 (486)
T TIGR01423       213 GGKVTLCYRNNMILRGFDSTLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQT  292 (486)
T ss_pred             CCeEEEEecCCccccccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCccc
Confidence            899999998764     11     112222222 56667778888642  2  266778889999999999999999886


Q ss_pred             CC---------CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCC
Q 013303          285 LE---------TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       285 l~---------~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~  343 (446)
                      +.         +.|.|.+|+.++          ++.|+||++|++.. ....+.+..||+.++.++.|.
T Consensus       293 l~l~~~gl~~~~~G~I~Vd~~l~----------Ts~~~IyA~GDv~~~~~l~~~A~~qG~~aa~ni~g~  351 (486)
T TIGR01423       293 LQLDKVGVELTKKGAIQVDEFSR----------TNVPNIYAIGDVTDRVMLTPVAINEGAAFVDTVFGN  351 (486)
T ss_pred             CCchhhCceECCCCCEecCCCCc----------CCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhCC
Confidence            52         345566666554          55899999999874 345678899999999999874

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=99.97  E-value=3.7e-31  Score=267.20  Aligned_cols=295  Identities=19%  Similarity=0.207  Sum_probs=195.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .+||+||||||+|++||+.|++.|.+|+|||+ +.+||+|.+.        ||.|++.+++....-....+.       .
T Consensus         3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~--------gc~psk~l~~~~~~~~~~~~~-------~   66 (460)
T PRK06292          3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNV--------GCIPSKALIAAAEAFHEAKHA-------E   66 (460)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Cccccceecc--------ceeeHHHHHHHHHHHHHHHHH-------H
Confidence            57999999999999999999999999999999 7899999875        888887665543221111111       1


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcE-E--e-CeEEEEEEE---cCCCceEEEEEeCCCceEEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV-R--L-HTEVLNARL---VESNKWKVKSRKKDDVVEEET  154 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i-~--~-~~~V~~v~~---~~~~~~~v~~~~~~~~~~~~~  154 (446)
                      .|.+..        .....+..++.+++.+.++++.-.  + .  + ...|.-+..   .- +.+++.+ ++    .++.
T Consensus        67 ~~gi~~--------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~g~~~~~-~~~~v~v-~~----~~~~  130 (460)
T PRK06292         67 EFGIHA--------DGPKIDFKKVMARVRRERDRFVGG--VVEGLEKKPKIDKIKGTARFV-DPNTVEV-NG----ERIE  130 (460)
T ss_pred             hcCCCc--------CCCccCHHHHHHHHHHHHHHHhcc--hHHHHHhhCCCEEEEEEEEEc-cCCEEEE-Cc----EEEE
Confidence            111110        112356678888888777755322  1 0  0 011111110   01 2345555 22    3799


Q ss_pred             EcEEEEccCCCCCCccCCCCCCCCCCc-cEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC--
Q 013303          155 FDAVVVCNGHFSVPRLAQVPGIDSWPG-KQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA--  231 (446)
Q Consensus       155 ~d~VVvAtG~~s~p~~p~i~G~~~~~g-~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~--  231 (446)
                      ||+||+|||  +.  .|.+||.....+ .++++.+... ....+++|+|||+|.+|+|+|..|++.|.+|+++.+.+.  
T Consensus       131 ~d~lIiATG--s~--~p~ipg~~~~~~~~~~~~~~~~~-~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l  205 (460)
T PRK06292        131 AKNIVIATG--SR--VPPIPGVWLILGDRLLTSDDAFE-LDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRIL  205 (460)
T ss_pred             eCEEEEeCC--CC--CCCCCCCcccCCCcEECchHHhC-ccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Confidence            999999999  55  556666643222 2333322211 123579999999999999999999999999999998764  


Q ss_pred             ---ccc----c-ccCCCCCCeeeccceeEEccCC--cEEe--cCC--cEEeecEEEEecCccCCCCCCC---------CC
Q 013303          232 ---DET----H-EKQPGYDNMWLHSMVERANEDG--TVVF--RNG--RVVSADVIMHCTGYKYNYPFLE---------TN  288 (446)
Q Consensus       232 ---~~~----~-~~~~~~~~v~~~~~v~~i~~~~--~v~~--~dG--~~~~~D~vi~atG~~~~~~~l~---------~~  288 (446)
                         +..    + +.+.+.-++..+..|.+++.++  .+.+  .+|  +++++|.||+|+|++|+.++|.         +.
T Consensus       206 ~~~d~~~~~~~~~~l~~~I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~  285 (460)
T PRK06292        206 PLEDPEVSKQAQKILSKEFKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDER  285 (460)
T ss_pred             cchhHHHHHHHHHHHhhccEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCC
Confidence               111    1 1122224455677888886543  2543  344  4688999999999999998632         34


Q ss_pred             CeeeeCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCC
Q 013303          289 GIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       289 g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~  343 (446)
                      |.+.+|++.+          ++.|+||++|++... ...+.+..||+.+|.++.+.
T Consensus       286 g~i~vd~~~~----------ts~~~IyA~GD~~~~~~~~~~A~~qg~~aa~~i~~~  331 (460)
T PRK06292        286 GRPVVDEHTQ----------TSVPGIYAAGDVNGKPPLLHEAADEGRIAAENAAGD  331 (460)
T ss_pred             CcEeECCCcc----------cCCCCEEEEEecCCCccchhHHHHHHHHHHHHhcCC
Confidence            5566666655          558999999998643 34577899999999999884

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.97  E-value=2.1e-30  Score=261.68  Aligned_cols=300  Identities=19%  Similarity=0.250  Sum_probs=190.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCC-ccCceeecCCCCCccc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF   80 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~-~y~~l~~~~~~~~~~~   80 (446)
                      ++||+||||||||++||..|++.|.+|+|+|+. .+||+|...        ||.|++.++... .+..+......  ++.
T Consensus         4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~~--------gciPsk~l~~~~~~~~~~~~~~~~--~gi   72 (466)
T PRK07818          4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNV--------GCIPSKALLRNAELAHIFTKEAKT--FGI   72 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecC--------CccccHHHHhhHHHHHHHHHHHHh--cCC
Confidence            469999999999999999999999999999984 799999875        899988666443 22222211111  111


Q ss_pred             CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh--CCCCcEEe-CeEEEEEEEcC--CCceEEEEEeCCCceEEEEE
Q 013303           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF--GVDQVVRL-HTEVLNARLVE--SNKWKVKSRKKDDVVEEETF  155 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~--~l~~~i~~-~~~V~~v~~~~--~~~~~v~~~~~~~~~~~~~~  155 (446)
                      ..              ........+..+..+..++.  ++.  ..+ ...|+.++...  -+..+|.+...++...++.|
T Consensus        73 ~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~  136 (466)
T PRK07818         73 SG--------------EVTFDYGAAFDRSRKVAEGRVKGVH--FLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTF  136 (466)
T ss_pred             Cc--------------CcccCHHHHHHHHHHHHHHHHHHHH--HHHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEc
Confidence            00              01112233333333332211  110  000 11233332110  02234444333333357999


Q ss_pred             cEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC----
Q 013303          156 DAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----  231 (446)
Q Consensus       156 d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~----  231 (446)
                      |+||||||  +.|+.|  ||.+. .+.++.+.+... ....+++|+|||+|.+|+|+|..|++.+.+|+++.+.+.    
T Consensus       137 d~lViATG--s~p~~~--pg~~~-~~~v~~~~~~~~-~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~  210 (466)
T PRK07818        137 DNAIIATG--SSTRLL--PGTSL-SENVVTYEEQIL-SRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN  210 (466)
T ss_pred             CEEEEeCC--CCCCCC--CCCCC-CCcEEchHHHhc-cccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc
Confidence            99999999  788764  56432 233444332211 123578999999999999999999999999999998764    


Q ss_pred             -cc-----ccccCCCC-CCeeeccceeEEccCCc---EEec--CCc--EEeecEEEEecCccCCCCCC--C-------CC
Q 013303          232 -DE-----THEKQPGY-DNMWLHSMVERANEDGT---VVFR--NGR--VVSADVIMHCTGYKYNYPFL--E-------TN  288 (446)
Q Consensus       232 -~~-----~~~~~~~~-~~v~~~~~v~~i~~~~~---v~~~--dG~--~~~~D~vi~atG~~~~~~~l--~-------~~  288 (446)
                       +.     ..+.+.+. -++..+..|.++..++.   +.+.  ||+  ++++|.||+|+|++|+..++  .       +.
T Consensus       211 ~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~  290 (466)
T PRK07818        211 EDAEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDR  290 (466)
T ss_pred             cCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCC
Confidence             11     11112222 25666778888875442   4454  674  68999999999999998863  2       33


Q ss_pred             CeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCCC
Q 013303          289 GIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGRI  344 (446)
Q Consensus       289 g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~~  344 (446)
                      |.+.+|++++          ++.|+||++|++.. ....+.+..||+.+|.++.|..
T Consensus       291 g~i~vd~~~~----------Ts~p~IyAiGD~~~~~~l~~~A~~~g~~aa~~i~g~~  337 (466)
T PRK07818        291 GAIAIDDYMR----------TNVPHIYAIGDVTAKLQLAHVAEAQGVVAAETIAGAE  337 (466)
T ss_pred             CcEeeCCCcc----------cCCCCEEEEeecCCCcccHhHHHHHHHHHHHHHcCCC
Confidence            4466665554          55899999998864 4456778999999999999853

>PRK13748 putative mercuric reductase; Provisional

Probab=99.97  E-value=1.8e-30  Score=268.52  Aligned_cols=296  Identities=19%  Similarity=0.247  Sum_probs=194.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .+||+||||||+|++||..|++.|.+|+|||+. .+||+|.+.        ||+|++.++.+........+.+.. .++.
T Consensus        98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~--------gciPsk~l~~~~~~~~~~~~~~~~-~g~~  167 (561)
T PRK13748         98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNV--------GCVPSKIMIRAAHIAHLRRESPFD-GGIA  167 (561)
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeecccc--------CccccHHHHHHHHHHHHHhccccc-CCcc
Confidence            379999999999999999999999999999996 899999975        899998766544322211111100 0110


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-------------CCCCcEEeCeEEEEEEEcCCCceEEEEEeCCC
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-------------GVDQVVRLHTEVLNARLVESNKWKVKSRKKDD  148 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-------------~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~  148 (446)
                         .  .        ..-...+.+.++..+...++             ++.  +. ..++..++.   ..+.|...++  
T Consensus       168 ---~--~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~-~g~~~~~~~---~~~~v~~~~g--  226 (561)
T PRK13748        168 ---A--T--------VPTIDRSRLLAQQQARVDELRHAKYEGILDGNPAIT--VL-HGEARFKDD---QTLIVRLNDG--  226 (561)
T ss_pred             ---C--C--------CCccCHHHHHHHHHHHHHHHhcccHHHHHhccCCeE--EE-EEEEEEecC---CEEEEEeCCC--
Confidence               0  0        00123445555544333221             222  22 223443321   3455554332  


Q ss_pred             ceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEe
Q 013303          149 VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR  228 (446)
Q Consensus       149 ~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r  228 (446)
                      ...++.||+||||||  +.|..|++||.+..  ..+++.+... ....+++|+|||+|.+|+|+|..|++.|.+|+++.+
T Consensus       227 ~~~~~~~d~lviAtG--s~p~~p~i~g~~~~--~~~~~~~~~~-~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~  301 (561)
T PRK13748        227 GERVVAFDRCLIATG--ASPAVPPIPGLKET--PYWTSTEALV-SDTIPERLAVIGSSVVALELAQAFARLGSKVTILAR  301 (561)
T ss_pred             ceEEEEcCEEEEcCC--CCCCCCCCCCCCcc--ceEccHHHhh-cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEec
Confidence            234799999999999  89999999998652  1222222111 123468999999999999999999999999999998


Q ss_pred             cCC----cccc-----ccCCCC-CCeeeccceeEEccCC-cEEe-cCCcEEeecEEEEecCccCCCCCC--C-------C
Q 013303          229 SVA----DETH-----EKQPGY-DNMWLHSMVERANEDG-TVVF-RNGRVVSADVIMHCTGYKYNYPFL--E-------T  287 (446)
Q Consensus       229 ~~~----~~~~-----~~~~~~-~~v~~~~~v~~i~~~~-~v~~-~dG~~~~~D~vi~atG~~~~~~~l--~-------~  287 (446)
                      ...    +..+     +.+.+. .++..+..|+++..++ .+.+ .++.++++|.||+|+|++|+..+|  .       +
T Consensus       302 ~~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~  381 (561)
T PRK13748        302 STLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHGELRADKLLVATGRAPNTRSLALDAAGVTVNA  381 (561)
T ss_pred             CccccccCHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCCeEEeCEEEEccCCCcCCCCcCchhcCceECC
Confidence            532    1111     112222 2556677888886433 2322 233469999999999999998864  2       3


Q ss_pred             CCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCC
Q 013303          288 NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       288 ~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~  343 (446)
                      .|.|.+|++++          ++.|+||++|++.. ....+.+..||+.++.++.|.
T Consensus       382 ~g~i~vd~~~~----------Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~  428 (561)
T PRK13748        382 QGAIVIDQGMR----------TSVPHIYAAGDCTDQPQFVYVAAAAGTRAAINMTGG  428 (561)
T ss_pred             CCCEeECCCcc----------cCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcCC
Confidence            34566666555          56899999999864 344577889999999999875

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.97  E-value=3.8e-30  Score=258.20  Aligned_cols=286  Identities=20%  Similarity=0.222  Sum_probs=193.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC-CcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCccc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE-QVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~-~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~   80 (446)
                      .+||+||||||||++||..|++.|++|+|||+.+ .+||+|...        ||.|++.+++....              
T Consensus         3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~--------gcip~k~l~~~~~~--------------   60 (441)
T PRK08010          3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINI--------GCIPTKTLVHDAQQ--------------   60 (441)
T ss_pred             cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeec--------cccchHHHHHHhcc--------------
Confidence            4799999999999999999999999999999976 489999865        78877654433210              


Q ss_pred             CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHH-----HHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEE
Q 013303           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQN-----FAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF  155 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~-----~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~  155 (446)
                       ...|..          .....+++.+++..     ..+..+++  +. ..++..++.   +.+.|...++   ..++.|
T Consensus        61 -~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~-~g~~~~i~~---~~~~v~~~~g---~~~~~~  120 (441)
T PRK08010         61 -HTDFVR----------AIQRKNEVVNFLRNKNFHNLADMPNID--VI-DGQAEFINN---HSLRVHRPEG---NLEIHG  120 (441)
T ss_pred             -CCCHHH----------HHHHHHHHHHHHHHhHHHHHhhcCCcE--EE-EEEEEEecC---CEEEEEeCCC---eEEEEe
Confidence             001100          00111333344432     11112333  32 234544432   4455554332   136899


Q ss_pred             cEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC----
Q 013303          156 DAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----  231 (446)
Q Consensus       156 d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~----  231 (446)
                      |+||+|||  +.|..|++||++.+.+ ++++......+ ..+++|+|||+|.+|+|+|..|++.+.+|+++.+++.    
T Consensus       121 d~lviATG--s~p~~p~i~G~~~~~~-v~~~~~~~~~~-~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~  196 (441)
T PRK08010        121 EKIFINTG--AQTVVPPIPGITTTPG-VYDSTGLLNLK-ELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR  196 (441)
T ss_pred             CEEEEcCC--CcCCCCCCCCccCCCC-EEChhHhhccc-ccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC
Confidence            99999999  8999999999875544 44444333322 3568999999999999999999999999999998764    


Q ss_pred             -ccc----c-ccCCCCC-CeeeccceeEEccCC-cEEec-CCcEEeecEEEEecCccCCCCCC---------CCCCeeee
Q 013303          232 -DET----H-EKQPGYD-NMWLHSMVERANEDG-TVVFR-NGRVVSADVIMHCTGYKYNYPFL---------ETNGIVTV  293 (446)
Q Consensus       232 -~~~----~-~~~~~~~-~v~~~~~v~~i~~~~-~v~~~-dG~~~~~D~vi~atG~~~~~~~l---------~~~g~i~~  293 (446)
                       +..    + +.+.+.+ ++..+..|.++..++ .+.+. ++.++++|.||+|+|.+|+..++         ++.|.|.+
T Consensus       197 ~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~v  276 (441)
T PRK08010        197 EDRDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHAQLAVDALLIASGRQPATASLHPENAGIAVNERGAIVV  276 (441)
T ss_pred             cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCCeEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEE
Confidence             111    1 1122222 455667888887543 34332 23458899999999999998764         23455666


Q ss_pred             CCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCC
Q 013303          294 DDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       294 ~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~  343 (446)
                      |++++          ++.|+||++|++... ...+.+..|++.++.++.|.
T Consensus       277 d~~~~----------Ts~~~IyA~GD~~~~~~~~~~a~~~~~~~~~~~~g~  317 (441)
T PRK08010        277 DKYLH----------TTADNIWAMGDVTGGLQFTYISLDDYRIVRDELLGE  317 (441)
T ss_pred             CCCcc----------cCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcCC
Confidence            66654          558999999998753 44577789999999999874

>PLN02546 glutathione reductase

Probab=99.97  E-value=1.4e-31  Score=271.99  Aligned_cols=292  Identities=20%  Similarity=0.234  Sum_probs=194.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEee---------CCCcCceeeeCCCCCCCCCCCCCCCCCccCCcc-Cceee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEK---------GEQVGGSWIYTSETESDPLGVDPNRYPVHSSLY-KSLRV   71 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~---------~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y-~~l~~   71 (446)
                      .+||+||||||+|+.||..+++.|.+|+|+|+         ...+||+|.+.        ||+|+|.++....+ ..+. 
T Consensus        79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~--------GCiPsK~l~~aa~~~~~~~-  149 (558)
T PLN02546         79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLR--------GCVPKKLLVYASKYSHEFE-  149 (558)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCc--------chHHHHHHHHHHHHHHHHH-
Confidence            37999999999999999999999999999996         25689999986        99999987765433 2111 


Q ss_pred             cCCCCCcccC---CCCCCcCCCCCCCCCCCCCC-----HHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEE
Q 013303           72 NLPRELMGFQ---AYPFVARNYEGSVDLRRYPG-----HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKS  143 (446)
Q Consensus        72 ~~~~~~~~~~---d~~~~~~~~~~~~~~~~~~~-----~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~  143 (446)
                      +.......+.   .+.|..           ...     ...+.+++....++.+++  +.. .+++.++.     .+|.+
T Consensus       150 ~~~~~g~~~~~~~~~d~~~-----------~~~~k~~~~~~l~~~~~~~l~~~gV~--~i~-G~a~~vd~-----~~V~v  210 (558)
T PLN02546        150 ESRGFGWKYETEPKHDWNT-----------LIANKNAELQRLTGIYKNILKNAGVT--LIE-GRGKIVDP-----HTVDV  210 (558)
T ss_pred             hhhhcCcccCCCCCCCHHH-----------HHHHHHHHHHHHHHHHHHHHHhCCcE--EEE-eEEEEccC-----CEEEE
Confidence            1111100000   111110           011     122334444445555554  332 24444432     34544


Q ss_pred             EeCCCceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEE
Q 013303          144 RKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEV  223 (446)
Q Consensus       144 ~~~~~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V  223 (446)
                       ++    .++.||+||||||  +.|..|++||.+.    ++++...... ...+++|+|||+|.+|+|+|..|+..+.+|
T Consensus       211 -~G----~~~~~D~LVIATG--s~p~~P~IpG~~~----v~~~~~~l~~-~~~~k~V~VIGgG~iGvE~A~~L~~~g~~V  278 (558)
T PLN02546        211 -DG----KLYTARNILIAVG--GRPFIPDIPGIEH----AIDSDAALDL-PSKPEKIAIVGGGYIALEFAGIFNGLKSDV  278 (558)
T ss_pred             -CC----EEEECCEEEEeCC--CCCCCCCCCChhh----ccCHHHHHhc-cccCCeEEEECCCHHHHHHHHHHHhcCCeE
Confidence             22    2689999999999  9999999999753    2233222211 235789999999999999999999999999


Q ss_pred             EEEEecCC-----cccc-----ccCCCCC-CeeeccceeEEcc--CCcEE--ecCCcEEeecEEEEecCccCCCCCC---
Q 013303          224 HIASRSVA-----DETH-----EKQPGYD-NMWLHSMVERANE--DGTVV--FRNGRVVSADVIMHCTGYKYNYPFL---  285 (446)
Q Consensus       224 ~l~~r~~~-----~~~~-----~~~~~~~-~v~~~~~v~~i~~--~~~v~--~~dG~~~~~D~vi~atG~~~~~~~l---  285 (446)
                      +++.+.+.     +..+     +.+.+.+ ++..+..+.++..  ++.+.  +.+++.+.+|.||+|+|++|+..+|   
T Consensus       279 tlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le  358 (558)
T PLN02546        279 HVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTKNLGLE  358 (558)
T ss_pred             EEEEeccccccccCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCCcCChh
Confidence            99998764     1111     1222222 4555677888853  23333  3445445589999999999998864   


Q ss_pred             ------CCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCC
Q 013303          286 ------ETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       286 ------~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~  343 (446)
                            ++.|.|.+|++++          ++.|+||++|++.. ....+.+..||+.+|+++.|.
T Consensus       359 ~~gl~~d~~G~I~VD~~l~----------Ts~p~IYAaGDv~~~~~l~~~A~~~g~~~a~~i~g~  413 (558)
T PLN02546        359 EVGVKMDKNGAIEVDEYSR----------TSVPSIWAVGDVTDRINLTPVALMEGGALAKTLFGN  413 (558)
T ss_pred             hcCCcCCCCCcEeECCCce----------eCCCCEEEeeccCCCcccHHHHHHHHHHHHHHHcCC
Confidence                  2345677776655          56999999999874 345578889999999999884

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=99.97  E-value=3.2e-30  Score=259.76  Aligned_cols=299  Identities=19%  Similarity=0.214  Sum_probs=196.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCC-ccCceeecCCCCCccc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF   80 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~-~y~~l~~~~~~~~~~~   80 (446)
                      |++|+|||||++|+.+|..+++.|.+|+|+|+. .+||+|.+.        ||+|+|.++... .+..++. ...  +++
T Consensus         1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c~~~--------gciPsK~l~~~a~~~~~~~~-~~~--~g~   68 (466)
T PRK07845          1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAAVLT--------DCVPSKTLIATAEVRTELRR-AAE--LGI   68 (466)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCccccc--------CCcchHHHHHHHHHHHHHHH-HHh--CCc
Confidence            579999999999999999999999999999986 599999876        899998766543 2221111 100  010


Q ss_pred             CCCCCCcCCCCCCCCCCCCCCHHHHH-----------HHHHHHHHHhCCCCcEEeCeEEEEEE--EcCCCceEEEEEeCC
Q 013303           81 QAYPFVARNYEGSVDLRRYPGHEEVL-----------RYLQNFAREFGVDQVVRLHTEVLNAR--LVESNKWKVKSRKKD  147 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~~~v~-----------~yl~~~~~~~~l~~~i~~~~~V~~v~--~~~~~~~~v~~~~~~  147 (446)
                      .   ....       .........+.           +.+.+.+++++++  +.. .++..++  ..+ ....|...+  
T Consensus        69 ~---~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~--~~~-g~~~~~~~~~~~-~~v~V~~~~--  132 (466)
T PRK07845         69 R---FIDD-------GEARVDLPAVNARVKALAAAQSADIRARLEREGVR--VIA-GRGRLIDPGLGP-HRVKVTTAD--  132 (466)
T ss_pred             c---cccC-------cccccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCE--EEE-EEEEEeecccCC-CEEEEEeCC--
Confidence            0   0000       00001122222           2334444555665  443 3454433  212 334444332  


Q ss_pred             CceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEE
Q 013303          148 DVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIAS  227 (446)
Q Consensus       148 ~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~  227 (446)
                      +...++.||+||+|||  +.|+.|++++.+.  ..++++....... ..+++|+|||+|.+|+|+|..|++.+++|+++.
T Consensus       133 g~~~~~~~d~lViATG--s~p~~~p~~~~~~--~~v~~~~~~~~~~-~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~  207 (466)
T PRK07845        133 GGEETLDADVVLIATG--ASPRILPTAEPDG--ERILTWRQLYDLD-ELPEHLIVVGSGVTGAEFASAYTELGVKVTLVS  207 (466)
T ss_pred             CceEEEecCEEEEcCC--CCCCCCCCCCCCC--ceEEeehhhhccc-ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEE
Confidence            3234689999999999  8888776554432  2344544443322 246899999999999999999999999999999


Q ss_pred             ecCC-----cc----cc-ccCCCCC-CeeeccceeEEccC-Cc--EEecCCcEEeecEEEEecCccCCCCCC--C-----
Q 013303          228 RSVA-----DE----TH-EKQPGYD-NMWLHSMVERANED-GT--VVFRNGRVVSADVIMHCTGYKYNYPFL--E-----  286 (446)
Q Consensus       228 r~~~-----~~----~~-~~~~~~~-~v~~~~~v~~i~~~-~~--v~~~dG~~~~~D~vi~atG~~~~~~~l--~-----  286 (446)
                      +.+.     +.    .+ +.+.+.+ ++.....|.++..+ +.  +.+.+|+++++|.||+|+|++|+...|  .     
T Consensus       208 ~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~  287 (466)
T PRK07845        208 SRDRVLPGEDADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVE  287 (466)
T ss_pred             cCCcCCCCCCHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCCCCCchhhCce
Confidence            8764     11    01 1122222 45566778888532 22  566789999999999999999998863  2     


Q ss_pred             --CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCC
Q 013303          287 --TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       287 --~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~  343 (446)
                        +.|.|.+|++.+          ++.|+||++|++... ...+.+..||+.++.++.|.
T Consensus       288 ~~~~G~i~Vd~~~~----------Ts~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~  337 (466)
T PRK07845        288 LTPSGHITVDRVSR----------TSVPGIYAAGDCTGVLPLASVAAMQGRIAMYHALGE  337 (466)
T ss_pred             ECCCCcEeECCCcc----------cCCCCEEEEeeccCCccchhHHHHHHHHHHHHHcCC
Confidence              334555665544          568999999988643 44678899999999999875

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.97  E-value=5e-30  Score=258.36  Aligned_cols=297  Identities=18%  Similarity=0.186  Sum_probs=187.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCc-cCceeecCCCCCccc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSL-YKSLRVNLPRELMGF   80 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~-y~~l~~~~~~~~~~~   80 (446)
                      .+||+||||||||++||..+++.|.+|+|+|+.+.+||+|.+.        ||+|++.++.... |+.++... ...++.
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~--------gciPsK~l~~~~~~~~~~~~~~-~~~~gi   73 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNV--------GCMPSKALLHASELYEAASGGE-FAHLGI   73 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccC--------cccccHHHHHHhHHHHHHhhhh-hhhcCc
Confidence            3699999999999999999999999999999877899999886        9999998766543 32221100 000111


Q ss_pred             CCCCCCcCCCCCCCCCCCCCCHHHHHHHH-----------HHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCc
Q 013303           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYL-----------QNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV  149 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl-----------~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~  149 (446)
                      .. .             .-....++.++.           ....+..++.  +..+. . .+.    +..++.+...+++
T Consensus        74 ~~-~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g~-a-~~~----~~~~v~v~~~~g~  131 (466)
T PRK06115         74 EV-K-------------PTLNLAQMMKQKDESVEALTKGVEFLFRKNKVD--WIKGW-G-RLD----GVGKVVVKAEDGS  131 (466)
T ss_pred             cc-c-------------CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEE-E-EEc----cCCEEEEEcCCCc
Confidence            00 0             001112222222           2222223333  22221 1 221    2233333322233


Q ss_pred             eEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303          150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS  229 (446)
Q Consensus       150 ~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~  229 (446)
                      ..++.||+||||||  +.|.  .+||.+.....++++...... ...+++|+|||+|.+|+|+|..+++.|.+|+++.+.
T Consensus       132 ~~~~~~d~lVIATG--s~p~--~ipg~~~~~~~~~~~~~~~~~-~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~  206 (466)
T PRK06115        132 ETQLEAKDIVIATG--SEPT--PLPGVTIDNQRIIDSTGALSL-PEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYL  206 (466)
T ss_pred             eEEEEeCEEEEeCC--CCCC--CCCCCCCCCCeEECHHHHhCC-ccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCC
Confidence            34799999999999  7774  366654211223444333222 124799999999999999999999999999999987


Q ss_pred             CC-----cc-----ccccCCCC-CCeeeccceeEEccCC-c--EEec---CC--cEEeecEEEEecCccCCCCCCC--CC
Q 013303          230 VA-----DE-----THEKQPGY-DNMWLHSMVERANEDG-T--VVFR---NG--RVVSADVIMHCTGYKYNYPFLE--TN  288 (446)
Q Consensus       230 ~~-----~~-----~~~~~~~~-~~v~~~~~v~~i~~~~-~--v~~~---dG--~~~~~D~vi~atG~~~~~~~l~--~~  288 (446)
                      +.     +.     ..+.+.+. -++..+..|.++..++ .  +.+.   +|  +++++|.||+|+|++|+...|.  ..
T Consensus       207 ~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~  286 (466)
T PRK06115        207 DRICPGTDTETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETV  286 (466)
T ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccc
Confidence            64     10     01112222 2566677888887532 2  3333   23  4689999999999999988653  21


Q ss_pred             C------eeeeCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCCC
Q 013303          289 G------IVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGRI  344 (446)
Q Consensus       289 g------~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~~  344 (446)
                      |      .+.+|++++          ++.|+||++|++... ...+.+..||+.+++++.|..
T Consensus       287 g~~~~~~G~~vd~~~~----------Ts~~~IyA~GD~~~~~~la~~A~~~g~~aa~~i~~~~  339 (466)
T PRK06115        287 GLETDKRGMLANDHHR----------TSVPGVWVIGDVTSGPMLAHKAEDEAVACIERIAGKA  339 (466)
T ss_pred             cceeCCCCEEECCCee----------cCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCC
Confidence            1      133343333          558999999998743 345778899999999998863

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=99.97  E-value=8.1e-31  Score=264.28  Aligned_cols=295  Identities=17%  Similarity=0.221  Sum_probs=191.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeC-----C---CcCceeeeCCCCCCCCCCCCCCCCCccCCcc-Cceeec
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG-----E---QVGGSWIYTSETESDPLGVDPNRYPVHSSLY-KSLRVN   72 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~-----~---~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y-~~l~~~   72 (446)
                      .+||+||||||+|+.+|..+++.|.+|+|+|+.     .   .+||+|.+.        ||+|+|.++++... ..++ +
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~--------GCiPsK~l~~~a~~~~~~~-~   72 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNV--------GCIPKKLMHQAALLGQALK-D   72 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceecccccccc--------CcCchhHHHHHHHHHHHHh-h
Confidence            479999999999999999999999999999973     1   589999886        99999987765432 2111 1


Q ss_pred             CCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHH-----------hCCCCcEEeCeEEEEEEEcCCCceEE
Q 013303           73 LPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-----------FGVDQVVRLHTEVLNARLVESNKWKV  141 (446)
Q Consensus        73 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~-----------~~l~~~i~~~~~V~~v~~~~~~~~~v  141 (446)
                      ..  .+++.   +..         ..-.....+.++..+.+++           .+++  +. ..+..-+     +..+|
T Consensus        73 ~~--~~g~~---~~~---------~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~--~i-~G~a~f~-----~~~~v  130 (484)
T TIGR01438        73 SR--NYGWN---VEE---------TVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVN--YE-NAYAEFV-----DKHRI  130 (484)
T ss_pred             hh--hcCcc---cCC---------CcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcE--EE-EEEEEEc-----CCCEE
Confidence            11  11110   000         0011233334433333332           2332  11 1122212     22345


Q ss_pred             EEEeCCCceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCC
Q 013303          142 KSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAK  221 (446)
Q Consensus       142 ~~~~~~~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~  221 (446)
                      .+...++...++.||+||||||  +.|+.|++||.+..   .+++.+..... ..+++++|||+|.+|+|+|..|++.|.
T Consensus       131 ~v~~~~g~~~~~~~d~lVIATG--s~p~~p~ipG~~~~---~~~~~~~~~~~-~~~~~vvIIGgG~iG~E~A~~l~~~G~  204 (484)
T TIGR01438       131 KATNKKGKEKIYSAERFLIATG--ERPRYPGIPGAKEL---CITSDDLFSLP-YCPGKTLVVGASYVALECAGFLAGIGL  204 (484)
T ss_pred             EEeccCCCceEEEeCEEEEecC--CCCCCCCCCCccce---eecHHHhhccc-ccCCCEEEECCCHHHHHHHHHHHHhCC
Confidence            5543333335799999999999  89999999997542   23333332221 245789999999999999999999999


Q ss_pred             EEEEEEecCC----ccc-----cccCCCCC-CeeeccceeEEccC-Cc--EEecCCc---EEeecEEEEecCccCCCCCC
Q 013303          222 EVHIASRSVA----DET-----HEKQPGYD-NMWLHSMVERANED-GT--VVFRNGR---VVSADVIMHCTGYKYNYPFL  285 (446)
Q Consensus       222 ~V~l~~r~~~----~~~-----~~~~~~~~-~v~~~~~v~~i~~~-~~--v~~~dG~---~~~~D~vi~atG~~~~~~~l  285 (446)
                      +|+++.+...    +..     .+.+.+.+ ++..+..+.++... +.  +.+.+|+   ++++|.||+|+|++|+..+|
T Consensus       205 ~Vtli~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l  284 (484)
T TIGR01438       205 DVTVMVRSILLRGFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRKL  284 (484)
T ss_pred             cEEEEEecccccccCHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCCcC
Confidence            9999997532    111     11222222 45555666666532 22  5666763   68999999999999999875


Q ss_pred             C--C--------CCeeeeCCCCcccccccccCCCCCCCeEEecCCCc--cCchhHHHHHHHHHHHHHcCC
Q 013303          286 E--T--------NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK--VIPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       286 ~--~--------~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~--~~~~~~~~~qa~~~a~~l~g~  343 (446)
                      .  .        .|.|.+|+.++          ++.|+||++|++..  ....+.+..||+.+++++.+.
T Consensus       285 ~l~~~gv~~~~~~G~I~Vd~~~~----------Ts~p~IyA~GDv~~~~~~l~~~A~~~g~~aa~~i~~~  344 (484)
T TIGR01438       285 NLENVGVKINKKTGKIPADEEEQ----------TNVPYIYAVGDILEDKQELTPVAIQAGRLLAQRLFSG  344 (484)
T ss_pred             CcccccceecCcCCeEecCCCcc----------cCCCCEEEEEEecCCCccchHHHHHHHHHHHHHHhcC
Confidence            3  2        24455555443          55899999999763  334577889999999999863

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.97  E-value=3.9e-30  Score=257.91  Aligned_cols=286  Identities=19%  Similarity=0.202  Sum_probs=190.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCC-cCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCccc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ-VGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~-~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~   80 (446)
                      .+||+||||||||++||..|++.|.+|+|||+.+. +||+|...        ||.|++.++.....              
T Consensus         3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~--------gciP~k~~~~~~~~--------------   60 (438)
T PRK07251          3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINI--------GCIPTKTLLVAAEK--------------   60 (438)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecC--------ccccchHhhhhhhc--------------
Confidence            47999999999999999999999999999999864 69998764        78887665543321              


Q ss_pred             CCCCCCcCCCCCCCCCCCCCCHHH----HHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEc
Q 013303           81 QAYPFVARNYEGSVDLRRYPGHEE----VLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD  156 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~~~----v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d  156 (446)
                       ...|...          .-..+.    +.+...+...+.+++  +..+ ++..+     +..+|.+..+. ...++.||
T Consensus        61 -~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~gV~--~~~g-~~~~~-----~~~~v~v~~~~-~~~~~~~d  120 (438)
T PRK07251         61 -NLSFEQV----------MATKNTVTSRLRGKNYAMLAGSGVD--LYDA-EAHFV-----SNKVIEVQAGD-EKIELTAE  120 (438)
T ss_pred             -CCCHHHH----------HHHHHHHHHHHHHHHHHHHHhCCCE--EEEE-EEEEc-----cCCEEEEeeCC-CcEEEEcC
Confidence             0011000          000011    112222333444544  3332 22222     23455554422 22468999


Q ss_pred             EEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC-----
Q 013303          157 AVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-----  231 (446)
Q Consensus       157 ~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~-----  231 (446)
                      +||||||  +.|+.|++||.+... .++++....... ..+++|+|||+|.+|+|+|..+++.+.+|+++.+.+.     
T Consensus       121 ~vViATG--s~~~~p~i~G~~~~~-~v~~~~~~~~~~-~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~  196 (438)
T PRK07251        121 TIVINTG--AVSNVLPIPGLADSK-HVYDSTGIQSLE-TLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPRE  196 (438)
T ss_pred             EEEEeCC--CCCCCCCCCCcCCCC-cEEchHHHhcch-hcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCC
Confidence            9999999  889999999975432 244443333222 2468999999999999999999999999999998763     


Q ss_pred             cccc-----ccCCCC-CCeeeccceeEEccCC-cE-EecCCcEEeecEEEEecCccCCCCCCC---------CCCeeeeC
Q 013303          232 DETH-----EKQPGY-DNMWLHSMVERANEDG-TV-VFRNGRVVSADVIMHCTGYKYNYPFLE---------TNGIVTVD  294 (446)
Q Consensus       232 ~~~~-----~~~~~~-~~v~~~~~v~~i~~~~-~v-~~~dG~~~~~D~vi~atG~~~~~~~l~---------~~g~i~~~  294 (446)
                      +..+     +.+.+. -++.....|.++..++ .+ ...+|+++++|.||+|+|+.|+.+.+.         +.|.+.+|
T Consensus       197 ~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd  276 (438)
T PRK07251        197 EPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVD  276 (438)
T ss_pred             CHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEEC
Confidence            1111     111122 2455566788886543 23 345678899999999999999987643         23445555


Q ss_pred             CCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCC
Q 013303          295 DNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       295 ~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~  343 (446)
                      +..+          ++.|+||++|++... ...+.+..|++.++.++.|.
T Consensus       277 ~~~~----------t~~~~IyaiGD~~~~~~~~~~a~~~~~~~~~~~~~~  316 (438)
T PRK07251        277 DYCQ----------TSVPGVFAVGDVNGGPQFTYISLDDFRIVFGYLTGD  316 (438)
T ss_pred             CCcc----------cCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcCC
Confidence            5544          458999999988643 34567788999999988865

>PTZ00052 thioredoxin reductase; Provisional

Probab=99.97  E-value=7.4e-31  Score=265.76  Aligned_cols=304  Identities=17%  Similarity=0.226  Sum_probs=197.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC--------CcCceeeeCCCCCCCCCCCCCCCCCccCCcc-Cceeec
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE--------QVGGSWIYTSETESDPLGVDPNRYPVHSSLY-KSLRVN   72 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~--------~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y-~~l~~~   72 (446)
                      ++||+||||||||++||..|++.|.+|+|+|+..        .+||+|.+.        ||.|++.++..... ..++..
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~--------gciPsK~l~~~a~~~~~~~~~   76 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNV--------GCVPKKLMHYAANIGSIFHHD   76 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccc--------cccchHHHHHHHHHHHHHHhH
Confidence            4799999999999999999999999999999631        489999875        89988754433211 111110


Q ss_pred             CCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEE------cCCCceEEEEEeC
Q 013303           73 LPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARL------VESNKWKVKSRKK  146 (446)
Q Consensus        73 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~------~~~~~~~v~~~~~  146 (446)
                      .  ..+++.     .         ..-.+..++.+++...++.++..  +....++..|+.      .. +.++|.+.+.
T Consensus        77 ~--~~~g~~-----~---------~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~v~~i~g~a~~~-~~~~v~v~~~  137 (499)
T PTZ00052         77 S--QMYGWK-----T---------SSSFNWGKLVTTVQNHIRSLNFS--YRTGLRSSKVEYINGLAKLK-DEHTVSYGDN  137 (499)
T ss_pred             H--hcCCCC-----C---------CCCcCHHHHHHHHHHHHHHhhHH--HHHHhhhcCcEEEEEEEEEc-cCCEEEEeeC
Confidence            0  011111     0         00234578888888877766433  222222222111      11 3466666542


Q ss_pred             CCceEEEEEcEEEEccCCCCCCccCC-CCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEE
Q 013303          147 DDVVEEETFDAVVVCNGHFSVPRLAQ-VPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHI  225 (446)
Q Consensus       147 ~~~~~~~~~d~VVvAtG~~s~p~~p~-i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l  225 (446)
                       +....+.||+||||||  +.|+.|. +||.+.+   .+.+.+..... ..+++|+|||+|.+|+|+|..|++.|.+|++
T Consensus       138 -~~~~~i~~d~lIIATG--s~p~~p~~i~G~~~~---~~~~~~~~~~~-~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtl  210 (499)
T PTZ00052        138 -SQEETITAKYILIATG--GRPSIPEDVPGAKEY---SITSDDIFSLS-KDPGKTLIVGASYIGLETAGFLNELGFDVTV  210 (499)
T ss_pred             -CCceEEECCEEEEecC--CCCCCCCCCCCccce---eecHHHHhhhh-cCCCeEEEECCCHHHHHHHHHHHHcCCcEEE
Confidence             2234799999999999  8999884 8987542   22332222211 1357999999999999999999999999999


Q ss_pred             EEecCC----cc----c-cccCCCCC-CeeeccceeEEccC-C--cEEecCCcEEeecEEEEecCccCCCCCCC--CCCe
Q 013303          226 ASRSVA----DE----T-HEKQPGYD-NMWLHSMVERANED-G--TVVFRNGRVVSADVIMHCTGYKYNYPFLE--TNGI  290 (446)
Q Consensus       226 ~~r~~~----~~----~-~~~~~~~~-~v~~~~~v~~i~~~-~--~v~~~dG~~~~~D~vi~atG~~~~~~~l~--~~g~  290 (446)
                      +.++..    +.    . .+.+.+.+ ++..+..+.++... +  .+.+.+|+++++|.||+|+|++|+..+|.  ..| 
T Consensus       211 i~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g-  289 (499)
T PTZ00052        211 AVRSIPLRGFDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIG-  289 (499)
T ss_pred             EEcCcccccCCHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCccccCchhcC-
Confidence            987432    10    1 11122222 45555666666532 2  26678899999999999999999999874  222 


Q ss_pred             eeeCCCCcccccccccCCCCCCCeEEecCCCc--cCchhHHHHHHHHHHHHHcCC
Q 013303          291 VTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK--VIPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       291 i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~--~~~~~~~~~qa~~~a~~l~g~  343 (446)
                      +.++++......+.  . ++.|+||++|++..  ....+.+..||+.+|.++.|.
T Consensus       290 ~~~~~~G~ii~~~~--~-Ts~p~IyAiGDv~~~~~~l~~~A~~~g~~aa~ni~g~  341 (499)
T PTZ00052        290 VHVNKSNKIIAPND--C-TNIPNIFAVGDVVEGRPELTPVAIKAGILLARRLFKQ  341 (499)
T ss_pred             cEECCCCCEeeCCC--c-CCCCCEEEEEEecCCCcccHHHHHHHHHHHHHHHhCC
Confidence            44444332111111  2 55899999999753  335577889999999999874

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=99.97  E-value=5e-30  Score=259.33  Aligned_cols=302  Identities=18%  Similarity=0.203  Sum_probs=194.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCC-ccCceeecCCCCCccc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF   80 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~-~y~~l~~~~~~~~~~~   80 (446)
                      .+||+||||||||++||..|++.|++|+|+|+. .+||+|...        ||+|++.+++.. .+..++. .+...+..
T Consensus         4 ~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~--------gciPsk~l~~~a~~~~~~~~-~~~~g~~~   73 (472)
T PRK05976          4 EYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHK--------GCIPSKALLHSAEVFQTAKK-ASPFGISV   73 (472)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcC--------CcCchHHHHHHHHHHHHHHH-HHhcCccC
Confidence            579999999999999999999999999999995 799999975        899998766543 2332221 11100000


Q ss_pred             CC--CCCCcCCCCCCCCCCCCCCHHHHHHHHH----HHHHHhCCCCcEEeCeEEEEEEEc----CCCceEEEEEeCCCce
Q 013303           81 QA--YPFVARNYEGSVDLRRYPGHEEVLRYLQ----NFAREFGVDQVVRLHTEVLNARLV----ESNKWKVKSRKKDDVV  150 (446)
Q Consensus        81 ~d--~~~~~~~~~~~~~~~~~~~~~~v~~yl~----~~~~~~~l~~~i~~~~~V~~v~~~----~~~~~~v~~~~~~~~~  150 (446)
                      ..  ..|..          ..-..+++.+++.    ...++.+++  +.. .++..++..    .++.++|...++  ..
T Consensus        74 ~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~~~~~gv~--~~~-g~a~~i~~~~~~~~~~~~~v~~~~g--~~  138 (472)
T PRK05976         74 SGPALDFAK----------VQERKDGIVDRLTKGVAALLKKGKID--VFH-GIGRILGPSIFSPMPGTVSVETETG--EN  138 (472)
T ss_pred             CCCccCHHH----------HHHHHHHHHHHHHHHHHHHHHhCCCE--EEE-EEEEEeCCCCCcCCceEEEEEeCCC--ce
Confidence            00  00000          0001122333332    333444655  443 456666543    002455554333  23


Q ss_pred             EEEEEcEEEEccCCCCCCccCCCCCCCCCCcc-EEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303          151 EEETFDAVVVCNGHFSVPRLAQVPGIDSWPGK-QMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS  229 (446)
Q Consensus       151 ~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~-~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~  229 (446)
                      .++.||+||||||  +.|+.|  ||.. +.+. ++++.+..... ..+++|+|||+|++|+|+|..|++.+.+|+++.+.
T Consensus       139 ~~~~~d~lViATG--s~p~~~--p~~~-~~~~~~~~~~~~~~~~-~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~  212 (472)
T PRK05976        139 EMIIPENLLIATG--SRPVEL--PGLP-FDGEYVISSDEALSLE-TLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAA  212 (472)
T ss_pred             EEEEcCEEEEeCC--CCCCCC--CCCC-CCCceEEcchHhhCcc-ccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEec
Confidence            4799999999999  777654  3332 1222 44443333222 23689999999999999999999999999999987


Q ss_pred             CC-----c----ccc-ccCCCCC-CeeeccceeEEcc--CCcE---EecCCc--EEeecEEEEecCccCCCCCCC-----
Q 013303          230 VA-----D----ETH-EKQPGYD-NMWLHSMVERANE--DGTV---VFRNGR--VVSADVIMHCTGYKYNYPFLE-----  286 (446)
Q Consensus       230 ~~-----~----~~~-~~~~~~~-~v~~~~~v~~i~~--~~~v---~~~dG~--~~~~D~vi~atG~~~~~~~l~-----  286 (446)
                      +.     +    ..+ +.+.+.+ ++.....|.++..  ++.+   .+.+|+  ++++|.||+|+|.+|+.+.+.     
T Consensus       213 ~~il~~~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~  292 (472)
T PRK05976        213 DRILPTEDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTD  292 (472)
T ss_pred             CccCCcCCHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcC
Confidence            64     1    111 1222222 5666777888863  3332   345774  588999999999999988653     


Q ss_pred             ---CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCCC
Q 013303          287 ---TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGRI  344 (446)
Q Consensus       287 ---~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~~  344 (446)
                         +.|.+.+|+..+          ++.|+||++|++... .....+..||+.++.++.|..
T Consensus       293 ~~~~~g~i~Vd~~l~----------ts~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~~  344 (472)
T PRK05976        293 IDVEGGFIQIDDFCQ----------TKERHIYAIGDVIGEPQLAHVAMAEGEMAAEHIAGKK  344 (472)
T ss_pred             ceecCCEEEECCCcc----------cCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCC
Confidence               234566665554          448999999988643 346778899999999998863

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=99.97  E-value=1.1e-29  Score=256.61  Aligned_cols=299  Identities=18%  Similarity=0.223  Sum_probs=193.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEee------CCCcCceeeeCCCCCCCCCCCCCCCCCccCCc-cCceeecCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEK------GEQVGGSWIYTSETESDPLGVDPNRYPVHSSL-YKSLRVNLP   74 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~------~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~-y~~l~~~~~   74 (446)
                      .+||+||||||||++||..+++.|.+|+|+|+      ...+||+|.+.        ||.|++.+++... +..+.....
T Consensus         4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~--------gc~P~k~l~~~a~~~~~~~~~~~   75 (475)
T PRK06327          4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNV--------GCIPSKALLASSEEFENAGHHFA   75 (475)
T ss_pred             ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccc--------cccHHHHHHHHHHHHHHHHhhHH
Confidence            47999999999999999999999999999998      36789999765        7888765544321 111111000


Q ss_pred             CCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHH-----------HHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEE
Q 013303           75 RELMGFQAYPFVARNYEGSVDLRRYPGHEEVLR-----------YLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKS  143 (446)
Q Consensus        75 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~-----------yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~  143 (446)
                      .....+...+               ....++.+           .+....+..+++  +. ..++..+++.. +.++|.+
T Consensus        76 ~~G~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~-~g~~~~~~~~~-~~~~v~v  136 (475)
T PRK06327         76 DHGIHVDGVK---------------IDVAKMIARKDKVVKKMTGGIEGLFKKNKIT--VL-KGRGSFVGKTD-AGYEIKV  136 (475)
T ss_pred             hcCccCCCCc---------------cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EE-EEEEEEecCCC-CCCEEEE
Confidence            0000000000               11122222           233334444554  33 34555665444 5688887


Q ss_pred             EeCCCceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEE
Q 013303          144 RKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEV  223 (446)
Q Consensus       144 ~~~~~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V  223 (446)
                      ....+  .++.||+||||||  +.|+.|+  +.. +.+..++..+........+++|+|||+|.+|+|+|..+++.+.+|
T Consensus       137 ~~~~~--~~~~~d~lViATG--s~p~~~p--~~~-~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~V  209 (475)
T PRK06327        137 TGEDE--TVITAKHVIIATG--SEPRHLP--GVP-FDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEV  209 (475)
T ss_pred             ecCCC--eEEEeCEEEEeCC--CCCCCCC--CCC-CCCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeE
Confidence            64322  3799999999999  7776543  222 223333333221111235799999999999999999999999999


Q ss_pred             EEEEecCC-----ccc-----cccCCCCC-CeeeccceeEEccCCc---EEecCC----cEEeecEEEEecCccCCCCCC
Q 013303          224 HIASRSVA-----DET-----HEKQPGYD-NMWLHSMVERANEDGT---VVFRNG----RVVSADVIMHCTGYKYNYPFL  285 (446)
Q Consensus       224 ~l~~r~~~-----~~~-----~~~~~~~~-~v~~~~~v~~i~~~~~---v~~~dG----~~~~~D~vi~atG~~~~~~~l  285 (446)
                      +++.+.+.     +..     .+.+.+.+ ++..+..|.++..++.   +.+.++    +++++|.||+|+|++|+.++|
T Consensus       210 tli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l  289 (475)
T PRK06327        210 TILEALPAFLAAADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGL  289 (475)
T ss_pred             EEEeCCCccCCcCCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCCC
Confidence            99998764     111     12222222 5666778888875432   455553    468899999999999998854


Q ss_pred             C---------CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCCC
Q 013303          286 E---------TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGRI  344 (446)
Q Consensus       286 ~---------~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~~  344 (446)
                      .         +.|.+.+|+..+          ++.|+||++|++.. ....+.+..|++.+|.++.|..
T Consensus       290 ~~~~~g~~~~~~G~i~vd~~~~----------Ts~~~VyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~~  348 (475)
T PRK06327        290 GLEAVGLKLDERGFIPVDDHCR----------TNVPNVYAIGDVVRGPMLAHKAEEEGVAVAERIAGQK  348 (475)
T ss_pred             CcHhhCceeCCCCeEeECCCCc----------cCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHcCCC
Confidence            2         334566665544          45899999998864 3445778899999999999853

>TIGR03452 mycothione_red mycothione reductase

Probab=99.97  E-value=9.6e-30  Score=255.15  Aligned_cols=288  Identities=17%  Similarity=0.209  Sum_probs=189.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCcc-CceeecCCCCCccc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLY-KSLRVNLPRELMGF   80 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y-~~l~~~~~~~~~~~   80 (446)
                      .+||+||||||+|..||..  ..|.+|+|+|+ +.+||+|.+.        ||+|+|.++.+... +.++ +...  +++
T Consensus         2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC~n~--------GCiPsK~l~~~a~~~~~~~-~~~~--~g~   67 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTCLNV--------GCIPTKMFVYAAEVAQSIG-ESAR--LGI   67 (452)
T ss_pred             CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCeeecc--------CccchHHHHHHHHHHHHHH-Hhhc--cCe
Confidence            5899999999999998654  47999999998 5799999986        99999987755432 2221 1111  111


Q ss_pred             CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHH-HHHH--------------hCCCCcEEeCeEEEEEEEcCCCceEEEEEe
Q 013303           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQN-FARE--------------FGVDQVVRLHTEVLNARLVESNKWKVKSRK  145 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~-~~~~--------------~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~  145 (446)
                      ..             ...-+...++.++... ..+.              .+++  +..++.+..      +.++|.+.+
T Consensus        68 ~~-------------~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g~~~~~------~~~~V~~~~  126 (452)
T TIGR03452        68 DA-------------EIDSVRWPDIVSRVFGDRIDPIAAGGEDYRRGDETPNID--VYDGHARFV------GPRTLRTGD  126 (452)
T ss_pred             eC-------------CCCccCHHHHHHHhhhhHhHHHhccchHhhhhcccCCeE--EEEEEEEEe------cCCEEEECC
Confidence            00             0001223444444433 2221              1222  222222111      457777754


Q ss_pred             CCCceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEE
Q 013303          146 KDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHI  225 (446)
Q Consensus       146 ~~~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l  225 (446)
                      +.    +++||+||||||  +.|..|++.+...  -....+.+..... ..+++|+|||+|++|+|+|..|++.|.+|++
T Consensus       127 g~----~~~~d~lIiATG--s~p~~p~~~~~~~--~~~~~~~~~~~l~-~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtl  197 (452)
T TIGR03452       127 GE----EITGDQIVIAAG--SRPYIPPAIADSG--VRYHTNEDIMRLP-ELPESLVIVGGGYIAAEFAHVFSALGTRVTI  197 (452)
T ss_pred             Cc----EEEeCEEEEEEC--CCCCCCCCCCCCC--CEEEcHHHHHhhh-hcCCcEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence            32    689999999999  8898887544221  1122222221111 1368999999999999999999999999999


Q ss_pred             EEecCC-----cc----ccccCCC-CCCeeeccceeEEccCC-c--EEecCCcEEeecEEEEecCccCCCCCCC------
Q 013303          226 ASRSVA-----DE----THEKQPG-YDNMWLHSMVERANEDG-T--VVFRNGRVVSADVIMHCTGYKYNYPFLE------  286 (446)
Q Consensus       226 ~~r~~~-----~~----~~~~~~~-~~~v~~~~~v~~i~~~~-~--v~~~dG~~~~~D~vi~atG~~~~~~~l~------  286 (446)
                      +.+.+.     +.    .+.++.+ .-++.....|.++..++ .  +.+.+|+++++|.||+|+|++|+..+|.      
T Consensus       198 i~~~~~ll~~~d~~~~~~l~~~~~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl  277 (452)
T TIGR03452       198 VNRSTKLLRHLDEDISDRFTEIAKKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGV  277 (452)
T ss_pred             EEccCccccccCHHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCe
Confidence            998764     11    1111112 22455667788886432 2  5567888899999999999999998853      


Q ss_pred             ---CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCC
Q 013303          287 ---TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       287 ---~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~  343 (446)
                         +.|.+.+|++++          ++.|+||++|++... ...+.+..||+.+|+++.|.
T Consensus       278 ~~~~~G~i~vd~~~~----------Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~  328 (452)
T TIGR03452       278 EVDEDGRIKVDEYGR----------TSARGVWALGDVSSPYQLKHVANAEARVVKHNLLHP  328 (452)
T ss_pred             eECCCCcEeeCCCcc----------cCCCCEEEeecccCcccChhHHHHHHHHHHHHhcCC
Confidence               234455555544          568999999998754 44577899999999999875

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=99.97  E-value=2.3e-29  Score=251.72  Aligned_cols=272  Identities=17%  Similarity=0.233  Sum_probs=185.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG   79 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~   79 (446)
                      |++|+|||||+||+.||..|++.  +.+|+|+|+++.++    +.+.                  .              
T Consensus         1 m~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~----~~~~------------------~--------------   44 (438)
T PRK13512          1 MPKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS----FANC------------------A--------------   44 (438)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc----cccC------------------C--------------
Confidence            46899999999999999999886  57999999987543    1100                  0              


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCCHHHHHHH-HHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCC-CceEEEEEcE
Q 013303           80 FQAYPFVARNYEGSVDLRRYPGHEEVLRY-LQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDA  157 (446)
Q Consensus        80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~y-l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~-~~~~~~~~d~  157 (446)
                         .|+..        ........+...+ ...+.++.++.  ++++++|++|++..   .+|.+.++. ++..++.||+
T Consensus        45 ---lp~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~--v~~~~~V~~Id~~~---~~v~~~~~~~~~~~~~~yd~  108 (438)
T PRK13512         45 ---LPYYI--------GEVVEDRKYALAYTPEKFYDRKQIT--VKTYHEVIAINDER---QTVTVLNRKTNEQFEESYDK  108 (438)
T ss_pred             ---cchhh--------cCccCCHHHcccCCHHHHHHhCCCE--EEeCCEEEEEECCC---CEEEEEECCCCcEEeeecCE
Confidence               00000        0000111222222 23445666777  88899999998765   456665543 2344678999


Q ss_pred             EEEccCCCCCCccCCCCCCCCCCccEEEeeecCCC-------CCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          158 VVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP-------NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       158 VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~-------~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      ||||||  +.|+.|++++..     ++......+.       ....+++|+|||+|.+|+|+|..|++.+.+|+++++++
T Consensus       109 lviAtG--s~~~~~~~~~~~-----~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~  181 (438)
T PRK13512        109 LILSPG--ASANSLGFESDI-----TFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSD  181 (438)
T ss_pred             EEECCC--CCCCCCCCCCCC-----eEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence            999999  888887765321     2222211111       12246899999999999999999999999999999876


Q ss_pred             C-----cc----c-cccCCCCC-CeeeccceeEEccCCcEEecCCcEEeecEEEEecCccCCCCCCCC-------CCeee
Q 013303          231 A-----DE----T-HEKQPGYD-NMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLET-------NGIVT  292 (446)
Q Consensus       231 ~-----~~----~-~~~~~~~~-~v~~~~~v~~i~~~~~v~~~dG~~~~~D~vi~atG~~~~~~~l~~-------~g~i~  292 (446)
                      .     +.    . .+.+.+.+ ++..+..|+++++. .+++++|+++++|.|++|+|++|+.+++..       .|.+.
T Consensus       182 ~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~-~v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~  260 (438)
T PRK13512        182 KINKLMDADMNQPILDELDKREIPYRLNEEIDAINGN-EVTFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIP  260 (438)
T ss_pred             ccchhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeCC-EEEECCCCEEEeCEEEECcCCCcChHHHHhcCcccCCCCcEE
Confidence            4     11    1 11222222 45667788998653 588899999999999999999999887643       34455


Q ss_pred             eCCCCcccccccccCCCCCCCeEEecCCCcc-----------CchhHHHHHHHHHHHHHcCC
Q 013303          293 VDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-----------IPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       293 ~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-----------~~~~~~~~qa~~~a~~l~g~  343 (446)
                      +|++++          ++.|+||++|++...           ...+.+..||+.+++++.|.
T Consensus       261 Vd~~~~----------t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~g~  312 (438)
T PRK13512        261 VNDKFE----------TNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIAGN  312 (438)
T ss_pred             ECCCcc----------cCCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhcCC
Confidence            555443          458999999988531           22344678999999999985

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=99.97  E-value=2.7e-29  Score=253.81  Aligned_cols=293  Identities=18%  Similarity=0.220  Sum_probs=190.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCC-ccCceeecCCCCCccc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF   80 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~-~y~~l~~~~~~~~~~~   80 (446)
                      ++||+||||||||++||..|++.|.+|+|+|+ +.+||+|...        ||.|++.++... .+..+. ....     
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~--------gc~Psk~l~~~~~~~~~~~-~~~~-----   65 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNV--------GCIPTKALLHSAEVYDEIK-HAKD-----   65 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeec--------CccchHHHHHHhhHHHHHH-HHHh-----
Confidence            47999999999999999999999999999999 8899999875        888887655433 222222 1110     


Q ss_pred             CCCCCCcCCCCCCCCCCCCCCHHHHHHHHH-----------HHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCc
Q 013303           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQ-----------NFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV  149 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~-----------~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~  149 (446)
                        +.+..        .....+...+.++..           ...++.+++  +..+ ++..++  . ..+.+...++   
T Consensus        66 --~g~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g-~~~~~~--~-~~~~v~~~~g---  126 (461)
T TIGR01350        66 --YGIEV--------ENVSVDWEKMQKRKNKVVKKLVGGVKGLLKKNKVT--VIKG-EAKFLD--P-GTVLVTGENG---  126 (461)
T ss_pred             --cCCCC--------CCCcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEE-EEEEcc--C-CEEEEecCCC---
Confidence              10000        000112233333332           233334544  3332 333332  1 3344443322   


Q ss_pred             eEEEEEcEEEEccCCCCCCccCCCC-CCCCCCccEEEe-eecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEE
Q 013303          150 VEEETFDAVVVCNGHFSVPRLAQVP-GIDSWPGKQMHS-HNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIAS  227 (446)
Q Consensus       150 ~~~~~~d~VVvAtG~~s~p~~p~i~-G~~~~~g~~~hs-~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~  227 (446)
                      ..++.||+||+|||  +.|+.|++| +.+   +..+++ .+.... ...+++|+|||+|.+|+|+|..|++.+.+|+++.
T Consensus       127 ~~~~~~d~lVlAtG--~~p~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~  200 (461)
T TIGR01350       127 EETLTAKNIIIATG--SRPRSLPGPFDFD---GEVVITSTGALNL-KEVPESLVIIGGGVIGIEFASIFASLGSKVTVIE  200 (461)
T ss_pred             cEEEEeCEEEEcCC--CCCCCCCCCCCCC---CceEEcchHHhcc-ccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEE
Confidence            14789999999999  889888876 322   222332 222211 2246899999999999999999999999999999


Q ss_pred             ecCCc-----cc-----cccCCCC-CCeeeccceeEEccC-Cc--EEecCC--cEEeecEEEEecCccCCCC--CCC---
Q 013303          228 RSVAD-----ET-----HEKQPGY-DNMWLHSMVERANED-GT--VVFRNG--RVVSADVIMHCTGYKYNYP--FLE---  286 (446)
Q Consensus       228 r~~~~-----~~-----~~~~~~~-~~v~~~~~v~~i~~~-~~--v~~~dG--~~~~~D~vi~atG~~~~~~--~l~---  286 (446)
                      +.+..     ..     .+.+.+. .++.....|.++..+ +.  +.+.+|  +++++|.||+|+|+.|+.+  ++.   
T Consensus       201 ~~~~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~g  280 (461)
T TIGR01350       201 MLDRILPGEDAEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLG  280 (461)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhC
Confidence            87640     00     1112222 256667788888643 23  344567  4789999999999999988  333   


Q ss_pred             ----CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCCC
Q 013303          287 ----TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGRI  344 (446)
Q Consensus       287 ----~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~~  344 (446)
                          ..|.+.+|+..+          ++.|+||++|++.. ....+.+..||+.+|.++.++.
T Consensus       281 l~~~~~g~i~vd~~l~----------t~~~~IyaiGD~~~~~~~~~~A~~~g~~aa~~i~~~~  333 (461)
T TIGR01350       281 VELDERGRIVVDEYMR----------TNVPGIYAIGDVIGGPMLAHVASHEGIVAAENIAGKE  333 (461)
T ss_pred             ceECCCCcEeeCCCcc----------cCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCC
Confidence                334566665544          45899999998864 3345778899999999998753

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=99.97  E-value=4.7e-29  Score=245.35  Aligned_cols=270  Identities=18%  Similarity=0.256  Sum_probs=187.8

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCC--CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCc
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM   78 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g--~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~   78 (446)
                      |+++|+|||||+||+.+|+.|++.+  .+|+|+++++..    .|..                  +.   +    +.   
T Consensus         1 m~~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~----~y~~------------------~~---l----~~---   48 (377)
T PRK04965          1 MSNGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGD----EYNK------------------PD---L----SH---   48 (377)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCC----CcCc------------------Cc---C----cH---
Confidence            6789999999999999999998864  689999987522    1100                  00   0    00   


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCCHHHHHH-HHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcE
Q 013303           79 GFQAYPFVARNYEGSVDLRRYPGHEEVLR-YLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA  157 (446)
Q Consensus        79 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~~-yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~  157 (446)
                      .+                ......+++.. ...+++++++++  ++++++|+++++..   ++|++. +    .++.||+
T Consensus        49 ~~----------------~~~~~~~~~~~~~~~~~~~~~gv~--~~~~~~V~~id~~~---~~v~~~-~----~~~~yd~  102 (377)
T PRK04965         49 VF----------------SQGQRADDLTRQSAGEFAEQFNLR--LFPHTWVTDIDAEA---QVVKSQ-G----NQWQYDK  102 (377)
T ss_pred             HH----------------hCCCCHHHhhcCCHHHHHHhCCCE--EECCCEEEEEECCC---CEEEEC-C----eEEeCCE
Confidence            00                00111234443 255677788887  88899999998754   566642 2    2689999


Q ss_pred             EEEccCCCCCCccCCCCCCCCCCccEEEeeecCCC-----CCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC-
Q 013303          158 VVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP-----NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-  231 (446)
Q Consensus       158 VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~-----~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~-  231 (446)
                      ||+|||  +.|..|++||.+.    +++.....+.     ....+++|+|||+|.+|+|+|..|++.+.+|+++++.+. 
T Consensus       103 LVlATG--~~~~~p~i~G~~~----v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~  176 (377)
T PRK04965        103 LVLATG--ASAFVPPIPGREL----MLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASL  176 (377)
T ss_pred             EEECCC--CCCCCCCCCCCce----EEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcc
Confidence            999999  8899999999753    2332221111     112578999999999999999999999999999998764 


Q ss_pred             -----ccc-----cccCCCCC-CeeeccceeEEccCCc---EEecCCcEEeecEEEEecCccCCCCCCCCCC-----eee
Q 013303          232 -----DET-----HEKQPGYD-NMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCTGYKYNYPFLETNG-----IVT  292 (446)
Q Consensus       232 -----~~~-----~~~~~~~~-~v~~~~~v~~i~~~~~---v~~~dG~~~~~D~vi~atG~~~~~~~l~~~g-----~i~  292 (446)
                           +..     .+.+.+.+ ++.....|.++..++.   +.+.||+++++|.||+|+|..|+..++...|     .+.
T Consensus       177 l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~gl~~~~gi~  256 (377)
T PRK04965        177 LASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNTALARRAGLAVNRGIV  256 (377)
T ss_pred             cchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcchHHHHHCCCCcCCCEE
Confidence                 110     11122222 4555678888875432   7788999999999999999999987753322     255


Q ss_pred             eCCCCcccccccccCCCCCCCeEEecCCCccC-----chhHHHHHHHHHHHHHcCCC
Q 013303          293 VDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI-----PFPFFELQSKWIASVLSGRI  344 (446)
Q Consensus       293 ~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~-----~~~~~~~qa~~~a~~l~g~~  344 (446)
                      +|++++          ++.|+||++|++....     ....+..||+++|++|.|..
T Consensus       257 vd~~l~----------ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~g~~  303 (377)
T PRK04965        257 VDSYLQ----------TSAPDIYALGDCAEINGQVLPFLQPIQLSAMALAKNLLGQN  303 (377)
T ss_pred             ECCCcc----------cCCCCEEEeeecEeECCceeehHHHHHHHHHHHHHHhcCCC
Confidence            665544          4589999999886321     23446789999999999863

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=99.97  E-value=2.4e-29  Score=258.70  Aligned_cols=322  Identities=16%  Similarity=0.197  Sum_probs=200.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeC-CCcCceeeeCCCCCCCCCCCCCCCCCccCC-ccCceeecCCCCCcc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG-EQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMG   79 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~-~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~-~y~~l~~~~~~~~~~   79 (446)
                      .+||+||||||+|++||..+++.|.+|+|||+. ..+||+|.+.        ||+|+|.++..+ .++.++.......++
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~--------GCiPsK~l~~~a~~~~~~~~~~~~~~~G  187 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNV--------GCIPSKALLYATGKYRELKNLAKLYTYG  187 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEe--------CCcchHHHHHHHHHHHHHHhccccccCC
Confidence            469999999999999999999999999999974 4699999986        999999877654 333332111001122


Q ss_pred             cC--CCCCCcCCCCCCCC---CCCCCCHHHHHHHHHHHHHHhC--CCC-----cEEeCeEEEEEEEcCC---CceEEEEE
Q 013303           80 FQ--AYPFVARNYEGSVD---LRRYPGHEEVLRYLQNFAREFG--VDQ-----VVRLHTEVLNARLVES---NKWKVKSR  144 (446)
Q Consensus        80 ~~--d~~~~~~~~~~~~~---~~~~~~~~~v~~yl~~~~~~~~--l~~-----~i~~~~~V~~v~~~~~---~~~~v~~~  144 (446)
                      ..  .||-..........   ...-+....+.++.+...+++.  +..     .+..++++..+.....   +..+|.+.
T Consensus       188 i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~  267 (659)
T PTZ00153        188 IYTNAFKNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSE  267 (659)
T ss_pred             eeeccccccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEc
Confidence            21  11110000000000   0112355666666666655531  110     0111122222322110   22344443


Q ss_pred             eCCCceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEE
Q 013303          145 KKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVH  224 (446)
Q Consensus       145 ~~~~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~  224 (446)
                      .. +  .++.||+||||||  +.|.+|++++.+.  ..++++.+....+ ..+++|+|||+|.+|+|+|..++..|++|+
T Consensus       268 ~~-g--~~i~ad~lIIATG--S~P~~P~~~~~~~--~~V~ts~d~~~l~-~lpk~VvIVGgG~iGvE~A~~l~~~G~eVT  339 (659)
T PTZ00153        268 KS-G--KEFKVKNIIIATG--STPNIPDNIEVDQ--KSVFTSDTAVKLE-GLQNYMGIVGMGIIGLEFMDIYTALGSEVV  339 (659)
T ss_pred             cC-C--EEEECCEEEEcCC--CCCCCCCCCCCCC--CcEEehHHhhhhh-hcCCceEEECCCHHHHHHHHHHHhCCCeEE
Confidence            21 1  3689999999999  8999888766543  2344443332222 247899999999999999999999999999


Q ss_pred             EEEecCC-----cc----cccc-CCC-C-CCeeeccceeEEccCCc---EE--ecC-------C--------cEEeecEE
Q 013303          225 IASRSVA-----DE----THEK-QPG-Y-DNMWLHSMVERANEDGT---VV--FRN-------G--------RVVSADVI  272 (446)
Q Consensus       225 l~~r~~~-----~~----~~~~-~~~-~-~~v~~~~~v~~i~~~~~---v~--~~d-------G--------~~~~~D~v  272 (446)
                      ++.+.+.     +.    .+.+ +.+ . -++..+..|.++..++.   +.  +.+       +        +++++|.|
T Consensus       340 LIe~~~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~V  419 (659)
T PTZ00153        340 SFEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSC  419 (659)
T ss_pred             EEeccCcccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEE
Confidence            9998764     11    1111 222 2 25666778888865431   33  321       1        26899999


Q ss_pred             EEecCccCCCCCCC--------CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCC
Q 013303          273 MHCTGYKYNYPFLE--------TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       273 i~atG~~~~~~~l~--------~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~  343 (446)
                      |+|||++|+..+|.        +.|.|.+|++++... .   .++..|+||++|++.. ....+.+..||+.++++|.|.
T Consensus       420 lvAtGr~Pnt~~L~l~~~gi~~~~G~I~VDe~lqTs~-~---~~~~v~~IYAiGDv~g~~~La~~A~~qg~~aa~ni~g~  495 (659)
T PTZ00153        420 LVATGRKPNTNNLGLDKLKIQMKRGFVSVDEHLRVLR-E---DQEVYDNIFCIGDANGKQMLAHTASHQALKVVDWIEGK  495 (659)
T ss_pred             EEEECcccCCccCCchhcCCcccCCEEeECCCCCcCC-C---CCCCCCCEEEEEecCCCccCHHHHHHHHHHHHHHHcCC
Confidence            99999999998752        235677777765200 0   0012589999999874 334578899999999999886

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=99.97  E-value=6.4e-29  Score=250.16  Aligned_cols=293  Identities=16%  Similarity=0.202  Sum_probs=189.2

Q ss_pred             eEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCc-cCceeecCCCCCcccCC
Q 013303            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSL-YKSLRVNLPRELMGFQA   82 (446)
Q Consensus         4 ~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~-y~~l~~~~~~~~~~~~d   82 (446)
                      +|+||||||||++||..|++.|.+|+|+|+. .+||+|.+.        ||+|+|.+++... +...+. ...  ++.  
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c~n~--------gciPsk~l~~~a~~~~~~~~-~~~--~g~--   67 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTCLNE--------GCMPTKSLLESAEVHDKVKK-ANH--FGI--   67 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccCCCC--------ccccchHHHHHHHHHHHHHH-HHh--cCc--
Confidence            8999999999999999999999999999986 589999876        9999987765432 222211 000  111  


Q ss_pred             CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHH-----------hCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceE
Q 013303           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-----------FGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVE  151 (446)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~-----------~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~  151 (446)
                       +...        .....+...+.++..+..++           .+++  + +..++..++  + ....|...++   ..
T Consensus        68 -~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~-~~g~a~~~~--~-~~v~v~~~~~---~~  129 (458)
T PRK06912         68 -TLPN--------GSISIDWKQMQARKSQIVTQLVQGIQYLMKKNKIK--V-IQGKASFET--D-HRVRVEYGDK---EE  129 (458)
T ss_pred             -cccC--------CCCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcE--E-EEEEEEEcc--C-CEEEEeeCCC---cE
Confidence             0000        00012334444444333332           2332  2 122333332  1 3344443221   24


Q ss_pred             EEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          152 EETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       152 ~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      ++.||+||||||  +.|+.|+++|.+.  ..++++.+..... ..+++|+|||+|++|+|+|..+++.+.+|+++.+.+.
T Consensus       130 ~~~~d~lviATG--s~p~~~p~~~~~~--~~v~~~~~~~~~~-~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~  204 (458)
T PRK06912        130 VVDAEQFIIAAG--SEPTELPFAPFDG--KWIINSKHAMSLP-SIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQ  204 (458)
T ss_pred             EEECCEEEEeCC--CCCCCCCCCCCCC--CeEEcchHHhCcc-ccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            689999999999  8888887777543  1244443322222 2368999999999999999999999999999998764


Q ss_pred             -----ccc-----cccCCCC-CCeeeccceeEEccCCc-EEec-CCc--EEeecEEEEecCccCCCCCCC--CCC-----
Q 013303          232 -----DET-----HEKQPGY-DNMWLHSMVERANEDGT-VVFR-NGR--VVSADVIMHCTGYKYNYPFLE--TNG-----  289 (446)
Q Consensus       232 -----~~~-----~~~~~~~-~~v~~~~~v~~i~~~~~-v~~~-dG~--~~~~D~vi~atG~~~~~~~l~--~~g-----  289 (446)
                           +..     .+.+.+. -++..+..|.+++.++. +.+. +|+  ++++|.||+|||++|+.+++.  ..|     
T Consensus       205 ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~  284 (458)
T PRK06912        205 LLPGEDEDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSN  284 (458)
T ss_pred             cCccccHHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCCCCCCchhcCceecC
Confidence                 111     1112222 25666778888865433 4443 443  588999999999999988652  212     


Q ss_pred             -eeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCC
Q 013303          290 -IVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       290 -~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~  343 (446)
                       .+.+|++.+          ++.|+||++|++.. ....+.+..|++.+|.++.|.
T Consensus       285 ~gi~Vd~~~~----------ts~~~VyA~GD~~~~~~la~~A~~~g~~aa~~~~g~  330 (458)
T PRK06912        285 KGISVNEHMQ----------TNVPHIYACGDVIGGIQLAHVAFHEGTTAALHASGE  330 (458)
T ss_pred             CCEEeCCCee----------cCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence             145554443          45899999999874 344577889999999999885

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=99.97  E-value=5.8e-29  Score=250.31  Aligned_cols=276  Identities=19%  Similarity=0.244  Sum_probs=188.1

Q ss_pred             CeEEEECcChHHHHHHHHHHHCC--CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCccc
Q 013303            3 RHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g--~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~   80 (446)
                      ++|+|||||+||+++|..|++.+  .+|+|||+++..+  |...        +                           
T Consensus         1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~--~~~~--------~---------------------------   43 (444)
T PRK09564          1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS--FGAC--------G---------------------------   43 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce--eecC--------C---------------------------
Confidence            47999999999999999999875  5899999987552  1100        0                           


Q ss_pred             CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEEE
Q 013303           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVV  159 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~VV  159 (446)
                        .|+..        ...+....++..+..+..++.+++  ++++++|++|++..   ..|++.+. .+....+.||+||
T Consensus        44 --~~~~~--------~~~~~~~~~~~~~~~~~~~~~gv~--~~~~~~V~~id~~~---~~v~~~~~~~~~~~~~~yd~lv  108 (444)
T PRK09564         44 --LPYFV--------GGFFDDPNTMIARTPEEFIKSGID--VKTEHEVVKVDAKN---KTITVKNLKTGSIFNDTYDKLM  108 (444)
T ss_pred             --CceEe--------ccccCCHHHhhcCCHHHHHHCCCe--EEecCEEEEEECCC---CEEEEEECCCCCEEEecCCEEE
Confidence              00000        001112234444445556667887  88899999998754   45555542 1222334499999


Q ss_pred             EccCCCCCCccCCCCCCCCCCccEEEeeecCCCC-------CCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC-
Q 013303          160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN-------PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-  231 (446)
Q Consensus       160 vAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~-------~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~-  231 (446)
                      +|||  +.|+.|.+||.+.  ..+.+...+.+..       ...+++|+|||+|.+|+|+|..+.+.+++|+++.+.+. 
T Consensus       109 iAtG--~~~~~~~i~g~~~--~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  184 (444)
T PRK09564        109 IATG--ARPIIPPIKNINL--ENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRI  184 (444)
T ss_pred             ECCC--CCCCCCCCCCcCC--CCEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCccc
Confidence            9999  8899999999753  1244443322111       23578999999999999999999999999999987653 


Q ss_pred             -----cccc-----ccCCCC-CCeeeccceeEEccCCc--EEecCCcEEeecEEEEecCccCCCCCCCC-------CCee
Q 013303          232 -----DETH-----EKQPGY-DNMWLHSMVERANEDGT--VVFRNGRVVSADVIMHCTGYKYNYPFLET-------NGIV  291 (446)
Q Consensus       232 -----~~~~-----~~~~~~-~~v~~~~~v~~i~~~~~--v~~~dG~~~~~D~vi~atG~~~~~~~l~~-------~g~i  291 (446)
                           +..+     +.+.+. .++.....|.++.+++.  ....++.++++|.||+|+|+.|+.+++..       .|.|
T Consensus       185 l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i  264 (444)
T PRK09564        185 LPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTDKGEYEADVVIVATGVKPNTEFLEDTGLKTLKNGAI  264 (444)
T ss_pred             CchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeCCCEEEcCEEEECcCCCcCHHHHHhcCccccCCCCE
Confidence                 1111     111222 25566778888865543  23345667999999999999999876543       3456


Q ss_pred             eeCCCCcccccccccCCCCCCCeEEecCCCcc-----------CchhHHHHHHHHHHHHHcCCC
Q 013303          292 TVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-----------IPFPFFELQSKWIASVLSGRI  344 (446)
Q Consensus       292 ~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-----------~~~~~~~~qa~~~a~~l~g~~  344 (446)
                      .+|+..+          ++.|+||++|++...           ...+.+..||+.+|++|.|..
T Consensus       265 ~vd~~~~----------t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g~~  318 (444)
T PRK09564        265 IVDEYGE----------TSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGRH  318 (444)
T ss_pred             EECCCcc----------cCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcCCC
Confidence            6666544          458999999988642           234678899999999999853

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.96  E-value=1.7e-28  Score=222.22  Aligned_cols=302  Identities=19%  Similarity=0.233  Sum_probs=208.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .+|.+|||||.+|+++|+..+..|.++.++|..-.+||+|...        ||.|.+.++..+.|.......       .
T Consensus        20 ~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~--------GCVPKKvm~~~a~~~~~~~da-------~   84 (478)
T KOG0405|consen   20 DFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNV--------GCVPKKVMWYAADYSEEMEDA-------K   84 (478)
T ss_pred             ccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEee--------ccccceeEEehhhhhHHhhhh-------h
Confidence            3689999999999999999999999999999987999999986        999998877777664332221       1


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-CCCcEEeCeEEEEEEEcCC--CceEEEEEeCCCceEEEEEcEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVES--NKWKVKSRKKDDVVEEETFDAV  158 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~-l~~~i~~~~~V~~v~~~~~--~~~~v~~~~~~~~~~~~~~d~V  158 (446)
                      +|-|+...       ..--.+..+.+--..|+.+++ +-+...-+..|.-|+-...  +.-.|+++..++....+++.++
T Consensus        85 ~yG~~~~~-------~~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~i  157 (478)
T KOG0405|consen   85 DYGFPINE-------EGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHI  157 (478)
T ss_pred             hcCCcccc-------ccCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceE
Confidence            23333221       111123444444444444431 2111222445554442210  1223344333333456899999


Q ss_pred             EEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC-----cc
Q 013303          159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-----DE  233 (446)
Q Consensus       159 VvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~-----~~  233 (446)
                      +||||  .+|.+|+|||.+.    .+.|..+.+.++ .+||++|||+|++|+|+|.-++.+|.+++++.|...     ++
T Consensus       158 LIAtG--g~p~~PnIpG~E~----gidSDgff~Lee-~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~FD~  230 (478)
T KOG0405|consen  158 LIATG--GRPIIPNIPGAEL----GIDSDGFFDLEE-QPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRGFDE  230 (478)
T ss_pred             EEEeC--CccCCCCCCchhh----ccccccccchhh-cCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcchhH
Confidence            99999  9999999999764    355555555554 468999999999999999999999999999999875     22


Q ss_pred             cc-----ccCCCCC-CeeeccceeEEccCC----cEEecCCcEEeecEEEEecCccCCCCCC---------CCCCeeeeC
Q 013303          234 TH-----EKQPGYD-NMWLHSMVERANEDG----TVVFRNGRVVSADVIMHCTGYKYNYPFL---------ETNGIVTVD  294 (446)
Q Consensus       234 ~~-----~~~~~~~-~v~~~~~v~~i~~~~----~v~~~dG~~~~~D~vi~atG~~~~~~~l---------~~~g~i~~~  294 (446)
                      .+     +.+...+ +++..+.+.++....    .+..+.|+...+|.++||+|+.|+..-|         ++.|.|.+|
T Consensus       231 ~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivD  310 (478)
T KOG0405|consen  231 MISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVD  310 (478)
T ss_pred             HHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEe
Confidence            22     2222222 555566666665322    1445666555699999999999997664         356677788


Q ss_pred             CCCcccccccccCCCCCCCeEEecCCC-ccCchhHHHHHHHHHHHHHcC
Q 013303          295 DNRVGPLYKHVFPPVLAPGLSFVGIPQ-KVIPFPFFELQSKWIASVLSG  342 (446)
Q Consensus       295 ~~~~~~l~~~~~~~~~~p~l~~iG~~~-~~~~~~~~~~qa~~~a~~l~g  342 (446)
                      ++..          ++.|+||++|+.. .....|.+-+.++-++..+-|
T Consensus       311 eYq~----------Tnvp~I~avGDv~gk~~LTPVAiaagr~la~rlF~  349 (478)
T KOG0405|consen  311 EYQN----------TNVPSIWAVGDVTGKINLTPVAIAAGRKLANRLFG  349 (478)
T ss_pred             cccc----------CCCCceEEeccccCcEecchHHHhhhhhHHHHhhc
Confidence            8776          7799999999876 456678999999998888776

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=99.96  E-value=2.4e-28  Score=244.70  Aligned_cols=260  Identities=25%  Similarity=0.329  Sum_probs=179.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||++||++|..|++.|++|+|||+.+.+||.+.+.                                   ++
T Consensus       133 ~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g-----------------------------------ip  177 (449)
T TIGR01316       133 HKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYG-----------------------------------IP  177 (449)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeec-----------------------------------CC
Confidence            4799999999999999999999999999999999999988752                                   00


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                      .+                ....++.+...+..++.++.  +++++.|.         ..+++.+.     ...||+||+|
T Consensus       178 ~~----------------~~~~~~~~~~~~~l~~~gv~--~~~~~~v~---------~~v~~~~~-----~~~yd~viiA  225 (449)
T TIGR01316       178 EF----------------RLPKEIVVTEIKTLKKLGVT--FRMNFLVG---------KTATLEEL-----FSQYDAVFIG  225 (449)
T ss_pred             Cc----------------cCCHHHHHHHHHHHHhCCcE--EEeCCccC---------CcCCHHHH-----HhhCCEEEEe
Confidence            01                11145556666666777877  77776441         22333221     2469999999


Q ss_pred             cCCCCCCccCCCCCCCCCCccEEEeeecC--------------CCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEE
Q 013303          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYR--------------IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIAS  227 (446)
Q Consensus       162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~--------------~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~  227 (446)
                      ||. +.|+.|.+||.+. .+ +++..++.              ......+++|+|||+|.+|+|+|..+++.|.+|+++.
T Consensus       226 tGa-~~p~~~~ipG~~~-~g-v~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~  302 (449)
T TIGR01316       226 TGA-GLPKLMNIPGEEL-CG-VYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLY  302 (449)
T ss_pred             CCC-CCCCcCCCCCCCC-CC-cEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEe
Confidence            994 2688899999763 22 33332221              1123468999999999999999999999999999999


Q ss_pred             ecCCcc------ccccCCCCC-CeeeccceeEEccC--Cc---EEec---------CC-----------cEEeecEEEEe
Q 013303          228 RSVADE------THEKQPGYD-NMWLHSMVERANED--GT---VVFR---------NG-----------RVVSADVIMHC  275 (446)
Q Consensus       228 r~~~~~------~~~~~~~~~-~v~~~~~v~~i~~~--~~---v~~~---------dG-----------~~~~~D~vi~a  275 (446)
                      |+...+      .+..+.+.+ .+.....+.++..+  +.   |.+.         +|           .++++|.||+|
T Consensus       303 ~~~~~~~~~~~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~A  382 (449)
T TIGR01316       303 RRTREDMTARVEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVA  382 (449)
T ss_pred             ecCcccCCCCHHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEEC
Confidence            876411      112222222 44555666666432  22   3332         23           25889999999


Q ss_pred             cCccCCCCCCCC-------CCeeeeCCCCcccccccccCCCCCCCeEEecCCCccC-chhHHHHHHHHHHHHHc
Q 013303          276 TGYKYNYPFLET-------NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI-PFPFFELQSKWIASVLS  341 (446)
Q Consensus       276 tG~~~~~~~l~~-------~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~-~~~~~~~qa~~~a~~l~  341 (446)
                      +|+.|+..+++.       .|.|.+|+..+          ++.|+||++|++..+. ....+..||+.+|..+.
T Consensus       383 iG~~p~~~~l~~~gl~~~~~G~i~vd~~~~----------Ts~~~VfA~GD~~~g~~~v~~Ai~~G~~AA~~I~  446 (449)
T TIGR01316       383 IGNGSNPIMAETTRLKTSERGTIVVDEDQR----------TSIPGVFAGGDIILGAATVIRAMGQGKRAAKSIN  446 (449)
T ss_pred             CCCCCCchhhhccCcccCCCCeEEeCCCCc----------cCCCCEEEecCCCCCcHHHHHHHHHHHHHHHHHH
Confidence            999999877643       34455555433          5589999999886433 45677889999998874

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=99.96  E-value=3e-28  Score=258.07  Aligned_cols=271  Identities=18%  Similarity=0.228  Sum_probs=191.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHC----CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLRE----GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPREL   77 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~----g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~   77 (446)
                      +++|+|||||+||+.+|..|++.    +++|+||++++.++    |.. .              ..+.|           
T Consensus         3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~----Y~r-~--------------~L~~~-----------   52 (847)
T PRK14989          3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA----YDR-V--------------HLSSY-----------   52 (847)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc----ccC-C--------------cchHh-----------
Confidence            45999999999999999999864    47999999987541    110 0              00000           


Q ss_pred             cccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcE
Q 013303           78 MGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA  157 (446)
Q Consensus        78 ~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~  157 (446)
                        +..                 ...+++.....++.++.+++  ++.+++|+.|++..   .+|++.++.    ++.||+
T Consensus        53 --~~~-----------------~~~~~l~~~~~~~~~~~gI~--~~~g~~V~~Id~~~---~~V~~~~G~----~i~yD~  104 (847)
T PRK14989         53 --FSH-----------------HTAEELSLVREGFYEKHGIK--VLVGERAITINRQE---KVIHSSAGR----TVFYDK  104 (847)
T ss_pred             --HcC-----------------CCHHHccCCCHHHHHhCCCE--EEcCCEEEEEeCCC---cEEEECCCc----EEECCE
Confidence              000                 01133333344556667887  88899999998643   566665543    789999


Q ss_pred             EEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCC-----CCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC-
Q 013303          158 VVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN-----PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-  231 (446)
Q Consensus       158 VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~-----~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~-  231 (446)
                      ||||||  +.|..|++||.+..  .++......+..     ...+++++|||+|.+|+|+|..|++.|.+|+++++.+. 
T Consensus       105 LVIATG--s~p~~p~ipG~~~~--~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~l  180 (847)
T PRK14989        105 LIMATG--SYPWIPPIKGSETQ--DCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPML  180 (847)
T ss_pred             EEECCC--CCcCCCCCCCCCCC--CeEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence            999999  89999999998642  122221211111     12578999999999999999999999999999998764 


Q ss_pred             -cc--------cc-ccCCCCC-CeeeccceeEEccCC-----cEEecCCcEEeecEEEEecCccCCCCCCC-------CC
Q 013303          232 -DE--------TH-EKQPGYD-NMWLHSMVERANEDG-----TVVFRNGRVVSADVIMHCTGYKYNYPFLE-------TN  288 (446)
Q Consensus       232 -~~--------~~-~~~~~~~-~v~~~~~v~~i~~~~-----~v~~~dG~~~~~D~vi~atG~~~~~~~l~-------~~  288 (446)
                       ..        .+ +.+.+.+ ++.....++++..++     .+.+.||+++++|.||+|+|++|+..++.       +.
T Consensus       181 l~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~  260 (847)
T PRK14989        181 MAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLATQCGLAVAPR  260 (847)
T ss_pred             hhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCchHHhhcCccCCCC
Confidence             10        11 1122222 566677888886432     27789999999999999999999987653       34


Q ss_pred             CeeeeCCCCcccccccccCCCCCCCeEEecCCCccC-----chhHHHHHHHHHHHHHcCCC
Q 013303          289 GIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI-----PFPFFELQSKWIASVLSGRI  344 (446)
Q Consensus       289 g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~-----~~~~~~~qa~~~a~~l~g~~  344 (446)
                      |.|.+|++++          +++|+||++|++....     ....+..||+.+|.+|.|..
T Consensus       261 G~I~VD~~l~----------Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i~g~~  311 (847)
T PRK14989        261 GGIVINDSCQ----------TSDPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHLLGSE  311 (847)
T ss_pred             CcEEECCCCc----------CCCCCEEEeecceeEcCcccccHHHHHHHHHHHHHHhcCCC
Confidence            5677777766          5699999999886431     23456789999999999864

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=99.96  E-value=6.5e-28  Score=253.85  Aligned_cols=269  Identities=20%  Similarity=0.252  Sum_probs=176.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||||||+||..|++.|++|+|||+.+.+||.+.+.                                   . 
T Consensus       539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~-----------------------------------I-  582 (1019)
T PRK09853        539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNI-----------------------------------I-  582 (1019)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeee-----------------------------------c-
Confidence            4789999999999999999999999999999999999988652                                   0 


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                     +.|....++.++..+++...|++  +++++.| .+...          ..    ....||+||||
T Consensus       583 ---------------P~~Rlp~evL~~die~l~~~GVe--~~~gt~V-di~le----------~L----~~~gYDaVILA  630 (1019)
T PRK09853        583 ---------------PQFRIPAELIQHDIEFVKAHGVK--FEFGCSP-DLTVE----------QL----KNEGYDYVVVA  630 (1019)
T ss_pred             ---------------ccccccHHHHHHHHHHHHHcCCE--EEeCcee-EEEhh----------hh----eeccCCEEEEC
Confidence                           01111134555556677778887  8888876 22211          11    13569999999


Q ss_pred             cCCCCCCccCCCCCCCCCCccEEEeeecC-----C-CCCCCCCEEEEEecCCcHHHHHHHHhcc-C-CEEEEEEecCC--
Q 013303          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYR-----I-PNPFQDQVVILIGHYASGLDIKRDLAGF-A-KEVHIASRSVA--  231 (446)
Q Consensus       162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~-----~-~~~~~~k~VvVVG~G~sg~eia~~l~~~-~-~~V~l~~r~~~--  231 (446)
                      ||. ..+..+.++|.+.   .+++..++.     . .....|++|+|||+|.+|+|+|..+.+. + ++|+++.|+..  
T Consensus       631 TGA-~~~~~l~IpG~~~---gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~  706 (1019)
T PRK09853        631 IGA-DKNGGLKLEGGNQ---NVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQE  706 (1019)
T ss_pred             cCC-CCCCCCCCCCccC---CceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCccc
Confidence            995 2355567887642   223322211     1 1123589999999999999999998877 3 58999998763  


Q ss_pred             ----ccccccCCCCC-CeeeccceeEEccCCcE-------------------EecCCcEEeecEEEEecCccCCCCCCCC
Q 013303          232 ----DETHEKQPGYD-NMWLHSMVERANEDGTV-------------------VFRNGRVVSADVIMHCTGYKYNYPFLET  287 (446)
Q Consensus       232 ----~~~~~~~~~~~-~v~~~~~v~~i~~~~~v-------------------~~~dG~~~~~D~vi~atG~~~~~~~l~~  287 (446)
                          .+.+....+.+ .+.....+.++..++.+                   ...++.++++|.||+|+|..|+.+++..
T Consensus       707 MPA~~eEle~AleeGVe~~~~~~p~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntelle~  786 (1019)
T PRK09853        707 MPAWREEYEEALEDGVEFKELLNPESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLKA  786 (1019)
T ss_pred             ccccHHHHHHHHHcCCEEEeCCceEEEEcCCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHHHh
Confidence                11111111111 33333344444322221                   1223356899999999999999888754


Q ss_pred             CCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCCCC
Q 013303          288 NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGRIV  345 (446)
Q Consensus       288 ~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~~~  345 (446)
                      .| +.+++... +..+..+. ++.|+||++|++.. ......+..||+.+|+++.+...
T Consensus       787 ~G-L~ld~~G~-I~VDetlq-Ts~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI~~~~~  842 (1019)
T PRK09853        787 NG-IPLDKKGW-PVVDANGE-TSLTNVYMIGDVQRGPSTIVAAIADARRAADAILSREG  842 (1019)
T ss_pred             cC-ccccCCCC-EEeCCCcc-cCCCCEEEEeccccCchHHHHHHHHHHHHHHHHhhhcC
Confidence            33 33332221 11122223 44899999998864 33456778999999999988665

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=99.96  E-value=5.5e-28  Score=239.14  Aligned_cols=272  Identities=12%  Similarity=0.157  Sum_probs=181.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC--cEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG   79 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~--~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~   79 (446)
                      +++|+|||||+||++||..|++.|.  +|+|+++++...    |..                 ...        ++....
T Consensus         3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~----y~r-----------------~~l--------~~~~~~   53 (396)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP----YER-----------------PPL--------SKSMLL   53 (396)
T ss_pred             cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC----CCC-----------------CCC--------CHHHHC
Confidence            4689999999999999999999876  799999875431    100                 000        000000


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEE
Q 013303           80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV  159 (446)
Q Consensus        80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VV  159 (446)
                         .+..         ...+...       .++..+.+++  ++.++.|..++...   .+|++.++.    ++.||+||
T Consensus        54 ---~~~~---------~~~~~~~-------~~~~~~~~i~--~~~g~~V~~id~~~---~~v~~~~g~----~~~yd~LV  105 (396)
T PRK09754         54 ---EDSP---------QLQQVLP-------ANWWQENNVH--LHSGVTIKTLGRDT---RELVLTNGE----SWHWDQLF  105 (396)
T ss_pred             ---CCCc---------cccccCC-------HHHHHHCCCE--EEcCCEEEEEECCC---CEEEECCCC----EEEcCEEE
Confidence               0000         0000000       1223345676  78888999998753   566665543    79999999


Q ss_pred             EccCCCCCCccCCCCCCCCCCccEEEeeecCCC-----CCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC---
Q 013303          160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP-----NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA---  231 (446)
Q Consensus       160 vAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~-----~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~---  231 (446)
                      +|||  +.|+.|++++...  ..+.......+.     ....+++|+|||+|.+|+|+|..|++.+.+|+++++.+.   
T Consensus       106 iATG--s~~~~~p~~~~~~--~~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~  181 (396)
T PRK09754        106 IATG--AAARPLPLLDALG--ERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMG  181 (396)
T ss_pred             EccC--CCCCCCCCCCcCC--CCEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchh
Confidence            9999  8887777665432  123222111111     112578999999999999999999999999999998664   


Q ss_pred             ---ccc----c-ccCCCCC-CeeeccceeEEccCCc--EEecCCcEEeecEEEEecCccCCCCCCCC-----CCeeeeCC
Q 013303          232 ---DET----H-EKQPGYD-NMWLHSMVERANEDGT--VVFRNGRVVSADVIMHCTGYKYNYPFLET-----NGIVTVDD  295 (446)
Q Consensus       232 ---~~~----~-~~~~~~~-~v~~~~~v~~i~~~~~--v~~~dG~~~~~D~vi~atG~~~~~~~l~~-----~g~i~~~~  295 (446)
                         +..    + +.+.+.+ ++..+..|+++..++.  +.+.||+++++|.||+|+|..|+..++..     ++.|.+|+
T Consensus       182 ~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~~gi~vd~  261 (396)
T PRK09754        182 RNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSGETLQADVVIYGIGISANDQLAREANLDTANGIVIDE  261 (396)
T ss_pred             hhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEcCCEEEEEECCCCEEECCEEEECCCCChhhHHHHhcCCCcCCCEEECC
Confidence               111    1 1111222 5566778888865433  56789999999999999999999776432     23466676


Q ss_pred             CCcccccccccCCCCCCCeEEecCCCcc----------CchhHHHHHHHHHHHHHcCCC
Q 013303          296 NRVGPLYKHVFPPVLAPGLSFVGIPQKV----------IPFPFFELQSKWIASVLSGRI  344 (446)
Q Consensus       296 ~~~~~l~~~~~~~~~~p~l~~iG~~~~~----------~~~~~~~~qa~~~a~~l~g~~  344 (446)
                      +++          ++.|+||++|++...          ..++.+..||+.+|++|.|..
T Consensus       262 ~~~----------ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g~~  310 (396)
T PRK09754        262 ACR----------TCDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAAAAMLGLP  310 (396)
T ss_pred             CCc----------cCCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcCCC
Confidence            655          558999999987521          123678999999999999863

>PRK12831 putative oxidoreductase; Provisional

Probab=99.96  E-value=3.4e-28  Score=244.00  Aligned_cols=271  Identities=21%  Similarity=0.250  Sum_probs=177.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||||||++|..|++.|++|+|||+.+.+||.+.+.                                   ++
T Consensus       140 ~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g-----------------------------------ip  184 (464)
T PRK12831        140 GKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYG-----------------------------------IP  184 (464)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeec-----------------------------------CC
Confidence            5799999999999999999999999999999999999998763                                   01


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                      .|.+               +.+++..+..++++++|+.  +++++.|..         .+++++..   ..+.||+||||
T Consensus       185 ~~~l---------------~~~~~~~~~~~~~~~~gv~--i~~~~~v~~---------~v~~~~~~---~~~~~d~viiA  235 (464)
T PRK12831        185 EFRL---------------PKETVVKKEIENIKKLGVK--IETNVVVGK---------TVTIDELL---EEEGFDAVFIG  235 (464)
T ss_pred             CccC---------------CccHHHHHHHHHHHHcCCE--EEcCCEECC---------cCCHHHHH---hccCCCEEEEe
Confidence            1111               1134667777778888887  888876521         12221111   13569999999


Q ss_pred             cCCCCCCccCCCCCCCCCCccEEEeeecC-------------CCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEe
Q 013303          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYR-------------IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR  228 (446)
Q Consensus       162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~-------------~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r  228 (446)
                      ||. ..|+.|++||.+. .| ++...++.             ......+|+|+|||+|.+|+|+|..+.+.|.+|+++.|
T Consensus       236 tGa-~~~~~l~ipG~~~-~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r  312 (464)
T PRK12831        236 SGA-GLPKFMGIPGENL-NG-VFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYR  312 (464)
T ss_pred             CCC-CCCCCCCCCCcCC-cC-cEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEee
Confidence            994 2688889999763 22 33222221             11235789999999999999999999999999999998


Q ss_pred             cCCcc------ccccCCCCC-CeeeccceeEEcc--CCc---EEec------------------CCc--EEeecEEEEec
Q 013303          229 SVADE------THEKQPGYD-NMWLHSMVERANE--DGT---VVFR------------------NGR--VVSADVIMHCT  276 (446)
Q Consensus       229 ~~~~~------~~~~~~~~~-~v~~~~~v~~i~~--~~~---v~~~------------------dG~--~~~~D~vi~at  276 (446)
                      ....+      .+..+.+.+ .+.....+.++..  ++.   |.+.                  +|+  ++++|.||+|+
T Consensus       313 ~~~~~m~a~~~e~~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~Ai  392 (464)
T PRK12831        313 RSEEELPARVEEVHHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSL  392 (464)
T ss_pred             cCcccCCCCHHHHHHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECC
Confidence            75311      111111122 3444455555542  222   2221                  233  58899999999


Q ss_pred             CccCCCCCCCC-CCeeeeCCCCcccccccccCCCCCCCeEEecCCCccC-chhHHHHHHHHHHHHHc
Q 013303          277 GYKYNYPFLET-NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI-PFPFFELQSKWIASVLS  341 (446)
Q Consensus       277 G~~~~~~~l~~-~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~-~~~~~~~qa~~~a~~l~  341 (446)
                      |+.|+..++.. .| +..++..........+. ++.|+||++|++..+. ....+..||+.+|..+.
T Consensus       393 G~~p~~~~~~~~~g-l~~~~~G~i~vd~~~~~-Ts~pgVfAaGD~~~g~~~v~~Ai~~G~~AA~~I~  457 (464)
T PRK12831        393 GTSPNPLISSTTKG-LKINKRGCIVADEETGL-TSKEGVFAGGDAVTGAATVILAMGAGKKAAKAID  457 (464)
T ss_pred             CCCCChhhhcccCC-ceECCCCcEEECCCCCc-cCCCCEEEeCCCCCCchHHHHHHHHHHHHHHHHH
Confidence            99999877653 22 33332211111111122 5589999999886433 34567778888877764

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=99.96  E-value=5.9e-28  Score=240.62  Aligned_cols=276  Identities=17%  Similarity=0.234  Sum_probs=182.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      +++|||||||+||+.+|+.|.+.+.+|+|||+++..    .+.                   ++..       ..     
T Consensus        10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~----~~~-------------------~~l~-------~~-----   54 (424)
T PTZ00318         10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM----LFT-------------------PLLP-------QT-----   54 (424)
T ss_pred             CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc----chh-------------------hhHH-------Hh-----
Confidence            579999999999999999998778899999987632    110                   0000       00     


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCC----CceEEEEEcE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD----DVVEEETFDA  157 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~----~~~~~~~~d~  157 (446)
                                    .......+++...+...++.+++.   ....+|++|+... ...++......    ....++.||+
T Consensus        55 --------------~~g~~~~~~~~~~~~~~~~~~~~~---~i~~~V~~Id~~~-~~v~~~~~~~~~~~~~~g~~i~yD~  116 (424)
T PTZ00318         55 --------------TTGTLEFRSICEPVRPALAKLPNR---YLRAVVYDVDFEE-KRVKCGVVSKSNNANVNTFSVPYDK  116 (424)
T ss_pred             --------------cccCCChHHhHHHHHHHhccCCeE---EEEEEEEEEEcCC-CEEEEecccccccccCCceEecCCE
Confidence                          000111234444556656655543   3467999998765 33333221110    1224799999


Q ss_pred             EEEccCCCCCCccCCCCCCCCC--Ccc-EEEeeecC--------CC--------CCCCCCEEEEEecCCcHHHHHHHHhc
Q 013303          158 VVVCNGHFSVPRLAQVPGIDSW--PGK-QMHSHNYR--------IP--------NPFQDQVVILIGHYASGLDIKRDLAG  218 (446)
Q Consensus       158 VVvAtG~~s~p~~p~i~G~~~~--~g~-~~hs~~~~--------~~--------~~~~~k~VvVVG~G~sg~eia~~l~~  218 (446)
                      ||+|||  +.|..|.+||.++.  ... +.+...++        ..        ...+.++|+|||+|.+|+|+|.+|+.
T Consensus       117 LViAtG--s~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~  194 (424)
T PTZ00318        117 LVVAHG--ARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELAD  194 (424)
T ss_pred             EEECCC--cccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHH
Confidence            999999  88999999997542  100 00000000        00        01233599999999999999999986


Q ss_pred             --------------cCCEEEEEEecCC-----ccc-----cccCCCCC-CeeeccceeEEccCCcEEecCCcEEeecEEE
Q 013303          219 --------------FAKEVHIASRSVA-----DET-----HEKQPGYD-NMWLHSMVERANEDGTVVFRNGRVVSADVIM  273 (446)
Q Consensus       219 --------------~~~~V~l~~r~~~-----~~~-----~~~~~~~~-~v~~~~~v~~i~~~~~v~~~dG~~~~~D~vi  273 (446)
                                    .+.+|+++++.+.     +..     .+.+.+.+ ++..+..|.++.++ .|.++||+++++|.||
T Consensus       195 ~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~-~v~~~~g~~i~~d~vi  273 (424)
T PTZ00318        195 FFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIRTKTAVKEVLDK-EVVLKDGEVIPTGLVV  273 (424)
T ss_pred             HHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeEEEEeCC-EEEECCCCEEEccEEE
Confidence                          3688999998754     111     11222222 56667889999765 4999999999999999


Q ss_pred             EecCccCCCCCC-------CCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCcc------CchhHHHHHHHHHHHHH
Q 013303          274 HCTGYKYNYPFL-------ETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV------IPFPFFELQSKWIASVL  340 (446)
Q Consensus       274 ~atG~~~~~~~l-------~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~------~~~~~~~~qa~~~a~~l  340 (446)
                      +|+|.+|+ +++       ++.|.|.+|++++.         +++|+||++|++...      .....+..||+++|++|
T Consensus       274 ~~~G~~~~-~~~~~~~l~~~~~G~I~Vd~~l~~---------~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni  343 (424)
T PTZ00318        274 WSTGVGPG-PLTKQLKVDKTSRGRISVDDHLRV---------KPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEF  343 (424)
T ss_pred             EccCCCCc-chhhhcCCcccCCCcEEeCCCccc---------CCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHH
Confidence            99999997 443       33466777776542         348999999998642      23456789999999998


Q ss_pred             cCC
Q 013303          341 SGR  343 (446)
Q Consensus       341 ~g~  343 (446)
                      .+.
T Consensus       344 ~~~  346 (424)
T PTZ00318        344 NNE  346 (424)
T ss_pred             HHH
Confidence            654

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=99.96  E-value=8.5e-28  Score=255.01  Aligned_cols=269  Identities=16%  Similarity=0.211  Sum_probs=188.4

Q ss_pred             EEEECcChHHHHHHHHHHHC---CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            5 VAVIGAGAAGLVVGHELLRE---GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         5 V~IIGaG~aGl~aA~~l~~~---g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      |+|||||+||+.+|..|++.   +++|+|||+++.++    |.. .                .        .+.      
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~----y~r-~----------------~--------L~~------   45 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN----YNR-I----------------L--------LSS------   45 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC----ccc-c----------------c--------ccH------
Confidence            68999999999999999875   46999999987552    110 0                0        000      


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                       +.            ....+.+++.....++.++.+++  ++++++|+.|++..   ++|++.++.    ++.||+||+|
T Consensus        46 -~l------------~g~~~~~~l~~~~~~~~~~~gv~--~~~g~~V~~Id~~~---k~V~~~~g~----~~~yD~LVlA  103 (785)
T TIGR02374        46 -VL------------QGEADLDDITLNSKDWYEKHGIT--LYTGETVIQIDTDQ---KQVITDAGR----TLSYDKLILA  103 (785)
T ss_pred             -HH------------CCCCCHHHccCCCHHHHHHCCCE--EEcCCeEEEEECCC---CEEEECCCc----EeeCCEEEEC
Confidence             00            00001123332334455667887  88899999998753   677776653    7899999999


Q ss_pred             cCCCCCCccCCCCCCCCCCccEEEeeecCCCC-----CCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc----
Q 013303          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN-----PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD----  232 (446)
Q Consensus       162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~-----~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~----  232 (446)
                      ||  +.|+.|++||.+. .+ +.......+..     ...+++|+|||+|.+|+|+|..|++.|.+|+++++.+..    
T Consensus       104 TG--s~p~~p~ipG~~~-~~-v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~  179 (785)
T TIGR02374       104 TG--SYPFILPIPGADK-KG-VYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQ  179 (785)
T ss_pred             CC--CCcCCCCCCCCCC-CC-EEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhhh
Confidence            99  8999999999764 22 22222111111     124789999999999999999999999999999987641    


Q ss_pred             --c----cc-ccCCCCC-CeeeccceeEEccCCc---EEecCCcEEeecEEEEecCccCCCCCCCC-----CCeeeeCCC
Q 013303          233 --E----TH-EKQPGYD-NMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCTGYKYNYPFLET-----NGIVTVDDN  296 (446)
Q Consensus       233 --~----~~-~~~~~~~-~v~~~~~v~~i~~~~~---v~~~dG~~~~~D~vi~atG~~~~~~~l~~-----~g~i~~~~~  296 (446)
                        .    .+ +.+.+.+ ++..+..+.++.+++.   |.|+||+++++|.||+|+|++|+.+++..     ++.|.+|++
T Consensus       180 ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la~~~gl~~~ggI~Vd~~  259 (785)
T TIGR02374       180 LDQTAGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPNDELAVSAGIKVNRGIIVNDS  259 (785)
T ss_pred             cCHHHHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcCcHHHHhcCCccCCCEEECCC
Confidence              0    01 1112222 5666777888865442   78899999999999999999999887532     244677776


Q ss_pred             CcccccccccCCCCCCCeEEecCCCccC-----chhHHHHHHHHHHHHHcCCC
Q 013303          297 RVGPLYKHVFPPVLAPGLSFVGIPQKVI-----PFPFFELQSKWIASVLSGRI  344 (446)
Q Consensus       297 ~~~~l~~~~~~~~~~p~l~~iG~~~~~~-----~~~~~~~qa~~~a~~l~g~~  344 (446)
                      ++          +++|+||++|++....     ....+..||+.+|++|.|..
T Consensus       260 ~~----------Ts~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~ni~g~~  302 (785)
T TIGR02374       260 MQ----------TSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHICGVE  302 (785)
T ss_pred             cc----------cCCCCEEEeeecceeCCcccccHHHHHHHHHHHHHHhcCCC
Confidence            55          5689999999885321     23446789999999999865

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=99.95  E-value=4.6e-27  Score=251.30  Aligned_cols=269  Identities=19%  Similarity=0.214  Sum_probs=183.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||||||+||..|++.|++|+|||+.+.+||.+.+.                                     
T Consensus       306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yG-------------------------------------  348 (944)
T PRK12779        306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYG-------------------------------------  348 (944)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEcc-------------------------------------
Confidence            4899999999999999999999999999999999999998873                                     


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                    .+.|-...++.+...+.++.+|+.  ++.|+.|-         ..+++++..    ...||+||||
T Consensus       349 --------------IP~~rlp~~vi~~~i~~l~~~Gv~--f~~n~~vG---------~dit~~~l~----~~~yDAV~LA  399 (944)
T PRK12779        349 --------------IPEFRLPNQLIDDVVEKIKLLGGR--FVKNFVVG---------KTATLEDLK----AAGFWKIFVG  399 (944)
T ss_pred             --------------CCCCcChHHHHHHHHHHHHhhcCe--EEEeEEec---------cEEeHHHhc----cccCCEEEEe
Confidence                          111222356777777788888887  77776542         223433321    3569999999


Q ss_pred             cCCCCCCccCCCCCCCCCCccEEEeeecC--------------CC-CCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEE
Q 013303          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYR--------------IP-NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIA  226 (446)
Q Consensus       162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~--------------~~-~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~  226 (446)
                      ||. ..|+.+++||.+. .| +....+|.              .+ ....||+|+|||+|.+|+|+|..+.+.|++|+++
T Consensus       400 tGA-~~pr~l~IpG~dl-~G-V~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv  476 (944)
T PRK12779        400 TGA-GLPTFMNVPGEHL-LG-VMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIV  476 (944)
T ss_pred             CCC-CCCCcCCCCCCcC-cC-cEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEE
Confidence            995 3688899999753 22 22222211              01 1247899999999999999999999999999999


Q ss_pred             EecCCc------cccccCCCC-CCeeeccceeEEccC--C-cE---Ee-----------------cCCc--EEeecEEEE
Q 013303          227 SRSVAD------ETHEKQPGY-DNMWLHSMVERANED--G-TV---VF-----------------RNGR--VVSADVIMH  274 (446)
Q Consensus       227 ~r~~~~------~~~~~~~~~-~~v~~~~~v~~i~~~--~-~v---~~-----------------~dG~--~~~~D~vi~  274 (446)
                      .|++..      ..+....+. ..+.....+.+|..+  + .|   .+                 .+|+  ++++|.||+
T Consensus       477 ~rr~~~~mpa~~~e~~~a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~  556 (944)
T PRK12779        477 YRRTKSEMPARVEELHHALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIM  556 (944)
T ss_pred             EecCcccccccHHHHHHHHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEE
Confidence            987531      111111111 233344455555432  1 11   11                 1232  488999999


Q ss_pred             ecCccCCCCCCC--------CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCccC-chhHHHHHHHHHHHHHcCCCC
Q 013303          275 CTGYKYNYPFLE--------TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI-PFPFFELQSKWIASVLSGRIV  345 (446)
Q Consensus       275 atG~~~~~~~l~--------~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~-~~~~~~~qa~~~a~~l~g~~~  345 (446)
                      |+|+.|+..+..        +.|.|.+|+.        .+. |+.|+||++|++..+. ....+..+++.+|..+...+.
T Consensus       557 AiG~~p~~~l~~~~~gle~~~~G~I~vd~~--------~~~-Ts~pgVFAaGD~~~G~~~vv~Ai~eGr~AA~~I~~~L~  627 (944)
T PRK12779        557 ALGNTANPIMKDAEPGLKTNKWGTIEVEKG--------SQR-TSIKGVYSGGDAARGGSTAIRAAGDGQAAAKEIVGEIP  627 (944)
T ss_pred             cCCcCCChhhhhcccCceECCCCCEEECCC--------CCc-cCCCCEEEEEcCCCChHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999864422        2233444432        122 4589999999987543 446677899999999887666


Q ss_pred             CCC
Q 013303          346 LPS  348 (446)
Q Consensus       346 lp~  348 (446)
                      +..
T Consensus       628 ~~~  630 (944)
T PRK12779        628 FTP  630 (944)
T ss_pred             ccc
Confidence            543

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=99.95  E-value=3.1e-27  Score=237.89  Aligned_cols=260  Identities=23%  Similarity=0.291  Sum_probs=178.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+||||||+||++|..|++.|++|+|||+.+.+||.+.+..                                    
T Consensus       140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gi------------------------------------  183 (457)
T PRK11749        140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGI------------------------------------  183 (457)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccC------------------------------------
Confidence            47999999999999999999999999999999999999876520                                    


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                     +.+....++.++..+.+++++++  +++++.|..         .+++.+.     ...||+||+|
T Consensus       184 ---------------p~~~~~~~~~~~~~~~l~~~gv~--~~~~~~v~~---------~v~~~~~-----~~~~d~vvlA  232 (457)
T PRK11749        184 ---------------PEFRLPKDIVDREVERLLKLGVE--IRTNTEVGR---------DITLDEL-----RAGYDAVFIG  232 (457)
T ss_pred             ---------------CCccCCHHHHHHHHHHHHHcCCE--EEeCCEECC---------ccCHHHH-----HhhCCEEEEc
Confidence                           00111246677777778888877  777776521         1111111     2679999999


Q ss_pred             cCCCCCCccCCCCCCCCCCccEEEeeecCC--------CCCCCCCEEEEEecCCcHHHHHHHHhccCC-EEEEEEecCCc
Q 013303          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRI--------PNPFQDQVVILIGHYASGLDIKRDLAGFAK-EVHIASRSVAD  232 (446)
Q Consensus       162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~~--------~~~~~~k~VvVVG~G~sg~eia~~l~~~~~-~V~l~~r~~~~  232 (446)
                      ||. ..|+.+.+||.+. .+ +++..++..        .....+++|+|||+|.+|+|+|..+++.+. +|+++.+++..
T Consensus       233 tGa-~~~~~~~i~G~~~-~g-v~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~  309 (457)
T PRK11749        233 TGA-GLPRFLGIPGENL-GG-VYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGRE  309 (457)
T ss_pred             cCC-CCCCCCCCCCccC-CC-cEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcc
Confidence            994 2477778888753 22 333322211        112368999999999999999999999877 89999986531


Q ss_pred             ------cccccCCCCC-CeeeccceeEEccCCc----EEec-------------------CCcEEeecEEEEecCccCCC
Q 013303          233 ------ETHEKQPGYD-NMWLHSMVERANEDGT----VVFR-------------------NGRVVSADVIMHCTGYKYNY  282 (446)
Q Consensus       233 ------~~~~~~~~~~-~v~~~~~v~~i~~~~~----v~~~-------------------dG~~~~~D~vi~atG~~~~~  282 (446)
                            ..+..+.+.+ ++.....+.++..++.    |.+.                   +++++++|.||+|+|++|+.
T Consensus       310 ~~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~  389 (457)
T PRK11749        310 EMPASEEEVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNP  389 (457)
T ss_pred             cCCCCHHHHHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCc
Confidence                  1111222222 4555667777754431    4442                   22468999999999999996


Q ss_pred             CCCC--------CCCeeeeCC-CCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHc
Q 013303          283 PFLE--------TNGIVTVDD-NRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLS  341 (446)
Q Consensus       283 ~~l~--------~~g~i~~~~-~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~  341 (446)
                      .++.        +.|.+.+|+ ..+          ++.|+||++|++..+ .....+..||+.+|.++.
T Consensus       390 ~l~~~~~gl~~~~~g~i~vd~~~~~----------Ts~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~I~  448 (457)
T PRK11749        390 LILSTTPGLELNRWGTIIADDETGR----------TSLPGVFAGGDIVTGAATVVWAVGDGKDAAEAIH  448 (457)
T ss_pred             hhhccccCccCCCCCCEEeCCCCCc----------cCCCCEEEeCCcCCCchHHHHHHHHHHHHHHHHH
Confidence            6543        234455554 222          458999999988643 345667889998887764

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=99.95  E-value=2.2e-27  Score=217.69  Aligned_cols=311  Identities=18%  Similarity=0.222  Sum_probs=203.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCC-ccCceeec-CCCCCcc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVN-LPRELMG   79 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~-~y~~l~~~-~~~~~~~   79 (446)
                      .+||+|||+||+|..||...++.|++.+++|++..+||+|...        ||+||++++..+ +|+.+... .......
T Consensus        39 d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnv--------GcIPSKALL~nSh~yh~~q~~~~~~rGi~  110 (506)
T KOG1335|consen   39 DYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNV--------GCIPSKALLNNSHLYHEAQHEDFASRGID  110 (506)
T ss_pred             cCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeec--------cccccHHHhhhhHHHHHHhhhHHHhcCcc
Confidence            4799999999999999999999999999999999999999986        999999888654 56555441 1111111


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh--CCCCcEEeCeEEEEEEEcCC--CceEEEEEeCCCceEEEEE
Q 013303           80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF--GVDQVVRLHTEVLNARLVES--NKWKVKSRKKDDVVEEETF  155 (446)
Q Consensus        80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~--~l~~~i~~~~~V~~v~~~~~--~~~~v~~~~~~~~~~~~~~  155 (446)
                      .+..               -...+.+.+...+.++++  ++...+. ..+|+.+.-...  +..+|.+...+++.+.+.+
T Consensus       111 vs~~---------------~~dl~~~~~~k~~~vk~Lt~gi~~lfk-knkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~a  174 (506)
T KOG1335|consen  111 VSSV---------------SLDLQAMMKAKDNAVKQLTGGIENLFK-KNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKA  174 (506)
T ss_pred             ccce---------------ecCHHHHHHHHHHHHHHHhhHHHHHhh-hcCeEEEeeeEeecCCceEEEeccCCCceEEee
Confidence            1111               112344555554444443  2221111 123333332111  4466777666667789999


Q ss_pred             cEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC----
Q 013303          156 DAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----  231 (446)
Q Consensus       156 d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~----  231 (446)
                      +.+|||||  |  .++++||+.--..+++.| .-...-..-+++.+|||+|.+|+|++.-..++|.+||++.--+.    
T Consensus       175 KnIiiATG--S--eV~~~PGI~IDekkIVSS-tgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~  249 (506)
T KOG1335|consen  175 KNIIIATG--S--EVTPFPGITIDEKKIVSS-TGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV  249 (506)
T ss_pred             eeEEEEeC--C--ccCCCCCeEecCceEEec-CCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc
Confidence            99999999  5  234566764222334443 33223344679999999999999999999999999999987654    


Q ss_pred             -cc----ccccCC-CCC-CeeeccceeEEccCCc----EEecC---C--cEEeecEEEEecCccCCCCCCC--CCCeeee
Q 013303          232 -DE----THEKQP-GYD-NMWLHSMVERANEDGT----VVFRN---G--RVVSADVIMHCTGYKYNYPFLE--TNGIVTV  293 (446)
Q Consensus       232 -~~----~~~~~~-~~~-~v~~~~~v~~i~~~~~----v~~~d---G--~~~~~D~vi~atG~~~~~~~l~--~~g~i~~  293 (446)
                       +.    .++++. +++ .+.+.+.+...+.++.    |.+.|   |  ++++||++++|+|++|-+.-|+  .-| +..
T Consensus       250 mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iG-i~~  328 (506)
T KOG1335|consen  250 MDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIG-IEL  328 (506)
T ss_pred             cCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcc-ccc
Confidence             11    112222 222 5667777877765443    44433   3  3588999999999998776654  223 333


Q ss_pred             CCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCCC
Q 013303          294 DDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGRI  344 (446)
Q Consensus       294 ~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~~  344 (446)
                      |...+. .....|. +..|+||+||++..+ ...+-+|-|+..+.+.++|..
T Consensus       329 D~r~rv-~v~~~f~-t~vP~i~~IGDv~~gpMLAhkAeeegI~~VE~i~g~~  378 (506)
T KOG1335|consen  329 DKRGRV-IVNTRFQ-TKVPHIYAIGDVTLGPMLAHKAEEEGIAAVEGIAGGH  378 (506)
T ss_pred             ccccce-ecccccc-ccCCceEEecccCCcchhhhhhhhhchhheeeecccC
Confidence            444332 2233344 349999999987643 334667899999999999873

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=99.95  E-value=2e-27  Score=227.86  Aligned_cols=274  Identities=18%  Similarity=0.252  Sum_probs=187.9

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCC--CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCc
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM   78 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g--~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~   78 (446)
                      ++++|||||||.+|+.+|+.|.+..  .+|+++|+++.-                           .+..+.....    
T Consensus         2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h---------------------------l~~plL~eva----   50 (405)
T COG1252           2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH---------------------------LFTPLLYEVA----   50 (405)
T ss_pred             CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcc---------------------------ccchhhhhhh----
Confidence            4789999999999999999999974  899999997521                           1111111110    


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-CCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcE
Q 013303           79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA  157 (446)
Q Consensus        79 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~-l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~  157 (446)
                                        ....+.+++.--++..+++.+ +.   ....+|++|+.+.   .+|++.++.    ++.||+
T Consensus        51 ------------------~g~l~~~~i~~p~~~~~~~~~~v~---~~~~~V~~ID~~~---k~V~~~~~~----~i~YD~  102 (405)
T COG1252          51 ------------------TGTLSESEIAIPLRALLRKSGNVQ---FVQGEVTDIDRDA---KKVTLADLG----EISYDY  102 (405)
T ss_pred             ------------------cCCCChhheeccHHHHhcccCceE---EEEEEEEEEcccC---CEEEeCCCc----cccccE
Confidence                              111222444444556555443 32   2356899998855   788887733    799999


Q ss_pred             EEEccCCCCCCccCCCCCCCCCCccEEEee-----------ecCCCCCCCC----CEEEEEecCCcHHHHHHHHhccCC-
Q 013303          158 VVVCNGHFSVPRLAQVPGIDSWPGKQMHSH-----------NYRIPNPFQD----QVVILIGHYASGLDIKRDLAGFAK-  221 (446)
Q Consensus       158 VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~-----------~~~~~~~~~~----k~VvVVG~G~sg~eia~~l~~~~~-  221 (446)
                      ||||+|  +.++.+.+||..++.-..-...           .+...+....    .+|+|||||++|+|+|.+|++... 
T Consensus       103 LVvalG--s~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~  180 (405)
T COG1252         103 LVVALG--SETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHR  180 (405)
T ss_pred             EEEecC--CcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHH
Confidence            999999  9999999999766421110000           0111111111    379999999999999999986422 


Q ss_pred             ------------EEEEEEecCC-----cccc----c-cCCCCC-CeeeccceeEEccCCcEEecCCcE-EeecEEEEecC
Q 013303          222 ------------EVHIASRSVA-----DETH----E-KQPGYD-NMWLHSMVERANEDGTVVFRNGRV-VSADVIMHCTG  277 (446)
Q Consensus       222 ------------~V~l~~r~~~-----~~~~----~-~~~~~~-~v~~~~~v~~i~~~~~v~~~dG~~-~~~D~vi~atG  277 (446)
                                  +|+++.+.+.     ++.+    . .+.+.+ ++.++..|+++++++ |++.+|.+ +++|.+|||+|
T Consensus       181 l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~-v~~~~g~~~I~~~tvvWaaG  259 (405)
T COG1252         181 LLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDG-VTLKDGEEEIPADTVVWAAG  259 (405)
T ss_pred             HhhhhcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCCCEEEcCCceEEECCCc-EEEccCCeeEecCEEEEcCC
Confidence                        8999999886     1111    1 122223 778889999998876 99999985 99999999999


Q ss_pred             ccCCC------CCC-CCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCcc-------CchhHHHHHHHHHHHHHcCC
Q 013303          278 YKYNY------PFL-ETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-------IPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       278 ~~~~~------~~l-~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-------~~~~~~~~qa~~~a~~l~g~  343 (446)
                      .+++.      +.- +..|++.++++.+.         ..+|+||++|++...       +..+.+..||.++|+++..+
T Consensus       260 v~a~~~~~~l~~~e~dr~Grl~V~~~L~~---------~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~~  330 (405)
T COG1252         260 VRASPLLKDLSGLETDRRGRLVVNPTLQV---------PGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKAR  330 (405)
T ss_pred             CcCChhhhhcChhhhccCCCEEeCCCccc---------CCCCCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHHHH
Confidence            99872      211 23477888887764         348999999998632       33466788999999998755


Q ss_pred             CC
Q 013303          344 IV  345 (446)
Q Consensus       344 ~~  345 (446)
                      +.
T Consensus       331 l~  332 (405)
T COG1252         331 LK  332 (405)
T ss_pred             hc
Confidence            43

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=99.95  E-value=4e-26  Score=222.25  Aligned_cols=274  Identities=22%  Similarity=0.249  Sum_probs=177.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||++|+.+|..|++.|++|++||+.+.+||.+....                                   +
T Consensus        18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~-----------------------------------~   62 (352)
T PRK12770         18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGI-----------------------------------P   62 (352)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecC-----------------------------------c
Confidence            46999999999999999999999999999999999998876420                                   0


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEE---cCCCceEEEEEeCCCceEEEEEcEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARL---VESNKWKVKSRKKDDVVEEETFDAV  158 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~---~~~~~~~v~~~~~~~~~~~~~~d~V  158 (446)
                      .+.               .+.+.+...+.++.+ .++.  ++.++.|..+..   ...+.|........  ...+.||+|
T Consensus        63 ~~~---------------~~~~~~~~~~~~l~~-~~i~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~l  122 (352)
T PRK12770         63 EFR---------------IPIERVREGVKELEE-AGVV--FHTRTKVCCGEPLHEEEGDEFVERIVSLE--ELVKKYDAV  122 (352)
T ss_pred             ccc---------------cCHHHHHHHHHHHHh-CCeE--EecCcEEeeccccccccccccccccCCHH--HHHhhCCEE
Confidence            000               112344555555544 4776  788888766532   11122222211111  113689999


Q ss_pred             EEccCCCCCCccCCCCCCCCCCccEEEeee-----------c---CCCCCCCCCEEEEEecCCcHHHHHHHHhccCCE-E
Q 013303          159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHN-----------Y---RIPNPFQDQVVILIGHYASGLDIKRDLAGFAKE-V  223 (446)
Q Consensus       159 VvAtG~~s~p~~p~i~G~~~~~g~~~hs~~-----------~---~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~-V  223 (446)
                      |+|||. ..|+.|++||.+. .+ +..+.+           +   +....+.+++|+|||+|.+|+|+|..|+..+.+ |
T Consensus       123 viAtGs-~~~~~~~ipg~~~-~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~V  199 (352)
T PRK12770        123 LIATGT-WKSRKLGIPGEDL-PG-VYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKV  199 (352)
T ss_pred             EEEeCC-CCCCcCCCCCccc-cC-ceeHHHHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeE
Confidence            999993 2578888998753 11 222110           1   111234589999999999999999999888876 9


Q ss_pred             EEEEecCCc------cccccCCCCC-CeeeccceeEEccCCc---EEec------------------C--CcEEeecEEE
Q 013303          224 HIASRSVAD------ETHEKQPGYD-NMWLHSMVERANEDGT---VVFR------------------N--GRVVSADVIM  273 (446)
Q Consensus       224 ~l~~r~~~~------~~~~~~~~~~-~v~~~~~v~~i~~~~~---v~~~------------------d--G~~~~~D~vi  273 (446)
                      +++.+.+..      ..+..+...+ .+.....+.++.+++.   |.+.                  +  ++++++|.||
T Consensus       200 tvi~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi  279 (352)
T PRK12770        200 YLAYRRTINEAPAGKYEIERLIARGVEFLELVTPVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVV  279 (352)
T ss_pred             EEEeecchhhCCCCHHHHHHHHHcCCEEeeccCceeeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEE
Confidence            999986531      1112222222 4444556666654432   2221                  2  2468899999


Q ss_pred             EecCccCCCCCCCC--------CCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCC
Q 013303          274 HCTGYKYNYPFLET--------NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       274 ~atG~~~~~~~l~~--------~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~  343 (446)
                      +|+|++|+..+..+        .|.+.+|++..          ++.|+||++|++.. ......+..||+.+|..+...
T Consensus       280 ~a~G~~p~~~l~~~~~g~~~~~~g~i~vd~~~~----------t~~~~vyaiGD~~~~~~~~~~A~~~g~~aa~~i~~~  348 (352)
T PRK12770        280 FAIGEIPTPPFAKECLGIELNRKGEIVVDEKHM----------TSREGVFAAGDVVTGPSKIGKAIKSGLRAAQSIHEW  348 (352)
T ss_pred             ECcccCCCchhhhcccCceecCCCcEeeCCCcc----------cCCCCEEEEcccccCcchHHHHHHHHHHHHHHHHHH
Confidence            99999999876543        23344444332          44899999998764 334566788999988887543

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=99.95  E-value=1.6e-26  Score=245.52  Aligned_cols=262  Identities=22%  Similarity=0.299  Sum_probs=175.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||||||+||..|++.|++|+|||+.+.+||.+.+.                                   ++
T Consensus       431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g-----------------------------------ip  475 (752)
T PRK12778        431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYG-----------------------------------IP  475 (752)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec-----------------------------------CC
Confidence            4799999999999999999999999999999998899998762                                   11


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                      +|.+                ..++.+...+.+++++++  ++.++.|.         ..|++++.    ....||+||||
T Consensus       476 ~~rl----------------p~~~~~~~~~~l~~~gv~--~~~~~~v~---------~~v~~~~l----~~~~ydavvlA  524 (752)
T PRK12778        476 EFRL----------------PKKIVDVEIENLKKLGVK--FETDVIVG---------KTITIEEL----EEEGFKGIFIA  524 (752)
T ss_pred             CCCC----------------CHHHHHHHHHHHHHCCCE--EECCCEEC---------CcCCHHHH----hhcCCCEEEEe
Confidence            1111                134555556667778877  77776541         11222221    14569999999


Q ss_pred             cCCCCCCccCCCCCCCCCCccEEEeeecC-------------CCCCCCCCEEEEEecCCcHHHHHHHHhccCCE-EEEEE
Q 013303          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYR-------------IPNPFQDQVVILIGHYASGLDIKRDLAGFAKE-VHIAS  227 (446)
Q Consensus       162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~-------------~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~-V~l~~  227 (446)
                      ||. ..|+.|++||.+. .| ++++.++.             ......||+|+|||+|.+|+|+|..+.+.|.+ |++++
T Consensus       525 tGa-~~~~~l~ipG~~~-~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~  601 (752)
T PRK12778        525 SGA-GLPNFMNIPGENS-NG-VMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVY  601 (752)
T ss_pred             CCC-CCCCCCCCCCCCC-CC-cEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEee
Confidence            994 2688889999763 22 33333221             11234689999999999999999999999886 99999


Q ss_pred             ecCCcc------ccccCCCCC-CeeeccceeEEcc--CCc---EEec---------C---------C--cEEeecEEEEe
Q 013303          228 RSVADE------THEKQPGYD-NMWLHSMVERANE--DGT---VVFR---------N---------G--RVVSADVIMHC  275 (446)
Q Consensus       228 r~~~~~------~~~~~~~~~-~v~~~~~v~~i~~--~~~---v~~~---------d---------G--~~~~~D~vi~a  275 (446)
                      |++...      .+..+.+.+ .+.....+.++..  ++.   |.+.         +         |  .++++|.||+|
T Consensus       602 r~~~~~~~~~~~e~~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A  681 (752)
T PRK12778        602 RRSEEEMPARLEEVKHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVS  681 (752)
T ss_pred             ecCcccCCCCHHHHHHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEEC
Confidence            876411      111111122 3333444555532  122   2221         2         2  24889999999


Q ss_pred             cCccCCCCCCCC--------CCeeeeCCCCcccccccccCCCCCCCeEEecCCCccC-chhHHHHHHHHHHHHHcC
Q 013303          276 TGYKYNYPFLET--------NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI-PFPFFELQSKWIASVLSG  342 (446)
Q Consensus       276 tG~~~~~~~l~~--------~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~-~~~~~~~qa~~~a~~l~g  342 (446)
                      +|+.|+..++..        .|.|.+|+...          ++.|+||++|++..+. ....+..|++.+|..+..
T Consensus       682 ~G~~p~~~l~~~~~gl~~~~~G~i~vd~~~~----------Ts~~gVfA~GD~~~g~~~vv~Av~~G~~AA~~I~~  747 (752)
T PRK12778        682 VGVSPNPLVPSSIPGLELNRKGTIVVDEEMQ----------SSIPGIYAGGDIVRGGATVILAMGDGKRAAAAIDE  747 (752)
T ss_pred             cCCCCCccccccccCceECCCCCEEeCCCCC----------CCCCCEEEeCCccCCcHHHHHHHHHHHHHHHHHHH
Confidence            999999876543        23344444332          5589999999987543 456678888888887743

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=4.1e-26  Score=194.77  Aligned_cols=263  Identities=18%  Similarity=0.260  Sum_probs=186.4

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeC----CCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCc
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKG----EQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM   78 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~----~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~   78 (446)
                      .+|+|||.|||+-+||.++++..++.++||-.    -.+||+...+..+                              -
T Consensus         9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~v------------------------------e   58 (322)
T KOG0404|consen    9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDV------------------------------E   58 (322)
T ss_pred             eeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeecc------------------------------c
Confidence            48999999999999999999999999999942    2346666543222                              1


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEE
Q 013303           79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV  158 (446)
Q Consensus        79 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~V  158 (446)
                      .|+.||-             =..+.++.+.+++.+++||.+  | +...|.+++... ..|+|.++..     .+.+|.|
T Consensus        59 NfPGFPd-------------gi~G~~l~d~mrkqs~r~Gt~--i-~tEtVskv~~ss-kpF~l~td~~-----~v~~~av  116 (322)
T KOG0404|consen   59 NFPGFPD-------------GITGPELMDKMRKQSERFGTE--I-ITETVSKVDLSS-KPFKLWTDAR-----PVTADAV  116 (322)
T ss_pred             cCCCCCc-------------ccccHHHHHHHHHHHHhhcce--e-eeeehhhccccC-CCeEEEecCC-----ceeeeeE
Confidence            2333332             134689999999999999987  3 456888888765 6788887553     6899999


Q ss_pred             EEccCCCCCCccCCCCCC-CC-CCccEEEeeecCCCCC--CCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC---
Q 013303          159 VVCNGHFSVPRLAQVPGI-DS-WPGKQMHSHNYRIPNP--FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA---  231 (446)
Q Consensus       159 VvAtG~~s~p~~p~i~G~-~~-~~g~~~hs~~~~~~~~--~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~---  231 (446)
                      |+|||  ...+...+||. +. |..+.+.++..++...  |++|..+|||||.|++|-|..|.+.+++|++++|++.   
T Consensus       117 I~atG--AsAkRl~~pg~ge~~fWqrGiSaCAVCDGaapifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRA  194 (322)
T KOG0404|consen  117 ILATG--ASAKRLHLPGEGEGEFWQRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRA  194 (322)
T ss_pred             EEecc--cceeeeecCCCCcchHHhcccchhhcccCcchhhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhH
Confidence            99999  66666677776 33 7777788888888765  9999999999999999999999999999999999886   


Q ss_pred             cc-ccccCCCCCCeee--ccceeEEccCCc----EEec---CC--cEEeecEEEEecCccCCCCCCCCCCeeeeCCCCcc
Q 013303          232 DE-THEKQPGYDNMWL--HSMVERANEDGT----VVFR---NG--RVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVG  299 (446)
Q Consensus       232 ~~-~~~~~~~~~~v~~--~~~v~~i~~~~~----v~~~---dG--~~~~~D~vi~atG~~~~~~~l~~~g~i~~~~~~~~  299 (446)
                      .. +.++..+..+|..  +..+.+..++++    +.+.   .|  +.++++-++++.|..|+..||+.  .+..|.+...
T Consensus       195 s~~Mq~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l~g--qve~d~~GYi  272 (322)
T KOG0404|consen  195 SKIMQQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKFLKG--QVELDEDGYI  272 (322)
T ss_pred             HHHHHHHHhcCCCeEEEechhhhhhccCcccccceEEEecccCcccccccceeEEEecCCchhhHhcC--ceeeccCceE
Confidence            11 1223333444433  333334434432    3322   23  45889999999999999999853  2333333221


Q ss_pred             cccccccCCCCCCCeEEecCCCc
Q 013303          300 PLYKHVFPPVLAPGLSFVGIPQK  322 (446)
Q Consensus       300 ~l~~~~~~~~~~p~l~~iG~~~~  322 (446)
                      ..-..... ++.|++|+.|++.+
T Consensus       273 ~t~pgts~-TsvpG~FAAGDVqD  294 (322)
T KOG0404|consen  273 VTRPGTSL-TSVPGVFAAGDVQD  294 (322)
T ss_pred             EeccCccc-ccccceeeccccch
Confidence            11111111 56999999997764

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=99.94  E-value=3.9e-26  Score=241.70  Aligned_cols=263  Identities=20%  Similarity=0.239  Sum_probs=169.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||||||+||..|++.|++|+|||+.+.+||...+.                                   ++
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~-----------------------------------IP  581 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNI-----------------------------------IP  581 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeec-----------------------------------cc
Confidence            4799999999999999999999999999999999999987652                                   00


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                      ++                ....++.++..+.+..+|++  +++++..         ..+  +...    ....||+||||
T Consensus       582 ~~----------------rlp~e~l~~~ie~l~~~GVe--~~~g~~~---------d~~--ve~l----~~~gYDaVIIA  628 (1012)
T TIGR03315       582 EF----------------RISAESIQKDIELVKFHGVE--FKYGCSP---------DLT--VAEL----KNQGYKYVILA  628 (1012)
T ss_pred             cc----------------CCCHHHHHHHHHHHHhcCcE--EEEeccc---------ceE--hhhh----hcccccEEEEC
Confidence            00                00134455555666667776  6665321         011  1111    13569999999


Q ss_pred             cCCCCCCccCCCCCCCCCCccEEEeeec----CC--CCCCCCCEEEEEecCCcHHHHHHHHhcc-C-CEEEEEEecCCc-
Q 013303          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNY----RI--PNPFQDQVVILIGHYASGLDIKRDLAGF-A-KEVHIASRSVAD-  232 (446)
Q Consensus       162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~----~~--~~~~~~k~VvVVG~G~sg~eia~~l~~~-~-~~V~l~~r~~~~-  232 (446)
                      ||. ..+..+.++|...   .++...++    ..  .....+|+|+|||+|.+|+|+|..+.+. | ++|+++.|+... 
T Consensus       629 TGA-~~~~~l~I~G~~~---~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~  704 (1012)
T TIGR03315       629 IGA-WKHGPLRLEGGGE---RVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRY  704 (1012)
T ss_pred             CCC-CCCCCCCcCCCCc---ceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCccc
Confidence            995 2345556777532   22222221    11  1224689999999999999999998876 5 589999987631 


Q ss_pred             -----cccccCCCCC-CeeeccceeEEccCCcE-----------------EecCCc--EEeecEEEEecCccCCCCCCCC
Q 013303          233 -----ETHEKQPGYD-NMWLHSMVERANEDGTV-----------------VFRNGR--VVSADVIMHCTGYKYNYPFLET  287 (446)
Q Consensus       233 -----~~~~~~~~~~-~v~~~~~v~~i~~~~~v-----------------~~~dG~--~~~~D~vi~atG~~~~~~~l~~  287 (446)
                           +.+....+.+ .+.....+.++. ++.+                 ...+|+  ++++|.||+|+|..|+..++..
T Consensus       705 Mpa~~eEl~~aleeGVe~~~~~~p~~I~-~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle~  783 (1012)
T TIGR03315       705 MPASREELEEALEDGVDFKELLSPESFE-DGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQK  783 (1012)
T ss_pred             cccCHHHHHHHHHcCCEEEeCCceEEEE-CCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHHHHh
Confidence                 1111111111 233333334443 1211                 122444  5789999999999999877643


Q ss_pred             C-------CeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCCCCC
Q 013303          288 N-------GIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGRIVL  346 (446)
Q Consensus       288 ~-------g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~~~l  346 (446)
                      .       |.+.+|+.        .+. ++.|+||++|++.. ......+..||+.+|..+.++...
T Consensus       784 ~GL~ld~~G~I~VD~~--------~~~-Ts~pgVFAaGD~a~GP~tVv~AIaqGr~AA~nIl~~~~~  841 (1012)
T TIGR03315       784 NGIPLDEYGWPVVNQA--------TGE-TNITNVFVIGDANRGPATIVEAIADGRKAANAILSREGL  841 (1012)
T ss_pred             cCcccCCCCCEEeCCC--------CCc-cCCCCEEEEeCcCCCccHHHHHHHHHHHHHHHHhccccC
Confidence            3       34444443        122 45899999998863 344567889999999999876543

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=99.94  E-value=8.5e-26  Score=235.38  Aligned_cols=268  Identities=22%  Similarity=0.286  Sum_probs=170.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+||||||+||++|..|++.|++|+|||+.+.+||.+.+.                                   + 
T Consensus       193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~g-----------------------------------i-  236 (652)
T PRK12814        193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYG-----------------------------------I-  236 (652)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeec-----------------------------------C-
Confidence            4799999999999999999999999999999999999998762                                   0 


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                     +.|....++.++..+.+.++|+.  +++++.|. +        .++..+.     ...||+||+|
T Consensus       237 ---------------p~~~~~~~~~~~~~~~l~~~Gv~--i~~~~~v~-~--------dv~~~~~-----~~~~DaVilA  285 (652)
T PRK12814        237 ---------------PRFRLPESVIDADIAPLRAMGAE--FRFNTVFG-R--------DITLEEL-----QKEFDAVLLA  285 (652)
T ss_pred             ---------------CCCCCCHHHHHHHHHHHHHcCCE--EEeCCccc-C--------ccCHHHH-----HhhcCEEEEE
Confidence                           01111245566666677778877  77776541 1        1111111     2349999999


Q ss_pred             cCCCCCCccCCCCCCCCCCccEEEeeecC-----CCCCCCCCEEEEEecCCcHHHHHHHHhccCC-EEEEEEecCCc---
Q 013303          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYR-----IPNPFQDQVVILIGHYASGLDIKRDLAGFAK-EVHIASRSVAD---  232 (446)
Q Consensus       162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~-----~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~-~V~l~~r~~~~---  232 (446)
                      ||. ..+..+.+||.+. .+ ++...++.     ......+++|+|||+|.+|+|+|..+.+.|. +|+++.|+...   
T Consensus       286 tGa-~~~~~~~ipG~~~-~g-v~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mp  362 (652)
T PRK12814        286 VGA-QKASKMGIPGEEL-PG-VISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMP  362 (652)
T ss_pred             cCC-CCCCCCCCCCcCc-CC-cEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCC
Confidence            994 2345677888653 23 22222221     1234578999999999999999999998875 69999987631   


Q ss_pred             ---cccccCC-CCCCeeeccceeEEccC-CcE-----Eec---------------CCc--EEeecEEEEecCccCCCCCC
Q 013303          233 ---ETHEKQP-GYDNMWLHSMVERANED-GTV-----VFR---------------NGR--VVSADVIMHCTGYKYNYPFL  285 (446)
Q Consensus       233 ---~~~~~~~-~~~~v~~~~~v~~i~~~-~~v-----~~~---------------dG~--~~~~D~vi~atG~~~~~~~l  285 (446)
                         ..+.... +...+.....+.++..+ +.+     .+.               +|+  ++++|.||+|+|+.|+..++
T Consensus       363 a~~~ei~~a~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll  442 (652)
T PRK12814        363 ANRAEIEEALAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIA  442 (652)
T ss_pred             CCHHHHHHHHHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCcccc
Confidence               1111111 11244444455555421 111     111               233  48899999999999998887


Q ss_pred             CCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCccC-chhHHHHHHHHHHHHHc
Q 013303          286 ETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI-PFPFFELQSKWIASVLS  341 (446)
Q Consensus       286 ~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~-~~~~~~~qa~~~a~~l~  341 (446)
                      ...| +.++.+.........+. ++.|+||++|++..+. ....+..||+.+|.++.
T Consensus       443 ~~~g-l~~~~~G~I~vd~~~~~-Ts~pgVfA~GDv~~g~~~v~~Ai~~G~~AA~~I~  497 (652)
T PRK12814        443 EAAG-IGTSRNGTVKVDPETLQ-TSVAGVFAGGDCVTGADIAINAVEQGKRAAHAID  497 (652)
T ss_pred             cccC-ccccCCCcEeeCCCCCc-CCCCCEEEcCCcCCCchHHHHHHHHHHHHHHHHH
Confidence            5433 22222221111111222 4589999999876433 33566778887777643

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=99.94  E-value=8.5e-26  Score=221.49  Aligned_cols=263  Identities=19%  Similarity=0.235  Sum_probs=175.5

Q ss_pred             eEEEECcChHHHHHHHHHHHC---CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCccc
Q 013303            4 HVAVIGAGAAGLVVGHELLRE---GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (446)
Q Consensus         4 ~V~IIGaG~aGl~aA~~l~~~---g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~   80 (446)
                      +|+|||||+||+.+|+.|+++   +.+|+|||+++..    .+                       ...   .|      
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~----~~-----------------------~~~---~~------   44 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT----PY-----------------------SGM---LP------   44 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC----cc-----------------------cch---hh------
Confidence            589999999999999999643   6899999987632    11                       000   00      


Q ss_pred             CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEE
Q 013303           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV  160 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVv  160 (446)
                       .+.            ....+.+++...+.+++++++++  +.. .+|+.|+...   .+|.+.++.    ++.||+|||
T Consensus        45 -~~~------------~g~~~~~~~~~~~~~~~~~~gv~--~~~-~~v~~id~~~---~~V~~~~g~----~~~yD~Lvi  101 (364)
T TIGR03169        45 -GMI------------AGHYSLDEIRIDLRRLARQAGAR--FVI-AEATGIDPDR---RKVLLANRP----PLSYDVLSL  101 (364)
T ss_pred             -HHH------------heeCCHHHhcccHHHHHHhcCCE--EEE-EEEEEEeccc---CEEEECCCC----cccccEEEE
Confidence             000            00112245555667777777876  554 5899998754   467776653    689999999


Q ss_pred             ccCCCCCCccCCCCCCCCCCccEEEeee----------cCC-CC-CCCCCEEEEEecCCcHHHHHHHHhcc----C--CE
Q 013303          161 CNGHFSVPRLAQVPGIDSWPGKQMHSHN----------YRI-PN-PFQDQVVILIGHYASGLDIKRDLAGF----A--KE  222 (446)
Q Consensus       161 AtG~~s~p~~p~i~G~~~~~g~~~hs~~----------~~~-~~-~~~~k~VvVVG~G~sg~eia~~l~~~----~--~~  222 (446)
                      |||  +.|..|.+||....   +.....          +.. .. ...+++|+|||+|.+|+|+|..|++.    +  .+
T Consensus       102 AtG--~~~~~~~i~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~  176 (364)
T TIGR03169       102 DVG--STTPLSGVEGAADL---AVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQ  176 (364)
T ss_pred             ccC--CCCCCCCCCccccc---ccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCce
Confidence            999  89999999985431   111000          100 00 12457999999999999999999853    3  58


Q ss_pred             EEEEEecCC-----c----ccc-ccCCCC-CCeeeccceeEEccCCcEEecCCcEEeecEEEEecCccCCCCCC------
Q 013303          223 VHIASRSVA-----D----ETH-EKQPGY-DNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFL------  285 (446)
Q Consensus       223 V~l~~r~~~-----~----~~~-~~~~~~-~~v~~~~~v~~i~~~~~v~~~dG~~~~~D~vi~atG~~~~~~~l------  285 (446)
                      |+++ +.+.     .    ..+ +.+.+. -++.....+.++..+ .+.+.+|+++++|.||+|+|.+|+. ++      
T Consensus       177 V~li-~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~-~v~~~~g~~i~~D~vi~a~G~~p~~-~l~~~gl~  253 (364)
T TIGR03169       177 VTLI-AGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPDG-ALILADGRTLPADAILWATGARAPP-WLAESGLP  253 (364)
T ss_pred             EEEE-eCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcCC-eEEeCCCCEEecCEEEEccCCChhh-HHHHcCCC
Confidence            9998 4332     0    011 111122 245566788888654 5889999999999999999999973 33      


Q ss_pred             -CCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCccC------chhHHHHHHHHHHHHHcC
Q 013303          286 -ETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI------PFPFFELQSKWIASVLSG  342 (446)
Q Consensus       286 -~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~------~~~~~~~qa~~~a~~l~g  342 (446)
                       ++.|.+.+|+..+         .++.|+||++|++....      ....+..||+.+|+++..
T Consensus       254 ~~~~g~i~vd~~l~---------~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~  308 (364)
T TIGR03169       254 LDEDGFLRVDPTLQ---------SLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRA  308 (364)
T ss_pred             cCCCCeEEECCccc---------cCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHH
Confidence             3345666766544         12589999999886321      234578899999988854

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=99.93  E-value=3.7e-25  Score=238.77  Aligned_cols=275  Identities=19%  Similarity=0.234  Sum_probs=178.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||||||+||..|++.|++|+|||+.+.+||...+.                                     
T Consensus       430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~g-------------------------------------  472 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYG-------------------------------------  472 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeecc-------------------------------------
Confidence            4799999999999999999999999999999999999987652                                     


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                    .+.|....++.+...+.++++|++  +++++.|.       ..+++  ....   ....||+||||
T Consensus       473 --------------ip~~rl~~e~~~~~~~~l~~~Gv~--~~~~~~vg-------~~~~~--~~l~---~~~~yDaViIA  524 (1006)
T PRK12775        473 --------------IPSFRLPRDIIDREVQRLVDIGVK--IETNKVIG-------KTFTV--PQLM---NDKGFDAVFLG  524 (1006)
T ss_pred             --------------CCccCCCHHHHHHHHHHHHHCCCE--EEeCCccC-------CccCH--HHHh---hccCCCEEEEe
Confidence                          111112256777777778888987  88776441       11111  1110   02459999999


Q ss_pred             cCCCCCCccCCCCCCCCCCccEEEeeec--------------CCCCCCCCCEEEEEecCCcHHHHHHHHhccCC-EEEEE
Q 013303          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNY--------------RIPNPFQDQVVILIGHYASGLDIKRDLAGFAK-EVHIA  226 (446)
Q Consensus       162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~--------------~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~-~V~l~  226 (446)
                      ||. ..|+.|+|||.+. . .+++..+|              .+.....||+|+|||+|.+|+|+|..+.+.|. .|+++
T Consensus       525 TGa-~~pr~l~IpG~~l-~-gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv  601 (1006)
T PRK12775        525 VGA-GAPTFLGIPGEFA-G-QVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCV  601 (1006)
T ss_pred             cCC-CCCCCCCCCCcCC-C-CcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEE
Confidence            994 2588899999653 2 23443322              11223578999999999999999999998876 58888


Q ss_pred             EecCCccc------cccCCCCC-CeeeccceeEEcc--CCc---EEec-----------------CCc--EEeecEEEEe
Q 013303          227 SRSVADET------HEKQPGYD-NMWLHSMVERANE--DGT---VVFR-----------------NGR--VVSADVIMHC  275 (446)
Q Consensus       227 ~r~~~~~~------~~~~~~~~-~v~~~~~v~~i~~--~~~---v~~~-----------------dG~--~~~~D~vi~a  275 (446)
                      .|+...+.      +..+.+.+ ++.....+.++..  ++.   |.+.                 +|+  ++++|.||+|
T Consensus       602 ~rr~~~em~a~~~e~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~A  681 (1006)
T PRK12775        602 YRRSEAEAPARIEEIRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYA  681 (1006)
T ss_pred             eecCcccCCCCHHHHHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEEC
Confidence            88654111      11111222 4444455556532  232   2221                 232  5899999999


Q ss_pred             cCccCCCCCCC--------CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCccC-chhHHHHHHHHHHHH----HcC
Q 013303          276 TGYKYNYPFLE--------TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI-PFPFFELQSKWIASV----LSG  342 (446)
Q Consensus       276 tG~~~~~~~l~--------~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~-~~~~~~~qa~~~a~~----l~g  342 (446)
                      +|+.|+..++.        ..|.|.+|+...    ...+. ++.|+||++|++..+. ....+..+++.+|..    |.+
T Consensus       682 iG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v----~~~~~-Ts~pgVFAaGDv~~G~~~vv~Ai~~Gr~AA~~I~~~L~~  756 (1006)
T PRK12775        682 LGTKANPIITQSTPGLALNKWGNIAADDGKL----ESTQS-TNLPGVFAGGDIVTGGATVILAMGAGRRAARSIATYLRL  756 (1006)
T ss_pred             CCcCCChhhhhccCCcccCCCCcEEeCCCcc----ccCcC-CCCCCEEEecCcCCCccHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999976543        234455553110    11223 4589999999986443 345677788877766    445


Q ss_pred             CCCCCCH
Q 013303          343 RIVLPSQ  349 (446)
Q Consensus       343 ~~~lp~~  349 (446)
                      ....|..
T Consensus       757 ~~~~~~~  763 (1006)
T PRK12775        757 GKKWPIT  763 (1006)
T ss_pred             CCCcCCC
Confidence            4444433

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=99.93  E-value=5.4e-25  Score=221.98  Aligned_cols=267  Identities=20%  Similarity=0.287  Sum_probs=169.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+||||||||+++|..|++.|++|+|||+.+.+||.+.+.                                   + 
T Consensus       143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g-----------------------------------i-  186 (471)
T PRK12810        143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYG-----------------------------------I-  186 (471)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeec-----------------------------------C-
Confidence            4799999999999999999999999999999999999988752                                   0 


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                     +.|....++.+...+.+.++|++  +++++.|.. +        ++...     ....||+||+|
T Consensus       187 ---------------p~~~~~~~~~~~~~~~~~~~gv~--~~~~~~v~~-~--------~~~~~-----~~~~~d~vvlA  235 (471)
T PRK12810        187 ---------------PDFKLEKEVIDRRIELMEAEGIE--FRTNVEVGK-D--------ITAEE-----LLAEYDAVFLG  235 (471)
T ss_pred             ---------------CcccCCHHHHHHHHHHHHhCCcE--EEeCCEECC-c--------CCHHH-----HHhhCCEEEEe
Confidence                           01111134566666677778887  888876531 1        00000     12469999999


Q ss_pred             cCCCCCCccCCCCCCCCCCccEEEeeec-------------CCCCCCCCCEEEEEecCCcHHHHHHHHhccCC-EEEEEE
Q 013303          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNY-------------RIPNPFQDQVVILIGHYASGLDIKRDLAGFAK-EVHIAS  227 (446)
Q Consensus       162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~-------------~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~-~V~l~~  227 (446)
                      ||. ..|+.+.+||.+. .| +.+..++             .......+++|+|||+|.+|+|+|..+.+.+. +|++..
T Consensus       236 tGa-~~~~~l~ipG~~~-~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~  312 (471)
T PRK12810        236 TGA-YKPRDLGIPGRDL-DG-VHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRD  312 (471)
T ss_pred             cCC-CCCCcCCCCCccC-CC-cEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEcc
Confidence            994 2377788888653 22 2221111             11124578999999999999999998877764 788665


Q ss_pred             ecCC--cc--------------ccccCCCCC-CeeeccceeEEcc-CCcE---Ee-----cCC---------cEEeecEE
Q 013303          228 RSVA--DE--------------THEKQPGYD-NMWLHSMVERANE-DGTV---VF-----RNG---------RVVSADVI  272 (446)
Q Consensus       228 r~~~--~~--------------~~~~~~~~~-~v~~~~~v~~i~~-~~~v---~~-----~dG---------~~~~~D~v  272 (446)
                      +...  ..              .+..+.+.+ .+.....+.++.. ++.|   .+     .+|         .++++|.|
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~V  392 (471)
T PRK12810        313 IMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLV  392 (471)
T ss_pred             ccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEE
Confidence            4432  11              111111222 4555666777753 3332   22     232         45889999


Q ss_pred             EEecCccCCCC-CCCCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCccC-chhHHHHHHHHHHHHH
Q 013303          273 MHCTGYKYNYP-FLETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI-PFPFFELQSKWIASVL  340 (446)
Q Consensus       273 i~atG~~~~~~-~l~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~-~~~~~~~qa~~~a~~l  340 (446)
                      |+|+|+.|+.. ++...+ +.++++......+..+. ++.|+||++|++..+. ....+..||+.+|..+
T Consensus       393 I~A~G~~p~~~~l~~~~g-l~~~~~g~i~vd~~~~~-Ts~~gVfa~GD~~~g~~~~~~Av~~G~~AA~~i  460 (471)
T PRK12810        393 LLAMGFTGPEAGLLAQFG-VELDERGRVAAPDNAYQ-TSNPKVFAAGDMRRGQSLVVWAIAEGRQAARAI  460 (471)
T ss_pred             EECcCcCCCchhhccccC-cccCCCCCEEeCCCccc-CCCCCEEEccccCCCchhHHHHHHHHHHHHHHH
Confidence            99999999854 544322 33332221111101122 4589999999887543 3455677888877665

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.93  E-value=2.9e-24  Score=224.87  Aligned_cols=269  Identities=22%  Similarity=0.282  Sum_probs=170.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||||||++|..|++.|++|+|||+.+.+||.+.+..                                    
T Consensus       327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gi------------------------------------  370 (654)
T PRK12769        327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGI------------------------------------  370 (654)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecC------------------------------------
Confidence            47999999999999999999999999999999999999987620                                    


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                     +.|....++.+...+.++++|++  +++++.|..         .++...     ....||+||+|
T Consensus       371 ---------------p~~~l~~~~~~~~~~~~~~~Gv~--~~~~~~v~~---------~i~~~~-----~~~~~DavilA  419 (654)
T PRK12769        371 ---------------PAFKLDKSLLARRREIFSAMGIE--FELNCEVGK---------DISLES-----LLEDYDAVFVG  419 (654)
T ss_pred             ---------------CCccCCHHHHHHHHHHHHHCCeE--EECCCEeCC---------cCCHHH-----HHhcCCEEEEe
Confidence                           00111145566666777788887  888876621         011111     12369999999


Q ss_pred             cCCCCCCccCCCCCCCCCCccEEEeee-----------cC---C-C-CCCCCCEEEEEecCCcHHHHHHHHhccCC-EEE
Q 013303          162 NGHFSVPRLAQVPGIDSWPGKQMHSHN-----------YR---I-P-NPFQDQVVILIGHYASGLDIKRDLAGFAK-EVH  224 (446)
Q Consensus       162 tG~~s~p~~p~i~G~~~~~g~~~hs~~-----------~~---~-~-~~~~~k~VvVVG~G~sg~eia~~l~~~~~-~V~  224 (446)
                      ||+ ..+..+.+||.+. .| ++....           +.   . + ..+.+|+|+|||+|.+|+|+|..+.+.+. +|+
T Consensus       420 tGa-~~~~~l~i~g~~~-~G-v~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt  496 (654)
T PRK12769        420 VGT-YRSMKAGLPNEDA-PG-VYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVT  496 (654)
T ss_pred             CCC-CCCCCCCCCCCCC-CC-eEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEE
Confidence            996 3344567777653 22 111100           00   0 1 12578999999999999999998888875 799


Q ss_pred             EEEecCCc------cccccCCCCC-CeeeccceeEEcc--CCc---EEe---------cC---------Cc--EEeecEE
Q 013303          225 IASRSVAD------ETHEKQPGYD-NMWLHSMVERANE--DGT---VVF---------RN---------GR--VVSADVI  272 (446)
Q Consensus       225 l~~r~~~~------~~~~~~~~~~-~v~~~~~v~~i~~--~~~---v~~---------~d---------G~--~~~~D~v  272 (446)
                      +++|+...      ..+..+.+.+ .+.....+.++..  ++.   |.+         .+         |+  ++++|.|
T Consensus       497 ~i~~~~~~~~~~~~~e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~V  576 (654)
T PRK12769        497 CAYRRDEANMPGSKKEVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAV  576 (654)
T ss_pred             EeEecCCCCCCCCHHHHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEE
Confidence            99987541      1112222222 4444555666642  232   232         12         22  4889999


Q ss_pred             EEecCccCCC-CCCCCCCeeeeCCCCcccccc--c-ccCCCCCCCeEEecCCCccC-chhHHHHHHHHHHHHHcC
Q 013303          273 MHCTGYKYNY-PFLETNGIVTVDDNRVGPLYK--H-VFPPVLAPGLSFVGIPQKVI-PFPFFELQSKWIASVLSG  342 (446)
Q Consensus       273 i~atG~~~~~-~~l~~~g~i~~~~~~~~~l~~--~-~~~~~~~p~l~~iG~~~~~~-~~~~~~~qa~~~a~~l~g  342 (446)
                      |+|+|+.|+. .++...+ +.++.+.......  + .+. ++.|+||++|+...+. ....+..||+.+|..+..
T Consensus       577 i~AiG~~p~~~~~~~~~g-l~~~~~G~i~vd~~~~~~~~-Ts~~gVfAaGD~~~g~~~vv~Ai~~Gr~AA~~I~~  649 (654)
T PRK12769        577 IMAFGFNPHGMPWLESHG-VTVDKWGRIIADVESQYRYQ-TSNPKIFAGGDAVRGADLVVTAMAEGRHAAQGIID  649 (654)
T ss_pred             EECccCCCCccccccccC-CcCCCCCCEEeCCCcccCcc-cCCCCEEEcCCcCCCCcHHHHHHHHHHHHHHHHHH
Confidence            9999999984 4544322 3333222111100  0 122 5589999999986543 346678899998887753

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=99.93  E-value=2.3e-24  Score=216.70  Aligned_cols=263  Identities=22%  Similarity=0.291  Sum_probs=172.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+||||||+||++|..|++.|++|++||+.+.+||.+.+.                                   + 
T Consensus       141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~g-----------------------------------i-  184 (467)
T TIGR01318       141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFG-----------------------------------I-  184 (467)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeec-----------------------------------C-
Confidence            4789999999999999999999999999999999999988752                                   0 


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                     +.|....++.++..+.++++|+.  ++++++|..-         +...+     ....||.||+|
T Consensus       185 ---------------p~~~~~~~~~~~~~~~~~~~Gv~--~~~~~~v~~~---------~~~~~-----~~~~~D~vilA  233 (467)
T TIGR01318       185 ---------------PSFKLDKAVLSRRREIFTAMGIE--FHLNCEVGRD---------ISLDD-----LLEDYDAVFLG  233 (467)
T ss_pred             ---------------ccccCCHHHHHHHHHHHHHCCCE--EECCCEeCCc---------cCHHH-----HHhcCCEEEEE
Confidence                           00111146677777888888987  8888876320         11111     12469999999


Q ss_pred             cCCCCCC-ccCCCCCCCCCCccEEEeee-----------cC-----CCCCCCCCEEEEEecCCcHHHHHHHHhccC-CEE
Q 013303          162 NGHFSVP-RLAQVPGIDSWPGKQMHSHN-----------YR-----IPNPFQDQVVILIGHYASGLDIKRDLAGFA-KEV  223 (446)
Q Consensus       162 tG~~s~p-~~p~i~G~~~~~g~~~hs~~-----------~~-----~~~~~~~k~VvVVG~G~sg~eia~~l~~~~-~~V  223 (446)
                      ||  +.+ ..+.+||.+. +| +.+..+           ..     ....+.+++|+|||+|.+|+|.|..+.+.| ++|
T Consensus       234 tG--a~~~~~~~i~g~~~-~g-V~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~V  309 (467)
T TIGR01318       234 VG--TYRSMRGGLPGEDA-PG-VLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASV  309 (467)
T ss_pred             eC--CCCCCcCCCCCcCC-CC-cEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeE
Confidence            99  544 3457888654 22 222110           00     011246899999999999999999998887 579


Q ss_pred             EEEEecCCc------cccccCCCCC-CeeeccceeEEcc--CCc---EEec---------C---------C--cEEeecE
Q 013303          224 HIASRSVAD------ETHEKQPGYD-NMWLHSMVERANE--DGT---VVFR---------N---------G--RVVSADV  271 (446)
Q Consensus       224 ~l~~r~~~~------~~~~~~~~~~-~v~~~~~v~~i~~--~~~---v~~~---------d---------G--~~~~~D~  271 (446)
                      ++++|++..      ..+..+.+.+ .+.....+.++..  ++.   |.+.         +         |  .++++|.
T Consensus       310 tvv~r~~~~~~~~~~~e~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~  389 (467)
T TIGR01318       310 TCAYRRDEANMPGSRREVANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADV  389 (467)
T ss_pred             EEEEecCcccCCCCHHHHHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCE
Confidence            999987541      1112222222 4455556666642  222   2221         1         2  2588999


Q ss_pred             EEEecCccCCC-CCCCC-------CCeeeeCCCCcccccccccCCCCCCCeEEecCCCccCc-hhHHHHHHHHHHHHHc
Q 013303          272 IMHCTGYKYNY-PFLET-------NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVIP-FPFFELQSKWIASVLS  341 (446)
Q Consensus       272 vi~atG~~~~~-~~l~~-------~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~~-~~~~~~qa~~~a~~l~  341 (446)
                      ||+++|+.|+. +++..       .|.+.+|+     .|+..+. ++.|+||++|++..+.. ...+..||+.+|.++.
T Consensus       390 Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~-----~~~~~~~-T~~~gVfa~GD~~~~~~~~~~Ai~~G~~aA~~i~  462 (467)
T TIGR01318       390 VIMAFGFQPHAMPWLAGHGITLDSWGRIITGD-----VSYLPYQ-TTNPKIFAGGDAVRGADLVVTAVAEGRQAAQGIL  462 (467)
T ss_pred             EEECCcCCCCccccccccCccCCCCCCEEeCC-----ccccCcc-CCCCCEEEECCcCCCccHHHHHHHHHHHHHHHHH
Confidence            99999999984 45433       23344442     1112233 34899999998865433 3567889999988775

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK13984 putative oxidoreductase; Provisional

Probab=99.92  E-value=2.7e-24  Score=223.83  Aligned_cols=260  Identities=23%  Similarity=0.302  Sum_probs=168.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||++|+++|..|++.|++|+|||+.+.+||.+.+.-                                    
T Consensus       283 ~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i------------------------------------  326 (604)
T PRK13984        283 NKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGI------------------------------------  326 (604)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecC------------------------------------
Confidence            46899999999999999999999999999999999999877520                                    


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                     +.+...+++.+...+.++++|+.  +++++.|..-         +..+.     ....||+||+|
T Consensus       327 ---------------~~~~~~~~~~~~~~~~~~~~gv~--~~~~~~v~~~---------~~~~~-----~~~~yD~vilA  375 (604)
T PRK13984        327 ---------------PSYRLPDEALDKDIAFIEALGVK--IHLNTRVGKD---------IPLEE-----LREKHDAVFLS  375 (604)
T ss_pred             ---------------CcccCCHHHHHHHHHHHHHCCcE--EECCCEeCCc---------CCHHH-----HHhcCCEEEEE
Confidence                           00011134455555667778877  8888777320         01111     13469999999


Q ss_pred             cCCCCCCccCCCCCCCCCCccEEEeeecC---------CC-CCCCCCEEEEEecCCcHHHHHHHHhccC------CEEEE
Q 013303          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYR---------IP-NPFQDQVVILIGHYASGLDIKRDLAGFA------KEVHI  225 (446)
Q Consensus       162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~---------~~-~~~~~k~VvVVG~G~sg~eia~~l~~~~------~~V~l  225 (446)
                      ||. ..|+.+++||.+. .+ +.+..++.         .. ....+++|+|||||.+|+|+|..+++.+      .+|++
T Consensus       376 tGa-~~~r~l~i~G~~~-~g-v~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v  452 (604)
T PRK13984        376 TGF-TLGRSTRIPGTDH-PD-VIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKV  452 (604)
T ss_pred             cCc-CCCccCCCCCcCC-cC-eEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEE
Confidence            994 3467888999753 12 22222211         11 1234799999999999999999998774      36888


Q ss_pred             EEec-CCc------cccccCCCCC-CeeeccceeEEcc-CCc---EEec-------------------CCcEEeecEEEE
Q 013303          226 ASRS-VAD------ETHEKQPGYD-NMWLHSMVERANE-DGT---VVFR-------------------NGRVVSADVIMH  274 (446)
Q Consensus       226 ~~r~-~~~------~~~~~~~~~~-~v~~~~~v~~i~~-~~~---v~~~-------------------dG~~~~~D~vi~  274 (446)
                      +... ...      ..+..+.+.+ .+.....+.++.. ++.   |.+.                   ++.++++|.||+
T Consensus       453 ~~~~r~~~~~~~~~~e~~~~~~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~  532 (604)
T PRK13984        453 TSLERTFEEMPADMEEIEEGLEEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVE  532 (604)
T ss_pred             eccccCcccCCCCHHHHHHHHHcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEE
Confidence            7432 110      0111111111 3333334444432 121   2221                   123589999999


Q ss_pred             ecCccCCCCCCCC---------CCeeeeCCCCcccccccccCCCCCCCeEEecCCCccCchhHHHHHHHHHHHHHc
Q 013303          275 CTGYKYNYPFLET---------NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLS  341 (446)
Q Consensus       275 atG~~~~~~~l~~---------~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~~~~~~~~qa~~~a~~l~  341 (446)
                      |+|+.|+..+|..         .|.|.+|++.+          ++.|+||++|++..+.....+..+|+.+|..+.
T Consensus       533 aiG~~p~~~~l~~~~~~~l~~~~G~i~vd~~~~----------Ts~~gVfAaGD~~~~~~~v~Ai~~G~~AA~~I~  598 (604)
T PRK13984        533 AIGQAPDYSYLPEELKSKLEFVRGRILTNEYGQ----------TSIPWLFAGGDIVHGPDIIHGVADGYWAAEGID  598 (604)
T ss_pred             eeCCCCChhhhhhhhccCccccCCeEEeCCCCc----------cCCCCEEEecCcCCchHHHHHHHHHHHHHHHHH
Confidence            9999999877642         24455665544          569999999998766555667788888887764

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=3.8e-24  Score=194.07  Aligned_cols=260  Identities=21%  Similarity=0.239  Sum_probs=198.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .+||+||||||||.+||.+.+|.|++.-++-  +++||+-..+-..+                              .|-
T Consensus       211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQvldT~~IE------------------------------NfI  258 (520)
T COG3634         211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQVLDTMGIE------------------------------NFI  258 (520)
T ss_pred             CceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCeeccccchh------------------------------hee
Confidence            4799999999999999999999999876653  35888876542111                              011


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCC--CceEEEEEeCCCceEEEEEcEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES--NKWKVKSRKKDDVVEEETFDAVV  159 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~--~~~~v~~~~~~~~~~~~~~d~VV  159 (446)
                      .              ..+..+.++...|++.+++|+++  +.--.+.+.+.+...  +-..|++.++.    .+.++.||
T Consensus       259 s--------------v~~teGpkl~~ale~Hv~~Y~vD--imn~qra~~l~~a~~~~~l~ev~l~nGa----vLkaktvI  318 (520)
T COG3634         259 S--------------VPETEGPKLAAALEAHVKQYDVD--VMNLQRASKLEPAAVEGGLIEVELANGA----VLKARTVI  318 (520)
T ss_pred             c--------------cccccchHHHHHHHHHHhhcCch--hhhhhhhhcceecCCCCccEEEEecCCc----eeccceEE
Confidence            1              12234578899999999999988  666667777777532  56788888876    78999999


Q ss_pred             EccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC---cccc-
Q 013303          160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA---DETH-  235 (446)
Q Consensus       160 vAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~---~~~~-  235 (446)
                      +|||  .+-+-..+||.++|..+.+..|..++..-|+||+|.|||||+||+|.|.+|+.....||++.-.+.   +..+ 
T Consensus       319 lstG--ArWRn~nvPGE~e~rnKGVayCPHCDGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLkAD~VLq  396 (520)
T COG3634         319 LATG--ARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELKADAVLQ  396 (520)
T ss_pred             EecC--cchhcCCCCchHHHhhCCeeeCCCCCCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhhhHHHHH
Confidence            9999  777778899999998888888888999999999999999999999999999999999999987765   1111 


Q ss_pred             ccCCCCC--CeeeccceeEEccCCc----EEec---CCcE--EeecEEEEecCccCCCCCCC------CCCeeeeCCCCc
Q 013303          236 EKQPGYD--NMWLHSMVERANEDGT----VVFR---NGRV--VSADVIMHCTGYKYNYPFLE------TNGIVTVDDNRV  298 (446)
Q Consensus       236 ~~~~~~~--~v~~~~~v~~i~~~~~----v~~~---dG~~--~~~D~vi~atG~~~~~~~l~------~~g~i~~~~~~~  298 (446)
                      +++....  .+..+..-+++.+++.    +...   +|+.  ++-+-|++-.|..||+.||.      ..|-|.+|....
T Consensus       397 ~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg~vel~~rGEIivD~~g~  476 (520)
T COG3634         397 DKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGAVELNRRGEIIVDARGE  476 (520)
T ss_pred             HHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCceeEEEeeeeEEEEecccChhHhhchhhcCcCccEEEecCCC
Confidence            2233333  4555667778877743    3443   3443  66788999999999999974      456677777766


Q ss_pred             ccccccccCCCCCCCeEEecCCCccCc
Q 013303          299 GPLYKHVFPPVLAPGLSFVGIPQKVIP  325 (446)
Q Consensus       299 ~~l~~~~~~~~~~p~l~~iG~~~~~~~  325 (446)
                                ++.|++|+.|++...+.
T Consensus       477 ----------TsvpGvFAAGD~T~~~y  493 (520)
T COG3634         477 ----------TNVPGVFAAGDCTTVPY  493 (520)
T ss_pred             ----------cCCCceeecCcccCCcc
Confidence                      67999999998875543

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=99.92  E-value=5.9e-26  Score=217.82  Aligned_cols=216  Identities=22%  Similarity=0.210  Sum_probs=132.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCC-CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCccc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g-~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~   80 (446)
                      .+|+++||.||++|+.|..|.+.+ .++..||+.+  .-.|+..--        .|+..+..+.+-+-.....|..-++|
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~--~f~Wh~gml--------l~~~~~q~~fl~Dlvt~~~P~s~~sf   71 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRP--SFSWHPGML--------LPGARMQVSFLKDLVTLRDPTSPFSF   71 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-S--S--TTGGG----------SS-B-SS-TTSSSSTTT-TTSTTSH
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCC--CCCcCCccC--------CCCCccccccccccCcCcCCCCcccH
Confidence            469999999999999999999876 8999999866  345654210        01111111222222223344444444


Q ss_pred             CCCCCCcCC-CCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCC---ceEEEEEeCCCceEEEEEc
Q 013303           81 QAYPFVARN-YEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN---KWKVKSRKKDDVVEEETFD  156 (446)
Q Consensus        81 ~d~~~~~~~-~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~---~~~v~~~~~~~~~~~~~~d  156 (446)
                      ..|-..... .+.......+|++.++.+|+++.+++++..  ++++++|++|++..++   .|+|++.+.++...++.++
T Consensus        72 lnYL~~~~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~--v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar  149 (341)
T PF13434_consen   72 LNYLHEHGRLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQ--VRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRAR  149 (341)
T ss_dssp             HHHHHHTT-HHHHHHH--SS-BHHHHHHHHHHHHCCGTTT--EEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEES
T ss_pred             HHHHHHcCChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCc--eEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeC
Confidence            332111100 000001346789999999999999999855  9999999999988733   4999998766667799999


Q ss_pred             EEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCC--CCCCCCEEEEEecCCcHHHHHHHHhccCC--EEEEEEecCC
Q 013303          157 AVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP--NPFQDQVVILIGHYASGLDIKRDLAGFAK--EVHIASRSVA  231 (446)
Q Consensus       157 ~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~--~~~~~k~VvVVG~G~sg~eia~~l~~~~~--~V~l~~r~~~  231 (446)
                      .||+|||  ..|.+|..-........++|+.+|...  ....+++|+|||||.||.|++..|.+.+.  +|+|+.|++.
T Consensus       150 ~vVla~G--~~P~iP~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~  226 (341)
T PF13434_consen  150 NVVLATG--GQPRIPEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPG  226 (341)
T ss_dssp             EEEE------EE---GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS
T ss_pred             eEEECcC--CCCCCCcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCc
Confidence            9999999  889998643321123679999987543  25678999999999999999999998764  8999999875

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=99.92  E-value=1.2e-23  Score=228.40  Aligned_cols=279  Identities=16%  Similarity=0.166  Sum_probs=184.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .+||+|||||||||+||..|++.|++|+|||+.+.+||++.....                                   
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~-----------------------------------  207 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAE-----------------------------------  207 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeecccc-----------------------------------
Confidence            368999999999999999999999999999999999998865210                                   


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCceEEEE-E-------eC-C-Cce
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKS-R-------KK-D-DVV  150 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~v~~-~-------~~-~-~~~  150 (446)
                      ..+             . .+..++.+.+.+.++.+ ++.  ++.+++|..+.... ....+.. .       .+ . +..
T Consensus       208 ~~~-------------g-~~~~~~~~~~~~~l~~~~~v~--v~~~t~V~~i~~~~-~v~~v~~~~~~~~~~~~~~~~~~~  270 (985)
T TIGR01372       208 TID-------------G-KPAADWAAATVAELTAMPEVT--LLPRTTAFGYYDHN-TVGALERVTDHLDAPPKGVPRERL  270 (985)
T ss_pred             ccC-------------C-ccHHHHHHHHHHHHhcCCCcE--EEcCCEEEEEecCC-eEEEEEEeeeccccccCCccccce
Confidence            000             0 11133333333334334 365  78889998875321 0011110 0       00 0 112


Q ss_pred             EEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEe---eec-CCCCCCCCCEEEEEecCCcHHHHHHHHhccCC-EEEE
Q 013303          151 EEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHS---HNY-RIPNPFQDQVVILIGHYASGLDIKRDLAGFAK-EVHI  225 (446)
Q Consensus       151 ~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs---~~~-~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~-~V~l  225 (446)
                      .++.+|.||||||  +.++.|++||.+. +| ++..   ..+ .....+.+++|+|||+|.+|+|+|..|++.|. .|++
T Consensus       271 ~~i~a~~VILATG--a~~r~~pipG~~~-pg-V~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~v  346 (985)
T TIGR01372       271 WRIRAKRVVLATG--AHERPLVFANNDR-PG-VMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAI  346 (985)
T ss_pred             EEEEcCEEEEcCC--CCCcCCCCCCCCC-CC-cEEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEE
Confidence            3689999999999  7889899999754 33 2221   112 12223568999999999999999999999994 5788


Q ss_pred             EEecCC--ccccccCCCCC-CeeeccceeEEccCCc---EEec----CCcEEeecEEEEecCccCCCCCCCCCC-eeeeC
Q 013303          226 ASRSVA--DETHEKQPGYD-NMWLHSMVERANEDGT---VVFR----NGRVVSADVIMHCTGYKYNYPFLETNG-IVTVD  294 (446)
Q Consensus       226 ~~r~~~--~~~~~~~~~~~-~v~~~~~v~~i~~~~~---v~~~----dG~~~~~D~vi~atG~~~~~~~l~~~g-~i~~~  294 (446)
                      +.+.+.  ......+.+.+ .+..+..|.++.+++.   |.+.    +++++++|.|++++|+.|+..++...| .+..+
T Consensus       347 v~~~~~~~~~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~  426 (985)
T TIGR01372       347 IDARADVSPEARAEARELGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWD  426 (985)
T ss_pred             EccCcchhHHHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCCeeec
Confidence            776543  11222232222 5556677888876543   5565    456789999999999999998875543 24444


Q ss_pred             CCCcccccccccCCCCCCCeEEecCCCccCchhHHHHHHHHHHHHHc
Q 013303          295 DNRVGPLYKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLS  341 (446)
Q Consensus       295 ~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~~~~~~~~qa~~~a~~l~  341 (446)
                      +...     ...+.++.|+||++|++........+..+++.++..++
T Consensus       427 ~~~~-----~~~~~t~v~gVyaaGD~~g~~~~~~A~~eG~~Aa~~i~  468 (985)
T TIGR01372       427 AAIA-----AFLPGDAVQGCILAGAANGLFGLAAALADGAAAGAAAA  468 (985)
T ss_pred             cccC-----ceecCCCCCCeEEeeccCCccCHHHHHHHHHHHHHHHH
Confidence            3221     11222447999999988766667778888888887764

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=7.1e-24  Score=191.61  Aligned_cols=311  Identities=19%  Similarity=0.248  Sum_probs=194.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEee---CC-----CcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEK---GE-----QVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNL   73 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~---~~-----~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~   73 (446)
                      .+|++|||||.+||+||++++..|.+|.++|-   .+     .+||+|.+.        ||+|.+.+-..++.-.-....
T Consensus        19 dyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNV--------GCIPKKLMHQAallG~al~da   90 (503)
T KOG4716|consen   19 DYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNV--------GCIPKKLMHQAALLGEALHDA   90 (503)
T ss_pred             CccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeec--------ccccHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999983   21     246777765        899876443333221111111


Q ss_pred             CCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCe-EEEEEEEcCC--CceEEEEEeCCCce
Q 013303           74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHT-EVLNARLVES--NKWKVKSRKKDDVV  150 (446)
Q Consensus        74 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~-~V~~v~~~~~--~~~~v~~~~~~~~~  150 (446)
                      .       .|-|.-.      +...-+.+..+.+-+++.+...+---++.++. +|.-++.-..  +..++...+..++.
T Consensus        91 ~-------kyGW~~~------e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~  157 (503)
T KOG4716|consen   91 R-------KYGWNVD------EQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKE  157 (503)
T ss_pred             H-------hhCCCCc------cccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCce
Confidence            1       1223221      12334556777777777777655432233322 2333321111  45667666666667


Q ss_pred             EEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          151 EEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       151 ~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      ..++++.+|||||  .+|+.|+|||..++   .+.|.+....+ +.+.+-+|||+|..|+|+|..|+..|-.|++..|+-
T Consensus       158 ~~~ta~~fvIatG--~RPrYp~IpG~~Ey---~ITSDDlFsl~-~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI  231 (503)
T KOG4716|consen  158 RFLTAENFVIATG--LRPRYPDIPGAKEY---GITSDDLFSLP-YEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSI  231 (503)
T ss_pred             EEeecceEEEEec--CCCCCCCCCCceee---eeccccccccc-CCCCceEEEccceeeeehhhhHhhcCCCcEEEEEEe
Confidence            7899999999999  89999999997663   45666554443 344567789999999999999999999999999987


Q ss_pred             C----cccc-----ccCCCCC-Ceeec---cceeEEccCCc--EEec---CCc--EEeecEEEEecCccCCCCCCC--CC
Q 013303          231 A----DETH-----EKQPGYD-NMWLH---SMVERANEDGT--VVFR---NGR--VVSADVIMHCTGYKYNYPFLE--TN  288 (446)
Q Consensus       231 ~----~~~~-----~~~~~~~-~v~~~---~~v~~i~~~~~--v~~~---dG~--~~~~D~vi~atG~~~~~~~l~--~~  288 (446)
                      .    +..+     +.+..++ .+..+   .+|+.+.. ++  |...   .++  +.++|.|++|.|+.+...-|+  .-
T Consensus       232 ~LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~-g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~  310 (503)
T KOG4716|consen  232 LLRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDD-GKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNA  310 (503)
T ss_pred             ecccccHHHHHHHHHHHHHhCCceeecccceeeeeccC-CcEEEEeecccccccccchhhhhhhhhccccchhhcCCCcc
Confidence            5    1111     1111222 22222   24555533 33  2222   122  245999999999999876543  22


Q ss_pred             CeeeeCCCCcccccccccCCCCCCCeEEecCCC--ccCchhHHHHHHHHHHHHHcC
Q 013303          289 GIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQ--KVIPFPFFELQSKWIASVLSG  342 (446)
Q Consensus       289 g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~--~~~~~~~~~~qa~~~a~~l~g  342 (446)
                      | +.+|+..-. .--.-+..++.|.+|++|+..  ..-..|++-..+|.+|+.|-+
T Consensus       311 G-Vk~n~ks~K-I~v~~~e~t~vp~vyAvGDIl~~kpELTPvAIqsGrlLa~Rlf~  364 (503)
T KOG4716|consen  311 G-VKTNEKSGK-IPVDDEEATNVPYVYAVGDILEDKPELTPVAIQSGRLLARRLFA  364 (503)
T ss_pred             c-eeecccCCc-cccChHHhcCCCceEEecceecCCcccchhhhhhchHHHHHHhc
Confidence            3 444332211 111112225699999999875  334458888888988877643

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.91  E-value=2.3e-23  Score=217.12  Aligned_cols=264  Identities=20%  Similarity=0.258  Sum_probs=170.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+||||||+||++|..|++.|++|+|||+.+.+||.|.+.         .+                          
T Consensus       310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~g---------ip--------------------------  354 (639)
T PRK12809        310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFG---------IP--------------------------  354 (639)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeecc---------CC--------------------------
Confidence            5799999999999999999999999999999999999999873         11                          


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                      .|.+                ..++.+...+.++.+|++  ++++++|..         .+++.+     ....||+||+|
T Consensus       355 ~~~l----------------~~~~~~~~~~~~~~~Gv~--~~~~~~v~~---------~~~~~~-----l~~~~DaV~la  402 (639)
T PRK12809        355 PFKL----------------DKTVLSQRREIFTAMGID--FHLNCEIGR---------DITFSD-----LTSEYDAVFIG  402 (639)
T ss_pred             cccC----------------CHHHHHHHHHHHHHCCeE--EEcCCccCC---------cCCHHH-----HHhcCCEEEEe
Confidence            0111                145666666778888887  888876631         011111     12469999999


Q ss_pred             cCCCCCCccCCCCCCCCCCccEEEee--------e---cCC-----CCCCCCCEEEEEecCCcHHHHHHHHhccC-CEEE
Q 013303          162 NGHFSVPRLAQVPGIDSWPGKQMHSH--------N---YRI-----PNPFQDQVVILIGHYASGLDIKRDLAGFA-KEVH  224 (446)
Q Consensus       162 tG~~s~p~~p~i~G~~~~~g~~~hs~--------~---~~~-----~~~~~~k~VvVVG~G~sg~eia~~l~~~~-~~V~  224 (446)
                      ||++ .+..+.+||.+. .| +++..        +   ...     .....+|+|+|||+|.+|+|.|..+.+.| ++|+
T Consensus       403 tGa~-~~~~~~i~g~~~-~g-v~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt  479 (639)
T PRK12809        403 VGTY-GMMRADLPHEDA-PG-VIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVT  479 (639)
T ss_pred             CCCC-CCCCCCCCCCcc-CC-cEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEE
Confidence            9963 345567888653 23 22210        0   111     12346899999999999999999888777 5899


Q ss_pred             EEEecCCc------cccccCCCC-CCeeeccceeEEcc--CCcE---Ee---c------C---------C--cEEeecEE
Q 013303          225 IASRSVAD------ETHEKQPGY-DNMWLHSMVERANE--DGTV---VF---R------N---------G--RVVSADVI  272 (446)
Q Consensus       225 l~~r~~~~------~~~~~~~~~-~~v~~~~~v~~i~~--~~~v---~~---~------d---------G--~~~~~D~v  272 (446)
                      ++.|+...      ..+....+. ..+.....+.++..  ++.|   .+   .      +         |  .++++|.|
T Consensus       480 ~v~rr~~~~~~~~~~e~~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~V  559 (639)
T PRK12809        480 CAYRRDEVSMPGSRKEVVNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVL  559 (639)
T ss_pred             EeeecCcccCCCCHHHHHHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEE
Confidence            99987541      111111111 24455555666642  2222   11   1      1         2  25789999


Q ss_pred             EEecCccCCC-CCCCCC-------CeeeeCCCCcccccccccCCCCCCCeEEecCCCccCc-hhHHHHHHHHHHHHHc
Q 013303          273 MHCTGYKYNY-PFLETN-------GIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVIP-FPFFELQSKWIASVLS  341 (446)
Q Consensus       273 i~atG~~~~~-~~l~~~-------g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~~-~~~~~~qa~~~a~~l~  341 (446)
                      |+|+|+.|+. .++...       |.+.+|+..     ...+. ++.|+||++|++..+.. ...+..|++.+|+.+.
T Consensus       560 i~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~-----~~~~~-Ts~~gVfA~GD~~~g~~~vv~Ai~~Gr~AA~~i~  631 (639)
T PRK12809        560 IMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVG-----YLPTQ-THLKKVFAGGDAVHGADLVVTAMAAGRQAARDML  631 (639)
T ss_pred             EECcCCCCCccccccccCcccCCCCCEEeCCCc-----ccCcc-cCCCCEEEcCCCCCCchHHHHHHHHHHHHHHHHH
Confidence            9999999964 454432       334443211     11123 45899999999865433 3567788888887765

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=99.91  E-value=3.1e-23  Score=207.51  Aligned_cols=214  Identities=20%  Similarity=0.256  Sum_probs=154.3

Q ss_pred             HHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEE--EcEEEEccCCCCCCccCCCCCCCCCCccEEEee
Q 013303          110 QNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET--FDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSH  187 (446)
Q Consensus       110 ~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~--~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~  187 (446)
                      .++.+++++.  ++++++|+.|++.+   ++|.+.+..+ ..++.  ||+||||||  +.|+.|.+||++.  ..+.+..
T Consensus        51 ~~~~~~~gv~--~~~~~~V~~id~~~---~~v~~~~~~~-~~~~~~~yd~lIiATG--~~p~~~~i~G~~~--~~v~~~~  120 (427)
T TIGR03385        51 EVFIKKRGID--VKTNHEVIEVNDER---QTVVVRNNKT-NETYEESYDYLILSPG--ASPIVPNIEGINL--DIVFTLR  120 (427)
T ss_pred             HHHHHhcCCe--EEecCEEEEEECCC---CEEEEEECCC-CCEEecCCCEEEECCC--CCCCCCCCCCcCC--CCEEEEC
Confidence            4556778887  88899999998754   5555554321 12455  999999999  8999999999752  1233322


Q ss_pred             ecCCC-------CCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc--c----c-----cccCCCC-CCeeecc
Q 013303          188 NYRIP-------NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD--E----T-----HEKQPGY-DNMWLHS  248 (446)
Q Consensus       188 ~~~~~-------~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~--~----~-----~~~~~~~-~~v~~~~  248 (446)
                      ...+.       ..+.+++|+|||+|.+|+|+|..|++.+.+|+++.+.+..  .    .     ...+.+. -++..+.
T Consensus       121 ~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~  200 (427)
T TIGR03385       121 NLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNE  200 (427)
T ss_pred             CHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCC
Confidence            21111       1245789999999999999999999999999999987641  0    0     0111222 2555667


Q ss_pred             ceeEEccCCc-EEecCCcEEeecEEEEecCccCCCCCCC-------CCCeeeeCCCCcccccccccCCCCCCCeEEecCC
Q 013303          249 MVERANEDGT-VVFRNGRVVSADVIMHCTGYKYNYPFLE-------TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIP  320 (446)
Q Consensus       249 ~v~~i~~~~~-v~~~dG~~~~~D~vi~atG~~~~~~~l~-------~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~  320 (446)
                      .|.++..++. +.+.+|+++++|.||+|+|++|+.+++.       +.|.|.+|+..+          ++.|+||++|++
T Consensus       201 ~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~G~i~vd~~~~----------t~~~~Vya~GD~  270 (427)
T TIGR03385       201 EVDSIEGEERVKVFTSGGVYQADMVILATGIKPNSELAKDSGLKLGETGAIWVNEKFQ----------TSVPNIYAAGDV  270 (427)
T ss_pred             EEEEEecCCCEEEEcCCCEEEeCEEEECCCccCCHHHHHhcCcccCCCCCEEECCCcE----------eCCCCEEEeeee
Confidence            8888876655 3778999999999999999999987754       345566666554          458999999987


Q ss_pred             Ccc-----------CchhHHHHHHHHHHHHHcCC
Q 013303          321 QKV-----------IPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       321 ~~~-----------~~~~~~~~qa~~~a~~l~g~  343 (446)
                      ...           ...+.+..||+++|++|.|.
T Consensus       271 ~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g~  304 (427)
T TIGR03385       271 AESHNIITKKPAWVPLAWGANKMGRIAGENIAGN  304 (427)
T ss_pred             EEeeeccCCCceeeechHHHHHHHHHHHHHhcCC
Confidence            632           23567889999999999985

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=99.91  E-value=1.4e-22  Score=204.48  Aligned_cols=267  Identities=22%  Similarity=0.308  Sum_probs=166.2

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d   82 (446)
                      ++|+|||||++|+++|..|++.|++|+|||+.+.+||...+.                                   +  
T Consensus       144 ~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~g-----------------------------------i--  186 (485)
T TIGR01317       144 KKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYG-----------------------------------I--  186 (485)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeecc-----------------------------------C--
Confidence            699999999999999999999999999999999999887652                                   0  


Q ss_pred             CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEcc
Q 013303           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN  162 (446)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAt  162 (446)
                                    +.+....++.....+.++.+|++  +++++.|.. +        ++. +    .....||.||+||
T Consensus       187 --------------p~~~~~~~~~~~~~~~~~~~Gv~--~~~~~~v~~-~--------~~~-~----~~~~~~d~VilAt  236 (485)
T TIGR01317       187 --------------PNMKLDKAIVDRRIDLLSAEGID--FVTNTEIGV-D--------ISA-D----ELKEQFDAVVLAG  236 (485)
T ss_pred             --------------CCccCCHHHHHHHHHHHHhCCCE--EECCCEeCC-c--------cCH-H----HHHhhCCEEEEcc
Confidence                          01111134555555667778887  788877631 1        000 0    0135699999999


Q ss_pred             CCCCCCccCCCCCCCCCCccEEEeeec--------C-------CCCCCCCCEEEEEecCCcHHHHHHHHhccC-CEEEEE
Q 013303          163 GHFSVPRLAQVPGIDSWPGKQMHSHNY--------R-------IPNPFQDQVVILIGHYASGLDIKRDLAGFA-KEVHIA  226 (446)
Q Consensus       163 G~~s~p~~p~i~G~~~~~g~~~hs~~~--------~-------~~~~~~~k~VvVVG~G~sg~eia~~l~~~~-~~V~l~  226 (446)
                      |. ..|..+++||.+. .| +.....+        .       ....+.+|+|+|||+|.+|+|+|..+.+.+ ++|+++
T Consensus       237 Ga-~~~~~l~i~G~~~-~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv  313 (485)
T TIGR01317       237 GA-TKPRDLPIPGREL-KG-IHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQF  313 (485)
T ss_pred             CC-CCCCcCCCCCcCC-CC-cEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEE
Confidence            94 2378888999753 22 1111110        0       011257899999999999999987777665 689999


Q ss_pred             EecCCcc-------c-------------cccCCC-CC--CeeeccceeEEccC--Cc---EEe--------cCC------
Q 013303          227 SRSVADE-------T-------------HEKQPG-YD--NMWLHSMVERANED--GT---VVF--------RNG------  264 (446)
Q Consensus       227 ~r~~~~~-------~-------------~~~~~~-~~--~v~~~~~v~~i~~~--~~---v~~--------~dG------  264 (446)
                      .+.+...       .             ..+... .+  .+.....+.++..+  +.   +.+        ++|      
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~  393 (485)
T TIGR01317       314 EIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVE  393 (485)
T ss_pred             EecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCcccee
Confidence            8765310       0             000000 01  11234445555432  22   221        133      


Q ss_pred             -----cEEeecEEEEecCcc-CCCCCCCCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCccC-chhHHHHHHHHHH
Q 013303          265 -----RVVSADVIMHCTGYK-YNYPFLETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI-PFPFFELQSKWIA  337 (446)
Q Consensus       265 -----~~~~~D~vi~atG~~-~~~~~l~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~-~~~~~~~qa~~~a  337 (446)
                           .++++|.||+|+|.. |+.+++...| +..+++.........+. ++.|+||++|++..+. ....+..|++.+|
T Consensus       394 ~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~g-l~~~~~G~i~~~~~~~~-Ts~~gVfAaGD~~~g~~~~~~Av~~G~~AA  471 (485)
T TIGR01317       394 IPGSEEVFEADLVLLAMGFVGPEQILLDDFG-VKKTRRGNISAGYDDYS-TSIPGVFAAGDCRRGQSLIVWAINEGRKAA  471 (485)
T ss_pred             cCCceEEEECCEEEEccCcCCCccccccccC-cccCCCCCEEecCCCce-ECCCCEEEeeccCCCcHHHHHHHHHHHHHH
Confidence                 258899999999996 8888765443 33232222111112223 4589999999886433 3445677888777


Q ss_pred             HHHc
Q 013303          338 SVLS  341 (446)
Q Consensus       338 ~~l~  341 (446)
                      ..+.
T Consensus       472 ~~i~  475 (485)
T TIGR01317       472 AAVD  475 (485)
T ss_pred             HHHH
Confidence            6653

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PLN02852 ferredoxin-NADP+ reductase

Probab=99.90  E-value=1.5e-22  Score=201.46  Aligned_cols=160  Identities=21%  Similarity=0.275  Sum_probs=112.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHH--CCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLR--EGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG   79 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~--~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~   79 (446)
                      .++|+|||||||||+||..|++  .|++|+|||+.+.+||.+++.-                                  
T Consensus        26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gv----------------------------------   71 (491)
T PLN02852         26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGV----------------------------------   71 (491)
T ss_pred             CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeecc----------------------------------
Confidence            5789999999999999999987  6999999999999999888630                                  


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEE
Q 013303           80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV  159 (446)
Q Consensus        80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VV  159 (446)
                                      .+.++....+...+..+.+..++.  ++.|..|-         ..++.++.     ...||+||
T Consensus        72 ----------------aP~~~~~k~v~~~~~~~~~~~~v~--~~~nv~vg---------~dvtl~~L-----~~~yDaVI  119 (491)
T PLN02852         72 ----------------APDHPETKNVTNQFSRVATDDRVS--FFGNVTLG---------RDVSLSEL-----RDLYHVVV  119 (491)
T ss_pred             ----------------CCCcchhHHHHHHHHHHHHHCCeE--EEcCEEEC---------ccccHHHH-----hhhCCEEE
Confidence                            112223356667777777766655  55554441         11222221     24699999


Q ss_pred             EccCCCCC-CccCCCCCCCCCCccEEEeeec----C------CC--CCCCCCEEEEEecCCcHHHHHHHHhcc-------
Q 013303          160 VCNGHFSV-PRLAQVPGIDSWPGKQMHSHNY----R------IP--NPFQDQVVILIGHYASGLDIKRDLAGF-------  219 (446)
Q Consensus       160 vAtG~~s~-p~~p~i~G~~~~~g~~~hs~~~----~------~~--~~~~~k~VvVVG~G~sg~eia~~l~~~-------  219 (446)
                      +|||  +. ++.+.+||.+. .| ++...++    .      ..  ....+++|+|||+|++|+|+|..|++.       
T Consensus       120 lAtG--a~~~~~l~IpG~d~-~g-V~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~t  195 (491)
T PLN02852        120 LAYG--AESDRRLGIPGEDL-PG-VLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELAST  195 (491)
T ss_pred             EecC--CCCCCCCCCCCCCC-CC-eEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccc
Confidence            9999  44 46778898653 22 2332222    1      00  123689999999999999999998764       


Q ss_pred             --------------CCEEEEEEecCC
Q 013303          220 --------------AKEVHIASRSVA  231 (446)
Q Consensus       220 --------------~~~V~l~~r~~~  231 (446)
                                    .++|+++.|+.+
T Consensus       196 di~~~~l~~l~~~~~~~V~iv~RRg~  221 (491)
T PLN02852        196 DIAEHALEALRGSSVRKVYLVGRRGP  221 (491)
T ss_pred             cccHHHHHHHhhCCCCEEEEEEcCCh
Confidence                          357999999885

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=99.90  E-value=1.3e-22  Score=209.14  Aligned_cols=259  Identities=28%  Similarity=0.349  Sum_probs=168.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+||||||+||++|..|++.|++|++||+.+.+||.+.+.                                   ++
T Consensus       137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~g-----------------------------------ip  181 (564)
T PRK12771        137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYG-----------------------------------IP  181 (564)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec-----------------------------------CC
Confidence            4789999999999999999999999999999999999988763                                   00


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEE-EEEEEcCCCceEEEEEeCCCceEEEEEcEEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEV-LNARLVESNKWKVKSRKKDDVVEEETFDAVVV  160 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V-~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVv  160 (446)
                      .|.+                ..++.+.-.+.+.++|+.  +.+++.+ ..+....               ....||+||+
T Consensus       182 ~~~~----------------~~~~~~~~l~~~~~~Gv~--~~~~~~~~~~~~~~~---------------~~~~~D~Vi~  228 (564)
T PRK12771        182 AYRL----------------PREVLDAEIQRILDLGVE--VRLGVRVGEDITLEQ---------------LEGEFDAVFV  228 (564)
T ss_pred             CccC----------------CHHHHHHHHHHHHHCCCE--EEeCCEECCcCCHHH---------------HHhhCCEEEE
Confidence            1111                134455555567778876  7777665 3321110               0134899999


Q ss_pred             ccCCCCCCccCCCCCCCCCCccEEEeeecC-----CCCCCCCCEEEEEecCCcHHHHHHHHhccC-CEEEEEEecCCcc-
Q 013303          161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYR-----IPNPFQDQVVILIGHYASGLDIKRDLAGFA-KEVHIASRSVADE-  233 (446)
Q Consensus       161 AtG~~s~p~~p~i~G~~~~~g~~~hs~~~~-----~~~~~~~k~VvVVG~G~sg~eia~~l~~~~-~~V~l~~r~~~~~-  233 (446)
                      |||.. .+..+.++|.+. .| +++...+.     ......+++|+|||+|.+|+|.+..+.+.+ ++|++++|.+..+ 
T Consensus       229 AtG~~-~~~~~~i~g~~~-~g-v~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~  305 (564)
T PRK12771        229 AIGAQ-LGKRLPIPGEDA-AG-VLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDM  305 (564)
T ss_pred             eeCCC-CCCcCCCCCCcc-CC-cEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccC
Confidence            99952 234446777542 22 22221111     113456899999999999999999888887 7899999876411 


Q ss_pred             -----ccccCCC-CCCeeeccceeEEccCC-c--------EEe----c-------CC--cEEeecEEEEecCccCCCCCC
Q 013303          234 -----THEKQPG-YDNMWLHSMVERANEDG-T--------VVF----R-------NG--RVVSADVIMHCTGYKYNYPFL  285 (446)
Q Consensus       234 -----~~~~~~~-~~~v~~~~~v~~i~~~~-~--------v~~----~-------dG--~~~~~D~vi~atG~~~~~~~l  285 (446)
                           .+....+ ..++.....+.++..++ .        +.+    .       +|  .++++|.||+|+|..|+.+++
T Consensus       306 ~~~~~~~~~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~  385 (564)
T PRK12771        306 PAHDEEIEEALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGL  385 (564)
T ss_pred             CCCHHHHHHHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhh
Confidence                 1111111 12444455666665332 1        111    1       23  358899999999999998887


Q ss_pred             CC-------CCeeeeCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHH
Q 013303          286 ET-------NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVL  340 (446)
Q Consensus       286 ~~-------~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l  340 (446)
                      ..       .|.+.+|+.        .+. ++.|+||++|++..+ .....+..||+.+|..+
T Consensus       386 ~~~~gl~~~~G~i~vd~~--------~~~-ts~~~Vfa~GD~~~g~~~v~~Av~~G~~aA~~i  439 (564)
T PRK12771        386 ESVPGVEVGRGVVQVDPN--------FMM-TGRPGVFAGGDMVPGPRTVTTAIGHGKKAARNI  439 (564)
T ss_pred             hhccCcccCCCCEEeCCC--------Ccc-CCCCCEEeccCcCCCchHHHHHHHHHHHHHHHH
Confidence            63       234444442        222 458999999988653 34456677888877765

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=99.89  E-value=1.2e-22  Score=193.28  Aligned_cols=244  Identities=21%  Similarity=0.316  Sum_probs=174.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC--cEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG   79 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~--~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~   79 (446)
                      .+.++|||||++|..|+.++++.|.  +++++-++..+    .+.                       .  ..+|+....
T Consensus        74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~----pyd-----------------------r--~~Ls~~~~~  124 (478)
T KOG1336|consen   74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLL----PYD-----------------------R--ARLSKFLLT  124 (478)
T ss_pred             cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccC----ccc-----------------------c--hhcccceee
Confidence            3679999999999999999999985  67777654322    111                       0  000000000


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEE
Q 013303           80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV  159 (446)
Q Consensus        80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VV  159 (446)
                                           ..+.+.....++-+..+++  +.+++.|+.++...   .+|...++.    ++.|++++
T Consensus       125 ---------------------~~~~~a~r~~e~Yke~gIe--~~~~t~v~~~D~~~---K~l~~~~Ge----~~kys~Li  174 (478)
T KOG1336|consen  125 ---------------------VGEGLAKRTPEFYKEKGIE--LILGTSVVKADLAS---KTLVLGNGE----TLKYSKLI  174 (478)
T ss_pred             ---------------------ccccccccChhhHhhcCce--EEEcceeEEeeccc---cEEEeCCCc----eeecceEE
Confidence                                 0011111223355667887  89999999998754   778887775    89999999


Q ss_pred             EccCCCCCCccCCCCCCCCCCccEEEeeecCCCCC--------CCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNP--------FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       160 vAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~--------~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      ||||  +.++.|++||.+.   .  ..+.+++.++        -.++.|+|+|+|..|+|+|.+|...+.+||++++.+.
T Consensus       175 lATG--s~~~~l~~pG~~~---~--nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~  247 (478)
T KOG1336|consen  175 IATG--SSAKTLDIPGVEL---K--NVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPW  247 (478)
T ss_pred             Eeec--CccccCCCCCccc---c--ceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHHHhcCceEEEEccCcc
Confidence            9999  7999999999873   2  2233444332        2367899999999999999999999999999999875


Q ss_pred             c----------cccccC-CCC-CCeeeccceeEEccCC--c---EEecCCcEEeecEEEEecCccCCCCCCC------CC
Q 013303          232 D----------ETHEKQ-PGY-DNMWLHSMVERANEDG--T---VVFRNGRVVSADVIMHCTGYKYNYPFLE------TN  288 (446)
Q Consensus       232 ~----------~~~~~~-~~~-~~v~~~~~v~~i~~~~--~---v~~~dG~~~~~D~vi~atG~~~~~~~l~------~~  288 (446)
                      .          ..+..+ .+. .++...+.+.+++++.  .   |.+.||+++++|.||+++|-+|+.+|+.      ..
T Consensus       248 ~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~~g~~~~~~  327 (478)
T KOG1336|consen  248 LLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLEKGILLDSK  327 (478)
T ss_pred             chhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccccccccccccceeccc
Confidence            1          011111 112 2566677888876543  2   7789999999999999999999999975      45


Q ss_pred             CeeeeCCCCcccccccccCCCCCCCeEEecCCC
Q 013303          289 GIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQ  321 (446)
Q Consensus       289 g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~  321 (446)
                      |.|.+|+..+          ++.|++|++|++.
T Consensus       328 G~i~V~~~f~----------t~~~~VyAiGDva  350 (478)
T KOG1336|consen  328 GGIKVDEFFQ----------TSVPNVYAIGDVA  350 (478)
T ss_pred             CCEeehhcee----------eccCCccccccee
Confidence            6788887776          5599999999664

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=99.87  E-value=1e-21  Score=183.48  Aligned_cols=275  Identities=17%  Similarity=0.153  Sum_probs=181.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      +++|+|+|.|.+|.+.++.|-..-++|+|+...+..-=+|..                       ++.            
T Consensus        55 Kk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLL-----------------------pS~------------   99 (491)
T KOG2495|consen   55 KKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLL-----------------------PST------------   99 (491)
T ss_pred             CceEEEEcCchHHHHHHHhccccccceEEeccccceEEeecc-----------------------CCc------------
Confidence            689999999999999999998888999999987644222211                       000            


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCC----CceEEEEEcE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD----DVVEEETFDA  157 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~----~~~~~~~~d~  157 (446)
                                    +..-...+.+.+-+...+.+-+-.. -.+..+...|++..   .+|+++...    ..+..+.||+
T Consensus       100 --------------~vGTve~rSIvEPIr~i~r~k~~~~-~y~eAec~~iDp~~---k~V~~~s~t~~~~~~e~~i~YDy  161 (491)
T KOG2495|consen  100 --------------TVGTVELRSIVEPIRAIARKKNGEV-KYLEAECTKIDPDN---KKVHCRSLTADSSDKEFVIGYDY  161 (491)
T ss_pred             --------------cccceeehhhhhhHHHHhhccCCCc-eEEecccEeecccc---cEEEEeeeccCCCcceeeecccE
Confidence                          0111122456667777776654432 23456667777654   555554432    2346899999


Q ss_pred             EEEccCCCCCCccCCCCCCCCC---CccEEEeeecC----------------CCCCCCCCEEEEEecCCcHHHHHHHHhc
Q 013303          158 VVVCNGHFSVPRLAQVPGIDSW---PGKQMHSHNYR----------------IPNPFQDQVVILIGHYASGLDIKRDLAG  218 (446)
Q Consensus       158 VVvAtG~~s~p~~p~i~G~~~~---~g~~~hs~~~~----------------~~~~~~~k~VvVVG~G~sg~eia~~l~~  218 (446)
                      ||+|+|  +.++.+.+||..+.   ...+-+....|                +++.-+=-++||||||++|+|.|.+|+.
T Consensus       162 LViA~G--A~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~D  239 (491)
T KOG2495|consen  162 LVIAVG--AEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELAD  239 (491)
T ss_pred             EEEecc--CCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHH
Confidence            999999  89999999997652   22222222211                1111122479999999999999999985


Q ss_pred             c--------------CCEEEEEEecCC-----cccc----ccCCCC--CCeeeccceeEEccCCcEEecC--C--cEEee
Q 013303          219 F--------------AKEVHIASRSVA-----DETH----EKQPGY--DNMWLHSMVERANEDGTVVFRN--G--RVVSA  269 (446)
Q Consensus       219 ~--------------~~~V~l~~r~~~-----~~~~----~~~~~~--~~v~~~~~v~~i~~~~~v~~~d--G--~~~~~  269 (446)
                      .              -.+||++.-.+.     +..+    ......  ..+...+.|+.++++. ++..+  |  +++++
T Consensus       240 fi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~~~-I~~~~~~g~~~~iPY  318 (491)
T KOG2495|consen  240 FIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDLDTGTMVKKVTEKT-IHAKTKDGEIEEIPY  318 (491)
T ss_pred             HHHHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhhccceeecccEEEeecCcE-EEEEcCCCceeeecc
Confidence            3              126888876663     1111    111111  2556667888887654 65544  4  56889


Q ss_pred             cEEEEecCccCCCCC-------CCCCC--eeeeCCCCcccccccccCCCCCCCeEEecCCCccC----chhHHHHHHHHH
Q 013303          270 DVIMHCTGYKYNYPF-------LETNG--IVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI----PFPFFELQSKWI  336 (446)
Q Consensus       270 D~vi~atG~~~~~~~-------l~~~g--~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~----~~~~~~~qa~~~  336 (446)
                      -.++|+||..+. |+       +++.+  .+.+|++++.         .+.+|||+||+|....    +..+++.||.++
T Consensus       319 G~lVWatG~~~r-p~~k~lm~~i~e~~rr~L~vDE~LrV---------~G~~nvfAiGDca~~~~~~~tAQVA~QqG~yL  388 (491)
T KOG2495|consen  319 GLLVWATGNGPR-PVIKDLMKQIDEQGRRGLAVDEWLRV---------KGVKNVFAIGDCADQRGLKPTAQVAEQQGAYL  388 (491)
T ss_pred             eEEEecCCCCCc-hhhhhHhhcCCccCceeeeeeceeec---------cCcCceEEeccccccccCccHHHHHHHHHHHH
Confidence            999999999976 33       34555  5788888774         3478999999987322    446889999999


Q ss_pred             HHHHcC
Q 013303          337 ASVLSG  342 (446)
Q Consensus       337 a~~l~g  342 (446)
                      |+++.-
T Consensus       389 Ak~fn~  394 (491)
T KOG2495|consen  389 AKNFNK  394 (491)
T ss_pred             HHHHHH
Confidence            999863

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=99.86  E-value=5e-21  Score=190.43  Aligned_cols=273  Identities=19%  Similarity=0.245  Sum_probs=192.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHC---CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLRE---GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM   78 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~---g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~   78 (446)
                      +.+++|||.|++|..+..++++.   -+++++|-..+++    +|+                      +.+.+..     
T Consensus         3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~----nY~----------------------Ri~Ls~v-----   51 (793)
T COG1251           3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRP----NYN----------------------RILLSSV-----   51 (793)
T ss_pred             ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCc----ccc----------------------ceeeccc-----
Confidence            46899999999999999999983   3689999876644    121                      0000000     


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEE
Q 013303           79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV  158 (446)
Q Consensus        79 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~V  158 (446)
                          +             +.--+.+++.-.-.++.++.++.  ++.+.+|+.|++..   .+|+++.+.    ++.||.|
T Consensus        52 ----l-------------~~~~~~edi~l~~~dwy~~~~i~--L~~~~~v~~idr~~---k~V~t~~g~----~~~YDkL  105 (793)
T COG1251          52 ----L-------------AGEKTAEDISLNRNDWYEENGIT--LYTGEKVIQIDRAN---KVVTTDAGR----TVSYDKL  105 (793)
T ss_pred             ----c-------------CCCccHHHHhccchhhHHHcCcE--EEcCCeeEEeccCc---ceEEccCCc----Eeeccee
Confidence                0             00012356666667788888988  89999999999854   788887775    8999999


Q ss_pred             EEccCCCCCCccCCCCCCCCCCccEEEeeecCCCC-----CCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC--
Q 013303          159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN-----PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA--  231 (446)
Q Consensus       159 VvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~-----~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~--  231 (446)
                      |+|||  |.|.+|++||.+.+.  ++....+.+..     .-..++-+|||+|.-|+|.|..|...|-+|++++-.+.  
T Consensus       106 ilATG--S~pfi~PiPG~~~~~--v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lM  181 (793)
T COG1251         106 IIATG--SYPFILPIPGSDLPG--VFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLM  181 (793)
T ss_pred             EEecC--ccccccCCCCCCCCC--eeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEEeecchHH
Confidence            99999  999999999987532  22222221111     11245578999999999999999999999999998775  


Q ss_pred             --------ccccccC-CCCC-CeeeccceeEEccCC---cEEecCCcEEeecEEEEecCccCCCCCCCCCC-----eeee
Q 013303          232 --------DETHEKQ-PGYD-NMWLHSMVERANEDG---TVVFRNGRVVSADVIMHCTGYKYNYPFLETNG-----IVTV  293 (446)
Q Consensus       232 --------~~~~~~~-~~~~-~v~~~~~v~~i~~~~---~v~~~dG~~~~~D~vi~atG~~~~~~~l~~~g-----~i~~  293 (446)
                              ...+++. .+.+ .+.+....+++.+++   .+.|+||+.+++|.||+|+|.+|+..+-.+.|     .|.+
T Consensus       182 erQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ela~~aGlavnrGIvv  261 (793)
T COG1251         182 ERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPNDELAKEAGLAVNRGIVV  261 (793)
T ss_pred             HHhhhhHHHHHHHHHHHhhcceeecccchhhhhcCcceeeEeecCCCcccceeEEEecccccccHhHHhcCcCcCCCeee
Confidence                    1111111 1122 455555555554433   28999999999999999999999987643222     3777


Q ss_pred             CCCCcccccccccCCCCCCCeEEecCCC--ccCch---hHHHHHHHHHHHHHcCCCC
Q 013303          294 DDNRVGPLYKHVFPPVLAPGLSFVGIPQ--KVIPF---PFFELQSKWIASVLSGRIV  345 (446)
Q Consensus       294 ~~~~~~~l~~~~~~~~~~p~l~~iG~~~--~~~~~---~~~~~qa~~~a~~l~g~~~  345 (446)
                      |+.++          +++|+||++|-+.  .+..+   .-+--||+.+|.++.|...
T Consensus       262 nd~mq----------TsdpdIYAvGEcae~~g~~yGLVaP~yeq~~v~a~hl~~~~~  308 (793)
T COG1251         262 NDYMQ----------TSDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADHLCGGEA  308 (793)
T ss_pred             ccccc----------ccCCCeeehhhHHHhcCccceehhHHHHHHHHHHHHhccCcc
Confidence            77777          6799999999664  22221   2235699999999998744

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.86  E-value=5e-20  Score=172.04  Aligned_cols=325  Identities=18%  Similarity=0.174  Sum_probs=198.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCC-CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCccc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g-~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~   80 (446)
                      ..|++.||-||+-|+.|..|.+.+ ++++.+||.+.+  .|+...        +.|+..+.-+.+-+-.....|...++|
T Consensus         5 ~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F--~WHpGm--------llegstlQv~FlkDLVTl~~PTs~ySF   74 (436)
T COG3486           5 VLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF--SWHPGM--------LLEGSTLQVPFLKDLVTLVDPTSPYSF   74 (436)
T ss_pred             ceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC--CcCCCc--------ccCCccccccchhhhccccCCCCchHH
Confidence            469999999999999999998875 789999997644  565421        111111112222233333445554444


Q ss_pred             CCCCCCcCC-CCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCC-ceEEEEEeCCCceEEEEEcEE
Q 013303           81 QAYPFVARN-YEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN-KWKVKSRKKDDVVEEETFDAV  158 (446)
Q Consensus        81 ~d~~~~~~~-~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~-~~~v~~~~~~~~~~~~~~d~V  158 (446)
                      -.|-..... .........++++.|+.+|+++.+.++   +.++|+++|+.|...+.+ ...+......+  ..++++.|
T Consensus        75 LNYL~~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l---~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~--~~y~ar~l  149 (436)
T COG3486          75 LNYLHEHGRLYEFLNYETFHIPRREYNDYCQWAASQL---PSLRFGEEVTDISSLDGDAVVRLFVVTANG--TVYRARNL  149 (436)
T ss_pred             HHHHHHcchHhhhhhhhcccccHHHHHHHHHHHHhhC---CccccCCeeccccccCCcceeEEEEEcCCC--cEEEeeeE
Confidence            333211110 011122456789999999999999988   338999999987444322 23322222222  27999999


Q ss_pred             EEccCCCCCCccCC-CCCCCCCCccEEEeeecCC-CCCCCCCE-EEEEecCCcHHHHHHHHhcc----CCEEEEEEecCC
Q 013303          159 VVCNGHFSVPRLAQ-VPGIDSWPGKQMHSHNYRI-PNPFQDQV-VILIGHYASGLDIKRDLAGF----AKEVHIASRSVA  231 (446)
Q Consensus       159 VvAtG~~s~p~~p~-i~G~~~~~g~~~hs~~~~~-~~~~~~k~-VvVVG~G~sg~eia~~l~~~----~~~V~l~~r~~~  231 (446)
                      ||++|  ..|.+|+ +..+..  .+++|+.+|.. ..+..+|+ |.|||+|.||.|+-..|...    ..++.|+.|+..
T Consensus       150 Vlg~G--~~P~IP~~f~~l~~--~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~g  225 (436)
T COG3486         150 VLGVG--TQPYIPPCFRSLIG--ERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSG  225 (436)
T ss_pred             EEccC--CCcCCChHHhCcCc--cceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCC
Confidence            99999  8999995 333322  47999999863 23344555 99999999999999998743    346899999874


Q ss_pred             ---------------cc---cc------------------------------------ccCCC-CC--CeeeccceeEEc
Q 013303          232 ---------------DE---TH------------------------------------EKQPG-YD--NMWLHSMVERAN  254 (446)
Q Consensus       232 ---------------~~---~~------------------------------------~~~~~-~~--~v~~~~~v~~i~  254 (446)
                                     ++   .+                                    +.+.. ..  .+...++|..++
T Consensus       226 f~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~  305 (436)
T COG3486         226 FLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVE  305 (436)
T ss_pred             CCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeee
Confidence                           00   00                                    00000 11  222345677776


Q ss_pred             cCC--cEEe--c---CC--cEEeecEEEEecCccCCCC-CCC---------CCCeeeeCCCCcccccccccCCCCCCCeE
Q 013303          255 EDG--TVVF--R---NG--RVVSADVIMHCTGYKYNYP-FLE---------TNGIVTVDDNRVGPLYKHVFPPVLAPGLS  315 (446)
Q Consensus       255 ~~~--~v~~--~---dG--~~~~~D~vi~atG~~~~~~-~l~---------~~g~i~~~~~~~~~l~~~~~~~~~~p~l~  315 (446)
                      ..+  .+.+  .   +|  +++++|+||+||||....| ||+         ++|...++....     -.-.....-.||
T Consensus       306 ~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~-----v~~~~~~~~~if  380 (436)
T COG3486         306 PAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYR-----VLWDGPGKGRIF  380 (436)
T ss_pred             cCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCcee-----eecCCCCcceEE
Confidence            444  2322  1   22  4578999999999998877 653         334444433221     111001123688


Q ss_pred             EecCCC-----ccCchhHHHHHHHHHHHHHcCCCCCCCHH
Q 013303          316 FVGIPQ-----KVIPFPFFELQSKWIASVLSGRIVLPSQD  350 (446)
Q Consensus       316 ~iG~~~-----~~~~~~~~~~qa~~~a~~l~g~~~lp~~~  350 (446)
                      +.|...     ..+.+.+...-|..+++-|.|+...|...
T Consensus       381 vqn~e~htHGig~pdLsl~a~Raa~I~~~L~g~~~~~~~~  420 (436)
T COG3486         381 VQNAELHTHGIGAPDLSLGAWRAAVILNSLLGREKYPVPA  420 (436)
T ss_pred             EecccccccccCCccchHHHHHHHHHHHHHhCcCCCCCcc
Confidence            887542     22345666778888888899987755443

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=99.75  E-value=8.4e-18  Score=165.92  Aligned_cols=157  Identities=27%  Similarity=0.438  Sum_probs=115.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||||||++|..|++.|++|++||+.+.+||...|.                                     
T Consensus       123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yG-------------------------------------  165 (457)
T COG0493         123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYG-------------------------------------  165 (457)
T ss_pred             CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEec-------------------------------------
Confidence            4789999999999999999999999999999999999999884                                     


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                    .+.|-..+++.+...++.++.|++  ++.|++|-.         .++.+.     ..-.||+|++|
T Consensus       166 --------------IP~~kl~k~i~d~~i~~l~~~Gv~--~~~~~~vG~---------~it~~~-----L~~e~Dav~l~  215 (457)
T COG0493         166 --------------IPDFKLPKDILDRRLELLERSGVE--FKLNVRVGR---------DITLEE-----LLKEYDAVFLA  215 (457)
T ss_pred             --------------CchhhccchHHHHHHHHHHHcCeE--EEEcceECC---------cCCHHH-----HHHhhCEEEEe
Confidence                          122222357888888888888866  887776631         112211     12456999999


Q ss_pred             cCCCCCCccCCCCCCCCCCccEEEeeec--------------CCCCCCCCCEEEEEecCCcHHHHHHHHhccCC-EEEEE
Q 013303          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNY--------------RIPNPFQDQVVILIGHYASGLDIKRDLAGFAK-EVHIA  226 (446)
Q Consensus       162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~--------------~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~-~V~l~  226 (446)
                      +|. ..|+..++||.+. +| +....+|              .....-+||+|+|||+|.+++|++....+.|. +|+.+
T Consensus       216 ~G~-~~~~~l~i~g~d~-~g-v~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~  292 (457)
T COG0493         216 TGA-GKPRPLDIPGEDA-KG-VAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCF  292 (457)
T ss_pred             ccc-cCCCCCCCCCcCC-Cc-chHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEe
Confidence            997 6788888998763 11 1111111              11122356999999999999999988888876 68888


Q ss_pred             Ee
Q 013303          227 SR  228 (446)
Q Consensus       227 ~r  228 (446)
                      .+
T Consensus       293 ~~  294 (457)
T COG0493         293 YR  294 (457)
T ss_pred             cc
Confidence            64

>PTZ00188 adrenodoxin reductase; Provisional

Probab=99.74  E-value=2.1e-16  Score=155.01  Aligned_cols=43  Identities=33%  Similarity=0.356  Sum_probs=39.2

Q ss_pred             CCeEEEECcChHHHHHHHHHH-HCCCcEEEEeeCCCcCceeeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELL-REGHTVVVYEKGEQVGGSWIYT   44 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~-~~g~~v~v~e~~~~~GG~w~~~   44 (446)
                      .++|+||||||||+.||.+|+ +.|++|+|||+.+.+||.+++.
T Consensus        39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~G   82 (506)
T PTZ00188         39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYG   82 (506)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEe
Confidence            468999999999999999875 5699999999999999999983

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=99.73  E-value=4.5e-17  Score=170.16  Aligned_cols=39  Identities=28%  Similarity=0.322  Sum_probs=35.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCce
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS   40 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~   40 (446)
                      .++|+|||||||||+||..|++.|++|++||+....|+.
T Consensus       383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~  421 (1028)
T PRK06567        383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP  421 (1028)
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence            579999999999999999999999999999997665554

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=99.71  E-value=2.1e-16  Score=161.64  Aligned_cols=284  Identities=20%  Similarity=0.264  Sum_probs=163.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||.|||||+||-.|-+.|+.|+|+||.+++||...|.         .                           
T Consensus      1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~yg---------i--------------------------- 1828 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYG---------I--------------------------- 1828 (2142)
T ss_pred             CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeec---------C---------------------------
Confidence            4799999999999999999999999999999999999999884         0                           


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                     +..-..+.+.+.-.+...+-|++  +..|+++-.        . |..+.     ..-..|+||+|
T Consensus      1829 ---------------pnmkldk~vv~rrv~ll~~egi~--f~tn~eigk--------~-vs~d~-----l~~~~daiv~a 1877 (2142)
T KOG0399|consen 1829 ---------------PNMKLDKFVVQRRVDLLEQEGIR--FVTNTEIGK--------H-VSLDE-----LKKENDAIVLA 1877 (2142)
T ss_pred             ---------------CccchhHHHHHHHHHHHHhhCce--EEeeccccc--------c-ccHHH-----HhhccCeEEEE
Confidence                           11111134566666777777876  555655422        1 22211     13568999999


Q ss_pred             cCCCCCCccCCCCCCCC----CCccEEEee--------ecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCE-EEEEEe
Q 013303          162 NGHFSVPRLAQVPGIDS----WPGKQMHSH--------NYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKE-VHIASR  228 (446)
Q Consensus       162 tG~~s~p~~p~i~G~~~----~~g~~~hs~--------~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~-V~l~~r  228 (446)
                      +|. ..|+-.++||.+.    |.-..+|..        .-.....-+||+|+|||||.+|-|+...-.++|++ |.-+.-
T Consensus      1878 ~gs-t~prdlpv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~el 1956 (2142)
T KOG0399|consen 1878 TGS-TTPRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFEL 1956 (2142)
T ss_pred             eCC-CCCcCCCCCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhccceecceee
Confidence            996 5788888998764    110111111        00111234799999999999999988777777654 433322


Q ss_pred             cC--Ccccc--ccCCCCCCe-----------------------ee-------cccee-----EEc--c--CCc---EEec
Q 013303          229 SV--ADETH--EKQPGYDNM-----------------------WL-------HSMVE-----RAN--E--DGT---VVFR  262 (446)
Q Consensus       229 ~~--~~~~~--~~~~~~~~v-----------------------~~-------~~~v~-----~i~--~--~~~---v~~~  262 (446)
                      -+  +.+..  .-.++++.+                       ..       +..|+     +++  .  .|.   +...
T Consensus      1957 lp~pp~~ra~~npwpqwprvfrvdygh~e~~~~~g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~ei~ 2036 (2142)
T KOG0399|consen 1957 LPQPPPERAPDNPWPQWPRVFRVDYGHAEAKEHYGSDPRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKEIN 2036 (2142)
T ss_pred             cCCCCcccCCCCCCccCceEEEeecchHHHHHHhCCCcceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEEEcC
Confidence            11  10000  000000000                       00       01121     111  1  111   1122


Q ss_pred             CC-cEEeecEEEEecCccCCCCCCCCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCccCchhH---HH--HHHHHH
Q 013303          263 NG-RVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVIPFPF---FE--LQSKWI  336 (446)
Q Consensus       263 dG-~~~~~D~vi~atG~~~~~~~l~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~~~~~---~~--~qa~~~  336 (446)
                      +. +.+++|.||+|.||.-.-+-+.+...+..|.....---+..|.++ .+.+|++|++..+....+   -|  .-|+-+
T Consensus      2037 ~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni~t~~~~y~t~-v~~vfaagdcrrgqslvvwai~egrq~a~~v 2115 (2142)
T KOG0399|consen 2037 NSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNILTPKDSYSTD-VAKVFAAGDCRRGQSLVVWAIQEGRQAARQV 2115 (2142)
T ss_pred             CcceeeecceeeeeccccCcchhhhhhcCcccCccccccCCCcccccc-ccceeecccccCCceEEEEEehhhhHHHHHH
Confidence            22 347899999999998654443332224444332211112225555 899999999986554322   22  223334


Q ss_pred             HHHHcCCCCCCCHHHHHH
Q 013303          337 ASVLSGRIVLPSQDEMME  354 (446)
Q Consensus       337 a~~l~g~~~lp~~~~m~~  354 (446)
                      -..+.|.-.||..--+.+
T Consensus      2116 d~~~~~~t~l~~~ggiv~ 2133 (2142)
T KOG0399|consen 2116 DELMGGTTDLPGDGGIVQ 2133 (2142)
T ss_pred             HHHhCCcccCCCCCchhh
Confidence            445566666777654443

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=99.69  E-value=9.6e-16  Score=141.55  Aligned_cols=160  Identities=23%  Similarity=0.349  Sum_probs=108.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG   79 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~   79 (446)
                      .++|||||+||||+.+|..|+++  ++.|.|+|+.+.++|..+|.         ..                        
T Consensus        20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyG---------VA------------------------   66 (468)
T KOG1800|consen   20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYG---------VA------------------------   66 (468)
T ss_pred             CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeec---------cC------------------------
Confidence            46899999999999999999984  68999999999999998873         11                        


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEE-EEEEEcCCCceEEEEEeCCCceEEEEEcEE
Q 013303           80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEV-LNARLVESNKWKVKSRKKDDVVEEETFDAV  158 (446)
Q Consensus        80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V-~~v~~~~~~~~~v~~~~~~~~~~~~~~d~V  158 (446)
                                       |..|.-+.+..-+...+++....  +..|.+| ..+          .+..     .+-.||+|
T Consensus        67 -----------------PDHpEvKnvintFt~~aE~~rfs--f~gNv~vG~dv----------sl~e-----L~~~ydav  112 (468)
T KOG1800|consen   67 -----------------PDHPEVKNVINTFTKTAEHERFS--FFGNVKVGRDV----------SLKE-----LTDNYDAV  112 (468)
T ss_pred             -----------------CCCcchhhHHHHHHHHhhccceE--EEecceecccc----------cHHH-----HhhcccEE
Confidence                             11122233445555555553332  3334333 111          1111     24579999


Q ss_pred             EEccCCCCCCccCCCCCCCCCCccEEEeee----cC-------CCCCCCCCEEEEEecCCcHHHHHHHHhcc--------
Q 013303          159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHN----YR-------IPNPFQDQVVILIGHYASGLDIKRDLAGF--------  219 (446)
Q Consensus       159 VvAtG~~s~p~~p~i~G~~~~~g~~~hs~~----~~-------~~~~~~~k~VvVVG~G~sg~eia~~l~~~--------  219 (446)
                      |+|.|+ ..++..+|||.+. .| ++....    |.       ...++.+.+|+|||.|+.++|+|..|...        
T Consensus       113 vLaYGa-~~dR~L~IPGe~l-~~-V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~T  189 (468)
T KOG1800|consen  113 VLAYGA-DGDRRLDIPGEEL-SG-VISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRT  189 (468)
T ss_pred             EEEecC-CCCcccCCCCccc-cc-ceehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhhCCcccccccc
Confidence            999997 5688889999862 12 222111    22       12356789999999999999999987531        


Q ss_pred             --------------CCEEEEEEecCC
Q 013303          220 --------------AKEVHIASRSVA  231 (446)
Q Consensus       220 --------------~~~V~l~~r~~~  231 (446)
                                    -++|+++.|+.+
T Consensus       190 Di~~~aL~~L~~s~VkdV~lvgRRgp  215 (468)
T KOG1800|consen  190 DIPKLALNLLKRSNVKDVKLVGRRGP  215 (468)
T ss_pred             CCcHHHHhhhhcCCcceEEEEeccCc
Confidence                          137999999875

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.67  E-value=2e-14  Score=138.54  Aligned_cols=204  Identities=21%  Similarity=0.299  Sum_probs=132.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCC---CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREG---HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM   78 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g---~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~   78 (446)
                      +++|+|||+|++|+.+|.+|++.-   ..|.|||+.+.+|+-..|.+..                   +....|.|...|
T Consensus         1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~-------------------p~~~lNv~a~~m   61 (474)
T COG4529           1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEE-------------------PEHLLNVPAARM   61 (474)
T ss_pred             CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCC-------------------chhhhccccccc
Confidence            579999999999999999999852   2399999999999887775321                   112233333333


Q ss_pred             cc--CCCC-----CCc----C-C--CCCCCCCCCCCCHHHHHHHHHHHHHHhCCCC----cEEeCeEEEEEEEcCC-Cce
Q 013303           79 GF--QAYP-----FVA----R-N--YEGSVDLRRYPGHEEVLRYLQNFAREFGVDQ----VVRLHTEVLNARLVES-NKW  139 (446)
Q Consensus        79 ~~--~d~~-----~~~----~-~--~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~----~i~~~~~V~~v~~~~~-~~~  139 (446)
                      +.  +|.|     |-.    . .  .+...+...||++..+.+|+.++...+-...    .....++++++.+..+ +.|
T Consensus        62 S~~~pD~p~~F~~WL~~~~~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~  141 (474)
T COG4529          62 SAFAPDIPQDFVRWLQKQLQRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGY  141 (474)
T ss_pred             cccCCCCchHHHHHHHhcccccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceE
Confidence            21  2311     000    0 0  1124567889999999999988877652111    2344667777777632 678


Q ss_pred             EEEEEeCCCceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccE-EEeeecCCCC---CCCCCEEEEEecCCcHHHHHHH
Q 013303          140 KVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQ-MHSHNYRIPN---PFQDQVVILIGHYASGLDIKRD  215 (446)
Q Consensus       140 ~v~~~~~~~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~-~hs~~~~~~~---~~~~k~VvVVG~G~sg~eia~~  215 (446)
                      .++..++.    +..||.+|+|||| +.|..+. -. ..+.+.. .++..|....   --.+.+|+|+|+|.+.+|....
T Consensus       142 ~~~~~~g~----~~~ad~~Vlatgh-~~~~~~~-~~-~~~~~~~~~ia~~~~~~~ld~v~~~drVli~GsgLt~~D~v~~  214 (474)
T COG4529         142 LVTTADGP----SEIADIIVLATGH-SAPPADP-AA-RDLKGSPRLIADPYPANALDGVDADDRVLIVGSGLTSIDQVLV  214 (474)
T ss_pred             EEecCCCC----eeeeeEEEEeccC-CCCCcch-hh-hccCCCcceeccccCCcccccccCCCceEEecCCchhHHHHHH
Confidence            88888775    7899999999997 3333332 11 1222221 2222222111   1235679999999999999999


Q ss_pred             HhccCC--EEEEEEecCC
Q 013303          216 LAGFAK--EVHIASRSVA  231 (446)
Q Consensus       216 l~~~~~--~V~l~~r~~~  231 (446)
                      |.+.|.  +||++.|+..
T Consensus       215 l~~~gh~g~It~iSRrGl  232 (474)
T COG4529         215 LRRRGHKGPITAISRRGL  232 (474)
T ss_pred             HhccCCccceEEEecccc
Confidence            998765  5999999763

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=99.66  E-value=1.7e-15  Score=151.14  Aligned_cols=204  Identities=20%  Similarity=0.216  Sum_probs=139.6

Q ss_pred             HHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCC
Q 013303          114 REFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN  193 (446)
Q Consensus       114 ~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~  193 (446)
                      .+.++.  ++.+++|..+++..   .+|.+.++     ++.||++|+|||  +.|..++  +.  +..............
T Consensus        64 ~~~~i~--~~~~~~v~~id~~~---~~v~~~~g-----~~~yd~LvlatG--a~~~~~~--~~--~~~~~~~~~~~~~~~  127 (415)
T COG0446          64 RATGID--VRTGTEVTSIDPEN---KVVLLDDG-----EIEYDYLVLATG--ARPRPPP--IS--DWEGVVTLRLREDAE  127 (415)
T ss_pred             HhhCCE--EeeCCEEEEecCCC---CEEEECCC-----cccccEEEEcCC--CcccCCC--cc--ccCceEEECCHHHHH
Confidence            345666  88889999998754   56666654     689999999999  7888776  11  111122222222222


Q ss_pred             CCC-----CCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC--cc----ccc----c-CCCCC-CeeeccceeEEccC
Q 013303          194 PFQ-----DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA--DE----THE----K-QPGYD-NMWLHSMVERANED  256 (446)
Q Consensus       194 ~~~-----~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~--~~----~~~----~-~~~~~-~v~~~~~v~~i~~~  256 (446)
                      .++     .++|+|||+|..|+++|..+++.|.+|+++...+.  ..    .+.    + +...+ ++.....+.++...
T Consensus       128 ~~~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~  207 (415)
T COG0446         128 ALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGK  207 (415)
T ss_pred             HHHHHHhccCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcc
Confidence            111     47999999999999999999999999999998775  11    111    1 11222 35567788888755


Q ss_pred             Cc------EEecCCcEEeecEEEEecCccCCCCCCCC--------CCeeeeCCCCcccccccccCCCC-CCCeEEecCCC
Q 013303          257 GT------VVFRNGRVVSADVIMHCTGYKYNYPFLET--------NGIVTVDDNRVGPLYKHVFPPVL-APGLSFVGIPQ  321 (446)
Q Consensus       257 ~~------v~~~dG~~~~~D~vi~atG~~~~~~~l~~--------~g~i~~~~~~~~~l~~~~~~~~~-~p~l~~iG~~~  321 (446)
                      ..      +...++..+++|.+++++|.+|+..+..+        .|.+.+|+...          ++ .+++|++|++.
T Consensus       208 ~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~~~~----------~~~~~~v~a~GD~~  277 (415)
T COG0446         208 GNTLVVERVVGIDGEEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGG----------TSKDPDVYAAGDVA  277 (415)
T ss_pred             cCcceeeEEEEeCCcEEEeeEEEEeecccccHHHHhhCccceeccCCCEEEccccc----------cCCCCCEEeccceE
Confidence            43      46788889999999999999998554332        23466665555          33 79999999753


Q ss_pred             c-----------cCchhHHHHHHHHHHHHHcCC
Q 013303          322 K-----------VIPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       322 ~-----------~~~~~~~~~qa~~~a~~l~g~  343 (446)
                      .           ...+..+..|++.++.++.+.
T Consensus       278 ~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~~  310 (415)
T COG0446         278 EIPAAETGKGGRIALWAIAVAAGRIAAENIAGA  310 (415)
T ss_pred             eeecccCCceeeeechhhHhhhhHHHHHHhccc
Confidence            2           222345678888888888864

>PRK09897 hypothetical protein; Provisional

Probab=99.60  E-value=1.3e-14  Score=146.58  Aligned_cols=199  Identities=18%  Similarity=0.273  Sum_probs=111.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCC--CcEEEEeeCCCcCceeeeCCCCCCCC-CCCCCC--CCCccCCccCceeecCCCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETESDP-LGVDPN--RYPVHSSLYKSLRVNLPRE   76 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g--~~v~v~e~~~~~GG~w~~~~~~~~~~-~g~~p~--~~~~~~~~y~~l~~~~~~~   76 (446)
                      |++|+||||||+|+++|.+|.+.+  ++|+|||++..+|.-+.+.+...... ....++  ........++-+..+... 
T Consensus         1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~-   79 (534)
T PRK09897          1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDS-   79 (534)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHH-
Confidence            579999999999999999998864  58999999988985555442110000 000000  000000011100000000 


Q ss_pred             CcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-------CCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCc
Q 013303           77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-------GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV  149 (446)
Q Consensus        77 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-------~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~  149 (446)
                      .  +..+....    ...+...|+++..+.+|+++..+.+       |....++.+++|++|++.+ +.|.|++.++.  
T Consensus        80 ~--~~~~g~~~----~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~-~g~~V~t~~gg--  150 (534)
T PRK09897         80 H--LQRYGVKK----ETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITN-AGVMLATNQDL--  150 (534)
T ss_pred             H--HHhcCCcc----eeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC-CEEEEEECCCC--
Confidence            0  00000000    0012346777777777776654443       2222366788999998876 77888775432  


Q ss_pred             eEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecC--CCCCCCCCEEEEEecCCcHHHHHHHHhcc
Q 013303          150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYR--IPNPFQDQVVILIGHYASGLDIKRDLAGF  219 (446)
Q Consensus       150 ~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~--~~~~~~~k~VvVVG~G~sg~eia~~l~~~  219 (446)
                       ..+.+|+||+||||. .|..+  ++...|    +. ..|.  ......+.+|+|+|.|.+++|++..|...
T Consensus       151 -~~i~aD~VVLAtGh~-~p~~~--~~~~~y----i~-~pw~~~~~~~i~~~~V~I~GtGLt~iD~v~~Lt~~  213 (534)
T PRK09897        151 -PSETFDLAVIATGHV-WPDEE--EATRTY----FP-SPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQ  213 (534)
T ss_pred             -eEEEcCEEEECCCCC-CCCCC--hhhccc----cC-CCCcchhhcCCCCCeEEEECCCHHHHHHHHHHHhc
Confidence             368999999999973 33322  111111    00 1111  01123468999999999999999998744

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=99.59  E-value=1.4e-13  Score=131.00  Aligned_cols=41  Identities=37%  Similarity=0.548  Sum_probs=38.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI   42 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~   42 (446)
                      .++++|||||+|||+||..|++.|++|.++|+++.+||...
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrma  164 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMA  164 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHH
Confidence            47899999999999999999999999999999999999854

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.59  E-value=8e-15  Score=137.86  Aligned_cols=149  Identities=17%  Similarity=0.317  Sum_probs=105.8

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCC------
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLP------   74 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~------   74 (446)
                      +.+||+|||||||||.||..+++.|.+|+|||+.+.+|--.......+++-         .++..++.+.++.|      
T Consensus         2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~---------Tn~~~~~~~ls~~p~~~~fl   72 (408)
T COG2081           2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNF---------TNSEAPDEFLSRNPGNGHFL   72 (408)
T ss_pred             CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccc---------cccccHHHHHHhCCCcchHH
Confidence            367999999999999999999999999999999999873333322211110         02222444444444      


Q ss_pred             ---------CCCcccC---CCCCCcCCCCCCCCCCCCCC---HHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCce
Q 013303           75 ---------RELMGFQ---AYPFVARNYEGSVDLRRYPG---HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW  139 (446)
Q Consensus        75 ---------~~~~~~~---d~~~~~~~~~~~~~~~~~~~---~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~  139 (446)
                               .+++.|-   ..++..     ....+.||.   .+.+.+.|..-+++.|+.  ++.+++|.+|++.+ ..+
T Consensus        73 ~sal~~ft~~d~i~~~e~~Gi~~~e-----~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~--i~~~~~v~~v~~~~-~~f  144 (408)
T COG2081          73 KSALARFTPEDFIDWVEGLGIALKE-----EDLGRMFPDSDKASPIVDALLKELEALGVT--IRTRSRVSSVEKDD-SGF  144 (408)
T ss_pred             HHHHHhCCHHHHHHHHHhcCCeeEE-----ccCceecCCccchHHHHHHHHHHHHHcCcE--EEecceEEeEEecC-ceE
Confidence                     2222211   111111     123455664   688999999999999999  99999999999987 789


Q ss_pred             EEEEEeCCCceEEEEEcEEEEccCCCCCCcc
Q 013303          140 KVKSRKKDDVVEEETFDAVVVCNGHFSVPRL  170 (446)
Q Consensus       140 ~v~~~~~~~~~~~~~~d~VVvAtG~~s~p~~  170 (446)
                      .|.+.++.    ++.+|.||||||.-|.|.+
T Consensus       145 ~l~t~~g~----~i~~d~lilAtGG~S~P~l  171 (408)
T COG2081         145 RLDTSSGE----TVKCDSLILATGGKSWPKL  171 (408)
T ss_pred             EEEcCCCC----EEEccEEEEecCCcCCCCC
Confidence            99988874    7999999999998777754

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.58  E-value=4.2e-15  Score=133.13  Aligned_cols=148  Identities=25%  Similarity=0.349  Sum_probs=89.7

Q ss_pred             eEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCCC
Q 013303            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAY   83 (446)
Q Consensus         4 ~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d~   83 (446)
                      ||+|||||+||++||..|++.+.+++++|+.+..+.....                     ++..+..            
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~---------------------~~~~~~~------------   47 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGC---------------------IPSPLLV------------   47 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSH---------------------HHHHHHH------------
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEeccccccccccc---------------------ccccccc------------
Confidence            7999999999999999999999999999886533221000                     0000000            


Q ss_pred             CCCcCCCCCCCCCCCCCCHHHHH--H--HHHHHHHHhCCCCcEEeCeEEEEEEEcCCCc-----eEEEEEeCCCceEEEE
Q 013303           84 PFVARNYEGSVDLRRYPGHEEVL--R--YLQNFAREFGVDQVVRLHTEVLNARLVESNK-----WKVKSRKKDDVVEEET  154 (446)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~--~--yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~-----~~v~~~~~~~~~~~~~  154 (446)
                                   ........+.  +  .+.+.....++.  ++++++|.+++... ..     +.+.... .+...++.
T Consensus        48 -------------~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~-~~~~~~~~~~~~~~-~~~~~~~~  110 (201)
T PF07992_consen   48 -------------EIAPHRHEFLPARLFKLVDQLKNRGVE--IRLNAKVVSIDPES-KRVVCPAVTIQVVE-TGDGREIK  110 (201)
T ss_dssp             -------------HHHHHHHHHHHHHHGHHHHHHHHHTHE--EEHHHTEEEEEEST-TEEEETCEEEEEEE-TTTEEEEE
T ss_pred             -------------cccccccccccccccccccccccceEE--Eeeccccccccccc-cccccCcccceeec-cCCceEec
Confidence                         0000001111  1  222223455666  77899999998765 32     2333322 23456899


Q ss_pred             EcEEEEccCCCCCCccCCCCCCCC--CCccEEEeeecCCCCCCCCCEEEEEe
Q 013303          155 FDAVVVCNGHFSVPRLAQVPGIDS--WPGKQMHSHNYRIPNPFQDQVVILIG  204 (446)
Q Consensus       155 ~d~VVvAtG~~s~p~~p~i~G~~~--~~g~~~hs~~~~~~~~~~~k~VvVVG  204 (446)
                      ||+||+|||  +.|+.|.+||.+.  +...+.++..+...... .++|+|||
T Consensus       111 ~d~lviAtG--~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~-~~~v~VvG  159 (201)
T PF07992_consen  111 YDYLVIATG--SRPRTPNIPGEEVAYFLRGVDDAQRFLELLES-PKRVAVVG  159 (201)
T ss_dssp             EEEEEEEST--EEEEEESSTTTTTECBTTSEEHHHHHHTHSST-TSEEEEES
T ss_pred             CCeeeecCc--cccceeecCCCccccccccccccccccccccc-cccccccc
Confidence            999999999  8899999999732  11234444443333222 34999999

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=99.51  E-value=7.9e-14  Score=130.12  Aligned_cols=210  Identities=18%  Similarity=0.194  Sum_probs=132.5

Q ss_pred             CCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCCCccCC-CCCCC-CCCccEEEeeecCCCCC
Q 013303          117 GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQ-VPGID-SWPGKQMHSHNYRIPNP  194 (446)
Q Consensus       117 ~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~p~~p~-i~G~~-~~~g~~~hs~~~~~~~~  194 (446)
                      |+.  +..+.+|..|+..+   ..|.+.++.    +|.||.++||||  ..|+-.. +.... +...+++   .|+.+.+
T Consensus       271 GvA--vl~G~kvvkid~~d---~~V~LnDG~----~I~YdkcLIATG--~~Pk~l~~~~~A~~evk~kit---~fr~p~D  336 (659)
T KOG1346|consen  271 GVA--VLRGRKVVKIDEED---KKVILNDGT----TIGYDKCLIATG--VRPKKLQVFEEASEEVKQKIT---YFRYPAD  336 (659)
T ss_pred             ceE--EEeccceEEeeccc---CeEEecCCc----EeehhheeeecC--cCcccchhhhhcCHHhhhhee---EEecchH
Confidence            555  66677888887544   678888876    899999999999  6776543 32211 1122232   2444554


Q ss_pred             CC--------CCEEEEEecCCcHHHHHHHHhc----cCCEEEEEEecCC------cccc-----ccCCCCC-Ceeeccce
Q 013303          195 FQ--------DQVVILIGHYASGLDIKRDLAG----FAKEVHIASRSVA------DETH-----EKQPGYD-NMWLHSMV  250 (446)
Q Consensus       195 ~~--------~k~VvVVG~G~sg~eia~~l~~----~~~~V~l~~r~~~------~~~~-----~~~~~~~-~v~~~~~v  250 (446)
                      |+        -++|.|||+|..|.|+|..|.+    .|.+|+.+-....      ++.+     .++.+.+ .+.-+..|
T Consensus       337 F~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v  416 (659)
T KOG1346|consen  337 FKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKV  416 (659)
T ss_pred             HHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchhh
Confidence            42        3789999999999999999975    3567877755432      1111     1222222 34445556


Q ss_pred             eEEccCC---cEEecCCcEEeecEEEEecCccCCCCCCCCCCeeeeCCCCcccccccccCCCCCCCeEEecCCC---cc-
Q 013303          251 ERANEDG---TVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQ---KV-  323 (446)
Q Consensus       251 ~~i~~~~---~v~~~dG~~~~~D~vi~atG~~~~~~~l~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~---~~-  323 (446)
                      +++....   .+.+.||.++..|.||.|+|-.||..+....| +.+|+..-+-..+..+..  -.|||+.|+..   ++ 
T Consensus       417 ~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~~sg-LeiD~~lGGfrvnaeL~a--r~NvwvAGdaacF~D~~  493 (659)
T KOG1346|consen  417 ESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAEASG-LEIDEKLGGFRVNAELKA--RENVWVAGDAACFEDGV  493 (659)
T ss_pred             hhhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhccccc-ceeecccCcEEeeheeec--ccceeeecchhhhhccc
Confidence            6654332   26789999999999999999999998877665 666665433222222222  36999999543   11 


Q ss_pred             ------CchhHHHHHHHHHHHHHcCC
Q 013303          324 ------IPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       324 ------~~~~~~~~qa~~~a~~l~g~  343 (446)
                            ...-.+...+|.+..+++|.
T Consensus       494 LGrRRVehhdhavvSGRLAGENMtgA  519 (659)
T KOG1346|consen  494 LGRRRVEHHDHAVVSGRLAGENMTGA  519 (659)
T ss_pred             ccceeccccccceeeceecccccccc
Confidence                  11122344566777777664

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.45  E-value=2.2e-13  Score=133.59  Aligned_cols=153  Identities=27%  Similarity=0.394  Sum_probs=82.9

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcC--------ceeeeCC-CCCCCCC-CCCCCCCCccCCccCceeec
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG--------GSWIYTS-ETESDPL-GVDPNRYPVHSSLYKSLRVN   72 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G--------G~w~~~~-~~~~~~~-g~~p~~~~~~~~~y~~l~~~   72 (446)
                      +||+|||||||||.||..|++.|.+|+|+|+++.+|        |.|+.+. ......+ ...+..   ...+.+.+...
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~---~~f~~~~l~~f   77 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRN---PKFLKSALKRF   77 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBT---TTCTHHHHHHS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccc---hHHHHHHHhcC
Confidence            689999999999999999999999999999999886        6777653 1111100 000000   00011111111


Q ss_pred             CCCCCcccC---CCCCCcCCCCCCCCCCCCC---CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC
Q 013303           73 LPRELMGFQ---AYPFVARNYEGSVDLRRYP---GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK  146 (446)
Q Consensus        73 ~~~~~~~~~---d~~~~~~~~~~~~~~~~~~---~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~  146 (446)
                      .+.+++.|-   ..++..     ..+...||   ....+.+.|...+++.+++  ++++++|.+|...+++.|.|.+++.
T Consensus        78 ~~~d~~~ff~~~Gv~~~~-----~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~--i~~~~~V~~i~~~~~~~f~v~~~~~  150 (409)
T PF03486_consen   78 SPEDLIAFFEELGVPTKI-----EEDGRVFPKSDKASSVVDALLEELKRLGVE--IHFNTRVKSIEKKEDGVFGVKTKNG  150 (409)
T ss_dssp             -HHHHHHHHHHTT--EEE------STTEEEETT--HHHHHHHHHHHHHHHT-E--EE-S--EEEEEEETTEEEEEEETTT
T ss_pred             CHHHHHHHHHhcCCeEEE-----cCCCEECCCCCcHHHHHHHHHHHHHHcCCE--EEeCCEeeeeeecCCceeEeeccCc
Confidence            111111110   111111     11233344   4578999999999999998  9999999999987734488888322


Q ss_pred             CCceEEEEEcEEEEccCCCCCCc
Q 013303          147 DDVVEEETFDAVVVCNGHFSVPR  169 (446)
Q Consensus       147 ~~~~~~~~~d~VVvAtG~~s~p~  169 (446)
                          .++.+|.||+|||..+.|.
T Consensus       151 ----~~~~a~~vILAtGG~S~p~  169 (409)
T PF03486_consen  151 ----GEYEADAVILATGGKSYPK  169 (409)
T ss_dssp             ----EEEEESEEEE----SSSGG
T ss_pred             ----ccccCCEEEEecCCCCccc
Confidence                4899999999999766654

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=99.44  E-value=6.3e-13  Score=113.68  Aligned_cols=134  Identities=26%  Similarity=0.380  Sum_probs=90.7

Q ss_pred             EEECcChHHHHHHHHHHHC-----CCcEEEEeeCCCc-CceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcc
Q 013303            6 AVIGAGAAGLVVGHELLRE-----GHTVVVYEKGEQV-GGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG   79 (446)
Q Consensus         6 ~IIGaG~aGl~aA~~l~~~-----g~~v~v~e~~~~~-GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~   79 (446)
                      +|||||++|++++.+|.+.     ..+|+|||+.+.- |+.|...                    .-+.+..|++...|.
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~--------------------~~~~~llN~~a~~~s   60 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPD--------------------QPPSHLLNTPADQMS   60 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCC--------------------CChHHhhcccccccc
Confidence            6999999999999999987     4689999996542 3456542                    122334455555444


Q ss_pred             cC-CCC---CCcCC---C---CCCCCCCCCCCHHHHHHHHHHHHHHhC--CCC---cEEeCeEEEEEEEcCCCceEEEEE
Q 013303           80 FQ-AYP---FVARN---Y---EGSVDLRRYPGHEEVLRYLQNFAREFG--VDQ---VVRLHTEVLNARLVESNKWKVKSR  144 (446)
Q Consensus        80 ~~-d~~---~~~~~---~---~~~~~~~~~~~~~~v~~yl~~~~~~~~--l~~---~i~~~~~V~~v~~~~~~~~~v~~~  144 (446)
                      .. +-|   |....   .   ........|+++..+.+||.++.+..-  +..   ....+.+|+.|++.+ +.|.|.+.
T Consensus        61 ~~~~~~~~~f~~Wl~~~~~~~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~-~~~~v~~~  139 (156)
T PF13454_consen   61 LFPDDPGDDFVDWLRANGADEAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDD-DGYRVVTA  139 (156)
T ss_pred             cccccCCCCHHHHHHhcCcccccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcC-CcEEEEEC
Confidence            32 111   11000   0   012235789999999999998877752  211   123467999999887 77988887


Q ss_pred             eCCCceEEEEEcEEEEccCC
Q 013303          145 KKDDVVEEETFDAVVVCNGH  164 (446)
Q Consensus       145 ~~~~~~~~~~~d~VVvAtG~  164 (446)
                      ++.    .+.||.||+||||
T Consensus       140 ~g~----~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  140 DGQ----SIRADAVVLATGH  155 (156)
T ss_pred             CCC----EEEeCEEEECCCC
Confidence            765    7899999999996

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=99.34  E-value=7.9e-12  Score=110.28  Aligned_cols=82  Identities=13%  Similarity=0.309  Sum_probs=57.2

Q ss_pred             CceEEEEEeCCCceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCC-----CCCCEEEEEecCCcHHH
Q 013303          137 NKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNP-----FQDQVVILIGHYASGLD  211 (446)
Q Consensus       137 ~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~-----~~~k~VvVVG~G~sg~e  211 (446)
                      ....+.++++.    ++.|++|++|||  .+|.+-. +|.+.   +++-..+-.....     -+.|+|+|+|.|-+++|
T Consensus        79 ~ehci~t~~g~----~~ky~kKOG~tg--~kPklq~-E~~n~---~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~E  148 (334)
T KOG2755|consen   79 SEHCIHTQNGE----KLKYFKLCLCTG--YKPKLQV-EGINP---KIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAME  148 (334)
T ss_pred             ccceEEecCCc----eeeEEEEEEecC--CCcceee-cCCCc---eEEEEecCcHHHHHHHHHhhcceEEEEecCchhHH
Confidence            34667777765    799999999999  8887642 33222   3444333333222     35799999999999999


Q ss_pred             HHHHHhccCCEEEEEEecC
Q 013303          212 IKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       212 ia~~l~~~~~~V~l~~r~~  230 (446)
                      ++.++..  .+|+|....+
T Consensus       149 l~yElk~--~nv~w~ikd~  165 (334)
T KOG2755|consen  149 LTYELKI--LNVTWKIKDE  165 (334)
T ss_pred             HHHHhhc--ceeEEEecch
Confidence            9999864  4688877654

>PRK06847 hypothetical protein; Provisional

Probab=99.34  E-value=4.1e-11  Score=118.12  Aligned_cols=157  Identities=21%  Similarity=0.200  Sum_probs=91.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcC---ceeeeCCCCC--CCCCCCCCCCCCc-cCCccCceeecCCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG---GSWIYTSETE--SDPLGVDPNRYPV-HSSLYKSLRVNLPR   75 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G---G~w~~~~~~~--~~~~g~~p~~~~~-~~~~y~~l~~~~~~   75 (446)
                      ++||+|||||++||++|..|++.|++|+|+|+.+.+.   ......+...  .+..|+.+.  +. .......+....+.
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~--~~~~~~~~~~~~~~~~~   81 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDE--CLEAGFGFDGVDLFDPD   81 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHH--HHHhCCCccceEEECCC
Confidence            5799999999999999999999999999999986532   1111100000  000011000  00 00000111111110


Q ss_pred             CCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEE
Q 013303           76 ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF  155 (446)
Q Consensus        76 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~  155 (446)
                      .. .+..++.+... ...........+.++.++|.+.+.+.++.  ++++++|++++..+ +.++|++.++.    ++.+
T Consensus        82 g~-~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~-~~~~v~~~~g~----~~~a  152 (375)
T PRK06847         82 GT-LLAELPTPRLA-GDDLPGGGGIMRPALARILADAARAAGAD--VRLGTTVTAIEQDD-DGVTVTFSDGT----TGRY  152 (375)
T ss_pred             CC-EEEecCccccc-ccCCCCcccCcHHHHHHHHHHHHHHhCCE--EEeCCEEEEEEEcC-CEEEEEEcCCC----EEEc
Confidence            00 00011110000 00001123456788999999999888887  99999999998766 66777776553    6899


Q ss_pred             cEEEEccCCCCCCc
Q 013303          156 DAVVVCNGHFSVPR  169 (446)
Q Consensus       156 d~VVvAtG~~s~p~  169 (446)
                      |.||+|+|.++..+
T Consensus       153 d~vI~AdG~~s~~r  166 (375)
T PRK06847        153 DLVVGADGLYSKVR  166 (375)
T ss_pred             CEEEECcCCCcchh
Confidence            99999999877554

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.31  E-value=1.7e-11  Score=113.36  Aligned_cols=141  Identities=22%  Similarity=0.174  Sum_probs=87.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeec-CCCCCccc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVN-LPRELMGF   80 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~-~~~~~~~~   80 (446)
                      ..||+||||||||++||..|++.|++|+|+|+...+||...-..        .          .++..... .....+.-
T Consensus        25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg--------~----------~~~~~~v~~~~~~~l~~   86 (257)
T PRK04176         25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGG--------M----------LFNKIVVQEEADEILDE   86 (257)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCc--------c----------ccccccchHHHHHHHHH
Confidence            47999999999999999999999999999999988876422110        0          00000000 00000010


Q ss_pred             CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCc-eEEEEEe------C-CCceEE
Q 013303           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRK------K-DDVVEE  152 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~------~-~~~~~~  152 (446)
                      ...++...     .+.....++.++...|.+.+.+.|+.  ++++++|..+...+++. +-+.+..      + ..+..+
T Consensus        87 ~gv~~~~~-----~~g~~~vd~~~l~~~L~~~A~~~Gv~--I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~  159 (257)
T PRK04176         87 FGIRYKEV-----EDGLYVADSVEAAAKLAAAAIDAGAK--IFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLT  159 (257)
T ss_pred             CCCCceee-----cCcceeccHHHHHHHHHHHHHHcCCE--EEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEE
Confidence            11222111     00112345678888899999999988  99999999997655322 2222211      1 113457


Q ss_pred             EEEcEEEEccCCCCC
Q 013303          153 ETFDAVVVCNGHFSV  167 (446)
Q Consensus       153 ~~~d~VVvAtG~~s~  167 (446)
                      +.++.||+|||+++.
T Consensus       160 i~Ak~VI~ATG~~a~  174 (257)
T PRK04176        160 IEAKAVVDATGHDAE  174 (257)
T ss_pred             EEcCEEEEEeCCCcH
Confidence            999999999998653

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=99.29  E-value=2.3e-11  Score=115.61  Aligned_cols=146  Identities=23%  Similarity=0.220  Sum_probs=88.0

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCC--CCCCCCCCCCCCccCCccCceeecCCCCCccc
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~--~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~   80 (446)
                      +||+|||||++|+++|..|++.|++|+|+|+...++..+....-..  ....+.. .....  ..........+....  
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~--~~~~~~~~~~~~~~~--   75 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLP-LELIV--NLVRGARFFSPNGDS--   75 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCC-chhhh--hheeeEEEEcCCCcE--
Confidence            5899999999999999999999999999999877654322110000  0000000 00000  000000000000000  


Q ss_pred             CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEE
Q 013303           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV  160 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVv  160 (446)
                      .+.+.+.       ......++.++.+.|.+.+.+.++.  ++++++|+.+...+ +.+.+.+.++   ..++++|+||+
T Consensus        76 ~~~~~~~-------~~~~~i~r~~l~~~l~~~~~~~gv~--~~~~~~v~~~~~~~-~~~~~~~~~~---~~~~~a~~vv~  142 (295)
T TIGR02032        76 VEIPIET-------ELAYVIDRDAFDEQLAERAQEAGAE--LRLGTTVLDVEIHD-DRVVVIVRGG---EGTVTAKIVIG  142 (295)
T ss_pred             EEeccCC-------CcEEEEEHHHHHHHHHHHHHHcCCE--EEeCcEEeeEEEeC-CEEEEEEcCc---cEEEEeCEEEE
Confidence            0111110       1122357788999999999988887  89999999998766 5566655432   24789999999


Q ss_pred             ccCCCC
Q 013303          161 CNGHFS  166 (446)
Q Consensus       161 AtG~~s  166 (446)
                      |+|.++
T Consensus       143 a~G~~s  148 (295)
T TIGR02032       143 ADGSRS  148 (295)
T ss_pred             CCCcch
Confidence            999765

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=99.27  E-value=6.4e-11  Score=117.15  Aligned_cols=149  Identities=18%  Similarity=0.194  Sum_probs=89.7

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeC-CCc---CceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCc
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKG-EQV---GGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM   78 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~-~~~---GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~   78 (446)
                      +||+||||||||+++|+.|++.|++|+|+|+. ...   ||.....   ..+..+.. . . +....+.......|....
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~---~l~~l~i~-~-~-~~~~~~~~~~~~~~~~~~   74 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPC---LIEEFDIP-D-S-LIDRRVTQMRMISPSRVP   74 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHh---hhhhcCCc-h-H-HHhhhcceeEEEcCCCce
Confidence            59999999999999999999999999999997 221   1111100   00111110 0 0 001122233332322210


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC----CCceEEEE
Q 013303           79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK----DDVVEEET  154 (446)
Q Consensus        79 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~----~~~~~~~~  154 (446)
                      -..+++...       ......++..+.++|.+.+.+.|++  ++. ++|+++...+ +.+.|++.++    .++..++.
T Consensus        75 ~~~~~~~~~-------~~~~~~~r~~fd~~L~~~a~~~G~~--v~~-~~v~~v~~~~-~~~~v~~~~~~~~~~~~~~~i~  143 (388)
T TIGR02023        75 IKVTIPSED-------GYVGMVRREVFDSYLRERAQKAGAE--LIH-GLFLKLERDR-DGVTLTYRTPKKGAGGEKGSVE  143 (388)
T ss_pred             eeeccCCCC-------CceEeeeHHHHHHHHHHHHHhCCCE--EEe-eEEEEEEEcC-CeEEEEEEeccccCCCcceEEE
Confidence            000111100       0111368899999999999998887  654 5688987766 6788887652    22335799


Q ss_pred             EcEEEEccCCCCCC
Q 013303          155 FDAVVVCNGHFSVP  168 (446)
Q Consensus       155 ~d~VVvAtG~~s~p  168 (446)
                      +|.||.|+|.+|..
T Consensus       144 a~~VI~AdG~~S~v  157 (388)
T TIGR02023       144 ADVVIGADGANSPV  157 (388)
T ss_pred             eCEEEECCCCCcHH
Confidence            99999999976654

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.27  E-value=3.9e-11  Score=110.64  Aligned_cols=138  Identities=22%  Similarity=0.204  Sum_probs=87.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCc-eeeeCCCCCCCCCCCCCCCCCccCCccCceeec-CCCCCcc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG-SWIYTSETESDPLGVDPNRYPVHSSLYKSLRVN-LPRELMG   79 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG-~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~-~~~~~~~   79 (446)
                      .+||+|||||||||+||..|++.|++|+|+||+..+|| .|...         .          .+..+... .....+.
T Consensus        21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg---------~----------~~~~~~~~~~~~~~l~   81 (254)
T TIGR00292        21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGG---------M----------LFSKIVVEKPAHEILD   81 (254)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCC---------c----------ceecccccchHHHHHH
Confidence            47999999999999999999999999999999998864 44321         0          01110000 0001111


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceE---EEEEe------CC-Cc
Q 013303           80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK---VKSRK------KD-DV  149 (446)
Q Consensus        80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~---v~~~~------~~-~~  149 (446)
                      -.+.++...     .......++.++.+.|.+.+.+.++.  +.++++|..+...+ +.+.   |.+..      +. .+
T Consensus        82 ~~gi~~~~~-----~~g~~~~~~~el~~~L~~~a~e~GV~--I~~~t~V~dli~~~-~~~~V~GVv~~~~~v~~~g~~~d  153 (254)
T TIGR00292        82 EFGIRYEDE-----GDGYVVADSAEFISTLASKALQAGAK--IFNGTSVEDLITRD-DTVGVAGVVINWSAIELAGLHVD  153 (254)
T ss_pred             HCCCCeeec-----cCceEEeeHHHHHHHHHHHHHHcCCE--EECCcEEEEEEEeC-CCCceEEEEeCCccccccCCCCC
Confidence            112233221     00112235678899999999999987  99999999988765 3222   22211      11 12


Q ss_pred             eEEEEEcEEEEccCCCC
Q 013303          150 VEEETFDAVVVCNGHFS  166 (446)
Q Consensus       150 ~~~~~~d~VVvAtG~~s  166 (446)
                      ..++.++.||.|||+.+
T Consensus       154 ~~~i~Ak~VVdATG~~a  170 (254)
T TIGR00292       154 PLTQRSRVVVDATGHDA  170 (254)
T ss_pred             CEEEEcCEEEEeecCCc
Confidence            46799999999999754

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.26  E-value=4.9e-11  Score=118.18  Aligned_cols=146  Identities=23%  Similarity=0.268  Sum_probs=91.9

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCC---CCCCCCCCCCCccCCccCceeecCCCCC
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETES---DPLGVDPNRYPVHSSLYKSLRVNLPREL   77 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~---~~~g~~p~~~~~~~~~y~~l~~~~~~~~   77 (446)
                      |++||+||||||||++||+.|++.|++|+|+|+.+.+|...........   +.....+... +...+... ....+...
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~-i~~~v~~~-~~~~~~~~   79 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEE-IERKVTGA-RIYFPGEK   79 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchh-hheeeeee-EEEecCCc
Confidence            5789999999999999999999999999999999888753222100000   0000000000 00001100 00011000


Q ss_pred             cccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcE
Q 013303           78 MGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA  157 (446)
Q Consensus        78 ~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~  157 (446)
                      ..+   ..+       ........+..+.++|.+.+++.|.+  ++.+++|..+..++ +...+.+..++   .++.+++
T Consensus        80 ~~~---~~~-------~~~~y~v~R~~fd~~La~~A~~aGae--~~~~~~~~~~~~~~-~~~~~~~~~~~---~e~~a~~  143 (396)
T COG0644          80 VAI---EVP-------VGEGYIVDRAKFDKWLAERAEEAGAE--LYPGTRVTGVIRED-DGVVVGVRAGD---DEVRAKV  143 (396)
T ss_pred             eEE---ecC-------CCceEEEEhHHhhHHHHHHHHHcCCE--EEeceEEEEEEEeC-CcEEEEEEcCC---EEEEcCE
Confidence            000   000       00122346788999999999999999  99999999999887 55666555543   5899999


Q ss_pred             EEEccCC
Q 013303          158 VVVCNGH  164 (446)
Q Consensus       158 VVvAtG~  164 (446)
                      ||.|+|.
T Consensus       144 vI~AdG~  150 (396)
T COG0644         144 VIDADGV  150 (396)
T ss_pred             EEECCCc
Confidence            9999995

>PRK08244 hypothetical protein; Provisional

Probab=99.25  E-value=9.8e-11  Score=119.57  Aligned_cols=155  Identities=24%  Similarity=0.225  Sum_probs=90.4

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcC---ceeeeCCCCC--CCCCCCCCCCCCc-cCCccCceeecCC
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG---GSWIYTSETE--SDPLGVDPNRYPV-HSSLYKSLRVNLP   74 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G---G~w~~~~~~~--~~~~g~~p~~~~~-~~~~y~~l~~~~~   74 (446)
                      |.+||+||||||+||++|..|++.|++|+|+|+.+.+.   ......++.-  .+..|+...  +. ....+........
T Consensus         1 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~--l~~~~~~~~~~~~~~~   78 (493)
T PRK08244          1 MKYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLER--FLEKGRKLPSGHFAGL   78 (493)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHH--HHhhcccccceEEecc
Confidence            56899999999999999999999999999999976431   0000000000  000111000  00 0000111110000


Q ss_pred             CCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEE
Q 013303           75 RELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET  154 (446)
Q Consensus        75 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~  154 (446)
                      ...+.+...+.       ........+...+.+.|.+.+++.+++  ++++++|++++..+ +..++++.+.++ ..+++
T Consensus        79 ~~~~~~~~~~~-------~~~~~~~i~q~~le~~L~~~~~~~gv~--v~~~~~v~~i~~~~-~~v~v~~~~~~g-~~~i~  147 (493)
T PRK08244         79 DTRLDFSALDT-------SSNYTLFLPQAETEKVLEEHARSLGVE--IFRGAEVLAVRQDG-DGVEVVVRGPDG-LRTLT  147 (493)
T ss_pred             cccCCcccCCC-------CCCcEEEecHHHHHHHHHHHHHHcCCe--EEeCCEEEEEEEcC-CeEEEEEEeCCc-cEEEE
Confidence            00011111000       000112245678888898888888887  99999999998776 667777765333 34789


Q ss_pred             EcEEEEccCCCCCC
Q 013303          155 FDAVVVCNGHFSVP  168 (446)
Q Consensus       155 ~d~VVvAtG~~s~p  168 (446)
                      +|+||.|.|.+|..
T Consensus       148 a~~vVgADG~~S~v  161 (493)
T PRK08244        148 SSYVVGADGAGSIV  161 (493)
T ss_pred             eCEEEECCCCChHH
Confidence            99999999976643

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.24  E-value=7.6e-11  Score=117.86  Aligned_cols=153  Identities=20%  Similarity=0.165  Sum_probs=86.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCC-CCCCCCC---CCccCC-ccCceeecCCCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDP-LGVDPNR---YPVHSS-LYKSLRVNLPRE   76 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~-~g~~p~~---~~~~~~-~y~~l~~~~~~~   76 (446)
                      ++||+||||||||++||..|++.|++|+|+|+.+.+|............. ..+.|..   ..+... ....+.......
T Consensus         5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (428)
T PRK10157          5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKS   84 (428)
T ss_pred             cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCC
Confidence            47999999999999999999999999999999877653211000000000 0000000   000000 000000000111


Q ss_pred             C--cccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEE
Q 013303           77 L--MGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET  154 (446)
Q Consensus        77 ~--~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~  154 (446)
                      .  +.+.+-....     .........+.++.++|.+.+++.|+.  ++.+++|+++...+ +.+.+...++    .++.
T Consensus        85 ~~~~~~~~~~~~~-----~~~~~~~v~R~~fD~~L~~~a~~~Gv~--i~~~~~V~~i~~~~-g~v~~v~~~g----~~i~  152 (428)
T PRK10157         85 AMTMDYCNGDETS-----PSQRSYSVLRSKFDAWLMEQAEEAGAQ--LITGIRVDNLVQRD-GKVVGVEADG----DVIE  152 (428)
T ss_pred             ceeeccccccccC-----CCCCceeeEHHHHHHHHHHHHHHCCCE--EECCCEEEEEEEeC-CEEEEEEcCC----cEEE
Confidence            1  1111100000     001122346788999999999999988  89999999998655 5444333232    2689


Q ss_pred             EcEEEEccCCCC
Q 013303          155 FDAVVVCNGHFS  166 (446)
Q Consensus       155 ~d~VVvAtG~~s  166 (446)
                      +|.||+|+|..+
T Consensus       153 A~~VI~A~G~~s  164 (428)
T PRK10157        153 AKTVILADGVNS  164 (428)
T ss_pred             CCEEEEEeCCCH
Confidence            999999999643

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=99.22  E-value=1.8e-10  Score=118.76  Aligned_cols=162  Identities=20%  Similarity=0.137  Sum_probs=93.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCce---eeeCCCCC--CCCCCCCCCCCCccCCccCceeecCCCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS---WIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPRE   76 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~---w~~~~~~~--~~~~g~~p~~~~~~~~~y~~l~~~~~~~   76 (446)
                      .+||+||||||+||++|..|++.|++|+|||+.+.++..   +...+..-  .+..|+.... .-.......+....+..
T Consensus        10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l-~~~~~~~~~~~~~~~~g   88 (538)
T PRK06183         10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEV-LPHTTPNHGMRFLDAKG   88 (538)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHH-HhhcccCCceEEEcCCC
Confidence            479999999999999999999999999999998765321   11110000  0001111000 00000011111111110


Q ss_pred             CcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEE
Q 013303           77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF  155 (446)
Q Consensus        77 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~  155 (446)
                       ..+.+++.+.. ...+.......+..++.++|.+.+.++ +++  ++++++|++++..+ +.++|++.+.+++..++++
T Consensus        89 -~~~~~~~~~~~-~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~--v~~g~~v~~i~~~~-~~v~v~~~~~~G~~~~i~a  163 (538)
T PRK06183         89 -RCLAEIARPST-GEFGWPRRNAFHQPLLEAVLRAGLARFPHVR--VRFGHEVTALTQDD-DGVTVTLTDADGQRETVRA  163 (538)
T ss_pred             -CEEEEEcCCCC-CCCCCChhccCChHHHHHHHHHHHHhCCCcE--EEcCCEEEEEEEcC-CeEEEEEEcCCCCEEEEEE
Confidence             00111111000 000000112345667888888887775 676  99999999999876 6788888754444568999


Q ss_pred             cEEEEccCCCCCCc
Q 013303          156 DAVVVCNGHFSVPR  169 (446)
Q Consensus       156 d~VVvAtG~~s~p~  169 (446)
                      |+||.|+|.+|..+
T Consensus       164 d~vVgADG~~S~vR  177 (538)
T PRK06183        164 RYVVGCDGANSFVR  177 (538)
T ss_pred             EEEEecCCCchhHH
Confidence            99999999877554

>PRK06834 hypothetical protein; Provisional

Probab=99.20  E-value=1.9e-10  Score=116.73  Aligned_cols=141  Identities=20%  Similarity=0.241  Sum_probs=86.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcC--cee--eeCCCCC--CCCCCCCCCCCCccCCccCceeec---
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG--GSW--IYTSETE--SDPLGVDPNRYPVHSSLYKSLRVN---   72 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G--G~w--~~~~~~~--~~~~g~~p~~~~~~~~~y~~l~~~---   72 (446)
                      ..||+||||||+|+++|..|++.|++|+|+|+.+...  +.-  ...++.-  .+..|           +++.+...   
T Consensus         3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lG-----------l~~~l~~~~~~   71 (488)
T PRK06834          3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRG-----------IADRFLAQGQV   71 (488)
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcC-----------cHHHHHhcCCc
Confidence            5799999999999999999999999999999976421  100  0000000  00011           11111100   


Q ss_pred             -----CCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCC
Q 013303           73 -----LPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD  147 (446)
Q Consensus        73 -----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~  147 (446)
                           .....+.+.+++..       ...........+.+.|.+.+++.++.  ++++++|++++..+ +.+.|++.++ 
T Consensus        72 ~~~~~~~~~~~~~~~~~~~-------~~~~~~i~q~~le~~L~~~l~~~gv~--i~~~~~v~~v~~~~-~~v~v~~~~g-  140 (488)
T PRK06834         72 AQVTGFAATRLDISDFPTR-------HNYGLALWQNHIERILAEWVGELGVP--IYRGREVTGFAQDD-TGVDVELSDG-  140 (488)
T ss_pred             cccceeeeEecccccCCCC-------CCccccccHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEcC-CeEEEEECCC-
Confidence                 00000111111100       00112235577888898888888887  99999999999876 6677776443 


Q ss_pred             CceEEEEEcEEEEccCCCCC
Q 013303          148 DVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       148 ~~~~~~~~d~VVvAtG~~s~  167 (446)
                         .++.+|+||.|+|.+|.
T Consensus       141 ---~~i~a~~vVgADG~~S~  157 (488)
T PRK06834        141 ---RTLRAQYLVGCDGGRSL  157 (488)
T ss_pred             ---CEEEeCEEEEecCCCCC
Confidence               27899999999997664

>TIGR02028 ChlP geranylgeranyl reductase

Probab=99.20  E-value=1.7e-10  Score=114.22  Aligned_cols=152  Identities=16%  Similarity=0.160  Sum_probs=86.1

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCC-CCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSE-TESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~-~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .||+||||||||++||..|++.|++|+|+|+....+..|...-. ......|..+.  .+ ......+....|... .+ 
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~--~~-~~~i~~~~~~~p~~~-~~-   75 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRD--II-DRRVTKMKMISPSNI-AV-   75 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchh--HH-HhhhceeEEecCCce-EE-
Confidence            48999999999999999999999999999997654332211000 00001111100  00 001112222222211 00 


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEc--CCCceEEEEEeCC-----CceEEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV--ESNKWKVKSRKKD-----DVVEEET  154 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~--~~~~~~v~~~~~~-----~~~~~~~  154 (446)
                      ++.....    ........++..+.++|.+.+.+.|++  ++.+ ++..+...  .++.+.|++....     ++..++.
T Consensus        76 ~~~~~~~----~~~~~~~v~R~~~d~~L~~~a~~~G~~--v~~~-~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~  148 (398)
T TIGR02028        76 DIGRTLK----EHEYIGMLRREVLDSFLRRRAADAGAT--LING-LVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLE  148 (398)
T ss_pred             EeccCCC----CCCceeeeeHHHHHHHHHHHHHHCCcE--EEcc-eEEEEEeccCCCceEEEEEeeccccccCCCccEEE
Confidence            0110000    000112367899999999999999987  7655 47666532  2255777754321     3335799


Q ss_pred             EcEEEEccCCCC
Q 013303          155 FDAVVVCNGHFS  166 (446)
Q Consensus       155 ~d~VVvAtG~~s  166 (446)
                      ++.||.|+|.+|
T Consensus       149 a~~VIgADG~~S  160 (398)
T TIGR02028       149 VDAVIGADGANS  160 (398)
T ss_pred             eCEEEECCCcch
Confidence            999999999655

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.19  E-value=5.2e-11  Score=118.63  Aligned_cols=158  Identities=14%  Similarity=0.125  Sum_probs=88.6

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCC-C-CccCCccCce---------
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR-Y-PVHSSLYKSL---------   69 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~-~-~~~~~~y~~l---------   69 (446)
                      |.+||+||||||+|+++|..|++.|++|+|||+.+..++..............+.|.. . +..-.+++.+         
T Consensus         1 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~   80 (405)
T PRK05714          1 MRADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYS   80 (405)
T ss_pred             CCccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccce
Confidence            5679999999999999999999999999999997632111000000000000111100 0 0000111111         


Q ss_pred             --eecCCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCC
Q 013303           70 --RVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD  147 (446)
Q Consensus        70 --~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~  147 (446)
                        ..-..... ...+|+....   .........++..+.+.|.+.+.+.+++  ++++++|++++..+ +.|+|++.++.
T Consensus        81 ~~~~~~~~~~-~~~~~~~~~~---~~~~~g~~i~~~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~-~~v~v~~~~g~  153 (405)
T PRK05714         81 EMQVWDGSGT-GQIHFSAASV---HAEVLGHIVENRVVQDALLERLHDSDIG--LLANARLEQMRRSG-DDWLLTLADGR  153 (405)
T ss_pred             eEEEEcCCCC-ceEEeccccc---CCCccEEEEEhHHHHHHHHHHHhcCCCE--EEcCCEEEEEEEcC-CeEEEEECCCC
Confidence              11111100 0001111000   0000112245567777777777777776  88999999998776 67888876543


Q ss_pred             CceEEEEEcEEEEccCCCCCCc
Q 013303          148 DVVEEETFDAVVVCNGHFSVPR  169 (446)
Q Consensus       148 ~~~~~~~~d~VVvAtG~~s~p~  169 (446)
                          ++++|.||.|+|.+|..+
T Consensus       154 ----~~~a~~vVgAdG~~S~vR  171 (405)
T PRK05714        154 ----QLRAPLVVAADGANSAVR  171 (405)
T ss_pred             ----EEEeCEEEEecCCCchhH
Confidence                789999999999877543

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=99.18  E-value=1.2e-10  Score=115.23  Aligned_cols=151  Identities=15%  Similarity=0.155  Sum_probs=88.2

Q ss_pred             eEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCc--------eeeeCCCCC--CCCCCCCCCCCCccCCccCceeecC
Q 013303            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG--------SWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNL   73 (446)
Q Consensus         4 ~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG--------~w~~~~~~~--~~~~g~~p~~~~~~~~~y~~l~~~~   73 (446)
                      ||+||||||+|+++|..|++.|++|+|||+.+.++-        .....+...  .+..|+...........+..+....
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~   80 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD   80 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence            799999999999999999999999999999875421        111110000  0011111000000011111111111


Q ss_pred             CCC--CcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-CCCcEEeCeEEEEEEEcCCCceEEEEEeCCCce
Q 013303           74 PRE--LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV  150 (446)
Q Consensus        74 ~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~-l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~  150 (446)
                      +..  .+.+   +....   ........+++.++.+.|.+.+.+.+ +.  ++++++|++++..+ +.+.|+..++.   
T Consensus        81 ~~~~~~~~~---~~~~~---~~~~~~~~i~r~~l~~~L~~~~~~~~~~~--v~~~~~v~~i~~~~-~~~~v~~~~g~---  148 (385)
T TIGR01988        81 GGSFGALHF---DADEI---GLEALGYVVENRVLQQALWERLQEYPNVT--LLCPARVVELPRHS-DHVELTLDDGQ---  148 (385)
T ss_pred             CCCCceEEe---chhhc---CCCccEEEEEcHHHHHHHHHHHHhCCCcE--EecCCeEEEEEecC-CeeEEEECCCC---
Confidence            110  1111   11000   00001123567788888888888776 66  89999999998766 67777776543   


Q ss_pred             EEEEEcEEEEccCCCCC
Q 013303          151 EEETFDAVVVCNGHFSV  167 (446)
Q Consensus       151 ~~~~~d~VVvAtG~~s~  167 (446)
                       ++.+|.||.|+|.+|.
T Consensus       149 -~~~~~~vi~adG~~S~  164 (385)
T TIGR01988       149 -QLRARLLVGADGANSK  164 (385)
T ss_pred             -EEEeeEEEEeCCCCCH
Confidence             6899999999997664

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK06185 hypothetical protein; Provisional

Probab=99.17  E-value=1.4e-10  Score=115.54  Aligned_cols=158  Identities=20%  Similarity=0.243  Sum_probs=86.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcC-----ceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG-----GSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRE   76 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G-----G~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~   76 (446)
                      .+||+|||||++|+++|..|++.|++|+|+|+.+...     ..+......-.+..|......-.....+..+.......
T Consensus         6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~   85 (407)
T PRK06185          6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGGR   85 (407)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECCe
Confidence            5799999999999999999999999999999975431     11110000000001110000000000111111111111


Q ss_pred             CcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCce-EEEEEeCCCceEEEE
Q 013303           77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKW-KVKSRKKDDVVEEET  154 (446)
Q Consensus        77 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~-~v~~~~~~~~~~~~~  154 (446)
                      .....++.-...    ......+.++..+.++|.+.+.+. ++.  +.++++|+++...+ +.. .|.+...++ ..++.
T Consensus        86 ~~~~~~~~~~~~----~~~~~~~v~~~~l~~~L~~~~~~~~~v~--i~~~~~v~~~~~~~-~~v~~v~~~~~~g-~~~i~  157 (407)
T PRK06185         86 TVTLADFSRLPT----PYPYIAMMPQWDFLDFLAEEASAYPNFT--LRMGAEVTGLIEEG-GRVTGVRARTPDG-PGEIR  157 (407)
T ss_pred             EEEecchhhcCC----CCCcEEEeehHHHHHHHHHHHhhCCCcE--EEeCCEEEEEEEeC-CEEEEEEEEcCCC-cEEEE
Confidence            111111110000    001122456778888988888765 666  88999999998765 433 345443222 24789


Q ss_pred             EcEEEEccCCCCC
Q 013303          155 FDAVVVCNGHFSV  167 (446)
Q Consensus       155 ~d~VVvAtG~~s~  167 (446)
                      +|.||.|+|.+|.
T Consensus       158 a~~vI~AdG~~S~  170 (407)
T PRK06185        158 ADLVVGADGRHSR  170 (407)
T ss_pred             eCEEEECCCCchH
Confidence            9999999998764

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=99.17  E-value=2.3e-10  Score=113.32  Aligned_cols=140  Identities=21%  Similarity=0.182  Sum_probs=86.3

Q ss_pred             eEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCC-CCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSET-ESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (446)
Q Consensus         4 ~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~-~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d   82 (446)
                      ||+||||||||+++|..|++.|++|+|+|+.+.+|+.....-.. .....+..+    .....|.....      +.+..
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~------~~~~~   70 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLAD----CVEHVWPDVYE------YRFPK   70 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhh----HHhhcCCCceE------EecCC
Confidence            79999999999999999999999999999988777643221000 000000000    00011111000      00000


Q ss_pred             CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEcc
Q 013303           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN  162 (446)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAt  162 (446)
                      .+...      ........+..+.+++.+.+.+.++.  + +.++|..+....++.|.|++.++.    +++++.||.|+
T Consensus        71 ~~~~~------~~~~~~i~~~~l~~~l~~~~~~~gv~--~-~~~~v~~i~~~~~~~~~v~~~~g~----~~~a~~VI~A~  137 (388)
T TIGR01790        71 QPRKL------GTAYGSVDSTRLHEELLQKCPEGGVL--W-LERKAIHAEADGVALSTVYCAGGQ----RIQARLVIDAR  137 (388)
T ss_pred             cchhc------CCceeEEcHHHHHHHHHHHHHhcCcE--E-EccEEEEEEecCCceeEEEeCCCC----EEEeCEEEECC
Confidence            00000      00111256788999999998888875  5 467888888763367888876543    78999999999


Q ss_pred             CCCC
Q 013303          163 GHFS  166 (446)
Q Consensus       163 G~~s  166 (446)
                      |..+
T Consensus       138 G~~s  141 (388)
T TIGR01790       138 GFGP  141 (388)
T ss_pred             CCch
Confidence            9655

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PLN02463 lycopene beta cyclase

Probab=99.17  E-value=1.2e-10  Score=116.07  Aligned_cols=138  Identities=16%  Similarity=0.156  Sum_probs=85.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc-----CceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV-----GGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRE   76 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~-----GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~   76 (446)
                      .+||+||||||||+++|..|++.|++|+|+|+.+..     .|.|...    ....|...  + + ...|......    
T Consensus        28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~----l~~lgl~~--~-l-~~~w~~~~v~----   95 (447)
T PLN02463         28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDE----FEALGLLD--C-L-DTTWPGAVVY----   95 (447)
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHH----HHHCCcHH--H-H-HhhCCCcEEE----
Confidence            369999999999999999999999999999986532     1222210    00000000  0 0 0011111100    


Q ss_pred             CcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEc
Q 013303           77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD  156 (446)
Q Consensus        77 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d  156 (446)
                         +.+.....     ........++.++.+++.+.+...++.  +. .++|++|+..+ +.+.|+++++.    ++.+|
T Consensus        96 ---~~~~~~~~-----~~~~y~~V~R~~L~~~Ll~~~~~~GV~--~~-~~~V~~I~~~~-~~~~V~~~dG~----~i~A~  159 (447)
T PLN02463         96 ---IDDGKKKD-----LDRPYGRVNRKKLKSKMLERCIANGVQ--FH-QAKVKKVVHEE-SKSLVVCDDGV----KIQAS  159 (447)
T ss_pred             ---EeCCCCcc-----ccCcceeEEHHHHHHHHHHHHhhcCCE--EE-eeEEEEEEEcC-CeEEEEECCCC----EEEcC
Confidence               00000000     001122357788999999988888876  53 57999998766 67888877653    79999


Q ss_pred             EEEEccCCCCC
Q 013303          157 AVVVCNGHFSV  167 (446)
Q Consensus       157 ~VVvAtG~~s~  167 (446)
                      .||.|+|+.+.
T Consensus       160 lVI~AdG~~s~  170 (447)
T PLN02463        160 LVLDATGFSRC  170 (447)
T ss_pred             EEEECcCCCcC
Confidence            99999997543

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=99.17  E-value=1.2e-10  Score=115.39  Aligned_cols=153  Identities=18%  Similarity=0.243  Sum_probs=88.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcC----ce----eeeCCCCC--CCCCCCCCCCCCccCCccCceee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG----GS----WIYTSETE--SDPLGVDPNRYPVHSSLYKSLRV   71 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G----G~----w~~~~~~~--~~~~g~~p~~~~~~~~~y~~l~~   71 (446)
                      ++||+||||||+|+++|..|++.|++|+|+|+.+.+.    +.    ....+...  .+..|.-+.........+..+..
T Consensus         6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~   85 (392)
T PRK08773          6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMRV   85 (392)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEEE
Confidence            4799999999999999999999999999999976431    00    00000000  00011110000000011111111


Q ss_pred             cCC--CCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCc
Q 013303           72 NLP--RELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV  149 (446)
Q Consensus        72 ~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~  149 (446)
                      ...  .....|.......      .......++..+.+.|.+.+++.++.  +.++++|++++..+ +.++|++.++.  
T Consensus        86 ~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~l~~~L~~~~~~~gv~--i~~~~~v~~i~~~~-~~v~v~~~~g~--  154 (392)
T PRK08773         86 WDAGGGGELGFDADTLGR------EQLGWIVENDLLVDRLWAALHAAGVQ--LHCPARVVALEQDA-DRVRLRLDDGR--  154 (392)
T ss_pred             EeCCCCceEEechhccCC------CcCEEEEEhHHHHHHHHHHHHhCCCE--EEcCCeEEEEEecC-CeEEEEECCCC--
Confidence            000  0011111000000      00112245678888888888888887  89999999998766 66777765543  


Q ss_pred             eEEEEEcEEEEccCCCCC
Q 013303          150 VEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       150 ~~~~~~d~VVvAtG~~s~  167 (446)
                        ++.+|.||.|+|.++.
T Consensus       155 --~~~a~~vV~AdG~~S~  170 (392)
T PRK08773        155 --RLEAALAIAADGAAST  170 (392)
T ss_pred             --EEEeCEEEEecCCCch
Confidence              7899999999997663

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=99.16  E-value=2.2e-10  Score=99.01  Aligned_cols=136  Identities=20%  Similarity=0.224  Sum_probs=85.6

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCc-eeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCC-ccc
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG-SWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPREL-MGF   80 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG-~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~-~~~   80 (446)
                      .||+|||||||||+||++|++.|++|+|||++-.+|| .|.-.                   -+++.+....|... ..-
T Consensus        31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GG-------------------mlf~~iVv~~~a~~iL~e   91 (262)
T COG1635          31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGG-------------------MLFNKIVVREEADEILDE   91 (262)
T ss_pred             ccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccc-------------------cccceeeecchHHHHHHH
Confidence            5999999999999999999999999999999988865 55421                   12333333322211 111


Q ss_pred             CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCC-------ceEEEEEeCC-CceEE
Q 013303           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN-------KWKVKSRKKD-DVVEE  152 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~-------~~~v~~~~~~-~~~~~  152 (446)
                      -..|+.+.     .+.-.-.+..++..-|..-+-+.+..  |...+.|+.+--.++.       .|+.....+. -+...
T Consensus        92 ~gI~ye~~-----e~g~~v~ds~e~~skl~~~a~~aGak--i~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~  164 (262)
T COG1635          92 FGIRYEEE-----EDGYYVADSAEFASKLAARALDAGAK--IFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLT  164 (262)
T ss_pred             hCCcceec-----CCceEEecHHHHHHHHHHHHHhcCce--eeecceEEEEEEecCCceEEEEEecchhhhcccccCcce
Confidence            11222221     01112234567777777777777866  7778888887544421       2443332221 13457


Q ss_pred             EEEcEEEEccCC
Q 013303          153 ETFDAVVVCNGH  164 (446)
Q Consensus       153 ~~~d~VVvAtG~  164 (446)
                      +++++||-||||
T Consensus       165 i~a~~VvDaTGH  176 (262)
T COG1635         165 IRAKAVVDATGH  176 (262)
T ss_pred             eeEEEEEeCCCC
Confidence            999999999998

>PRK10015 oxidoreductase; Provisional

Probab=99.16  E-value=4.5e-10  Score=112.19  Aligned_cols=153  Identities=18%  Similarity=0.149  Sum_probs=84.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCC-CCCCCCCCC---CCccCCccC-cee--ecCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETES-DPLGVDPNR---YPVHSSLYK-SLR--VNLP   74 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~-~~~g~~p~~---~~~~~~~y~-~l~--~~~~   74 (446)
                      ++||+||||||||++||..|++.|++|+|+|+.+.+|..-........ ....+.|..   ..+...... .+.  ....
T Consensus         5 ~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~   84 (429)
T PRK10015          5 KFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEES   84 (429)
T ss_pred             ccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCCC
Confidence            379999999999999999999999999999998766432110000000 000000000   000000000 000  0000


Q ss_pred             CCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEE
Q 013303           75 RELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET  154 (446)
Q Consensus        75 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~  154 (446)
                      ...+.+..-+...     .........+..+.++|.+.+++.|+.  ++.+++|+.+...+ +.+.....+ .   .++.
T Consensus        85 ~~~~~~~~~~~~~-----~~~~~~~v~R~~fd~~L~~~a~~~Gv~--i~~~~~V~~i~~~~-~~v~~v~~~-~---~~i~  152 (429)
T PRK10015         85 AVTLDFHREQPDV-----PQHASYTVLRNRLDPWLMEQAEQAGAQ--FIPGVRVDALVREG-NKVTGVQAG-D---DILE  152 (429)
T ss_pred             ceEeecccCCCCC-----CCcCceEeehhHHHHHHHHHHHHcCCE--EECCcEEEEEEEeC-CEEEEEEeC-C---eEEE
Confidence            0001110000000     000112246788889999999998987  89999999988654 445433222 2   3689


Q ss_pred             EcEEEEccCCCC
Q 013303          155 FDAVVVCNGHFS  166 (446)
Q Consensus       155 ~d~VVvAtG~~s  166 (446)
                      +|.||+|+|..+
T Consensus       153 A~~VI~AdG~~s  164 (429)
T PRK10015        153 ANVVILADGVNS  164 (429)
T ss_pred             CCEEEEccCcch
Confidence            999999999644

>PRK11445 putative oxidoreductase; Provisional

Probab=99.16  E-value=3e-10  Score=110.75  Aligned_cols=151  Identities=16%  Similarity=0.137  Sum_probs=84.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCC---------CCCCCCCCCCCccCCccCceeec
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETES---------DPLGVDPNRYPVHSSLYKSLRVN   72 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~---------~~~g~~p~~~~~~~~~y~~l~~~   72 (446)
                      ++||+||||||||+++|..|++. ++|+|+|+.+..+..-...+....         +..|...............+.+ 
T Consensus         1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~-   78 (351)
T PRK11445          1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKT-   78 (351)
T ss_pred             CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeE-
Confidence            47999999999999999999999 999999998643200000000000         0011100000000000000000 


Q ss_pred             CCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEE
Q 013303           73 LPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEE  152 (446)
Q Consensus        73 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~  152 (446)
                           +.+.+ +....    ........++.++.+.|.+.+ ..+++  ++++++|..++..+ +.|.|++.. ++...+
T Consensus        79 -----~~~~~-~~~~~----~~~~~~~i~R~~~~~~L~~~~-~~gv~--v~~~~~v~~i~~~~-~~~~v~~~~-~g~~~~  143 (351)
T PRK11445         79 -----IDLAN-SLTRN----YQRSYINIDRHKFDLWLKSLI-PASVE--VYHNSLCRKIWRED-DGYHVIFRA-DGWEQH  143 (351)
T ss_pred             -----ecccc-cchhh----cCCCcccccHHHHHHHHHHHH-hcCCE--EEcCCEEEEEEEcC-CEEEEEEec-CCcEEE
Confidence                 00000 00000    000112267788888888743 45666  89999999998776 678887643 222346


Q ss_pred             EEEcEEEEccCCCCCCc
Q 013303          153 ETFDAVVVCNGHFSVPR  169 (446)
Q Consensus       153 ~~~d~VVvAtG~~s~p~  169 (446)
                      +++|.||.|+|..|..+
T Consensus       144 i~a~~vV~AdG~~S~vr  160 (351)
T PRK11445        144 ITARYLVGADGANSMVR  160 (351)
T ss_pred             EEeCEEEECCCCCcHHh
Confidence            89999999999766543

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.16  E-value=1.9e-10  Score=114.98  Aligned_cols=157  Identities=18%  Similarity=0.215  Sum_probs=87.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc-----CceeeeCCCCC--CCCCCCCCCCCCccCCccCceeecC-
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV-----GGSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNL-   73 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~-----GG~w~~~~~~~--~~~~g~~p~~~~~~~~~y~~l~~~~-   73 (446)
                      .+||+||||||+|+++|..|++.|++|+|||+.+..     |......+..-  ....|+.... .-.......+.... 
T Consensus        18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l-~~~~~~~~~~~~~~~   96 (415)
T PRK07364         18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKI-LPQIGKFRQIRLSDA   96 (415)
T ss_pred             ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhh-HhhcCCccEEEEEeC
Confidence            479999999999999999999999999999998754     21111111000  0011110000 00000011110000 


Q ss_pred             -CCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceE
Q 013303           74 -PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVE  151 (446)
Q Consensus        74 -~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~  151 (446)
                       ......+.......      ........+..+.+.|.+.+.+. ++.  ++++++|++++..+ +.+.|++.++. +..
T Consensus        97 ~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~L~~~~~~~~~v~--i~~~~~v~~v~~~~-~~~~v~~~~~~-~~~  166 (415)
T PRK07364         97 DYPGVVKFQPTDLGT------EALGYVGEHQVLLEALQEFLQSCPNIT--WLCPAEVVSVEYQQ-DAATVTLEIEG-KQQ  166 (415)
T ss_pred             CCCceeeeccccCCC------CccEEEEecHHHHHHHHHHHhcCCCcE--EEcCCeeEEEEecC-CeeEEEEccCC-cce
Confidence             00111111000000      00111123456777777777665 566  88999999998766 66788776432 224


Q ss_pred             EEEEcEEEEccCCCCCCc
Q 013303          152 EETFDAVVVCNGHFSVPR  169 (446)
Q Consensus       152 ~~~~d~VVvAtG~~s~p~  169 (446)
                      ++++|.||.|+|.+|.-+
T Consensus       167 ~i~adlvIgADG~~S~vR  184 (415)
T PRK07364        167 TLQSKLVVAADGARSPIR  184 (415)
T ss_pred             EEeeeEEEEeCCCCchhH
Confidence            799999999999877543

>PRK08163 salicylate hydroxylase; Provisional

Probab=99.15  E-value=1.7e-10  Score=114.55  Aligned_cols=159  Identities=19%  Similarity=0.187  Sum_probs=88.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCce---eeeCCCCC--CCCCCCCCCCCCccCC-ccCceeecCCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS---WIYTSETE--SDPLGVDPNRYPVHSS-LYKSLRVNLPR   75 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~---w~~~~~~~--~~~~g~~p~~~~~~~~-~y~~l~~~~~~   75 (446)
                      .+||+|||||++||++|..|++.|++|+|||+.+.++..   ....+..-  .+..|+.+.  +.... ....+......
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~--~~~~~~~~~~~~~~~~~   81 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEA--ARQRAVFTDHLTMMDAV   81 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHH--HHhhccCCcceEEEeCC
Confidence            569999999999999999999999999999998765311   10000000  000111000  00000 00111100000


Q ss_pred             CCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-CCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEE
Q 013303           76 ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET  154 (446)
Q Consensus        76 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~-l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~  154 (446)
                      ..-.+..+++...............++.++.+.|.+.+.+.+ +.  ++++++|+++...+ +.++|++.++.    ++.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~--~~~~~~v~~i~~~~-~~v~v~~~~g~----~~~  154 (396)
T PRK08163         82 DAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVE--FRTSTHVVGIEQDG-DGVTVFDQQGN----RWT  154 (396)
T ss_pred             CCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcE--EEeCCEEEEEecCC-CceEEEEcCCC----EEe
Confidence            000000011100000000001112467888888888877664 55  88999999998765 66777765543    689


Q ss_pred             EcEEEEccCCCCCCc
Q 013303          155 FDAVVVCNGHFSVPR  169 (446)
Q Consensus       155 ~d~VVvAtG~~s~p~  169 (446)
                      +|.||.|+|.+|..+
T Consensus       155 ad~vV~AdG~~S~~r  169 (396)
T PRK08163        155 GDALIGCDGVKSVVR  169 (396)
T ss_pred             cCEEEECCCcChHHH
Confidence            999999999876554

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=99.15  E-value=1.5e-10  Score=112.86  Aligned_cols=157  Identities=24%  Similarity=0.201  Sum_probs=88.0

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcC----ceeeeCCCCC-CCCCCCCCCCCCcc-C--CccCceeecCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG----GSWIYTSETE-SDPLGVDPNRYPVH-S--SLYKSLRVNLP   74 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G----G~w~~~~~~~-~~~~g~~p~~~~~~-~--~~y~~l~~~~~   74 (446)
                      +||+||||||+|+++|..|++.|++|+|||+.+.+.    |......... ....|...  .+.. .  ...........
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~--~~~~~~~~~~~~~~~~~~~   79 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLD--EILARGSPHEVMRIFFYDG   79 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHH--HHHHHSEEECEEEEEEEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchh--hhhhhcccccceeeEeecc
Confidence            689999999999999999999999999999976541    1111000000 00000000  0000 0  00000000000


Q ss_pred             -CC-------CcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC
Q 013303           75 -RE-------LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK  146 (446)
Q Consensus        75 -~~-------~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~  146 (446)
                       ..       .....++....     .........+.++.+.|.+.+++.++.  ++++++|+++..+. +..++.+...
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~r~~l~~~L~~~~~~~gv~--i~~~~~v~~~~~d~-~~~~~~~~~~  151 (356)
T PF01494_consen   80 ISDSRIWVENPQIREDMEIDT-----KGPYGHVIDRPELDRALREEAEERGVD--IRFGTRVVSIEQDD-DGVTVVVRDG  151 (356)
T ss_dssp             TTTSEEEEEEEEEEEECHSTS-----GSSCEEEEEHHHHHHHHHHHHHHHTEE--EEESEEEEEEEEET-TEEEEEEEET
T ss_pred             cCCccceeeecccceeeeccc-----cCCcchhhhHHHHHHhhhhhhhhhhhh--heeeeecccccccc-cccccccccc
Confidence             00       00000000000     001122346788999999999999977  99999999998877 6666666665


Q ss_pred             -CCceEEEEEcEEEEccCCCCCCc
Q 013303          147 -DDVVEEETFDAVVVCNGHFSVPR  169 (446)
Q Consensus       147 -~~~~~~~~~d~VVvAtG~~s~p~  169 (446)
                       ++..+++++|.||.|.|.+|.-+
T Consensus       152 ~~g~~~~i~adlvVgADG~~S~vR  175 (356)
T PF01494_consen  152 EDGEEETIEADLVVGADGAHSKVR  175 (356)
T ss_dssp             CTCEEEEEEESEEEE-SGTT-HHH
T ss_pred             cCCceeEEEEeeeecccCcccchh
Confidence             35556899999999999877544

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK07045 putative monooxygenase; Reviewed

Probab=99.14  E-value=2.8e-10  Score=112.69  Aligned_cols=157  Identities=18%  Similarity=0.221  Sum_probs=86.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc---CceeeeCCCCC--CCCCCCCCCCCCccCCccCceeecCCCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV---GGSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPRE   76 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~---GG~w~~~~~~~--~~~~g~~p~~~~~~~~~y~~l~~~~~~~   76 (446)
                      ++||+||||||+|+++|..|++.|++|+|+|+.+.+   ++.-...+...  .+..|+..............+.......
T Consensus         5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~   84 (388)
T PRK07045          5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKE   84 (388)
T ss_pred             eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCc
Confidence            369999999999999999999999999999998754   11100100000  0011111000000000111111111111


Q ss_pred             CcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCc-eEEEEEeCCCceEEEE
Q 013303           77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNK-WKVKSRKKDDVVEEET  154 (446)
Q Consensus        77 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~~~~~~~~~~  154 (446)
                      ...  .+++...   .........++.++.+.|.+.+... +++  ++++++|+.++..+++. +.|+..++.    ++.
T Consensus        85 ~~~--~~~~~~~---~~~g~~~~i~r~~l~~~L~~~~~~~~gv~--i~~~~~v~~i~~~~~~~~~~v~~~~g~----~~~  153 (388)
T PRK07045         85 LIA--SLDYRSA---SALGYFILIPCEQLRRLLLAKLDGLPNVR--LRFETSIERIERDADGTVTSVTLSDGE----RVA  153 (388)
T ss_pred             EEE--EecCCcc---ccCCceEEccHHHHHHHHHHHHhcCCCee--EEeCCEEEEEEECCCCcEEEEEeCCCC----EEE
Confidence            111  1111110   0001112245677888887776543 565  99999999998866342 456665443    789


Q ss_pred             EcEEEEccCCCCCCc
Q 013303          155 FDAVVVCNGHFSVPR  169 (446)
Q Consensus       155 ~d~VVvAtG~~s~p~  169 (446)
                      +|.||.|.|.+|.-+
T Consensus       154 ~~~vIgADG~~S~vR  168 (388)
T PRK07045        154 PTVLVGADGARSMIR  168 (388)
T ss_pred             CCEEEECCCCChHHH
Confidence            999999999877544

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=99.14  E-value=1.6e-10  Score=102.88  Aligned_cols=149  Identities=24%  Similarity=0.330  Sum_probs=87.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCC-CCCCC---CCCCC-C---ccCCccCceeecC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETES-DPLGV---DPNRY-P---VHSSLYKSLRVNL   73 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~-~~~g~---~p~~~-~---~~~~~y~~l~~~~   73 (446)
                      +.+|+|||+|++|++||..|+..|.+|+||||+..+||........+. -..|.   +|.-. +   ++.-.-+.+..--
T Consensus         1 ~~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W   80 (331)
T COG3380           1 MPSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVW   80 (331)
T ss_pred             CCcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeec
Confidence            357999999999999999999999999999999999987654321110 00111   11100 0   0000001111111


Q ss_pred             CCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEE
Q 013303           74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE  153 (446)
Q Consensus        74 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~  153 (446)
                      ...+.+|.+-..++...  ......-|....+.+||..     ++.  |+++++|+.|.+.+ +.|+++.+++.   ...
T Consensus        81 ~~~~~~~~~~~~~~~~d--~~pyvg~pgmsalak~LAt-----dL~--V~~~~rVt~v~~~~-~~W~l~~~~g~---~~~  147 (331)
T COG3380          81 TPAVWTFTGDGSPPRGD--EDPYVGEPGMSALAKFLAT-----DLT--VVLETRVTEVARTD-NDWTLHTDDGT---RHT  147 (331)
T ss_pred             cccccccccCCCCCCCC--CCccccCcchHHHHHHHhc-----cch--hhhhhhhhhheecC-CeeEEEecCCC---ccc
Confidence            11122222111111100  0002223455666665544     455  88999999999886 89999997765   367


Q ss_pred             EEcEEEEccC
Q 013303          154 TFDAVVVCNG  163 (446)
Q Consensus       154 ~~d~VVvAtG  163 (446)
                      .||.||||.=
T Consensus       148 ~~d~vvla~P  157 (331)
T COG3380         148 QFDDVVLAIP  157 (331)
T ss_pred             ccceEEEecC
Confidence            8999999976

>TIGR00275 flavoprotein, HI0933 family

Probab=99.14  E-value=1.3e-10  Score=114.99  Aligned_cols=150  Identities=25%  Similarity=0.366  Sum_probs=89.5

Q ss_pred             EEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCC-CCCCCC--CCc---cCCccCceeecCCCCCcc
Q 013303            6 AVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPL-GVDPNR--YPV---HSSLYKSLRVNLPRELMG   79 (446)
Q Consensus         6 ~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~-g~~p~~--~~~---~~~~y~~l~~~~~~~~~~   79 (446)
                      +|||||+|||+||..|++.|++|+|+|+++.+|+.+........... ......  ...   ...++..+....+.+.+.
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~   80 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID   80 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence            69999999999999999999999999999988876543322110000 000000  000   000000010001111111


Q ss_pred             cC---CCCCCcCCCCCCCCCCCCC---CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEE
Q 013303           80 FQ---AYPFVARNYEGSVDLRRYP---GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE  153 (446)
Q Consensus        80 ~~---d~~~~~~~~~~~~~~~~~~---~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~  153 (446)
                      |-   ..++...     .....||   ...++.+.+.+.+++.++.  ++++++|+++...+ +.|.|++. +    .++
T Consensus        81 ~~~~~Gv~~~~~-----~~g~~~p~~~~a~~v~~~L~~~l~~~gv~--i~~~~~V~~i~~~~-~~~~v~~~-~----~~i  147 (400)
T TIGR00275        81 FFESLGLELKVE-----EDGRVFPCSDSAADVLDALLNELKELGVE--ILTNSKVKSIKKDD-NGFGVETS-G----GEY  147 (400)
T ss_pred             HHHHcCCeeEEe-----cCCEeECCCCCHHHHHHHHHHHHHHCCCE--EEeCCEEEEEEecC-CeEEEEEC-C----cEE
Confidence            10   0111110     0122333   4578999999999999887  99999999998765 66777662 2    268


Q ss_pred             EEcEEEEccCCCCCC
Q 013303          154 TFDAVVVCNGHFSVP  168 (446)
Q Consensus       154 ~~d~VVvAtG~~s~p  168 (446)
                      .+|.||+|+|.++.|
T Consensus       148 ~ad~VIlAtG~~s~p  162 (400)
T TIGR00275       148 EADKVILATGGLSYP  162 (400)
T ss_pred             EcCEEEECCCCcccC
Confidence            999999999986654

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK09126 hypothetical protein; Provisional

Probab=99.13  E-value=6.4e-10  Score=110.28  Aligned_cols=152  Identities=22%  Similarity=0.229  Sum_probs=83.6

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcC-------c-eeeeCCCCC--CCCCCCCCCCCCccC--CccCc
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG-------G-SWIYTSETE--SDPLGVDPNRYPVHS--SLYKS   68 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G-------G-~w~~~~~~~--~~~~g~~p~~~~~~~--~~y~~   68 (446)
                      |.+||+||||||+|+++|..|++.|++|+|+|+.+.+.       | .....+...  .+..|....  +...  .....
T Consensus         2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~--~~~~~~~~~~~   79 (392)
T PRK09126          2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDR--IPEDEISPLRD   79 (392)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhh--hccccCCccce
Confidence            46799999999999999999999999999999986531       1 000000000  000011000  0000  00011


Q ss_pred             eeecCCC--CCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHH-HhCCCCcEEeCeEEEEEEEcCCCceEEEEEe
Q 013303           69 LRVNLPR--ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAR-EFGVDQVVRLHTEVLNARLVESNKWKVKSRK  145 (446)
Q Consensus        69 l~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~-~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~  145 (446)
                      .......  ..+.+   +....   .........++..+.+.|.+.+. ..++.  ++++++|++++..+ +.+.|++.+
T Consensus        80 ~~~~~~~~~~~~~~---~~~~~---~~~~~g~~~~~~~l~~~l~~~~~~~~g~~--i~~~~~v~~~~~~~-~~~~v~~~~  150 (392)
T PRK09126         80 AKVLNGRSPFALTF---DARGR---GADALGYLVPNHLIRRAAYEAVSQQDGIE--LLTGTRVTAVRTDD-DGAQVTLAN  150 (392)
T ss_pred             EEEEcCCCCceeEe---ehhhc---CCCcceEEEeHHHHHHHHHHHHhhCCCcE--EEcCCeEEEEEEcC-CeEEEEEcC
Confidence            1100000  01111   10000   00001112345566666655553 34676  99999999998765 667787765


Q ss_pred             CCCceEEEEEcEEEEccCCCCC
Q 013303          146 KDDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       146 ~~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      +.    ++.+|.||.|+|.+|.
T Consensus       151 g~----~~~a~~vI~AdG~~S~  168 (392)
T PRK09126        151 GR----RLTARLLVAADSRFSA  168 (392)
T ss_pred             CC----EEEeCEEEEeCCCCch
Confidence            43    7999999999996554

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=99.12  E-value=4.7e-10  Score=110.91  Aligned_cols=157  Identities=23%  Similarity=0.233  Sum_probs=93.3

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeC-CCc---CceeeeCCCCC--CCCCCCCCCCCCccCCccCceeecCC
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG-EQV---GGSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLP   74 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~-~~~---GG~w~~~~~~~--~~~~g~~p~~~~~~~~~y~~l~~~~~   74 (446)
                      +++||+||||||+||++|..|++.|++|+|||+. ...   |-.....+..-  ....|+.+.-.......+........
T Consensus         1 ~~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~   80 (387)
T COG0654           1 KMLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDG   80 (387)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecC
Confidence            4689999999999999999999999999999997 221   10000000000  01122210000001112222222111


Q ss_pred             CC-CcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-CCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEE
Q 013303           75 RE-LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEE  152 (446)
Q Consensus        75 ~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~-l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~  152 (446)
                      .. ...+......      ........+..++...|.+.+...+ ++  ++++++|+.++..+ +..++++.. +++  +
T Consensus        81 ~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~L~~~~~~~~~v~--~~~~~~v~~~~~~~-~~v~v~l~~-dG~--~  148 (387)
T COG0654          81 GRRLLIFDAAELG------RGALGYVVPRSDLLNALLEAARALPNVT--LRFGAEVEAVEQDG-DGVTVTLSF-DGE--T  148 (387)
T ss_pred             CceeEEecccccC------CCcceEEeEhHHHHHHHHHHHhhCCCcE--EEcCceEEEEEEcC-CceEEEEcC-CCc--E
Confidence            11 1111111110      0012233577899999999998876 66  99999999999887 667788873 322  8


Q ss_pred             EEEcEEEEccCCCCCCc
Q 013303          153 ETFDAVVVCNGHFSVPR  169 (446)
Q Consensus       153 ~~~d~VVvAtG~~s~p~  169 (446)
                      +.+|.||.|.|.+|.-+
T Consensus       149 ~~a~llVgADG~~S~vR  165 (387)
T COG0654         149 LDADLLVGADGANSAVR  165 (387)
T ss_pred             EecCEEEECCCCchHHH
Confidence            99999999999877543

>PRK08013 oxidoreductase; Provisional

Probab=99.12  E-value=7.6e-10  Score=109.99  Aligned_cols=153  Identities=20%  Similarity=0.108  Sum_probs=89.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeC--CCCC---------CCCCCCCCCCCCcc--CCccCc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT--SETE---------SDPLGVDPNRYPVH--SSLYKS   68 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~--~~~~---------~~~~g~~p~~~~~~--~~~y~~   68 (446)
                      .+||+||||||+|+++|..|++.|++|+|+|+.+.+.-.....  .+..         .+..|+-..  +..  ...+..
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~--~~~~~~~~~~~   80 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQD--ILARRASCYHG   80 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchh--hhhhcCccccE
Confidence            4699999999999999999999999999999987532100000  0000         000111000  000  011111


Q ss_pred             eeecCCC--CCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCceEEEEEe
Q 013303           69 LRVNLPR--ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRK  145 (446)
Q Consensus        69 l~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~v~~~~  145 (446)
                      +....+.  ..+.+.......      .......++..+.+.|.+.+... +++  ++++++|++++..+ +..+|+..+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~r~~l~~~L~~~~~~~~~v~--i~~~~~v~~i~~~~-~~v~v~~~~  151 (400)
T PRK08013         81 MEVWDKDSFGRIAFDDQSMGY------SHLGHIIENSVIHYALWQKAQQSSDIT--LLAPAELQQVAWGE-NEAFLTLKD  151 (400)
T ss_pred             EEEEeCCCCceEEEcccccCC------CccEEEEEhHHHHHHHHHHHhcCCCcE--EEcCCeeEEEEecC-CeEEEEEcC
Confidence            1111111  001111000000      00112356778888888888775 566  89999999998766 667777765


Q ss_pred             CCCceEEEEEcEEEEccCCCCCCc
Q 013303          146 KDDVVEEETFDAVVVCNGHFSVPR  169 (446)
Q Consensus       146 ~~~~~~~~~~d~VVvAtG~~s~p~  169 (446)
                      +.    ++++|.||.|.|.+|.-+
T Consensus       152 g~----~i~a~lvVgADG~~S~vR  171 (400)
T PRK08013        152 GS----MLTARLVVGADGANSWLR  171 (400)
T ss_pred             CC----EEEeeEEEEeCCCCcHHH
Confidence            43    799999999999877544

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.12  E-value=2.2e-10  Score=114.01  Aligned_cols=157  Identities=16%  Similarity=0.137  Sum_probs=88.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCC--CcEEEEeeCCCcCc-----eeeeCCCC-C-CCCCCCCCCCCCccCCccCceeec
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGG-----SWIYTSET-E-SDPLGVDPNRYPVHSSLYKSLRVN   72 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g--~~v~v~e~~~~~GG-----~w~~~~~~-~-~~~~g~~p~~~~~~~~~y~~l~~~   72 (446)
                      ++||+||||||+|+++|..|++.|  ++|+|||+.+....     .....+.. . .+..|+..... ........+...
T Consensus         1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~-~~~~~~~~~~~~   79 (403)
T PRK07333          1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIA-PEAQPITDMVIT   79 (403)
T ss_pred             CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhh-hhcCcccEEEEE
Confidence            479999999999999999999985  99999999764210     00000000 0 00011100000 000001111110


Q ss_pred             CCC--CCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCce
Q 013303           73 LPR--ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV  150 (446)
Q Consensus        73 ~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~  150 (446)
                      ...  .......+.+.... ..........++..+.+.|.+.+.+.++.  ++++++|++++..+ +.+.|++.++.   
T Consensus        80 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~-~~v~v~~~~g~---  152 (403)
T PRK07333         80 DSRTSDPVRPVFLTFEGEV-EPGEPFAHMVENRVLINALRKRAEALGID--LREATSVTDFETRD-EGVTVTLSDGS---  152 (403)
T ss_pred             eCCCCCCCccceEEecccc-cCCCccEEEeEhHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEcC-CEEEEEECCCC---
Confidence            000  00000000110000 00000112357789999999999888887  99999999998766 66777765543   


Q ss_pred             EEEEEcEEEEccCCCCC
Q 013303          151 EEETFDAVVVCNGHFSV  167 (446)
Q Consensus       151 ~~~~~d~VVvAtG~~s~  167 (446)
                       ++.+|.||.|+|.+|.
T Consensus       153 -~~~ad~vI~AdG~~S~  168 (403)
T PRK07333        153 -VLEARLLVAADGARSK  168 (403)
T ss_pred             -EEEeCEEEEcCCCChH
Confidence             6899999999996554

>PRK06184 hypothetical protein; Provisional

Probab=99.12  E-value=1.4e-09  Score=111.31  Aligned_cols=161  Identities=20%  Similarity=0.197  Sum_probs=88.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceee---eCCCC-C-CCCCCCCCCCCCc-cCCccCceeecCCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI---YTSET-E-SDPLGVDPNRYPV-HSSLYKSLRVNLPR   75 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~---~~~~~-~-~~~~g~~p~~~~~-~~~~y~~l~~~~~~   75 (446)
                      ..||+||||||+||++|..|++.|++|+|||+.+.+...-.   ..++. . ....|....  +. ....+.......+.
T Consensus         3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~--l~~~~~~~~~~~~~~~~   80 (502)
T PRK06184          3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDR--VVAAGGLYPPMRIYRDD   80 (502)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHH--HHhcCccccceeEEeCC
Confidence            57999999999999999999999999999999865421000   00000 0 000111000  00 00001111100000


Q ss_pred             C-CcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEE
Q 013303           76 E-LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET  154 (446)
Q Consensus        76 ~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~  154 (446)
                      . ........................+...+.+.|.+.+.+.++.  ++++++|++++..+ +.+++++....+ ..+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~--i~~~~~v~~i~~~~-~~v~v~~~~~~~-~~~i~  156 (502)
T PRK06184         81 GSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHR--VEFGCELVGFEQDA-DGVTARVAGPAG-EETVR  156 (502)
T ss_pred             ceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCE--EEeCcEEEEEEEcC-CcEEEEEEeCCC-eEEEE
Confidence            0 0000000000000000000112234566777888888888877  99999999998776 667777644222 34799


Q ss_pred             EcEEEEccCCCCCC
Q 013303          155 FDAVVVCNGHFSVP  168 (446)
Q Consensus       155 ~d~VVvAtG~~s~p  168 (446)
                      +|+||.|+|.+|.-
T Consensus       157 a~~vVgADG~~S~v  170 (502)
T PRK06184        157 ARYLVGADGGRSFV  170 (502)
T ss_pred             eCEEEECCCCchHH
Confidence            99999999987643

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=99.12  E-value=5.7e-10  Score=109.61  Aligned_cols=134  Identities=22%  Similarity=0.309  Sum_probs=87.7

Q ss_pred             eEEEECcChHHHHHHHHH--HHCCCcEEEEeeCCCc--Cc--eeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCC
Q 013303            4 HVAVIGAGAAGLVVGHEL--LREGHTVVVYEKGEQV--GG--SWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPREL   77 (446)
Q Consensus         4 ~V~IIGaG~aGl~aA~~l--~~~g~~v~v~e~~~~~--GG--~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~   77 (446)
                      ||+||||||||+++|.+|  ++.|.+|+|+|+....  ..  +|.+.....    +  + ........|+......+...
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~----~--~-~~~~v~~~w~~~~v~~~~~~   73 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDL----G--P-LDSLVSHRWSGWRVYFPDGS   73 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccc----c--c-hHHHHheecCceEEEeCCCc
Confidence            799999999999999999  7779999999998766  22  333321100    0  0 00011223333332222222


Q ss_pred             cccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcE
Q 013303           78 MGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA  157 (446)
Q Consensus        78 ~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~  157 (446)
                      ....+++            .....+..+.+++.+.+...+ .  +.++++|.+|+..+ +.+.|++.++.    +++++.
T Consensus        74 ~~~~~~~------------Y~~i~~~~f~~~l~~~~~~~~-~--~~~~~~V~~i~~~~-~~~~v~~~~g~----~i~a~~  133 (374)
T PF05834_consen   74 RILIDYP------------YCMIDRADFYEFLLERAAAGG-V--IRLNARVTSIEETG-DGVLVVLADGR----TIRARV  133 (374)
T ss_pred             eEEcccc------------eEEEEHHHHHHHHHHHhhhCC-e--EEEccEEEEEEecC-ceEEEEECCCC----EEEeeE
Confidence            1111111            123577899999988888444 3  78899999999887 56777777765    899999


Q ss_pred             EEEccCC
Q 013303          158 VVVCNGH  164 (446)
Q Consensus       158 VVvAtG~  164 (446)
                      ||-|+|.
T Consensus       134 VvDa~g~  140 (374)
T PF05834_consen  134 VVDARGP  140 (374)
T ss_pred             EEECCCc
Confidence            9999994

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=99.11  E-value=7.1e-10  Score=109.83  Aligned_cols=151  Identities=18%  Similarity=0.107  Sum_probs=85.6

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCc---eeeeC-----CCCC--CCCCCCCCCCCCccCC--ccCc
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG---SWIYT-----SETE--SDPLGVDPNRYPVHSS--LYKS   68 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG---~w~~~-----~~~~--~~~~g~~p~~~~~~~~--~y~~   68 (446)
                      |..||+||||||+|+++|..|++.|++|+|+|+.+.+..   .|...     +...  .+..|....  +....  ....
T Consensus         4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~--~~~~~~~~~~~   81 (388)
T PRK07608          4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQA--LDAARLAPVYD   81 (388)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhh--hhhhcCCcceE
Confidence            467999999999999999999999999999999876421   11100     0000  000010000  00000  0000


Q ss_pred             eeecCCC-CCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-CCCcEEeCeEEEEEEEcCCCceEEEEEeC
Q 013303           69 LRVNLPR-ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRKK  146 (446)
Q Consensus        69 l~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~-l~~~i~~~~~V~~v~~~~~~~~~v~~~~~  146 (446)
                      +...... ..+.+..+....      ........+..+.+.|.+.+++.+ +.  +. +++|+++...+ +.+.|++.++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~~l~~~L~~~~~~~~~v~--~~-~~~v~~i~~~~-~~~~v~~~~g  151 (388)
T PRK07608         82 MRVFGDAHARLHFSAYQAGV------PQLAWIVESSLIERALWAALRFQPNLT--WF-PARAQGLEVDP-DAATLTLADG  151 (388)
T ss_pred             EEEEECCCceeEeeccccCC------CCCEEEEEhHHHHHHHHHHHHhCCCcE--EE-cceeEEEEecC-CeEEEEECCC
Confidence            1000000 000110000000      000112356788888888888776 55  55 88999998765 6688777654


Q ss_pred             CCceEEEEEcEEEEccCCCCC
Q 013303          147 DDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       147 ~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      .    ++.+|.||.|+|.+|.
T Consensus       152 ~----~~~a~~vI~adG~~S~  168 (388)
T PRK07608        152 Q----VLRADLVVGADGAHSW  168 (388)
T ss_pred             C----EEEeeEEEEeCCCCch
Confidence            3    6899999999997664

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=99.11  E-value=6.8e-10  Score=111.24  Aligned_cols=150  Identities=15%  Similarity=0.147  Sum_probs=85.9

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc----CceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCC
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV----GGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRE   76 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~----GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~   76 (446)
                      |++||+||||||||+++|..|++.|++|+|+|+....    ||.....   ..+..+....  .+. .....++...|..
T Consensus        38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~---~l~~lgl~~~--~~~-~~i~~~~~~~p~~  111 (450)
T PLN00093         38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLC---MVGEFDLPLD--IID-RKVTKMKMISPSN  111 (450)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHh---HHhhhcCcHH--HHH-HHhhhheEecCCc
Confidence            4689999999999999999999999999999987431    2211000   0000111000  000 0011111111111


Q ss_pred             CcccCCCCCCcCCCCCCCCCCC--CCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcC--CCceEEEEEeC-----C
Q 013303           77 LMGFQAYPFVARNYEGSVDLRR--YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE--SNKWKVKSRKK-----D  147 (446)
Q Consensus        77 ~~~~~d~~~~~~~~~~~~~~~~--~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~--~~~~~v~~~~~-----~  147 (446)
                      . . .+++...      .....  ..++..+.++|.+.+.+.|++  ++.+ +|.+++...  ++.+.|++.+.     .
T Consensus       112 ~-~-v~~~~~~------~~~~~~~~v~R~~~d~~L~~~A~~~Ga~--~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~  180 (450)
T PLN00093        112 V-A-VDIGKTL------KPHEYIGMVRREVLDSFLRERAQSNGAT--LING-LFTRIDVPKDPNGPYVIHYTSYDSGSGA  180 (450)
T ss_pred             e-E-EEecccC------CCCCeEEEecHHHHHHHHHHHHHHCCCE--EEec-eEEEEEeccCCCCcEEEEEEeccccccC
Confidence            0 0 0011000      00111  258899999999999998887  6554 577776422  24577776542     1


Q ss_pred             CceEEEEEcEEEEccCCCCC
Q 013303          148 DVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       148 ~~~~~~~~d~VVvAtG~~s~  167 (446)
                      ++..++.+|.||.|+|.+|.
T Consensus       181 g~~~~v~a~~VIgADG~~S~  200 (450)
T PLN00093        181 GTPKTLEVDAVIGADGANSR  200 (450)
T ss_pred             CCccEEEeCEEEEcCCcchH
Confidence            33357999999999997654

>PRK06753 hypothetical protein; Provisional

Probab=99.11  E-value=6.6e-10  Score=109.45  Aligned_cols=149  Identities=18%  Similarity=0.231  Sum_probs=86.6

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCc---eeeeCCCCC--CCCCCCCCCCCCc-cCCccCceeecCCCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG---SWIYTSETE--SDPLGVDPNRYPV-HSSLYKSLRVNLPRE   76 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG---~w~~~~~~~--~~~~g~~p~~~~~-~~~~y~~l~~~~~~~   76 (446)
                      ++|+||||||+|+++|..|++.|++|+|+|+.+.+..   .+...+..-  .+..|+...  +. .......+....+..
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~--~~~~~~~~~~~~~~~~~g   78 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKG--IKNAGQILSTMNLLDDKG   78 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHH--HHhcCCcccceeEEcCCC
Confidence            4899999999999999999999999999999875421   111100000  000111000  00 000111111111111


Q ss_pred             CcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEc
Q 013303           77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD  156 (446)
Q Consensus        77 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d  156 (446)
                      . .+...++...      ......++..+.+.|.+.+..  .  .++++++|++|+..+ +.++|++.++.    ++.+|
T Consensus        79 ~-~~~~~~~~~~------~~~~~i~R~~l~~~L~~~~~~--~--~i~~~~~v~~i~~~~-~~v~v~~~~g~----~~~~~  142 (373)
T PRK06753         79 T-LLNKVKLKSN------TLNVTLHRQTLIDIIKSYVKE--D--AIFTGKEVTKIENET-DKVTIHFADGE----SEAFD  142 (373)
T ss_pred             C-EEeecccccC------CccccccHHHHHHHHHHhCCC--c--eEEECCEEEEEEecC-CcEEEEECCCC----EEecC
Confidence            0 0111111110      112235778888888776653  2  389999999998765 77888876653    68999


Q ss_pred             EEEEccCCCCCCc
Q 013303          157 AVVVCNGHFSVPR  169 (446)
Q Consensus       157 ~VVvAtG~~s~p~  169 (446)
                      .||.|.|.+|.-+
T Consensus       143 ~vigadG~~S~vR  155 (373)
T PRK06753        143 LCIGADGIHSKVR  155 (373)
T ss_pred             EEEECCCcchHHH
Confidence            9999999876544

>PRK07588 hypothetical protein; Provisional

Probab=99.10  E-value=4e-10  Score=111.68  Aligned_cols=157  Identities=16%  Similarity=0.107  Sum_probs=87.0

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc---CceeeeCCCCC--CCCCCCCCCCCCccCCccCceeecCCCCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV---GGSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPREL   77 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~---GG~w~~~~~~~--~~~~g~~p~~~~~~~~~y~~l~~~~~~~~   77 (446)
                      +||+|||||++|+++|..|++.|++|+|+|+.+..   |..+...+..-  .+..|+-.. ..........+....... 
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~-l~~~~~~~~~~~~~~~~g-   78 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQ-LREAGYQIEHVRSVDPTG-   78 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHH-HHhccCCccceEEEcCCC-
Confidence            48999999999999999999999999999987654   22222211100  000111000 000000111111111110 


Q ss_pred             cccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcE
Q 013303           78 MGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA  157 (446)
Q Consensus        78 ~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~  157 (446)
                      ..+..+++...... ........++.++.+.|.+.+.. +++  ++++++|++++..+ +.++|+++++.    ++.+|.
T Consensus        79 ~~~~~~~~~~~~~~-~g~~~~~i~r~~l~~~L~~~~~~-~v~--i~~~~~v~~i~~~~-~~v~v~~~~g~----~~~~d~  149 (391)
T PRK07588         79 RRKADLNVDSFRRM-VGDDFTSLPRGDLAAAIYTAIDG-QVE--TIFDDSIATIDEHR-DGVRVTFERGT----PRDFDL  149 (391)
T ss_pred             CEEEEecHHHcccc-CCCceEEEEHHHHHHHHHHhhhc-CeE--EEeCCEEeEEEECC-CeEEEEECCCC----EEEeCE
Confidence            00011111100000 00011234567777777664432 455  99999999998776 67888877654    678999


Q ss_pred             EEEccCCCCCCcc
Q 013303          158 VVVCNGHFSVPRL  170 (446)
Q Consensus       158 VVvAtG~~s~p~~  170 (446)
                      ||.|.|.+|.-+.
T Consensus       150 vIgADG~~S~vR~  162 (391)
T PRK07588        150 VIGADGLHSHVRR  162 (391)
T ss_pred             EEECCCCCccchh
Confidence            9999998775543

>PRK06126 hypothetical protein; Provisional

Probab=99.10  E-value=2.9e-09  Score=110.11  Aligned_cols=164  Identities=16%  Similarity=0.107  Sum_probs=88.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCce---eeeCCCCC--CCCCCCCCC---CCCccCCccCc-eeec
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS---WIYTSETE--SDPLGVDPN---RYPVHSSLYKS-LRVN   72 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~---w~~~~~~~--~~~~g~~p~---~~~~~~~~y~~-l~~~   72 (446)
                      .++|+||||||+||++|..|++.|++|+|||+.+.+.-.   ....++.-  ....|+...   ........... ....
T Consensus         7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~~   86 (545)
T PRK06126          7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFTR   86 (545)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEec
Confidence            469999999999999999999999999999987643100   00000000  000111000   00000000000 0000


Q ss_pred             -CCCCCccc--CCC----CCCcCCC-C-CCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCceEEE
Q 013303           73 -LPRELMGF--QAY----PFVARNY-E-GSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVK  142 (446)
Q Consensus        73 -~~~~~~~~--~d~----~~~~~~~-~-~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~v~  142 (446)
                       ....+..+  ...    .+..... . .........+...+.+.|.+.+.+. ++.  ++++++|++++..+ +..+++
T Consensus        87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~--i~~~~~v~~i~~~~-~~v~v~  163 (545)
T PRK06126         87 LTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVT--LRYGHRLTDFEQDA-DGVTAT  163 (545)
T ss_pred             CCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCce--EEeccEEEEEEECC-CeEEEE
Confidence             00001000  000    0000000 0 0000112345677888888888765 666  99999999998776 567777


Q ss_pred             EEeC-CCceEEEEEcEEEEccCCCCCC
Q 013303          143 SRKK-DDVVEEETFDAVVVCNGHFSVP  168 (446)
Q Consensus       143 ~~~~-~~~~~~~~~d~VVvAtG~~s~p  168 (446)
                      +.+. +++..++.+|+||.|+|.+|.-
T Consensus       164 ~~~~~~g~~~~i~ad~vVgADG~~S~V  190 (545)
T PRK06126        164 VEDLDGGESLTIRADYLVGCDGARSAV  190 (545)
T ss_pred             EEECCCCcEEEEEEEEEEecCCcchHH
Confidence            7652 3445679999999999987753

>PRK07538 hypothetical protein; Provisional

Probab=99.10  E-value=1.9e-09  Score=107.60  Aligned_cols=160  Identities=18%  Similarity=0.103  Sum_probs=87.4

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcC---ceeeeCCCCC--CCCCCCCCCCCCcc-CCccCceeecCCCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG---GSWIYTSETE--SDPLGVDPNRYPVH-SSLYKSLRVNLPRE   76 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G---G~w~~~~~~~--~~~~g~~p~~~~~~-~~~y~~l~~~~~~~   76 (446)
                      +||+|||||++||++|..|++.|++|+|||+.+.+.   ......+..-  ....|+...  +.. ......+....+..
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~--l~~~~~~~~~~~~~~~~g   78 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDA--LDAIGIRTRELAYFNRHG   78 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHH--HHhhCCCCcceEEEcCCC
Confidence            489999999999999999999999999999987542   1111110000  000111000  000 00001111101100


Q ss_pred             CcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCCCcEEeCeEEEEEEEcCCCceEEEEEeCC-CceEEEE
Q 013303           77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEET  154 (446)
Q Consensus        77 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~-~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~-~~~~~~~  154 (446)
                      ..-+. .+....  .........+++.++.+.|.+.+.+ .+. ..++++++|++++..+ +...+.+.++. ++..++.
T Consensus        79 ~~~~~-~~~~~~--~~~~~~~~~i~R~~l~~~L~~~~~~~~g~-~~i~~~~~v~~~~~~~-~~~~~~~~~~~~g~~~~~~  153 (413)
T PRK07538         79 QRIWS-EPRGLA--AGYDWPQYSIHRGELQMLLLDAVRERLGP-DAVRTGHRVVGFEQDA-DVTVVFLGDRAGGDLVSVR  153 (413)
T ss_pred             CEEee-ccCCcc--cCCCCceEEEEHHHHHHHHHHHHHhhcCC-cEEEcCCEEEEEEecC-CceEEEEeccCCCccceEE
Confidence            00000 000000  0000011225778888888777654 453 2389999999998766 44566665532 3446899


Q ss_pred             EcEEEEccCCCCCCc
Q 013303          155 FDAVVVCNGHFSVPR  169 (446)
Q Consensus       155 ~d~VVvAtG~~s~p~  169 (446)
                      +|.||.|.|.+|.-+
T Consensus       154 adlvIgADG~~S~vR  168 (413)
T PRK07538        154 GDVLIGADGIHSAVR  168 (413)
T ss_pred             eeEEEECCCCCHHHh
Confidence            999999999877544

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.09  E-value=5e-10  Score=110.71  Aligned_cols=155  Identities=17%  Similarity=0.181  Sum_probs=83.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc----Ccee-----eeCCCCC--CCCCCCCCCCCCccCCccCcee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV----GGSW-----IYTSETE--SDPLGVDPNRYPVHSSLYKSLR   70 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~----GG~w-----~~~~~~~--~~~~g~~p~~~~~~~~~y~~l~   70 (446)
                      .+||+||||||+|+++|..|++.|++|+|||+.+..    .|.+     ...+..-  .+..|.-+.........+..+.
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~   82 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLE   82 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEE
Confidence            469999999999999999999999999999986411    1000     0000000  0001111000000000111111


Q ss_pred             e-cCCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCceEEEEEeCCC
Q 013303           71 V-NLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDD  148 (446)
Q Consensus        71 ~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~  148 (446)
                      . ........|........      .......+..+...|.+.+... ++.  ++++++|++++..+ +.++|++.++. 
T Consensus        83 ~~~~~~~~~~~~~~~~~~~------~~g~~i~~~~l~~~L~~~~~~~~~i~--i~~~~~v~~~~~~~-~~~~v~~~~g~-  152 (384)
T PRK08849         83 TWEHPECRTRFHSDELNLD------QLGYIVENRLIQLGLWQQFAQYPNLT--LMCPEKLADLEFSA-EGNRVTLESGA-  152 (384)
T ss_pred             EEeCCCceEEecccccCCC------ccEEEEEcHHHHHHHHHHHHhCCCeE--EECCCceeEEEEcC-CeEEEEECCCC-
Confidence            0 00000011110000000      0011233455666666655554 455  89999999998876 66788887653 


Q ss_pred             ceEEEEEcEEEEccCCCCCCc
Q 013303          149 VVEEETFDAVVVCNGHFSVPR  169 (446)
Q Consensus       149 ~~~~~~~d~VVvAtG~~s~p~  169 (446)
                         ++++|.||.|+|.+|.-+
T Consensus       153 ---~~~~~lvIgADG~~S~vR  170 (384)
T PRK08849        153 ---EIEAKWVIGADGANSQVR  170 (384)
T ss_pred             ---EEEeeEEEEecCCCchhH
Confidence               799999999999877544

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=99.09  E-value=2.1e-10  Score=113.40  Aligned_cols=149  Identities=12%  Similarity=0.086  Sum_probs=85.7

Q ss_pred             eEEEECcChHHHHHHHHHHHCC-CcEEEEeeCCCcCc--------eeeeCCCC-CCCCCCCCCCCCCccCCccCceeecC
Q 013303            4 HVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGG--------SWIYTSET-ESDPLGVDPNRYPVHSSLYKSLRVNL   73 (446)
Q Consensus         4 ~V~IIGaG~aGl~aA~~l~~~g-~~v~v~e~~~~~GG--------~w~~~~~~-~~~~~g~~p~~~~~~~~~y~~l~~~~   73 (446)
                      ||+||||||+|+++|..|++.| ++|+|+|+.+.+.-        ........ ..+..|+...... ............
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~-~~~~~~~~~~~~   79 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAP-FATPILDIHVSD   79 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHh-hcCccceEEEEc
Confidence            7999999999999999999999 99999999764311        00000000 0001111100000 000000111000


Q ss_pred             C--CCCcccCCCCCCcCCCCCCCCCC-CCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCc
Q 013303           74 P--RELMGFQAYPFVARNYEGSVDLR-RYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV  149 (446)
Q Consensus        74 ~--~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~  149 (446)
                      .  .....+   +....    ..... ...++.++.+.|.+.+... +++  ++++++|+++...+ +.++|++.++.  
T Consensus        80 ~~~~~~~~~---~~~~~----~~~~~~~~i~r~~l~~~L~~~~~~~~gv~--~~~~~~v~~i~~~~-~~~~v~~~~g~--  147 (382)
T TIGR01984        80 QGHFGATHL---RASEF----GLPALGYVVELADLGQALLSRLALLTNIQ--LYCPARYKEIIRNQ-DYVRVTLDNGQ--  147 (382)
T ss_pred             CCCCceEEe---chhhc----CCCccEEEEEcHHHHHHHHHHHHhCCCcE--EEcCCeEEEEEEcC-CeEEEEECCCC--
Confidence            0  000000   00000    00011 1246688888998888874 777  88999999998776 67888775543  


Q ss_pred             eEEEEEcEEEEccCCCCC
Q 013303          150 VEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       150 ~~~~~~d~VVvAtG~~s~  167 (446)
                        ++.+|.||.|.|.+|.
T Consensus       148 --~~~ad~vV~AdG~~S~  163 (382)
T TIGR01984       148 --QLRAKLLIAADGANSK  163 (382)
T ss_pred             --EEEeeEEEEecCCChH
Confidence              6899999999997664

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK07236 hypothetical protein; Provisional

Probab=99.09  E-value=1.3e-09  Score=107.72  Aligned_cols=146  Identities=19%  Similarity=0.147  Sum_probs=80.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc----CceeeeCCCCC--CCCCCCCCCCCCccCCccCceeecCCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV----GGSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPR   75 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~----GG~w~~~~~~~--~~~~g~~p~~~~~~~~~y~~l~~~~~~   75 (446)
                      .++|+|||||++||++|..|++.|++|+|||+.+..    |+.....+...  .+..|+.+...  ..............
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~--~~~~~~~~~~~~~~   83 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPAD--IGVPSRERIYLDRD   83 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccc--cccCccceEEEeCC
Confidence            579999999999999999999999999999997632    21111110000  00011111000  00000000000000


Q ss_pred             CCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEE
Q 013303           76 ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF  155 (446)
Q Consensus        76 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~  155 (446)
                      .. .+...+.          ......+..+.+.|.+   .+. ...++++++|++++..+ +.++|++.++.    ++.+
T Consensus        84 g~-~~~~~~~----------~~~~~~~~~l~~~L~~---~~~-~~~i~~~~~v~~i~~~~-~~v~v~~~~g~----~~~a  143 (386)
T PRK07236         84 GR-VVQRRPM----------PQTQTSWNVLYRALRA---AFP-AERYHLGETLVGFEQDG-DRVTARFADGR----RETA  143 (386)
T ss_pred             CC-EeeccCC----------CccccCHHHHHHHHHH---hCC-CcEEEcCCEEEEEEecC-CeEEEEECCCC----EEEe
Confidence            00 0000111          0112244555555543   222 12389999999998776 66888877654    7899


Q ss_pred             cEEEEccCCCCCCc
Q 013303          156 DAVVVCNGHFSVPR  169 (446)
Q Consensus       156 d~VVvAtG~~s~p~  169 (446)
                      |.||.|.|.+|..+
T Consensus       144 d~vIgADG~~S~vR  157 (386)
T PRK07236        144 DLLVGADGGRSTVR  157 (386)
T ss_pred             CEEEECCCCCchHH
Confidence            99999999877654

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.09  E-value=9.1e-10  Score=109.05  Aligned_cols=155  Identities=22%  Similarity=0.181  Sum_probs=85.6

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCc--eeeeCCCC-C-CCCCCCCCCCCCccCCccCceeecCCCC-C
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG--SWIYTSET-E-SDPLGVDPNRYPVHSSLYKSLRVNLPRE-L   77 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG--~w~~~~~~-~-~~~~g~~p~~~~~~~~~y~~l~~~~~~~-~   77 (446)
                      +||+|||||++|+++|..|++.|++|+|||+.+..+.  .+...... . .+..|.-+.. ......+..+....+.. .
T Consensus         8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~-~~~~~~~~~~~~~~~~g~~   86 (388)
T PRK07494          8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARL-APHAAPLQSMRIVDATGRL   86 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhh-HhhcceeeEEEEEeCCCCC
Confidence            5899999999999999999999999999999864421  00000000 0 0000110000 00000111111111110 0


Q ss_pred             cccCCCCCCcCCCCCCCCC-CCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEc
Q 013303           78 MGFQAYPFVARNYEGSVDL-RRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD  156 (446)
Q Consensus        78 ~~~~d~~~~~~~~~~~~~~-~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d  156 (446)
                      ...+...+...  +..... ....++..+.+.|.+.+.+++..  .+++++|++++..+ +.|+|++.++.    ++.+|
T Consensus        87 ~~~~~~~~~~~--~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~--~~~~~~v~~i~~~~-~~~~v~~~~g~----~~~a~  157 (388)
T PRK07494         87 IRAPEVRFRAA--EIGEDAFGYNIPNWLLNRALEARVAELPNI--TRFGDEAESVRPRE-DEVTVTLADGT----TLSAR  157 (388)
T ss_pred             CCCceEEEcHH--hcCCCccEEEeEhHHHHHHHHHHHhcCCCc--EEECCeeEEEEEcC-CeEEEEECCCC----EEEEe
Confidence            00000000000  000001 11246678888888888776543  47899999998766 77888776543    78999


Q ss_pred             EEEEccCCCCC
Q 013303          157 AVVVCNGHFSV  167 (446)
Q Consensus       157 ~VVvAtG~~s~  167 (446)
                      .||.|+|.+|.
T Consensus       158 ~vI~AdG~~S~  168 (388)
T PRK07494        158 LVVGADGRNSP  168 (388)
T ss_pred             EEEEecCCCch
Confidence            99999997664

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=99.07  E-value=2.3e-09  Score=105.71  Aligned_cols=82  Identities=18%  Similarity=0.081  Sum_probs=54.8

Q ss_pred             EEEEecCCcHHHHH-HHHh----ccCCEEEEEEecCCc-------ccc-ccCCCC-CCeeeccceeEEccCC-cE---Ee
Q 013303          200 VILIGHYASGLDIK-RDLA----GFAKEVHIASRSVAD-------ETH-EKQPGY-DNMWLHSMVERANEDG-TV---VF  261 (446)
Q Consensus       200 VvVVG~G~sg~eia-~~l~----~~~~~V~l~~r~~~~-------~~~-~~~~~~-~~v~~~~~v~~i~~~~-~v---~~  261 (446)
                      =+|++.+..|+|.+ ..++    +.|.+|+++.+.++.       +.+ +.+.+. ..+.....|.+++.++ .+   ..
T Consensus       218 ~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~  297 (422)
T PRK05329        218 EAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPGLRLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWT  297 (422)
T ss_pred             CEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCchHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEe
Confidence            37789999999998 5554    469999999877651       111 222222 3566677888876432 22   23


Q ss_pred             cCCc--EEeecEEEEecCccCC
Q 013303          262 RNGR--VVSADVIMHCTGYKYN  281 (446)
Q Consensus       262 ~dG~--~~~~D~vi~atG~~~~  281 (446)
                      .+|+  .+++|.||+|||..++
T Consensus       298 ~~g~~~~i~AD~VVLAtGrf~s  319 (422)
T PRK05329        298 RNHGDIPLRARHFVLATGSFFS  319 (422)
T ss_pred             eCCceEEEECCEEEEeCCCccc
Confidence            4554  3789999999998765

>PRK06475 salicylate hydroxylase; Provisional

Probab=99.07  E-value=1.6e-09  Score=107.76  Aligned_cols=163  Identities=20%  Similarity=0.240  Sum_probs=89.7

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc---CceeeeCCCCC--CCCCCCCCCCCCcc-CCccCceeecCC
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV---GGSWIYTSETE--SDPLGVDPNRYPVH-SSLYKSLRVNLP   74 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~---GG~w~~~~~~~--~~~~g~~p~~~~~~-~~~y~~l~~~~~   74 (446)
                      |.++|+|||||++||++|..|++.|++|+|+|+.+.+   |......+...  ....|..+.  +.. ......+.....
T Consensus         1 ~~~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~--l~~~~~~~~~~~~~~g   78 (400)
T PRK06475          1 TRGSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADR--LSGTGVTPKALYLMDG   78 (400)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHH--HhhcccCcceEEEecC
Confidence            5689999999999999999999999999999998754   21111111000  000111000  000 000000000000


Q ss_pred             CCCcccCCCCCCcCCCCCCCCCC-CCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEE
Q 013303           75 RELMGFQAYPFVARNYEGSVDLR-RYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEE  152 (446)
Q Consensus        75 ~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~  152 (446)
                      ..........+..... .....+ ...++.++.+.|.+.+... ++.  ++++++|++++..+ +.++|++.++.+ ..+
T Consensus        79 ~~~~~~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~--v~~~~~v~~~~~~~-~~v~v~~~~~~~-~~~  153 (400)
T PRK06475         79 RKARPLLAMQLGDLAR-KRWHHPYIVCHRADLQSALLDACRNNPGIE--IKLGAEMTSQRQTG-NSITATIIRTNS-VET  153 (400)
T ss_pred             CCcceEEEecchhhhh-hcCCCCceeECHHHHHHHHHHHHHhcCCcE--EEECCEEEEEecCC-CceEEEEEeCCC-CcE
Confidence            0000000000000000 000011 1246788888888877654 566  89999999998765 678887754332 236


Q ss_pred             EEEcEEEEccCCCCCCcc
Q 013303          153 ETFDAVVVCNGHFSVPRL  170 (446)
Q Consensus       153 ~~~d~VVvAtG~~s~p~~  170 (446)
                      +.+|.||.|.|.+|.-+.
T Consensus       154 ~~adlvIgADG~~S~vR~  171 (400)
T PRK06475        154 VSAAYLIACDGVWSMLRA  171 (400)
T ss_pred             EecCEEEECCCccHhHHh
Confidence            899999999998876543

>PRK07190 hypothetical protein; Provisional

Probab=99.06  E-value=1.9e-09  Score=109.27  Aligned_cols=157  Identities=17%  Similarity=0.082  Sum_probs=86.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceee---eCCCCC--CCCCCCCCCCCCcc-CCccCceeecCCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI---YTSETE--SDPLGVDPNRYPVH-SSLYKSLRVNLPR   75 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~---~~~~~~--~~~~g~~p~~~~~~-~~~y~~l~~~~~~   75 (446)
                      .+||+||||||+||++|..|++.|++|+|+|+.+.+...-.   ..+..-  .+..|....  +.. .............
T Consensus         5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~--l~~~~~~~~~~~~~~~g   82 (487)
T PRK07190          5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDE--LYPLGKPCNTSSVWANG   82 (487)
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHH--HHhhCccceeEEEecCC
Confidence            46999999999999999999999999999999875521100   000000  000010000  000 0000000000000


Q ss_pred             CCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEE
Q 013303           76 ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF  155 (446)
Q Consensus        76 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~  155 (446)
                      ..+......+... ...........+...+.+.|.+.+.+.|+.  ++++++|++++..+ +.+++++.++    .++.+
T Consensus        83 ~~i~~~~~~~~~~-~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~--v~~~~~v~~l~~~~-~~v~v~~~~g----~~v~a  154 (487)
T PRK07190         83 KFISRQSSWWEEL-EGCLHKHFLMLGQSYVEKLLDDKLKEAGAA--VKRNTSVVNIELNQ-AGCLTTLSNG----ERIQS  154 (487)
T ss_pred             ceEeeccccCccC-CcCCCCceEecCHHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcC-CeeEEEECCC----cEEEe
Confidence            0000000000000 000000011234567778888888888887  99999999998876 5666666443    27899


Q ss_pred             cEEEEccCCCCCC
Q 013303          156 DAVVVCNGHFSVP  168 (446)
Q Consensus       156 d~VVvAtG~~s~p  168 (446)
                      ++||.|+|.+|.-
T Consensus       155 ~~vVgADG~~S~v  167 (487)
T PRK07190        155 RYVIGADGSRSFV  167 (487)
T ss_pred             CEEEECCCCCHHH
Confidence            9999999976643

>PLN02697 lycopene epsilon cyclase

Probab=99.06  E-value=1e-09  Score=111.29  Aligned_cols=137  Identities=19%  Similarity=0.202  Sum_probs=84.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcC---ceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG---GSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM   78 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G---G~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~   78 (446)
                      .+||+||||||||+++|..|++.|++|+|+|+...+.   |.|...    ....|..+   .+ ...|.......+... 
T Consensus       108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~----l~~lgl~~---~i-~~~w~~~~v~~~~~~-  178 (529)
T PLN02697        108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDE----FKDLGLED---CI-EHVWRDTIVYLDDDK-  178 (529)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhH----HHhcCcHH---HH-HhhcCCcEEEecCCc-
Confidence            4799999999999999999999999999999864433   333211    00011100   00 011111111111000 


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEE-EEeCCCceEEEEEcE
Q 013303           79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVK-SRKKDDVVEEETFDA  157 (446)
Q Consensus        79 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~-~~~~~~~~~~~~~d~  157 (446)
                           +.. .     .......++..+.+.|.+.+.+.++.  + ++++|+.+...+ +.+.+. ..++    .++.++.
T Consensus       179 -----~~~-~-----~~~Yg~V~R~~L~~~Ll~~a~~~GV~--~-~~~~V~~I~~~~-~~~~vv~~~dG----~~i~A~l  239 (529)
T PLN02697        179 -----PIM-I-----GRAYGRVSRTLLHEELLRRCVESGVS--Y-LSSKVDRITEAS-DGLRLVACEDG----RVIPCRL  239 (529)
T ss_pred             -----eee-c-----cCcccEEcHHHHHHHHHHHHHhcCCE--E-EeeEEEEEEEcC-CcEEEEEEcCC----cEEECCE
Confidence                 000 0     00112357788999999988888876  5 688999998765 555543 3333    2799999


Q ss_pred             EEEccCCCC
Q 013303          158 VVVCNGHFS  166 (446)
Q Consensus       158 VVvAtG~~s  166 (446)
                      ||+|+|+.+
T Consensus       240 VI~AdG~~S  248 (529)
T PLN02697        240 ATVASGAAS  248 (529)
T ss_pred             EEECCCcCh
Confidence            999999876

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=99.06  E-value=1.7e-09  Score=111.80  Aligned_cols=155  Identities=20%  Similarity=0.258  Sum_probs=88.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCce---eeeCCCCC--CCCCCCCCCCCCcc-CCccCceeec-CC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS---WIYTSETE--SDPLGVDPNRYPVH-SSLYKSLRVN-LP   74 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~---w~~~~~~~--~~~~g~~p~~~~~~-~~~y~~l~~~-~~   74 (446)
                      ..||+||||||+||++|..|++.|++|+|||+.+.+...   +...+..-  .+..|+...  +.. ...+...... ..
T Consensus        23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~--l~~~~~~~~~~~~~~~~  100 (547)
T PRK08132         23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGER--MVDKGVSWNVGKVFLRD  100 (547)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHH--HHhhCceeeceeEEeCC
Confidence            468999999999999999999999999999998755321   11111000  000111100  000 0000000000 00


Q ss_pred             CCCcccCCCCCCcCCCCCCCCCC--CCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceE
Q 013303           75 RELMGFQAYPFVARNYEGSVDLR--RYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVE  151 (446)
Q Consensus        75 ~~~~~~~d~~~~~~~~~~~~~~~--~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~  151 (446)
                      .....+   ++...   .....+  ...+...+.++|.+.+.+. ++.  ++++++|++++..+ +.+++++.+.++ ..
T Consensus       101 ~~~~~~---~~~~~---~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~--v~~~~~v~~i~~~~-~~v~v~~~~~~g-~~  170 (547)
T PRK08132        101 EEVYRF---DLLPE---PGHRRPAFINLQQYYVEGYLVERAQALPNID--LRWKNKVTGLEQHD-DGVTLTVETPDG-PY  170 (547)
T ss_pred             CeEEEe---cCCCC---CCCCCCceEecCHHHHHHHHHHHHHhCCCcE--EEeCCEEEEEEEcC-CEEEEEEECCCC-cE
Confidence            111111   11100   000011  1145667888888888776 455  99999999998876 667777654332 24


Q ss_pred             EEEEcEEEEccCCCCCC
Q 013303          152 EETFDAVVVCNGHFSVP  168 (446)
Q Consensus       152 ~~~~d~VVvAtG~~s~p  168 (446)
                      ++.+|+||.|+|.+|.-
T Consensus       171 ~i~ad~vVgADG~~S~v  187 (547)
T PRK08132        171 TLEADWVIACDGARSPL  187 (547)
T ss_pred             EEEeCEEEECCCCCcHH
Confidence            68999999999976653

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=99.05  E-value=1.2e-09  Score=108.39  Aligned_cols=153  Identities=17%  Similarity=0.190  Sum_probs=85.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc----Cceeee-----CCCC-C-CCCCCCCCCCCCccCCccCcee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV----GGSWIY-----TSET-E-SDPLGVDPNRYPVHSSLYKSLR   70 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~----GG~w~~-----~~~~-~-~~~~g~~p~~~~~~~~~y~~l~   70 (446)
                      .+||+||||||+|+++|..|++.|++|+|+|+.+..    ++.+..     .+.. . .+..|.-+.........+..+.
T Consensus         5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~   84 (391)
T PRK08020          5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLE   84 (391)
T ss_pred             cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEE
Confidence            479999999999999999999999999999987521    110000     0000 0 0001110000000000111111


Q ss_pred             ec-CCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCceEEEEEeCCC
Q 013303           71 VN-LPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDD  148 (446)
Q Consensus        71 ~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~  148 (446)
                      .. .......+.......      .......++..+.+.|.+.++.. ++.  ++++++|+++...+ +.|.|++.++. 
T Consensus        85 ~~~~~~~~~~~~~~~~~~------~~~g~~i~r~~l~~~L~~~~~~~~gv~--i~~~~~v~~i~~~~-~~~~v~~~~g~-  154 (391)
T PRK08020         85 TWEWETAHVVFDAAELKL------PELGYMVENRVLQLALWQALEAHPNVT--LRCPASLQALQRDD-DGWELTLADGE-  154 (391)
T ss_pred             EEeCCCCeEEecccccCC------CccEEEEEcHHHHHHHHHHHHcCCCcE--EEcCCeeEEEEEcC-CeEEEEECCCC-
Confidence            10 000001110000000      00011245677888888877766 666  88899999998766 66888776543 


Q ss_pred             ceEEEEEcEEEEccCCCCC
Q 013303          149 VVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       149 ~~~~~~~d~VVvAtG~~s~  167 (446)
                         ++++|.||.|+|.+|.
T Consensus       155 ---~~~a~~vI~AdG~~S~  170 (391)
T PRK08020        155 ---EIQAKLVIGADGANSQ  170 (391)
T ss_pred             ---EEEeCEEEEeCCCCch
Confidence               7899999999997664

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=99.03  E-value=3.8e-09  Score=104.70  Aligned_cols=159  Identities=21%  Similarity=0.242  Sum_probs=85.8

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc------CceeeeCCCCC-CCCCCCCCCCCCccCCccCceeecC
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV------GGSWIYTSETE-SDPLGVDPNRYPVHSSLYKSLRVNL   73 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~------GG~w~~~~~~~-~~~~g~~p~~~~~~~~~y~~l~~~~   73 (446)
                      |+.||+||||||+|+++|..|++.|++|+|+|+.+..      ++......... .+..|+.... .-.......+....
T Consensus         1 ~~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l-~~~~~~~~~~~~~~   79 (392)
T PRK08243          1 MRTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERM-DREGLVHDGIELRF   79 (392)
T ss_pred             CcceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHH-HhcCCccCcEEEEE
Confidence            5789999999999999999999999999999998641      11111000000 0011110000 00000111111100


Q ss_pred             CCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEE
Q 013303           74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE  153 (446)
Q Consensus        74 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~  153 (446)
                      .....   .+++....   ........+..++.+.|.+.+...+++  ++++++|++++..+++.-.|++.. +++..++
T Consensus        80 ~g~~~---~~~~~~~~---~~~~~~~~~~~~l~~~Ll~~a~~~gv~--v~~~~~v~~i~~~~~~~~~V~~~~-~G~~~~i  150 (392)
T PRK08243         80 DGRRH---RIDLTELT---GGRAVTVYGQTEVTRDLMAARLAAGGP--IRFEASDVALHDFDSDRPYVTYEK-DGEEHRL  150 (392)
T ss_pred             CCEEE---Eecccccc---CCceEEEeCcHHHHHHHHHHHHhCCCe--EEEeeeEEEEEecCCCceEEEEEc-CCeEEEE
Confidence            11110   11221110   000011123445666666666667777  999999999976222445566532 3344578


Q ss_pred             EEcEEEEccCCCCCCc
Q 013303          154 TFDAVVVCNGHFSVPR  169 (446)
Q Consensus       154 ~~d~VVvAtG~~s~p~  169 (446)
                      ++|.||.|.|.+|.-+
T Consensus       151 ~ad~vVgADG~~S~vR  166 (392)
T PRK08243        151 DCDFIAGCDGFHGVSR  166 (392)
T ss_pred             EeCEEEECCCCCCchh
Confidence            9999999999877654

>PLN02661 Putative thiazole synthesis

Probab=99.03  E-value=2.5e-09  Score=101.50  Aligned_cols=139  Identities=17%  Similarity=0.200  Sum_probs=79.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHC-CCcEEEEeeCCCcCc-eeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQVGG-SWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG   79 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~-g~~v~v~e~~~~~GG-~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~   79 (446)
                      ..||+|||||++|+++|..|++. |++|+|+|+...+|| .|.-....         ....+....         ...+.
T Consensus        92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~---------~~~vv~~~a---------~e~Le  153 (357)
T PLN02661         92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLF---------SAMVVRKPA---------HLFLD  153 (357)
T ss_pred             cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccc---------cccccccHH---------HHHHH
Confidence            46999999999999999999986 899999999988866 55321000         000000000         00000


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCCCcEEeCeEEEEEEEcCCCc-------eEEEEEeCCC---
Q 013303           80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNK-------WKVKSRKKDD---  148 (446)
Q Consensus        80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~-~~l~~~i~~~~~V~~v~~~~~~~-------~~v~~~~~~~---  148 (446)
                      --..+++..     .......+..++.+.|.+.+.+ .++.  +..++.|..+...+ +.       |.+...++.+   
T Consensus       154 ElGV~fd~~-----dgy~vv~ha~e~~stLi~ka~~~~gVk--I~~~t~V~DLI~~~-grVaGVVvnw~~v~~~~~~~s~  225 (357)
T PLN02661        154 ELGVPYDEQ-----ENYVVIKHAALFTSTIMSKLLARPNVK--LFNAVAAEDLIVKG-DRVGGVVTNWALVAQNHDTQSC  225 (357)
T ss_pred             HcCCCcccC-----CCeeEecchHHHHHHHHHHHHhcCCCE--EEeCeEeeeEEecC-CEEEEEEeecchhhhccCCCCc
Confidence            011233211     0001111334555666665543 5676  88888999887654 32       3332222221   


Q ss_pred             -ceEEEEEcEEEEccCCCC
Q 013303          149 -VVEEETFDAVVVCNGHFS  166 (446)
Q Consensus       149 -~~~~~~~d~VVvAtG~~s  166 (446)
                       +...+.+++||+||||..
T Consensus       226 ~dp~~I~AkaVVlATGh~g  244 (357)
T PLN02661        226 MDPNVMEAKVVVSSCGHDG  244 (357)
T ss_pred             cceeEEECCEEEEcCCCCC
Confidence             234789999999999743

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.02  E-value=1.5e-09  Score=106.84  Aligned_cols=151  Identities=11%  Similarity=0.139  Sum_probs=88.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc-------CceeeeCCCCC--CCCCCCCCCCCCccCCccCceeec
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV-------GGSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVN   72 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~-------GG~w~~~~~~~--~~~~g~~p~~~~~~~~~y~~l~~~   72 (446)
                      +.||+||||||+|+++|..|++.|++|+|+|+.+..       |......+...  .+..|+-.... .....+..+...
T Consensus         1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~-~~~~~~~~~~~~   79 (374)
T PRK06617          1 MSNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELE-KFVAEMQDIYVV   79 (374)
T ss_pred             CccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHH-hhcCCCcEEEEE
Confidence            479999999999999999999999999999986321       11111110000  00111100000 000111111111


Q ss_pred             CCC--CCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-CCCcEEeCeEEEEEEEcCCCceEEEEEeCCCc
Q 013303           73 LPR--ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRKKDDV  149 (446)
Q Consensus        73 ~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~-l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~  149 (446)
                      .+.  ....+..   ...     .......++.++.+.|.+.+...+ +.  ++++++|+++...+ +.++|++.++   
T Consensus        80 ~~~g~~~~~~~~---~~~-----~~~g~~v~r~~L~~~L~~~~~~~~~v~--~~~~~~v~~i~~~~-~~v~v~~~~~---  145 (374)
T PRK06617         80 DNKASEILDLRN---DAD-----AVLGYVVKNSDFKKILLSKITNNPLIT--LIDNNQYQEVISHN-DYSIIKFDDK---  145 (374)
T ss_pred             ECCCceEEEecC---CCC-----CCcEEEEEHHHHHHHHHHHHhcCCCcE--EECCCeEEEEEEcC-CeEEEEEcCC---
Confidence            111  1111111   000     001123567889999988888775 54  78899999998776 6677777432   


Q ss_pred             eEEEEEcEEEEccCCCCCCc
Q 013303          150 VEEETFDAVVVCNGHFSVPR  169 (446)
Q Consensus       150 ~~~~~~d~VVvAtG~~s~p~  169 (446)
                        ++++|.||.|.|.+|.-+
T Consensus       146 --~~~adlvIgADG~~S~vR  163 (374)
T PRK06617        146 --QIKCNLLIICDGANSKVR  163 (374)
T ss_pred             --EEeeCEEEEeCCCCchhH
Confidence              799999999999877654

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=99.02  E-value=5.6e-09  Score=95.06  Aligned_cols=253  Identities=18%  Similarity=0.224  Sum_probs=136.1

Q ss_pred             CeEEEECcChHHHHHHHHHHHC-C-CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCccc
Q 013303            3 RHVAVIGAGAAGLVVGHELLRE-G-HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~-g-~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~   80 (446)
                      .+|+|||||.+|+++|..+.+. | -+|.|+|..+.=                           .|....+-....++.+
T Consensus        40 ~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~H---------------------------yYQPgfTLvGgGl~~l   92 (446)
T KOG3851|consen   40 FKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDH---------------------------YYQPGFTLVGGGLKSL   92 (446)
T ss_pred             eEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhc---------------------------ccCcceEEeccchhhh
Confidence            5899999999999999998875 4 389999986521                           1222222222222222


Q ss_pred             CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEE
Q 013303           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV  160 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVv  160 (446)
                      ..-.-+.        ....|..   ..++++.+++|+-                  +.-+|.+++++    +|.||++|+
T Consensus        93 ~~srr~~--------a~liP~~---a~wi~ekv~~f~P------------------~~N~v~t~gg~----eIsYdylvi  139 (446)
T KOG3851|consen   93 DSSRRKQ--------ASLIPKG---ATWIKEKVKEFNP------------------DKNTVVTRGGE----EISYDYLVI  139 (446)
T ss_pred             hhccCcc--------cccccCC---cHHHHHHHHhcCC------------------CcCeEEccCCc----EEeeeeEee
Confidence            1100000        1112222   2355565655543                  23556666664    899999999


Q ss_pred             ccCCCCCCccCCCCCCCC-C--CccE-EEeee-----cCCCCCC---------CCCEEEEEecCCcHHHHHHHHh-ccC-
Q 013303          161 CNGHFSVPRLAQVPGIDS-W--PGKQ-MHSHN-----YRIPNPF---------QDQVVILIGHYASGLDIKRDLA-GFA-  220 (446)
Q Consensus       161 AtG~~s~p~~p~i~G~~~-~--~g~~-~hs~~-----~~~~~~~---------~~k~VvVVG~G~sg~eia~~l~-~~~-  220 (446)
                      |+|.  .-+.-.|+|+.+ +  ++.. ..|..     |.....|         .+..|=.-|+-.-.+=|+.... +.| 
T Consensus       140 A~Gi--ql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gv  217 (446)
T KOG3851|consen  140 AMGI--QLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFKKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGV  217 (446)
T ss_pred             eeec--eeccchhcChHhhccCCCcccccChHHHHHHHHHHHhccCCceEEecCCCccccCCCchhhhhhhHHHHHHhCc
Confidence            9994  444455666432 1  1110 11111     1111122         2233334455555555555543 333 


Q ss_pred             -CEEEEEEecCC---------ccccccCCCCCCeeec--cceeEEccCCc-EEecC----CcE--EeecEEEEecCccC-
Q 013303          221 -KEVHIASRSVA---------DETHEKQPGYDNMWLH--SMVERANEDGT-VVFRN----GRV--VSADVIMHCTGYKY-  280 (446)
Q Consensus       221 -~~V~l~~r~~~---------~~~~~~~~~~~~v~~~--~~v~~i~~~~~-v~~~d----G~~--~~~D~vi~atG~~~-  280 (446)
                       .++.++...+.         .+.+.++.+..++.++  .++.++..+++ .+|++    |.+  ++++.+-......+ 
T Consensus       218 Rd~a~iiy~Tsl~~iFgVk~Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe~L~kPG~t~ei~yslLHv~Ppms~p  297 (446)
T KOG3851|consen  218 RDNANIIYNTSLPTIFGVKHYADALEKVIQERNITVNYKRNLIEVRTNDRKAVFENLDKPGVTEEIEYSLLHVTPPMSTP  297 (446)
T ss_pred             cccccEEEecCccceecHHHHHHHHHHHHHhcceEeeeccceEEEeccchhhHHHhcCCCCceeEEeeeeeeccCCCCCh
Confidence             35777766554         2233344444555443  45556654433 44442    543  66888777665543 


Q ss_pred             ----CCCCCCCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCccCc
Q 013303          281 ----NYPFLETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVIP  325 (446)
Q Consensus       281 ----~~~~l~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~~  325 (446)
                          +.++.+..|++.||....        ..+.+||+|.||++...+.
T Consensus       298 e~l~~s~~adktGfvdVD~~Tl--------Qs~kypNVFgiGDc~n~Pn  338 (446)
T KOG3851|consen  298 EVLANSDLADKTGFVDVDQSTL--------QSKKYPNVFGIGDCMNLPN  338 (446)
T ss_pred             hhhhcCcccCcccceecChhhh--------ccccCCCceeeccccCCCc
Confidence                345677888888886543        1244899999998876554

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=99.00  E-value=2.4e-10  Score=99.46  Aligned_cols=138  Identities=22%  Similarity=0.209  Sum_probs=75.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCce-eeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCC-Ccc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS-WIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRE-LMG   79 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~-w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~-~~~   79 (446)
                      .+||+||||||+||+||+.|++.|++|++||++..+||. |.-                   ..+|+.+....+.. .+.
T Consensus        17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~G-------------------g~lf~~iVVq~~a~~iL~   77 (230)
T PF01946_consen   17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGG-------------------GMLFNKIVVQEEADEILD   77 (230)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS--------------------CTT---EEEETTTHHHHH
T ss_pred             cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccccc-------------------ccccchhhhhhhHHHHHH
Confidence            469999999999999999999999999999999888864 542                   11333333333221 111


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceE-EEEE------eCC-CceE
Q 013303           80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSR------KKD-DVVE  151 (446)
Q Consensus        80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~-v~~~------~~~-~~~~  151 (446)
                      --..++.+.     .+.-...+..++...|..-+-+.|..  |.-.+.|+.+-..++++-. |.+.      .+. -+..
T Consensus        78 elgi~y~~~-----~~g~~v~d~~~~~s~L~s~a~~aGak--ifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl  150 (230)
T PF01946_consen   78 ELGIPYEEY-----GDGYYVADSVEFTSTLASKAIDAGAK--IFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPL  150 (230)
T ss_dssp             HHT---EE------SSEEEES-HHHHHHHHHHHHHTTTEE--EEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-E
T ss_pred             hCCceeEEe-----CCeEEEEcHHHHHHHHHHHHhcCCCE--EEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcc
Confidence            111222221     01112246678888888777777776  7777888887544421111 1111      110 1346


Q ss_pred             EEEEcEEEEccCCC
Q 013303          152 EETFDAVVVCNGHF  165 (446)
Q Consensus       152 ~~~~d~VVvAtG~~  165 (446)
                      .+++++||-||||-
T Consensus       151 ~i~ak~ViDaTGHd  164 (230)
T PF01946_consen  151 TIRAKVVIDATGHD  164 (230)
T ss_dssp             EEEESEEEE---SS
T ss_pred             eEEEeEEEeCCCCc
Confidence            89999999999983

>PRK05868 hypothetical protein; Validated

Probab=99.00  E-value=4.9e-09  Score=102.99  Aligned_cols=158  Identities=16%  Similarity=0.129  Sum_probs=83.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcC--ce-eeeCCCCC--CCCCCCCCCCCCccCCccCceeecCCCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG--GS-WIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPRE   76 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G--G~-w~~~~~~~--~~~~g~~p~~~~~~~~~y~~l~~~~~~~   76 (446)
                      |+||+|||||++|+++|..|++.|++|+|||+.+.+.  |. ....+..-  .+..|..... .........+....+..
T Consensus         1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~-~~~~~~~~~~~~~~~~g   79 (372)
T PRK05868          1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAA-QEHKTRIRGASFVDRDG   79 (372)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHH-HhhccCccceEEEeCCC
Confidence            5799999999999999999999999999999987542  11 11110000  0011110000 00000111111111110


Q ss_pred             CcccCCCCCCcCCCCCCCCCC-CCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEE
Q 013303           77 LMGFQAYPFVARNYEGSVDLR-RYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF  155 (446)
Q Consensus        77 ~~~~~d~~~~~~~~~~~~~~~-~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~  155 (446)
                      . .+...+..... ......+ .-..+.++.+.|.+.+ ..+++  ++|+++|+.++..+ +..+|+..++.    ++++
T Consensus        80 ~-~~~~~~~~~~~-~~~~~~~~~~i~R~~L~~~l~~~~-~~~v~--i~~~~~v~~i~~~~-~~v~v~~~dg~----~~~a  149 (372)
T PRK05868         80 N-ELFRDTESTPT-GGPVNSPDIELLRDDLVELLYGAT-QPSVE--YLFDDSISTLQDDG-DSVRVTFERAA----AREF  149 (372)
T ss_pred             C-EEeeccccccc-CCCCCCceEEEEHHHHHHHHHHhc-cCCcE--EEeCCEEEEEEecC-CeEEEEECCCC----eEEe
Confidence            0 00000000000 0000000 1123455555554422 23555  99999999998765 66778777654    6899


Q ss_pred             cEEEEccCCCCCCcc
Q 013303          156 DAVVVCNGHFSVPRL  170 (446)
Q Consensus       156 d~VVvAtG~~s~p~~  170 (446)
                      |.||-|.|.+|.-+.
T Consensus       150 dlvIgADG~~S~vR~  164 (372)
T PRK05868        150 DLVIGADGLHSNVRR  164 (372)
T ss_pred             CEEEECCCCCchHHH
Confidence            999999998776553

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.00  E-value=1.2e-09  Score=108.54  Aligned_cols=153  Identities=16%  Similarity=0.161  Sum_probs=82.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHC---CCcEEEEeeCCCcCcee-eeCCCCCCCCCCCCCCC--CCccCCccCceeecC-C
Q 013303            2 FRHVAVIGAGAAGLVVGHELLRE---GHTVVVYEKGEQVGGSW-IYTSETESDPLGVDPNR--YPVHSSLYKSLRVNL-P   74 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~---g~~v~v~e~~~~~GG~w-~~~~~~~~~~~g~~p~~--~~~~~~~y~~l~~~~-~   74 (446)
                      ++||+||||||+|+++|..|++.   |++|+|||+....+-.. .+...    ..++.|..  .+..-.+++.+.... +
T Consensus         3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~----~~~l~~~~~~~l~~lgl~~~~~~~~~~   78 (395)
T PRK05732          3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDAR----AIALAAGTCQQLARLGVWQALADCATP   78 (395)
T ss_pred             cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCcc----ceeccHHHHHHHHHCCChhhhHhhcCC
Confidence            57999999999999999999998   99999999953111000 00000    00011100  000001111111000 0


Q ss_pred             CCCcccCC------CCCCcCCCCCCCCC-CCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCceEEEEEeC
Q 013303           75 RELMGFQA------YPFVARNYEGSVDL-RRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKK  146 (446)
Q Consensus        75 ~~~~~~~d------~~~~~~~~~~~~~~-~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~  146 (446)
                      ...+.+.+      ..+...  +..... .....+..+.+.|.+.+... ++.  ++++++|+++...+ +.|.|++.++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~--~~~~~~v~~i~~~~-~~~~v~~~~g  153 (395)
T PRK05732         79 ITHIHVSDRGHAGFVRLDAE--DYGVPALGYVVELHDVGQRLFALLDKAPGVT--LHCPARVANVERTQ-GSVRVTLDDG  153 (395)
T ss_pred             ccEEEEecCCCCceEEeehh--hcCCCccEEEEEhHHHHHHHHHHHhcCCCcE--EEcCCEEEEEEEcC-CeEEEEECCC
Confidence            00000000      000000  000001 11234566777777766554 565  88999999998765 6788887665


Q ss_pred             CCceEEEEEcEEEEccCCCCC
Q 013303          147 DDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       147 ~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      .    ++.+|.||.|+|.++.
T Consensus       154 ~----~~~a~~vI~AdG~~S~  170 (395)
T PRK05732        154 E----TLTGRLLVAADGSHSA  170 (395)
T ss_pred             C----EEEeCEEEEecCCChh
Confidence            3    6899999999997654

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.99  E-value=6e-09  Score=78.24  Aligned_cols=80  Identities=23%  Similarity=0.334  Sum_probs=66.5

Q ss_pred             eEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCCC
Q 013303            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAY   83 (446)
Q Consensus         4 ~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d~   83 (446)
                      +|+|||||+.|+.+|..|++.|.+|+++++.+.+...                                           
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~-------------------------------------------   37 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPG-------------------------------------------   37 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTT-------------------------------------------
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhh-------------------------------------------
Confidence            6899999999999999999999999999998754100                                           


Q ss_pred             CCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC
Q 013303           84 PFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK  146 (446)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~  146 (446)
                                       -.+++.+++.++.++.|++  +++++.|.++...+++ .+|+++++
T Consensus        38 -----------------~~~~~~~~~~~~l~~~gV~--v~~~~~v~~i~~~~~~-~~V~~~~g   80 (80)
T PF00070_consen   38 -----------------FDPDAAKILEEYLRKRGVE--VHTNTKVKEIEKDGDG-VEVTLEDG   80 (80)
T ss_dssp             -----------------SSHHHHHHHHHHHHHTTEE--EEESEEEEEEEEETTS-EEEEEETS
T ss_pred             -----------------cCHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEeCCE-EEEEEecC
Confidence                             0157888999999999998  9999999999988744 66777653

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.97  E-value=2.1e-09  Score=107.06  Aligned_cols=154  Identities=16%  Similarity=0.093  Sum_probs=83.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeC-CC--cCceeeeCCCCC---------CCCCCCCCCCCCccCCccCce
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG-EQ--VGGSWIYTSETE---------SDPLGVDPNRYPVHSSLYKSL   69 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~-~~--~GG~w~~~~~~~---------~~~~g~~p~~~~~~~~~y~~l   69 (446)
                      .+||+||||||+|+++|..|++.|++|+|+|+. +.  ++...  ..+..         .+..|+-+.-.-.....+..+
T Consensus         4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~--~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~   81 (405)
T PRK08850          4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELP--DVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAM   81 (405)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCC--CcceecccHHHHHHHHhCCchhhhhhhhCCcccEE
Confidence            369999999999999999999999999999985 21  11100  00000         000111100000000111111


Q ss_pred             eecCCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCceEEEEEeCCC
Q 013303           70 RVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDD  148 (446)
Q Consensus        70 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~  148 (446)
                      ....... ....+++....   .............+.+.|.+.+.+. ++.  ++++++|++++..+ +.++|++.++. 
T Consensus        82 ~~~~~~~-~~~~~~~~~~~---~~~~~g~~~~~~~l~~~L~~~~~~~~~v~--v~~~~~v~~i~~~~-~~~~v~~~~g~-  153 (405)
T PRK08850         82 EVWEQDS-FARIEFDAESM---AQPDLGHIVENRVIQLALLEQVQKQDNVT--LLMPARCQSIAVGE-SEAWLTLDNGQ-  153 (405)
T ss_pred             EEEeCCC-CceEEEecccc---CCCccEEEEEHHHHHHHHHHHHhcCCCeE--EEcCCeeEEEEeeC-CeEEEEECCCC-
Confidence            1111100 00001111000   0000011123456666777766654 465  88999999998766 66777776543 


Q ss_pred             ceEEEEEcEEEEccCCCCCC
Q 013303          149 VVEEETFDAVVVCNGHFSVP  168 (446)
Q Consensus       149 ~~~~~~~d~VVvAtG~~s~p  168 (446)
                         ++++|.||.|.|.+|.-
T Consensus       154 ---~~~a~lvIgADG~~S~v  170 (405)
T PRK08850        154 ---ALTAKLVVGADGANSWL  170 (405)
T ss_pred             ---EEEeCEEEEeCCCCChh
Confidence               79999999999976643

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=98.97  E-value=2.3e-09  Score=104.53  Aligned_cols=61  Identities=25%  Similarity=0.302  Sum_probs=48.7

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceE-EEEEeCCCceEEEEEcEEEEccCCCCCC
Q 013303          100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSRKKDDVVEEETFDAVVVCNGHFSVP  168 (446)
Q Consensus       100 ~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~-v~~~~~~~~~~~~~~d~VVvAtG~~s~p  168 (446)
                      .....+.+.+.+.+++.|+.  ++.+++|++|...+ +.|+ |.+.++     .+.+|.||+|+|.++..
T Consensus       144 i~~~~l~~~l~~~~~~~Gv~--i~~~~~V~~i~~~~-~~v~gv~~~~g-----~i~ad~vV~a~G~~s~~  205 (358)
T PF01266_consen  144 IDPRRLIQALAAEAQRAGVE--IRTGTEVTSIDVDG-GRVTGVRTSDG-----EIRADRVVLAAGAWSPQ  205 (358)
T ss_dssp             EEHHHHHHHHHHHHHHTT-E--EEESEEEEEEEEET-TEEEEEEETTE-----EEEECEEEE--GGGHHH
T ss_pred             ccccchhhhhHHHHHHhhhh--ccccccccchhhcc-ccccccccccc-----ccccceeEeccccccee
Confidence            45689999999999999988  99999999999887 7787 777654     59999999999975543

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK06996 hypothetical protein; Provisional

Probab=98.96  E-value=6e-09  Score=103.46  Aligned_cols=145  Identities=17%  Similarity=0.129  Sum_probs=85.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCC----CcEEEEeeCCCcCceeeeCCCCC---------CCCCCCCCCCCCccCCccCc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREG----HTVVVYEKGEQVGGSWIYTSETE---------SDPLGVDPNRYPVHSSLYKS   68 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g----~~v~v~e~~~~~GG~w~~~~~~~---------~~~~g~~p~~~~~~~~~y~~   68 (446)
                      .+||+||||||+|+++|..|++.|    ++|+|+|+.+... ... ..+..         .+..|.-+.    ....+..
T Consensus        11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~-~~~-~~r~~~l~~~~~~~L~~lg~~~~----~~~~~~~   84 (398)
T PRK06996         11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAA-SAN-DPRAIALSHGSRVLLETLGAWPA----DATPIEH   84 (398)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCc-CCC-CceEEEecHHHHHHHHhCCCchh----cCCcccE
Confidence            479999999999999999999987    4799999975321 000 00000         001111000    0001111


Q ss_pred             eeecC--C--CCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEE
Q 013303           69 LRVNL--P--RELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSR  144 (446)
Q Consensus        69 l~~~~--~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~  144 (446)
                      +....  .  ...+...++..+.        .....++.++.+.|.+.+...++.  +.++++|+.++... +.++++..
T Consensus        85 ~~~~~~~~~g~~~~~~~~~~~~~--------~g~~v~r~~l~~~L~~~~~~~g~~--~~~~~~v~~~~~~~-~~v~v~~~  153 (398)
T PRK06996         85 IHVSQRGHFGRTLIDRDDHDVPA--------LGYVVRYGSLVAALARAVRGTPVR--WLTSTTAHAPAQDA-DGVTLALG  153 (398)
T ss_pred             EEEecCCCCceEEecccccCCCc--------CEEEEEhHHHHHHHHHHHHhCCCE--EEcCCeeeeeeecC-CeEEEEEC
Confidence            11100  0  0011111111110        111246688999999998888876  88999999998766 67888776


Q ss_pred             eCCCceEEEEEcEEEEccCC
Q 013303          145 KKDDVVEEETFDAVVVCNGH  164 (446)
Q Consensus       145 ~~~~~~~~~~~d~VVvAtG~  164 (446)
                      ++++. +++++|.||.|.|.
T Consensus       154 ~~~g~-~~i~a~lvIgADG~  172 (398)
T PRK06996        154 TPQGA-RTLRARIAVQAEGG  172 (398)
T ss_pred             CCCcc-eEEeeeEEEECCCC
Confidence            54332 47999999999994

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=98.96  E-value=6.7e-09  Score=103.76  Aligned_cols=148  Identities=16%  Similarity=0.173  Sum_probs=83.2

Q ss_pred             CeEEEECcChHHHHHHHHHHHCC-CcEEEEeeCCCcCc---eeeeCCCCC--CCCCCCCCCC---CCccCCccCce----
Q 013303            3 RHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGG---SWIYTSETE--SDPLGVDPNR---YPVHSSLYKSL----   69 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g-~~v~v~e~~~~~GG---~w~~~~~~~--~~~~g~~p~~---~~~~~~~y~~l----   69 (446)
                      .+|+|||||++||++|..|++.| ++|+|||+.+.++.   .....+..-  .+..|+....   .......+...    
T Consensus         1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~   80 (414)
T TIGR03219         1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEW   80 (414)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEE
Confidence            47999999999999999999998 59999999876532   111111000  0001110000   00000000000    


Q ss_pred             eecCCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCc
Q 013303           70 RVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV  149 (446)
Q Consensus        70 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~  149 (446)
                      ..........   ......      ....-.++.++.+.|.+.+..  .  .++++++|++++..+ +.|+|+..++.  
T Consensus        81 ~~~~~~~~~~---~~~~~~------~~~~~i~R~~l~~~L~~~~~~--~--~v~~~~~v~~i~~~~-~~~~v~~~~g~--  144 (414)
T TIGR03219        81 RNGSDASYLG---ATIAPG------VGQSSVHRADFLDALLKHLPE--G--IASFGKRATQIEEQA-EEVQVLFTDGT--  144 (414)
T ss_pred             EecCccceee---eecccc------CCcccCCHHHHHHHHHHhCCC--c--eEEcCCEEEEEEecC-CcEEEEEcCCC--
Confidence            0000000000   000000      011124667777777765532  2  278999999998766 67988887654  


Q ss_pred             eEEEEEcEEEEccCCCCCC
Q 013303          150 VEEETFDAVVVCNGHFSVP  168 (446)
Q Consensus       150 ~~~~~~d~VVvAtG~~s~p  168 (446)
                        ++.+|.||+|+|.+|.-
T Consensus       145 --~~~ad~vVgADG~~S~v  161 (414)
T TIGR03219       145 --EYRCDLLIGADGIKSAL  161 (414)
T ss_pred             --EEEeeEEEECCCccHHH
Confidence              68999999999987753

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=98.96  E-value=9.2e-09  Score=101.77  Aligned_cols=158  Identities=20%  Similarity=0.237  Sum_probs=84.8

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc------CceeeeCCCCC-CCCCCCCCCCCCccCCccCceeecC
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV------GGSWIYTSETE-SDPLGVDPNRYPVHSSLYKSLRVNL   73 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~------GG~w~~~~~~~-~~~~g~~p~~~~~~~~~y~~l~~~~   73 (446)
                      |.+||+||||||+|+++|..|++.|++|+|||+.+..      |.......... .+..|+-.... -.......+....
T Consensus         1 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~-~~~~~~~~~~~~~   79 (390)
T TIGR02360         1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMD-REGLVHEGTEIAF   79 (390)
T ss_pred             CCceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHH-hcCceecceEEee
Confidence            6789999999999999999999999999999998741      11111000000 00111100000 0000111111100


Q ss_pred             CCCCcccCCCCCCcCCCCCCCCCCC-CCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEE
Q 013303           74 PRELMGFQAYPFVARNYEGSVDLRR-YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEE  152 (446)
Q Consensus        74 ~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~  152 (446)
                      ...   ...+++...    ...... ......+.+.|.+.+...+..  ++++++++.+...+.+...|++.. +++..+
T Consensus        80 ~~~---~~~~~~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~g~~--~~~~~~~v~~~~~~~~~~~V~~~~-~g~~~~  149 (390)
T TIGR02360        80 DGQ---RFRIDLKAL----TGGKTVMVYGQTEVTRDLMEAREAAGLT--TVYDADDVRLHDLAGDRPYVTFER-DGERHR  149 (390)
T ss_pred             CCE---EEEEecccc----CCCceEEEeCHHHHHHHHHHHHHhcCCe--EEEeeeeEEEEecCCCccEEEEEE-CCeEEE
Confidence            110   011112111    000010 112345666677767777766  888888877754332456677652 223347


Q ss_pred             EEEcEEEEccCCCCCCc
Q 013303          153 ETFDAVVVCNGHFSVPR  169 (446)
Q Consensus       153 ~~~d~VVvAtG~~s~p~  169 (446)
                      +++|.||.|.|.+|.-+
T Consensus       150 i~adlvIGADG~~S~VR  166 (390)
T TIGR02360       150 LDCDFIAGCDGFHGVSR  166 (390)
T ss_pred             EEeCEEEECCCCchhhH
Confidence            89999999999887654

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=98.95  E-value=9.3e-09  Score=100.34  Aligned_cols=162  Identities=22%  Similarity=0.187  Sum_probs=94.0

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCC--CcEEEEeeCCCcCceeee-CCCCCCCCCCCCCCC-------------------
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIY-TSETESDPLGVDPNR-------------------   58 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g--~~v~v~e~~~~~GG~w~~-~~~~~~~~~g~~p~~-------------------   58 (446)
                      +++||+|||||+.|+++|.+|++++  ++|+|+||.+.+|..-.. +..+.+.-+-..|..                   
T Consensus         2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq   81 (429)
T COG0579           2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ   81 (429)
T ss_pred             CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence            4679999999999999999999998  999999999988732211 111111100001110                   


Q ss_pred             ---CCcc----------------CCccCceeecCCCCCcccCCC----CCCcCCCCC-----CCCCCCCCCHHHHHHHHH
Q 013303           59 ---YPVH----------------SSLYKSLRVNLPRELMGFQAY----PFVARNYEG-----SVDLRRYPGHEEVLRYLQ  110 (446)
Q Consensus        59 ---~~~~----------------~~~y~~l~~~~~~~~~~~~d~----~~~~~~~~~-----~~~~~~~~~~~~v~~yl~  110 (446)
                         .+..                ...|+.+..|... .+...|-    .+.+...+.     ......-....++...+.
T Consensus        82 ~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~-~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~  160 (429)
T COG0579          82 LGIPFINCGKLSVATGEEEVERLEKLYERGKANGVF-DLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALA  160 (429)
T ss_pred             hCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCc-ceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHH
Confidence               0000                0112222222222 1111110    011100000     011122234466777777


Q ss_pred             HHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCCC
Q 013303          111 NFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVP  168 (446)
Q Consensus       111 ~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~p  168 (446)
                      +.+.+.|..  +++|++|+.|++.+++.+.+.+.+++  .. ++++.||+|.|.++.+
T Consensus       161 e~a~~~g~~--i~ln~eV~~i~~~~dg~~~~~~~~g~--~~-~~ak~Vin~AGl~Ad~  213 (429)
T COG0579         161 EEAQANGVE--LRLNTEVTGIEKQSDGVFVLNTSNGE--ET-LEAKFVINAAGLYADP  213 (429)
T ss_pred             HHHHHcCCE--EEecCeeeEEEEeCCceEEEEecCCc--EE-EEeeEEEECCchhHHH
Confidence            788888888  99999999999988445666666654  22 9999999999987654

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=98.95  E-value=7.9e-09  Score=102.49  Aligned_cols=59  Identities=20%  Similarity=0.247  Sum_probs=47.6

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCC
Q 013303          100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFS  166 (446)
Q Consensus       100 ~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s  166 (446)
                      .....+.+.|.+.+++.|+.  +.++++|.+++..+ +.|.|.+.++     ++.+|.||+|+|.++
T Consensus       146 vd~~~l~~aL~~~~~~~Gv~--i~~~~~V~~i~~~~-~~~~V~~~~g-----~i~ad~vV~A~G~~s  204 (393)
T PRK11728        146 VDYRAVAEAMAELIQARGGE--IRLGAEVTALDEHA-NGVVVRTTQG-----EYEARTLINCAGLMS  204 (393)
T ss_pred             ECHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEecC-CeEEEEECCC-----EEEeCEEEECCCcch
Confidence            35678888888888888887  89999999998765 6677766432     689999999999765

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.94  E-value=2.3e-08  Score=100.63  Aligned_cols=161  Identities=21%  Similarity=0.247  Sum_probs=89.7

Q ss_pred             eEEEECcChHHHHHHHHHHHCC-CcEEEEeeCCCcCceeeeCCCC----CC---CCCCCCCCCC-Cc-----------cC
Q 013303            4 HVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGSWIYTSET----ES---DPLGVDPNRY-PV-----------HS   63 (446)
Q Consensus         4 ~V~IIGaG~aGl~aA~~l~~~g-~~v~v~e~~~~~GG~w~~~~~~----~~---~~~g~~p~~~-~~-----------~~   63 (446)
                      ||+|||||.||++||..+++.| .+|+|+|+.+..||.-......    ..   ...|...+.. ..           ..
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   80 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP   80 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence            7999999999999999999999 9999999998877653321100    00   0001100000 00           00


Q ss_pred             CccCceeecCCCC--CcccCCCCCCcC--CCCCCC-------CCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEE
Q 013303           64 SLYKSLRVNLPRE--LMGFQAYPFVAR--NYEGSV-------DLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNAR  132 (446)
Q Consensus        64 ~~y~~l~~~~~~~--~~~~~d~~~~~~--~~~~~~-------~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~  132 (446)
                      .+.+.+..+.+..  ++. ...++...  ......       .......+.++.+.|.+.+++.+++  ++++++|+++.
T Consensus        81 ~l~~~~~~~~~~~i~wl~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~--i~~~~~v~~l~  157 (439)
T TIGR01813        81 ELVRILAEESADAVDWLQ-DGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGID--TRLNSKVEDLI  157 (439)
T ss_pred             HHHHHHHhccHHHHHHHH-hCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCE--EEeCCEeeEeE
Confidence            0000000011000  001 01111100  000000       0011235578899999999999988  99999999998


Q ss_pred             EcCCCc-eEEEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303          133 LVESNK-WKVKSRKKDDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       133 ~~~~~~-~~v~~~~~~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      .++++. +-|.+.+..+....+.++.||+|||.++.
T Consensus       158 ~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~  193 (439)
T TIGR01813       158 QDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS  193 (439)
T ss_pred             ECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence            754332 33445443344446789999999997664

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.93  E-value=2.1e-10  Score=114.59  Aligned_cols=148  Identities=22%  Similarity=0.203  Sum_probs=36.5

Q ss_pred             eEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCCC
Q 013303            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAY   83 (446)
Q Consensus         4 ~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d~   83 (446)
                      ||+|||||+||++||..+++.|.+|+|+|+.+.+||..........+.....   ......++..+......    ....
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~---~~~~~gi~~e~~~~~~~----~~~~   73 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDE---DQVIGGIFREFLNRLRA----RGGY   73 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHH---HHHHHHHHHHHHHST----------
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchh---hccCCCHHHHHHHHHhh----hccc
Confidence            8999999999999999999999999999999999998764311000000000   00000011111100000    0000


Q ss_pred             CCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccC
Q 013303           84 PFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNG  163 (446)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG  163 (446)
                      +....   ...........+.+...+.+.+.+.|++  +.+++.|..+..+++.-+.|.+.+..+ ..++.++.+|-|||
T Consensus        74 ~~~~~---~~~~~~~~~~~~~~~~~l~~~l~e~gv~--v~~~t~v~~v~~~~~~i~~V~~~~~~g-~~~i~A~~~IDaTG  147 (428)
T PF12831_consen   74 PQEDR---YGWVSNVPFDPEVFKAVLDEMLAEAGVE--VLLGTRVVDVIRDGGRITGVIVETKSG-RKEIRAKVFIDATG  147 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccc---cccccccccccccccccccccccccccc--ccccccccccccccccccccccccccc-cccccccccccccc
Confidence            00000   0000011234456666778888888998  999999999988753345566655333 46899999999999


Q ss_pred             C
Q 013303          164 H  164 (446)
Q Consensus       164 ~  164 (446)
                      -
T Consensus       148 ~  148 (428)
T PF12831_consen  148 D  148 (428)
T ss_dssp             -
T ss_pred             c
Confidence            4

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=98.92  E-value=3.5e-09  Score=106.43  Aligned_cols=155  Identities=14%  Similarity=0.140  Sum_probs=85.5

Q ss_pred             CeEEEECcChHHHHHHHHHHH----CCCcEEEEeeCCCcCce---eeeCCC-CCCCCCCCCCCC-C-CccCCccCc----
Q 013303            3 RHVAVIGAGAAGLVVGHELLR----EGHTVVVYEKGEQVGGS---WIYTSE-TESDPLGVDPNR-Y-PVHSSLYKS----   68 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~----~g~~v~v~e~~~~~GG~---w~~~~~-~~~~~~g~~p~~-~-~~~~~~y~~----   68 (446)
                      +||+||||||+|+++|..|++    .|++|+|||+.+.+.-.   +..... ......+..|.. . +-.-.+++.    
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~   80 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD   80 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence            589999999999999999998    79999999995322100   000000 000000111100 0 000011111    


Q ss_pred             -------eeecCCC--CCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhC---CCCcEEeCeEEEEEEEc--
Q 013303           69 -------LRVNLPR--ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG---VDQVVRLHTEVLNARLV--  134 (446)
Q Consensus        69 -------l~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~---l~~~i~~~~~V~~v~~~--  134 (446)
                             +......  ....|...+   .    ........++..+.+.|.+.+.+.+   +.  ++++++|++++..  
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~--i~~~~~v~~i~~~~~  151 (437)
T TIGR01989        81 RIQPFGRMQVWDGCSLALIRFDRDN---G----KEDMACIIENDNIQNSLYNRLQEYNGDNVK--ILNPARLISVTIPSK  151 (437)
T ss_pred             cCCceeeEEEecCCCCceEEeecCC---C----CCceEEEEEHHHHHHHHHHHHHhCCCCCeE--EecCCeeEEEEeccc
Confidence                   1110000  011111110   0    0001122467788888888887764   55  8999999999752  


Q ss_pred             ----CCCceEEEEEeCCCceEEEEEcEEEEccCCCCCCcc
Q 013303          135 ----ESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRL  170 (446)
Q Consensus       135 ----~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~p~~  170 (446)
                          .....+|++.++.    ++++|.||.|.|.+|.-+.
T Consensus       152 ~~~~~~~~v~v~~~~g~----~i~a~llVgADG~~S~vR~  187 (437)
T TIGR01989       152 YPNDNSNWVHITLSDGQ----VLYTKLLIGADGSNSNVRK  187 (437)
T ss_pred             cccCCCCceEEEEcCCC----EEEeeEEEEecCCCChhHH
Confidence                1145667665543    7999999999998776543

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=98.91  E-value=1.8e-08  Score=102.91  Aligned_cols=64  Identities=19%  Similarity=0.189  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEEEEccCCCCCC
Q 013303          102 HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFSVP  168 (446)
Q Consensus       102 ~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~VVvAtG~~s~p  168 (446)
                      ...+...+...+.+.|..  +..+++|+++...+ +.|.|++.+. .++..++.++.||+|+|.++..
T Consensus       154 ~~rl~~~l~~~A~~~Ga~--i~~~~~V~~i~~~~-~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~  218 (508)
T PRK12266        154 DARLVVLNARDAAERGAE--ILTRTRVVSARREN-GLWHVTLEDTATGKRYTVRARALVNAAGPWVKQ  218 (508)
T ss_pred             HHHHHHHHHHHHHHcCCE--EEcCcEEEEEEEeC-CEEEEEEEEcCCCCEEEEEcCEEEECCCccHHH
Confidence            344555566668888988  89999999998765 6788887762 2334579999999999987643

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=98.89  E-value=2.1e-08  Score=100.08  Aligned_cols=64  Identities=22%  Similarity=0.223  Sum_probs=47.7

Q ss_pred             CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCC-ceEEEEEcEEEEccCCCCC
Q 013303          101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDD-VVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       101 ~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~-~~~~~~~d~VVvAtG~~s~  167 (446)
                      ....+...|.+.+++.|+.  ++++++|++++..+ +.|++.+.++.+ +..++.+|+||+|+|.++.
T Consensus       195 ~~~~~~~~l~~~a~~~G~~--i~~~~~V~~i~~~~-~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~  259 (410)
T PRK12409        195 DIHKFTTGLAAACARLGVQ--FRYGQEVTSIKTDG-GGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSR  259 (410)
T ss_pred             CHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEeC-CEEEEEEEcCCCCccceEecCEEEECCCcChH
Confidence            3456667777888888987  89999999998765 667776655321 1236899999999998764

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.88  E-value=1.5e-08  Score=102.89  Aligned_cols=159  Identities=20%  Similarity=0.239  Sum_probs=86.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCC--cCceeeeCCCC------CCCCCCCCCCCCCccCCccCce----
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ--VGGSWIYTSET------ESDPLGVDPNRYPVHSSLYKSL----   69 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~--~GG~w~~~~~~------~~~~~g~~p~~~~~~~~~y~~l----   69 (446)
                      ..||+|||||++|++||..+++.|.+|+|+||.+.  .||.-......      ..+..+..-+.    ...+..+    
T Consensus         4 ~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~   79 (466)
T PRK08274          4 MVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPE----EEFWQDLLRVT   79 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccH----HHHHHHHHHhh
Confidence            47999999999999999999999999999999864  55532221110      00000000000    0000000    


Q ss_pred             ------------eecCCCC--CcccCCCCCCcCCCCCC--CCCCC--CCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEE
Q 013303           70 ------------RVNLPRE--LMGFQAYPFVARNYEGS--VDLRR--YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNA  131 (446)
Q Consensus        70 ------------~~~~~~~--~~~~~d~~~~~~~~~~~--~~~~~--~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v  131 (446)
                                  ..+.+..  .+.-...+|........  .....  ...+..+...|.+.+++.++.  ++++++|+++
T Consensus        80 ~~~~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~--i~~~t~v~~l  157 (466)
T PRK08274         80 GGRTDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVE--IRYDAPVTAL  157 (466)
T ss_pred             CCCCCHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCE--EEcCCEEEEE
Confidence                        0000000  00000111111000000  00000  112467888888889998988  9999999999


Q ss_pred             EEcCCCceE-EEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303          132 RLVESNKWK-VKSRKKDDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       132 ~~~~~~~~~-v~~~~~~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      ...+ ++.. |.+...++....+.++.||+|||.+..
T Consensus       158 ~~~~-g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~  193 (466)
T PRK08274        158 ELDD-GRFVGARAGSAAGGAERIRAKAVVLAAGGFES  193 (466)
T ss_pred             EecC-CeEEEEEEEccCCceEEEECCEEEECCCCCCC
Confidence            8754 4433 444333334457889999999997543

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.88  E-value=1.6e-08  Score=103.41  Aligned_cols=65  Identities=20%  Similarity=0.239  Sum_probs=50.8

Q ss_pred             CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCCC
Q 013303          101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVP  168 (446)
Q Consensus       101 ~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~p  168 (446)
                      ....+...+...+.+.|..  +..+++|+++...+ +.|.|++.++.++..++.++.||+|+|.++..
T Consensus       153 d~~rl~~~l~~~a~~~Ga~--i~~~~~V~~i~~~~-~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~  217 (502)
T PRK13369        153 DDARLVVLNALDAAERGAT--ILTRTRCVSARREG-GLWRVETRDADGETRTVRARALVNAAGPWVTD  217 (502)
T ss_pred             cHHHHHHHHHHHHHHCCCE--EecCcEEEEEEEcC-CEEEEEEEeCCCCEEEEEecEEEECCCccHHH
Confidence            3455666666778888987  99999999998875 67888887765555679999999999987643

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=98.87  E-value=3.6e-08  Score=103.02  Aligned_cols=163  Identities=18%  Similarity=0.141  Sum_probs=88.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHC-CCcEEEEeeCCCc---CceeeeCCCCC--CCCCCCCCCC-----CCccCCccCcee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQV---GGSWIYTSETE--SDPLGVDPNR-----YPVHSSLYKSLR   70 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~-g~~v~v~e~~~~~---GG~w~~~~~~~--~~~~g~~p~~-----~~~~~~~y~~l~   70 (446)
                      ..||+||||||+||++|..|++. |++|+|||+.+..   |-.....+++-  .+..|+....     .......|..- 
T Consensus        32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~-  110 (634)
T PRK08294         32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPD-  110 (634)
T ss_pred             CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCC-
Confidence            46999999999999999999995 9999999987643   10000000000  0001110000     00000011100 


Q ss_pred             ecCCCCCcc---cCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCC--ceEEEEEe
Q 013303           71 VNLPRELMG---FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN--KWKVKSRK  145 (446)
Q Consensus        71 ~~~~~~~~~---~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~--~~~v~~~~  145 (446)
                      ......+..   +.+.+...     ........+...+.+.|.+.+.+.+....++++++|++++..+++  ..+|++++
T Consensus       111 ~~~~~~i~r~~~~~~~~~~~-----~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~  185 (634)
T PRK08294        111 PADPSTIVRTGRVQDTEDGL-----SEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRR  185 (634)
T ss_pred             CccccceeccccccccCCCC-----CCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEE
Confidence            000000000   01111000     000112245667888888888877643237899999999876422  36777765


Q ss_pred             C----CCceEEEEEcEEEEccCCCCCCcc
Q 013303          146 K----DDVVEEETFDAVVVCNGHFSVPRL  170 (446)
Q Consensus       146 ~----~~~~~~~~~d~VVvAtG~~s~p~~  170 (446)
                      .    .++.+++++|+||-|.|.+|.-+.
T Consensus       186 ~~~~~~g~~~tv~A~~lVGaDGa~S~VR~  214 (634)
T PRK08294        186 TDGEHEGEEETVRAKYVVGCDGARSRVRK  214 (634)
T ss_pred             CCCCCCCceEEEEeCEEEECCCCchHHHH
Confidence            3    234468999999999998776553

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=98.86  E-value=2.7e-08  Score=98.03  Aligned_cols=65  Identities=17%  Similarity=0.176  Sum_probs=49.3

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCCCccC
Q 013303           99 YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLA  171 (446)
Q Consensus        99 ~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~p~~p  171 (446)
                      +.....+...+.+.+.+.++.  ++++++|+++...+ +.|.|++.++     ++.+|.||+|+|.++....+
T Consensus       145 ~v~p~~~~~~~~~~~~~~gv~--i~~~~~v~~i~~~~-~~~~v~~~~g-----~~~a~~vV~A~G~~~~~l~~  209 (376)
T PRK11259        145 FLRPELAIKAHLRLAREAGAE--LLFNEPVTAIEADG-DGVTVTTADG-----TYEAKKLVVSAGAWVKDLLP  209 (376)
T ss_pred             EEcHHHHHHHHHHHHHHCCCE--EECCCEEEEEEeeC-CeEEEEeCCC-----EEEeeEEEEecCcchhhhcc
Confidence            445567777777777778887  88999999998866 6677776543     58999999999987654444

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.85  E-value=1.3e-08  Score=103.37  Aligned_cols=142  Identities=16%  Similarity=0.223  Sum_probs=77.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeC-CCcCceeeeCCCCCCCCCCCCCCCCCcc-CCccCcee------e-c
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG-EQVGGSWIYTSETESDPLGVDPNRYPVH-SSLYKSLR------V-N   72 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~-~~~GG~w~~~~~~~~~~~g~~p~~~~~~-~~~y~~l~------~-~   72 (446)
                      .+||+|||||+||+.||..+++.|.+|+++|+. +.+|+.            +|+|+..-+. ....+.+.      . .
T Consensus         4 ~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m------------~CnpsiGG~akg~lvrEidalGg~~g~~   71 (618)
T PRK05192          4 EYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQM------------SCNPAIGGIAKGHLVREIDALGGEMGKA   71 (618)
T ss_pred             cceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccccc------------CCccccccchhhHHHHHHHhcCCHHHHH
Confidence            479999999999999999999999999999987 356542            1111110000 00000000      0 0


Q ss_pred             CCCCCcccCCCCCCcCCC-CCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCc-eEEEEEeCCCc
Q 013303           73 LPRELMGFQAYPFVARNY-EGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNK-WKVKSRKKDDV  149 (446)
Q Consensus        73 ~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~~~~~  149 (446)
                      ......   ++.+..... +.......-..+..+...+.+.+... ++.  + +.++|..+...+ +. ..|.+.++   
T Consensus        72 ~d~~gi---q~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~--I-~q~~V~~Li~e~-grV~GV~t~dG---  141 (618)
T PRK05192         72 IDKTGI---QFRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLD--L-FQGEVEDLIVEN-GRVVGVVTQDG---  141 (618)
T ss_pred             HhhccC---ceeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcE--E-EEeEEEEEEecC-CEEEEEEECCC---
Confidence            000000   011100000 00000111234566777777777655 565  4 577888887654 33 23555443   


Q ss_pred             eEEEEEcEEEEccCCCC
Q 013303          150 VEEETFDAVVVCNGHFS  166 (446)
Q Consensus       150 ~~~~~~d~VVvAtG~~s  166 (446)
                       ..+.++.||+|||.+.
T Consensus       142 -~~I~Ak~VIlATGTFL  157 (618)
T PRK05192        142 -LEFRAKAVVLTTGTFL  157 (618)
T ss_pred             -CEEECCEEEEeeCcch
Confidence             3799999999999644

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.84  E-value=8.2e-08  Score=98.11  Aligned_cols=162  Identities=18%  Similarity=0.178  Sum_probs=87.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCC-------CCCCCCCCC-CCc-----------c
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETES-------DPLGVDPNR-YPV-----------H   62 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~-------~~~g~~p~~-~~~-----------~   62 (446)
                      ..||+|||||.||++||..+++.|.+|+|+|+.+.+||.-......-.       ...|...+. .+.           .
T Consensus        61 ~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~d  140 (506)
T PRK06481         61 KYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTND  140 (506)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCCC
Confidence            469999999999999999999999999999999888874322110000       000000000 000           0


Q ss_pred             CCccCceeecCCCCCccc---CCCCCCcCC-CCC------CCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEE
Q 013303           63 SSLYKSLRVNLPRELMGF---QAYPFVARN-YEG------SVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNAR  132 (446)
Q Consensus        63 ~~~y~~l~~~~~~~~~~~---~d~~~~~~~-~~~------~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~  132 (446)
                      ..+.+.+..+.+. .+.+   ...+|.... ...      .........+..+.+.|.+.+++.+++  +.+++.|+++.
T Consensus       141 ~~l~~~~~~~s~~-~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~--i~~~t~v~~l~  217 (506)
T PRK06481        141 KALLRYFVDNSAS-AIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIP--LFVNADVTKIT  217 (506)
T ss_pred             HHHHHHHHhccHH-HHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCe--EEeCCeeEEEE
Confidence            0000000001100 0000   001111000 000      000001123456778888888888888  99999999997


Q ss_pred             EcCCCce-EEEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303          133 LVESNKW-KVKSRKKDDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       133 ~~~~~~~-~v~~~~~~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      ..+ +.. -|.+...+++..++.++.||+|||.+..
T Consensus       218 ~~~-g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~  252 (506)
T PRK06481        218 EKD-GKVTGVKVKINGKETKTISSKAVVVTTGGFGA  252 (506)
T ss_pred             ecC-CEEEEEEEEeCCCeEEEEecCeEEEeCCCccc
Confidence            654 432 2334333333457899999999997654

>PLN02985 squalene monooxygenase

Probab=98.83  E-value=2.8e-08  Score=101.30  Aligned_cols=161  Identities=17%  Similarity=0.188  Sum_probs=82.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcC----ceeeeCCCCC-CCCCCCCCCCCCccCCccCceeecCCCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG----GSWIYTSETE-SDPLGVDPNRYPVHSSLYKSLRVNLPRE   76 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G----G~w~~~~~~~-~~~~g~~p~~~~~~~~~y~~l~~~~~~~   76 (446)
                      .+||+|||||++|+++|..|++.|++|+|+|+.....    |.+....... .+..|...............+.......
T Consensus        43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~~g~  122 (514)
T PLN02985         43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKDGK  122 (514)
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEECCE
Confidence            4699999999999999999999999999999974321    1111100000 0001111100000000111111111000


Q ss_pred             CcccCCCCCCcCCCCCCCC-CCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCc-eEEEEEeCCCceEEE
Q 013303           77 LMGFQAYPFVARNYEGSVD-LRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNK-WKVKSRKKDDVVEEE  153 (446)
Q Consensus        77 ~~~~~d~~~~~~~~~~~~~-~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~~~~~~~~~  153 (446)
                      .. ..+|+....  ..... .....++.++.+.|.+.+.+. ++.  +..+ +|+.+..++ +. -.|++...+++..++
T Consensus       123 ~~-~~~~~~~~~--~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~--i~~g-tvv~li~~~-~~v~gV~~~~~dG~~~~~  195 (514)
T PLN02985        123 EA-VAPFPVDNN--NFPYEPSARSFHNGRFVQRLRQKASSLPNVR--LEEG-TVKSLIEEK-GVIKGVTYKNSAGEETTA  195 (514)
T ss_pred             EE-EEeCCCCCc--CCCcccceeeeecHHHHHHHHHHHHhCCCeE--EEee-eEEEEEEcC-CEEEEEEEEcCCCCEEEE
Confidence            00 011221110  00000 112345678888888888765 454  5544 566665443 32 235554444445567


Q ss_pred             EEcEEEEccCCCCCCc
Q 013303          154 TFDAVVVCNGHFSVPR  169 (446)
Q Consensus       154 ~~d~VVvAtG~~s~p~  169 (446)
                      .+|.||.|+|.+|.-+
T Consensus       196 ~AdLVVgADG~~S~vR  211 (514)
T PLN02985        196 LAPLTVVCDGCYSNLR  211 (514)
T ss_pred             ECCEEEECCCCchHHH
Confidence            8999999999877544

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.82  E-value=1.2e-07  Score=96.39  Aligned_cols=141  Identities=18%  Similarity=0.226  Sum_probs=92.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||++|+.+|..|++.|.+|+++|+.+.+..                                          
T Consensus       180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~------------------------------------------  217 (472)
T PRK05976        180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILP------------------------------------------  217 (472)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCC------------------------------------------
Confidence            46899999999999999999999999999999764300                                          


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                      .+  ..++.+.+.+..++.|++  ++++++|..++...++...+.... +++..++.+|.||+|
T Consensus       218 ----------------~~--~~~~~~~l~~~l~~~gI~--i~~~~~v~~i~~~~~~~~~~~~~~-~g~~~~i~~D~vi~a  276 (472)
T PRK05976        218 ----------------TE--DAELSKEVARLLKKLGVR--VVTGAKVLGLTLKKDGGVLIVAEH-NGEEKTLEADKVLVS  276 (472)
T ss_pred             ----------------cC--CHHHHHHHHHHHHhcCCE--EEeCcEEEEEEEecCCCEEEEEEe-CCceEEEEeCEEEEe
Confidence                            00  146677787888888988  999999999975211333332221 233357899999999


Q ss_pred             cCCCCCCccCCC--CC--CCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHH
Q 013303          162 NGHFSVPRLAQV--PG--IDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLD  211 (446)
Q Consensus       162 tG~~s~p~~p~i--~G--~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~e  211 (446)
                      +|  ..|+.+.+  ..  +..-.|.+.....++.    ...+|.++|....+..
T Consensus       277 ~G--~~p~~~~l~l~~~~~~~~~g~i~Vd~~l~t----s~~~IyAiGD~~~~~~  324 (472)
T PRK05976        277 VG--RRPNTEGIGLENTDIDVEGGFIQIDDFCQT----KERHIYAIGDVIGEPQ  324 (472)
T ss_pred             eC--CccCCCCCCchhcCceecCCEEEECCCccc----CCCCEEEeeecCCCcc
Confidence            99  77776543  11  1111122222111111    2367889997654433

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.82  E-value=6.3e-08  Score=95.49  Aligned_cols=101  Identities=23%  Similarity=0.312  Sum_probs=79.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+...                                         
T Consensus       141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~-----------------------------------------  179 (377)
T PRK04965        141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS-----------------------------------------  179 (377)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch-----------------------------------------
Confidence            368999999999999999999999999999987543100                                         


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                      .+  ..++..++.+..++.++.  +.++++|.++.... +.+.|++.++.    ++.+|.||+|
T Consensus       180 ----------------~~--~~~~~~~l~~~l~~~gV~--i~~~~~v~~i~~~~-~~~~v~~~~g~----~i~~D~vI~a  234 (377)
T PRK04965        180 ----------------LM--PPEVSSRLQHRLTEMGVH--LLLKSQLQGLEKTD-SGIRATLDSGR----SIEVDAVIAA  234 (377)
T ss_pred             ----------------hC--CHHHHHHHHHHHHhCCCE--EEECCeEEEEEccC-CEEEEEEcCCc----EEECCEEEEC
Confidence                            00  035667777888888887  88999999998765 56777776543    7999999999


Q ss_pred             cCCCCCCcc
Q 013303          162 NGHFSVPRL  170 (446)
Q Consensus       162 tG~~s~p~~  170 (446)
                      +|  ..|+.
T Consensus       235 ~G--~~p~~  241 (377)
T PRK04965        235 AG--LRPNT  241 (377)
T ss_pred             cC--CCcch
Confidence            99  55653

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.82  E-value=4.8e-09  Score=75.73  Aligned_cols=38  Identities=37%  Similarity=0.589  Sum_probs=35.1

Q ss_pred             EECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeC
Q 013303            7 VIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT   44 (446)
Q Consensus         7 IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~   44 (446)
                      |||||++||++|..|++.|++|+|||+++.+||.+...
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~   38 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSF   38 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEE
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEE
Confidence            89999999999999999999999999999999988753

...

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.81  E-value=2.1e-08  Score=105.92  Aligned_cols=62  Identities=19%  Similarity=0.279  Sum_probs=47.4

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCCC
Q 013303           99 YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVP  168 (446)
Q Consensus        99 ~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~p  168 (446)
                      +.....+...+.+.++. |+.  ++++++|+++...+ +.|+|.+.++.    .+.+|.||+|+|.++..
T Consensus       404 ~v~p~~l~~aL~~~a~~-Gv~--i~~~~~V~~i~~~~-~~~~v~t~~g~----~~~ad~VV~A~G~~s~~  465 (662)
T PRK01747        404 WLCPAELCRALLALAGQ-QLT--IHFGHEVARLERED-DGWQLDFAGGT----LASAPVVVLANGHDAAR  465 (662)
T ss_pred             eeCHHHHHHHHHHhccc-CcE--EEeCCEeeEEEEeC-CEEEEEECCCc----EEECCEEEECCCCCccc
Confidence            34556777777777777 777  88999999998766 77887765442    56799999999986643

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=98.81  E-value=5.1e-08  Score=96.24  Aligned_cols=62  Identities=29%  Similarity=0.282  Sum_probs=48.6

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCCC
Q 013303           99 YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVP  168 (446)
Q Consensus        99 ~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~p  168 (446)
                      +.....+.+.+.+.++..|+.  +.++++|+++...+ +.+.|.+.++     ++.+|.||+|+|.++..
T Consensus       141 ~i~p~~~~~~l~~~~~~~g~~--~~~~~~V~~i~~~~-~~~~v~~~~~-----~i~a~~vV~aaG~~~~~  202 (380)
T TIGR01377       141 VLYAEKALRALQELAEAHGAT--VRDGTKVVEIEPTE-LLVTVKTTKG-----SYQANKLVVTAGAWTSK  202 (380)
T ss_pred             EEcHHHHHHHHHHHHHHcCCE--EECCCeEEEEEecC-CeEEEEeCCC-----EEEeCEEEEecCcchHH
Confidence            345678888888888888887  88999999998765 6677765432     68999999999976543

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.80  E-value=8.2e-08  Score=95.35  Aligned_cols=104  Identities=23%  Similarity=0.291  Sum_probs=84.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      +++++|||||+.|+..|..+++.|.+|+|+|+.+++-                                           
T Consensus       173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL-------------------------------------------  209 (454)
T COG1249         173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL-------------------------------------------  209 (454)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-------------------------------------------
Confidence            5789999999999999999999999999999987540                                           


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                        |.               -.+++.+.+.+..++.++.  ++++++|+.++..+ +.-.++++++.+.  ++++|.|++|
T Consensus       210 --p~---------------~D~ei~~~~~~~l~~~gv~--i~~~~~v~~~~~~~-~~v~v~~~~g~~~--~~~ad~vLvA  267 (454)
T COG1249         210 --PG---------------EDPEISKELTKQLEKGGVK--ILLNTKVTAVEKKD-DGVLVTLEDGEGG--TIEADAVLVA  267 (454)
T ss_pred             --Cc---------------CCHHHHHHHHHHHHhCCeE--EEccceEEEEEecC-CeEEEEEecCCCC--EEEeeEEEEc
Confidence              10               0168899999998887777  99999999998876 3366666665422  6889999999


Q ss_pred             cCCCCCCccCC
Q 013303          162 NGHFSVPRLAQ  172 (446)
Q Consensus       162 tG~~s~p~~p~  172 (446)
                      +|  -+|+...
T Consensus       268 iG--R~Pn~~~  276 (454)
T COG1249         268 IG--RKPNTDG  276 (454)
T ss_pred             cC--CccCCCC
Confidence            99  7888764

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.80  E-value=1e-07  Score=96.57  Aligned_cols=136  Identities=18%  Similarity=0.201  Sum_probs=93.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||++|+.+|..|++.|.+|+++|+.+.+..                                          
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------  207 (461)
T TIGR01350       170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP------------------------------------------  207 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC------------------------------------------
Confidence            36899999999999999999999999999999764310                                          


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                         .               ...++.+.+.+..++.+++  ++++++|.+++..+ +...+...++  ...++.+|.||+|
T Consensus       208 ---~---------------~~~~~~~~~~~~l~~~gi~--i~~~~~v~~i~~~~-~~v~v~~~~g--~~~~i~~D~vi~a  264 (461)
T TIGR01350       208 ---G---------------EDAEVSKVVAKALKKKGVK--ILTNTKVTAVEKND-DQVVYENKGG--ETETLTGEKVLVA  264 (461)
T ss_pred             ---C---------------CCHHHHHHHHHHHHHcCCE--EEeCCEEEEEEEeC-CEEEEEEeCC--cEEEEEeCEEEEe
Confidence               0               0145667777888888888  99999999998765 5555554433  2347899999999


Q ss_pred             cCCCCCCccCC--CCC--CCC-CCccEEEeeecCCCCCCCCCEEEEEecCCc
Q 013303          162 NGHFSVPRLAQ--VPG--IDS-WPGKQMHSHNYRIPNPFQDQVVILIGHYAS  208 (446)
Q Consensus       162 tG~~s~p~~p~--i~G--~~~-~~g~~~hs~~~~~~~~~~~k~VvVVG~G~s  208 (446)
                      +|  ..|+...  +..  +.. -.|.+.....++.    ..++|-++|....
T Consensus       265 ~G--~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t----~~~~IyaiGD~~~  310 (461)
T TIGR01350       265 VG--RKPNTEGLGLENLGVELDERGRIVVDEYMRT----NVPGIYAIGDVIG  310 (461)
T ss_pred             cC--CcccCCCCCcHhhCceECCCCcEeeCCCccc----CCCCEEEeeecCC
Confidence            99  7777652  222  111 1233332222222    2367889997643

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.78  E-value=1.9e-07  Score=94.62  Aligned_cols=105  Identities=16%  Similarity=0.215  Sum_probs=81.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+...                                         
T Consensus       172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-----------------------------------------  210 (462)
T PRK06416        172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG-----------------------------------------  210 (462)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc-----------------------------------------
Confidence            468999999999999999999999999999997643100                                         


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                         ...++.+.+.+..++.++.  ++++++|.+|+..+ +...+...++ ++..++.+|.||+|
T Consensus       211 -------------------~~~~~~~~l~~~l~~~gV~--i~~~~~V~~i~~~~-~~v~v~~~~g-g~~~~i~~D~vi~a  267 (462)
T PRK06416        211 -------------------EDKEISKLAERALKKRGIK--IKTGAKAKKVEQTD-DGVTVTLEDG-GKEETLEADYVLVA  267 (462)
T ss_pred             -------------------CCHHHHHHHHHHHHHcCCE--EEeCCEEEEEEEeC-CEEEEEEEeC-CeeEEEEeCEEEEe
Confidence                               0146677788888888888  99999999998765 4566665543 23357899999999


Q ss_pred             cCCCCCCccCC
Q 013303          162 NGHFSVPRLAQ  172 (446)
Q Consensus       162 tG~~s~p~~p~  172 (446)
                      +|  ..|+...
T Consensus       268 ~G--~~p~~~~  276 (462)
T PRK06416        268 VG--RRPNTEN  276 (462)
T ss_pred             eC--CccCCCC
Confidence            99  7777653

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=98.78  E-value=5e-08  Score=95.55  Aligned_cols=151  Identities=17%  Similarity=0.217  Sum_probs=85.5

Q ss_pred             eEEEECcChHHHHHHHHHHHC--CCcEEEEeeCCCcCc--eeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcc
Q 013303            4 HVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGG--SWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG   79 (446)
Q Consensus         4 ~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG--~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~   79 (446)
                      ||+|||||+||+++|..|++.  |++|+++|+.+.+||  +|.+..... .+....+ ...+-...|+......+.....
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~-~~~~~~~-~~~~v~~~W~~~~v~~~~~~~~   78 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDL-SDAQHAW-LADLVQTDWPGYEVRFPKYRRK   78 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceeccccc-chhhhhh-hhhhheEeCCCCEEECcchhhh
Confidence            799999999999999999987  999999999988876  455432110 0000000 0000112233222222111000


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEE
Q 013303           80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV  159 (446)
Q Consensus        80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VV  159 (446)
                      +             .......++.++.+++.+.+   +..  +.++++|.+++.   +.  |++.++.    ++.+|.||
T Consensus        79 l-------------~~~Y~~I~r~~f~~~l~~~l---~~~--i~~~~~V~~v~~---~~--v~l~dg~----~~~A~~VI  131 (370)
T TIGR01789        79 L-------------KTAYRSMTSTRFHEGLLQAF---PEG--VILGRKAVGLDA---DG--VDLAPGT----RINARSVI  131 (370)
T ss_pred             c-------------CCCceEEEHHHHHHHHHHhh---ccc--EEecCEEEEEeC---CE--EEECCCC----EEEeeEEE
Confidence            0             01223345677777775433   333  777999998842   33  4444443    79999999


Q ss_pred             EccCCCCCCccCCCCCCCCCCccEEE
Q 013303          160 VCNGHFSVPRLAQVPGIDSWPGKQMH  185 (446)
Q Consensus       160 vAtG~~s~p~~p~i~G~~~~~g~~~h  185 (446)
                      .|.|..+.  .+...|...|.|..+.
T Consensus       132 ~A~G~~s~--~~~~~~~Q~f~G~~~r  155 (370)
T TIGR01789       132 DCRGFKPS--AHLKGGFQVFLGREMR  155 (370)
T ss_pred             ECCCCCCC--ccccceeeEEEEEEEE
Confidence            99996532  2222455555554433

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=98.77  E-value=7.4e-08  Score=97.47  Aligned_cols=67  Identities=18%  Similarity=0.241  Sum_probs=50.9

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCC-CceEEEEEcEEEEccCCCCCC
Q 013303          100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVVCNGHFSVP  168 (446)
Q Consensus       100 ~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~-~~~~~~~~d~VVvAtG~~s~p  168 (446)
                      .....+...+.+.+++.|+.  ++++++|++++..+++.|.+++.+.. ++..++.+|+||+|+|.++..
T Consensus       175 Vdp~~l~~aL~~~a~~~Gv~--i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~  242 (483)
T TIGR01320       175 VDFGALTKQLLGYLVQNGTT--IRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALP  242 (483)
T ss_pred             ECHHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHH
Confidence            35577888888888888887  99999999998865356888765422 223468999999999987643

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK07121 hypothetical protein; Validated

Probab=98.77  E-value=3.2e-08  Score=101.04  Aligned_cols=64  Identities=20%  Similarity=0.286  Sum_probs=47.3

Q ss_pred             CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCc-eEEEEEeCCCceEEEEE-cEEEEccCCCCC
Q 013303          101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRKKDDVVEEETF-DAVVVCNGHFSV  167 (446)
Q Consensus       101 ~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~~~~~~~~~~~-d~VVvAtG~~s~  167 (446)
                      .+..+.+.|.+.+++.++.  +.++++|+++..+++++ .-|.... .++...+.+ +.||+|||.++.
T Consensus       175 ~g~~~~~~L~~~~~~~gv~--i~~~~~v~~l~~~~~g~v~Gv~~~~-~~~~~~i~a~k~VVlAtGg~~~  240 (492)
T PRK07121        175 GGAMLMDPLAKRAAALGVQ--IRYDTRATRLIVDDDGRVVGVEARR-YGETVAIRARKGVVLAAGGFAM  240 (492)
T ss_pred             chHHHHHHHHHHHHhCCCE--EEeCCEEEEEEECCCCCEEEEEEEe-CCcEEEEEeCCEEEECCCCcCc
Confidence            4677888899999998887  99999999998764333 2344433 233457888 999999997653

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=98.75  E-value=3.5e-08  Score=102.02  Aligned_cols=156  Identities=21%  Similarity=0.291  Sum_probs=81.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCC-c-C-ceee----eCCCCC--CCCCCCCCCCCCccCCcc-----C
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ-V-G-GSWI----YTSETE--SDPLGVDPNRYPVHSSLY-----K   67 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~-~-G-G~w~----~~~~~~--~~~~g~~p~~~~~~~~~y-----~   67 (446)
                      +.+|+|||||++||++|..|++.|++|+|||+.+. . + |.+.    ..++.-  .+..|+.....+......     .
T Consensus        81 ~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~i~  160 (668)
T PLN02927         81 KSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDRIN  160 (668)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCcccceee
Confidence            46899999999999999999999999999999641 1 1 1110    000000  000110000000000000     0


Q ss_pred             ceeecCCCC-CcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC
Q 013303           68 SLRVNLPRE-LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK  146 (446)
Q Consensus        68 ~l~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~  146 (446)
                      .+....... ...+..+.....   .+.......++.++.+.|.+.   .+.. .++++++|++++..+ +.++|++.++
T Consensus       161 ~~~d~~~G~~~~~~~~~~~~~~---~g~p~~~~I~R~~L~~~L~~a---lg~~-~i~~g~~V~~I~~~~-d~VtV~~~dG  232 (668)
T PLN02927        161 GLVDGISGSWYVKFDTFTPAAS---RGLPVTRVISRMTLQQILARA---VGED-VIRNESNVVDFEDSG-DKVTVVLENG  232 (668)
T ss_pred             eeeecCCCceEeeccccccccc---cCCCeEEEEeHHHHHHHHHhh---CCCC-EEEcCCEEEEEEEeC-CEEEEEECCC
Confidence            000000000 011111110000   000011234677777777442   3332 378899999998765 6677777665


Q ss_pred             CCceEEEEEcEEEEccCCCCCCc
Q 013303          147 DDVVEEETFDAVVVCNGHFSVPR  169 (446)
Q Consensus       147 ~~~~~~~~~d~VVvAtG~~s~p~  169 (446)
                      .    ++.+|.||.|.|.+|.-+
T Consensus       233 ~----ti~aDlVVGADG~~S~vR  251 (668)
T PLN02927        233 Q----RYEGDLLVGADGIWSKVR  251 (668)
T ss_pred             C----EEEcCEEEECCCCCcHHH
Confidence            3    689999999999877544

>TIGR02053 MerA mercuric reductase

Probab=98.73  E-value=4.2e-07  Score=92.17  Aligned_cols=105  Identities=20%  Similarity=0.268  Sum_probs=80.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+...                                         
T Consensus       166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-----------------------------------------  204 (463)
T TIGR02053       166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR-----------------------------------------  204 (463)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc-----------------------------------------
Confidence            368999999999999999999999999999997543100                                         


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                         ...++...+.+..++.+++  ++++++|..++..+ +...+++.... ...++.+|.||+|
T Consensus       205 -------------------~d~~~~~~l~~~l~~~gV~--i~~~~~V~~i~~~~-~~~~v~~~~~~-~~~~i~~D~ViiA  261 (463)
T TIGR02053       205 -------------------EEPEISAAVEEALAEEGIE--VVTSAQVKAVSVRG-GGKIITVEKPG-GQGEVEADELLVA  261 (463)
T ss_pred             -------------------cCHHHHHHHHHHHHHcCCE--EEcCcEEEEEEEcC-CEEEEEEEeCC-CceEEEeCEEEEe
Confidence                               0145667788888888888  99999999998754 45566654321 2247899999999


Q ss_pred             cCCCCCCccCC
Q 013303          162 NGHFSVPRLAQ  172 (446)
Q Consensus       162 tG~~s~p~~p~  172 (446)
                      +|  ..|+...
T Consensus       262 ~G--~~p~~~~  270 (463)
T TIGR02053       262 TG--RRPNTDG  270 (463)
T ss_pred             EC--CCcCCCC
Confidence            99  7777654

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.73  E-value=2e-07  Score=94.70  Aligned_cols=106  Identities=24%  Similarity=0.282  Sum_probs=81.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+..                                          
T Consensus       183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------  220 (475)
T PRK06327        183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA------------------------------------------  220 (475)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC------------------------------------------
Confidence            47899999999999999999999999999998753310                                          


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                      .  ...++.+.+.+..++.|+.  ++.+++|++++..+ +...+...+++++..++.+|.|++|
T Consensus       221 ----------------~--~d~~~~~~~~~~l~~~gi~--i~~~~~v~~i~~~~-~~v~v~~~~~~g~~~~i~~D~vl~a  279 (475)
T PRK06327        221 ----------------A--ADEQVAKEAAKAFTKQGLD--IHLGVKIGEIKTGG-KGVSVAYTDADGEAQTLEVDKLIVS  279 (475)
T ss_pred             ----------------c--CCHHHHHHHHHHHHHcCcE--EEeCcEEEEEEEcC-CEEEEEEEeCCCceeEEEcCEEEEc
Confidence                            0  0145667777777778888  99999999998765 4455665554444457999999999


Q ss_pred             cCCCCCCccCC
Q 013303          162 NGHFSVPRLAQ  172 (446)
Q Consensus       162 tG~~s~p~~p~  172 (446)
                      +|  ..|+.+.
T Consensus       280 ~G--~~p~~~~  288 (475)
T PRK06327        280 IG--RVPNTDG  288 (475)
T ss_pred             cC--CccCCCC
Confidence            99  7887653

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.73  E-value=2.7e-07  Score=93.38  Aligned_cols=103  Identities=18%  Similarity=0.231  Sum_probs=78.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||++|+.+|..|.+.|.+|+++++.+.+...                                         
T Consensus       170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~-----------------------------------------  208 (458)
T PRK06912        170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG-----------------------------------------  208 (458)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc-----------------------------------------
Confidence            368999999999999999999999999999987533100                                         


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                         ...++.+.+.+..++.|++  ++++++|.+++... ....+  .. +++..++.+|.||+|
T Consensus       209 -------------------~d~e~~~~l~~~L~~~GI~--i~~~~~V~~i~~~~-~~v~~--~~-~g~~~~i~~D~vivA  263 (458)
T PRK06912        209 -------------------EDEDIAHILREKLENDGVK--IFTGAALKGLNSYK-KQALF--EY-EGSIQEVNAEFVLVS  263 (458)
T ss_pred             -------------------ccHHHHHHHHHHHHHCCCE--EEECCEEEEEEEcC-CEEEE--EE-CCceEEEEeCEEEEe
Confidence                               0146777888888888988  99999999998654 33333  22 222346899999999


Q ss_pred             cCCCCCCccCC
Q 013303          162 NGHFSVPRLAQ  172 (446)
Q Consensus       162 tG~~s~p~~p~  172 (446)
                      +|  ..|+...
T Consensus       264 ~G--~~p~~~~  272 (458)
T PRK06912        264 VG--RKPRVQQ  272 (458)
T ss_pred             cC--CccCCCC
Confidence            99  7777653

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=98.72  E-value=1.9e-07  Score=94.04  Aligned_cols=66  Identities=17%  Similarity=0.273  Sum_probs=46.2

Q ss_pred             CCHHHHHHHHHHHHHH-hCCCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEEEEccCCCCC
Q 013303          100 PGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       100 ~~~~~v~~yl~~~~~~-~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      .....+.+.+.+.+.+ .|+.  ++++++|+.+++.+++.|++.+.+. .++..++.+|+||+|+|.++.
T Consensus       181 VD~~~L~~aL~~~l~~~~Gv~--i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~  248 (497)
T PRK13339        181 VNFGALTRKLAKHLESHPNAQ--VKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAI  248 (497)
T ss_pred             cCHHHHHHHHHHHHHhCCCcE--EEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchH
Confidence            3445666666666643 3666  8999999999887447899875432 222235899999999998774

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.72  E-value=2.3e-07  Score=94.07  Aligned_cols=105  Identities=25%  Similarity=0.254  Sum_probs=80.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++|+.+.+..                                          
T Consensus       172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~------------------------------------------  209 (466)
T PRK07818        172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALP------------------------------------------  209 (466)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCC------------------------------------------
Confidence            46899999999999999999999999999998653310                                          


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                      .+  ..++.+.+.+..++.|++  ++++++|++++... +...+.+...++...++.+|.||+|
T Consensus       210 ----------------~~--d~~~~~~l~~~l~~~gV~--i~~~~~v~~i~~~~-~~~~v~~~~~~g~~~~i~~D~vi~a  268 (466)
T PRK07818        210 ----------------NE--DAEVSKEIAKQYKKLGVK--ILTGTKVESIDDNG-SKVTVTVSKKDGKAQELEADKVLQA  268 (466)
T ss_pred             ----------------cc--CHHHHHHHHHHHHHCCCE--EEECCEEEEEEEeC-CeEEEEEEecCCCeEEEEeCEEEEC
Confidence                            00  145677788888888998  99999999998654 4455655422333357999999999


Q ss_pred             cCCCCCCccC
Q 013303          162 NGHFSVPRLA  171 (446)
Q Consensus       162 tG~~s~p~~p  171 (446)
                      +|  ..|+..
T Consensus       269 ~G--~~pn~~  276 (466)
T PRK07818        269 IG--FAPRVE  276 (466)
T ss_pred             cC--cccCCC
Confidence            99  677764

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.71  E-value=1.1e-07  Score=94.29  Aligned_cols=100  Identities=23%  Similarity=0.249  Sum_probs=78.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++|+.+.+.+..                                        
T Consensus       144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~----------------------------------------  183 (396)
T PRK09754        144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN----------------------------------------  183 (396)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhh----------------------------------------
Confidence            3689999999999999999999999999999876442110                                        


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                         ...++.+++.+..++.|+.  ++++++|++++. + +...+++.++.    ++.+|.||+|
T Consensus       184 -------------------~~~~~~~~l~~~l~~~GV~--i~~~~~V~~i~~-~-~~~~v~l~~g~----~i~aD~Vv~a  236 (396)
T PRK09754        184 -------------------APPPVQRYLLQRHQQAGVR--ILLNNAIEHVVD-G-EKVELTLQSGE----TLQADVVIYG  236 (396)
T ss_pred             -------------------cCHHHHHHHHHHHHHCCCE--EEeCCeeEEEEc-C-CEEEEEECCCC----EEECCEEEEC
Confidence                               0145667788888888988  999999999975 2 44556655543    6899999999


Q ss_pred             cCCCCCCcc
Q 013303          162 NGHFSVPRL  170 (446)
Q Consensus       162 tG~~s~p~~  170 (446)
                      +|  ..|+.
T Consensus       237 ~G--~~pn~  243 (396)
T PRK09754        237 IG--ISAND  243 (396)
T ss_pred             CC--CChhh
Confidence            99  66664

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.71  E-value=1.6e-07  Score=94.53  Aligned_cols=100  Identities=19%  Similarity=0.279  Sum_probs=77.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||++|+.+|..|++.|.+|+++++.+.+...                                         
T Consensus       157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-----------------------------------------  195 (438)
T PRK07251        157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR-----------------------------------------  195 (438)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC-----------------------------------------
Confidence            468999999999999999999999999999997643100                                         


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                         ...++.+.+.+..++.|+.  ++++++|++++..+ +...++. ++    .++.+|.||+|
T Consensus       196 -------------------~~~~~~~~~~~~l~~~GI~--i~~~~~V~~i~~~~-~~v~v~~-~g----~~i~~D~viva  248 (438)
T PRK07251        196 -------------------EEPSVAALAKQYMEEDGIT--FLLNAHTTEVKNDG-DQVLVVT-ED----ETYRFDALLYA  248 (438)
T ss_pred             -------------------CCHHHHHHHHHHHHHcCCE--EEcCCEEEEEEecC-CEEEEEE-CC----eEEEcCEEEEe
Confidence                               0145667778888888988  89999999998654 4444432 22    26899999999


Q ss_pred             cCCCCCCccC
Q 013303          162 NGHFSVPRLA  171 (446)
Q Consensus       162 tG~~s~p~~p  171 (446)
                      +|  ..|+..
T Consensus       249 ~G--~~p~~~  256 (438)
T PRK07251        249 TG--RKPNTE  256 (438)
T ss_pred             eC--CCCCcc
Confidence            99  777764

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.71  E-value=1.4e-07  Score=94.33  Aligned_cols=64  Identities=25%  Similarity=0.343  Sum_probs=46.8

Q ss_pred             CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCce-EEEEEe-CCCceEEEEEcEEEEccCCCCC
Q 013303          101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW-KVKSRK-KDDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       101 ~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~-~v~~~~-~~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      .+..+.+.+.+.+++.+++  |+++++|+++..++ ++- -|...+ .++....+.++.||+|||.+..
T Consensus       139 ~g~~~~~~l~~~~~~~gv~--i~~~~~~~~Li~e~-g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~  204 (417)
T PF00890_consen  139 GGKALIEALAKAAEEAGVD--IRFNTRVTDLITED-GRVTGVVAENPADGEFVRIKAKAVILATGGFGG  204 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTEE--EEESEEEEEEEEET-TEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred             cHHHHHHHHHHHHhhcCee--eeccceeeeEEEeC-CceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence            5788999999999999977  99999999998875 432 244442 3456678999999999997765

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK08401 L-aspartate oxidase; Provisional

Probab=98.71  E-value=9.6e-08  Score=96.64  Aligned_cols=158  Identities=21%  Similarity=0.305  Sum_probs=81.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCC-----CCCCCC------CCCCCCccCCccCcee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETE-----SDPLGV------DPNRYPVHSSLYKSLR   70 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~-----~~~~g~------~p~~~~~~~~~y~~l~   70 (446)
                      ++||+|||||.|||+||..+++.|.+|+|+|+....|.++.......     .|..-.      ..+...........+.
T Consensus         1 ~~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~   80 (466)
T PRK08401          1 MMKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVI   80 (466)
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            48999999999999999999999999999999754322211110000     000000      0000000000000111


Q ss_pred             ecCCCC--CcccCCCCCCcCCCCCCCCC-C----CCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceE-EE
Q 013303           71 VNLPRE--LMGFQAYPFVARNYEGSVDL-R----RYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VK  142 (446)
Q Consensus        71 ~~~~~~--~~~~~d~~~~~~~~~~~~~~-~----~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~-v~  142 (446)
                      .+.+..  .+.--..+|.......+... +    .-.++..+.+.|.+.+++.++.  +..+ .|+.+...+ +.+. |.
T Consensus        81 ~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~--i~~~-~v~~l~~~~-g~v~Gv~  156 (466)
T PRK08401         81 SKSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVN--FIRG-FAEELAIKN-GKAYGVF  156 (466)
T ss_pred             HHHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCE--EEEe-EeEEEEeeC-CEEEEEE
Confidence            111110  00001122221100000000 0    0124578889999999988887  6554 777776543 4443 33


Q ss_pred             EEeCCCceEEEEEcEEEEccCCCCCC
Q 013303          143 SRKKDDVVEEETFDAVVVCNGHFSVP  168 (446)
Q Consensus       143 ~~~~~~~~~~~~~d~VVvAtG~~s~p  168 (446)
                      . ++    ..+.++.||+|||.++..
T Consensus       157 ~-~g----~~i~a~~VVLATGG~~~~  177 (466)
T PRK08401        157 L-DG----ELLKFDATVIATGGFSGL  177 (466)
T ss_pred             E-CC----EEEEeCeEEECCCcCcCC
Confidence            3 22    268999999999986653

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=98.70  E-value=4.8e-08  Score=89.90  Aligned_cols=167  Identities=21%  Similarity=0.222  Sum_probs=98.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcC-----------------------------ceeeeCCCCCCCCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG-----------------------------GSWIYTSETESDPL   52 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G-----------------------------G~w~~~~~~~~~~~   52 (446)
                      ..+|+|||||.-|+++|.+|+++|.+++++|+-+-+-                             -.|...+......+
T Consensus         7 ~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g~~~   86 (399)
T KOG2820|consen    7 SRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESGVKL   86 (399)
T ss_pred             ceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhceee
Confidence            4689999999999999999999999999999865331                             11221111100000


Q ss_pred             CCCCCCCCccCCc----cCceeecCCCCC------------cccC-CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 013303           53 GVDPNRYPVHSSL----YKSLRVNLPREL------------MGFQ-AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE  115 (446)
Q Consensus        53 g~~p~~~~~~~~~----y~~l~~~~~~~~------------~~~~-d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~  115 (446)
                      +|.... +.....    ..++..|..+..            -.|+ .++++............+....+-+..+++++++
T Consensus        87 ~~~t~~-~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~~~  165 (399)
T KOG2820|consen   87 HCGTGL-LISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDKARE  165 (399)
T ss_pred             ccccee-eecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHHHHH
Confidence            110000 000000    011111111110            0122 3333332111122344566778889999999999


Q ss_pred             hCCCCcEEeCeEEEEEEEcCC--CceEEEEEeCCCceEEEEEcEEEEccCCCCCCccCCCCC
Q 013303          116 FGVDQVVRLHTEVLNARLVES--NKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPG  175 (446)
Q Consensus       116 ~~l~~~i~~~~~V~~v~~~~~--~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~p~~p~i~G  175 (446)
                      .|..  ++.+..|..+...+.  ....|.+.++.    .+.++++|+++|+|....+|.--+
T Consensus       166 ~G~i--~~dg~~v~~~~~~~e~~~~v~V~Tt~gs----~Y~akkiI~t~GaWi~klL~~~~~  221 (399)
T KOG2820|consen  166 LGVI--FRDGEKVKFIKFVDEEGNHVSVQTTDGS----IYHAKKIIFTVGAWINKLLPTSLA  221 (399)
T ss_pred             cCeE--EecCcceeeEeeccCCCceeEEEeccCC----eeecceEEEEecHHHHhhcCcccc
Confidence            9998  999999999885543  23445555553    689999999999987777775333

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.70  E-value=4.7e-08  Score=102.11  Aligned_cols=38  Identities=37%  Similarity=0.307  Sum_probs=34.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG   39 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG   39 (446)
                      ..||+|||||.|||+||..+++.|.+|+|+|+....||
T Consensus         8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g   45 (626)
T PRK07803          8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKA   45 (626)
T ss_pred             eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence            46999999999999999999999999999999875543

>PRK06116 glutathione reductase; Validated

Probab=98.70  E-value=2.2e-07  Score=93.91  Aligned_cols=103  Identities=15%  Similarity=0.151  Sum_probs=80.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+..                                          
T Consensus       167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------  204 (450)
T PRK06116        167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLR------------------------------------------  204 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcc------------------------------------------
Confidence            46899999999999999999999999999998653210                                          


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                      .  ...++.+.+.+..++.|++  ++++++|.+++..+++.+.+.+.++.    ++.+|.||+|
T Consensus       205 ----------------~--~~~~~~~~l~~~L~~~GV~--i~~~~~V~~i~~~~~g~~~v~~~~g~----~i~~D~Vv~a  260 (450)
T PRK06116        205 ----------------G--FDPDIRETLVEEMEKKGIR--LHTNAVPKAVEKNADGSLTLTLEDGE----TLTVDCLIWA  260 (450)
T ss_pred             ----------------c--cCHHHHHHHHHHHHHCCcE--EECCCEEEEEEEcCCceEEEEEcCCc----EEEeCEEEEe
Confidence                            0  0146677788888888988  99999999998765343666655442    6899999999


Q ss_pred             cCCCCCCccCC
Q 013303          162 NGHFSVPRLAQ  172 (446)
Q Consensus       162 tG~~s~p~~p~  172 (446)
                      +|  ..|+...
T Consensus       261 ~G--~~p~~~~  269 (450)
T PRK06116        261 IG--REPNTDG  269 (450)
T ss_pred             eC--CCcCCCC
Confidence            99  7777653

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=98.68  E-value=2.7e-07  Score=95.16  Aligned_cols=64  Identities=17%  Similarity=0.068  Sum_probs=46.5

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCc-eEEEEEeC-CCceEEEEEcEEEEccCCCC
Q 013303          100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRKK-DDVVEEETFDAVVVCNGHFS  166 (446)
Q Consensus       100 ~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~~-~~~~~~~~~d~VVvAtG~~s  166 (446)
                      .....+...+...+.+.|..  +.++++|+++...+ +. +.|.+.+. .++..++.++.||+|+|.|+
T Consensus       146 vdp~rl~~al~~~A~~~Ga~--i~~~t~V~~i~~~~-~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa  211 (546)
T PRK11101        146 VDPFRLTAANMLDAKEHGAQ--ILTYHEVTGLIREG-DTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG  211 (546)
T ss_pred             ECHHHHHHHHHHHHHhCCCE--EEeccEEEEEEEcC-CeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence            34456666666778888988  99999999998765 44 34665543 23345799999999999865

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.67  E-value=2.7e-07  Score=93.55  Aligned_cols=101  Identities=19%  Similarity=0.204  Sum_probs=79.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+...                                         
T Consensus       175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-----------------------------------------  213 (461)
T PRK05249        175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF-----------------------------------------  213 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc-----------------------------------------
Confidence            478999999999999999999999999999997643110                                         


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                         -..++.+.+.+..++.++.  +.++++|++++..+ +.+.+++.++.    ++.+|.||+|
T Consensus       214 -------------------~d~~~~~~l~~~l~~~gI~--v~~~~~v~~i~~~~-~~~~v~~~~g~----~i~~D~vi~a  267 (461)
T PRK05249        214 -------------------LDDEISDALSYHLRDSGVT--IRHNEEVEKVEGGD-DGVIVHLKSGK----KIKADCLLYA  267 (461)
T ss_pred             -------------------CCHHHHHHHHHHHHHcCCE--EEECCEEEEEEEeC-CeEEEEECCCC----EEEeCEEEEe
Confidence                               0146677788888888888  89999999998765 55666654432    6899999999


Q ss_pred             cCCCCCCccC
Q 013303          162 NGHFSVPRLA  171 (446)
Q Consensus       162 tG~~s~p~~p  171 (446)
                      +|  ..|+..
T Consensus       268 ~G--~~p~~~  275 (461)
T PRK05249        268 NG--RTGNTD  275 (461)
T ss_pred             ec--CCcccc
Confidence            99  677654

>TIGR00551 nadB L-aspartate oxidase

Probab=98.67  E-value=1.2e-07  Score=96.56  Aligned_cols=161  Identities=22%  Similarity=0.179  Sum_probs=85.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCC--CCC----------CCCCccCCccCce
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLG--VDP----------NRYPVHSSLYKSL   69 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g--~~p----------~~~~~~~~~y~~l   69 (446)
                      ..||+|||||.|||+||..+++.|. |+|+||.+..||.-......-....+  -.|          +..+........+
T Consensus         2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~   80 (488)
T TIGR00551         2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV   80 (488)
T ss_pred             CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence            4799999999999999999999997 99999987655432221100000000  000          0000000000011


Q ss_pred             eecCCCCC--cccCCCCCCcCCC-------CCC-CCCCC----CCCHHHHHHHHHHHHHH-hCCCCcEEeCeEEEEEEEc
Q 013303           70 RVNLPREL--MGFQAYPFVARNY-------EGS-VDLRR----YPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLV  134 (446)
Q Consensus        70 ~~~~~~~~--~~~~d~~~~~~~~-------~~~-~~~~~----~~~~~~v~~yl~~~~~~-~~l~~~i~~~~~V~~v~~~  134 (446)
                      ..+.+..+  +.--..+|.....       ..+ ...+.    -.++..+.+.|.+.+++ .++.  +.+++.|+.+...
T Consensus        81 ~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~--i~~~~~v~~l~~~  158 (488)
T TIGR00551        81 VSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIR--IIEGENALDLLIE  158 (488)
T ss_pred             HHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcE--EEECeEeeeeecc
Confidence            11111000  0000112211000       000 00010    12457888888888887 5777  9999999999765


Q ss_pred             CCCceE-EEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303          135 ESNKWK-VKSRKKDDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       135 ~~~~~~-v~~~~~~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      + +... |...+. +....+.++.||+|||.++.
T Consensus       159 ~-g~v~Gv~~~~~-~~~~~i~A~~VVlAtGG~~~  190 (488)
T TIGR00551       159 T-GRVVGVWVWNR-ETVETCHADAVVLATGGAGK  190 (488)
T ss_pred             C-CEEEEEEEEEC-CcEEEEEcCEEEECCCcccC
Confidence            4 4333 444443 33357899999999998664

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=98.67  E-value=1.9e-07  Score=94.38  Aligned_cols=64  Identities=23%  Similarity=0.266  Sum_probs=48.8

Q ss_pred             CCHHHHHHHHHHHHHH----hCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCCC
Q 013303          100 PGHEEVLRYLQNFARE----FGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVP  168 (446)
Q Consensus       100 ~~~~~v~~yl~~~~~~----~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~p  168 (446)
                      .....+...+.+.+++    .|..-.|+++++|++|++.+++.|.|++.++     ++.+|+||+|+|.|+.+
T Consensus       208 Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-----~i~A~~VVvaAG~~S~~  275 (497)
T PTZ00383        208 VDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-----EIRARFVVVSACGYSLL  275 (497)
T ss_pred             ECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-----EEEeCEEEECcChhHHH
Confidence            4556777777778877    6633238999999999987546788877543     68999999999987643

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.66  E-value=7.2e-08  Score=99.47  Aligned_cols=65  Identities=8%  Similarity=0.004  Sum_probs=46.6

Q ss_pred             CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCC-ceEEEEEe-CCCceEEEEEcEEEEccCCCCC
Q 013303          101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN-KWKVKSRK-KDDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       101 ~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~-~~~v~~~~-~~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      ++.++.+.|.+.+.+.++.  +.+++.|+++..++++ ..-+...+ ..+....+.++.||+|||.+..
T Consensus       132 ~G~~i~~~L~~~~~~~gv~--i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~  198 (543)
T PRK06263        132 TGHEMMMGLMEYLIKERIK--ILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAGQ  198 (543)
T ss_pred             CHHHHHHHHHHHHhcCCCE--EEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCC
Confidence            3578888888888888887  9999999998765422 12233333 3344567899999999997653

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.65  E-value=3.1e-07  Score=93.40  Aligned_cols=150  Identities=16%  Similarity=0.125  Sum_probs=78.3

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCc-cCCccCceee-cCCCCCccc
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPV-HSSLYKSLRV-NLPRELMGF   80 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~-~~~~y~~l~~-~~~~~~~~~   80 (446)
                      +||+|||||+||+.+|..+++.|.+|+|+|+....+|.+...+..+....|.     +. .-....+... ........|
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~-----l~rEidaLGG~~~~~~d~~~i~~   75 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGI-----LVKEIDALGGLMGKAADKAGLQF   75 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccch-----hhhhhhcccchHHHHHHhhceeh
Confidence            5899999999999999999999999999998754333321111111000000     00 0000000000 000000001


Q ss_pred             CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCC-ceEEEEEeCCCceEEEEEcEE
Q 013303           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESN-KWKVKSRKKDDVVEEETFDAV  158 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~-~~~v~~~~~~~~~~~~~~d~V  158 (446)
                      ..+.-...  +.......-..+..+...+.+.+++. ++.  + +...|+.+...+++ ...|.+.++.    .+.++.|
T Consensus        76 r~ln~skg--pAV~~~RaQVDr~~y~~~L~e~Le~~pgV~--I-le~~Vv~li~e~~g~V~GV~t~~G~----~I~Ad~V  146 (617)
T TIGR00136        76 RVLNSSKG--PAVRATRAQIDKVLYRKAMRNALENQPNLS--L-FQGEVEDLILEDNDEIKGVVTQDGL----KFRAKAV  146 (617)
T ss_pred             eecccCCC--CcccccHHhCCHHHHHHHHHHHHHcCCCcE--E-EEeEEEEEEEecCCcEEEEEECCCC----EEECCEE
Confidence            11100000  00000112345677888888888877 444  3 45678777654213 3445555543    7999999


Q ss_pred             EEccCCCC
Q 013303          159 VVCNGHFS  166 (446)
Q Consensus       159 VvAtG~~s  166 (446)
                      |+|||.|.
T Consensus       147 ILATGtfL  154 (617)
T TIGR00136       147 IITTGTFL  154 (617)
T ss_pred             EEccCccc
Confidence            99999654

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK06370 mercuric reductase; Validated

Probab=98.65  E-value=4.8e-07  Score=91.74  Aligned_cols=104  Identities=26%  Similarity=0.331  Sum_probs=80.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+...                                         
T Consensus       171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-----------------------------------------  209 (463)
T PRK06370        171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR-----------------------------------------  209 (463)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc-----------------------------------------
Confidence            478999999999999999999999999999997643110                                         


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                         ...++.+.+.+..++.|++  ++++++|.+++..+ +...+.+.... ...++.+|.||+|
T Consensus       210 -------------------~~~~~~~~l~~~l~~~GV~--i~~~~~V~~i~~~~-~~~~v~~~~~~-~~~~i~~D~Vi~A  266 (463)
T PRK06370        210 -------------------EDEDVAAAVREILEREGID--VRLNAECIRVERDG-DGIAVGLDCNG-GAPEITGSHILVA  266 (463)
T ss_pred             -------------------cCHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcC-CEEEEEEEeCC-CceEEEeCEEEEC
Confidence                               0145667788888888988  99999999998765 44555554321 1246899999999


Q ss_pred             cCCCCCCccC
Q 013303          162 NGHFSVPRLA  171 (446)
Q Consensus       162 tG~~s~p~~p  171 (446)
                      +|  ..|+..
T Consensus       267 ~G--~~pn~~  274 (463)
T PRK06370        267 VG--RVPNTD  274 (463)
T ss_pred             cC--CCcCCC
Confidence            99  777765

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.65  E-value=4.1e-07  Score=92.25  Aligned_cols=105  Identities=26%  Similarity=0.324  Sum_probs=78.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++|+.+.+...                                         
T Consensus       174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~-----------------------------------------  212 (471)
T PRK06467        174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA-----------------------------------------  212 (471)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc-----------------------------------------
Confidence            368999999999999999999999999999997643110                                         


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                       +  ..++.+++.+..++. +.  +.++++|+.++..+ +...++..++.+...++.+|.||+|
T Consensus       213 -----------------~--d~~~~~~~~~~l~~~-v~--i~~~~~v~~i~~~~-~~~~v~~~~~~~~~~~i~~D~vi~a  269 (471)
T PRK06467        213 -----------------A--DKDIVKVFTKRIKKQ-FN--IMLETKVTAVEAKE-DGIYVTMEGKKAPAEPQRYDAVLVA  269 (471)
T ss_pred             -----------------C--CHHHHHHHHHHHhhc-eE--EEcCCEEEEEEEcC-CEEEEEEEeCCCcceEEEeCEEEEe
Confidence                             0  145666666666555 55  88899999998655 4566665554333357999999999


Q ss_pred             cCCCCCCccCC
Q 013303          162 NGHFSVPRLAQ  172 (446)
Q Consensus       162 tG~~s~p~~p~  172 (446)
                      +|  ..|+...
T Consensus       270 ~G--~~pn~~~  278 (471)
T PRK06467        270 VG--RVPNGKL  278 (471)
T ss_pred             ec--ccccCCc
Confidence            99  7777653

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.64  E-value=3.3e-07  Score=91.51  Aligned_cols=58  Identities=22%  Similarity=0.189  Sum_probs=45.5

Q ss_pred             HHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCC-CceEEEEEcEEEEccCCCCC
Q 013303          107 RYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       107 ~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~-~~~~~~~~d~VVvAtG~~s~  167 (446)
                      --+..-+.+.|..  +...++|+.+.+++ +-|-|.+.+.. ++..++.++.||.|||.|+.
T Consensus       168 ~~~a~~A~~~Ga~--il~~~~v~~~~re~-~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d  226 (532)
T COG0578         168 AANARDAAEHGAE--ILTYTRVESLRREG-GVWGVEVEDRETGETYEIRARAVVNAAGPWVD  226 (532)
T ss_pred             HHHHHHHHhcccc--hhhcceeeeeeecC-CEEEEEEEecCCCcEEEEEcCEEEECCCccHH
Confidence            3344445666776  78889999999987 57889988865 57789999999999997653

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.64  E-value=2.1e-07  Score=96.32  Aligned_cols=162  Identities=19%  Similarity=0.080  Sum_probs=86.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCC----CCCCCCC------------CccCCc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPL----GVDPNRY------------PVHSSL   65 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~----g~~p~~~------------~~~~~~   65 (446)
                      ..||+|||||.|||+||..+++.|.+|+|+||....||........-....    +..-+..            +.....
T Consensus         5 ~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~~   84 (566)
T PRK06452          5 EYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQDA   84 (566)
T ss_pred             cCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCHHH
Confidence            469999999999999999999999999999998665543221110000000    0000000            000000


Q ss_pred             cCceeecCCCC--CcccCCCCCCcCCC-------CCCC-CCC-CC---CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEE
Q 013303           66 YKSLRVNLPRE--LMGFQAYPFVARNY-------EGSV-DLR-RY---PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNA  131 (446)
Q Consensus        66 y~~l~~~~~~~--~~~~~d~~~~~~~~-------~~~~-~~~-~~---~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v  131 (446)
                      .+.+..+.+..  .+.--..+|.....       ..+. ..+ .+   .++..+.+.|.+.+.+.++.  +.+++.++++
T Consensus        85 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~--i~~~~~~~~L  162 (566)
T PRK06452         85 AELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNVD--FYNEWFSLDL  162 (566)
T ss_pred             HHHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCCE--EEeCcEEEEE
Confidence            01111111110  00001122221100       0000 000 01   14667888888878777877  8999999998


Q ss_pred             EEcCCCceE-EEEEeC-CCceEEEEEcEEEEccCCCC
Q 013303          132 RLVESNKWK-VKSRKK-DDVVEEETFDAVVVCNGHFS  166 (446)
Q Consensus       132 ~~~~~~~~~-v~~~~~-~~~~~~~~~d~VVvAtG~~s  166 (446)
                      ..++ +... |...+. +++...+.++.||+|||.+.
T Consensus       163 i~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  198 (566)
T PRK06452        163 VTDN-KKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG  198 (566)
T ss_pred             EEEC-CEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence            8654 5433 334332 33456788999999999765

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=98.63  E-value=3.8e-07  Score=92.46  Aligned_cols=66  Identities=17%  Similarity=0.286  Sum_probs=49.7

Q ss_pred             CHHHHHHHHHHHHHHhC-CCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEEEEccCCCCCC
Q 013303          101 GHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFSVP  168 (446)
Q Consensus       101 ~~~~v~~yl~~~~~~~~-l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~VVvAtG~~s~p  168 (446)
                      ....+.+.|.+.+++.+ +.  ++++++|++++..+++.|.|++.+. .+...++.+++||+|+|.++.+
T Consensus       181 d~~~l~~aL~~~a~~~Ggv~--i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~  248 (494)
T PRK05257        181 NFGALTRQLVGYLQKQGNFE--LQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALP  248 (494)
T ss_pred             CHHHHHHHHHHHHHhCCCeE--EEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHH
Confidence            44577888888888876 66  9999999999986645698887642 2222368999999999987644

>PRK07804 L-aspartate oxidase; Provisional

Probab=98.63  E-value=1.5e-07  Score=96.94  Aligned_cols=164  Identities=24%  Similarity=0.217  Sum_probs=86.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCC--CCC----------CCCccCCccCce
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGV--DPN----------RYPVHSSLYKSL   69 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~--~p~----------~~~~~~~~y~~l   69 (446)
                      ..||+|||+|.|||+||..+++.|.+|+|+||....||.-......-....+.  .|.          ..+........+
T Consensus        16 ~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~~   95 (541)
T PRK07804         16 AADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRSL   95 (541)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            47999999999999999999999999999999887654322211000000000  000          000000000111


Q ss_pred             eecCCCCC--cccCCCCCCcCCC-------CCC-CCCC-CC----CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEc
Q 013303           70 RVNLPREL--MGFQAYPFVARNY-------EGS-VDLR-RY----PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV  134 (446)
Q Consensus        70 ~~~~~~~~--~~~~d~~~~~~~~-------~~~-~~~~-~~----~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~  134 (446)
                      ..+.+..+  +.--..+|.....       ..+ ...+ .+    .++.++.+.|.+.+++.++.  +..++.|+++...
T Consensus        96 ~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~--i~~~~~v~~Li~~  173 (541)
T PRK07804         96 VAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLD--IREHALALDLLTD  173 (541)
T ss_pred             HHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCE--EEECeEeeeeEEc
Confidence            11111100  0000122211000       000 0000 01    25678899999999888877  8899999999765


Q ss_pred             CCCc-eEEEEEe----CCCceEEEEEcEEEEccCCCCC
Q 013303          135 ESNK-WKVKSRK----KDDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       135 ~~~~-~~v~~~~----~~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      +++. .-+...+    ..+....+.++.||+|||.++.
T Consensus       174 ~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~  211 (541)
T PRK07804        174 GTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQ  211 (541)
T ss_pred             CCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCC
Confidence            4222 1233321    1122357889999999997664

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.63  E-value=5.9e-07  Score=90.99  Aligned_cols=105  Identities=26%  Similarity=0.286  Sum_probs=80.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++|+.+.+..                                          
T Consensus       174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~------------------------------------------  211 (466)
T PRK06115        174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP------------------------------------------  211 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC------------------------------------------
Confidence            47899999999999999999999999999998654310                                          


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVV  160 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~VVv  160 (446)
                                      .+  ..++.+.+.+..++.+++  ++++++|.+++..+ +...+.+... +++..++.+|.||+
T Consensus       212 ----------------~~--d~~~~~~l~~~l~~~gV~--i~~~~~V~~i~~~~-~~v~v~~~~~~~g~~~~i~~D~vi~  270 (466)
T PRK06115        212 ----------------GT--DTETAKTLQKALTKQGMK--FKLGSKVTGATAGA-DGVSLTLEPAAGGAAETLQADYVLV  270 (466)
T ss_pred             ----------------CC--CHHHHHHHHHHHHhcCCE--EEECcEEEEEEEcC-CeEEEEEEEcCCCceeEEEeCEEEE
Confidence                            00  145667777888888888  99999999998754 4556655432 12345799999999


Q ss_pred             ccCCCCCCccC
Q 013303          161 CNGHFSVPRLA  171 (446)
Q Consensus       161 AtG~~s~p~~p  171 (446)
                      |+|  ..|+..
T Consensus       271 a~G--~~pn~~  279 (466)
T PRK06115        271 AIG--RRPYTQ  279 (466)
T ss_pred             ccC--Cccccc
Confidence            999  677654

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.63  E-value=4.4e-07  Score=91.49  Aligned_cols=101  Identities=16%  Similarity=0.240  Sum_probs=78.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+..                                          
T Consensus       166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~------------------------------------------  203 (446)
T TIGR01424       166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILR------------------------------------------  203 (446)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCc------------------------------------------
Confidence            46899999999999999999999999999998653300                                          


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                      .+  ..++.+.+.+..++.|+.  ++++++|.+++..+ +...+++.++.    ++.+|.||+|
T Consensus       204 ----------------~~--d~~~~~~l~~~l~~~gV~--i~~~~~v~~i~~~~-~~~~v~~~~g~----~i~~D~viva  258 (446)
T TIGR01424       204 ----------------GF--DDDMRALLARNMEGRGIR--IHPQTSLTSITKTD-DGLKVTLSHGE----EIVADVVLFA  258 (446)
T ss_pred             ----------------cc--CHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcC-CeEEEEEcCCc----EeecCEEEEe
Confidence                            00  146677788888888888  99999999998755 44666654432    6899999999


Q ss_pred             cCCCCCCccC
Q 013303          162 NGHFSVPRLA  171 (446)
Q Consensus       162 tG~~s~p~~p  171 (446)
                      +|  ..|+..
T Consensus       259 ~G--~~pn~~  266 (446)
T TIGR01424       259 TG--RSPNTK  266 (446)
T ss_pred             eC--CCcCCC
Confidence            99  677654

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=98.62  E-value=2.9e-07  Score=93.13  Aligned_cols=63  Identities=19%  Similarity=0.192  Sum_probs=48.4

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCCCcc
Q 013303           99 YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRL  170 (446)
Q Consensus        99 ~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~p~~  170 (446)
                      ..+...+..-|.+.+++.|+.  |..++.|+.++. . +.|.|++.++     ++.+|.||+|||.|+....
T Consensus       179 ~i~P~~l~~~L~~~a~~~Gv~--i~~~t~V~~i~~-~-~~~~v~t~~g-----~v~A~~VV~Atga~s~~l~  241 (460)
T TIGR03329       179 SVQPGLLVRGLRRVALELGVE--IHENTPMTGLEE-G-QPAVVRTPDG-----QVTADKVVLALNAWMASHF  241 (460)
T ss_pred             EECHHHHHHHHHHHHHHcCCE--EECCCeEEEEee-C-CceEEEeCCc-----EEECCEEEEcccccccccC
Confidence            345677888888888889988  999999999975 2 4577766443     5899999999998765433

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=98.62  E-value=3.8e-07  Score=91.23  Aligned_cols=61  Identities=25%  Similarity=0.257  Sum_probs=45.8

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceE-EEEEeCCCceEEEEEcEEEEccCCCCCC
Q 013303          100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSRKKDDVVEEETFDAVVVCNGHFSVP  168 (446)
Q Consensus       100 ~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~-v~~~~~~~~~~~~~~d~VVvAtG~~s~p  168 (446)
                      .....+...|.+.+++.|+.  |+++++|++++..+ +.+. |++..+     ++.+|.||+|+|.++..
T Consensus       198 ~~p~~~~~~l~~~~~~~G~~--i~~~~~V~~i~~~~-~~~~~v~t~~~-----~~~a~~VV~a~G~~~~~  259 (416)
T PRK00711        198 GDCQLFTQRLAAMAEQLGVK--FRFNTPVDGLLVEG-GRITGVQTGGG-----VITADAYVVALGSYSTA  259 (416)
T ss_pred             CCHHHHHHHHHHHHHHCCCE--EEcCCEEEEEEecC-CEEEEEEeCCc-----EEeCCEEEECCCcchHH
Confidence            34567778888888888887  89999999998765 4443 444321     68899999999987643

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=98.61  E-value=1.6e-07  Score=97.56  Aligned_cols=64  Identities=17%  Similarity=0.118  Sum_probs=45.7

Q ss_pred             CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceE-EEEEe-CCCceEEEEEcEEEEccCCCCC
Q 013303          101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSRK-KDDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       101 ~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~-v~~~~-~~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      .+..+...|.+.+.+.++.  +.+++.|+.+...+ +... |...+ ..+....+.++.||+|||.++.
T Consensus       127 ~G~~i~~~L~~~~~~~gv~--i~~~~~v~~L~~~~-g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~  192 (566)
T TIGR01812       127 TGHALLHTLYEQCLKLGVS--FFNEYFALDLIHDD-GRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGR  192 (566)
T ss_pred             CHHHHHHHHHHHHHHcCCE--EEeccEEEEEEEeC-CEEEEEEEEECCCCcEEEEECCeEEECCCcccC
Confidence            4567788888888888887  99999999997654 4432 22222 2334457899999999997664

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.61  E-value=2.6e-07  Score=89.30  Aligned_cols=128  Identities=21%  Similarity=0.303  Sum_probs=72.1

Q ss_pred             eEEEECcChHHHHHHHHHHHCCCcEEEE-eeCCCcCceeeeCCCCCCCCCCCCCCCCC------------ccCCc-----
Q 013303            4 HVAVIGAGAAGLVVGHELLREGHTVVVY-EKGEQVGGSWIYTSETESDPLGVDPNRYP------------VHSSL-----   65 (446)
Q Consensus         4 ~V~IIGaG~aGl~aA~~l~~~g~~v~v~-e~~~~~GG~w~~~~~~~~~~~g~~p~~~~------------~~~~~-----   65 (446)
                      ||+|||||.||+.||..+++.|.+|+++ .+.+.+|..            +|+|+..-            +.+.+     
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~------------~Cnpsigg~~kg~L~~Eidalgg~m~~~aD   68 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEM------------SCNPSIGGIAKGHLVREIDALGGLMGRAAD   68 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--------------SSSSEEESTTHHHHHHHHHHTT-SHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccc------------cchhhhccccccchhHHHhhhhhHHHHHHh
Confidence            8999999999999999999999999999 444444432            22222100            00000     


Q ss_pred             cCcee---ecCCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCceEE
Q 013303           66 YKSLR---VNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKV  141 (446)
Q Consensus        66 y~~l~---~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~v  141 (446)
                      ...++   .|..+.       |-.       ...+.-..+..+.+++++.++.. ++.  + +.++|+.+..+++..+-|
T Consensus        69 ~~~i~~~~lN~skG-------pav-------~a~r~qvDr~~y~~~~~~~l~~~~nl~--i-~~~~V~~l~~e~~~v~GV  131 (392)
T PF01134_consen   69 ETGIHFRMLNRSKG-------PAV-------HALRAQVDRDKYSRAMREKLESHPNLT--I-IQGEVTDLIVENGKVKGV  131 (392)
T ss_dssp             HHEEEEEEESTTS--------GGC-------TEEEEEE-HHHHHHHHHHHHHTSTTEE--E-EES-EEEEEECTTEEEEE
T ss_pred             HhhhhhhcccccCC-------CCc-------cchHhhccHHHHHHHHHHHHhcCCCeE--E-EEcccceEEecCCeEEEE
Confidence            00000   011000       000       00122356788999999988874 454  4 578999998765223445


Q ss_pred             EEEeCCCceEEEEEcEEEEccCC
Q 013303          142 KSRKKDDVVEEETFDAVVVCNGH  164 (446)
Q Consensus       142 ~~~~~~~~~~~~~~d~VVvAtG~  164 (446)
                      .+.++    ..+.+|.||+|||.
T Consensus       132 ~~~~g----~~~~a~~vVlaTGt  150 (392)
T PF01134_consen  132 VTKDG----EEIEADAVVLATGT  150 (392)
T ss_dssp             EETTS----EEEEECEEEE-TTT
T ss_pred             EeCCC----CEEecCEEEEeccc
Confidence            55443    37999999999994

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.59  E-value=5.6e-07  Score=90.72  Aligned_cols=103  Identities=15%  Similarity=0.180  Sum_probs=79.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+...                                         
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~-----------------------------------------  204 (450)
T TIGR01421       166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS-----------------------------------------  204 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc-----------------------------------------
Confidence            468999999999999999999999999999987643110                                         


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                       +  ..++.+.+.+..++.|+.  ++++++|++++...++...+++.++   ..++.+|.||+|
T Consensus       205 -----------------~--d~~~~~~~~~~l~~~gI~--i~~~~~v~~i~~~~~~~~~v~~~~g---~~~i~~D~vi~a  260 (450)
T TIGR01421       205 -----------------F--DSMISETITEEYEKEGIN--VHKLSKPVKVEKTVEGKLVIHFEDG---KSIDDVDELIWA  260 (450)
T ss_pred             -----------------c--CHHHHHHHHHHHHHcCCE--EEcCCEEEEEEEeCCceEEEEECCC---cEEEEcCEEEEe
Confidence                             0  145677788888888988  9999999999865423345555433   136899999999


Q ss_pred             cCCCCCCccC
Q 013303          162 NGHFSVPRLA  171 (446)
Q Consensus       162 tG~~s~p~~p  171 (446)
                      +|  ..|+..
T Consensus       261 ~G--~~pn~~  268 (450)
T TIGR01421       261 IG--RKPNTK  268 (450)
T ss_pred             eC--CCcCcc
Confidence            99  777765

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK07846 mycothione reductase; Reviewed

Probab=98.59  E-value=1.1e-06  Score=88.46  Aligned_cols=130  Identities=18%  Similarity=0.231  Sum_probs=86.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+..   .                                      
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~---~--------------------------------------  204 (451)
T PRK07846        166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR---H--------------------------------------  204 (451)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc---c--------------------------------------
Confidence            47899999999999999999999999999999764310   0                                      


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                         ...++.+.+.+.. +.++.  ++++++|++++..+ +...+++.++    .++.+|.||+|
T Consensus       205 -------------------~d~~~~~~l~~l~-~~~v~--i~~~~~v~~i~~~~-~~v~v~~~~g----~~i~~D~vl~a  257 (451)
T PRK07846        205 -------------------LDDDISERFTELA-SKRWD--VRLGRNVVGVSQDG-SGVTLRLDDG----STVEADVLLVA  257 (451)
T ss_pred             -------------------cCHHHHHHHHHHH-hcCeE--EEeCCEEEEEEEcC-CEEEEEECCC----cEeecCEEEEE
Confidence                               0134555665544 34666  88999999998654 4455555433    27899999999


Q ss_pred             cCCCCCCccCCCC----CCCC-CCccEEEeeecCCCCCCCCCEEEEEec
Q 013303          162 NGHFSVPRLAQVP----GIDS-WPGKQMHSHNYRIPNPFQDQVVILIGH  205 (446)
Q Consensus       162 tG~~s~p~~p~i~----G~~~-~~g~~~hs~~~~~~~~~~~k~VvVVG~  205 (446)
                      +|  ..|+.+.+.    |++. -.|.+.....++.    ....|-.+|-
T Consensus       258 ~G--~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~T----s~p~IyA~GD  300 (451)
T PRK07846        258 TG--RVPNGDLLDAAAAGVDVDEDGRVVVDEYQRT----SAEGVFALGD  300 (451)
T ss_pred             EC--CccCccccCchhcCceECCCCcEeECCCccc----CCCCEEEEee
Confidence            99  777765432    2211 1244444333332    2356777774

>PRK06175 L-aspartate oxidase; Provisional

Probab=98.59  E-value=1.5e-07  Score=94.31  Aligned_cols=38  Identities=24%  Similarity=0.442  Sum_probs=33.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCce
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS   40 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~   40 (446)
                      ..||+|||+|.|||+||..+. .|.+|+|+||.+..||.
T Consensus         4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~   41 (433)
T PRK06175          4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECN   41 (433)
T ss_pred             cccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCc
Confidence            369999999999999999984 79999999998877654

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.59  E-value=4.6e-07  Score=88.95  Aligned_cols=34  Identities=29%  Similarity=0.489  Sum_probs=31.7

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~   36 (446)
                      +||+|||||++|+++|.+|++.|.+|+|+|+...
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~   34 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR   34 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            5899999999999999999999999999999753

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=98.59  E-value=4.1e-08  Score=105.01  Aligned_cols=135  Identities=23%  Similarity=0.273  Sum_probs=77.2

Q ss_pred             CeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCCCc---CceeeeCCCCCCCCCC-CCCC--CCCcc-CCccCceeecC
Q 013303            3 RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQV---GGSWIYTSETESDPLG-VDPN--RYPVH-SSLYKSLRVNL   73 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~---GG~w~~~~~~~~~~~g-~~p~--~~~~~-~~~y~~l~~~~   73 (446)
                      ++|+|||||||||++|..|++.  |++|+|+|+.+..   |.-....+..- ..+. ..+.  ..+.. ...|..+....
T Consensus         1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l-~~L~~~~~~~~~~~~~~~~~~~~~~~~~   79 (765)
T PRK08255          1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATL-GNLRAADPVSAAAIGDAFNHWDDIDVHF   79 (765)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHH-HHHHhcCHHHHHHHHHhcccCCceEEEE
Confidence            4899999999999999999998  8999999998753   32222111100 0000 0000  00000 00011111100


Q ss_pred             CCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEE
Q 013303           74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE  153 (446)
Q Consensus        74 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~  153 (446)
                             .+......    +. .-.-.++.++.+.|.+.+.+.++.  ++++++|+.+...                 ..
T Consensus        80 -------~g~~~~~~----g~-~~~~i~R~~L~~~L~e~a~~~GV~--i~~g~~v~~i~~~-----------------~~  128 (765)
T PRK08255         80 -------KGRRIRSG----GH-GFAGIGRKRLLNILQARCEELGVK--LVFETEVPDDQAL-----------------AA  128 (765)
T ss_pred             -------CCEEEEEC----Ce-eEecCCHHHHHHHHHHHHHHcCCE--EEeCCccCchhhh-----------------hc
Confidence                   00000000    00 011257899999999999999987  9999988765310                 24


Q ss_pred             EEcEEEEccCCCCCCc
Q 013303          154 TFDAVVVCNGHFSVPR  169 (446)
Q Consensus       154 ~~d~VVvAtG~~s~p~  169 (446)
                      .+|.||.|+|.+|..+
T Consensus       129 ~~D~VVgADG~~S~vR  144 (765)
T PRK08255        129 DADLVIASDGLNSRIR  144 (765)
T ss_pred             CCCEEEEcCCCCHHHH
Confidence            6899999999877543

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.59  E-value=2.1e-07  Score=96.99  Aligned_cols=67  Identities=12%  Similarity=0.153  Sum_probs=47.8

Q ss_pred             CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceE-EEEEe-CCCceEEEEEcEEEEccCCCCCCc
Q 013303          101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSRK-KDDVVEEETFDAVVVCNGHFSVPR  169 (446)
Q Consensus       101 ~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~-v~~~~-~~~~~~~~~~d~VVvAtG~~s~p~  169 (446)
                      ++..+...|.+.+.+.++.  +..++.++++-.++++... |...+ .++....+.++.||+|||.+....
T Consensus       164 tG~~i~~~L~~~a~~~gv~--i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~  232 (617)
T PTZ00139        164 TGHAMLHTLYGQSLKYDCN--FFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGRAY  232 (617)
T ss_pred             cHHHHHHHHHHHHHhCCCE--EEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCcccc
Confidence            4678899999989888887  8999999997763324322 32222 234556789999999999766543

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.58  E-value=3e-07  Score=95.58  Aligned_cols=66  Identities=9%  Similarity=-0.066  Sum_probs=46.5

Q ss_pred             CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCc-eEEEEEe-CCCceEEEEEcEEEEccCCCCCC
Q 013303          101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRK-KDDVVEEETFDAVVVCNGHFSVP  168 (446)
Q Consensus       101 ~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~-~~~~~~~~~~d~VVvAtG~~s~p  168 (446)
                      ++..+...|.+.+.+.++.  +..++.++.+...+++. .-|...+ .++....+.++.||+|||.++..
T Consensus       146 tG~~l~~~L~~~~~~~gi~--i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~  213 (591)
T PRK07057        146 TGHALLHTLYQQNVAAKTQ--FFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGRI  213 (591)
T ss_pred             ChHHHHHHHHHHHHhcCCE--EEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcccc
Confidence            4577888888888888887  88999999987653232 2233322 23444578899999999976643

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.58  E-value=1.9e-07  Score=97.64  Aligned_cols=37  Identities=27%  Similarity=0.258  Sum_probs=33.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG   38 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G   38 (446)
                      ..||+|||||.|||+||..+++.|.+|+|+|+...+|
T Consensus        35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~   71 (640)
T PRK07573         35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPR   71 (640)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            3699999999999999999999999999999876654

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=98.58  E-value=4.4e-07  Score=84.97  Aligned_cols=106  Identities=26%  Similarity=0.328  Sum_probs=90.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      +++++|||||..||..+--..+.|-+|+++|-.+++|+...                                       
T Consensus       211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD---------------------------------------  251 (506)
T KOG1335|consen  211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMD---------------------------------------  251 (506)
T ss_pred             cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccC---------------------------------------
Confidence            47899999999999999999999999999999888877622                                       


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCC-CceEEEEEcEEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVV  160 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~-~~~~~~~~d~VVv  160 (446)
                                           .++...++...++.++.  ++++++|..+++..++...|++.+.. ++.+++++|.+.|
T Consensus       252 ---------------------~Eisk~~qr~L~kQgik--F~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLV  308 (506)
T KOG1335|consen  252 ---------------------GEISKAFQRVLQKQGIK--FKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLV  308 (506)
T ss_pred             ---------------------HHHHHHHHHHHHhcCce--eEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEE
Confidence                                 47788888888889998  99999999999988677888887754 4677899999999


Q ss_pred             ccCCCCCCccC
Q 013303          161 CNGHFSVPRLA  171 (446)
Q Consensus       161 AtG~~s~p~~p  171 (446)
                      |+|  .+|..-
T Consensus       309 siG--RrP~t~  317 (506)
T KOG1335|consen  309 SIG--RRPFTE  317 (506)
T ss_pred             Ecc--Cccccc
Confidence            999  666653

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.57  E-value=6.7e-08  Score=97.28  Aligned_cols=43  Identities=40%  Similarity=0.534  Sum_probs=39.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT   44 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~   44 (446)
                      +++|+|||||+|||+||++|.+.|++|+|+|.++++||.....
T Consensus        15 ~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~   57 (501)
T KOG0029|consen   15 KKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTF   57 (501)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEE
Confidence            5799999999999999999999999999999999999976543

>PRK08275 putative oxidoreductase; Provisional

Probab=98.56  E-value=2.7e-07  Score=95.39  Aligned_cols=65  Identities=9%  Similarity=0.008  Sum_probs=46.8

Q ss_pred             CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceE-EEEEe-CCCceEEEEEcEEEEccCCCCC
Q 013303          101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSRK-KDDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       101 ~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~-v~~~~-~~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      ++..+.+.|.+.+++.+++  +.+++.|+.+...+++... +...+ .++....+.++.||+|||.++.
T Consensus       135 ~G~~i~~~L~~~~~~~gv~--i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~  201 (554)
T PRK08275        135 EGHDIKKVLYRQLKRARVL--ITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGR  201 (554)
T ss_pred             ChHHHHHHHHHHHHHCCCE--EEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCccc
Confidence            5678889999989888887  9999999999765324322 22222 2334457889999999997653

>PLN02507 glutathione reductase

Probab=98.56  E-value=8.1e-07  Score=90.56  Aligned_cols=102  Identities=19%  Similarity=0.183  Sum_probs=79.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+..|..|++.|.+|+++++.+.+..                                          
T Consensus       203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~------------------------------------------  240 (499)
T PLN02507        203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLR------------------------------------------  240 (499)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCc------------------------------------------
Confidence            36899999999999999999999999999998653210                                          


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                      .  ...++.+.+.+..++.|++  ++++++|.+++..+ +...+...++    .++.+|.|++|
T Consensus       241 ----------------~--~d~~~~~~l~~~l~~~GI~--i~~~~~V~~i~~~~-~~~~v~~~~g----~~i~~D~vl~a  295 (499)
T PLN02507        241 ----------------G--FDDEMRAVVARNLEGRGIN--LHPRTNLTQLTKTE-GGIKVITDHG----EEFVADVVLFA  295 (499)
T ss_pred             ----------------c--cCHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEeC-CeEEEEECCC----cEEEcCEEEEe
Confidence                            0  0146778888888888988  99999999998654 4555554433    26999999999


Q ss_pred             cCCCCCCccCC
Q 013303          162 NGHFSVPRLAQ  172 (446)
Q Consensus       162 tG~~s~p~~p~  172 (446)
                      +|  ..|+...
T Consensus       296 ~G--~~pn~~~  304 (499)
T PLN02507        296 TG--RAPNTKR  304 (499)
T ss_pred             ec--CCCCCCC
Confidence            99  6777653

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.56  E-value=7.1e-07  Score=92.05  Aligned_cols=42  Identities=29%  Similarity=0.431  Sum_probs=38.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT   44 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~   44 (446)
                      ..||+|||+| +|++||..+++.|.+|+|+||.+.+||.....
T Consensus        16 e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~~   57 (564)
T PRK12845         16 TVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTARS   57 (564)
T ss_pred             eeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccCc
Confidence            4799999999 89999999999999999999999999977665

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=98.56  E-value=4e-07  Score=94.89  Aligned_cols=161  Identities=13%  Similarity=0.057  Sum_probs=83.0

Q ss_pred             CeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCCCcCceeeeCCCC--CCCCCCCCCCCC------------CccCCcc
Q 013303            3 RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSET--ESDPLGVDPNRY------------PVHSSLY   66 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG~w~~~~~~--~~~~~g~~p~~~------------~~~~~~y   66 (446)
                      .||+|||||.|||+||..+++.  |.+|+|+||....++.. .....  .....+..-+..            +......
T Consensus        12 ~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~-~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~lv   90 (608)
T PRK06854         12 TDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGA-VAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDLV   90 (608)
T ss_pred             eCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcc-cccCccccccccccCCCHHHHHHHHHHhccCCCCHHHH
Confidence            6999999999999999999998  99999999986543221 11000  000000000000            0000000


Q ss_pred             CceeecCCCCC--cccCCCCCCcCCCCC---CCCCCCCCCHHHHHHHHHHHHHHhC-CCCcEEeCeEEEEEEEcCCCceE
Q 013303           67 KSLRVNLPREL--MGFQAYPFVARNYEG---SVDLRRYPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWK  140 (446)
Q Consensus        67 ~~l~~~~~~~~--~~~~d~~~~~~~~~~---~~~~~~~~~~~~v~~yl~~~~~~~~-l~~~i~~~~~V~~v~~~~~~~~~  140 (446)
                      ..+..+.+..+  +.-...+|.......   .........+..+.+.|.+.+++.+ +.  +.+++.|..+...+ +...
T Consensus        91 ~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~--i~~~~~v~~Li~~~-g~v~  167 (608)
T PRK06854         91 YDIARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDN--VLNRVFITDLLVDD-NRIA  167 (608)
T ss_pred             HHHHHhHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCE--EEeCCEEEEEEEeC-CEEE
Confidence            00000011000  000112221110000   0001112356677778877777764 77  99999999987544 4322


Q ss_pred             -EEE-EeCCCceEEEEEcEEEEccCCCCC
Q 013303          141 -VKS-RKKDDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       141 -v~~-~~~~~~~~~~~~d~VVvAtG~~s~  167 (446)
                       |.. ....+....+.++.||+|||.++.
T Consensus       168 Gv~~~~~~~g~~~~i~AkaVILATGG~~~  196 (608)
T PRK06854        168 GAVGFSVRENKFYVFKAKAVIVATGGAAG  196 (608)
T ss_pred             EEEEEEccCCcEEEEECCEEEECCCchhh
Confidence             222 222334457899999999997654

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.55  E-value=2.9e-07  Score=95.82  Aligned_cols=66  Identities=12%  Similarity=0.151  Sum_probs=47.1

Q ss_pred             CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceE-EEEEe-CCCceEEEEEcEEEEccCCCCCC
Q 013303          101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSRK-KDDVVEEETFDAVVVCNGHFSVP  168 (446)
Q Consensus       101 ~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~-v~~~~-~~~~~~~~~~d~VVvAtG~~s~p  168 (446)
                      ++..+...|.+.+.+.++.  +.+++.|+++..++++... |...+ .++....+.++.||+|||.+...
T Consensus       147 tG~~i~~~L~~~~~~~gi~--i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~  214 (598)
T PRK09078        147 TGHAILHTLYQQSLKHNAE--FFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGRA  214 (598)
T ss_pred             CHHHHHHHHHHHHhhcCCE--EEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCccc
Confidence            4577888898888888887  8999999998765423221 23322 23455678899999999976654

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.55  E-value=2.9e-07  Score=95.51  Aligned_cols=164  Identities=14%  Similarity=0.061  Sum_probs=87.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCC--CC------------CCccCCccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDP--NR------------YPVHSSLYK   67 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p--~~------------~~~~~~~y~   67 (446)
                      ..||+|||+|.|||+||..+++.|.+|+|+||....+|........-....+..+  +.            .+.......
T Consensus         7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v~   86 (588)
T PRK08958          7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIE   86 (588)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHHHHH
Confidence            3599999999999999999999999999999986655432211100000000000  00            000000011


Q ss_pred             ceeecCCCCC--cccCCCCCCcCCC------CCCCCCC----------CC---CCHHHHHHHHHHHHHHhCCCCcEEeCe
Q 013303           68 SLRVNLPREL--MGFQAYPFVARNY------EGSVDLR----------RY---PGHEEVLRYLQNFAREFGVDQVVRLHT  126 (446)
Q Consensus        68 ~l~~~~~~~~--~~~~d~~~~~~~~------~~~~~~~----------~~---~~~~~v~~yl~~~~~~~~l~~~i~~~~  126 (446)
                      .+..+.+..+  +.--..||.....      ..+....          .+   .++..+...|.+.+.+.++.  +..++
T Consensus        87 ~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi~--i~~~~  164 (588)
T PRK08958         87 YMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTT--IFSEW  164 (588)
T ss_pred             HHHHHHHHHHHHHHHcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhhcCCE--EEeCc
Confidence            1111111111  0001123321100      0000000          00   14678888888888877876  88999


Q ss_pred             EEEEEEEcCCCceE-EEEEe-CCCceEEEEEcEEEEccCCCCC
Q 013303          127 EVLNARLVESNKWK-VKSRK-KDDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       127 ~V~~v~~~~~~~~~-v~~~~-~~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      .|+.+-.++++.-. +...+ .++....+.++.||+|||.++.
T Consensus       165 ~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~  207 (588)
T PRK08958        165 YALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGR  207 (588)
T ss_pred             EEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCccc
Confidence            99998764323321 22222 2344567889999999997654

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.55  E-value=5.2e-07  Score=93.59  Aligned_cols=41  Identities=29%  Similarity=0.426  Sum_probs=37.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI   42 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~   42 (446)
                      ..||+|||+|.|||+||..+++.|.+|+|+|+....||...
T Consensus        11 ~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~t~   51 (584)
T PRK12835         11 EVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGSTA   51 (584)
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCchHH
Confidence            46999999999999999999999999999999988887543

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.55  E-value=9e-07  Score=89.67  Aligned_cols=102  Identities=17%  Similarity=0.174  Sum_probs=79.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...                                         
T Consensus       177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~-----------------------------------------  215 (466)
T PRK07845        177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG-----------------------------------------  215 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC-----------------------------------------
Confidence            368999999999999999999999999999986543110                                         


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                       +  ..++.+++.+..++.|+.  +.++++|.+++..+ +...+...++    .++.+|.||+|
T Consensus       216 -----------------~--d~~~~~~l~~~L~~~gV~--i~~~~~v~~v~~~~-~~~~v~~~~g----~~l~~D~vl~a  269 (466)
T PRK07845        216 -----------------E--DADAAEVLEEVFARRGMT--VLKRSRAESVERTG-DGVVVTLTDG----RTVEGSHALMA  269 (466)
T ss_pred             -----------------C--CHHHHHHHHHHHHHCCcE--EEcCCEEEEEEEeC-CEEEEEECCC----cEEEecEEEEe
Confidence                             0  145667788888888988  89999999998655 4555655443    26899999999


Q ss_pred             cCCCCCCccCC
Q 013303          162 NGHFSVPRLAQ  172 (446)
Q Consensus       162 tG~~s~p~~p~  172 (446)
                      +|  ..|+...
T Consensus       270 ~G--~~pn~~~  278 (466)
T PRK07845        270 VG--SVPNTAG  278 (466)
T ss_pred             ec--CCcCCCC
Confidence            99  6777653

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.54  E-value=2.5e-06  Score=88.66  Aligned_cols=43  Identities=37%  Similarity=0.482  Sum_probs=38.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT   44 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~   44 (446)
                      ..||+|||+|++|+++|..+++.|.+|+|||+.+.+||.....
T Consensus        12 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~~   54 (581)
T PRK06134         12 ECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTAWS   54 (581)
T ss_pred             ccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCcccccc
Confidence            4799999999999999999999999999999998888865543

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.53  E-value=8.1e-07  Score=89.66  Aligned_cols=100  Identities=23%  Similarity=0.303  Sum_probs=75.9

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d   82 (446)
                      ++|+|||||+.|+.+|..|++.|.+|+++++.+.+..                                           
T Consensus       150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-------------------------------------------  186 (444)
T PRK09564        150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILP-------------------------------------------  186 (444)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCc-------------------------------------------
Confidence            6899999999999999999999999999998653210                                           


Q ss_pred             CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEcc
Q 013303           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN  162 (446)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAt  162 (446)
                                    ..+  .+++.+++.+.+++.|++  ++++++|.+++..+ ..+.+...+ .    ++.+|.||+|+
T Consensus       187 --------------~~~--~~~~~~~l~~~l~~~gI~--v~~~~~v~~i~~~~-~~~~v~~~~-~----~i~~d~vi~a~  242 (444)
T PRK09564        187 --------------DSF--DKEITDVMEEELRENGVE--LHLNEFVKSLIGED-KVEGVVTDK-G----EYEADVVIVAT  242 (444)
T ss_pred             --------------hhc--CHHHHHHHHHHHHHCCCE--EEcCCEEEEEecCC-cEEEEEeCC-C----EEEcCEEEECc
Confidence                          000  157788888889999988  99999999996532 333343322 2    68999999999


Q ss_pred             CCCCCCccC
Q 013303          163 GHFSVPRLA  171 (446)
Q Consensus       163 G~~s~p~~p  171 (446)
                      |  ..|+.+
T Consensus       243 G--~~p~~~  249 (444)
T PRK09564        243 G--VKPNTE  249 (444)
T ss_pred             C--CCcCHH
Confidence            9  666644

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=98.53  E-value=5.8e-07  Score=93.85  Aligned_cols=165  Identities=13%  Similarity=0.134  Sum_probs=87.9

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCC-CCC-------------CCCccCCccCc
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGV-DPN-------------RYPVHSSLYKS   68 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~-~p~-------------~~~~~~~~y~~   68 (446)
                      .||+|||+|.|||+||..+++.|.+|+|+||....||........-....+. .+.             ..+........
T Consensus        51 ~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~lv~~  130 (635)
T PLN00128         51 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQY  130 (635)
T ss_pred             cCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHHHHHH
Confidence            6999999999999999999999999999999876554322110000000000 000             00000000111


Q ss_pred             eeecCCCCCccc--CCCCCCcCCC------CCCCCC-----------CCC---CCHHHHHHHHHHHHHHhCCCCcEEeCe
Q 013303           69 LRVNLPRELMGF--QAYPFVARNY------EGSVDL-----------RRY---PGHEEVLRYLQNFAREFGVDQVVRLHT  126 (446)
Q Consensus        69 l~~~~~~~~~~~--~d~~~~~~~~------~~~~~~-----------~~~---~~~~~v~~yl~~~~~~~~l~~~i~~~~  126 (446)
                      +..+.+..+-.+  -..||.....      ..+...           ..+   .++..+.+.|.+.+.+.++.  +..++
T Consensus       131 l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~--i~~~~  208 (635)
T PLN00128        131 MCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNTQ--FFVEY  208 (635)
T ss_pred             HHHhHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHhCCCE--EEEee
Confidence            111111111000  1123321100      000000           001   24678888888888888877  88899


Q ss_pred             EEEEEEEcCCCceE-EEEEe-CCCceEEEEEcEEEEccCCCCCCc
Q 013303          127 EVLNARLVESNKWK-VKSRK-KDDVVEEETFDAVVVCNGHFSVPR  169 (446)
Q Consensus       127 ~V~~v~~~~~~~~~-v~~~~-~~~~~~~~~~d~VVvAtG~~s~p~  169 (446)
                      .++.+-.++++... +...+ .+++...+.++.||+|||.+....
T Consensus       209 ~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~~  253 (635)
T PLN00128        209 FALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGRAY  253 (635)
T ss_pred             EEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCcccc
Confidence            99997655323322 33323 234556789999999999876543

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=98.52  E-value=7.6e-07  Score=93.02  Aligned_cols=66  Identities=18%  Similarity=0.033  Sum_probs=47.7

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcC-CC-ceEEEEEeC-CCceEEEEEcEEEEccCCCCC
Q 013303          100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE-SN-KWKVKSRKK-DDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       100 ~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~-~~-~~~v~~~~~-~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      .....+...+...+.+.|..  +..+++|+++...+ ++ .+.|++.+. +++..++.+|.||+|+|.++.
T Consensus       229 vdp~rl~~al~~~A~~~Ga~--i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~  297 (627)
T PLN02464        229 MNDSRLNVALACTAALAGAA--VLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCD  297 (627)
T ss_pred             EcHHHHHHHHHHHHHhCCcE--EEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHH
Confidence            35567777777888888987  88899999998763 23 344565543 233447899999999998754

>PRK08071 L-aspartate oxidase; Provisional

Probab=98.52  E-value=3.2e-07  Score=93.79  Aligned_cols=161  Identities=19%  Similarity=0.194  Sum_probs=84.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCC--CCCCC----------CCccCCccCce
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLG--VDPNR----------YPVHSSLYKSL   69 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g--~~p~~----------~~~~~~~y~~l   69 (446)
                      ..||+|||+|.|||+||..+++ |.+|+|+|+....||........-....+  -.|..          ........+.+
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~~   81 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVRYL   81 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHHHH
Confidence            4699999999999999999976 89999999988766543322110000000  00000          00000001111


Q ss_pred             eecCCCCC--cccCCCCCCcCC-------CCCCC-CCC-----CCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEc
Q 013303           70 RVNLPREL--MGFQAYPFVARN-------YEGSV-DLR-----RYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV  134 (446)
Q Consensus        70 ~~~~~~~~--~~~~d~~~~~~~-------~~~~~-~~~-----~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~  134 (446)
                      ..+.+..+  +.--..+|+...       ...+. ..+     .-..+..+.+.|.+.+. .+++  +.+++.|+.+...
T Consensus        82 ~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~-~gV~--i~~~~~v~~Li~~  158 (510)
T PRK08071         82 VEEGPKEIQELIENGMPFDGDETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELV-PHVT--VVEQEMVIDLIIE  158 (510)
T ss_pred             HHHHHHHHHHHHHcCCccccCCCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHh-cCCE--EEECeEhhheeec
Confidence            11111110  000112222100       00000 000     01235678888877765 4776  8889999998755


Q ss_pred             CCCceE-EEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303          135 ESNKWK-VKSRKKDDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       135 ~~~~~~-v~~~~~~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      + +... +...+.+++...+.++.||+|||.++.
T Consensus       159 ~-g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~  191 (510)
T PRK08071        159 N-GRCIGVLTKDSEGKLKRYYADYVVLASGGCGG  191 (510)
T ss_pred             C-CEEEEEEEEECCCcEEEEEcCeEEEecCCCcc
Confidence            4 5433 444444445557889999999997553

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.51  E-value=9.7e-07  Score=85.72  Aligned_cols=129  Identities=22%  Similarity=0.402  Sum_probs=92.1

Q ss_pred             eEEEECcChHHHHHHHHHHHC-------------CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCcee
Q 013303            4 HVAVIGAGAAGLVVGHELLRE-------------GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLR   70 (446)
Q Consensus         4 ~V~IIGaG~aGl~aA~~l~~~-------------g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~   70 (446)
                      +|+|||||+.|...|-+|++.             .++|+|+|+.+.+                                 
T Consensus       157 ti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I---------------------------------  203 (405)
T COG1252         157 TIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI---------------------------------  203 (405)
T ss_pred             EEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh---------------------------------
Confidence            699999999999999998753             1389999997754                                 


Q ss_pred             ecCCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCce
Q 013303           71 VNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV  150 (446)
Q Consensus        71 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~  150 (446)
                                               .+.|  .+++.+|.++..++.|++  +++++.|++|+++.     |++.+++   
T Consensus       204 -------------------------Lp~~--~~~l~~~a~~~L~~~GV~--v~l~~~Vt~v~~~~-----v~~~~g~---  246 (405)
T COG1252         204 -------------------------LPMF--PPKLSKYAERALEKLGVE--VLLGTPVTEVTPDG-----VTLKDGE---  246 (405)
T ss_pred             -------------------------ccCC--CHHHHHHHHHHHHHCCCE--EEcCCceEEECCCc-----EEEccCC---
Confidence                                     0111  157889999999999999  99999999998754     6665554   


Q ss_pred             EEEEEcEEEEccCCCCCCccCCCCCCCCC-CccEEEeeecCCCCCCCCCEEEEEec
Q 013303          151 EEETFDAVVVCNGHFSVPRLAQVPGIDSW-PGKQMHSHNYRIPNPFQDQVVILIGH  205 (446)
Q Consensus       151 ~~~~~d~VVvAtG~~s~p~~p~i~G~~~~-~g~~~hs~~~~~~~~~~~k~VvVVG~  205 (446)
                      ..+.++.+|-|+|....|..-.+-|.+.- .|+++.......+.   ...|-++|-
T Consensus       247 ~~I~~~tvvWaaGv~a~~~~~~l~~~e~dr~Grl~V~~~L~~~~---~~~IFa~GD  299 (405)
T COG1252         247 EEIPADTVVWAAGVRASPLLKDLSGLETDRRGRLVVNPTLQVPG---HPDIFAAGD  299 (405)
T ss_pred             eeEecCEEEEcCCCcCChhhhhcChhhhccCCCEEeCCCcccCC---CCCeEEEec
Confidence            15999999999996555555454334422 36666555444432   245777773

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.51  E-value=1.3e-06  Score=87.98  Aligned_cols=100  Identities=23%  Similarity=0.351  Sum_probs=77.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+..|..|++.|.+|+++++.+.+..                                          
T Consensus       158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------  195 (441)
T PRK08010        158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLP------------------------------------------  195 (441)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCC------------------------------------------
Confidence            36899999999999999999999999999998653200                                          


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                      .+  ..++.+.+.+..++.|+.  ++++++|.+++..+ +..++...++     ++.+|.||+|
T Consensus       196 ----------------~~--~~~~~~~l~~~l~~~gV~--v~~~~~v~~i~~~~-~~v~v~~~~g-----~i~~D~vl~a  249 (441)
T PRK08010        196 ----------------RE--DRDIADNIATILRDQGVD--IILNAHVERISHHE-NQVQVHSEHA-----QLAVDALLIA  249 (441)
T ss_pred             ----------------Cc--CHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcC-CEEEEEEcCC-----eEEeCEEEEe
Confidence                            00  146677788888888988  99999999998754 4455543322     4789999999


Q ss_pred             cCCCCCCccC
Q 013303          162 NGHFSVPRLA  171 (446)
Q Consensus       162 tG~~s~p~~p  171 (446)
                      +|  ..|+..
T Consensus       250 ~G--~~pn~~  257 (441)
T PRK08010        250 SG--RQPATA  257 (441)
T ss_pred             ec--CCcCCC
Confidence            99  677654

>PRK07208 hypothetical protein; Provisional

Probab=98.50  E-value=2.7e-07  Score=94.04  Aligned_cols=42  Identities=43%  Similarity=0.569  Sum_probs=39.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~   43 (446)
                      ++||+|||||++||+||..|++.|++|+|+|+++.+||.+..
T Consensus         4 ~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s   45 (479)
T PRK07208          4 KKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRT   45 (479)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeee
Confidence            579999999999999999999999999999999999998764

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=98.50  E-value=1.4e-06  Score=87.51  Aligned_cols=99  Identities=20%  Similarity=0.325  Sum_probs=75.6

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d   82 (446)
                      ++|+|||||++|+.+|..|++.|.+|+++++.+.+..                                           
T Consensus       138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~-------------------------------------------  174 (427)
T TIGR03385       138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN-------------------------------------------  174 (427)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc-------------------------------------------
Confidence            6899999999999999999999999999998653300                                           


Q ss_pred             CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEcc
Q 013303           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN  162 (446)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAt  162 (446)
                                    +.+  ..++.+++.+..++.|++  +.++++|.+++..+  .. +...++.    ++.||.||+|+
T Consensus       175 --------------~~~--~~~~~~~~~~~l~~~gV~--v~~~~~v~~i~~~~--~~-v~~~~g~----~i~~D~vi~a~  229 (427)
T TIGR03385       175 --------------KLF--DEEMNQIVEEELKKHEIN--LRLNEEVDSIEGEE--RV-KVFTSGG----VYQADMVILAT  229 (427)
T ss_pred             --------------ccc--CHHHHHHHHHHHHHcCCE--EEeCCEEEEEecCC--CE-EEEcCCC----EEEeCEEEECC
Confidence                          000  146677788888888988  89999999997643  22 3444432    68999999999


Q ss_pred             CCCCCCccC
Q 013303          163 GHFSVPRLA  171 (446)
Q Consensus       163 G~~s~p~~p  171 (446)
                      |  ..|+.+
T Consensus       230 G--~~p~~~  236 (427)
T TIGR03385       230 G--IKPNSE  236 (427)
T ss_pred             C--ccCCHH
Confidence            9  666654

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.50  E-value=4e-07  Score=94.54  Aligned_cols=64  Identities=25%  Similarity=0.245  Sum_probs=45.3

Q ss_pred             CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceE-EE-EEeCCCceEEEEEcEEEEccCCCCC
Q 013303          101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VK-SRKKDDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       101 ~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~-v~-~~~~~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      ++..+...|.+.+.+.++.  +.+++.|+++...+ +... +. .....+....+.++.||+|||.++.
T Consensus       133 tG~~i~~~L~~~~~~~gi~--i~~~t~v~~L~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~  198 (575)
T PRK05945        133 TGHAILHELVNNLRRYGVT--IYDEWYVMRLILED-NQAKGVVMYHIADGRLEVVRAKAVMFATGGYGR  198 (575)
T ss_pred             ChHHHHHHHHHHHhhCCCE--EEeCcEEEEEEEEC-CEEEEEEEEEcCCCeEEEEECCEEEECCCCCcC
Confidence            4578888888888888887  89999999987644 4322 22 1212333456899999999997654

>PTZ00367 squalene epoxidase; Provisional

Probab=98.50  E-value=6e-07  Score=92.23  Aligned_cols=34  Identities=26%  Similarity=0.458  Sum_probs=31.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .+||+|||||++|+++|..|++.|++|+|+|+..
T Consensus        33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             CccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            4699999999999999999999999999999964

>TIGR03452 mycothione_red mycothione reductase

Probab=98.49  E-value=1.5e-06  Score=87.67  Aligned_cols=101  Identities=17%  Similarity=0.211  Sum_probs=74.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+...                                         
T Consensus       169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~-----------------------------------------  207 (452)
T TIGR03452       169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH-----------------------------------------  207 (452)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc-----------------------------------------
Confidence            468999999999999999999999999999987543110                                         


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                         ...++.+.+.++.+ .++.  ++++++|.+++..+ +...+++.++.    ++.+|.|++|
T Consensus       208 -------------------~d~~~~~~l~~~~~-~gI~--i~~~~~V~~i~~~~-~~v~v~~~~g~----~i~~D~vl~a  260 (452)
T TIGR03452       208 -------------------LDEDISDRFTEIAK-KKWD--IRLGRNVTAVEQDG-DGVTLTLDDGS----TVTADVLLVA  260 (452)
T ss_pred             -------------------cCHHHHHHHHHHHh-cCCE--EEeCCEEEEEEEcC-CeEEEEEcCCC----EEEcCEEEEe
Confidence                               00345555655443 4666  88999999998755 45566554432    6899999999


Q ss_pred             cCCCCCCccCC
Q 013303          162 NGHFSVPRLAQ  172 (446)
Q Consensus       162 tG~~s~p~~p~  172 (446)
                      +|  ..|+...
T Consensus       261 ~G--~~pn~~~  269 (452)
T TIGR03452       261 TG--RVPNGDL  269 (452)
T ss_pred             ec--cCcCCCC
Confidence            99  7777643

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PTZ00058 glutathione reductase; Provisional

Probab=98.49  E-value=1.7e-06  Score=88.85  Aligned_cols=103  Identities=17%  Similarity=0.350  Sum_probs=77.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+..|..|++.|.+|+++++.+.+..                                          
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~------------------------------------------  274 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLR------------------------------------------  274 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccc------------------------------------------
Confidence            46899999999999999999999999999998754310                                          


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                      .+  .+++.+.+.+..++.|++  +.+++.|.+|+...++...+...++   ..++.+|.|++|
T Consensus       275 ----------------~~--d~~i~~~l~~~L~~~GV~--i~~~~~V~~I~~~~~~~v~v~~~~~---~~~i~aD~VlvA  331 (561)
T PTZ00058        275 ----------------KF--DETIINELENDMKKNNIN--IITHANVEEIEKVKEKNLTIYLSDG---RKYEHFDYVIYC  331 (561)
T ss_pred             ----------------cC--CHHHHHHHHHHHHHCCCE--EEeCCEEEEEEecCCCcEEEEECCC---CEEEECCEEEEC
Confidence                            00  146677788888888988  9999999999865423344443222   136899999999


Q ss_pred             cCCCCCCccC
Q 013303          162 NGHFSVPRLA  171 (446)
Q Consensus       162 tG~~s~p~~p  171 (446)
                      +|  ..|+..
T Consensus       332 ~G--r~Pn~~  339 (561)
T PTZ00058        332 VG--RSPNTE  339 (561)
T ss_pred             cC--CCCCcc
Confidence            99  667654

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.49  E-value=1.4e-06  Score=86.26  Aligned_cols=62  Identities=21%  Similarity=0.143  Sum_probs=44.6

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCCC
Q 013303          100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVP  168 (446)
Q Consensus       100 ~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~p  168 (446)
                      .+...+..-+...+.+.|.. .+..++.|..++... ..|.|.+..+     ++.+|.||+|+|.++..
T Consensus       153 ~~p~~~~~~l~~~~~~~G~~-~~~~~~~~~~~~~~~-~~~~v~t~~g-----~i~a~~vv~a~G~~~~~  214 (387)
T COG0665         153 LDPRLLTRALAAAAEELGVV-IIEGGTPVTSLERDG-RVVGVETDGG-----TIEADKVVLAAGAWAGE  214 (387)
T ss_pred             CCHHHHHHHHHHHHHhcCCe-EEEccceEEEEEecC-cEEEEEeCCc-----cEEeCEEEEcCchHHHH
Confidence            34466777777777777743 156688999888652 4577777665     49999999999986543

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.49  E-value=1.7e-06  Score=89.44  Aligned_cols=42  Identities=38%  Similarity=0.492  Sum_probs=37.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~   43 (446)
                      ..||+|||+|++|++||..+++.|++|+|||+.+.+||....
T Consensus         7 ~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~~   48 (557)
T PRK07843          7 EYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTAR   48 (557)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCccccc
Confidence            469999999999999999999999999999999888775443

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.49  E-value=1.6e-06  Score=88.02  Aligned_cols=102  Identities=17%  Similarity=0.215  Sum_probs=77.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHC---CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLRE---GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM   78 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~---g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~   78 (446)
                      .++|+|||||+.|+.+|..+...   |.+|+|+|+.+.+...                                      
T Consensus       187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~--------------------------------------  228 (486)
T TIGR01423       187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRG--------------------------------------  228 (486)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccc--------------------------------------
Confidence            46899999999999999766543   8999999987644100                                      


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEE
Q 013303           79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV  158 (446)
Q Consensus        79 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~V  158 (446)
                                          +  ..++.+.+.+..++.|+.  +++++.|.++...+++...|.+.++.    ++.+|.|
T Consensus       229 --------------------~--d~~~~~~l~~~L~~~GI~--i~~~~~v~~i~~~~~~~~~v~~~~g~----~i~~D~v  280 (486)
T TIGR01423       229 --------------------F--DSTLRKELTKQLRANGIN--IMTNENPAKVTLNADGSKHVTFESGK----TLDVDVV  280 (486)
T ss_pred             --------------------c--CHHHHHHHHHHHHHcCCE--EEcCCEEEEEEEcCCceEEEEEcCCC----EEEcCEE
Confidence                                0  156778888888888988  99999999998754333455554432    6899999


Q ss_pred             EEccCCCCCCccC
Q 013303          159 VVCNGHFSVPRLA  171 (446)
Q Consensus       159 VvAtG~~s~p~~p  171 (446)
                      |+|+|  ..|+..
T Consensus       281 l~a~G--~~Pn~~  291 (486)
T TIGR01423       281 MMAIG--RVPRTQ  291 (486)
T ss_pred             EEeeC--CCcCcc
Confidence            99999  677754

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK14694 putative mercuric reductase; Provisional

Probab=98.48  E-value=4.9e-06  Score=84.47  Aligned_cols=99  Identities=18%  Similarity=0.253  Sum_probs=75.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.. +   +..                                      
T Consensus       178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~-~---l~~--------------------------------------  215 (468)
T PRK14694        178 PERLLVIGASVVALELAQAFARLGSRVTVLARSR-V---LSQ--------------------------------------  215 (468)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCC-C---CCC--------------------------------------
Confidence            4689999999999999999999999999998632 1   000                                      


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                         ...++.+.+.+..++.|++  ++++++|.+++..+ +...+.+.+ .    ++.+|.||+|
T Consensus       216 -------------------~~~~~~~~l~~~l~~~GI~--v~~~~~v~~i~~~~-~~~~v~~~~-~----~i~~D~vi~a  268 (468)
T PRK14694        216 -------------------EDPAVGEAIEAAFRREGIE--VLKQTQASEVDYNG-REFILETNA-G----TLRAEQLLVA  268 (468)
T ss_pred             -------------------CCHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcC-CEEEEEECC-C----EEEeCEEEEc
Confidence                               0145677788888888988  89999999998654 444444322 1    5899999999


Q ss_pred             cCCCCCCccC
Q 013303          162 NGHFSVPRLA  171 (446)
Q Consensus       162 tG~~s~p~~p  171 (446)
                      +|  ..|+..
T Consensus       269 ~G--~~pn~~  276 (468)
T PRK14694        269 TG--RTPNTE  276 (468)
T ss_pred             cC--CCCCcC
Confidence            99  677765

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=98.48  E-value=1.2e-06  Score=83.01  Aligned_cols=153  Identities=19%  Similarity=0.198  Sum_probs=83.5

Q ss_pred             CeEEEECcChHHHHHHHHHHHC------CCcEEEEeeCCCcCceeeeCCCCCCCC-CCCCCCCCCccCCccC-----cee
Q 013303            3 RHVAVIGAGAAGLVVGHELLRE------GHTVVVYEKGEQVGGSWIYTSETESDP-LGVDPNRYPVHSSLYK-----SLR   70 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~------g~~v~v~e~~~~~GG~w~~~~~~~~~~-~g~~p~~~~~~~~~y~-----~l~   70 (446)
                      .||||||||||||+||..|.+.      .++|.|+|+...+||.-......+.-. --+.|...-...+.+.     .+.
T Consensus        77 ~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~vT~d~~~  156 (621)
T KOG2415|consen   77 VDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTPVTSDKFK  156 (621)
T ss_pred             ccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCccccccccccee
Confidence            6999999999999999998764      478999999999998765421111000 0011111111111111     111


Q ss_pred             ecCCCCCcccCCC-CCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceE-EEEEeCC-
Q 013303           71 VNLPRELMGFQAY-PFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSRKKD-  147 (446)
Q Consensus        71 ~~~~~~~~~~~d~-~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~-v~~~~~~-  147 (446)
                      .-..+..+..+.+ |+..       .....++-.++.+||-+.|+.+|++  |.-+..+..|-.++++... |.+.+-. 
T Consensus       157 fLt~~~~i~vPv~~pm~N-------hGNYvv~L~~~v~wLg~kAEe~GvE--iyPg~aaSevly~edgsVkGiaT~D~GI  227 (621)
T KOG2415|consen  157 FLTGKGRISVPVPSPMDN-------HGNYVVSLGQLVRWLGEKAEELGVE--IYPGFAASEVLYDEDGSVKGIATNDVGI  227 (621)
T ss_pred             eeccCceeecCCCccccc-------CCcEEEEHHHHHHHHHHHHHhhCce--eccccchhheeEcCCCcEeeEeeccccc
Confidence            1111111111111 1211       1233456789999999999999998  6655555555554433221 2222110 


Q ss_pred             ---C-------ceEEEEEcEEEEccCC
Q 013303          148 ---D-------VVEEETFDAVVVCNGH  164 (446)
Q Consensus       148 ---~-------~~~~~~~d~VVvAtG~  164 (446)
                         |       ...++.+..-|.|-|+
T Consensus       228 ~k~G~pKd~FerGme~hak~TifAEGc  254 (621)
T KOG2415|consen  228 SKDGAPKDTFERGMEFHAKVTIFAEGC  254 (621)
T ss_pred             cCCCCccccccccceecceeEEEeccc
Confidence               1       1135677777888775

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.48  E-value=2.2e-06  Score=86.93  Aligned_cols=104  Identities=26%  Similarity=0.349  Sum_probs=76.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+...                                         
T Consensus       169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-----------------------------------------  207 (460)
T PRK06292        169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL-----------------------------------------  207 (460)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-----------------------------------------
Confidence            478999999999999999999999999999987643110                                         


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                         ...++.+.+.+..++. ++  ++++++|.+++..++...+++..+  ++..++.+|.||+|
T Consensus       208 -------------------~d~~~~~~~~~~l~~~-I~--i~~~~~v~~i~~~~~~~v~~~~~~--~~~~~i~~D~vi~a  263 (460)
T PRK06292        208 -------------------EDPEVSKQAQKILSKE-FK--IKLGAKVTSVEKSGDEKVEELEKG--GKTETIEADYVLVA  263 (460)
T ss_pred             -------------------hhHHHHHHHHHHHhhc-cE--EEcCCEEEEEEEcCCceEEEEEcC--CceEEEEeCEEEEc
Confidence                               0145667777777766 76  899999999986541123332222  23357999999999


Q ss_pred             cCCCCCCccCC
Q 013303          162 NGHFSVPRLAQ  172 (446)
Q Consensus       162 tG~~s~p~~p~  172 (446)
                      +|  ..|+.+.
T Consensus       264 ~G--~~p~~~~  272 (460)
T PRK06292        264 TG--RRPNTDG  272 (460)
T ss_pred             cC--CccCCCC
Confidence            99  7787764

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.48  E-value=6.4e-07  Score=92.52  Aligned_cols=43  Identities=28%  Similarity=0.464  Sum_probs=38.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT   44 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~   44 (446)
                      ..||+|||+|.+|+++|..+++.|.+|+|||+....||.....
T Consensus         6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~~~s   48 (557)
T PRK12844          6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGSTAMS   48 (557)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceecee
Confidence            4799999999999999999999999999999988888875443

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.48  E-value=2.1e-06  Score=89.16  Aligned_cols=42  Identities=38%  Similarity=0.491  Sum_probs=37.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~   43 (446)
                      ..||+|||+|++|++||..+++.|.+|+|+||....||.-..
T Consensus         9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~~   50 (574)
T PRK12842          9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTAF   50 (574)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccce
Confidence            469999999999999999999999999999999988876443

>PRK12839 hypothetical protein; Provisional

Probab=98.47  E-value=5.8e-06  Score=85.61  Aligned_cols=43  Identities=33%  Similarity=0.492  Sum_probs=38.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT   44 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~   44 (446)
                      ..||+|||+|.+|+++|..+++.|.+|+|+|+...+||.....
T Consensus         8 ~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~~   50 (572)
T PRK12839          8 TYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAWS   50 (572)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcccccc
Confidence            3689999999999999999999999999999998888876543

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.47  E-value=1.1e-06  Score=88.30  Aligned_cols=96  Identities=17%  Similarity=0.221  Sum_probs=75.3

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d   82 (446)
                      ++|+|||||+.|+.+|..|++.|.+|+++++.+.+....                                         
T Consensus       149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~-----------------------------------------  187 (438)
T PRK13512        149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLM-----------------------------------------  187 (438)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchhc-----------------------------------------
Confidence            689999999999999999999999999999876431100                                         


Q ss_pred             CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEcc
Q 013303           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN  162 (446)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAt  162 (446)
                                         ..++.+.+.+..++.|+.  ++++++|.+++.     ..|++.++.    ++.+|.|++|+
T Consensus       188 -------------------d~~~~~~l~~~l~~~gI~--i~~~~~v~~i~~-----~~v~~~~g~----~~~~D~vl~a~  237 (438)
T PRK13512        188 -------------------DADMNQPILDELDKREIP--YRLNEEIDAING-----NEVTFKSGK----VEHYDMIIEGV  237 (438)
T ss_pred             -------------------CHHHHHHHHHHHHhcCCE--EEECCeEEEEeC-----CEEEECCCC----EEEeCEEEECc
Confidence                               145677788888888988  999999999863     245554433    68999999999


Q ss_pred             CCCCCCccC
Q 013303          163 GHFSVPRLA  171 (446)
Q Consensus       163 G~~s~p~~p  171 (446)
                      |  ..|+.+
T Consensus       238 G--~~pn~~  244 (438)
T PRK13512        238 G--THPNSK  244 (438)
T ss_pred             C--CCcChH
Confidence            9  677654

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=98.47  E-value=1.3e-06  Score=86.96  Aligned_cols=99  Identities=28%  Similarity=0.444  Sum_probs=78.8

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d   82 (446)
                      ++|||||+|+.|+.+|..|++.|++|+++|+.+++++....                                       
T Consensus       137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~---------------------------------------  177 (415)
T COG0446         137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD---------------------------------------  177 (415)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhh---------------------------------------
Confidence            68999999999999999999999999999998876554320                                       


Q ss_pred             CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceE---EEEEeCCCceEEEEEcEEE
Q 013303           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK---VKSRKKDDVVEEETFDAVV  159 (446)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~---v~~~~~~~~~~~~~~d~VV  159 (446)
                                          .++.+.+.+..+.++++  +++++.+..|+... +...   +....+    ..+.+|.++
T Consensus       178 --------------------~~~~~~~~~~l~~~gi~--~~~~~~~~~i~~~~-~~~~~~~~~~~~~----~~~~~d~~~  230 (415)
T COG0446         178 --------------------PEVAEELAELLEKYGVE--LLLGTKVVGVEGKG-NTLVVERVVGIDG----EEIKADLVI  230 (415)
T ss_pred             --------------------HHHHHHHHHHHHHCCcE--EEeCCceEEEEccc-CcceeeEEEEeCC----cEEEeeEEE
Confidence                                46678888888888977  88999999998764 2222   333333    378999999


Q ss_pred             EccCCCCCCc
Q 013303          160 VCNGHFSVPR  169 (446)
Q Consensus       160 vAtG~~s~p~  169 (446)
                      +++|  ..|+
T Consensus       231 ~~~g--~~p~  238 (415)
T COG0446         231 IGPG--ERPN  238 (415)
T ss_pred             Eeec--cccc
Confidence            9999  6665

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.46  E-value=8.7e-07  Score=92.12  Aligned_cols=65  Identities=20%  Similarity=0.103  Sum_probs=45.9

Q ss_pred             CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCC---CceE-EEEEe-CCCceEEEEEcEEEEccCCCCC
Q 013303          101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES---NKWK-VKSRK-KDDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       101 ~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~---~~~~-v~~~~-~~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      ++..+.+.|.+.+.+.++.  +..++.|+.+...++   +... +...+ ..++...+.++.||+|||.++.
T Consensus       138 tG~~i~~~L~~~~~~~gv~--i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~  207 (583)
T PRK08205        138 TGHMILQTLYQNCVKHGVE--FFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGR  207 (583)
T ss_pred             CHHHHHHHHHHHHHhcCCE--EEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCcc
Confidence            4678889999999888887  999999999875431   2221 22222 2334457889999999997653

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=98.46  E-value=1.3e-06  Score=84.77  Aligned_cols=65  Identities=22%  Similarity=0.334  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCceEEEEEeCC-CceEEEEEcEEEEccCCCCCCc
Q 013303          103 EEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVVCNGHFSVPR  169 (446)
Q Consensus       103 ~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~-~~~~~~~~d~VVvAtG~~s~p~  169 (446)
                      ..+.+-+.+++++. +..  ++++++|+.|++.+++.|.|.+.+.. ++..++.+++|+|+.|.++-+-
T Consensus       181 G~LTr~l~~~l~~~~~~~--~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~L  247 (488)
T PF06039_consen  181 GALTRQLVEYLQKQKGFE--LHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPL  247 (488)
T ss_pred             HHHHHHHHHHHHhCCCcE--EEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHH
Confidence            34455555555555 666  99999999999998788999998743 4567899999999999876553

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.45  E-value=6.7e-07  Score=92.96  Aligned_cols=40  Identities=23%  Similarity=0.278  Sum_probs=35.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCC---CcEEEEeeCCCcCcee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREG---HTVVVYEKGEQVGGSW   41 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g---~~v~v~e~~~~~GG~w   41 (446)
                      ..||+|||||.|||+||..+++.|   .+|+|+||....||..
T Consensus         5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s   47 (577)
T PRK06069          5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHS   47 (577)
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCc
Confidence            469999999999999999999998   8999999987666543

>PRK14727 putative mercuric reductase; Provisional

Probab=98.44  E-value=2.9e-06  Score=86.26  Aligned_cols=99  Identities=13%  Similarity=0.169  Sum_probs=76.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.. +   +..                                      
T Consensus       188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~-~---l~~--------------------------------------  225 (479)
T PRK14727        188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARST-L---LFR--------------------------------------  225 (479)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC-C---CCc--------------------------------------
Confidence            3689999999999999999999999999998742 1   000                                      


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                         ..+++.+.+.+..++.|+.  ++++++|..++..+ +.+.+...++     ++.+|.||+|
T Consensus       226 -------------------~d~~~~~~l~~~L~~~GV~--i~~~~~V~~i~~~~-~~~~v~~~~g-----~i~aD~VlvA  278 (479)
T PRK14727        226 -------------------EDPLLGETLTACFEKEGIE--VLNNTQASLVEHDD-NGFVLTTGHG-----ELRAEKLLIS  278 (479)
T ss_pred             -------------------chHHHHHHHHHHHHhCCCE--EEcCcEEEEEEEeC-CEEEEEEcCC-----eEEeCEEEEc
Confidence                               0146777888888888988  89999999998655 5555554322     5889999999


Q ss_pred             cCCCCCCccC
Q 013303          162 NGHFSVPRLA  171 (446)
Q Consensus       162 tG~~s~p~~p  171 (446)
                      +|  ..|+..
T Consensus       279 ~G--~~pn~~  286 (479)
T PRK14727        279 TG--RHANTH  286 (479)
T ss_pred             cC--CCCCcc
Confidence            99  677654

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=98.44  E-value=1.2e-06  Score=81.08  Aligned_cols=41  Identities=37%  Similarity=0.579  Sum_probs=37.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~   43 (446)
                      +++|+|||+|++||+||..|+++ ++|++||...++||.-+.
T Consensus         8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~T   48 (447)
T COG2907           8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANT   48 (447)
T ss_pred             CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccce
Confidence            46899999999999999999876 899999999999997654

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.44  E-value=9.9e-07  Score=91.70  Aligned_cols=38  Identities=24%  Similarity=0.271  Sum_probs=34.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG   39 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG   39 (446)
                      +.||+|||+|.|||+||..+++.|.+|+|+||....||
T Consensus         3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g   40 (589)
T PRK08641          3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRS   40 (589)
T ss_pred             CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence            56999999999999999999999999999999876543

>PLN02815 L-aspartate oxidase

Probab=98.44  E-value=8e-07  Score=91.99  Aligned_cols=163  Identities=17%  Similarity=0.144  Sum_probs=84.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCC--CC----------CCCCccCCccCce
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGV--DP----------NRYPVHSSLYKSL   69 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~--~p----------~~~~~~~~~y~~l   69 (446)
                      ..||+|||+|.|||+||..+++.| +|+|+|+....||.-......-....+.  .+          +..+......+.+
T Consensus        29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~~~  107 (594)
T PLN02815         29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDEETVRVV  107 (594)
T ss_pred             ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCCcHHHHHHH
Confidence            369999999999999999999999 9999999887766332221100000000  00          0000000001111


Q ss_pred             eecCCCCCccc--CCCCCCcCC-------CCCCCC-CC----CCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEc
Q 013303           70 RVNLPRELMGF--QAYPFVARN-------YEGSVD-LR----RYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLV  134 (446)
Q Consensus        70 ~~~~~~~~~~~--~d~~~~~~~-------~~~~~~-~~----~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~  134 (446)
                      ..+.+..+-.+  -..+|....       ...+.. .+    .-.++..+...|.+.+.+. ++.  +..++.++.+-.+
T Consensus       108 ~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~--i~~~~~~~~Li~~  185 (594)
T PLN02815        108 CTEGPERVKELIAMGASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNIT--FFEHHFAIDLLTS  185 (594)
T ss_pred             HHHHHHHHHHHHHhCCeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCE--EEeceEhheeeee
Confidence            11111110000  011221100       000000 00    0124677888887777654 676  8889999998764


Q ss_pred             CCCc----eEEEEEe-CCCceEEEEEcEEEEccCCCCC
Q 013303          135 ESNK----WKVKSRK-KDDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       135 ~~~~----~~v~~~~-~~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      +++.    .-+...+ .++....+.++.||+|||.+..
T Consensus       186 ~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~  223 (594)
T PLN02815        186 QDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGH  223 (594)
T ss_pred             cCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCccee
Confidence            3232    1233322 2344567889999999997553

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.44  E-value=9e-07  Score=81.04  Aligned_cols=164  Identities=20%  Similarity=0.231  Sum_probs=93.2

Q ss_pred             eEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCC-------CCCCCCCCC-----cc-------CC
Q 013303            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDP-------LGVDPNRYP-----VH-------SS   64 (446)
Q Consensus         4 ~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~-------~g~~p~~~~-----~~-------~~   64 (446)
                      .|+|||+|.|||+|+..+...|-.|+++|+...+||.-.......+-.       .+..-+..+     +.       ..
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~~e   90 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGVPE   90 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCcHH
Confidence            599999999999999999998877999999999998765432211100       000000000     00       01


Q ss_pred             ccCceeecCCCCCcccC-CCCCCc---------CCCCCCCCCCCCCCHHHHHHHHHHHHHHhCC----CCcEEeCeEEEE
Q 013303           65 LYKSLRVNLPRELMGFQ-AYPFVA---------RNYEGSVDLRRYPGHEEVLRYLQNFAREFGV----DQVVRLHTEVLN  130 (446)
Q Consensus        65 ~y~~l~~~~~~~~~~~~-d~~~~~---------~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l----~~~i~~~~~V~~  130 (446)
                      ..+.|..+++...--+. .|....         .....++.....|++.++...|....+++.-    .-.|..|++|+.
T Consensus        91 Lm~~La~~S~~AvewL~~ef~lkld~la~lgGHSvpRTHr~s~plppgfei~~~L~~~l~k~as~~pe~~ki~~nskvv~  170 (477)
T KOG2404|consen   91 LMEKLAANSASAVEWLRGEFDLKLDLLAQLGGHSVPRTHRSSGPLPPGFEIVKALSTRLKKKASENPELVKILLNSKVVD  170 (477)
T ss_pred             HHHHHHhcCHHHHHHHhhhcccchHHHHHhcCCCCCcccccCCCCCCchHHHHHHHHHHHHhhhcChHHHhhhhcceeee
Confidence            11222222221110000 011000         0000122334455666666666665555422    124788999999


Q ss_pred             EEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303          131 ARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       131 v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      |.+..+...-|.+.+..++...+.++.||+|||.|+.
T Consensus       171 il~n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~y  207 (477)
T KOG2404|consen  171 ILRNNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGY  207 (477)
T ss_pred             eecCCCeEEEEEEEcCCCCccceecCceEEecCCcCc
Confidence            9976633455777776666678999999999998664

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.43  E-value=2.4e-07  Score=94.18  Aligned_cols=43  Identities=42%  Similarity=0.541  Sum_probs=40.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT   44 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~   44 (446)
                      ++||+|||||++||+||..|++.|++|+|+||++.+||..+..
T Consensus         3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~   45 (487)
T COG1233           3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTF   45 (487)
T ss_pred             CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEE
Confidence            5899999999999999999999999999999999999976653

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=98.42  E-value=9.2e-07  Score=91.82  Aligned_cols=164  Identities=13%  Similarity=0.122  Sum_probs=84.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCCCcCceeeeCCCCCCCCCCC--CC----------CCCCccCCccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGV--DP----------NRYPVHSSLYK   67 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~--~p----------~~~~~~~~~y~   67 (446)
                      ..||+|||||.|||+||..+++.  |.+|+|+||....||.............+.  .+          +..+.......
T Consensus         4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~   83 (582)
T PRK09231          4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLCEQDVVE   83 (582)
T ss_pred             eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChhhccchhhhhcCCCCCHHHHHHHHHHhcccCCCHHHHH
Confidence            46999999999999999999987  479999999876665443321100000000  00          00000000011


Q ss_pred             ceeecCCCCC--cccCCCCCCcCCC--------CCCCCCCC-C---CCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEE
Q 013303           68 SLRVNLPREL--MGFQAYPFVARNY--------EGSVDLRR-Y---PGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNAR  132 (446)
Q Consensus        68 ~l~~~~~~~~--~~~~d~~~~~~~~--------~~~~~~~~-~---~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~  132 (446)
                      .+..+.+..+  +.--..+|.....        ......+. +   .++..+...|.+.+.+. ++.  +..++.|+++.
T Consensus        84 ~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~--i~~~~~v~~Li  161 (582)
T PRK09231         84 YFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQ--RFDEHFVLDIL  161 (582)
T ss_pred             HHHHHHHHHHHHHHHcCCCcccCCCCceeeeccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcE--EEeCeEEEEEE
Confidence            1111111110  0001223321100        00000000 1   14567777777766654 565  78899999987


Q ss_pred             EcCCCceE-EEE-EeCCCceEEEEEcEEEEccCCCCCC
Q 013303          133 LVESNKWK-VKS-RKKDDVVEEETFDAVVVCNGHFSVP  168 (446)
Q Consensus       133 ~~~~~~~~-v~~-~~~~~~~~~~~~d~VVvAtG~~s~p  168 (446)
                      ..+ +... +.. ...++....+.++.||+|||.++..
T Consensus       162 ~~~-g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l  198 (582)
T PRK09231        162 VDD-GHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRV  198 (582)
T ss_pred             EeC-CEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCC
Confidence            654 4332 222 2223345678999999999976643

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=98.42  E-value=1.6e-06  Score=82.53  Aligned_cols=37  Identities=35%  Similarity=0.491  Sum_probs=34.3

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV   37 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~   37 (446)
                      ++.+|+|||||.+|+++|..|.+.|++|+|+|+.+.+
T Consensus         1 ~~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~   37 (420)
T KOG2614|consen    1 KEPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP   37 (420)
T ss_pred             CCCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence            4679999999999999999999999999999997655

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.40  E-value=2.1e-07  Score=69.75  Aligned_cols=66  Identities=26%  Similarity=0.330  Sum_probs=49.4

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecCCcc----------ccccCCCC-CCeeeccceeEEccCCc---EEecCC
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVADE----------THEKQPGY-DNMWLHSMVERANEDGT---VVFRNG  264 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~~----------~~~~~~~~-~~v~~~~~v~~i~~~~~---v~~~dG  264 (446)
                      +|+|||+|.+|+|+|..|++.+++|+++++++...          ..+.+.+. -++..+..++++..++.   |.|+||
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g   80 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG   80 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence            68999999999999999999999999999988610          01112222 26677788888876543   777776

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.40  E-value=2e-06  Score=92.45  Aligned_cols=102  Identities=21%  Similarity=0.242  Sum_probs=77.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+|+|+.+.+...                                         
T Consensus       140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~-----------------------------------------  178 (785)
T TIGR02374       140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAK-----------------------------------------  178 (785)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhh-----------------------------------------
Confidence            368999999999999999999999999999986532000                                         


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                      .  -.+++.+.+.+..++.|+.  +++++.|+++.... ....|++.++.    ++.+|.||+|
T Consensus       179 ----------------~--ld~~~~~~l~~~l~~~GV~--v~~~~~v~~i~~~~-~~~~v~~~dG~----~i~~D~Vi~a  233 (785)
T TIGR02374       179 ----------------Q--LDQTAGRLLQRELEQKGLT--FLLEKDTVEIVGAT-KADRIRFKDGS----SLEADLIVMA  233 (785)
T ss_pred             ----------------h--cCHHHHHHHHHHHHHcCCE--EEeCCceEEEEcCC-ceEEEEECCCC----EEEcCEEEEC
Confidence                            0  0135567777888888998  99999999887543 33445555543    7999999999


Q ss_pred             cCCCCCCccC
Q 013303          162 NGHFSVPRLA  171 (446)
Q Consensus       162 tG~~s~p~~p  171 (446)
                      +|  ..|+..
T Consensus       234 ~G--~~Pn~~  241 (785)
T TIGR02374       234 AG--IRPNDE  241 (785)
T ss_pred             CC--CCcCcH
Confidence            99  677654

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=98.40  E-value=2.9e-06  Score=88.22  Aligned_cols=43  Identities=37%  Similarity=0.414  Sum_probs=39.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT   44 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~   44 (446)
                      ..||+|||+|++|+++|..+++.|.+|+|+|+...+||.....
T Consensus        16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~~s   58 (578)
T PRK12843         16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTATS   58 (578)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCccccc
Confidence            4699999999999999999999999999999998888877554

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=98.39  E-value=1.6e-06  Score=89.95  Aligned_cols=163  Identities=16%  Similarity=0.144  Sum_probs=85.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCC------------CCccCCccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR------------YPVHSSLYK   67 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~------------~~~~~~~y~   67 (446)
                      ..||+|||||.|||+||..+++.  |.+|+|+||....||.............+..-+.            .+......+
T Consensus         3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~lv~   82 (580)
T TIGR01176         3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDVVE   82 (580)
T ss_pred             ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHHHH
Confidence            46999999999999999999987  5899999998776664432211100000000000            000000001


Q ss_pred             ceeecCCCCCccc--CCCCCCcCCC--------CCCCCCC-CC---CCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEE
Q 013303           68 SLRVNLPRELMGF--QAYPFVARNY--------EGSVDLR-RY---PGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNAR  132 (446)
Q Consensus        68 ~l~~~~~~~~~~~--~d~~~~~~~~--------~~~~~~~-~~---~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~  132 (446)
                      .+..+.+..+-.+  -..||.....        ......+ .+   .++..+...|.+.+.+. ++.  +..++.|+.+.
T Consensus        83 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~--i~~~~~v~~Li  160 (580)
T TIGR01176        83 YFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIM--RYDEWFVTDLL  160 (580)
T ss_pred             HHHHHhHHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCE--EEeCeEEEEEE
Confidence            1111111111000  1122221100        0000000 11   25678888888777664 565  77889999987


Q ss_pred             EcCCCceE-EEE-EeCCCceEEEEEcEEEEccCCCCC
Q 013303          133 LVESNKWK-VKS-RKKDDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       133 ~~~~~~~~-v~~-~~~~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      ..+ +... +.. ...++....+.++.||+|||.++.
T Consensus       161 ~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~  196 (580)
T TIGR01176       161 VDD-GRVCGLVAIEMAEGRLVTILADAVVLATGGAGR  196 (580)
T ss_pred             eeC-CEEEEEEEEEcCCCcEEEEecCEEEEcCCCCcc
Confidence            654 4222 222 222344567899999999997664

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=98.39  E-value=5.6e-06  Score=92.49  Aligned_cols=40  Identities=33%  Similarity=0.458  Sum_probs=37.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCcee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW   41 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w   41 (446)
                      ..||+|||+|.||++||..+++.|.+|+|+||.+..||.-
T Consensus       409 ~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s  448 (1167)
T PTZ00306        409 PARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNS  448 (1167)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCch
Confidence            4699999999999999999999999999999998888764

>PRK13748 putative mercuric reductase; Provisional

Probab=98.39  E-value=3.9e-06  Score=87.27  Aligned_cols=100  Identities=19%  Similarity=0.309  Sum_probs=77.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.. +   +..                                      
T Consensus       270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~-~---l~~--------------------------------------  307 (561)
T PRK13748        270 PERLAVIGSSVVALELAQAFARLGSKVTILARST-L---FFR--------------------------------------  307 (561)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc-c---ccc--------------------------------------
Confidence            4689999999999999999999999999999742 1   000                                      


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                         ...++.+.+.+..++.|+.  ++++++|.+++..+ +.+.+...++     ++.+|.||+|
T Consensus       308 -------------------~d~~~~~~l~~~l~~~gI~--i~~~~~v~~i~~~~-~~~~v~~~~~-----~i~~D~vi~a  360 (561)
T PRK13748        308 -------------------EDPAIGEAVTAAFRAEGIE--VLEHTQASQVAHVD-GEFVLTTGHG-----ELRADKLLVA  360 (561)
T ss_pred             -------------------cCHHHHHHHHHHHHHCCCE--EEcCCEEEEEEecC-CEEEEEecCC-----eEEeCEEEEc
Confidence                               0146677888888888988  89999999998654 5555544322     5899999999


Q ss_pred             cCCCCCCccCC
Q 013303          162 NGHFSVPRLAQ  172 (446)
Q Consensus       162 tG~~s~p~~p~  172 (446)
                      +|  ..|+...
T Consensus       361 ~G--~~pn~~~  369 (561)
T PRK13748        361 TG--RAPNTRS  369 (561)
T ss_pred             cC--CCcCCCC
Confidence            99  7777653

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=98.39  E-value=4.7e-06  Score=84.72  Aligned_cols=102  Identities=20%  Similarity=0.210  Sum_probs=77.5

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d   82 (446)
                      ++|+|||||+.|+.+|..|++.|.+|+++++. .+.   .                                        
T Consensus       181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l---~----------------------------------------  216 (484)
T TIGR01438       181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILL---R----------------------------------------  216 (484)
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-ccc---c----------------------------------------
Confidence            57999999999999999999999999999873 220   0                                        


Q ss_pred             CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEcc
Q 013303           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN  162 (446)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAt  162 (446)
                                     .+  ..++.+++.+..++.|++  +++++.+..+...+ +...|+..++.+ ..++.+|.||+|+
T Consensus       217 ---------------~~--d~~~~~~l~~~L~~~gV~--i~~~~~v~~v~~~~-~~~~v~~~~~~~-~~~i~~D~vl~a~  275 (484)
T TIGR01438       217 ---------------GF--DQDCANKVGEHMEEHGVK--FKRQFVPIKVEQIE-AKVKVTFTDSTN-GIEEEYDTVLLAI  275 (484)
T ss_pred             ---------------cc--CHHHHHHHHHHHHHcCCE--EEeCceEEEEEEcC-CeEEEEEecCCc-ceEEEeCEEEEEe
Confidence                           00  146778888888888988  99999999988654 444555544321 2368999999999


Q ss_pred             CCCCCCccC
Q 013303          163 GHFSVPRLA  171 (446)
Q Consensus       163 G~~s~p~~p  171 (446)
                      |  ..|+..
T Consensus       276 G--~~pn~~  282 (484)
T TIGR01438       276 G--RDACTR  282 (484)
T ss_pred             c--CCcCCC
Confidence            9  677754

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=98.37  E-value=4.3e-07  Score=91.80  Aligned_cols=41  Identities=29%  Similarity=0.587  Sum_probs=38.3

Q ss_pred             CeEEEECcChHHHHHHHHHHHCC--CcEEEEeeCCCcCceeee
Q 013303            3 RHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIY   43 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g--~~v~v~e~~~~~GG~w~~   43 (446)
                      ++|+|||||+|||+||+.|++.|  ++|+|+|+++++||....
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t   43 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQT   43 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEE
Confidence            57999999999999999999987  899999999999998765

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=98.37  E-value=6.8e-07  Score=88.04  Aligned_cols=41  Identities=34%  Similarity=0.587  Sum_probs=38.5

Q ss_pred             CeEEEECcChHHHHHHHHHHHCC--CcEEEEeeCCCcCceeee
Q 013303            3 RHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIY   43 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g--~~v~v~e~~~~~GG~w~~   43 (446)
                      ++|||||||++||+||..|.+.+  .+++|||+.+++||....
T Consensus         1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T   43 (444)
T COG1232           1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRT   43 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEE
Confidence            57999999999999999999999  999999999999998775

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.37  E-value=3.2e-06  Score=86.66  Aligned_cols=41  Identities=32%  Similarity=0.476  Sum_probs=36.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~   43 (446)
                      ..||+|||+| +||+||.++++.|.+|+|+|+.+..||.-..
T Consensus         7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~~   47 (513)
T PRK12837          7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTAY   47 (513)
T ss_pred             ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcceec
Confidence            4699999999 9999999999999999999999887765443

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.36  E-value=5.2e-06  Score=84.76  Aligned_cols=101  Identities=20%  Similarity=0.207  Sum_probs=77.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++++. .+.   .                                       
T Consensus       182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l---~---------------------------------------  218 (499)
T PTZ00052        182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPL---R---------------------------------------  218 (499)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-ccc---c---------------------------------------
Confidence            368999999999999999999999999999863 220   0                                       


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                      .+  ..++.+.+.+..++.++.  +..++.|..+...+ +...+.+.++.    ++.+|.|++|
T Consensus       219 ----------------~~--d~~~~~~l~~~l~~~GV~--i~~~~~v~~v~~~~-~~~~v~~~~g~----~i~~D~vl~a  273 (499)
T PTZ00052        219 ----------------GF--DRQCSEKVVEYMKEQGTL--FLEGVVPINIEKMD-DKIKVLFSDGT----TELFDTVLYA  273 (499)
T ss_pred             ----------------cC--CHHHHHHHHHHHHHcCCE--EEcCCeEEEEEEcC-CeEEEEECCCC----EEEcCEEEEe
Confidence                            00  145677788888888988  89999999988654 44455554432    6789999999


Q ss_pred             cCCCCCCccCC
Q 013303          162 NGHFSVPRLAQ  172 (446)
Q Consensus       162 tG~~s~p~~p~  172 (446)
                      +|  ..|+...
T Consensus       274 ~G--~~pn~~~  282 (499)
T PTZ00052        274 TG--RKPDIKG  282 (499)
T ss_pred             eC--CCCCccc
Confidence            99  6777653

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=98.36  E-value=1.5e-06  Score=90.52  Aligned_cols=34  Identities=26%  Similarity=0.359  Sum_probs=31.3

Q ss_pred             EEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcC
Q 013303            5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG   38 (446)
Q Consensus         5 V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G   38 (446)
                      |+|||+|.|||+||..+++.|.+|+|+||...++
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~   34 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPR   34 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCC
Confidence            7999999999999999999999999999987453

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK07395 L-aspartate oxidase; Provisional

Probab=98.36  E-value=9.3e-07  Score=91.05  Aligned_cols=38  Identities=29%  Similarity=0.242  Sum_probs=33.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCce
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS   40 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~   40 (446)
                      ..||+|||+|.|||+||..++ .|.+|+|+||....||.
T Consensus         9 e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~   46 (553)
T PRK07395          9 QFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSA   46 (553)
T ss_pred             cCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCc
Confidence            469999999999999999986 59999999998876664

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=98.35  E-value=7e-06  Score=81.85  Aligned_cols=62  Identities=19%  Similarity=0.060  Sum_probs=44.3

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCce-EEEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303           99 YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW-KVKSRKKDDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus        99 ~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~-~v~~~~~~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      +.....+...+.+.+.+.|+.  +..+++|+++...+++.+ .|.+.++     ++.++.||||+|.++.
T Consensus       179 ~v~p~~l~~~l~~~a~~~Gv~--~~~~~~V~~i~~~~~~~~~~v~t~~g-----~i~a~~vVvaagg~~~  241 (407)
T TIGR01373       179 TARHDAVAWGYARGADRRGVD--IIQNCEVTGFIRRDGGRVIGVETTRG-----FIGAKKVGVAVAGHSS  241 (407)
T ss_pred             cCCHHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcCCCcEEEEEeCCc-----eEECCEEEECCChhhH
Confidence            344556666677788888987  888999999976532443 3555443     5899999999997553

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK07512 L-aspartate oxidase; Provisional

Probab=98.35  E-value=1.1e-06  Score=90.06  Aligned_cols=63  Identities=16%  Similarity=0.057  Sum_probs=43.1

Q ss_pred             CHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCceE-EEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303          101 GHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWK-VKSRKKDDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       101 ~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~-v~~~~~~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      ++..+.+.|.+.+.+. ++.  +..++.|+.+..++ +.+. +.+.+. +....+.++.||+|||.++.
T Consensus       134 ~G~~l~~~L~~~~~~~~gV~--i~~~~~v~~Li~~~-g~v~Gv~~~~~-~~~~~i~Ak~VVLATGG~~~  198 (513)
T PRK07512        134 AGAAIMRALIAAVRATPSIT--VLEGAEARRLLVDD-GAVAGVLAATA-GGPVVLPARAVVLATGGIGG  198 (513)
T ss_pred             CHHHHHHHHHHHHHhCCCCE--EEECcChhheeecC-CEEEEEEEEeC-CeEEEEECCEEEEcCCCCcC
Confidence            4567888888877764 777  88899999886543 4332 333332 22346889999999997653

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=98.35  E-value=1.5e-05  Score=83.34  Aligned_cols=107  Identities=21%  Similarity=0.269  Sum_probs=76.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+..|..|++.|.+|+++|+.+.+...                                         
T Consensus       312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~-----------------------------------------  350 (659)
T PTZ00153        312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPL-----------------------------------------  350 (659)
T ss_pred             CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccc-----------------------------------------
Confidence            368999999999999999999999999999997654110                                         


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHH-HHhCCCCcEEeCeEEEEEEEcCCCc-eEEEEEeCC-C----------
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFA-REFGVDQVVRLHTEVLNARLVESNK-WKVKSRKKD-D----------  148 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~-~~~~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~~~-~----------  148 (446)
                                         -..++.+++.... ++.++.  ++.++.|.+|+..+++. .++...+.. +          
T Consensus       351 -------------------~d~eis~~l~~~ll~~~GV~--I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~  409 (659)
T PTZ00153        351 -------------------LDADVAKYFERVFLKSKPVR--VHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMN  409 (659)
T ss_pred             -------------------CCHHHHHHHHHHHhhcCCcE--EEcCCEEEEEEecCCceEEEEEEeccccccccccccccc
Confidence                               0145667777654 567887  99999999998654222 334332210 1          


Q ss_pred             ceEEEEEcEEEEccCCCCCCccCC
Q 013303          149 VVEEETFDAVVVCNGHFSVPRLAQ  172 (446)
Q Consensus       149 ~~~~~~~d~VVvAtG~~s~p~~p~  172 (446)
                      ...++.+|.|++|+|  .+|+...
T Consensus       410 ~~~~i~aD~VlvAtG--r~Pnt~~  431 (659)
T PTZ00153        410 DIKETYVDSCLVATG--RKPNTNN  431 (659)
T ss_pred             cceEEEcCEEEEEEC--cccCCcc
Confidence            123689999999999  7777654

>PLN02546 glutathione reductase

Probab=98.34  E-value=5.1e-06  Score=85.44  Aligned_cols=102  Identities=17%  Similarity=0.194  Sum_probs=76.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+..|..|++.|.+|+++++.+.+...                                         
T Consensus       252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~-----------------------------------------  290 (558)
T PLN02546        252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG-----------------------------------------  290 (558)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc-----------------------------------------
Confidence            468999999999999999999999999999987643110                                         


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                         -.+++.+++.+..++.|++  ++++++|.++....++...+..  .++  ....+|.||+|
T Consensus       291 -------------------~d~~~~~~l~~~L~~~GV~--i~~~~~v~~i~~~~~g~v~v~~--~~g--~~~~~D~Viva  345 (558)
T PLN02546        291 -------------------FDEEVRDFVAEQMSLRGIE--FHTEESPQAIIKSADGSLSLKT--NKG--TVEGFSHVMFA  345 (558)
T ss_pred             -------------------cCHHHHHHHHHHHHHCCcE--EEeCCEEEEEEEcCCCEEEEEE--CCe--EEEecCEEEEe
Confidence                               0156777888888888988  9999999999865424333332  221  23458999999


Q ss_pred             cCCCCCCccC
Q 013303          162 NGHFSVPRLA  171 (446)
Q Consensus       162 tG~~s~p~~p  171 (446)
                      +|  ..|+..
T Consensus       346 ~G--~~Pnt~  353 (558)
T PLN02546        346 TG--RKPNTK  353 (558)
T ss_pred             ec--cccCCC
Confidence            99  677764

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.33  E-value=4.3e-06  Score=90.01  Aligned_cols=102  Identities=20%  Similarity=0.160  Sum_probs=77.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++++|||||+.|+.+|..|++.|.+|+|+|+.+.+-..                                         
T Consensus       145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~-----------------------------------------  183 (847)
T PRK14989        145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAE-----------------------------------------  183 (847)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhh-----------------------------------------
Confidence            368999999999999999999999999999986532000                                         


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCC-CceEEEEEeCCCceEEEEEcEEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRKKDDVVEEETFDAVVV  160 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~-~~~~v~~~~~~~~~~~~~~d~VVv  160 (446)
                                      .  -..++.+.+.+..++.|+.  +++++.|.+|....+ ....+.+.++.    ++.+|.||+
T Consensus       184 ----------------~--ld~~~~~~l~~~L~~~GV~--v~~~~~v~~I~~~~~~~~~~v~~~dG~----~i~~D~Vv~  239 (847)
T PRK14989        184 ----------------Q--LDQMGGEQLRRKIESMGVR--VHTSKNTLEIVQEGVEARKTMRFADGS----ELEVDFIVF  239 (847)
T ss_pred             ----------------h--cCHHHHHHHHHHHHHCCCE--EEcCCeEEEEEecCCCceEEEEECCCC----EEEcCEEEE
Confidence                            0  0146677888888889998  999999999975431 22345555443    799999999


Q ss_pred             ccCCCCCCcc
Q 013303          161 CNGHFSVPRL  170 (446)
Q Consensus       161 AtG~~s~p~~  170 (446)
                      |+|  .+|+.
T Consensus       240 A~G--~rPn~  247 (847)
T PRK14989        240 STG--IRPQD  247 (847)
T ss_pred             CCC--cccCc
Confidence            999  67765

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=98.32  E-value=2.8e-06  Score=85.29  Aligned_cols=63  Identities=17%  Similarity=0.141  Sum_probs=45.5

Q ss_pred             CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCC
Q 013303          101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFS  166 (446)
Q Consensus       101 ~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s  166 (446)
                      ....+.+.|.+.+++.+++  |+++++|+++..++++.+.+-+....+ ...+.++.||+|||.++
T Consensus       121 ~g~~l~~~L~~~a~~~Gv~--i~~~~~v~~l~~~~~~g~v~gv~~~~~-~~~i~ak~VIlAtGG~~  183 (432)
T TIGR02485       121 GGKALTNALYSSAERLGVE--IRYGIAVDRIPPEAFDGAHDGPLTTVG-THRITTQALVLAAGGLG  183 (432)
T ss_pred             CHHHHHHHHHHHHHHcCCE--EEeCCEEEEEEecCCCCeEEEEEEcCC-cEEEEcCEEEEcCCCcc
Confidence            3567888999999999988  999999999986531334433322111 24788999999999654

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK09077 L-aspartate oxidase; Provisional

Probab=98.32  E-value=3.1e-06  Score=87.15  Aligned_cols=38  Identities=39%  Similarity=0.529  Sum_probs=33.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCce
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS   40 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~   40 (446)
                      ..||+|||+|.|||+||..+++. .+|+|+||....||.
T Consensus         8 ~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~   45 (536)
T PRK09077          8 QCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGS   45 (536)
T ss_pred             cCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCC
Confidence            46999999999999999999886 899999998876663

>PLN02268 probable polyamine oxidase

Probab=98.31  E-value=6.5e-07  Score=90.07  Aligned_cols=42  Identities=29%  Similarity=0.466  Sum_probs=39.1

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT   44 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~   44 (446)
                      ++|+|||||.|||+||+.|.+.|++|+|+|+++++||.....
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~   42 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTD   42 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeec
Confidence            489999999999999999999999999999999999987653

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=98.31  E-value=2.1e-06  Score=90.11  Aligned_cols=64  Identities=16%  Similarity=0.152  Sum_probs=45.2

Q ss_pred             CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCc-eEEEEEe-CCCceEEEEEcEEEEccCCCCC
Q 013303          101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRK-KDDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       101 ~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~-~~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      ++..+...|.+.+.+.++.  +..++.|+++..++ +. .-+...+ .+++...+.++.||+|||.+..
T Consensus       156 tG~~l~~~L~~~~~~~gv~--i~~~~~~~~Li~~~-g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~  221 (657)
T PRK08626        156 TGHTMLYAVDNEAIKLGVP--VHDRKEAIALIHDG-KRCYGAVVRCLITGELRAYVAKATLIATGGYGR  221 (657)
T ss_pred             cHHHHHHHHHHHHHhCCCE--EEeeEEEEEEEEEC-CEEEEEEEEEcCCCcEEEEEcCeEEECCCcccC
Confidence            3456777788888888887  89999999997654 43 2233433 2344567889999999997654

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=98.29  E-value=8.4e-07  Score=90.02  Aligned_cols=42  Identities=31%  Similarity=0.489  Sum_probs=39.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHC----CCcEEEEeeCCCcCceeee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLRE----GHTVVVYEKGEQVGGSWIY   43 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~----g~~v~v~e~~~~~GG~w~~   43 (446)
                      ++||+|||||+|||+||..|.+.    |++|+|+|+++++||....
T Consensus         2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t   47 (462)
T TIGR00562         2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQT   47 (462)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEE
Confidence            57999999999999999999998    9999999999999998765

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.28  E-value=1.6e-05  Score=79.67  Aligned_cols=94  Identities=30%  Similarity=0.398  Sum_probs=71.9

Q ss_pred             CeEEEECcChHHHHHHHHHHH--------------CCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCc
Q 013303            3 RHVAVIGAGAAGLVVGHELLR--------------EGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKS   68 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~--------------~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~   68 (446)
                      ++|+|||||++|+..|..|+.              .+.+|+++++.+.+..                             
T Consensus       174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~-----------------------------  224 (424)
T PTZ00318        174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLG-----------------------------  224 (424)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccc-----------------------------
Confidence            389999999999999999875              3688999998754311                             


Q ss_pred             eeecCCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCC
Q 013303           69 LRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDD  148 (446)
Q Consensus        69 l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~  148 (446)
                                                   .+  .+++.+++.+..++.|++  ++++++|.++...     .|.+.++. 
T Consensus       225 -----------------------------~~--~~~~~~~~~~~L~~~gV~--v~~~~~v~~v~~~-----~v~~~~g~-  265 (424)
T PTZ00318        225 -----------------------------SF--DQALRKYGQRRLRRLGVD--IRTKTAVKEVLDK-----EVVLKDGE-  265 (424)
T ss_pred             -----------------------------cC--CHHHHHHHHHHHHHCCCE--EEeCCeEEEEeCC-----EEEECCCC-
Confidence                                         01  146678888888889998  9999999998642     35555543 


Q ss_pred             ceEEEEEcEEEEccCCCCCCc
Q 013303          149 VVEEETFDAVVVCNGHFSVPR  169 (446)
Q Consensus       149 ~~~~~~~d~VVvAtG~~s~p~  169 (446)
                         ++.+|.||+|+|  ..|+
T Consensus       266 ---~i~~d~vi~~~G--~~~~  281 (424)
T PTZ00318        266 ---VIPTGLVVWSTG--VGPG  281 (424)
T ss_pred             ---EEEccEEEEccC--CCCc
Confidence               789999999999  4454

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=98.27  E-value=3.4e-06  Score=82.92  Aligned_cols=37  Identities=32%  Similarity=0.434  Sum_probs=33.6

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCc
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG   39 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG   39 (446)
                      .+|+|||||.+|+.+|..|++.|++|+|||+.+..+.
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~   37 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLT   37 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence            4799999999999999999999999999998776544

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK07233 hypothetical protein; Provisional

Probab=98.27  E-value=8.9e-07  Score=89.01  Aligned_cols=40  Identities=38%  Similarity=0.689  Sum_probs=37.8

Q ss_pred             eEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (446)
Q Consensus         4 ~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~   43 (446)
                      +|+|||||++||+||..|++.|++|+|+|+++.+||.+..
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s   40 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAAS   40 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceee
Confidence            6999999999999999999999999999999999998754

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=98.27  E-value=9.7e-07  Score=86.79  Aligned_cols=41  Identities=39%  Similarity=0.591  Sum_probs=38.5

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~   43 (446)
                      ++|+|+|||.|||+||.+|+++|++|+|+|+++.+||....
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s   41 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVAS   41 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeee
Confidence            58999999999999999999999999999999999997554

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=98.26  E-value=3.9e-06  Score=78.80  Aligned_cols=33  Identities=33%  Similarity=0.554  Sum_probs=31.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG   34 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~   34 (446)
                      ..||+|||||.+|.+.|..|++.|.+|.|+||.
T Consensus        45 ~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD   77 (509)
T KOG1298|consen   45 AADVIIVGAGVAGSALAYALAKDGRRVHVIERD   77 (509)
T ss_pred             cccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence            368999999999999999999999999999985

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=98.26  E-value=1.1e-06  Score=89.29  Aligned_cols=42  Identities=31%  Similarity=0.431  Sum_probs=38.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHC------CCcEEEEeeCCCcCceeee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLRE------GHTVVVYEKGEQVGGSWIY   43 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~------g~~v~v~e~~~~~GG~w~~   43 (446)
                      |++|+|||||+|||+||+.|.+.      |.+|+|+|+++++||....
T Consensus         1 m~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T   48 (463)
T PRK12416          1 MKTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHS   48 (463)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEE
Confidence            57899999999999999999986      3799999999999998765

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=98.25  E-value=1.2e-06  Score=85.15  Aligned_cols=42  Identities=29%  Similarity=0.498  Sum_probs=38.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~   43 (446)
                      +.||+|||||++|+++|..|++.|.+|+|+|+++.+||.+..
T Consensus         1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~   42 (377)
T TIGR00031         1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYD   42 (377)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceee
Confidence            469999999999999999999999999999999999996554

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PRK10262 thioredoxin reductase; Provisional

Probab=98.24  E-value=1.3e-05  Score=77.29  Aligned_cols=104  Identities=16%  Similarity=0.155  Sum_probs=74.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||+|..|+.+|..|++.+.+|+++++.+.+    ..                                      
T Consensus       146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~----~~--------------------------------------  183 (321)
T PRK10262        146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF----RA--------------------------------------  183 (321)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc----CC--------------------------------------
Confidence            468999999999999999999999999999986422    00                                      


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCC--CceEEEEEcEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD--DVVEEETFDAVV  159 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~--~~~~~~~~d~VV  159 (446)
                                          ...+.+.+.+..++.++.  +.+++.|.++.....+.-.|++.+..  +...++.+|.||
T Consensus       184 --------------------~~~~~~~~~~~l~~~gV~--i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv  241 (321)
T PRK10262        184 --------------------EKILIKRLMDKVENGNII--LHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLF  241 (321)
T ss_pred             --------------------CHHHHHHHHhhccCCCeE--EEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEE
Confidence                                023445566666667777  88899999997643122235555432  234579999999


Q ss_pred             EccCCCCCCccC
Q 013303          160 VCNGHFSVPRLA  171 (446)
Q Consensus       160 vAtG~~s~p~~p  171 (446)
                      +|+|  ..|+..
T Consensus       242 ~a~G--~~p~~~  251 (321)
T PRK10262        242 VAIG--HSPNTA  251 (321)
T ss_pred             EEeC--CccChh
Confidence            9999  676654

>PLN02576 protoporphyrinogen oxidase

Probab=98.22  E-value=1.4e-06  Score=89.14  Aligned_cols=42  Identities=38%  Similarity=0.586  Sum_probs=39.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHC-CCcEEEEeeCCCcCceeee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQVGGSWIY   43 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~-g~~v~v~e~~~~~GG~w~~   43 (446)
                      .+||+|||||++||+||..|.+. |++|+|+|+++++||....
T Consensus        12 ~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t   54 (496)
T PLN02576         12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITS   54 (496)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeE
Confidence            46899999999999999999999 9999999999999998665

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=98.20  E-value=1.5e-06  Score=88.86  Aligned_cols=42  Identities=38%  Similarity=0.448  Sum_probs=39.1

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT   44 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~   44 (446)
                      +||+|||||++||+||..|++.|++|+|+|+++.+||.....
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~   43 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTF   43 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcccee
Confidence            799999999999999999999999999999999999976543

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=98.19  E-value=4.4e-06  Score=84.04  Aligned_cols=59  Identities=22%  Similarity=0.248  Sum_probs=42.1

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCC
Q 013303          100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGH  164 (446)
Q Consensus       100 ~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~  164 (446)
                      ..+..+.++|.+.+.+.|++  +..+ +|+.+...+ +++...+...++  .++++|.||-|||.
T Consensus       151 lDR~~fd~~L~~~A~~~Gv~--~~~g-~V~~v~~~~-~g~i~~v~~~~g--~~i~ad~~IDASG~  209 (454)
T PF04820_consen  151 LDRAKFDQFLRRHAEERGVE--VIEG-TVVDVELDE-DGRITAVRLDDG--RTIEADFFIDASGR  209 (454)
T ss_dssp             EEHHHHHHHHHHHHHHTT-E--EEET--EEEEEE-T-TSEEEEEEETTS--EEEEESEEEE-SGG
T ss_pred             EeHHHHHHHHHHHHhcCCCE--EEeC-EEEEEEEcC-CCCEEEEEECCC--CEEEEeEEEECCCc
Confidence            47799999999999999998  5544 688888776 555544444332  47999999999994

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PLN02568 polyamine oxidase

Probab=98.17  E-value=2.4e-06  Score=87.56  Aligned_cols=43  Identities=30%  Similarity=0.546  Sum_probs=39.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCC-----CcEEEEeeCCCcCceeeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREG-----HTVVVYEKGEQVGGSWIYT   44 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g-----~~v~v~e~~~~~GG~w~~~   44 (446)
                      .+||+|||||++||+||+.|++.|     ++|+|||+++.+||.+...
T Consensus         5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~   52 (539)
T PLN02568          5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTS   52 (539)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEE
Confidence            468999999999999999999887     8999999999999987754

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=98.16  E-value=2.8e-06  Score=82.22  Aligned_cols=42  Identities=33%  Similarity=0.619  Sum_probs=37.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCCCcCceeee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQVGGSWIY   43 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~~~GG~w~~   43 (446)
                      ..+|||||||.|||+||..|.+.|+ +++|||..+++||..+.
T Consensus        21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~t   63 (498)
T KOG0685|consen   21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHT   63 (498)
T ss_pred             CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEee
Confidence            3589999999999999999998774 89999999999998765

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.15  E-value=2.1e-05  Score=80.68  Aligned_cols=101  Identities=21%  Similarity=0.221  Sum_probs=71.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.+.+|+++++.+.+.                                           
T Consensus       352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~-------------------------------------------  388 (515)
T TIGR03140       352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK-------------------------------------------  388 (515)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC-------------------------------------------
Confidence            3689999999999999999999999999999754220                                           


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCCCcEEeCeEEEEEEEcCCCceEEEEEeCC-CceEEEEEcEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVV  159 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~-~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~-~~~~~~~~d~VV  159 (446)
                                         .    ...+.+.+++ .|+.  +++++.|.++...++....|++.++. ++.+++.+|.|+
T Consensus       389 -------------------~----~~~l~~~l~~~~gV~--i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi  443 (515)
T TIGR03140       389 -------------------A----DKVLQDKLKSLPNVD--ILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVF  443 (515)
T ss_pred             -------------------h----hHHHHHHHhcCCCCE--EEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEE
Confidence                               0    0123333443 4777  89999999997643122236665542 344579999999


Q ss_pred             EccCCCCCCccCC
Q 013303          160 VCNGHFSVPRLAQ  172 (446)
Q Consensus       160 vAtG~~s~p~~p~  172 (446)
                      +|+|  ..|+..-
T Consensus       444 ~a~G--~~Pn~~~  454 (515)
T TIGR03140       444 VQIG--LVPNTEW  454 (515)
T ss_pred             EEeC--CcCCchH
Confidence            9999  7776543

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR02734 crtI_fam phytoene desaturase

Probab=98.14  E-value=2e-06  Score=88.13  Aligned_cols=40  Identities=35%  Similarity=0.451  Sum_probs=37.4

Q ss_pred             EEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeC
Q 013303            5 VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT   44 (446)
Q Consensus         5 V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~   44 (446)
                      |+|||||.+||+||..|++.|++|+|+|+++.+||.....
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~   40 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVL   40 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEE
Confidence            6999999999999999999999999999999999987653

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.11  E-value=3.4e-05  Score=73.36  Aligned_cols=98  Identities=19%  Similarity=0.201  Sum_probs=68.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||+|++|+-+|..|++.+.+|+++++.+.+    ..                                      
T Consensus       141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~----~~--------------------------------------  178 (300)
T TIGR01292       141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKF----RA--------------------------------------  178 (300)
T ss_pred             CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCccc----Cc--------------------------------------
Confidence            368999999999999999999999999999985421    00                                      


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVV  159 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~VV  159 (446)
                                          ...    +.+.+++. ++.  +.++++|.++.... ..-.+++.+. .++..++.+|.||
T Consensus       179 --------------------~~~----~~~~l~~~~gv~--~~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~i~~D~vi  231 (300)
T TIGR01292       179 --------------------EKI----LLDRLRKNPNIE--FLWNSTVKEIVGDN-KVEGVKIKNTVTGEEEELKVDGVF  231 (300)
T ss_pred             --------------------CHH----HHHHHHhCCCeE--EEeccEEEEEEccC-cEEEEEEEecCCCceEEEEccEEE
Confidence                                012    22333444 776  88899999997643 2223444432 2344679999999


Q ss_pred             EccCCCCCCcc
Q 013303          160 VCNGHFSVPRL  170 (446)
Q Consensus       160 vAtG~~s~p~~  170 (446)
                      +|+|  ..|+.
T Consensus       232 ~a~G--~~~~~  240 (300)
T TIGR01292       232 IAIG--HEPNT  240 (300)
T ss_pred             EeeC--CCCCh
Confidence            9999  56654

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR02731 phytoene_desat phytoene desaturase

Probab=98.10  E-value=3.1e-06  Score=85.62  Aligned_cols=40  Identities=40%  Similarity=0.573  Sum_probs=37.4

Q ss_pred             eEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (446)
Q Consensus         4 ~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~   43 (446)
                      +|+|||||++||+||..|.+.|++|+|+|+.+.+||.+..
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s   40 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAA   40 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcce
Confidence            5899999999999999999999999999999999997653

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>TIGR02730 carot_isom carotene isomerase

Probab=98.08  E-value=4.1e-06  Score=85.65  Aligned_cols=42  Identities=38%  Similarity=0.480  Sum_probs=39.2

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT   44 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~   44 (446)
                      .||+|||||.+||++|..|++.|++|+|+|+++.+||.....
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~   42 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYF   42 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEe
Confidence            489999999999999999999999999999999999987653

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=98.07  E-value=4.4e-06  Score=76.80  Aligned_cols=43  Identities=26%  Similarity=0.447  Sum_probs=40.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT   44 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~   44 (446)
                      ++|++|||||.+|+..|..|++.|.+|.|+|+++++||.+...
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde   43 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDE   43 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccc
Confidence            5799999999999999999999999999999999999998753

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=98.07  E-value=1.8e-05  Score=82.18  Aligned_cols=33  Identities=24%  Similarity=0.503  Sum_probs=30.4

Q ss_pred             eEEEECcChHHHHHHHHHH----HCCCcEEEEeeCCC
Q 013303            4 HVAVIGAGAAGLVVGHELL----REGHTVVVYEKGEQ   36 (446)
Q Consensus         4 ~V~IIGaG~aGl~aA~~l~----~~g~~v~v~e~~~~   36 (446)
                      ||+|||||.|||+||..++    +.|.+|+|+||...
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~   37 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL   37 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence            7999999999999999998    67999999999764

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PLN02676 polyamine oxidase

Probab=98.07  E-value=4.2e-06  Score=85.01  Aligned_cols=43  Identities=23%  Similarity=0.486  Sum_probs=39.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCCCcCceeeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQVGGSWIYT   44 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~~~GG~w~~~   44 (446)
                      .+||+|||||++||+||+.|++.|. +|+|+|+++.+||.+...
T Consensus        26 ~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~   69 (487)
T PLN02676         26 SPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKA   69 (487)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceee
Confidence            4789999999999999999999998 699999999999988754

>PLN02529 lysine-specific histone demethylase 1

Probab=98.06  E-value=4.6e-06  Score=87.59  Aligned_cols=43  Identities=37%  Similarity=0.502  Sum_probs=39.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT   44 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~   44 (446)
                      .++|+|||||++||+||+.|++.|++|+|+|+++++||.....
T Consensus       160 ~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~  202 (738)
T PLN02529        160 EGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQ  202 (738)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeee
Confidence            4799999999999999999999999999999999999876543

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=98.02  E-value=1e-05  Score=78.20  Aligned_cols=42  Identities=24%  Similarity=0.269  Sum_probs=31.9

Q ss_pred             EEeCeEEEEEEEcCCCceEEEEEeCC-CceEEEEEcEEEEccC
Q 013303          122 VRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVVCNG  163 (446)
Q Consensus       122 i~~~~~V~~v~~~~~~~~~v~~~~~~-~~~~~~~~d~VVvAtG  163 (446)
                      ++.+++|++++..+++.|++++.+.. ++..++.+|.||+|||
T Consensus       296 l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilATG  338 (341)
T PF13434_consen  296 LLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILATG  338 (341)
T ss_dssp             EETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEEE---
T ss_pred             EeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcCC
Confidence            77799999999887569999999854 4667899999999999

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.01  E-value=1.2e-05  Score=82.23  Aligned_cols=37  Identities=32%  Similarity=0.362  Sum_probs=34.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG   38 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G   38 (446)
                      +.||+|||||.|||.||..+++.|++|+|+||....+
T Consensus         6 ~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r   42 (562)
T COG1053           6 EFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR   42 (562)
T ss_pred             cCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence            5799999999999999999999999999999987654

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.01  E-value=3e-05  Score=84.76  Aligned_cols=35  Identities=31%  Similarity=0.414  Sum_probs=32.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~   36 (446)
                      ..||+|||||.|||+||..+++.|.+|+|+||...
T Consensus        13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~   47 (897)
T PRK13800         13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV   47 (897)
T ss_pred             ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            46999999999999999999999999999999763

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=98.01  E-value=7.9e-05  Score=72.04  Aligned_cols=59  Identities=24%  Similarity=0.382  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       103 ~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      .++.+-+.++.+.+|++  ++|+++|..+...++....|.+.++.    ++.+|+||+|.|+.+.
T Consensus       173 ~~vvkni~~~l~~~G~e--i~f~t~VeDi~~~~~~~~~v~~~~g~----~i~~~~vvlA~Grsg~  231 (486)
T COG2509         173 PKVVKNIREYLESLGGE--IRFNTEVEDIEIEDNEVLGVKLTKGE----EIEADYVVLAPGRSGR  231 (486)
T ss_pred             HHHHHHHHHHHHhcCcE--EEeeeEEEEEEecCCceEEEEccCCc----EEecCEEEEccCcchH
Confidence            67888899999999988  99999999999876334566666654    8999999999998443

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=97.99  E-value=0.00012  Score=71.94  Aligned_cols=93  Identities=22%  Similarity=0.269  Sum_probs=67.2

Q ss_pred             CeEEEECcChHHHHHHHHHHH----CC--CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLR----EG--HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRE   76 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~----~g--~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~   76 (446)
                      ++|+|||||++|+.+|..|++    .|  .+|+++ ..+.+.                                      
T Consensus       146 ~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l--------------------------------------  186 (364)
T TIGR03169       146 KRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLL--------------------------------------  186 (364)
T ss_pred             ceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCccc--------------------------------------
Confidence            589999999999999999975    34  478888 322110                                      


Q ss_pred             CcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEc
Q 013303           77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD  156 (446)
Q Consensus        77 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d  156 (446)
                                          +.  ...++.+.+.+..++.+++  +..+++|..++.   +  .|.+.++.    ++.+|
T Consensus       187 --------------------~~--~~~~~~~~~~~~l~~~gV~--v~~~~~v~~i~~---~--~v~~~~g~----~i~~D  233 (364)
T TIGR03169       187 --------------------PG--FPAKVRRLVLRLLARRGIE--VHEGAPVTRGPD---G--ALILADGR----TLPAD  233 (364)
T ss_pred             --------------------cc--CCHHHHHHHHHHHHHCCCE--EEeCCeeEEEcC---C--eEEeCCCC----EEecC
Confidence                                00  0135667788888888988  899999998852   2  45554443    78999


Q ss_pred             EEEEccCCCCCCc
Q 013303          157 AVVVCNGHFSVPR  169 (446)
Q Consensus       157 ~VVvAtG~~s~p~  169 (446)
                      .||+|+|  ..|+
T Consensus       234 ~vi~a~G--~~p~  244 (364)
T TIGR03169       234 AILWATG--ARAP  244 (364)
T ss_pred             EEEEccC--CChh
Confidence            9999999  5554

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=97.98  E-value=8.5e-06  Score=79.68  Aligned_cols=37  Identities=38%  Similarity=0.524  Sum_probs=34.4

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV   37 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~   37 (446)
                      |++||+|||||++|+.+|..|++.|++|+|+|+.+..
T Consensus         1 ~~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~   37 (436)
T PRK05335          1 MMKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK   37 (436)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence            6789999999999999999999999999999987654

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=97.97  E-value=8.9e-06  Score=82.31  Aligned_cols=41  Identities=29%  Similarity=0.477  Sum_probs=37.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHC----CCcEEEEeeCCCcCceee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLRE----GHTVVVYEKGEQVGGSWI   42 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~----g~~v~v~e~~~~~GG~w~   42 (446)
                      +++|+|||||+|||+||..|.+.    |.+|+|+|+.+.+||...
T Consensus        22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~   66 (576)
T PRK13977         22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLD   66 (576)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCcc
Confidence            47999999999999999999996    679999999999999765

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.96  E-value=6.2e-05  Score=77.39  Aligned_cols=99  Identities=21%  Similarity=0.204  Sum_probs=70.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||..|+.+|..|+..+.+|+++++.+.+.    .                                      
T Consensus       351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~----~--------------------------------------  388 (517)
T PRK15317        351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK----A--------------------------------------  388 (517)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc----c--------------------------------------
Confidence            3689999999999999999999999999999865320    0                                      


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCCCcEEeCeEEEEEEEcCCCce-EEEEEeCC-CceEEEEEcEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKW-KVKSRKKD-DVVEEETFDAV  158 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~-~~l~~~i~~~~~V~~v~~~~~~~~-~v~~~~~~-~~~~~~~~d~V  158 (446)
                                              ..++.+.... .|+.  +++++.|.++...+ +.- .+++.+.. ++..++.+|.|
T Consensus       389 ------------------------~~~l~~~l~~~~gI~--i~~~~~v~~i~~~~-g~v~~v~~~~~~~g~~~~i~~D~v  441 (517)
T PRK15317        389 ------------------------DQVLQDKLRSLPNVT--IITNAQTTEVTGDG-DKVTGLTYKDRTTGEEHHLELEGV  441 (517)
T ss_pred             ------------------------cHHHHHHHhcCCCcE--EEECcEEEEEEcCC-CcEEEEEEEECCCCcEEEEEcCEE
Confidence                                    0123333333 4777  89999999998653 322 25555432 34457999999


Q ss_pred             EEccCCCCCCccC
Q 013303          159 VVCNGHFSVPRLA  171 (446)
Q Consensus       159 VvAtG~~s~p~~p  171 (446)
                      ++|+|  ..|+..
T Consensus       442 ~~~~G--~~p~~~  452 (517)
T PRK15317        442 FVQIG--LVPNTE  452 (517)
T ss_pred             EEeEC--CccCch
Confidence            99999  666654

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=97.95  E-value=1e-05  Score=82.11  Aligned_cols=40  Identities=43%  Similarity=0.652  Sum_probs=37.4

Q ss_pred             eEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (446)
Q Consensus         4 ~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~   43 (446)
                      +|+|||||++||++|..|.+.|++|+|||+++.+||....
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~   40 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGS   40 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeee
Confidence            5899999999999999999999999999999999997654

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=97.94  E-value=1.1e-05  Score=78.13  Aligned_cols=42  Identities=36%  Similarity=0.550  Sum_probs=39.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~   43 (446)
                      ..||+|||||.+||++|.+|.+.|++|+|+|.++++||....
T Consensus         7 ~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t   48 (450)
T COG1231           7 TADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLT   48 (450)
T ss_pred             CCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEE
Confidence            469999999999999999999999999999999999997654

>PLN02487 zeta-carotene desaturase

Probab=97.93  E-value=1.2e-05  Score=82.66  Aligned_cols=41  Identities=44%  Similarity=0.631  Sum_probs=38.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI   42 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~   42 (446)
                      +++|+|||||++||++|..|.+.|++|+|+|+.+.+||.+.
T Consensus        75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~  115 (569)
T PLN02487         75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVG  115 (569)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCcee
Confidence            35999999999999999999999999999999999998765

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.93  E-value=0.00015  Score=73.14  Aligned_cols=33  Identities=27%  Similarity=0.380  Sum_probs=31.0

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      ++|+|||||..|+-+|..|++.|.+|+++++..
T Consensus       273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~  305 (449)
T TIGR01316       273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT  305 (449)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence            689999999999999999999999999999864

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=97.91  E-value=1.1e-05  Score=85.20  Aligned_cols=43  Identities=42%  Similarity=0.544  Sum_probs=39.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT   44 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~   44 (446)
                      .++|+|||||++||+||+.|.+.|++|+|+|+++.+||.....
T Consensus       238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~  280 (808)
T PLN02328        238 PANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTM  280 (808)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCccccc
Confidence            4789999999999999999999999999999999999876543

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.84  E-value=0.00017  Score=70.37  Aligned_cols=33  Identities=24%  Similarity=0.326  Sum_probs=30.0

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCc-EEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHT-VVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~-v~v~e~~~   35 (446)
                      ++|+|||+|+.|+.+|..|++.|.+ |+|+++.+
T Consensus       173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~  206 (352)
T PRK12770        173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT  206 (352)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence            6899999999999999999999987 99999753

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=97.84  E-value=0.0002  Score=72.52  Aligned_cols=34  Identities=24%  Similarity=0.335  Sum_probs=30.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~   35 (446)
                      .++|+|||||..|+-+|..|++.|. +|+++++.+
T Consensus       273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~  307 (457)
T PRK11749        273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG  307 (457)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            3689999999999999999999998 899999853

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=97.83  E-value=0.00016  Score=70.42  Aligned_cols=105  Identities=21%  Similarity=0.220  Sum_probs=82.5

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d   82 (446)
                      ..|+++|+|..|+.+|..|...+.+|++|++.+.+     ..                                      
T Consensus       214 ~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~-----~~--------------------------------------  250 (478)
T KOG1336|consen  214 GKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWL-----LP--------------------------------------  250 (478)
T ss_pred             ceEEEECchHHHHHHHHHHHhcCceEEEEccCccc-----hh--------------------------------------
Confidence            47999999999999999999999999999997522     10                                      


Q ss_pred             CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCc-eEEEEEeCCCceEEEEEcEEEEc
Q 013303           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                    ..  -...+.+.+..|.++.++.  ++.++.+.+++-.++++ -.|.+.++.    ++.+|.||++
T Consensus       251 --------------~l--f~~~i~~~~~~y~e~kgVk--~~~~t~~s~l~~~~~Gev~~V~l~dg~----~l~adlvv~G  308 (478)
T KOG1336|consen  251 --------------RL--FGPSIGQFYEDYYENKGVK--FYLGTVVSSLEGNSDGEVSEVKLKDGK----TLEADLVVVG  308 (478)
T ss_pred             --------------hh--hhHHHHHHHHHHHHhcCeE--EEEecceeecccCCCCcEEEEEeccCC----EeccCeEEEe
Confidence                          00  1256778888888888888  89999999998766433 335555554    8999999999


Q ss_pred             cCCCCCCccCCCC
Q 013303          162 NGHFSVPRLAQVP  174 (446)
Q Consensus       162 tG~~s~p~~p~i~  174 (446)
                      +|  .+|+.+.+.
T Consensus       309 iG--~~p~t~~~~  319 (478)
T KOG1336|consen  309 IG--IKPNTSFLE  319 (478)
T ss_pred             ec--ccccccccc
Confidence            99  899988765

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=97.83  E-value=2.4e-05  Score=74.72  Aligned_cols=42  Identities=33%  Similarity=0.457  Sum_probs=36.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCc--EEEEeeCCCcCceeee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHT--VVVYEKGEQVGGSWIY   43 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~--v~v~e~~~~~GG~w~~   43 (446)
                      .++|+|+|||++||++|.+|++.+-+  |++||+.+++||-.+.
T Consensus        11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS   54 (491)
T KOG1276|consen   11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS   54 (491)
T ss_pred             cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeee
Confidence            57999999999999999999999765  5679999999985543

>PLN02612 phytoene desaturase

Probab=97.81  E-value=2.3e-05  Score=81.25  Aligned_cols=41  Identities=32%  Similarity=0.477  Sum_probs=38.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI   42 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~   42 (446)
                      .++|+|||||++||++|.+|.+.|++|+|+|+++.+||...
T Consensus        93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~  133 (567)
T PLN02612         93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVA  133 (567)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcce
Confidence            46899999999999999999999999999999999998654

>PRK12831 putative oxidoreductase; Provisional

Probab=97.78  E-value=0.00031  Score=71.10  Aligned_cols=33  Identities=27%  Similarity=0.442  Sum_probs=30.8

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      ++|+|||||..|+-+|..|.+.|.+|+++++..
T Consensus       282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~  314 (464)
T PRK12831        282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS  314 (464)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence            689999999999999999999999999998753

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=97.77  E-value=5.3e-05  Score=73.61  Aligned_cols=66  Identities=20%  Similarity=0.191  Sum_probs=52.2

Q ss_pred             CCCCC---CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCCCc
Q 013303           96 LRRYP---GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPR  169 (446)
Q Consensus        96 ~~~~~---~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~p~  169 (446)
                      .+.||   ...+|.+-|...+++.|+.  |+++++|+.|+  + +.|.+.+..+.   ..+.+|+||||||..+.|.
T Consensus        76 grvfP~S~~A~sVv~~L~~~l~~~gV~--i~~~~~V~~i~--~-~~~~v~~~~~~---~~~~a~~vIlAtGG~s~p~  144 (376)
T TIGR03862        76 GRVFPVEMKAAPLLRAWLKRLAEQGVQ--FHTRHRWIGWQ--G-GTLRFETPDGQ---STIEADAVVLALGGASWSQ  144 (376)
T ss_pred             CEECCCCCCHHHHHHHHHHHHHHCCCE--EEeCCEEEEEe--C-CcEEEEECCCc---eEEecCEEEEcCCCccccc
Confidence            46676   6789999999999999999  99999999993  2 45888774322   2589999999999755443

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.77  E-value=8.3e-05  Score=73.46  Aligned_cols=149  Identities=17%  Similarity=0.111  Sum_probs=75.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCc-c-CCccCce-eecCCCCCc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPV-H-SSLYKSL-RVNLPRELM   78 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~-~-~~~y~~l-~~~~~~~~~   78 (446)
                      .+||+|||||.||+.||.+.++.|.++.++-.+-.-=|.+.-++..+-.      .|..+ + --....+ -.......+
T Consensus         4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~------~KG~lvrEIDALGG~Mg~~~D~~~I   77 (621)
T COG0445           4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGP------GKGHLVREIDALGGLMGKAADKAGI   77 (621)
T ss_pred             CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCc------ccceeEEeehhccchHHHhhhhcCC
Confidence            3799999999999999999999999999987664433333333222210      00000 0 0000000 000001111


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCC-ceEEEEEeCCCceEEEEEc
Q 013303           79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESN-KWKVKSRKKDDVVEEETFD  156 (446)
Q Consensus        79 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~-~~~v~~~~~~~~~~~~~~d  156 (446)
                      .|.-..-...  +.-...+.-.....+.++++..++.. |+.   .+...|..+.-.++. .+-|.+..+.    .+.++
T Consensus        78 Q~r~LN~sKG--PAVra~RaQaDk~~Y~~~mk~~le~~~NL~---l~q~~v~dli~e~~~~v~GV~t~~G~----~~~a~  148 (621)
T COG0445          78 QFRMLNSSKG--PAVRAPRAQADKWLYRRAMKNELENQPNLH---LLQGEVEDLIVEEGQRVVGVVTADGP----EFHAK  148 (621)
T ss_pred             chhhccCCCc--chhcchhhhhhHHHHHHHHHHHHhcCCCce---ehHhhhHHHhhcCCCeEEEEEeCCCC----eeecC
Confidence            1110000000  00001122233444555555555543 343   456677776654422 3556666664    89999


Q ss_pred             EEEEccCCC
Q 013303          157 AVVVCNGHF  165 (446)
Q Consensus       157 ~VVvAtG~~  165 (446)
                      .||++||.|
T Consensus       149 aVVlTTGTF  157 (621)
T COG0445         149 AVVLTTGTF  157 (621)
T ss_pred             EEEEeeccc
Confidence            999999954

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=97.76  E-value=2.6e-05  Score=77.83  Aligned_cols=42  Identities=21%  Similarity=0.266  Sum_probs=39.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~   43 (446)
                      .+||+|||+|.+|+.+|..|++.|.+|+++|+++..||.|..
T Consensus         4 ~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as   45 (443)
T PTZ00363          4 TYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESAS   45 (443)
T ss_pred             cceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCccccc
Confidence            479999999999999999999999999999999999999874

>PLN02976 amine oxidase

Probab=97.74  E-value=3.5e-05  Score=84.64  Aligned_cols=43  Identities=35%  Similarity=0.604  Sum_probs=40.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT   44 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~   44 (446)
                      .++|+|||||++|+++|..|.+.|++|+|||+++.+||.|...
T Consensus       693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~  735 (1713)
T PLN02976        693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTD  735 (1713)
T ss_pred             CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeec
Confidence            4789999999999999999999999999999999999987654

>PLN03000 amine oxidase

Probab=97.73  E-value=3.6e-05  Score=81.62  Aligned_cols=43  Identities=33%  Similarity=0.516  Sum_probs=39.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT   44 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~   44 (446)
                      .++|+|||||++||++|..|.+.|++|+|+|+++++||.+...
T Consensus       184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~  226 (881)
T PLN03000        184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTK  226 (881)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCccee
Confidence            3789999999999999999999999999999999999977644

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=97.71  E-value=3.8e-05  Score=79.49  Aligned_cols=41  Identities=37%  Similarity=0.592  Sum_probs=37.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC--CcCceee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE--QVGGSWI   42 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~--~~GG~w~   42 (446)
                      ..||+|||+|.|||+||..+++.|.+|+|+|+.+  .+||...
T Consensus         4 ~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~   46 (549)
T PRK12834          4 DADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF   46 (549)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence            4799999999999999999999999999999998  6777544

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=97.68  E-value=0.00073  Score=61.53  Aligned_cols=182  Identities=17%  Similarity=0.225  Sum_probs=92.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCC------CcEEEEeeCCCcCce----------eeeCCCCCC-CCCCCCC----CCC-
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREG------HTVVVYEKGEQVGGS----------WIYTSETES-DPLGVDP----NRY-   59 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g------~~v~v~e~~~~~GG~----------w~~~~~~~~-~~~g~~p----~~~-   59 (446)
                      +++|+|||||+.|.++|..|++.+      +.|++||...-.||.          |....-+.. .+....-    +.. 
T Consensus        10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~Lsdey   89 (380)
T KOG2852|consen   10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEELSDEY   89 (380)
T ss_pred             ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHHHHhh
Confidence            479999999999999999999987      789999987765542          322110000 0000000    000 


Q ss_pred             -CccCCccCceeecCCCCC---cccCC----CCCC-----cCC-CCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEe
Q 013303           60 -PVHSSLYKSLRVNLPREL---MGFQA----YPFV-----ARN-YEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRL  124 (446)
Q Consensus        60 -~~~~~~y~~l~~~~~~~~---~~~~d----~~~~-----~~~-~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~  124 (446)
                       -...--|+.+.+-+-+.-   ..-..    ..|-     ... +-+..+.....+...+.+++..-+++- ++.  +.+
T Consensus        90 dGvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~V~--lv~  167 (380)
T KOG2852|consen   90 DGVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGGVK--LVF  167 (380)
T ss_pred             cCcccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCHHHHHHHHHHHHHhhcCeE--EEE
Confidence             001112333332111110   00000    0010     000 001222333456677777777766665 466  565


Q ss_pred             CeEEEEEEEcCCCceEEEEEeCC---CceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCC
Q 013303          125 HTEVLNARLVESNKWKVKSRKKD---DVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN  193 (446)
Q Consensus       125 ~~~V~~v~~~~~~~~~v~~~~~~---~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~  193 (446)
                      + +|..|..+   ..++......   +.......+.+|||.|.|+.-.+|.+ +   ..|.-+||-...-++
T Consensus       168 G-kv~ev~dE---k~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTskllp~~-r---IsglrihsI~l~~~e  231 (380)
T KOG2852|consen  168 G-KVKEVSDE---KHRINSVPKAEAEDTIIKADVHKIVVSAGPWTSKLLPFT-R---ISGLRIHSITLSPGE  231 (380)
T ss_pred             e-eeEEeecc---cccccccchhhhcCceEEeeeeEEEEecCCCchhhcccc-c---cceeeeeeEEecCCC
Confidence            4 77777622   2333333222   22456788999999998765555542 2   224456776655444

>TIGR02462 pyranose_ox pyranose oxidase

Probab=97.68  E-value=4.4e-05  Score=77.73  Aligned_cols=39  Identities=21%  Similarity=0.186  Sum_probs=37.1

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCcee
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW   41 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w   41 (446)
                      +||+|||+||+|+.+|+.|++.|++|++||+....||.|
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~   39 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLK   39 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCc
Confidence            589999999999999999999999999999999998877

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=97.67  E-value=8.3e-05  Score=71.00  Aligned_cols=34  Identities=24%  Similarity=0.218  Sum_probs=31.3

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      ..|+|||+|++|+=.|..+++.|.+|.++.+.+.
T Consensus         4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k   37 (408)
T COG2081           4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPK   37 (408)
T ss_pred             ceEEEECCCHHHHHHHHHHhhcCCEEEEEecCcc
Confidence            4799999999999999999999999999998764

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=97.64  E-value=0.00015  Score=69.40  Aligned_cols=101  Identities=22%  Similarity=0.358  Sum_probs=73.8

Q ss_pred             eEEEECcChHHHHHHHHHHHC--------------CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCce
Q 013303            4 HVAVIGAGAAGLVVGHELLRE--------------GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSL   69 (446)
Q Consensus         4 ~V~IIGaG~aGl~aA~~l~~~--------------g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l   69 (446)
                      .++||||||.|...|.+|+..              .++|+++|..+.+   .+                      ++   
T Consensus       220 h~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i---L~----------------------mF---  271 (491)
T KOG2495|consen  220 HFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI---LN----------------------MF---  271 (491)
T ss_pred             EEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH---HH----------------------HH---
Confidence            689999999999999999742              3589999987643   00                      00   


Q ss_pred             eecCCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCc
Q 013303           70 RVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV  149 (446)
Q Consensus        70 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~  149 (446)
                                                      .+.+.+|.++...+-++.  ++.++.|..|+.     -.+++..++|+
T Consensus       272 --------------------------------dkrl~~yae~~f~~~~I~--~~~~t~Vk~V~~-----~~I~~~~~~g~  312 (491)
T KOG2495|consen  272 --------------------------------DKRLVEYAENQFVRDGID--LDTGTMVKKVTE-----KTIHAKTKDGE  312 (491)
T ss_pred             --------------------------------HHHHHHHHHHHhhhccce--eecccEEEeecC-----cEEEEEcCCCc
Confidence                                            145666777666666777  888999999864     34666666666


Q ss_pred             eEEEEEcEEEEccCCCCCCccC
Q 013303          150 VEEETFDAVVVCNGHFSVPRLA  171 (446)
Q Consensus       150 ~~~~~~d~VVvAtG~~s~p~~p  171 (446)
                      ..++.|--+|-|||.-.+|.+-
T Consensus       313 ~~~iPYG~lVWatG~~~rp~~k  334 (491)
T KOG2495|consen  313 IEEIPYGLLVWATGNGPRPVIK  334 (491)
T ss_pred             eeeecceEEEecCCCCCchhhh
Confidence            7889999999999955555443

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=97.63  E-value=0.00037  Score=68.35  Aligned_cols=63  Identities=17%  Similarity=0.139  Sum_probs=42.4

Q ss_pred             CCHHHHHHHHHHHHHH-hCCCCcEEeCeEEEEEEEcCCCce-EEEEEeCCCceEEEEEcEEEEccCC
Q 013303          100 PGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKW-KVKSRKKDDVVEEETFDAVVVCNGH  164 (446)
Q Consensus       100 ~~~~~v~~yl~~~~~~-~~l~~~i~~~~~V~~v~~~~~~~~-~v~~~~~~~~~~~~~~d~VVvAtG~  164 (446)
                      .++.++...|.+.+++ -++.  +.-+..+.++-.+++... -|.+.+..++..++.++.||+|||.
T Consensus       130 ~TG~~I~~~L~~~v~~~p~I~--v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG  194 (518)
T COG0029         130 ATGKEIMTALLKKVRNRPNIT--VLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGG  194 (518)
T ss_pred             CccHHHHHHHHHHHhcCCCcE--EEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCC
Confidence            5779999999998876 4666  666777777665542122 2334333224567889999999995

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.62  E-value=0.00017  Score=73.55  Aligned_cols=34  Identities=32%  Similarity=0.507  Sum_probs=31.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .++|+|||+|.+|+++|..|++.|.+|+++|+.+
T Consensus        16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~   49 (480)
T PRK01438         16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD   49 (480)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4689999999999999999999999999999753

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.62  E-value=0.00039  Score=72.11  Aligned_cols=34  Identities=29%  Similarity=0.165  Sum_probs=31.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+
T Consensus       143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~  176 (555)
T TIGR03143       143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP  176 (555)
T ss_pred             CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence            3689999999999999999999999999999865

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.55  E-value=3e-05  Score=69.04  Aligned_cols=86  Identities=23%  Similarity=0.266  Sum_probs=57.8

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecCC-------------------ccccc-----cCC----CC-CCeeeccc
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-------------------DETHE-----KQP----GY-DNMWLHSM  249 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~-------------------~~~~~-----~~~----~~-~~v~~~~~  249 (446)
                      +|+|||+|+.|+.+|..|++.+.+|+++.+.+.                   .....     ++.    .. -.+.+...
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   80 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK   80 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence            589999999999999999999999999976552                   00000     111    11 13334566


Q ss_pred             eeEEccCCc------EE-----ecCCcEEeecEEEEecCccCCCCC
Q 013303          250 VERANEDGT------VV-----FRNGRVVSADVIMHCTGYKYNYPF  284 (446)
Q Consensus       250 v~~i~~~~~------v~-----~~dG~~~~~D~vi~atG~~~~~~~  284 (446)
                      +.++.....      +.     ..++.++.+|.||+|||..|..|.
T Consensus        81 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~  126 (201)
T PF07992_consen   81 VVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPN  126 (201)
T ss_dssp             EEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEES
T ss_pred             cccccccccccccCcccceeeccCCceEecCCeeeecCccccceee
Confidence            777754433      11     234566889999999999876443

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.55  E-value=0.00093  Score=71.94  Aligned_cols=33  Identities=24%  Similarity=0.394  Sum_probs=30.5

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCc-EEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHT-VVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~-v~v~e~~~   35 (446)
                      ++|+|||||..|+-+|..+.+.|.+ |+++++.+
T Consensus       571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~  604 (752)
T PRK12778        571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS  604 (752)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            6899999999999999999999987 99999854

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=97.51  E-value=0.00018  Score=69.91  Aligned_cols=30  Identities=20%  Similarity=0.265  Sum_probs=26.0

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEe
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASR  228 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r  228 (446)
                      .|+|||||..|+|.|..+++.|.+|.++..
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~   30 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITH   30 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEee
Confidence            489999999999999999999999999954

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=97.49  E-value=0.00019  Score=63.95  Aligned_cols=85  Identities=25%  Similarity=0.339  Sum_probs=48.6

Q ss_pred             EEEecCCcHHHHHHHHhccCCE-EEEEEecCCc----------------cccc---cCCC--------------------
Q 013303          201 ILIGHYASGLDIKRDLAGFAKE-VHIASRSVAD----------------ETHE---KQPG--------------------  240 (446)
Q Consensus       201 vVVG~G~sg~eia~~l~~~~~~-V~l~~r~~~~----------------~~~~---~~~~--------------------  240 (446)
                      +|||+|++|+-+|..|.+.|.+ |+++.+.+..                ..+.   .+..                    
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS   80 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence            6999999999999999999998 9999987530                0000   0000                    


Q ss_pred             ---------------CCCeeeccceeEEccCCc---EEecCCcEEeecEEEEecCc--cCCCCCC
Q 013303          241 ---------------YDNMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCTGY--KYNYPFL  285 (446)
Q Consensus       241 ---------------~~~v~~~~~v~~i~~~~~---v~~~dG~~~~~D~vi~atG~--~~~~~~l  285 (446)
                                     ..++.....|+++..++.   |.+.+|.++.+|.||+|||.  .|..|-+
T Consensus        81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~  145 (203)
T PF13738_consen   81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDI  145 (203)
T ss_dssp             HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-
T ss_pred             HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCcccc
Confidence                           002334556777765443   88888888999999999997  4555443

...

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.48  E-value=0.0014  Score=66.61  Aligned_cols=34  Identities=29%  Similarity=0.414  Sum_probs=28.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~   35 (446)
                      .++|+|||||..|+-+|..+++.|. +|++++...
T Consensus       281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~  315 (471)
T PRK12810        281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP  315 (471)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccC
Confidence            3689999999999999999999886 788776543

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=97.46  E-value=0.00057  Score=68.59  Aligned_cols=35  Identities=23%  Similarity=0.151  Sum_probs=31.2

Q ss_pred             CCEEEEEecCCcHHHHHHHHhccCCE-EEEEEecCC
Q 013303          197 DQVVILIGHYASGLDIKRDLAGFAKE-VHIASRSVA  231 (446)
Q Consensus       197 ~k~VvVVG~G~sg~eia~~l~~~~~~-V~l~~r~~~  231 (446)
                      ..+|+|||+|.||+=+|..|.+.+.. +.++.+...
T Consensus         8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~   43 (443)
T COG2072           8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDD   43 (443)
T ss_pred             cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCC
Confidence            35799999999999999999999888 999988753

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=97.45  E-value=0.00011  Score=69.97  Aligned_cols=35  Identities=34%  Similarity=0.572  Sum_probs=29.9

Q ss_pred             CeEEEECcChHHHHHHHHHHHCC-CcEEEEeeCCCc
Q 013303            3 RHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQV   37 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g-~~v~v~e~~~~~   37 (446)
                      +|++|||+|++|..+|..|++.+ .+|+|+|+....
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~   36 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRY   36 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSC
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccC
Confidence            59999999999999999999997 699999997654

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.45  E-value=0.0038  Score=63.34  Aligned_cols=34  Identities=21%  Similarity=0.326  Sum_probs=30.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~   35 (446)
                      .++|+|||+|..|+-+|..+.+.|. +|+|+++.+
T Consensus       282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~  316 (467)
T TIGR01318       282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD  316 (467)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence            3789999999999999999999995 799999864

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=97.43  E-value=0.0019  Score=70.75  Aligned_cols=33  Identities=24%  Similarity=0.362  Sum_probs=30.6

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      ++|+|||||..|+-+|..+.+.|.+|+++.+.+
T Consensus       448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~  480 (944)
T PRK12779        448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT  480 (944)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence            689999999999999999999999999998753

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.41  E-value=0.0014  Score=72.45  Aligned_cols=97  Identities=19%  Similarity=0.181  Sum_probs=68.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCccc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~   80 (446)
                      .++|+|||+|+.|+.+|..|++.|. .|+|+|..+.+                                           
T Consensus       317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~-------------------------------------------  353 (985)
T TIGR01372       317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV-------------------------------------------  353 (985)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch-------------------------------------------
Confidence            3689999999999999999999995 57888875311                                           


Q ss_pred             CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEE
Q 013303           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV  160 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVv  160 (446)
                                               ...+.+.+++.++.  ++.++.|..+...+ ..-.|++....++..++.+|.|++
T Consensus       354 -------------------------~~~l~~~L~~~GV~--i~~~~~v~~i~g~~-~v~~V~l~~~~g~~~~i~~D~V~v  405 (985)
T TIGR01372       354 -------------------------SPEARAEARELGIE--VLTGHVVAATEGGK-RVSGVAVARNGGAGQRLEADALAV  405 (985)
T ss_pred             -------------------------hHHHHHHHHHcCCE--EEcCCeEEEEecCC-cEEEEEEEecCCceEEEECCEEEE
Confidence                                     11133445667887  88999999987533 222344443223345799999999


Q ss_pred             ccCCCCCCccC
Q 013303          161 CNGHFSVPRLA  171 (446)
Q Consensus       161 AtG~~s~p~~p  171 (446)
                      +.|  ..|+..
T Consensus       406 a~G--~~Pnt~  414 (985)
T TIGR01372       406 SGG--WTPVVH  414 (985)
T ss_pred             cCC--cCchhH
Confidence            999  677653

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.40  E-value=0.00019  Score=66.44  Aligned_cols=35  Identities=37%  Similarity=0.633  Sum_probs=33.0

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      |..||+|||||.|||+++..|.+.|.+++|+.+..
T Consensus         1 M~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ   35 (421)
T COG3075           1 MNFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ   35 (421)
T ss_pred             CcccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence            78899999999999999999999999999998864

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.35  E-value=0.0064  Score=64.31  Aligned_cols=34  Identities=26%  Similarity=0.412  Sum_probs=30.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~   35 (446)
                      .++|+|||||..|+-+|..|++.|. +|+++.+..
T Consensus       323 gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~  357 (652)
T PRK12814        323 GKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT  357 (652)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            3789999999999999999999986 699998753

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=97.31  E-value=0.0026  Score=59.39  Aligned_cols=43  Identities=33%  Similarity=0.448  Sum_probs=35.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHC----CCcEEEEeeCCC---------cCceeeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLRE----GHTVVVYEKGEQ---------VGGSWIYT   44 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~----g~~v~v~e~~~~---------~GG~w~~~   44 (446)
                      ..+|+|||||-.|.+.|..|.++    |++|+|+|+.+.         +||.+...
T Consensus        86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQF  141 (509)
T KOG2853|consen   86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQF  141 (509)
T ss_pred             ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeec
Confidence            35899999999999999999764    799999999764         47776543

>PRK06847 hypothetical protein; Provisional

Probab=97.29  E-value=0.00061  Score=67.10  Aligned_cols=34  Identities=18%  Similarity=0.185  Sum_probs=31.5

Q ss_pred             CCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       197 ~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      .++|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~   37 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDP   37 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            4689999999999999999999999999999865

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.28  E-value=0.00027  Score=69.63  Aligned_cols=41  Identities=24%  Similarity=0.323  Sum_probs=36.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI   42 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~   42 (446)
                      ..||+|||||..|..+|.-.+-+|+++.++|+++...|+-.
T Consensus        67 ~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSS  107 (680)
T KOG0042|consen   67 EFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSS  107 (680)
T ss_pred             cccEEEECCCccCcceeehhhcccceeEEEecccccCCccc
Confidence            37999999999999999999999999999999886655543

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=97.28  E-value=0.00038  Score=64.18  Aligned_cols=88  Identities=19%  Similarity=0.288  Sum_probs=63.6

Q ss_pred             CEEEEEecCCcHHHHHHHHhcc-C-CEEEEEEecCC---c-------cccc----------cCCCCCCeeeccceeEEcc
Q 013303          198 QVVILIGHYASGLDIKRDLAGF-A-KEVHIASRSVA---D-------ETHE----------KQPGYDNMWLHSMVERANE  255 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~-~-~~V~l~~r~~~---~-------~~~~----------~~~~~~~v~~~~~v~~i~~  255 (446)
                      -.|+|||||.-|+-+|..+.+. + .+|-++.....   +       .-+.          .+...+..+++..|+++++
T Consensus        40 ~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~wi~ekv~~f~P  119 (446)
T KOG3851|consen   40 FKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGATWIKEKVKEFNP  119 (446)
T ss_pred             eEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCcHHHHHHHHhcCC
Confidence            4799999999999999999764 3 35777765542   0       0011          1112234556678888887


Q ss_pred             CCc-EEecCCcEEeecEEEEecCccCCCCCC
Q 013303          256 DGT-VVFRNGRVVSADVIMHCTGYKYNYPFL  285 (446)
Q Consensus       256 ~~~-v~~~dG~~~~~D~vi~atG~~~~~~~l  285 (446)
                      +.. |.+.+|++|.+|.+|+|+|..-++.-+
T Consensus       120 ~~N~v~t~gg~eIsYdylviA~Giql~y~~I  150 (446)
T KOG3851|consen  120 DKNTVVTRGGEEISYDYLVIAMGIQLDYGKI  150 (446)
T ss_pred             CcCeEEccCCcEEeeeeEeeeeeceeccchh
Confidence            644 999999999999999999999887654

>PRK06753 hypothetical protein; Provisional

Probab=97.26  E-value=0.00079  Score=66.23  Aligned_cols=33  Identities=21%  Similarity=0.269  Sum_probs=30.8

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      +|+|||||++|+-+|..|++.|.+|+++.+.+.
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~   34 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES   34 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            699999999999999999999999999998763

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.25  E-value=0.0041  Score=65.88  Aligned_cols=33  Identities=24%  Similarity=0.379  Sum_probs=29.5

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~   35 (446)
                      ++|+|||||..|+-+|..+.+.|. +|+++.+.+
T Consensus       469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~  502 (654)
T PRK12769        469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD  502 (654)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence            689999999999999999999996 699988754

>PLN02463 lycopene beta cyclase

Probab=97.23  E-value=0.00077  Score=67.61  Aligned_cols=33  Identities=15%  Similarity=0.224  Sum_probs=30.4

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      -.|+|||+|++|+-+|..|++.|.+|.++.+.+
T Consensus        29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~   61 (447)
T PLN02463         29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP   61 (447)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence            479999999999999999999999999998765

>PRK07236 hypothetical protein; Provisional

Probab=97.22  E-value=0.0011  Score=65.62  Aligned_cols=34  Identities=24%  Similarity=0.176  Sum_probs=31.9

Q ss_pred             CCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       197 ~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      ..+|+|||||.+|+-+|..|++.|.+|+++.+.+
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP   39 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            4789999999999999999999999999999875

>TIGR00292 thiazole biosynthesis enzyme

Probab=97.22  E-value=0.00068  Score=62.67  Aligned_cols=37  Identities=32%  Similarity=0.401  Sum_probs=32.7

Q ss_pred             CCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       195 ~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      +..-.|+|||+|++|+=.|..|++.+.+|.++.+...
T Consensus        19 ~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~   55 (254)
T TIGR00292        19 YAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLA   55 (254)
T ss_pred             hcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            3455799999999999999999999999999998753

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=97.21  E-value=0.00086  Score=67.74  Aligned_cols=61  Identities=15%  Similarity=0.074  Sum_probs=50.4

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCC
Q 013303           99 YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFS  166 (446)
Q Consensus        99 ~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s  166 (446)
                      .+...-+...|...|++.|..  |..++.|++|.-..++.|-|.+..+     .+++.++|-|+|.|+
T Consensus       183 ~~DP~~lC~ala~~A~~~GA~--viE~cpV~~i~~~~~~~~gVeT~~G-----~iet~~~VNaaGvWA  243 (856)
T KOG2844|consen  183 VMDPAGLCQALARAASALGAL--VIENCPVTGLHVETDKFGGVETPHG-----SIETECVVNAAGVWA  243 (856)
T ss_pred             ccCHHHHHHHHHHHHHhcCcE--EEecCCcceEEeecCCccceeccCc-----ceecceEEechhHHH
Confidence            344567778888899999988  9999999999877657787887776     599999999999765

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.19  E-value=0.0022  Score=63.91  Aligned_cols=35  Identities=29%  Similarity=0.337  Sum_probs=32.8

Q ss_pred             CCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       197 ~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      .++|+|||+|+||+-.|..|.+.|.+|+++.|++.
T Consensus         6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~   40 (448)
T KOG1399|consen    6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDD   40 (448)
T ss_pred             CCceEEECcchHHHHHHHHHHHCCCCceEEEecCC
Confidence            57899999999999999999999999999999874

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=97.15  E-value=0.00049  Score=74.51  Aligned_cols=37  Identities=24%  Similarity=0.177  Sum_probs=33.7

Q ss_pred             CCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       195 ~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      ..+|+|+|||+|++|+..|..|++.|.+|+++.+.+.
T Consensus       537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~  573 (1019)
T PRK09853        537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREEN  573 (1019)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccc
Confidence            4689999999999999999999999999999987653

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=97.14  E-value=0.00064  Score=58.99  Aligned_cols=41  Identities=29%  Similarity=0.586  Sum_probs=34.7

Q ss_pred             CeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCCCcC-ceeee
Q 013303            3 RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVG-GSWIY   43 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~G-G~w~~   43 (446)
                      .||+|||||.+||+||+.+..+  .++|.++|.+-.+| |.|.-
T Consensus        77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWLG  120 (328)
T KOG2960|consen   77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWLG  120 (328)
T ss_pred             cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccccc
Confidence            5899999999999999999854  68999999987765 46753

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=97.13  E-value=0.00031  Score=69.44  Aligned_cols=33  Identities=30%  Similarity=0.249  Sum_probs=26.0

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      +|+|||+|++|+=.|..+++.|.+|.++.+.+.
T Consensus         2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~   34 (409)
T PF03486_consen    2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKR   34 (409)
T ss_dssp             SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSS
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcc
Confidence            589999999999999999999999999999864

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK05868 hypothetical protein; Validated

Probab=97.08  E-value=0.0018  Score=63.69  Aligned_cols=34  Identities=18%  Similarity=0.208  Sum_probs=31.3

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      ++|+|||+|+.|+-+|..|++.|.+|+++.+.+.
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~   35 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG   35 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence            4799999999999999999999999999998763

>PRK02106 choline dehydrogenase; Validated

Probab=97.07  E-value=0.00058  Score=71.00  Aligned_cols=68  Identities=16%  Similarity=0.227  Sum_probs=44.5

Q ss_pred             HHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCc-eEEEEEeCCCceEEEEEcEEEEccCCCCCCccCCCCCCC
Q 013303          107 RYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGID  177 (446)
Q Consensus       107 ~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~~~~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~  177 (446)
                      .||....++-++.  |..++.|.+|..+. +. --|++.+..+....+.++.||+|.|....|.+....|+.
T Consensus       205 ~~l~~a~~~~nl~--i~~~a~V~rI~~~~-~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~SGIG  273 (560)
T PRK02106        205 AYLDPALKRPNLT--IVTHALTDRILFEG-KRAVGVEYERGGGRETARARREVILSAGAINSPQLLQLSGIG  273 (560)
T ss_pred             HhhccccCCCCcE--EEcCCEEEEEEEeC-CeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhhcCCC
Confidence            4454443344566  88899999997653 22 224444433334457899999999998888887665653

>PLN02852 ferredoxin-NADP+ reductase

Probab=97.07  E-value=0.00052  Score=69.28  Aligned_cols=36  Identities=19%  Similarity=0.184  Sum_probs=32.8

Q ss_pred             CCCEEEEEecCCcHHHHHHHHhc--cCCEEEEEEecCC
Q 013303          196 QDQVVILIGHYASGLDIKRDLAG--FAKEVHIASRSVA  231 (446)
Q Consensus       196 ~~k~VvVVG~G~sg~eia~~l~~--~~~~V~l~~r~~~  231 (446)
                      .+++|+|||+|++|+..|..|++  .+.+|+++.+.+.
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~   62 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPT   62 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCC
Confidence            56899999999999999999986  6899999999875

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=97.06  E-value=0.0018  Score=61.95  Aligned_cols=58  Identities=28%  Similarity=0.273  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCCCccC
Q 013303          105 VLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLA  171 (446)
Q Consensus       105 v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~p~~p  171 (446)
                      +.++-.+-+++-|+.  ++-|..|.++.+.. +...+.+.++.    ++..|.||+|+|  ..|+.-
T Consensus       395 ls~wt~ekir~~GV~--V~pna~v~sv~~~~-~nl~lkL~dG~----~l~tD~vVvavG--~ePN~e  452 (659)
T KOG1346|consen  395 LSQWTIEKIRKGGVD--VRPNAKVESVRKCC-KNLVLKLSDGS----ELRTDLVVVAVG--EEPNSE  452 (659)
T ss_pred             HHHHHHHHHHhcCce--eccchhhhhhhhhc-cceEEEecCCC----eeeeeeEEEEec--CCCchh
Confidence            344555566777887  89999999998876 66778888876    899999999999  777753

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=97.05  E-value=0.00078  Score=62.56  Aligned_cols=39  Identities=38%  Similarity=0.660  Sum_probs=34.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC--CcCce
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE--QVGGS   40 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~--~~GG~   40 (446)
                      ..||+|||||.|||.||.+|+..|.+|+|+|++.  .+||+
T Consensus         5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQ   45 (552)
T COG3573           5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQ   45 (552)
T ss_pred             cccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccce
Confidence            3689999999999999999999999999999764  46765

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=97.04  E-value=0.0027  Score=58.61  Aligned_cols=37  Identities=30%  Similarity=0.420  Sum_probs=33.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCCCcC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVG   38 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~G   38 (446)
                      .+|++|||||+.|++.|++|.-+  +++|.|+|+...++
T Consensus        48 ~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la   86 (453)
T KOG2665|consen   48 RYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA   86 (453)
T ss_pred             cccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence            47999999999999999999876  89999999987765

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=97.04  E-value=0.00088  Score=61.28  Aligned_cols=44  Identities=27%  Similarity=0.258  Sum_probs=33.5

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCC-------CcEEEEeeCCC-------cCceeeeC
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREG-------HTVVVYEKGEQ-------VGGSWIYT   44 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g-------~~v~v~e~~~~-------~GG~w~~~   44 (446)
                      ++.+|+|||+|..||++|..+++..       .+|++++....       ..|.|...
T Consensus         2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T~s~~~AGl~~p~   59 (342)
T KOG3923|consen    2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDTTSDVAAGLFRPD   59 (342)
T ss_pred             CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccccccccccceeecc
Confidence            3679999999999999999888843       47888875432       34667654

>PRK07588 hypothetical protein; Provisional

Probab=97.03  E-value=0.0017  Score=64.34  Aligned_cols=34  Identities=18%  Similarity=0.188  Sum_probs=30.8

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      .+|+|||+|++|+-+|..|++.|.+|+++.+.+.
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~   34 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE   34 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence            3799999999999999999999999999987653

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.03  E-value=0.011  Score=56.73  Aligned_cols=82  Identities=15%  Similarity=0.229  Sum_probs=53.1

Q ss_pred             EEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEEEEccCCCCCCccCC-CCCCC-----CCCccEEEeeecCCCCC
Q 013303          122 VRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFSVPRLAQ-VPGID-----SWPGKQMHSHNYRIPNP  194 (446)
Q Consensus       122 i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~VVvAtG~~s~p~~p~-i~G~~-----~~~g~~~hs~~~~~~~~  194 (446)
                      +.-+++|.+++...+|...+++... .++..+++.|.||+|||  -....|. +.|+.     .-.|...-..+|+...+
T Consensus       295 l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATG--Y~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~  372 (436)
T COG3486         295 LLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATG--YRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWD  372 (436)
T ss_pred             eccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecc--cccCCchhhhhHHHhhcccccCCeEecCceeeecC
Confidence            6668899999988766688888775 45778899999999999  4455553 34443     12344444555554332


Q ss_pred             CCC-CEEEEEec
Q 013303          195 FQD-QVVILIGH  205 (446)
Q Consensus       195 ~~~-k~VvVVG~  205 (446)
                      -.+ .+|-|.|+
T Consensus       373 ~~~~~~ifvqn~  384 (436)
T COG3486         373 GPGKGRIFVQNA  384 (436)
T ss_pred             CCCcceEEEecc
Confidence            122 35666554

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=97.02  E-value=0.0012  Score=67.69  Aligned_cols=34  Identities=29%  Similarity=0.275  Sum_probs=28.3

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      |+|+|||+|+||+-.|..|.+.|-+|+++.+++.
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~   35 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDD   35 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCC
Confidence            7999999999999999999999999999998764

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=97.01  E-value=0.0023  Score=64.65  Aligned_cols=34  Identities=21%  Similarity=0.290  Sum_probs=31.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .++|+|||+|.+|+-.|..|.+.+.+|+++.+..
T Consensus       204 gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~  237 (461)
T PLN02172        204 NEVVVVIGNFASGADISRDIAKVAKEVHIASRAS  237 (461)
T ss_pred             CCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence            4789999999999999999999999999998854

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=96.98  E-value=0.0023  Score=62.88  Aligned_cols=81  Identities=20%  Similarity=0.266  Sum_probs=58.7

Q ss_pred             EEEEEecCCcHHHHHHHHhcc--CCEEEEEEecCC----------c---c-----ccccC------------C-------
Q 013303          199 VVILIGHYASGLDIKRDLAGF--AKEVHIASRSVA----------D---E-----THEKQ------------P-------  239 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~--~~~V~l~~r~~~----------~---~-----~~~~~------------~-------  239 (446)
                      .|+|||+|.+|+.+|..|++.  +.+|.++.+.+.          .   .     .+..+            .       
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~   80 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK   80 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence            389999999999999999987  899999988762          0   0     00000            0       


Q ss_pred             ----------------C--CCCeeeccceeEEccCCcEEecCCcEEeecEEEEecCccC
Q 013303          240 ----------------G--YDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKY  280 (446)
Q Consensus       240 ----------------~--~~~v~~~~~v~~i~~~~~v~~~dG~~~~~D~vi~atG~~~  280 (446)
                                      +  ...+.....|.++..++ |+++||+++.+|.||.|.|..+
T Consensus        81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~~-v~l~dg~~~~A~~VI~A~G~~s  138 (370)
T TIGR01789        81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDADG-VDLAPGTRINARSVIDCRGFKP  138 (370)
T ss_pred             CCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCCE-EEECCCCEEEeeEEEECCCCCC
Confidence                            0  01244456677775544 8889999999999999999775

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=96.97  E-value=0.028  Score=57.29  Aligned_cols=34  Identities=32%  Similarity=0.369  Sum_probs=29.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~   35 (446)
                      .++|+|||||..|+-+|..+.+.|. +|+++|..+
T Consensus       283 gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~  317 (485)
T TIGR01317       283 GKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMP  317 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecC
Confidence            3689999999999999999888875 799998764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.97  E-value=0.0097  Score=56.46  Aligned_cols=97  Identities=18%  Similarity=0.169  Sum_probs=69.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||-+.+-.|..|.+.+-+|+++=|.+.+                                            
T Consensus       143 ~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~--------------------------------------------  178 (305)
T COG0492         143 GKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEF--------------------------------------------  178 (305)
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCccc--------------------------------------------
Confidence            469999999999999999999999999999886532                                            


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV  160 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVv  160 (446)
                                        -..+.+    .+-+++. ++.  +.+++.|..+.-++  .-.|...+..++...+.+|.|++
T Consensus       179 ------------------ra~~~~----~~~l~~~~~i~--~~~~~~i~ei~G~~--v~~v~l~~~~~~~~~~~~~gvf~  232 (305)
T COG0492         179 ------------------RAEEIL----VERLKKNVKIE--VLTNTVVKEILGDD--VEGVVLKNVKGEEKELPVDGVFI  232 (305)
T ss_pred             ------------------CcCHHH----HHHHHhcCCeE--EEeCCceeEEecCc--cceEEEEecCCceEEEEeceEEE
Confidence                              001222    3333332 555  88999999987432  23456665445566899999999


Q ss_pred             ccCCCCCCcc
Q 013303          161 CNGHFSVPRL  170 (446)
Q Consensus       161 AtG~~s~p~~  170 (446)
                      +.|  ..|+.
T Consensus       233 ~iG--~~p~~  240 (305)
T COG0492         233 AIG--HLPNT  240 (305)
T ss_pred             ecC--CCCch
Confidence            999  55554

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=96.94  E-value=0.0025  Score=55.94  Aligned_cols=43  Identities=26%  Similarity=0.284  Sum_probs=36.6

Q ss_pred             cCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          189 YRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       189 ~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      +.+..+|..-.|+|||+|+||+-.|..|++.+-+|.++.|+-.
T Consensus        22 ~~~l~~~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls   64 (262)
T COG1635          22 FEDLLDYLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLS   64 (262)
T ss_pred             HHHHHhhhhccEEEECcCcchHHHHHHHHhCCceEEEEEeecc
Confidence            4444456667899999999999999999999999999998753

>PRK08163 salicylate hydroxylase; Provisional

Probab=96.90  E-value=0.003  Score=62.63  Aligned_cols=35  Identities=20%  Similarity=0.247  Sum_probs=32.1

Q ss_pred             CCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       197 ~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++.+.+.
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~   38 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE   38 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence            46899999999999999999999999999998753

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=96.90  E-value=0.0034  Score=58.23  Aligned_cols=37  Identities=24%  Similarity=0.285  Sum_probs=32.5

Q ss_pred             CCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       194 ~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      ++..-.|+|||+|++|+-.|..|++.|.+|.++.+..
T Consensus        22 ~~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~   58 (257)
T PRK04176         22 DYLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKL   58 (257)
T ss_pred             HhccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Confidence            3344679999999999999999999999999999865

>PRK13984 putative oxidoreductase; Provisional

Probab=96.89  E-value=0.026  Score=59.39  Aligned_cols=31  Identities=26%  Similarity=0.381  Sum_probs=25.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC------cEEEEe
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH------TVVVYE   32 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~------~v~v~e   32 (446)
                      .++|+|||||..|+-+|..|++.+.      +|+++.
T Consensus       418 ~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~  454 (604)
T PRK13984        418 PRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS  454 (604)
T ss_pred             CCcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence            3689999999999999999998753      566653

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.88  E-value=0.0049  Score=60.06  Aligned_cols=33  Identities=27%  Similarity=0.357  Sum_probs=30.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG   34 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~   34 (446)
                      .+||+|||||-||..||.+.++.|.+.+++-.+
T Consensus        28 ~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~   60 (679)
T KOG2311|consen   28 TYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN   60 (679)
T ss_pred             cccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence            469999999999999999999999999888765

>PLN02661 Putative thiazole synthesis

Probab=96.87  E-value=0.0037  Score=59.90  Aligned_cols=46  Identities=22%  Similarity=0.264  Sum_probs=36.9

Q ss_pred             EeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhcc-CCEEEEEEecC
Q 013303          185 HSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGF-AKEVHIASRSV  230 (446)
Q Consensus       185 hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~-~~~V~l~~r~~  230 (446)
                      ....+.+-.++..-.|+|||+|.+|+-.|..|++. +.+|+++.+..
T Consensus        80 ~~~~~~~l~~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~  126 (357)
T PLN02661         80 TRRYMTDMITYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSV  126 (357)
T ss_pred             hHhHhhhhhhcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence            33445555556677899999999999999999975 78999999865

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.86  E-value=0.0043  Score=58.11  Aligned_cols=103  Identities=17%  Similarity=0.207  Sum_probs=78.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      +++++|||||..++..|--++-.|-++-+|=|.+.+   .+                                       
T Consensus       189 Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kv---LR---------------------------------------  226 (478)
T KOG0405|consen  189 PKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKV---LR---------------------------------------  226 (478)
T ss_pred             CceEEEEccceEEEEhhhHHhhcCCeeEEEEecchh---hc---------------------------------------
Confidence            689999999999999999999999999998886643   00                                       


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                      .|  .+.+.+.+.+..+..|++  ++-++.++.+.+..++...+.+..+.    ...+|.|+.|
T Consensus       227 ----------------~F--D~~i~~~v~~~~~~~gin--vh~~s~~~~v~K~~~g~~~~i~~~~~----i~~vd~llwA  282 (478)
T KOG0405|consen  227 ----------------GF--DEMISDLVTEHLEGRGIN--VHKNSSVTKVIKTDDGLELVITSHGT----IEDVDTLLWA  282 (478)
T ss_pred             ----------------ch--hHHHHHHHHHHhhhccee--ecccccceeeeecCCCceEEEEeccc----cccccEEEEE
Confidence                            00  145667777777777887  88899999998877565666665553    4559999999


Q ss_pred             cCCCCCCccCC
Q 013303          162 NGHFSVPRLAQ  172 (446)
Q Consensus       162 tG~~s~p~~p~  172 (446)
                      +|  -.|+...
T Consensus       283 iG--R~Pntk~  291 (478)
T KOG0405|consen  283 IG--RKPNTKG  291 (478)
T ss_pred             ec--CCCCccc
Confidence            99  6766554

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=96.86  E-value=0.003  Score=62.20  Aligned_cols=82  Identities=26%  Similarity=0.374  Sum_probs=59.0

Q ss_pred             EEEEecCCcHHHHHHHH--hccCCEEEEEEecCCc----c--------c---c---------------------------
Q 013303          200 VILIGHYASGLDIKRDL--AGFAKEVHIASRSVAD----E--------T---H---------------------------  235 (446)
Q Consensus       200 VvVVG~G~sg~eia~~l--~~~~~~V~l~~r~~~~----~--------~---~---------------------------  235 (446)
                      |+|||+|++|.-+|..|  ++.+.+|.++.+.+..    +        .   +                           
T Consensus         2 viIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~Y   81 (374)
T PF05834_consen    2 VIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYPY   81 (374)
T ss_pred             EEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccce
Confidence            89999999999999999  7789999999765420    0        0   0                           


Q ss_pred             -------------ccCCCCCCeeeccceeEEccCCc---EEecCCcEEeecEEEEecCccCC
Q 013303          236 -------------EKQPGYDNMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCTGYKYN  281 (446)
Q Consensus       236 -------------~~~~~~~~v~~~~~v~~i~~~~~---v~~~dG~~~~~D~vi~atG~~~~  281 (446)
                                   +++...+.+.+...|.++..++.   |+++||+++.++.||-|+|....
T Consensus        82 ~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~  143 (374)
T PF05834_consen   82 CMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP  143 (374)
T ss_pred             EEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence                         00111123444566777765543   67899999999999999997644

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=96.85  E-value=0.016  Score=63.43  Aligned_cols=34  Identities=29%  Similarity=0.432  Sum_probs=29.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHC-CC-cEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLRE-GH-TVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~-g~-~v~v~e~~~   35 (446)
                      .++|+|||||..|+-+|..+.+. |. +|+++.+..
T Consensus       666 GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~  701 (1012)
T TIGR03315       666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT  701 (1012)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence            47899999999999999999886 75 799998854

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.83  E-value=0.017  Score=61.03  Aligned_cols=34  Identities=18%  Similarity=0.230  Sum_probs=29.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~   35 (446)
                      .++|+|||+|..|+-+|..+.+.|. +|+++.+.+
T Consensus       451 gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~  485 (639)
T PRK12809        451 GKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRD  485 (639)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            3789999999999999999999985 799998753

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=96.82  E-value=0.015  Score=64.45  Aligned_cols=33  Identities=27%  Similarity=0.230  Sum_probs=28.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCc-EEEEeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHT-VVVYEKG   34 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~-v~v~e~~   34 (446)
                      .++|+|||||..|+-+|..+.+.|.+ |+++.+.
T Consensus       571 Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr  604 (1006)
T PRK12775        571 GKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRR  604 (1006)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeec
Confidence            37899999999999999999999975 7777654

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=96.81  E-value=0.0033  Score=62.79  Aligned_cols=33  Identities=21%  Similarity=0.294  Sum_probs=30.0

Q ss_pred             EEEEEecCCcHHHHHHHHhccC-CEEEEEEecCC
Q 013303          199 VVILIGHYASGLDIKRDLAGFA-KEVHIASRSVA  231 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~-~~V~l~~r~~~  231 (446)
                      +|+|||+|..|+-+|..|++.| .+|+++.+.+.
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~   35 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA   35 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence            7999999999999999999988 49999998754

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.80  E-value=0.00095  Score=68.08  Aligned_cols=79  Identities=15%  Similarity=0.222  Sum_probs=52.6

Q ss_pred             CCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc---cccccCCCCCCeeeccceeEEccCCcEEecCCcEEeecE
Q 013303          195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD---ETHEKQPGYDNMWLHSMVERANEDGTVVFRNGRVVSADV  271 (446)
Q Consensus       195 ~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~---~~~~~~~~~~~v~~~~~v~~i~~~~~v~~~dG~~~~~D~  271 (446)
                      +.+++|+|||+|.+|+++|..|++.|.+|+++.+++..   .....+.+.+ +      .-..+.. +.    ....+|.
T Consensus        14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~g-v------~~~~~~~-~~----~~~~~D~   81 (480)
T PRK01438         14 WQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALG-A------TVRLGPG-PT----LPEDTDL   81 (480)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcC-C------EEEECCC-cc----ccCCCCE
Confidence            46789999999999999999999999999999866531   0001111111 1      1111110 10    1245899


Q ss_pred             EEEecCccCCCCCC
Q 013303          272 IMHCTGYKYNYPFL  285 (446)
Q Consensus       272 vi~atG~~~~~~~l  285 (446)
                      ||.++|..|+.|++
T Consensus        82 Vv~s~Gi~~~~~~~   95 (480)
T PRK01438         82 VVTSPGWRPDAPLL   95 (480)
T ss_pred             EEECCCcCCCCHHH
Confidence            99999999999874

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=96.78  E-value=0.0016  Score=64.07  Aligned_cols=33  Identities=30%  Similarity=0.519  Sum_probs=31.1

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      +||+|||||++|+++|..|.+.|++|+|+|+..
T Consensus         1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~   33 (419)
T TIGR03378         1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ   33 (419)
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            589999999999999999999999999999864

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>TIGR01810 betA choline dehydrogenase

Probab=96.77  E-value=0.0011  Score=68.53  Aligned_cols=69  Identities=22%  Similarity=0.301  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCc-eEEEEEeCCCceEEEEEcEEEEccCCCCCCccCCCCCC
Q 013303          105 VLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGI  176 (446)
Q Consensus       105 v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~~~~~~~~~~~d~VVvAtG~~s~p~~p~i~G~  176 (446)
                      ...|+....++-|++  |..++.|.+|..++ ++ .-|.+....+......++.||+|.|....|.+....|+
T Consensus       196 ~~~~l~~a~~r~nl~--i~~~~~V~rI~~~~-~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~SGI  265 (532)
T TIGR01810       196 ARAYLHPAMKRPNLE--VQTRAFVTKINFEG-NRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQLSGI  265 (532)
T ss_pred             HHHHhhhhccCCCeE--EEeCCEEEEEEecC-CeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHhcCC
Confidence            445666644455676  89999999998754 32 23444443222334689999999999888888766565

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=96.74  E-value=0.0015  Score=58.68  Aligned_cols=83  Identities=22%  Similarity=0.251  Sum_probs=54.4

Q ss_pred             EEEEecCCcHHHHHHHHhcc--CCEEEEEEecCCc----------cccccCC-CCCCe--------eeccceeEEcc-CC
Q 013303          200 VILIGHYASGLDIKRDLAGF--AKEVHIASRSVAD----------ETHEKQP-GYDNM--------WLHSMVERANE-DG  257 (446)
Q Consensus       200 VvVVG~G~sg~eia~~l~~~--~~~V~l~~r~~~~----------~~~~~~~-~~~~v--------~~~~~v~~i~~-~~  257 (446)
                      .+|||||..|+-+|.+|+..  ..+|.+++-++--          ..+.+.. +..+.        .+...|..+.. +.
T Consensus         2 fivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~~ylekfdv~eq~~~elg~~f~~~~~~v~~~~s~eh   81 (334)
T KOG2755|consen    2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIGQYLEKFDVKEQNCHELGPDFRRFLNDVVTWDSSEH   81 (334)
T ss_pred             eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHHHHHHhcCccccchhhhcccHHHHHHhhhhhccccc
Confidence            58999999999999999976  4578888776641          1111110 00000        01112333332 23


Q ss_pred             cEEecCCcEEeecEEEEecCccCCC
Q 013303          258 TVVFRNGRVVSADVIMHCTGYKYNY  282 (446)
Q Consensus       258 ~v~~~dG~~~~~D~vi~atG~~~~~  282 (446)
                      -+++++|..+.++.+++||||+|.+
T Consensus        82 ci~t~~g~~~ky~kKOG~tg~kPkl  106 (334)
T KOG2755|consen   82 CIHTQNGEKLKYFKLCLCTGYKPKL  106 (334)
T ss_pred             eEEecCCceeeEEEEEEecCCCcce
Confidence            3999999999999999999999975

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=96.73  E-value=0.0039  Score=61.84  Aligned_cols=33  Identities=15%  Similarity=0.149  Sum_probs=30.6

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      .+|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus         7 ~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~   39 (392)
T PRK08773          7 RDAVIVGGGVVGAACALALADAGLSVALVEGRE   39 (392)
T ss_pred             CCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence            469999999999999999999999999999864

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=96.72  E-value=0.034  Score=57.98  Aligned_cols=33  Identities=24%  Similarity=0.348  Sum_probs=28.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCC-CcEEEEeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREG-HTVVVYEKG   34 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g-~~v~v~e~~   34 (446)
                      .++|+|||+|..|+-++..+.+.| .+|+|+.+.
T Consensus       267 gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~  300 (564)
T PRK12771        267 GKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRR  300 (564)
T ss_pred             CCCEEEECChHHHHHHHHHHHHcCCCEEEEEEec
Confidence            468999999999999999999888 568888775

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=96.70  E-value=0.0015  Score=63.25  Aligned_cols=43  Identities=33%  Similarity=0.487  Sum_probs=38.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT   44 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~   44 (446)
                      .+|++|||+|..||++|..|++.|.+|+++|++...||--.+.
T Consensus        14 ~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaavte   56 (561)
T KOG4254|consen   14 EYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAVTE   56 (561)
T ss_pred             ccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCcceeee
Confidence            4799999999999999999999999999999998888765543

>PRK06834 hypothetical protein; Provisional

Probab=96.64  E-value=0.0053  Score=62.60  Aligned_cols=33  Identities=27%  Similarity=0.358  Sum_probs=30.8

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      ..|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus         4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~   36 (488)
T PRK06834          4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRP   36 (488)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            579999999999999999999999999999865

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=96.62  E-value=0.0048  Score=61.05  Aligned_cols=32  Identities=25%  Similarity=0.264  Sum_probs=29.5

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      .|+|||+|++|+-+|..|++.|.+|.++.+.+
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~   32 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHP   32 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Confidence            38999999999999999999999999999765

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.61  E-value=0.0017  Score=57.91  Aligned_cols=79  Identities=11%  Similarity=0.128  Sum_probs=50.9

Q ss_pred             CCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCccccccCCCCCCeeeccceeEEccCCcEEecCCcEEeecEEEE
Q 013303          195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMH  274 (446)
Q Consensus       195 ~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~~~~~~~~~~~~v~~~~~v~~i~~~~~v~~~dG~~~~~D~vi~  274 (446)
                      +.|++|+|||||.+|.--+..|.+.|.+|+++.....+ .+..+.+.++      |+-+..+    +..+..-.+|.||.
T Consensus         7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~-~l~~l~~~~~------i~~~~~~----~~~~dl~~~~lVi~   75 (205)
T TIGR01470         7 LEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELES-ELTLLAEQGG------ITWLARC----FDADILEGAFLVIA   75 (205)
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCH-HHHHHHHcCC------EEEEeCC----CCHHHhCCcEEEEE
Confidence            57899999999999999999999999999999765431 1222221112      2222111    01111124899999


Q ss_pred             ecCcc-CCCCC
Q 013303          275 CTGYK-YNYPF  284 (446)
Q Consensus       275 atG~~-~~~~~  284 (446)
                      |||-. .|.+.
T Consensus        76 at~d~~ln~~i   86 (205)
T TIGR01470        76 ATDDEELNRRV   86 (205)
T ss_pred             CCCCHHHHHHH
Confidence            99986 55443

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=96.60  E-value=0.0044  Score=63.80  Aligned_cols=32  Identities=16%  Similarity=0.201  Sum_probs=30.1

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRS  229 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~  229 (446)
                      -.|+|||||+.|++.|..+++.|.+|.++.+.
T Consensus         5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~   36 (618)
T PRK05192          5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHN   36 (618)
T ss_pred             ceEEEECchHHHHHHHHHHHHcCCcEEEEecc
Confidence            36999999999999999999999999999887

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.60  E-value=0.0035  Score=63.35  Aligned_cols=33  Identities=30%  Similarity=0.508  Sum_probs=31.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG   34 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~   34 (446)
                      .++|+|||+|.+|+++|+.|++.|.+|+++|+.
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~   37 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEK   37 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            478999999999999999999999999999985

>PRK09126 hypothetical protein; Provisional

Probab=96.59  E-value=0.0049  Score=61.05  Aligned_cols=33  Identities=27%  Similarity=0.473  Sum_probs=30.5

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      -+|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus         4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~   36 (392)
T PRK09126          4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQP   36 (392)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            469999999999999999999999999999864

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=96.58  E-value=0.012  Score=56.65  Aligned_cols=33  Identities=24%  Similarity=0.489  Sum_probs=29.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHC----CCcEEEEeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLRE----GHTVVVYEKG   34 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~----g~~v~v~e~~   34 (446)
                      .+||+|+||||.|++.|..|...    .++|.++|..
T Consensus        36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~   72 (481)
T KOG3855|consen   36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG   72 (481)
T ss_pred             cCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence            47999999999999999999864    3689999987

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=96.54  E-value=0.0063  Score=60.20  Aligned_cols=32  Identities=25%  Similarity=0.338  Sum_probs=30.8

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRS  229 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~  229 (446)
                      ..|+|||+|++|+=+|..|++.|.+|+++.+.
T Consensus         3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~   34 (387)
T COG0654           3 LDVAIVGAGPAGLALALALARAGLDVTLLERA   34 (387)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence            57999999999999999999999999999998

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=96.52  E-value=0.0022  Score=66.07  Aligned_cols=34  Identities=32%  Similarity=0.519  Sum_probs=32.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .+|++|||+|.+|..+|..|++.|.+|+|+|+..
T Consensus         7 ~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~   40 (542)
T COG2303           7 EYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG   40 (542)
T ss_pred             CCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence            5799999999999999999998899999999984

>PTZ00188 adrenodoxin reductase; Provisional

Probab=96.47  E-value=0.0025  Score=63.74  Aligned_cols=36  Identities=22%  Similarity=0.076  Sum_probs=32.0

Q ss_pred             CCCEEEEEecCCcHHHHHHHHh-ccCCEEEEEEecCC
Q 013303          196 QDQVVILIGHYASGLDIKRDLA-GFAKEVHIASRSVA  231 (446)
Q Consensus       196 ~~k~VvVVG~G~sg~eia~~l~-~~~~~V~l~~r~~~  231 (446)
                      .+++|+|||+|++|+..|..|+ +.+.+|+++.+.+.
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~   74 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPN   74 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence            5689999999999999999765 56899999999876

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=96.45  E-value=0.0074  Score=60.01  Aligned_cols=32  Identities=22%  Similarity=0.206  Sum_probs=29.2

Q ss_pred             EEEEEecCCcHHHHHHHHhccC--CEEEEEEecC
Q 013303          199 VVILIGHYASGLDIKRDLAGFA--KEVHIASRSV  230 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~--~~V~l~~r~~  230 (446)
                      .|+|||+|++|+-+|..|++.|  .+|+++.+.+
T Consensus         3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~   36 (403)
T PRK07333          3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAP   36 (403)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence            5999999999999999999985  8999999864

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=96.45  E-value=0.0077  Score=59.38  Aligned_cols=32  Identities=16%  Similarity=0.259  Sum_probs=30.0

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      .|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~   32 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATP   32 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence            38999999999999999999999999999875

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=96.38  E-value=0.0042  Score=66.87  Aligned_cols=36  Identities=11%  Similarity=0.099  Sum_probs=33.3

Q ss_pred             CCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303          194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS  229 (446)
Q Consensus       194 ~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~  229 (446)
                      ...+|+|+|||+|+.|+.+|..|++.|.+|+++.+.
T Consensus       380 ~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~  415 (1028)
T PRK06567        380 EPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL  415 (1028)
T ss_pred             CCCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence            347899999999999999999999999999999875

>PLN02697 lycopene epsilon cyclase

Probab=96.37  E-value=0.0064  Score=62.21  Aligned_cols=32  Identities=19%  Similarity=0.295  Sum_probs=29.4

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRS  229 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~  229 (446)
                      -.|+|||+|++|+-+|..|++.|.+|.++.+.
T Consensus       109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~  140 (529)
T PLN02697        109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPD  140 (529)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEecCc
Confidence            47999999999999999999999999999764

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=96.36  E-value=0.0099  Score=58.79  Aligned_cols=33  Identities=21%  Similarity=0.221  Sum_probs=30.7

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      .+|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus         8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~   40 (388)
T PRK07494          8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEP   40 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCC
Confidence            369999999999999999999999999999864

>PRK07045 putative monooxygenase; Reviewed

Probab=96.35  E-value=0.011  Score=58.43  Aligned_cols=34  Identities=18%  Similarity=0.261  Sum_probs=31.1

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      .+|+|||+|++|+-+|..|++.|.+|+++.+.+.
T Consensus         6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~   39 (388)
T PRK07045          6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAAR   39 (388)
T ss_pred             eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCc
Confidence            4799999999999999999999999999997663

>PRK06184 hypothetical protein; Provisional

Probab=96.33  E-value=0.0098  Score=61.05  Aligned_cols=33  Identities=18%  Similarity=0.327  Sum_probs=31.0

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      -.|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus         4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~   36 (502)
T PRK06184          4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAP   36 (502)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            479999999999999999999999999999865

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=96.32  E-value=0.0091  Score=59.45  Aligned_cols=32  Identities=19%  Similarity=0.237  Sum_probs=30.0

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      .|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus         4 dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~   35 (405)
T PRK05714          4 DLLIVGAGMVGSALALALQGSGLEVLLLDGGP   35 (405)
T ss_pred             cEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            69999999999999999999999999999764

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=96.30  E-value=0.034  Score=55.30  Aligned_cols=58  Identities=14%  Similarity=0.070  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCC
Q 013303          103 EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGH  164 (446)
Q Consensus       103 ~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~  164 (446)
                      .++.+.+.+..++.|+.  +..+++|.+++..+ +...+... ..+....+.+|.||+|||.
T Consensus       259 ~rL~~aL~~~l~~~Gv~--I~~g~~V~~v~~~~-~~V~~v~~-~~g~~~~i~AD~VVLAtGr  316 (422)
T PRK05329        259 LRLQNALRRAFERLGGR--IMPGDEVLGAEFEG-GRVTAVWT-RNHGDIPLRARHFVLATGS  316 (422)
T ss_pred             HHHHHHHHHHHHhCCCE--EEeCCEEEEEEEeC-CEEEEEEe-eCCceEEEECCEEEEeCCC
Confidence            36777788888888887  99999999998765 43333222 2233457899999999994

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=96.27  E-value=0.011  Score=58.32  Aligned_cols=32  Identities=19%  Similarity=0.313  Sum_probs=29.6

Q ss_pred             EEEEEecCCcHHHHHHHHhccC-CEEEEEEecC
Q 013303          199 VVILIGHYASGLDIKRDLAGFA-KEVHIASRSV  230 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~-~~V~l~~r~~  230 (446)
                      .|+|||+|++|+-+|..|++.| .+|+++.+.+
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~   33 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANS   33 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCC
Confidence            3899999999999999999999 9999998864

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=96.27  E-value=0.011  Score=58.79  Aligned_cols=32  Identities=19%  Similarity=0.193  Sum_probs=30.0

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRS  229 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~  229 (446)
                      .+|+|||+|++|+-+|..|++.|.+|+++.+.
T Consensus         5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~   36 (405)
T PRK08850          5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQ   36 (405)
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence            47999999999999999999999999999985

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=96.26  E-value=0.011  Score=58.33  Aligned_cols=32  Identities=13%  Similarity=0.132  Sum_probs=29.9

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      +|+|||+|+.|.-+|..|++.|.+|+++.+.+
T Consensus         5 dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~   36 (384)
T PRK08849          5 DIAVVGGGMVGAATALGFAKQGRSVAVIEGGE   36 (384)
T ss_pred             cEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            69999999999999999999999999999754

>PLN02785 Protein HOTHEAD

Probab=96.25  E-value=0.0047  Score=64.24  Aligned_cols=34  Identities=26%  Similarity=0.443  Sum_probs=31.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~   36 (446)
                      .+|++|||||.||+.+|..|++ +.+|+|+|++..
T Consensus        55 ~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~   88 (587)
T PLN02785         55 AYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV   88 (587)
T ss_pred             cCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence            4799999999999999999998 689999999863

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=96.25  E-value=0.0094  Score=56.25  Aligned_cols=32  Identities=19%  Similarity=0.225  Sum_probs=30.0

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      .|+|||+|++|+-+|..|++.|.+|+++.+..
T Consensus         2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~   33 (295)
T TIGR02032         2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKS   33 (295)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            48999999999999999999999999999875

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.23  E-value=0.012  Score=55.09  Aligned_cols=103  Identities=19%  Similarity=0.238  Sum_probs=78.2

Q ss_pred             eEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCCC
Q 013303            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAY   83 (446)
Q Consensus         4 ~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d~   83 (446)
                      +-+|||||..+|.+|-.|+-.|++|+|.-|+--+                                              
T Consensus       200 kTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~L----------------------------------------------  233 (503)
T KOG4716|consen  200 KTLVVGAGYVALECAGFLKGFGYDVTVMVRSILL----------------------------------------------  233 (503)
T ss_pred             ceEEEccceeeeehhhhHhhcCCCcEEEEEEeec----------------------------------------------
Confidence            5689999999999999999999999998884211                                              


Q ss_pred             CCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCC-CceEEEEEcEEEEcc
Q 013303           84 PFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVVCN  162 (446)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~-~~~~~~~~d~VVvAt  162 (446)
                                   +.|  .+++.+.+.+..+..|+.  +.-.+...+|++.+++...|...+.. ++.-+..||.|+.|.
T Consensus       234 -------------rGF--Dqdmae~v~~~m~~~Gik--f~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~Ai  296 (503)
T KOG4716|consen  234 -------------RGF--DQDMAELVAEHMEERGIK--FLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAI  296 (503)
T ss_pred             -------------ccc--cHHHHHHHHHHHHHhCCc--eeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhh
Confidence                         000  168888999999999987  66566778888777677777766543 244567899999999


Q ss_pred             CCCCCCccC
Q 013303          163 GHFSVPRLA  171 (446)
Q Consensus       163 G~~s~p~~p  171 (446)
                      |  ..+..-
T Consensus       297 G--R~~~~~  303 (503)
T KOG4716|consen  297 G--RKALTD  303 (503)
T ss_pred             c--cccchh
Confidence            9  455443

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.23  E-value=0.0056  Score=52.21  Aligned_cols=32  Identities=38%  Similarity=0.627  Sum_probs=30.4

Q ss_pred             eEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         4 ~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      +|+|||||..|.++|..|++.|++|+++.+.+
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            69999999999999999999999999999875

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=96.21  E-value=0.015  Score=49.56  Aligned_cols=30  Identities=30%  Similarity=0.310  Sum_probs=25.0

Q ss_pred             EEEecCCcHHHHHHHHhccC-----CEEEEEEecC
Q 013303          201 ILIGHYASGLDIKRDLAGFA-----KEVHIASRSV  230 (446)
Q Consensus       201 vVVG~G~sg~eia~~l~~~~-----~~V~l~~r~~  230 (446)
                      +|||+|++|+-++..|.+..     .+|+++.+.+
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~   35 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP   35 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence            58999999999999998773     4688888754

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=96.19  E-value=0.015  Score=57.46  Aligned_cols=33  Identities=18%  Similarity=0.197  Sum_probs=30.4

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      .|+|||+|++|+-+|..|++.|.+|+++.+.+.
T Consensus         7 dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~   39 (388)
T PRK07608          7 DVVVVGGGLVGASLALALAQSGLRVALLAPRAP   39 (388)
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence            699999999999999999999999999997643

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=96.16  E-value=0.015  Score=58.13  Aligned_cols=33  Identities=15%  Similarity=0.178  Sum_probs=30.8

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      .+|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus        19 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   51 (415)
T PRK07364         19 YDVAIVGGGIVGLTLAAALKDSGLRIALIEAQP   51 (415)
T ss_pred             cCEEEECcCHHHHHHHHHHhcCCCEEEEEecCC
Confidence            579999999999999999999999999999865

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=96.04  E-value=0.0097  Score=59.32  Aligned_cols=33  Identities=18%  Similarity=0.227  Sum_probs=30.0

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      -.|+|||+|..|+|.|...++.|.++.+++...
T Consensus         5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~   37 (621)
T COG0445           5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNL   37 (621)
T ss_pred             CceEEECCCccchHHHHhhhccCCeEEEEEcCC
Confidence            369999999999999999999999999888654

>PRK07190 hypothetical protein; Provisional

Probab=96.00  E-value=0.015  Score=59.26  Aligned_cols=34  Identities=21%  Similarity=0.065  Sum_probs=31.0

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      ..|+|||+|++|+=+|..|++.|.+|.++.+.+.
T Consensus         6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~   39 (487)
T PRK07190          6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDG   39 (487)
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence            4699999999999999999999999999998753

>PRK09897 hypothetical protein; Provisional

Probab=95.99  E-value=0.017  Score=59.26  Aligned_cols=33  Identities=12%  Similarity=0.158  Sum_probs=28.4

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCC--EEEEEEecC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAK--EVHIASRSV  230 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~--~V~l~~r~~  230 (446)
                      ++|+|||+|++|+-+|..|++.+.  +|+++.++.
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~   36 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQAD   36 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence            589999999999999999987654  799998854

>PRK08013 oxidoreductase; Provisional

Probab=95.98  E-value=0.021  Score=56.77  Aligned_cols=33  Identities=24%  Similarity=0.308  Sum_probs=30.6

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      ..|+|||+|++|.-+|..|++.|.+|+++.+.+
T Consensus         4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~   36 (400)
T PRK08013          4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRV   36 (400)
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCC
Confidence            469999999999999999999999999999764

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=95.98  E-value=0.023  Score=56.31  Aligned_cols=33  Identities=15%  Similarity=0.198  Sum_probs=30.5

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      -.|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus         6 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~   38 (391)
T PRK08020          6 TDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA   38 (391)
T ss_pred             ccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            479999999999999999999999999998764

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=95.98  E-value=0.0073  Score=53.74  Aligned_cols=36  Identities=11%  Similarity=0.193  Sum_probs=32.5

Q ss_pred             CCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       195 ~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      ..+++|+|||+|..|.-.+..|.+.|.+|+++.+..
T Consensus         8 l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~   43 (202)
T PRK06718          8 LSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPEL   43 (202)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            578999999999999999999999999999997643

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=95.91  E-value=0.022  Score=56.43  Aligned_cols=32  Identities=19%  Similarity=0.228  Sum_probs=29.7

Q ss_pred             CEEEEEecCCcHHHHHHHHhcc---CCEEEEEEec
Q 013303          198 QVVILIGHYASGLDIKRDLAGF---AKEVHIASRS  229 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~---~~~V~l~~r~  229 (446)
                      -+|+|||+|++|.-+|..|++.   |.+|+++.+.
T Consensus         4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~   38 (395)
T PRK05732          4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF   38 (395)
T ss_pred             CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence            3699999999999999999998   9999999984

>PRK08244 hypothetical protein; Provisional

Probab=95.89  E-value=0.017  Score=59.10  Aligned_cols=34  Identities=26%  Similarity=0.251  Sum_probs=31.2

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      ..|+|||+|++|+-+|..|++.|.+|+++.+.+.
T Consensus         3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~   36 (493)
T PRK08244          3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKE   36 (493)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            3699999999999999999999999999998753

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.86  E-value=0.011  Score=53.53  Aligned_cols=33  Identities=42%  Similarity=0.716  Sum_probs=31.3

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      ++++|||+|..|...|+.|.+.|++|+++|+.+
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~   33 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDE   33 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence            589999999999999999999999999999975

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=95.84  E-value=0.0096  Score=52.19  Aligned_cols=34  Identities=35%  Similarity=0.560  Sum_probs=27.5

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~   36 (446)
                      ++|+|||.|..||.+|..|++.|++|+.+|.++.
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~   34 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE   34 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence            5899999999999999999999999999998753

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=95.79  E-value=0.0097  Score=55.42  Aligned_cols=35  Identities=31%  Similarity=0.511  Sum_probs=32.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~   36 (446)
                      ...|-|||||.||..||.+++++|+.|.++|-++.
T Consensus         3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~   37 (439)
T COG1206           3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV   37 (439)
T ss_pred             CCceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence            46799999999999999999999999999998753

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=95.79  E-value=0.022  Score=58.86  Aligned_cols=101  Identities=22%  Similarity=0.208  Sum_probs=69.9

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d   82 (446)
                      ++-+|||||.-||.+|..|.+.|.++++++-.+.+                           |-                
T Consensus       146 ~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~l---------------------------Me----------------  182 (793)
T COG1251         146 KKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTL---------------------------ME----------------  182 (793)
T ss_pred             CCcEEEccchhhhHHHHHHHhCCCceEEEeecchH---------------------------HH----------------
Confidence            45689999999999999999999999999875422                           00                


Q ss_pred             CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEcc
Q 013303           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN  162 (446)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAt  162 (446)
                                   ...+   ..-.+.|+...++.|+.  ++++..++.+-... ..-.+...++.    .+.+|.||.|+
T Consensus       183 -------------rQLD---~~ag~lL~~~le~~Gi~--~~l~~~t~ei~g~~-~~~~vr~~DG~----~i~ad~VV~a~  239 (793)
T COG1251         183 -------------RQLD---RTAGRLLRRKLEDLGIK--VLLEKNTEEIVGED-KVEGVRFADGT----EIPADLVVMAV  239 (793)
T ss_pred             -------------Hhhh---hHHHHHHHHHHHhhcce--eecccchhhhhcCc-ceeeEeecCCC----cccceeEEEec
Confidence                         0011   11234566777777887  66666666654422 23345666665    78999999999


Q ss_pred             CCCCCCccC
Q 013303          163 GHFSVPRLA  171 (446)
Q Consensus       163 G~~s~p~~p  171 (446)
                      |  -+|+.-
T Consensus       240 G--IrPn~e  246 (793)
T COG1251         240 G--IRPNDE  246 (793)
T ss_pred             c--cccccH
Confidence            9  777753

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=95.78  E-value=0.0086  Score=47.01  Aligned_cols=33  Identities=27%  Similarity=0.345  Sum_probs=30.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG   34 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~   34 (446)
                      .++|+|||||..|..-++.|.+.|.+|+|+.+.
T Consensus         7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~   39 (103)
T PF13241_consen    7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPE   39 (103)
T ss_dssp             T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence            578999999999999999999999999999986

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=95.78  E-value=0.012  Score=46.14  Aligned_cols=36  Identities=17%  Similarity=0.214  Sum_probs=31.8

Q ss_pred             CCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       195 ~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      .++++|+|||+|..|..=+..|.+.|.+|+++....
T Consensus         5 l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    5 LKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             -TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            578999999999999999999999999999998763

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=95.77  E-value=0.018  Score=57.80  Aligned_cols=33  Identities=21%  Similarity=0.120  Sum_probs=30.6

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      -.|+|||+|++|.-+|..|++.|.+|.++.+..
T Consensus         6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~   38 (428)
T PRK10157          6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGN   38 (428)
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCC
Confidence            369999999999999999999999999999864

>PRK06475 salicylate hydroxylase; Provisional

Probab=95.68  E-value=0.029  Score=55.77  Aligned_cols=34  Identities=21%  Similarity=0.236  Sum_probs=31.5

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      ++|+|||||.+|+-+|..|++.|.+|+++.+.+.
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~   36 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQE   36 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            6899999999999999999999999999998753

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=95.68  E-value=0.026  Score=55.56  Aligned_cols=31  Identities=16%  Similarity=0.139  Sum_probs=29.3

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRS  229 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~  229 (446)
                      +|+|||+|++|+-+|..|++.|.+|+++.+.
T Consensus         3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~   33 (374)
T PRK06617          3 NTVILGCGLSGMLTALSFAQKGIKTTIFESK   33 (374)
T ss_pred             cEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence            5999999999999999999999999999975

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=95.66  E-value=0.016  Score=50.59  Aligned_cols=32  Identities=38%  Similarity=0.610  Sum_probs=28.3

Q ss_pred             eEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         4 ~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      +|+|||||..|...|..++..|++|+++|.++
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~   32 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP   32 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            58999999999999999999999999999864

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=95.64  E-value=0.02  Score=51.07  Aligned_cols=34  Identities=29%  Similarity=0.360  Sum_probs=31.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .++|+|||||..|...++.|.+.|.+|+|+++..
T Consensus         9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~   42 (205)
T TIGR01470         9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL   42 (205)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            4789999999999999999999999999998753

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.56  E-value=0.014  Score=59.08  Aligned_cols=33  Identities=30%  Similarity=0.512  Sum_probs=30.8

Q ss_pred             eEEEECcChHHHHHHHHHHHCCCcEEEEeeCCC
Q 013303            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (446)
Q Consensus         4 ~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~   36 (446)
                      +|+|||+|++|+++|+.|++.|++|+++|+...
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~   34 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS   34 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            699999999999999999999999999998754

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=95.55  E-value=0.015  Score=62.34  Aligned_cols=38  Identities=24%  Similarity=0.216  Sum_probs=35.4

Q ss_pred             CCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       194 ~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      .-.|++|.|||+|++|+-.|.+|.+.|..|++..|+++
T Consensus      1782 ~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr 1819 (2142)
T KOG0399|consen 1782 FRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDR 1819 (2142)
T ss_pred             cccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCC
Confidence            34689999999999999999999999999999999886

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=95.49  E-value=0.011  Score=58.86  Aligned_cols=32  Identities=34%  Similarity=0.447  Sum_probs=29.0

Q ss_pred             hHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303           12 AAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (446)
Q Consensus        12 ~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~   43 (446)
                      .|||+||..|++.|++|+|||+++++||....
T Consensus         1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t   32 (450)
T PF01593_consen    1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRT   32 (450)
T ss_dssp             HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-E
T ss_pred             ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEE
Confidence            58999999999999999999999999997654

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=95.49  E-value=0.04  Score=53.23  Aligned_cols=33  Identities=18%  Similarity=0.183  Sum_probs=30.3

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      .+|+|||||.+|+-.|..|.+.|-+|.+...+.
T Consensus         3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e   35 (420)
T KOG2614|consen    3 PKVVIVGGGIVGLATALALHRKGIDVVVLESRE   35 (420)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCeEEEEeecc
Confidence            579999999999999999999999999998754

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=95.48  E-value=0.014  Score=58.44  Aligned_cols=38  Identities=24%  Similarity=0.304  Sum_probs=34.6

Q ss_pred             CCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       194 ~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      .+.+++|.|||+|+-|+..|..|++.|..|++..+.+.
T Consensus       120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~  157 (457)
T COG0493         120 SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVAL  157 (457)
T ss_pred             CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCC
Confidence            45679999999999999999999999999999888765

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=95.45  E-value=0.025  Score=48.12  Aligned_cols=32  Identities=25%  Similarity=0.287  Sum_probs=29.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEK   33 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~   33 (446)
                      .++|+|||||..|..-++.|.+.|.+|+|+.+
T Consensus        13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp   44 (157)
T PRK06719         13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP   44 (157)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence            47899999999999999999999999999964

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=95.44  E-value=0.037  Score=54.24  Aligned_cols=33  Identities=15%  Similarity=0.225  Sum_probs=29.6

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      -.|+|||||..|+|.|...++.|.+.++++.+-
T Consensus        29 ~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~l   61 (679)
T KOG2311|consen   29 YDVVVIGGGHAGCEAAAAAARLGARTLLLTHNL   61 (679)
T ss_pred             ccEEEECCCccchHHHHHHHhcCCceEEeeccc
Confidence            369999999999999999999999988887653

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=95.37  E-value=0.04  Score=54.33  Aligned_cols=63  Identities=16%  Similarity=0.207  Sum_probs=49.5

Q ss_pred             CCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCCC
Q 013303           98 RYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVP  168 (446)
Q Consensus        98 ~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~p  168 (446)
                      .......+...|.+.+.+ |+.  +.+++.|.+|+..+ +.|.|++.++.    .+.+|.||+|+|.++..
T Consensus       130 g~idp~~~~~~l~~~~~~-G~~--i~~~~~V~~i~~~~-~~~~v~t~~g~----~~~a~~vV~a~G~~~~~  192 (381)
T TIGR03197       130 GWLSPPQLCRALLAHAGI-RLT--LHFNTEITSLERDG-EGWQLLDANGE----VIAASVVVLANGAQAGQ  192 (381)
T ss_pred             cccChHHHHHHHHhccCC-CcE--EEeCCEEEEEEEcC-CeEEEEeCCCC----EEEcCEEEEcCCccccc
Confidence            344567788888888877 877  89999999998765 67888776553    58999999999987644

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>TIGR00136 gidA glucose-inhibited division protein A

Probab=95.35  E-value=0.036  Score=57.16  Aligned_cols=31  Identities=19%  Similarity=0.205  Sum_probs=28.9

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRS  229 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~  229 (446)
                      .|+|||+|.+|+++|..+++.|.+|.++.+.
T Consensus         2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~   32 (617)
T TIGR00136         2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLN   32 (617)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCCEEEEecc
Confidence            4899999999999999999999999999875

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.33  E-value=0.42  Score=45.22  Aligned_cols=105  Identities=19%  Similarity=0.221  Sum_probs=66.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .|||+|||||-+|+.||.-|+----.|+++|=.+.+                                            
T Consensus       354 gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eL--------------------------------------------  389 (520)
T COG3634         354 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEL--------------------------------------------  389 (520)
T ss_pred             CceEEEECCCcchHHHHHhHHhhhheeeeeecchhh--------------------------------------------
Confidence            589999999999999999997654578998854322                                            


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVV  159 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~VV  159 (446)
                                            ...+-|++-+... ++.  |..|..-+.|.-+.+.---+.+.+. .++...+.-+-|+
T Consensus       390 ----------------------kAD~VLq~kl~sl~Nv~--ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvF  445 (520)
T COG3634         390 ----------------------KADAVLQDKLRSLPNVT--IITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVF  445 (520)
T ss_pred             ----------------------hhHHHHHHHHhcCCCcE--EEecceeeEEecCCceecceEEEeccCCceeEEEeeeeE
Confidence                                  0012233323222 444  6777777776644311122344432 3456677888899


Q ss_pred             EccCCCCCCccCCCCCC
Q 013303          160 VCNGHFSVPRLAQVPGI  176 (446)
Q Consensus       160 vAtG~~s~p~~p~i~G~  176 (446)
                      |-.|  -.|+.-.+.|.
T Consensus       446 VqIG--L~PNT~WLkg~  460 (520)
T COG3634         446 VQIG--LLPNTEWLKGA  460 (520)
T ss_pred             EEEe--cccChhHhhch
Confidence            9999  67776656654

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=95.32  E-value=0.027  Score=55.32  Aligned_cols=35  Identities=20%  Similarity=0.355  Sum_probs=33.2

Q ss_pred             CCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       197 ~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      .++++|||||.+|+..|.+|++.|-+|+++.+.+.
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKeps  158 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPS  158 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCc
Confidence            57999999999999999999999999999999875

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=95.23  E-value=0.02  Score=41.09  Aligned_cols=30  Identities=27%  Similarity=0.229  Sum_probs=27.2

Q ss_pred             EEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          202 LIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       202 VVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      |||+|.+|+-.|..|++.+.+|+++.+.+.
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~   30 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR   30 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence            799999999999999999999999998764

...

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=95.16  E-value=0.034  Score=49.50  Aligned_cols=33  Identities=24%  Similarity=0.356  Sum_probs=30.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG   34 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~   34 (446)
                      .++|+|||||-.|...|+.|.+.|.+|+|+++.
T Consensus        10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718         10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            579999999999999999999999999999863

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=95.15  E-value=0.058  Score=56.57  Aligned_cols=35  Identities=14%  Similarity=0.149  Sum_probs=32.0

Q ss_pred             CCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       196 ~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      +..+|+|||||..|+-+|..|++.|.+|+++.|.+
T Consensus        80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            45789999999999999999999999999999864

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=95.14  E-value=0.046  Score=56.63  Aligned_cols=33  Identities=21%  Similarity=0.314  Sum_probs=31.0

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      .+|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus        11 ~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~   43 (538)
T PRK06183         11 TDVVIVGAGPVGLTLANLLGQYGVRVLVLERWP   43 (538)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            579999999999999999999999999999875

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=95.14  E-value=0.029  Score=54.44  Aligned_cols=34  Identities=29%  Similarity=0.568  Sum_probs=32.1

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeC
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG   34 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~   34 (446)
                      |+++|+|||+|.-|...|..|++.|++|+++++.
T Consensus         1 ~~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~   34 (341)
T PRK08229          1 MMARICVLGAGSIGCYLGGRLAAAGADVTLIGRA   34 (341)
T ss_pred             CCceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence            6789999999999999999999999999999984

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=95.13  E-value=0.026  Score=56.09  Aligned_cols=43  Identities=26%  Similarity=0.409  Sum_probs=37.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHC----CCcEEEEeeCCCcCceeeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLRE----GHTVVVYEKGEQVGGSWIYT   44 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~----g~~v~v~e~~~~~GG~w~~~   44 (446)
                      .+++=|||+|.|+|+||..|.|.    |-+|.|+|+.+..||.+.-.
T Consensus         2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~   48 (500)
T PF06100_consen    2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGA   48 (500)
T ss_pred             CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCC
Confidence            46788999999999999999986    45999999999999887544

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=95.12  E-value=0.045  Score=48.32  Aligned_cols=88  Identities=17%  Similarity=0.189  Sum_probs=53.8

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC---------------------------ccccccCC----CCCCeee
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA---------------------------DETHEKQP----GYDNMWL  246 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~---------------------------~~~~~~~~----~~~~v~~  246 (446)
                      .+|+|||+|+.|.-.|..+++..-+-.++..--.                           .+.+.++.    +.+.-..
T Consensus         9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i~   88 (322)
T KOG0404|consen    9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEII   88 (322)
T ss_pred             eeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhcceee
Confidence            5899999999999999999887655444432110                           11111111    1122222


Q ss_pred             ccceeEEccCCc--EEecCCcEEeecEEEEecCccCCCCCC
Q 013303          247 HSMVERANEDGT--VVFRNGRVVSADVIMHCTGYKYNYPFL  285 (446)
Q Consensus       247 ~~~v~~i~~~~~--v~~~dG~~~~~D~vi~atG~~~~~~~l  285 (446)
                      ...|.+++-.+.  ..++|...+.+|.||+|||-...--+|
T Consensus        89 tEtVskv~~sskpF~l~td~~~v~~~avI~atGAsAkRl~~  129 (322)
T KOG0404|consen   89 TETVSKVDLSSKPFKLWTDARPVTADAVILATGASAKRLHL  129 (322)
T ss_pred             eeehhhccccCCCeEEEecCCceeeeeEEEecccceeeeec
Confidence            334555543333  556788889999999999987654344

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=95.11  E-value=0.047  Score=45.15  Aligned_cols=34  Identities=29%  Similarity=0.394  Sum_probs=31.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCc-EEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHT-VVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~-v~v~e~~~   35 (446)
                      .++|+|||+|-+|-+++..|...|.+ ++|+.|+.
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~   46 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP   46 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred             CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence            57899999999999999999999986 99999863

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=95.09  E-value=0.025  Score=54.36  Aligned_cols=33  Identities=42%  Similarity=0.621  Sum_probs=30.9

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      ++|+|||.|..||+.|..|++.|++|+++|..+
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~   33 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE   33 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence            589999999999999999999999999999854

>PRK07538 hypothetical protein; Provisional

Probab=95.08  E-value=0.076  Score=53.01  Aligned_cols=32  Identities=22%  Similarity=0.212  Sum_probs=30.2

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      +|+|||+|++|+=+|..|++.|.+|+++.+.+
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~   33 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAP   33 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCC
Confidence            69999999999999999999999999999875

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=95.04  E-value=0.081  Score=52.43  Aligned_cols=33  Identities=21%  Similarity=0.175  Sum_probs=31.0

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      .+|+|||+|+.|+-+|..|++.|.+|+++.+.+
T Consensus         3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~   35 (392)
T PRK08243          3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRS   35 (392)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCC
Confidence            579999999999999999999999999999875

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=95.02  E-value=0.038  Score=47.62  Aligned_cols=34  Identities=29%  Similarity=0.254  Sum_probs=29.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      +.+|+|+|+|.+|..|+..|...|.+++++|...
T Consensus        20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~   53 (168)
T PF01262_consen   20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP   53 (168)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred             CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence            4689999999999999999999999999999754

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=94.98  E-value=0.031  Score=53.43  Aligned_cols=33  Identities=33%  Similarity=0.514  Sum_probs=31.2

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      ++|+|||+|.-|.+.|..|++.|++|+++|+++
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~   35 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADP   35 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence            589999999999999999999999999999875

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.97  E-value=0.02  Score=57.91  Aligned_cols=80  Identities=16%  Similarity=0.260  Sum_probs=51.9

Q ss_pred             CCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCccc---cccCCCCCCeeeccceeEEccCCcEEecCCcEEeecE
Q 013303          195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADET---HEKQPGYDNMWLHSMVERANEDGTVVFRNGRVVSADV  271 (446)
Q Consensus       195 ~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~~~---~~~~~~~~~v~~~~~v~~i~~~~~v~~~dG~~~~~D~  271 (446)
                      +++|+|+|+|+|.+|..+|..|++.|.+|+++.+......   ..++.+.+       +.-+..+  .  .+...-.+|.
T Consensus         3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~-------~~~~~~~--~--~~~~~~~~d~   71 (450)
T PRK14106          3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELG-------IELVLGE--Y--PEEFLEGVDL   71 (450)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC-------CEEEeCC--c--chhHhhcCCE
Confidence            4689999999999999999999999999999988653111   11111111       1111110  0  0111124899


Q ss_pred             EEEecCccCCCCCC
Q 013303          272 IMHCTGYKYNYPFL  285 (446)
Q Consensus       272 vi~atG~~~~~~~l  285 (446)
                      ||.++|..++.|.+
T Consensus        72 vv~~~g~~~~~~~~   85 (450)
T PRK14106         72 VVVSPGVPLDSPPV   85 (450)
T ss_pred             EEECCCCCCCCHHH
Confidence            99999998887754

>PRK11445 putative oxidoreductase; Provisional

Probab=94.97  E-value=0.08  Score=51.61  Aligned_cols=31  Identities=29%  Similarity=0.284  Sum_probs=28.9

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      .|+|||+|++|+-+|..|++. .+|+++.+.+
T Consensus         3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~   33 (351)
T PRK11445          3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKH   33 (351)
T ss_pred             eEEEECCCHHHHHHHHHHhcc-CCEEEEECCC
Confidence            699999999999999999998 8999999865

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=94.92  E-value=0.14  Score=49.32  Aligned_cols=64  Identities=20%  Similarity=0.272  Sum_probs=49.0

Q ss_pred             CCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceE-EEEEeCCCceEEEEEcEEEEccCCCCCCc
Q 013303           98 RYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSRKKDDVVEEETFDAVVVCNGHFSVPR  169 (446)
Q Consensus        98 ~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~-v~~~~~~~~~~~~~~d~VVvAtG~~s~p~  169 (446)
                      .+.....+...+.+.+.+.|+.  +.++++|+.+...+ +.+. |.+.++     ++.+|.||+|+|.++...
T Consensus       132 g~v~p~~l~~~l~~~~~~~g~~--~~~~~~v~~i~~~~-~~~~~v~~~~g-----~~~a~~vV~a~G~~~~~l  196 (337)
T TIGR02352       132 AHVDPRALLKALEKALEKLGVE--IIEHTEVQHIEIRG-EKVTAIVTPSG-----DVQADQVVLAAGAWAGEL  196 (337)
T ss_pred             ceEChHHHHHHHHHHHHHcCCE--EEccceEEEEEeeC-CEEEEEEcCCC-----EEECCEEEEcCChhhhhc
Confidence            4456688888888888988987  99999999998765 5443 444332     689999999999876543

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=94.89  E-value=0.042  Score=52.40  Aligned_cols=34  Identities=26%  Similarity=0.350  Sum_probs=31.9

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeC
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG   34 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~   34 (446)
                      |.++|+|||+|.-|...|..|++.|.+|+++.|.
T Consensus         1 ~~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~   34 (305)
T PRK05708          1 MSMTWHILGAGSLGSLWACRLARAGLPVRLILRD   34 (305)
T ss_pred             CCceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence            5679999999999999999999999999999995

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=94.82  E-value=0.057  Score=54.51  Aligned_cols=32  Identities=19%  Similarity=0.184  Sum_probs=26.4

Q ss_pred             EEEEEecCCcHHHHHHHHhccC---CEEEEEEecC
Q 013303          199 VVILIGHYASGLDIKRDLAGFA---KEVHIASRSV  230 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~---~~V~l~~r~~  230 (446)
                      +|+|||||..|.=.|..|++.+   .+|+++.+..
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~   35 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPD   35 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SS
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCC
Confidence            5999999999999999999987   7899998865

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=94.78  E-value=0.026  Score=55.62  Aligned_cols=33  Identities=21%  Similarity=0.148  Sum_probs=30.4

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      ++|+|||||..|+++|..|++.|.+|+++.+++
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp   35 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRP   35 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence            579999999999999999999999999998643

>PRK06996 hypothetical protein; Provisional

Probab=94.77  E-value=0.07  Score=53.02  Aligned_cols=33  Identities=15%  Similarity=0.142  Sum_probs=29.2

Q ss_pred             CEEEEEecCCcHHHHHHHHhccC----CEEEEEEecC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFA----KEVHIASRSV  230 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~----~~V~l~~r~~  230 (446)
                      ..|+|||+|+.|.-+|..|++.|    .+|+++.+.+
T Consensus        12 ~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~   48 (398)
T PRK06996         12 FDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE   48 (398)
T ss_pred             CCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence            47999999999999999999886    4799999864

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=94.73  E-value=0.039  Score=52.66  Aligned_cols=69  Identities=25%  Similarity=0.370  Sum_probs=46.6

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecCC--ccccccCCCCCCe------eeccceeEEccC---CcEEecCCcEE
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA--DETHEKQPGYDNM------WLHSMVERANED---GTVVFRNGRVV  267 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~--~~~~~~~~~~~~v------~~~~~v~~i~~~---~~v~~~dG~~~  267 (446)
                      .|+|||+|..|.-+|..|++.|.+|+++.|.-.  +..+.++.+.+..      -+...|+.|+..   |-..|.||++.
T Consensus        47 DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk~gk~v  126 (509)
T KOG1298|consen   47 DVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFKDGKEV  126 (509)
T ss_pred             cEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEEeCCcee
Confidence            499999999999999999999999999999754  3344444444322      122334444322   23567777653

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.69  E-value=0.042  Score=51.95  Aligned_cols=33  Identities=18%  Similarity=0.329  Sum_probs=31.1

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      ++|+|||+|.-|...|..|++.|++|+++|+++
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   34 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ   34 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence            689999999999999999999999999999864

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.68  E-value=0.039  Score=52.03  Aligned_cols=33  Identities=36%  Similarity=0.585  Sum_probs=31.2

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      ++|+|||+|.-|...|..++..|++|+++|+.+
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~   38 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTE   38 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence            589999999999999999999999999999875

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=94.67  E-value=0.032  Score=56.95  Aligned_cols=36  Identities=28%  Similarity=0.435  Sum_probs=32.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHC-CCcEEEEeeCCCc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQV   37 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~-g~~v~v~e~~~~~   37 (446)
                      .+|.+|||||.||...|..|++. ..+|+|+|++...
T Consensus        57 ~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   57 SYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP   93 (623)
T ss_pred             CCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence            57999999999999999999987 5899999997655

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.64  E-value=0.051  Score=51.52  Aligned_cols=34  Identities=29%  Similarity=0.440  Sum_probs=31.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .++|+|||+|.-|...|..|++.|++|+++|+++
T Consensus         4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (292)
T PRK07530          4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA   37 (292)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            3689999999999999999999999999999864

>PRK04148 hypothetical protein; Provisional

Probab=94.62  E-value=0.037  Score=45.28  Aligned_cols=33  Identities=24%  Similarity=0.443  Sum_probs=30.1

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~   36 (446)
                      ++|++||.| .|...|..|++.|++|+.+|.++.
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            579999999 899999999999999999998764

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.59  E-value=0.045  Score=52.27  Aligned_cols=33  Identities=27%  Similarity=0.384  Sum_probs=31.2

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      ++|+|||+|.-|...|..++..|++|+++|..+
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~   40 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP   40 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            689999999999999999999999999999865

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=94.58  E-value=0.21  Score=49.50  Aligned_cols=33  Identities=18%  Similarity=0.250  Sum_probs=30.1

Q ss_pred             CEEEEEecCCcHHHHHHHHhccC--CEEEEEEecC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFA--KEVHIASRSV  230 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~--~~V~l~~r~~  230 (446)
                      -.|+|||||.+|+-+|.+|++..  .+|+++.+..
T Consensus         4 ~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~   38 (429)
T COG0579           4 YDVVIIGGGIMGAATAYELSEYEPDLSVALLEKED   38 (429)
T ss_pred             eeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccC
Confidence            46999999999999999999998  8999998855

>TIGR00275 flavoprotein, HI0933 family

Probab=94.54  E-value=0.055  Score=53.79  Aligned_cols=30  Identities=27%  Similarity=0.220  Sum_probs=27.7

Q ss_pred             EEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          201 ILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       201 vVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      +|||+|++|+=.|..+++.+.+|+++.+.+
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~   30 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNK   30 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCc
Confidence            589999999999999999999999999765

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=94.53  E-value=0.03  Score=49.95  Aligned_cols=37  Identities=19%  Similarity=0.252  Sum_probs=33.7

Q ss_pred             CCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       194 ~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      ++.||+|+|||||..|..=+..|.+.|.+|+++....
T Consensus         9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~   45 (210)
T COG1648           9 DLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEF   45 (210)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCc
Confidence            3578999999999999999999999999999998765

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.51  E-value=0.049  Score=51.46  Aligned_cols=34  Identities=26%  Similarity=0.524  Sum_probs=31.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .++|+|||+|.-|...|..|++.|++|+++|+++
T Consensus         3 ~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (287)
T PRK08293          3 IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD   36 (287)
T ss_pred             ccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            3689999999999999999999999999999864

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=94.51  E-value=0.04  Score=54.74  Aligned_cols=42  Identities=24%  Similarity=0.519  Sum_probs=33.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~   43 (446)
                      .+||+|+|.|..-...|..|++.|.+|+.+|+++..||.|..
T Consensus         4 ~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~as   45 (438)
T PF00996_consen    4 EYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWAS   45 (438)
T ss_dssp             BESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-E
T ss_pred             cceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhc
Confidence            479999999999999999999999999999999999998864

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=94.51  E-value=0.041  Score=46.77  Aligned_cols=34  Identities=21%  Similarity=0.252  Sum_probs=31.3

Q ss_pred             CCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEE
Q 013303          194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIAS  227 (446)
Q Consensus       194 ~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~  227 (446)
                      +..|++|+|||||..|...+..|.+.+.+|+++.
T Consensus        10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs   43 (157)
T PRK06719         10 NLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS   43 (157)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence            3578999999999999999999999999999994

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.50  E-value=0.12  Score=51.11  Aligned_cols=34  Identities=21%  Similarity=0.116  Sum_probs=27.3

Q ss_pred             CEEEEEecCCcHHHHHHHHhccC---CEEEEEEecCC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFA---KEVHIASRSVA  231 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~---~~V~l~~r~~~  231 (446)
                      ++|+|||+|.||+.+|.+|.+..   ..|.++.+.+.
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~   38 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN   38 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc
Confidence            47999999999999999998652   23888877653

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=94.36  E-value=0.063  Score=48.92  Aligned_cols=32  Identities=19%  Similarity=0.299  Sum_probs=30.1

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      +|+|||+|..|+-.|..|+..|.+|+++.++.
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~   34 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGR   34 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEEEcCC
Confidence            58999999999999999999999999999865

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=94.35  E-value=0.065  Score=45.13  Aligned_cols=30  Identities=33%  Similarity=0.620  Sum_probs=28.7

Q ss_pred             EEEECcChHHHHHHHHHHHCCCcEEEEeeC
Q 013303            5 VAVIGAGAAGLVVGHELLREGHTVVVYEKG   34 (446)
Q Consensus         5 V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~   34 (446)
                      |+|||+|..|...|..|++.|.+|+++.+.
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~   30 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRS   30 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEcc
Confidence            799999999999999999999999999985

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=94.30  E-value=0.069  Score=45.77  Aligned_cols=34  Identities=26%  Similarity=0.560  Sum_probs=29.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      |++|.+||-|..|...|+.|.+.|++|.++|++.
T Consensus         1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~   34 (163)
T PF03446_consen    1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP   34 (163)
T ss_dssp             -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred             CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence            5799999999999999999999999999999864

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=94.27  E-value=0.055  Score=51.26  Aligned_cols=33  Identities=24%  Similarity=0.499  Sum_probs=31.1

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      ++|+|||+|.-|...|..|++.|++|+++|+++
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE   36 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            689999999999999999999999999999865

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=94.25  E-value=0.037  Score=54.90  Aligned_cols=33  Identities=21%  Similarity=0.116  Sum_probs=30.2

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      +|+|||||.+|+++|..|++.|.+|+++.+++.
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~   34 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE   34 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence            699999999999999999999999999986543

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	446
2xvi_A	464	Crystal Structure Of The Mutant Bacterial Flavin Co		3e-37
2xve_A	464	Crystal Structure Of Bacterial Flavin-Containing Mo		6e-37
2vq7_A	461	Bacterial Flavin-Containing Monooxygenase In Comple		3e-36
2xlr_A	461	Joint-Functions Of Protein Residues And Nadp(H) In		1e-35
2xvf_A	464	Crystal Structure Of Bacterial Flavin-Containing Mo		1e-35
2xlp_A	461	Joint-Functions Of Protein Residues And Nadp(H) In		1e-35
2xls_A	461	Joint-Functions Of Protein Residues And Nadp(H) In		2e-35
1vqw_A	457	Crystal Structure Of A Protein With Similarity To F		4e-32
2gv8_A	447	Crystal Structure Of Flavin-Containing Monooxygenas		5e-32
2ylx_A	542	Snapshots Of Enzymatic Baeyer-Villiger Catalysis: O		6e-11
1w4x_A	542	Phenylacetone Monooxygenase, A Baeyer-villiger Mono		1e-10
2ylw_A	542	Snapshots Of Enzymatic Baeyer-Villiger Catalysis: O		1e-10
2ylz_A	542	Snapshots Of Enzymatic Baeyer-Villiger Catalysis: O		1e-10
3uov_A	545	Crystal Structure Of Otemo (Fad Bound Form 1) Lengt		8e-10
4ap3_A	549	Oxidized Steroid Monooxygenase Bound To Nadp Length		6e-06
4aos_A	549	Oxidized Steroid Monooxygenase Bound To Nadp Length		6e-06
4ap1_A	549	Oxidized Steroid Monooxygenase Bound To Nadp Length		6e-06
3ucl_A	573	Cyclohexanone-Bound Crystal Structure Of Cyclohexan		3e-05
3gwd_A	540	Closed Crystal Structure Of Cyclohexanone Monooxyge		3e-05
4a9w_A	357	Flavin-Containing Monooxygenase From Stenotrophomon		3e-04

>pdb|2XVI|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin Containing Monooxygenase (Y207s) Length = 464

Iteration: 1
 Score =  152 bits (385), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 113/372 (30%), Positives = 182/372 (48%), Gaps = 32/372 (8%)
Query: 28  VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVA 87
           +V +EK    GG W YT  T     G+D N  PVHSS+Y+ L  N P+E + F  Y F  
Sbjct: 34  LVCFEKQADWGGQWNYTWRT-----GLDENGEPVHSSMYRYLWSNGPKECLEFADYTF-- 86
Query: 88  RNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW---KVKSR 144
            +      +  YP  E +  Y++    + GV + +R +T V +    E ++     V+  
Sbjct: 87  -DEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDH 145
Query: 145 KKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIG 204
             D +  EE FD VV C GHFS P + +  G + + G+ +H+H++R    F+D+ V+L+G
Sbjct: 146 TTDTIYSEE-FDYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVG 204
Query: 205 HYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVERAN----EDGTVV 260
             +S  DI      +  +  I+    A        GY   W  +  ER N    +     
Sbjct: 205 SSSSAEDIGSQCYKYGAKKLISCYRTA------PMGYK--WPENWDERPNLVRVDTENAY 256
Query: 261 FRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVFPPVL---APGLSFV 317
           F +G     D I+ CTGY +++PFL  + +  V +NR+ PL  +++  V+    P   ++
Sbjct: 257 FADGSSEKVDAIILCTGYIHHFPFL-NDDLRLVTNNRLWPL--NLYKGVVWEDNPKFFYI 313
Query: 318 GIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYSK-LEASGKPKRYTHIM 376
           G+  +   F  F+ Q+ +   V+ GR+ LPS++EM  D  A+  K L      + YT+  
Sbjct: 314 GMQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEMKADSMAWREKELTLVTAEEMYTYQG 373
Query: 377 DYPQ-LIEYTDW 387
           DY Q LI+ TD+
Sbjct: 374 DYIQNLIDMTDY 385

>pdb|2XVE|A Chain A, Crystal Structure Of Bacterial Flavin-Containing Monooxygenase Length = 464

Iteration: 1
 Score =  151 bits (382), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 113/372 (30%), Positives = 181/372 (48%), Gaps = 32/372 (8%)
Query: 28  VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVA 87
           +V +EK    GG W YT  T     G+D N  PVHSS+Y+ L  N P+E + F  Y F  
Sbjct: 34  LVCFEKQADWGGQWNYTWRT-----GLDENGEPVHSSMYRYLWSNGPKECLEFADYTF-- 86
Query: 88  RNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW---KVKSR 144
            +      +  YP  E +  Y++    + GV + +R +T V +    E ++     V+  
Sbjct: 87  -DEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDH 145
Query: 145 KKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIG 204
             D +  EE FD VV C GHFS P + +  G + + G+ +H+H++R    F+D+ V+L+G
Sbjct: 146 TTDTIYSEE-FDYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVG 204
Query: 205 HYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVERAN----EDGTVV 260
              S  DI      +  +  I+    A        GY   W  +  ER N    +     
Sbjct: 205 SSYSAEDIGSQCYKYGAKKLISCYRTA------PMGYK--WPENWDERPNLVRVDTENAY 256
Query: 261 FRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVFPPVL---APGLSFV 317
           F +G     D I+ CTGY +++PFL  + +  V +NR+ PL  +++  V+    P   ++
Sbjct: 257 FADGSSEKVDAIILCTGYIHHFPFL-NDDLRLVTNNRLWPL--NLYKGVVWEDNPKFFYI 313
Query: 318 GIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYSK-LEASGKPKRYTHIM 376
           G+  +   F  F+ Q+ +   V+ GR+ LPS++EM  D  A+  K L      + YT+  
Sbjct: 314 GMQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEMKADSMAWREKELTLVTAEEMYTYQG 373
Query: 377 DYPQ-LIEYTDW 387
           DY Q LI+ TD+
Sbjct: 374 DYIQNLIDMTDY 385

>pdb|2VQ7|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With Nadp: Native Data Length = 461

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 110/371 (29%), Positives = 179/371 (48%), Gaps = 30/371 (8%)
Query: 28  VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVA 87
           +V +EK    GG W YT  T     G+D N  PVHSS+Y+ L  N P+E + F  Y F  
Sbjct: 39  LVCFEKQADWGGQWNYTWRT-----GLDENGEPVHSSMYRYLWSNGPKECLEFADYTF-- 91
Query: 88  RNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE-SNKWKVKSRK- 145
            +      +  YP  E +  Y++    + GV + +R +T V +    E S  + V  +  
Sbjct: 92  -DEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDH 150
Query: 146 KDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGH 205
             D +    FD VV C GHFS P + +  G + + G+ +H+H++R    F+D+ V+L+G 
Sbjct: 151 TTDTIYSAAFDYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGS 210
Query: 206 YASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVERAN----EDGTVVF 261
             S  DI      +  +  I+    A   ++        W  +  ER N    +     F
Sbjct: 211 SYSAEDIGSQCYKYGAKKLISCYRTAPMGYK--------WPENWDERPNLVRVDTENAYF 262
Query: 262 RNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVFPPVL---APGLSFVG 318
            +G     D I+ CTGY +++PFL  + +  V +NR+ PL  +++  V+    P   ++G
Sbjct: 263 ADGSSEKVDAIILCTGYIHHFPFL-NDDLRLVTNNRLWPL--NLYKGVVWEDNPKFFYIG 319
Query: 319 IPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYSK-LEASGKPKRYTHIMD 377
           +  +   F  F+ Q+ +   V+ GR+ LPS++EM  D  A+  K L      + YT+  D
Sbjct: 320 MQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEMKADSMAWREKELTLVTAEEMYTYQGD 379
Query: 378 YPQ-LIEYTDW 387
           Y Q LI+ TD+
Sbjct: 380 YIQNLIDMTDY 390

>pdb|2XLR|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-Activation By Flavin-Containing Monooxygenase: Asn78asp Mutant Length = 461

Iteration: 1
 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 109/371 (29%), Positives = 179/371 (48%), Gaps = 30/371 (8%)
Query: 28  VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVA 87
           +V +EK    GG W YT  T     G+D N  PVHSS+Y+ L  + P+E + F  Y F  
Sbjct: 39  LVCFEKQADWGGQWNYTWRT-----GLDENGEPVHSSMYRYLWSDGPKECLEFADYTF-- 91
Query: 88  RNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE-SNKWKVKSRK- 145
            +      +  YP  E +  Y++    + GV + +R +T V +    E S  + V  +  
Sbjct: 92  -DEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDH 150
Query: 146 KDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGH 205
             D +    FD VV C GHFS P + +  G + + G+ +H+H++R    F+D+ V+L+G 
Sbjct: 151 TTDTIYSAAFDYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGS 210
Query: 206 YASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVERAN----EDGTVVF 261
             S  DI      +  +  I+    A   ++        W  +  ER N    +     F
Sbjct: 211 SYSAEDIGSQCYKYGAKKLISCYRTAPMGYK--------WPENWDERPNLVRVDTENAYF 262
Query: 262 RNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVFPPVL---APGLSFVG 318
            +G     D I+ CTGY +++PFL  + +  V +NR+ PL  +++  V+    P   ++G
Sbjct: 263 ADGSSEKVDAIILCTGYIHHFPFL-NDDLRLVTNNRLWPL--NLYKGVVWEDNPKFFYIG 319
Query: 319 IPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYSK-LEASGKPKRYTHIMD 377
           +  +   F  F+ Q+ +   V+ GR+ LPS++EM  D  A+  K L      + YT+  D
Sbjct: 320 MQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEMKADSMAWREKELTLVTAEEMYTYQGD 379
Query: 378 YPQ-LIEYTDW 387
           Y Q LI+ TD+
Sbjct: 380 YIQNLIDMTDY 390

>pdb|2XVF|A Chain A, Crystal Structure Of Bacterial Flavin-Containing Monooxygenase Length = 464

Iteration: 1
 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 112/372 (30%), Positives = 178/372 (47%), Gaps = 32/372 (8%)
Query: 28  VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVA 87
           +V +EK    GG W YT  T     G+D N  PVHSS Y+ L  N P+E + F  Y F  
Sbjct: 34  LVCFEKQADWGGQWNYTWRT-----GLDENGEPVHSSXYRYLWSNGPKECLEFADYTF-- 86
Query: 88  RNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW---KVKSR 144
            +      +  YP  E +  Y++    + GV + +R +T V +    E ++     V+  
Sbjct: 87  -DEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDH 145
Query: 145 KKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIG 204
             D +  EE FD VV C GHFS P + +  G + + G+ +H+H++R    F+D+ V+L+G
Sbjct: 146 TTDTIYSEE-FDYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVG 204
Query: 205 HYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVERAN----EDGTVV 260
              S  DI      +  +  I+    A        GY   W  +  ER N    +     
Sbjct: 205 SSYSAEDIGSQCYKYGAKKLISCYRTA------PXGY--KWPENWDERPNLVRVDTENAY 256
Query: 261 FRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVFPPVL---APGLSFV 317
           F +G     D I+ CTGY +++PFL  + +  V +NR+ PL  +++  V+    P   ++
Sbjct: 257 FADGSSEKVDAIILCTGYIHHFPFL-NDDLRLVTNNRLWPL--NLYKGVVWEDNPKFFYI 313
Query: 318 GIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYSK-LEASGKPKRYTHIM 376
           G   +   F  F+ Q+ +   V+ GR+ LPS++E   D  A+  K L      + YT+  
Sbjct: 314 GXQDQWYSFNXFDAQAWYARDVIXGRLPLPSKEEXKADSXAWREKELTLVTAEEXYTYQG 373
Query: 377 DYPQ-LIEYTDW 387
           DY Q LI+ TD+
Sbjct: 374 DYIQNLIDXTDY 385

>pdb|2XLP|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen- Activation By Flavin-Containing Monooxygenase: Asn78ser Mutant Length = 461

Iteration: 1
 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 109/371 (29%), Positives = 179/371 (48%), Gaps = 30/371 (8%)
Query: 28  VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVA 87
           +V +EK    GG W YT  T     G+D N  PVHSS+Y+ L  + P+E + F  Y F  
Sbjct: 39  LVCFEKQADWGGQWNYTWRT-----GLDENGEPVHSSMYRYLWSSGPKECLEFADYTF-- 91
Query: 88  RNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE-SNKWKVKSRK- 145
            +      +  YP  E +  Y++    + GV + +R +T V +    E S  + V  +  
Sbjct: 92  -DEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDH 150
Query: 146 KDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGH 205
             D +    FD VV C GHFS P + +  G + + G+ +H+H++R    F+D+ V+L+G 
Sbjct: 151 TTDTIYSAAFDYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGS 210
Query: 206 YASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVERAN----EDGTVVF 261
             S  DI      +  +  I+    A   ++        W  +  ER N    +     F
Sbjct: 211 SYSAEDIGSQCYKYGAKKLISCYRTAPMGYK--------WPENWDERPNLVRVDTENAYF 262
Query: 262 RNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVFPPVL---APGLSFVG 318
            +G     D I+ CTGY +++PFL  + +  V +NR+ PL  +++  V+    P   ++G
Sbjct: 263 ADGSSEKVDAIILCTGYIHHFPFL-NDDLRLVTNNRLWPL--NLYKGVVWEDNPKFFYIG 319
Query: 319 IPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYSK-LEASGKPKRYTHIMD 377
           +  +   F  F+ Q+ +   V+ GR+ LPS++EM  D  A+  K L      + YT+  D
Sbjct: 320 MQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEMKADSMAWREKELTLVTAEEMYTYQGD 379
Query: 378 YPQ-LIEYTDW 387
           Y Q LI+ TD+
Sbjct: 380 YIQNLIDMTDY 390

>pdb|2XLS|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-Activation By Flavin-Containing Monooxygenase: Asn78lys Mutant Length = 461

Iteration: 1
 Score =  146 bits (369), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 109/371 (29%), Positives = 178/371 (47%), Gaps = 30/371 (8%)
Query: 28  VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVA 87
           +V +EK    GG W YT  T     G+D N  PVHSS+Y+ L    P+E + F  Y F  
Sbjct: 39  LVCFEKQADWGGQWNYTWRT-----GLDENGEPVHSSMYRYLWSKGPKECLEFADYTF-- 91
Query: 88  RNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE-SNKWKVKSRK- 145
            +      +  YP  E +  Y++    + GV + +R +T V +    E S  + V  +  
Sbjct: 92  -DEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDH 150
Query: 146 KDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGH 205
             D +    FD VV C GHFS P + +  G + + G+ +H+H++R    F+D+ V+L+G 
Sbjct: 151 TTDTIYSAAFDYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGS 210
Query: 206 YASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVERAN----EDGTVVF 261
             S  DI      +  +  I+    A   ++        W  +  ER N    +     F
Sbjct: 211 SYSAEDIGSQCYKYGAKKLISCYRTAPMGYK--------WPENWDERPNLVRVDTENAYF 262
Query: 262 RNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVFPPVL---APGLSFVG 318
            +G     D I+ CTGY +++PFL  + +  V +NR+ PL  +++  V+    P   ++G
Sbjct: 263 ADGSSEKVDAIILCTGYIHHFPFL-NDDLRLVTNNRLWPL--NLYKGVVWEDNPKFFYIG 319
Query: 319 IPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYSK-LEASGKPKRYTHIMD 377
           +  +   F  F+ Q+ +   V+ GR+ LPS++EM  D  A+  K L      + YT+  D
Sbjct: 320 MQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEMKADSMAWREKELTLVTAEEMYTYQGD 379
Query: 378 YPQ-LIEYTDW 387
           Y Q LI+ TD+
Sbjct: 380 YIQNLIDMTDY 390

>pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To Flavin- Containing Monooxygenases And To Mammalian Dimethylalanine Monooxygenases Length = 457

Iteration: 1
 Score =  135 bits (341), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 115/395 (29%), Positives = 188/395 (47%), Gaps = 52/395 (13%)
Query: 28  VVVYEKGEQVGGSWIYTSETE-------------SDPLGVDPNRYPVHSS-LYKSLRVNL 73
           V ++E+    GG W YTS                ++P+ V P   PV+ S LY+ L+ N 
Sbjct: 36  VTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPI-VGPAALPVYPSPLYRDLQTNT 94
Query: 74  PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARL 133
           P EL G+    F  +  +       +P    +  Y + +A+   +   ++L T+VL+   
Sbjct: 95  PIELXGYCDQSFKPQTLQ-------FPHRHTIQEYQRIYAQP--LLPFIKLATDVLDIE- 144
Query: 134 VESNKWKV--KSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSW----PGKQMHSH 187
            +   W V  K  K    + ++ FDAV +CNGH+ VP +  + G+D +    PG  +HS 
Sbjct: 145 KKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSS 204
Query: 188 NYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLH 247
            +R P  F  + V+++G  +S  D+ R L   AK     S     +         N  L 
Sbjct: 205 LFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDIQ-------NESLQ 257
Query: 248 SMVERANEDGT---VVFRNGRVVS-ADVIMHCTGYKYNYPF-----LETNGIVTVDD-NR 297
            + E    D T   +  + G+V+S  D +++CTGY Y+ PF     L++     +DD + 
Sbjct: 258 QVPEITKFDPTTREIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLKSPETKLIDDGSH 317
Query: 298 VGPLYKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVK 357
           V  +Y+H+F  +  P L+FVG+   V+PFP  + Q+ ++A V SGR+ LPS++E ++   
Sbjct: 318 VHNVYQHIFY-IPDPTLAFVGLALHVVPFPTSQAQAAFLARVWSGRLKLPSKEEQLKWQD 376
Query: 358 AFYSKLEASGKPKRYTHIMDYPQLIEYTDWLAAQC 392
                L  SG    Y H +DYP+   Y + L   C
Sbjct: 377 ELXFSL--SGANNXY-HSLDYPKDATYINKLHDWC 408

>pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo) From S.Pombe And Nadph Cofactor Complex Length = 447

Iteration: 1
 Score =  135 bits (340), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 115/395 (29%), Positives = 188/395 (47%), Gaps = 52/395 (13%)
Query: 28  VVVYEKGEQVGGSWIYTSETE-------------SDPLGVDPNRYPVHSS-LYKSLRVNL 73
           V ++E+    GG W YTS                ++P+ V P   PV+ S LY+ L+ N 
Sbjct: 34  VTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPI-VGPAALPVYPSPLYRDLQTNT 92
Query: 74  PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARL 133
           P EL G+    F  +  +       +P    +  Y + +A+   +   ++L T+VL+   
Sbjct: 93  PIELXGYCDQSFKPQTLQ-------FPHRHTIQEYQRIYAQP--LLPFIKLATDVLDIE- 142
Query: 134 VESNKWKV--KSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSW----PGKQMHSH 187
            +   W V  K  K    + ++ FDAV +CNGH+ VP +  + G+D +    PG  +HS 
Sbjct: 143 KKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSS 202
Query: 188 NYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLH 247
            +R P  F  + V+++G  +S  D+ R L   AK     S     +         N  L 
Sbjct: 203 LFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDIQ-------NESLQ 255
Query: 248 SMVERANEDGT---VVFRNGRVVS-ADVIMHCTGYKYNYPF-----LETNGIVTVDD-NR 297
            + E    D T   +  + G+V+S  D +++CTGY Y+ PF     L++     +DD + 
Sbjct: 256 QVPEITKFDPTTREIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLKSPETKLIDDGSH 315
Query: 298 VGPLYKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVK 357
           V  +Y+H+F  +  P L+FVG+   V+PFP  + Q+ ++A V SGR+ LPS++E ++   
Sbjct: 316 VHNVYQHIFY-IPDPTLAFVGLALHVVPFPTSQAQAAFLARVWSGRLKLPSKEEQLKWQD 374
Query: 358 AFYSKLEASGKPKRYTHIMDYPQLIEYTDWLAAQC 392
                L  SG    Y H +DYP+   Y + L   C
Sbjct: 375 ELXFSL--SGANNXY-HSLDYPKDATYINKLHDWC 406

>pdb|2YLX|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen Activation And Intermediate Stabilization: Asp66ala Mutant In Complex With Nadp And Mes Length = 542

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 87/211 (41%), Gaps = 30/211 (14%)
Query: 22  LRE-GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80
           LRE G +V V E    VGG W +             NRYP      +S+           
Sbjct: 35  LRELGRSVHVIETAGDVGGVWYW-------------NRYPGARCAIESIEY--------- 72
Query: 81  QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE-SNKW 139
             Y F     +      RY    E+LRY+   A +F +   +  HT V  A   E +N W
Sbjct: 73  -CYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTW 131
Query: 140 KVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNY-RIPNPFQDQ 198
            V +   D +        +++ +G  SVP+L   PG+  + G   H+ N+   P  F  Q
Sbjct: 132 TVDTNHGDRIRAR----YLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQ 187
Query: 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRS 229
            V +IG  +SG+ +   +A  A E+ +  R+
Sbjct: 188 RVGVIGTGSSGIQVSPQIAKQAAELFVFQRT 218

>pdb|1W4X|A Chain A, Phenylacetone Monooxygenase, A Baeyer-villiger Monooxygenase Length = 542

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 87/211 (41%), Gaps = 30/211 (14%)
Query: 22  LRE-GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80
           LRE G +V V E    VGG W +             NRYP      +S+           
Sbjct: 35  LRELGRSVHVIETAGDVGGVWYW-------------NRYPGARCDIESIEY--------- 72
Query: 81  QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE-SNKW 139
             Y F     +      RY    E+LRY+   A +F +   +  HT V  A   E +N W
Sbjct: 73  -CYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTW 131
Query: 140 KVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNY-RIPNPFQDQ 198
            V +   D +        +++ +G  SVP+L   PG+  + G   H+ N+   P  F  Q
Sbjct: 132 TVDTNHGDRIRAR----YLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQ 187
Query: 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRS 229
            V +IG  +SG+ +   +A  A E+ +  R+
Sbjct: 188 RVGVIGTGSSGIQVSPQIAKQAAELFVFQRT 218

>pdb|2YLW|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen Activation And Intermediate Stabilization: Arg337lys Mutant In Complex With Mes Length = 542

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 87/211 (41%), Gaps = 30/211 (14%)
Query: 22  LRE-GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80
           LRE G +V V E    VGG W +             NRYP      +S+           
Sbjct: 35  LRELGRSVHVIETAGDVGGVWYW-------------NRYPGARCDIESIEY--------- 72
Query: 81  QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE-SNKW 139
             Y F     +      RY    E+LRY+   A +F +   +  HT V  A   E +N W
Sbjct: 73  -CYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTW 131
Query: 140 KVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNY-RIPNPFQDQ 198
            V +   D +        +++ +G  SVP+L   PG+  + G   H+ N+   P  F  Q
Sbjct: 132 TVDTNHGDRIRAR----YLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQ 187
Query: 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRS 229
            V +IG  +SG+ +   +A  A E+ +  R+
Sbjct: 188 RVGVIGTGSSGIQVSPQIAKQAAELFVFQRT 218

>pdb|2YLZ|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen Activation And Intermediate Stabilization: Met446gly Mutant Length = 542

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 87/211 (41%), Gaps = 30/211 (14%)
Query: 22  LRE-GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF 80
           LRE G +V V E    VGG W +             NRYP      +S+           
Sbjct: 35  LRELGRSVHVIETAGDVGGVWYW-------------NRYPGARCDIESIEY--------- 72
Query: 81  QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE-SNKW 139
             Y F     +      RY    E+LRY+   A +F +   +  HT V  A   E +N W
Sbjct: 73  -CYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTW 131
Query: 140 KVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNY-RIPNPFQDQ 198
            V +   D +        +++ +G  SVP+L   PG+  + G   H+ N+   P  F  Q
Sbjct: 132 TVDTNHGDRIRAR----YLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQ 187
Query: 199 VVILIGHYASGLDIKRDLAGFAKEVHIASRS 229
            V +IG  +SG+ +   +A  A E+ +  R+
Sbjct: 188 RVGVIGTGSSGIQVSPQIAKQAAELFVFQRT 218

>pdb|3UOV|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 1) Length = 545

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 94/213 (44%), Gaps = 35/213 (16%)
Query: 25  GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYP 84
           G  V+  E GE VGG+W +             NRYP         R++      G+ A  
Sbjct: 32  GMKVLGIEAGEDVGGTWYW-------------NRYP-------GCRLDTESYAYGYFALK 71
Query: 85  FVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKS 143
            +   +E S +    P   E+LRY+   A    V +  R +T V  AR VE+++ W+V +
Sbjct: 72  GIIPEWEWSENFASQP---EMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEV-T 127
Query: 144 RKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNP-------FQ 196
              ++VV   T   ++   G  S  R+  + GIDS+ G+  HS  +            F 
Sbjct: 128 LDNEEVV---TCRFLISATGPLSASRMPDIKGIDSFKGESFHSSRWPTDAEGAPKGVDFT 184
Query: 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRS 229
            + V +IG  A+G+ I    A  AKE+++  R+
Sbjct: 185 GKRVGVIGTGATGVQIIPIAAETAKELYVFQRT 217

>pdb|4AP3|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp Length = 549

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 91/216 (42%), Gaps = 33/216 (15%)
Query: 19  HELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78
           H    +G TV  +E    VGG W +             NRYP         R ++     
Sbjct: 38  HRFRSQGLTVRAFEAASGVGGVWYW-------------NRYP-------GARCDVESIDY 77
Query: 79  GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN- 137
            +   P + + +  S    +Y    E+L YL++ A  F + + +R  T V +A L E   
Sbjct: 78  SYSFSPELEQEWNWS---EKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGL 134
Query: 138 KWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN---P 194
           +W V++ + D+V    +   +VV  G  S        G+D + G  +H+   R P+    
Sbjct: 135 RWTVRTDRGDEV----SARFLVVAAGPLSNANTPAFDGLDRFTGDIVHTA--RWPHDGVD 188
Query: 195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230
           F  + V +IG  +SG+     +A  A+++ +  RS 
Sbjct: 189 FTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSA 224

>pdb|4AOS|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp Length = 549

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 91/216 (42%), Gaps = 33/216 (15%)
Query: 19  HELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78
           H    +G TV  +E    VGG W +             NRYP         R ++     
Sbjct: 38  HRFRSQGLTVRAFEAASGVGGVWYW-------------NRYP-------GARCDVESIDY 77
Query: 79  GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN- 137
            +   P + + +  S    +Y    E+L YL++ A  F + + +R  T V +A L E   
Sbjct: 78  SYSFSPELEQEWNWS---EKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGL 134
Query: 138 KWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN---P 194
           +W V++ + D+V    +   +VV  G  S        G+D + G  +H+   R P+    
Sbjct: 135 RWTVRTDRGDEV----SARFLVVAAGPLSNANTPAFDGLDRFTGDIVHTA--RWPHDGVD 188
Query: 195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230
           F  + V +IG  +SG+     +A  A+++ +  RS 
Sbjct: 189 FTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSA 224

>pdb|4AP1|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp Length = 549

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 91/216 (42%), Gaps = 33/216 (15%)
Query: 19  HELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM 78
           H    +G TV  +E    VGG W +             NRYP         R ++     
Sbjct: 38  HRFRSQGLTVRAFEAASGVGGVWYW-------------NRYP-------GARCDVESIDY 77
Query: 79  GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN- 137
            +   P + + +  S    +Y    E+L YL++ A  F + + +R  T V +A L E   
Sbjct: 78  SYSFSPELEQEWNWS---EKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGL 134
Query: 138 KWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN---P 194
           +W V++ + D+V    +   +VV  G  S        G+D + G  +H+   R P+    
Sbjct: 135 RWTVRTDRGDEV----SARFLVVAAGPLSNANTPAFDGLDRFTGDIVHTA--RWPHDGVD 188
Query: 195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV 230
           F  + V +IG  +SG+     +A  A+++ +  RS 
Sbjct: 189 FTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSA 224

>pdb|3UCL|A Chain A, Cyclohexanone-Bound Crystal Structure Of Cyclohexanone Monooxygenase In The Rotated Conformation Length = 573

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 85/207 (41%), Gaps = 45/207 (21%)
Query: 19  HELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYP-----VHSSLYKSLRVNL 73
           HEL   G T V ++K +  GG+W +             NRYP       S LY   R + 
Sbjct: 62  HEL---GLTTVGFDKADGPGGTWYW-------------NRYPGALSDTESHLY---RFSF 102
Query: 74  PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNAR- 132
            R+L+            + S     Y    E+L YL++    F + +  +  TEV +A  
Sbjct: 103 DRDLL------------QESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALY 150
Query: 133 LVESNKWKVKSRKKDDVVEEETFDAVVVCN--GHFSVPRLAQVPGIDSWPGKQMHSHNYR 190
           L + N W+V +         E + A  V N  G  S      +PG+D++ G+ +H+  + 
Sbjct: 151 LDDENLWEVTTDHG------EVYRAKYVVNAVGLLSAINFPNLPGLDTFEGETIHTAAWP 204
Query: 191 IPNPFQDQVVILIGHYASGLDIKRDLA 217
                  + V +IG  ++G  +   LA
Sbjct: 205 EGKSLAGRRVGVIGTGSTGQQVITSLA 231

>pdb|3GWD|A Chain A, Closed Crystal Structure Of Cyclohexanone Monooxygenase Length = 540

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 85/207 (41%), Gaps = 45/207 (21%)
Query: 19  HELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYP-----VHSSLYKSLRVNL 73
           HEL   G T V ++K +  GG+W +             NRYP       S LY   R + 
Sbjct: 29  HEL---GLTTVGFDKADGPGGTWYW-------------NRYPGALSDTESHLY---RFSF 69
Query: 74  PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNAR- 132
            R+L+            + S     Y    E+L YL++    F + +  +  TEV +A  
Sbjct: 70  DRDLL------------QESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALY 117
Query: 133 LVESNKWKVKSRKKDDVVEEETFDAVVVCN--GHFSVPRLAQVPGIDSWPGKQMHSHNYR 190
           L + N W+V +         E + A  V N  G  S      +PG+D++ G+ +H+  + 
Sbjct: 118 LDDENLWEVTTDHG------EVYRAKYVVNAVGLLSAINFPNLPGLDTFEGETIHTAAWP 171
Query: 191 IPNPFQDQVVILIGHYASGLDIKRDLA 217
                  + V +IG  ++G  +   LA
Sbjct: 172 EGKSLAGRRVGVIGTGSTGQQVITSLA 198

>pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas Maltophilia Length = 357

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 64/164 (39%), Gaps = 28/164 (17%)
Query: 99  YPGHEEVLRYLQNFAREFGVD-------QVVRLHTEVLNARLVESNKWKVKSRKKDDVVE 151
           YP   EVL YL  + +++ +        Q V    E L     +  +W  +         
Sbjct: 72  YPARAEVLAYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGRQWLAR--------- 122
Query: 152 EETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLD 211
                AV+   G +      +  G++S+ G Q+HS +Y  P PF    V +IG   SG  
Sbjct: 123 -----AVISATGTWGEAYTPEYQGLESFAGIQLHSAHYSTPAPFAGMRVAIIGGGNSGAQ 177
Query: 212 IKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVERANE 255
           I  +++  A+   I         HE     D++    + ERA E
Sbjct: 178 ILAEVSTVAETTWITQ-------HEPAFLADDVDGRVLFERATE 214

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	446
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	1e-136
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	1e-134
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	7e-57
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	8e-39
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	6e-29
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	2e-28
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	2e-27
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	4e-27
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	1e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-11
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	4e-10
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	7e-10
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	1e-09
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	2e-09
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	2e-09
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	6e-09
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	1e-08
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	2e-08
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	2e-08
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	2e-08
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	3e-08
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	3e-08
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	4e-08
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	6e-08
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	7e-08
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	3e-07
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	4e-07
3utf_A	513	UDP-galactopyranose mutase; nucleotide binding, fl	7e-07
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	1e-06
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	1e-06
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	2e-06
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	2e-06
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	2e-06
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	2e-06
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	2e-06
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	3e-06
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	3e-06
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	3e-06
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	3e-06
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	3e-06
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	4e-06
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	6e-06
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	6e-06
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	8e-06
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	1e-05
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	1e-05
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	1e-05
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	1e-05
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	2e-05
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	2e-05
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	2e-05
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	2e-05
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	2e-05
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	3e-05
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	3e-05
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	3e-05
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	4e-05
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	4e-05
3dme_A	369	Conserved exported protein; structural genomics, P	6e-05
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	8e-05
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	1e-04
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	1e-04
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	1e-04
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	1e-04
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	2e-04
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	2e-04
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	2e-04
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	2e-04
3atr_A	453	Conserved archaeal protein; saturating double bond	2e-04
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	2e-04
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	2e-04
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	2e-04
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	3e-04
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	3e-04
4fk1_A	304	Putative thioredoxin reductase; structural genomic	5e-04
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	5e-04
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	8e-04

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* Length = 464

 Score =  398 bits (1024), Expect = e-136
 Identities = 111/433 (25%), Positives = 184/433 (42%), Gaps = 27/433 (6%)

Query: 1   MFRHVAVIGAGAAGLVVGHELL------REGHTVVVYEKGEQVGGSWIYTSETESDPLGV 54
           M   +A++GAG +G+              E   +V +EK    GG W YT        G+
Sbjct: 1   MATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYT-----WRTGL 55

Query: 55  DPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAR 114
           D N  PVHSS+Y+ L  N P+E + F  Y F          +  YP  E +  Y++    
Sbjct: 56  DENGEPVHSSMYRYLWSNGPKECLEFADYTFDE---HFGKPIASYPPREVLWDYIKGRVE 112

Query: 115 EFGVDQVVRLHTEVLNARLVE-SNKWKVKSR-KKDDVVEEETFDAVVVCNGHFSVPRLAQ 172
           + GV + +R +T V +    E S  + V  +    D +  E FD VV C GHFS P + +
Sbjct: 113 KAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCTGHFSTPYVPE 172

Query: 173 VPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD 232
             G + + G+ +H+H++R    F+D+ V+L+G   S  DI      +  +  I+    A 
Sbjct: 173 FEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAP 232

Query: 233 ETHEKQPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVT 292
             ++    +D       V    +     F +G     D I+ CTGY +++PFL  +  + 
Sbjct: 233 MGYKWPENWDERPNLVRV----DTENAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRLV 288

Query: 293 VDDN-RVGPLYKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDE 351
            ++      LYK V      P   ++G+  +   F  F+ Q+ +   V+ GR+ LPS++E
Sbjct: 289 TNNRLWPLNLYKGVVWE-DNPKFFYIGMQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEE 347

Query: 352 MMEDVKAFYSKLEASGKPKRYTHIMDYPQLIEYTDWLAAQCNCQGYEEWRKQMAYSAFKN 411
           M  D  A+  K          T    Y    +Y   L    +   ++       +  +K+
Sbjct: 348 MKADSMAWREKEL-----TLVTAEEMYTYQGDYIQNLIDMTDYPSFDIPATNKTFLEWKH 402

Query: 412 AFITRPGTYRDEW 424
                  T+RD  
Sbjct: 403 HKKENIMTFRDHS 415

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* Length = 447

 Score =  393 bits (1012), Expect = e-134
 Identities = 115/453 (25%), Positives = 198/453 (43%), Gaps = 50/453 (11%)

Query: 3   RHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETE------------ 48
           R +A+IGAG +GLV    LL E     V ++E+    GG W YTS               
Sbjct: 7   RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPIL 66

Query: 49  -SDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLR 107
            ++P+          S LY+ L+ N P ELMG+    F            ++P    +  
Sbjct: 67  TTEPIVGPAALPVYPSPLYRDLQTNTPIELMGYCDQSFKP-------QTLQFPHRHTIQE 119

Query: 108 YLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSR--KKDDVVEEETFDAVVVCNGHF 165
           Y + +A+   +   ++L T+VL+    +   W V  +  K    + ++ FDAV +CNGH+
Sbjct: 120 YQRIYAQ--PLLPFIKLATDVLDIEK-KDGSWVVTYKGTKAGSPISKDIFDAVSICNGHY 176

Query: 166 SVPRLAQVPGIDSW----PGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAK 221
            VP +  + G+D +    PG  +HS  +R P  F  + V+++G  +S  D+ R L   AK
Sbjct: 177 EVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAK 236

Query: 222 EVHIASRSVADETHEKQPGYDNMWLHSMVERANEDGTVVFRNGRVVSA--DVIMHCTGYK 279
                S     +        +++     + + +     ++  G  V +  D +++CTGY 
Sbjct: 237 HPIYQSLLGGGDIQ-----NESLQQVPEITKFDPTTREIYLKGGKVLSNIDRVIYCTGYL 291

Query: 280 YNYPFLE------TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVIPFPFFELQS 333
           Y+ PF            +  D + V  +Y+H+F     P L+FVG+   V+PFP  + Q+
Sbjct: 292 YSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYI-PDPTLAFVGLALHVVPFPTSQAQA 350

Query: 334 KWIASVLSGRIVLPSQDEMMEDVKAFYSKLEASGKPKRYTHIMDYPQLIEYTDWLAAQCN 393
            ++A V SGR+ LPS++E ++        L  +       H +DYP+   Y + L   C 
Sbjct: 351 AFLARVWSGRLKLPSKEEQLKWQDELMFSLSGAN---NMYHSLDYPKDATYINKLHDWCK 407

Query: 394 CQ--GYEEWRKQMAYSAFKNAFITRPGTYRDEW 424
                 EE      +   + +      + R ++
Sbjct: 408 QATPVLEEEFPSPYWGEKERSIRENMWSIRAKF 440

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score =  190 bits (485), Expect = 7e-57
 Identities = 65/357 (18%), Positives = 115/357 (32%), Gaps = 78/357 (21%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS 64
           V VIG G +GL  G+ L R G + V+ +     GG+W               + +     
Sbjct: 6   VVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAW--------------QHAWH---- 47

Query: 65  LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRL 124
              SL +  P        +P  A           YP   EVL YL  + +++ +   V  
Sbjct: 48  ---SLHLFSPAGWSSIPGWPMPA-------SQGPYPARAEVLAYLAQYEQKYALP--VLR 95

Query: 125 HTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQM 184
              V         + +V +R       +    AV+   G +      +  G++S+ G Q+
Sbjct: 96  PIRVQRVSHFG-ERLRVVARDG----RQWLARAVISATGTWGEAYTPEYQGLESFAGIQL 150

Query: 185 HSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA------------- 231
           HS +Y  P PF    V +IG   SG  I  +++  A+   I     A             
Sbjct: 151 HSAHYSTPAPFAGMRVAIIGGGNSGAQILAEVSTVAETTWITQHEPAFLADDVDGRVLFE 210

Query: 232 -------DETHEKQPGYDNMWL--------------------HSMVERANEDGTVVFRNG 264
                   +   ++P                                R +  G + + +G
Sbjct: 211 RATERWKAQQEGREPDLPPGGFGDIVMVPPVLDARARGVLAAVPPPARFSPTG-MQWADG 269

Query: 265 RVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQ 321
              + D ++ CTG++     L+   +  V       +       +  P +  +G   
Sbjct: 270 TERAFDAVIWCTGFRPALSHLKGLDL--VTPQGQVEVDGSGLRALAVPSVWLLGYGD 324

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369

 Score =  143 bits (361), Expect = 8e-39
 Identities = 66/388 (17%), Positives = 120/388 (30%), Gaps = 76/388 (19%)

Query: 5   VAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH- 62
           VA+IGAGAAG+ +   L   G   V++ EKG  VG S+                 +P   
Sbjct: 7   VAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFK---------------HWPKST 50

Query: 63  ----SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGV 118
                S   +         +     P    N         +   E    YLQ  A  + +
Sbjct: 51  RTITPSFTSNGFGMPDMNAISMDTSPAFTFN-------EEHISGETYAEYLQVVANHYEL 103

Query: 119 DQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDS 178
           +  +  +T V N    +   + + +       E    D + V  G ++ P+     GI  
Sbjct: 104 N--IFENTVVTNISADD-AYYTIATTT-----ETYHADYIFVATGDYNFPKKPFKYGI-- 153

Query: 179 WPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQ 238
                 H       + F     ++IG   SG D    LA    ++ + + +      +  
Sbjct: 154 ------HYSEIEDFDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDAD 207

Query: 239 PGYD---------------------NMWLHSMVERANEDG-TVVFRNGRVV-SADVIMHC 275
           P                        N+         N     + F +G+ V +    +  
Sbjct: 208 PSVRLSPYTRQRLGNVIKQGARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILA 267

Query: 276 TGYKYNYPFLETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVIPFPF-----FE 330
           TG+      +     VT +                 P +  +G   +           F 
Sbjct: 268 TGFDATKNPIVQQLFVTTNQ---DIKLTTHDESTRYPNIFMIGATVENDNAKLCYIYKFR 324

Query: 331 LQSKWIASVLSGRIVLPSQDEMMEDVKA 358
            +   +A +L+ R  LP++ E++E+ + 
Sbjct: 325 ARFAVLAHLLTQREGLPAKQEVIENYQK 352

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* Length = 545

 Score =  118 bits (297), Expect = 6e-29
 Identities = 57/218 (26%), Positives = 84/218 (38%), Gaps = 45/218 (20%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYP---- 60
             VIGAG  G+     + + G  V+  E GE VGG+W +             NRYP    
Sbjct: 12  AVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYW-------------NRYPGCRL 58

Query: 61  -VHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVD 119
              S  Y            G+ A   +   +E S     +    E+LRY+   A    V 
Sbjct: 59  DTESYAY------------GYFALKGIIPEWEWS---ENFASQPEMLRYVNRAADAMDVR 103

Query: 120 QVVRLHTEVLNARLVE-SNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDS 178
           +  R +T V  AR VE    W+V    ++      T   ++   G  S  R+  + GIDS
Sbjct: 104 KHYRFNTRVTAARYVENDRLWEVTLDNEE----VVTCRFLISATGPLSASRMPDIKGIDS 159

Query: 179 WPGKQMHS----HNYRIPNP---FQDQVVILIGHYASG 209
           + G+  HS     +         F  + V +IG  A+G
Sbjct: 160 FKGESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATG 197

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* Length = 549

 Score =  116 bits (294), Expect = 2e-28
 Identities = 51/188 (27%), Positives = 76/188 (40%), Gaps = 38/188 (20%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYP---- 60
           V V+GAG AGL   H    +G TV  +E    VGG W +             NRYP    
Sbjct: 24  VVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYW-------------NRYPGARC 70

Query: 61  -VHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVD 119
            V S  Y               +Y F     +      +Y    E+L YL++ A  F + 
Sbjct: 71  DVESIDY---------------SYSFSPELEQEWNWSEKYATQPEILAYLEHVADRFDLR 115

Query: 120 QVVRLHTEVLNARLVE-SNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDS 178
           + +R  T V +A L E   +W V++ + D+V    +   +VV  G  S        G+D 
Sbjct: 116 RDIRFDTRVTSAVLDEEGLRWTVRTDRGDEV----SARFLVVAAGPLSNANTPAFDGLDR 171

Query: 179 WPGKQMHS 186
           + G  +H+
Sbjct: 172 FTGDIVHT 179

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* Length = 542

 Score =  113 bits (286), Expect = 2e-27
 Identities = 51/191 (26%), Positives = 76/191 (39%), Gaps = 44/191 (23%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYP---- 60
           V V+GAG +GL   + L   G +V V E    VGG W +             NRYP    
Sbjct: 19  VLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYW-------------NRYPGARC 65

Query: 61  -VHSSLYKSLRVNLPRELMGFQAYPF---VARNYEGSVDLRRYPGHEEVLRYLQNFAREF 116
            + S  Y                Y F   V + +  +    RY    E+LRY+   A +F
Sbjct: 66  DIESIEY---------------CYSFSEEVLQEWNWT---ERYASQPEILRYINFVADKF 107

Query: 117 GVDQVVRLHTEVLNARLVE-SNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPG 175
            +   +  HT V  A   E +N W V +   D +        +++ +G  SVP+L   PG
Sbjct: 108 DLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRI----RARYLIMASGQLSVPQLPNFPG 163

Query: 176 IDSWPGKQMHS 186
           +  + G   H+
Sbjct: 164 LKDFAGNLYHT 174

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* Length = 540

 Score =  113 bits (284), Expect = 4e-27
 Identities = 53/217 (24%), Positives = 83/217 (38%), Gaps = 49/217 (22%)

Query: 5   VAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYP--- 60
             VIGAG  G+   H+L  E G T V ++K +  GG+W Y             NRYP   
Sbjct: 11  AVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTW-YW------------NRYPGAL 57

Query: 61  --VHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVD-LRRYPGHEEVLRYLQNFAREFG 117
               S LY                + F  R+          Y    E+L YL++    F 
Sbjct: 58  SDTESHLY---------------RFSF-DRDLLQESTWKTTYITQPEILEYLEDVVDRFD 101

Query: 118 VDQVVRLHTEVLNARLVE-SNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGI 176
           + +  +  TEV +A  ++  N W+V +       E      VV   G  S      +PG+
Sbjct: 102 LRRHFKFGTEVTSALYLDDENLWEVTTDHG----EVYRAKYVVNAVGLLSAINFPNLPGL 157

Query: 177 DSWPGKQMHS----HNYRIPNPFQDQVVILIGHYASG 209
           D++ G+ +H+               + V +IG  ++G
Sbjct: 158 DTFEGETIHTAAWPEGK----SLAGRRVGVIGTGSTG 190

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* Length = 463

 Score = 71.6 bits (175), Expect = 1e-13
 Identities = 47/243 (19%), Positives = 75/243 (30%), Gaps = 32/243 (13%)

Query: 5   VAVIGAGAAGLVVGHELLREGH-----TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRY 59
           +  +G G + + +   L           V+  +K       W   +      L +     
Sbjct: 33  LIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYR--WHGNTLVSQSELQI----- 85

Query: 60  PVHSSLYKSLRVNLPRELMGFQAYPFVA-RNYEGSVDLRRYPGHEEVLRYLQNFAREFGV 118
              S L   + +  P     F  Y     R  +       YP   E   YL+  A  F  
Sbjct: 86  ---SFLKDLVSLRNPTSPYSFVNYLHKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQE 142

Query: 119 DQVVRLHTEVLNARLVESN----KWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVP 174
               R   EVL    + S       +V SR  D      T  A+VV  G    PR+ QV 
Sbjct: 143 Q--SRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPG--GTPRIPQVF 198

Query: 175 GIDSWPGKQMHSHNY------RIPNPFQDQVVILIGHYASGLDIKRDLA--GFAKEVHIA 226
                 G+  H   Y      +  +  +   + +IG   S  +   DL     + +  + 
Sbjct: 199 RALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMI 258

Query: 227 SRS 229
            R+
Sbjct: 259 LRA 261

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.1 bits (155), Expect = 5e-11
 Identities = 69/486 (14%), Positives = 130/486 (26%), Gaps = 152/486 (31%)

Query: 21  LLREGHTVV--VYEKGEQVGGSWIYTS---------------ETESDPLGVDPNRYPVHS 63
           LL +   +V    E+  ++   ++ +                  + D L  D   +  ++
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130

Query: 64  ----SLYKSLRVNLPREL----------M-GF----------QAYPFVARNYEGS--VDL 96
                 Y  LR  L  EL          + G            +Y    +       ++L
Sbjct: 131 VSRLQPYLKLRQAL-LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189

Query: 97  RRYPGHEEVLRYLQNFAREFGVDQV--------VRLHTEVLNARLVESNKWKVKSRKK-- 146
           +     E VL  LQ    +   +          ++L    + A L      K K  +   
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL--RRLLKSKPYENCL 247

Query: 147 ---DDVVEEETFDAVVVCNGHFSVP-------RLAQVPGIDSWPGKQMHSHNYRIPNPFQ 196
               +V   + ++A       F++        R  QV   D                   
Sbjct: 248 LVLLNVQNAKAWNA-------FNLSCKILLTTRFKQV--TDFLSAATT------------ 286

Query: 197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVERANED 256
               I + H++  L      +   K +    + +  E     P        S++  +  D
Sbjct: 287 --THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP-----RRLSIIAESIRD 339

Query: 257 GTVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKH--VFPPVLAPGL 314
           G   + N + V+ D +        N   LE        + R   ++    VFPP      
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNV--LEP------AEYR--KMFDRLSVFPPS----- 384

Query: 315 SFVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYSKLEASGKPKRYT- 373
               IP  +       L   W             + ++M  V   +       +PK  T 
Sbjct: 385 --AHIPTIL-------LSLIWFDV---------IKSDVMVVVNKLHKYSLVEKQPKESTI 426

Query: 374 HIMDYPQLIEYTDWLAAQCNCQGYEEWRKQM--AYSAFKNAFITRPGTYRDEWDDE---- 427
            I           +L  +   +      + +   Y+  K             + D+    
Sbjct: 427 SIPSI--------YLELKVKLENEYALHRSIVDHYNIPKTFD---SDDLIPPYLDQYFYS 475

Query: 428 ----HL 429
               HL
Sbjct: 476 HIGHHL 481

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504

 Score = 60.9 bits (147), Expect = 4e-10
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 3  RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETE 48
          + VAVIGAG +GL   ++L   G  V V+E   + GG  + +   +
Sbjct: 14 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGG-KLRSVSQD 58

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671

 Score = 60.0 bits (146), Expect = 7e-10
 Identities = 40/234 (17%), Positives = 67/234 (28%), Gaps = 80/234 (34%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
           +++AV+GAG AGL         GH V +++   ++GG +              P +    
Sbjct: 374 KNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAK--------QIPGK---- 421

Query: 63  SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
                        E                             LRY +      GV   +
Sbjct: 422 ------------EEFYET-------------------------LRYYRRMIEVTGVT--L 442

Query: 123 RLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDS---W 179
           +L+  V                      + + FD  ++ +G   VPR   + GID     
Sbjct: 443 KLNHTV-------------------TADQLQAFDETILASG--IVPRTPPIDGIDHPKVL 481

Query: 180 PGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADE 233
               +         P  ++V I IG    G D    L+   +          +E
Sbjct: 482 SYLDVLRD----KAPVGNKVAI-IGCGGIGFDTAMYLSQPGESTSQNIAGFCNE 530

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478

 Score = 59.2 bits (143), Expect = 1e-09
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 3  RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPL 52
           +VAV+G G +GL V H L   G   V+ E   ++GG  + T       +
Sbjct: 17 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGG-AVGTHALAGYLV 65

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Length = 477

 Score = 58.6 bits (141), Expect = 2e-09
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 1  MFRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETE 48
          M R V V+G G +GL   + L R      VV+ E  E++GG WI +    
Sbjct: 1  MGRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGG-WIRSVRGP 49

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424

 Score = 58.0 bits (140), Expect = 2e-09
 Identities = 23/116 (19%), Positives = 36/116 (31%), Gaps = 4/116 (3%)

Query: 3   RHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGG-SWIYTSETESDPLGVD--PNR 58
             +A+IGAG AGL  G  L + G H   + E+ + VGG             +G       
Sbjct: 7   SRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNYHGRRYEMGAIMGVPS 66

Query: 59  YPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAR 114
           Y     +       +    +  +        Y    D  R P     ++ L     
Sbjct: 67  YDTIQEIMDRTGDKVDGPKLRREFLHEDGEIYVPEKDPVRGPQVMAAVQKLGQLLA 122

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 43/280 (15%), Positives = 75/280 (26%), Gaps = 83/280 (29%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
             V ++GAG +G      L+  G+TV + +  E++GG     +          P      
Sbjct: 390 DSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVA--------ALPGL---- 437

Query: 63  SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVV 122
                        E                               Y +         Q+ 
Sbjct: 438 ------------GEWSYH-------------------------RDYRET--------QIT 452

Query: 123 RLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQ--------VP 174
           +L  +   ++L    K         D V +   D V++  G  +              +P
Sbjct: 453 KLLKKNKESQLALGQKPMTA-----DDVLQYGADKVIIATG--ARWNTDGTNCLTHDPIP 505

Query: 175 GIDSWPGKQMHSHN-YRIPNPFQDQVVIL-IGHYASGLDIKRDLAGFAKEVHIASRSVAD 232
           G D+    Q+              +VVIL    Y     +   LA    EV I       
Sbjct: 506 GADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIV------ 559

Query: 233 ETHEKQPGYDNMWLH--SMVERANEDGTVVFRNGRVVSAD 270
            +      Y +  L   +M+ R +E       +      +
Sbjct: 560 -SGVHLANYMHFTLEYPNMMRRLHELHVEELGDHFCSRIE 598

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475

 Score = 55.4 bits (133), Expect = 2e-08
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 3  RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETE 48
          + + ++G G  GL   +   R      + + E GE++GG  + T   +
Sbjct: 5  KRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGG-KVATYRED 51

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 49/303 (16%), Positives = 75/303 (24%), Gaps = 97/303 (32%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
             V V+GAG +GL     L   G+ VV+ E G  +GG                       
Sbjct: 392 ARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGG----------------------- 428

Query: 63  SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQN-FAREFGVDQV 121
                  RV                    G     R      V  Y +   A    V+  
Sbjct: 429 -------RVTQ-------------ESALPGLSAWGR------VKEYREAVLAELPNVE-- 460

Query: 122 VRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPG 181
           +   + +                   D + E  F+ V+   G  +  R   V    +   
Sbjct: 461 IYRESPM-----------------TGDDIVEFGFEHVITATG--ATWRTDGVARFHTTAL 501

Query: 182 KQMHSHN-------YRIPNPFQDQVVIL-IGHYASGLDIKRDLAGFAKEVHIASRSVADE 233
                         +    P   +VV+    HY  G  +   LA    EV I +      
Sbjct: 502 PIAEGMQVLGPDDLFAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVS 561

Query: 234 THEKQPGYDNMWLHSM------------VERANEDGTVVFRNG-----RVVSADVIMHCT 276
           +        N     +            V      G V  R+      R +  D ++  T
Sbjct: 562 SWTNNTFEVNRIQRRLIENGVARVTDHAVVAVGAGG-VTVRDTYASIERELECDAVVMVT 620

Query: 277 GYK 279
              
Sbjct: 621 ARL 623

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Length = 376

 Score = 55.0 bits (131), Expect = 2e-08
 Identities = 33/142 (23%), Positives = 51/142 (35%), Gaps = 12/142 (8%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYE-KGEQVGG-SWIYTSETESDPLGVDPN--- 57
           + + ++GAG AGLV G  L R GH V + E    +VGG    + ++        DP    
Sbjct: 45  KRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKKGEPSPFADPAQYA 104

Query: 58  -----RYPVHSSLYKSL--RVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQ 110
                R P    L  +L  ++ L R L           N +  V    Y   ++   +  
Sbjct: 105 EAGAMRLPSFHPLTLALIDKLGLKRRLFFNVDIDPQTGNQDAPVPPVFYKSFKDGKTWTN 164

Query: 111 NFAREFGVDQVVRLHTEVLNAR 132
                   +   R HT +   R
Sbjct: 165 GAPSPEFKEPDKRNHTWIRTNR 186

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470

 Score = 54.6 bits (131), Expect = 3e-08
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 7/52 (13%)

Query: 3  RHVAVIGAGAAGLVVGHELLRE------GHTVVVYEKGEQVGGSWIYTSETE 48
          +HV +IG G  GL     + +E         + + E   +VGG  I T + +
Sbjct: 6  KHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGG-KIQTVKKD 56

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 16/35 (45%), Positives = 21/35 (60%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
            V+GAG  GL+ G  L R GH ++V EK   +GG
Sbjct: 3  AVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGG 37

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512

 Score = 54.2 bits (130), Expect = 4e-08
 Identities = 35/186 (18%), Positives = 61/186 (32%), Gaps = 18/186 (9%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKG----EQVGGSWI-YTSETESDPLGVDPNRY 59
           + VIG G  G  +   +   GH V++ E+      Q+G S +  T       LG+     
Sbjct: 10  LIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMK 69

Query: 60  PVHSSLYKSLRVNLPRE----LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE 115
                + +       +E      GF  +P     +   V+ R           L   +  
Sbjct: 70  RAGFPIKRGGTFRWGKEPEPWTFGFTRHPDDPYGFAYQVE-RA-----RFDDMLLRNSER 123

Query: 116 FGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFS-VPRLAQVP 174
            GVD  VR   EV++          V+ R  + V        +V  +G+ + V +     
Sbjct: 124 KGVD--VRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIVDASGNRTRVSQAVGER 181

Query: 175 GIDSWP 180
               + 
Sbjct: 182 VYSRFF 187

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Length = 498

 Score = 53.7 bits (129), Expect = 6e-08
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 3  RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVD--PNRYP 60
          +HV ++GAG AGL   + L   GH V V E  E+ GG  + T   E      +  P R P
Sbjct: 34 KHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGR-VRTYRNEEAGWYANLGPMRLP 92

Query: 61 VH 62
            
Sbjct: 93 EK 94

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456

 Score = 53.3 bits (129), Expect = 7e-08
 Identities = 17/35 (48%), Positives = 24/35 (68%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
           V VIGAG AGL    EL  +G+ V VY++ +++GG
Sbjct: 125 VGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGG 159

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484

 Score = 51.4 bits (122), Expect = 3e-07
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 1  MFRHVAVIGAGAAGLVVGHELLREGHT-VVVYEKGEQVGGSWIYTSETE 48
          +   + +IGAG  GL     L   G+    +YE  +  GG    +   E
Sbjct: 8  LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGG-LSRSFLDE 55

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Length = 489

 Score = 51.4 bits (123), Expect = 4e-07
 Identities = 47/299 (15%), Positives = 82/299 (27%), Gaps = 48/299 (16%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYE----------------KGEQVGGSWIYTSE 46
             V V+G G AGL    EL + G+ V V E                +   + G     + 
Sbjct: 12  HSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWTARGGSEETDLSGETQKCTF 71

Query: 47  TESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVL 106
           +E     V   R P              REL G +   F  +N    V+ +         
Sbjct: 72  SEGHFYNVGATRIPQSHITLD-----YCREL-GVEIQGFGNQNANTFVNYQSDT------ 119

Query: 107 RYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFS 166
                             +   L  +  +         ++D    ++     +   G  S
Sbjct: 120 SLSGQSVTYRAAKADTFGYMSELLKKATDQGALDQVLSRED----KDALSEFLSDFGDLS 175

Query: 167 VPRLAQVP---GIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEV 223
                      G DS PG  ++    + P   Q+   ++                     
Sbjct: 176 DDGRYLGSSRRGYDSEPGAGLNFGTEKKPFAMQE---VIRSGIGRNFSFDFGYDQAMMMF 232

Query: 224 HIA--SRSVADETHEKQPGYDNMWLHSMVER--ANEDG-TVVFRNG---RVVSAD-VIM 273
                   +     + + G DN+   + V       +G TV +  G   + ++AD  I 
Sbjct: 233 TPVGGMDRIY-YAFQDRIGTDNIVFGAEVTSMKNVSEGVTVEYTAGGSKKSITADYAIC 290

>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513

 Score = 50.3 bits (119), Expect = 7e-07
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 1  MFRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQVGGSWIYTSETE 48
          +   V VIGAG  GL     L +  G + ++ +  E  GG    T  T 
Sbjct: 9  ISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGG-LASTDVTP 56

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 31/168 (18%), Positives = 53/168 (31%), Gaps = 13/168 (7%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGE----QVGGSWIYTSETESDPLGVDPNRYP 60
           V VIGAG AG V    + + G  V + EK +     +G S +       D  G       
Sbjct: 8   VLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLD-AVK 66

Query: 61  VHSSLYK-SLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVD 119
                 K   +    +E+  F      +  +  +  + R        + L + A   GVD
Sbjct: 67  AQGFQQKFGAKFVRGKEIADFNFSDQFSNGWNWTWQVPR----GNFDKTLADEAARQGVD 122

Query: 120 QVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV 167
             V     V + +              +    E     ++  +G+  V
Sbjct: 123 --VEYEVGVTDIKF-FGTDSVTTIEDINGNKREIEARFIIDASGYGRV 167

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297

 Score = 48.7 bits (117), Expect = 1e-06
 Identities = 38/303 (12%), Positives = 82/303 (27%), Gaps = 69/303 (22%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS 64
           V +IG   AGL    +L R    +++ + GE+    +   S                   
Sbjct: 5   VIIIGGSYAGLSAALQLGRARKNILLVDAGER-RNRFASHSH------------------ 45

Query: 65  LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRL 124
                         G               ++       ++ RY            +  +
Sbjct: 46  -------GFL----GQDGKA--------PGEIIA-EARRQIERY----------PTIHWV 75

Query: 125 HTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQM 184
              V +A+             + D    ET   +++  G      L ++ G+    G  +
Sbjct: 76  EGRVTDAKGSFGEF-----IVEIDGGRRETAGRLILAMG--VTDELPEIAGLRERWGSAV 128

Query: 185 HS----HNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV---ADETHEK 237
                 H Y          + +I      +     L  + +     +  V   AD+    
Sbjct: 129 FHCPYCHGY----ELDQGKIGVIAASPMAIHHALMLPDWGETTFFTNGIVEPDADQHALL 184

Query: 238 QPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNR 297
                 +   + +        VV  +GR ++   +      +    ++E  G   V++  
Sbjct: 185 AARGVRVE-TTRIREIAGHADVVLADGRSIALAGLFTQPKLRITVDWIEKLGC-AVEEGP 242

Query: 298 VGP 300
           +G 
Sbjct: 243 MGS 245

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHT-VVVYEKGEQVGG 39
             +A++GAG A +     L R G++ + ++EK E VGG
Sbjct: 188 AKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGG 225

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Length = 367

 Score = 48.9 bits (116), Expect = 2e-06
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
            ++G+G  G V  +EL +    V+V EK   +GG+  YT + E    G+  ++Y  H
Sbjct: 4  YIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGN-AYTEDCE----GIQIHKYGAH 56

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Length = 591

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 41/212 (19%), Positives = 78/212 (36%), Gaps = 16/212 (7%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKG----EQVGGSWIYTSETESDPLGVDPNRYP 60
           VA+IG G AG V G  L + GH V +YE+      +VG S +  + +  + LG+      
Sbjct: 26  VAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDA 85

Query: 61  VHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGH---EEVLRYLQNFAREFG 117
            +     S      ++   +    F     + +  +  +      EE  + L + AR  G
Sbjct: 86  QNYVKKPSATFLWGQDQAPW---TFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRG 142

Query: 118 VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFS-VPRLAQVPGI 176
           +   V   T V +   +      V + ++         D V+   G    + R   V   
Sbjct: 143 IT--VHEETPVTDV-DLSDPDRVVLTVRRGGESVTVESDFVIDAGGSGGPISRKLGVRQY 199

Query: 177 DSWPGKQ-MHSHNYRIPNPFQDQVVILIGHYA 207
           D +     + S+ +++ +PF+  +        
Sbjct: 200 DEFYRNFAVWSY-FKLKDPFEGDLKGTTYSIT 230

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 Length = 401

 Score = 48.6 bits (117), Expect = 2e-06
 Identities = 35/197 (17%), Positives = 70/197 (35%), Gaps = 54/197 (27%)

Query: 1   MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLG------- 53
            +    +IGAGAAGL    +L + G +V V++ G+++ G  I  S       G       
Sbjct: 3   QYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI-GRKILMS-------GGGFCNFT 54

Query: 54  ---VDPNRYPVHSS----LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEE-- 104
              V P  Y   S     +  +L      + +               V  +    HE+  
Sbjct: 55  NLEVTPAHY--LSQNPHFVKSALARYTNWDFISL-------------VAEQGITYHEKEL 99

Query: 105 -----------VLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE 153
                      ++  L++   ++G    + L +EV     +++++      + +    + 
Sbjct: 100 GQLFCDEGAEQIVEMLKSECDKYGAK--ILLRSEVSQVERIQNDEKVRFVLQVNS--TQW 155

Query: 154 TFDAVVVCNGHFSVPRL 170
               ++V  G  S+P L
Sbjct: 156 QCKNLIVATGGLSMPGL 172

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Length = 384

 Score = 48.5 bits (115), Expect = 2e-06
 Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 4  HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETE 48
           + ++GAG +G V+G +L  +GH V + ++ + +GG+  Y +   
Sbjct: 5  KILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGN-SYDARDS 48

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397

 Score = 48.2 bits (114), Expect = 3e-06
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPL 52
            ++GAG AG V+   L   G  V++ ++   +GG+  Y    ++  L
Sbjct: 32 YLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGN-AYDCYDDAGVL 78

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} Length = 430

 Score = 48.4 bits (114), Expect = 3e-06
 Identities = 36/191 (18%), Positives = 62/191 (32%), Gaps = 37/191 (19%)

Query: 1   MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEK--GEQVGGSWIYTSETESDP-----LG 53
           M + + ++GAG AGL +G  L +    V VY     ++  G  +  +   +       + 
Sbjct: 21  MKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSGLRLLNTVAHNAVTVQREVA 80

Query: 54  VDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVAR--NYEGSVDLRRYPGHEEVLRYLQN 111
           +D N +P     Y      +     G Q   F         +VD R Y         L  
Sbjct: 81  LDVNEWPSEEFGYFGHYYYVG----GPQPMRFYGDLKAPSRAVDYRLY------QPMLMR 130

Query: 112 FAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLA 171
                G          V    L   +               E +D +VVC G +++ ++ 
Sbjct: 131 ALEARGGKFCYD---AVSAEDLEGLS---------------EQYDLLVVCTGKYALGKVF 172

Query: 172 QVPGIDSWPGK 182
           +    +S   K
Sbjct: 173 EKQSENSPFEK 183

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 16/37 (43%), Positives = 23/37 (62%)

Query: 3  RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
          R VA++GAG +GL     L + G +V V E  ++VGG
Sbjct: 6  RDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGG 42

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 Length = 447

 Score = 48.3 bits (116), Expect = 3e-06
 Identities = 34/191 (17%), Positives = 62/191 (32%), Gaps = 49/191 (25%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTS----------ETESDPLGV 54
           V VIG G +GL+       EG  V++ +KG ++ G  +  S              + +  
Sbjct: 29  VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKL-GRKLAISGGGRCNVTNRLPLDEIV-- 85

Query: 55  DPNRYPVHSS-LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEE--------- 104
                P +   LY +  +    +++ F              +       EE         
Sbjct: 86  --KHIPGNGRFLYSAFSIFNNEDIITF-------------FENLGVKLKEEDHGRMFPVS 130

Query: 105 -----VLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV 159
                V+  L    ++ GV   +R +T V            V  +  + +      + VV
Sbjct: 131 NKAQSVVDALLTRLKDLGVK--IRTNTPVETIEYENGQTKAVILQTGEVL----ETNHVV 184

Query: 160 VCNGHFSVPRL 170
           +  G  SVP+ 
Sbjct: 185 IAVGGKSVPQT 195

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Length = 431

 Score = 48.3 bits (115), Expect = 3e-06
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDP 51
            V+G G +GL    +L   G  V++ E GE++GG   Y+ E+ + P
Sbjct: 4  AIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGR-AYSRESRNVP 49

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} Length = 417

 Score = 47.9 bits (115), Expect = 4e-06
 Identities = 37/193 (19%), Positives = 66/193 (34%), Gaps = 58/193 (30%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLG----------V 54
           V +IGAGAAG++   E  + G  V+V +      G  I  S       G           
Sbjct: 30  VVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAP-GEKIRIS-------GGGRCNFTNIHA 81

Query: 55  DPNRYPVHSS----LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEE------ 104
            P  +   S        +L    P++ +               V+      HE+      
Sbjct: 82  SPRNF--LSGNPHFCKSALARYRPQDFVAL-------------VERHGIGWHEKTLGQLF 126

Query: 105 -------VLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA 157
                  ++R L    +E GV   +RL T +       ++ ++V +             +
Sbjct: 127 CDHSAKDIIRMLMAEMKEAGVQ--LRLETSIGEVE-RTASGFRVTTSA-----GTVDAAS 178

Query: 158 VVVCNGHFSVPRL 170
           +VV +G  S+P++
Sbjct: 179 LVVASGGKSIPKM 191

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Length = 425

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 15/37 (40%), Positives = 19/37 (51%)

Query: 4  HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40
             VIGAG  GL+    L + GH V V+E+    GG 
Sbjct: 2  KTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGR 38

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Length = 332

 Score = 46.8 bits (112), Expect = 6e-06
 Identities = 25/135 (18%), Positives = 51/135 (37%), Gaps = 18/135 (13%)

Query: 99  YPGHEEVLRY-----LQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE 153
             G  ++        L+    +F     + L   V +        +K+ + ++       
Sbjct: 58  VAGFPKIRAQELINNLKEQMAKFDQT--ICLEQAVESVEKQADGVFKLVTNEE-----TH 110

Query: 154 TFDAVVVCNGHFS-VPRLAQVPGIDSWPGKQMHSHNYRIPNP--FQDQVVILIGHYASGL 210
               V++  G+ +  PR  ++   + + GK +H   Y + +   F  + V ++G   S +
Sbjct: 111 YSKTVIITAGNGAFKPRKLELENAEQYEGKNLH---YFVDDLQKFAGRRVAILGGGDSAV 167

Query: 211 DIKRDLAGFAKEVHI 225
           D    L   AKEV I
Sbjct: 168 DWALMLEPIAKEVSI 182

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* Length = 379

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 3  RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG 38
          R   V G G AGL     L + G  V ++EK  ++ 
Sbjct: 12 RRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELR 47

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... Length = 394

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 31/184 (16%), Positives = 57/184 (30%), Gaps = 41/184 (22%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDP--LGVDPNRYPVH 62
           VA+IGAG +GL++G  L + G   V+ E+                      ++       
Sbjct: 5   VAIIGAGPSGLLLGQLLHKAGIDNVILERQTP--------DYVLGRIRAGVLEQG----- 51

Query: 63  SSLYKSLRV--------NLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQ---- 110
                 + +         + R+ +  +            +DL+R  G + V  Y Q    
Sbjct: 52  -----MVDLLREAGVDRRMARDGLVHEGVEIAFAGQRRRIDLKRLSGGKTVTVYGQTEVT 106

Query: 111 -----NFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHF 165
                           V    EV    L +  +  V + ++D        D +  C+G  
Sbjct: 107 RDLMEAREACGAT--TVYQAAEVRLHDL-QGERPYV-TFERDGERLRLDCDYIAGCDGFH 162

Query: 166 SVPR 169
            + R
Sbjct: 163 GISR 166

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 19/114 (16%), Positives = 42/114 (36%), Gaps = 1/114 (0%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS 64
           V ++G+G  G     EL+  G+ V +++ GE   G  I   +  +     + +++  +  
Sbjct: 49  VVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFV-NVI 107

Query: 65  LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGV 118
             + + V++P   +        +               ++ LR L   A    V
Sbjct: 108 QGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVV 161

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 4  HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDP 51
           V V+G G +G+     L   G  VVV E  ++VGG   YT   +   
Sbjct: 6  DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGR-TYTLRNQKVK 52

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Length = 398

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 3  RHVAVIGAGAAGLVVGHELLREGHTVVVYEK 33
          ++VA+IG G  GL +   L + G  V VYE+
Sbjct: 27 KNVAIIGGGPVGLTMAKLLQQNGIDVSVYER 57

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Length = 407

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 12/35 (34%), Positives = 16/35 (45%)

Query: 4  HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG 38
             VIGAG  GL     L + G    VYE  +++ 
Sbjct: 25 KAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIK 59

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* Length = 510

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 14/36 (38%), Positives = 18/36 (50%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40
          V V G G AG+    E  R G  V+V E+    GG+
Sbjct: 44 VVVAGYGIAGVAASIEAARAGADVLVLERTSGWGGA 79

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Length = 566

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTS 45
           V V+GAG+AG        + G  V++ +K    GG+ + ++
Sbjct: 124 VLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISA 164

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Length = 399

 Score = 45.1 bits (106), Expect = 2e-05
 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 5  VAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHS 63
          + V+G+G  GL +   +  +    V+V E+   +GG+  Y+        G++ ++Y  H 
Sbjct: 10 LFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGN-AYSEAEPQT--GIEVHKYGAHL 66

Query: 64 SLYKSLRV 71
              + RV
Sbjct: 67 FHTSNKRV 74

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* Length = 721

 Score = 45.6 bits (106), Expect = 3e-05
 Identities = 18/126 (14%), Positives = 36/126 (28%), Gaps = 15/126 (11%)

Query: 4   HVAVIGAGAAGLVVGHELLR--------EGHTVVVYEKGEQVGGSWIYTSETESDPLGVD 55
            +A++G GA G+   +EL R         G  V +YE             +         
Sbjct: 58  RIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSFLHDRPGIKAIKVRGLKA 117

Query: 56  PNRYPVHSSLYKSLRVNLPREL--MGFQA-----YPFVARNYEGSVDLRRYPGHEEVLRY 108
                           +   E+  M F       + + +  +  +  ++ +P   +V   
Sbjct: 118 GRVSAALVHNGDPASGDTIYEVGAMRFPEIAGLTWHYASAAFGDAAPIKVFPNPGKVPTE 177

Query: 109 LQNFAR 114
                R
Sbjct: 178 FVFGNR 183

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 22/100 (22%), Positives = 44/100 (44%), Gaps = 16/100 (16%)

Query: 135 ESNKWKVKSRKKDDVVEEETFDA--VVVC--NGHFSVPRLAQVPGIDSWPGKQMHSHNYR 190
           E + +KV + +         + A  V++    G F  PR    PG   + G+ ++   Y 
Sbjct: 94  EGDLFKVTTSQG------NAYTAKAVIIAAGVGAF-EPRRIGAPGEREFEGRGVY---YA 143

Query: 191 IPNP--FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228
           + +   FQ + V+++G   S +D   +L   A+ + +  R
Sbjct: 144 VKSKAEFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHR 183

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Length = 397

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 3  RHVAVIGAGAAGLVVGHELLREGHTVVVYEK 33
            +AV+G   +GL     L   G  V VYE+
Sbjct: 6  DRIAVVGGSISGLTAALMLRDAGVDVDVYER 36

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* Length = 363

 Score = 44.7 bits (105), Expect = 4e-05
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 3  RHVAVIGAGAAGLVVGHELLREGHTVVVYEKG 34
          + V V+G+G  GL     L R+G++V +  + 
Sbjct: 7  KRVVVLGSGVIGLSSALILARKGYSVHILARD 38

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} Length = 381

 Score = 44.4 bits (104), Expect = 4e-05
 Identities = 35/198 (17%), Positives = 56/198 (28%), Gaps = 35/198 (17%)

Query: 5   VAVIGAGAAGLVVGHEL--LREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
           + VIGAG AGLV   +L   R    + + EK +          E E    GV     P  
Sbjct: 3   ILVIGAGPAGLVFASQLKQARPLWAIDIVEKND----------EQEVLGWGVVLPGRPGQ 52

Query: 63  SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRY-----LQNFAREFG 117
                   ++ P  L       F   ++     +        V R      L++  R  G
Sbjct: 53  HPANPLSYLDAPERLNPQFLEDFKLVHHNEPSLMSTGVLLCGVERRGLVHALRDKCRSQG 112

Query: 118 VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGID 177
           +   +R  + +L                    +    +D VV+ NG            + 
Sbjct: 113 IA--IRFESPLLE----------------HGELPLADYDLVVLANGVNHKTAHFTEALVP 154

Query: 178 SWPGKQMHSHNYRIPNPF 195
                +     Y     F
Sbjct: 155 QVDYGRNKYIWYGTSQLF 172

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} Length = 369

 Score = 44.1 bits (105), Expect = 6e-05
 Identities = 15/34 (44%), Positives = 18/34 (52%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG 38
            VIGAG  GL +   L   GH V+V E  E +G
Sbjct: 7  CIVIGAGVVGLAIARALAAGGHEVLVAEAAEGIG 40

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Length = 572

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40
           V +IG+G AGL         G  V++ EK    GG+
Sbjct: 129 VVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGN 164

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Length = 571

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40
           V V+G+G AG          G  V++ EK   +GG+
Sbjct: 129 VVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGN 164

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} Length = 344

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 5   VAVIGAGAAGLVVGHEL--LREGHTVVVYEKGEQVGG-SWIY 43
           + ++GAG+ GL   + L  LR    + + E G   GG +W+ 
Sbjct: 82  IVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLG 123

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Length = 495

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 5/117 (4%)

Query: 4   HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHS 63
            V VIG G  GL    +L   G   ++ E  +++GG   ++S  +  P  +       H 
Sbjct: 41  DVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGR-SWSSNIDGYPYEMGGTWVHWHQ 99

Query: 64  SLYKSL--RVNLPRELMGFQAYPFVARNYEG--SVDLRRYPGHEEVLRYLQNFAREF 116
           S       R  +   L     +     +++   +     Y  HE     L++   +F
Sbjct: 100 SHVWREITRYKMHNALSPSFNFSRGVNHFQLRTNPTTSTYMTHEAEDELLRSALHKF 156

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Length = 342

 Score = 42.8 bits (99), Expect = 1e-04
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 1  MFRHVAVIGAGAAGLVVGHELLREGH---TVVVYEKGEQVGGSWIYTSETESDP 51
          M + V ++GAG  G +    L R+      + V++K +  GG  + T+ +  +P
Sbjct: 1  MAQ-VLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGG-RMTTACSPHNP 52

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* Length = 397

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGE---QVGGSW 41
          V V+G G  GL    ++   GH V+V E+     + GG+ 
Sbjct: 7  VVVVGGGPVGLATAWQVAERGHRVLVLERHTFFNENGGTS 46

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 Length = 284

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 5  VAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQVGG 39
          V V+GAG+AGL   +E+ +     V + E+    GG
Sbjct: 42 VVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGG 77

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Length = 472

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 39/280 (13%), Positives = 81/280 (28%), Gaps = 31/280 (11%)

Query: 4   HVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGSWIYTSETESDP--LG---VDPN 57
            V V+GAG +G+     L   G   +++ E  + +GG  ++ +        LG   V+  
Sbjct: 6   RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGR-MHKTNFAGINVELGANWVEGV 64

Query: 58  RYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG 117
                + ++  +   L                Y+    +      ++ +  L +   E G
Sbjct: 65  NGGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIE-LADSVEEMG 123

Query: 118 VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGID 177
                 LH    +   + + +   + +        +        +  F+ P         
Sbjct: 124 EKLSATLHASGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEP-------PR 176

Query: 178 SWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEK 237
               +                 V     Y +   +   LAG   +    S  + D     
Sbjct: 177 VTSLQNTVPLATFSDFGDDVYFVADQRGYEA---VVYYLAGQYLKTDDKSGKIVD----- 228

Query: 238 QPGYDNMWLHSMVERANEDG---TVVFRNGRVVSAD-VIM 273
                 + L+ +V          TV   +  V SAD V++
Sbjct: 229 ----PRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMV 264

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 29/183 (15%), Positives = 46/183 (25%), Gaps = 58/183 (31%)

Query: 3   RHVAVIGAGAAGLVVGHELLR--EGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYP 60
           +HV VIGA A G        R      V + ++           S               
Sbjct: 4   KHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQAS-------RIS--------------- 41

Query: 61  VHSS----LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF 116
            +       Y S  V+    L        V R+ E                    F    
Sbjct: 42  -YGGCGIPYYVSGEVSNIESL--QATPYNVVRDPEF-------------------FRINK 79

Query: 117 GVDQVVRLHTEVLNARLVESNKWKVKSR-KKDDVVEEETFDAVVVCNGHFSVPRLAQVPG 175
            V+    + T       ++     V+    +        +D +V+  G  S      V G
Sbjct: 80  DVE--ALVETRAHA---IDRAAHTVEIENLRTGERRTLKYDKLVLALG--SKANRPPVEG 132

Query: 176 IDS 178
           +D 
Sbjct: 133 MDL 135

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 27/173 (15%), Positives = 52/173 (30%), Gaps = 28/173 (16%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGE-------QVGGSWIYTSETESDPLGVDPN 57
           V +IG G AG    ++L R G  +++ +            G +       +         
Sbjct: 9   VLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGE 68

Query: 58  RYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVL-RYLQNFAREF 116
              + + +   +++  P              N EG   L        +  + +   A++ 
Sbjct: 69  --ELENKI-NGIKLYSPDM------QTVWTVNGEGFE-LNA-----PLYNQRVLKEAQDR 113

Query: 117 GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF--DAVVVCNGHFSV 167
           GV+  +   T  +   + E    K          EE T     VV   G+   
Sbjct: 114 GVE--IWDLTTAMKP-IFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRS 163

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
             V +IG+G +GL    +L   G  V + E  ++VGG
Sbjct: 279 GKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 315

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A* Length = 326

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 5   VAVIGAGAAGLVVGHEL--LREGHTVVVYEKGEQVGG 39
           V ++GAG++GL   + +   R    V + E     GG
Sbjct: 68  VIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGG 104

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Length = 662

 Score = 42.6 bits (99), Expect = 2e-04
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG 39
             V +IG+G +GL    +L   G  V + E  ++VGG
Sbjct: 108 GKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 144

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Length = 382

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG-SW 41
            VIG G  G  + + L +E     ++E G   G  + 
Sbjct: 20 AVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTS 57

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* Length = 389

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ--VGGSW 41
          V V+GAG+ G+  G++L ++G   ++ +  +     GS 
Sbjct: 6  VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSH 44

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 41/306 (13%), Positives = 85/306 (27%), Gaps = 78/306 (25%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS 64
            AVIGAG AGL     L R    + +++            S      +  D         
Sbjct: 9   CAVIGAGPAGLNASLVLGRARKQIALFDNNTN-RNRVTQNSH---GFITRD------GIK 58

Query: 65  LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRL 124
                    P E                        G  EV++Y                
Sbjct: 59  ---------PEEFKE--------------------IGLNEVMKY--------PSVHYYE- 80

Query: 125 HTEVLNARLVESNKWKVKSRKKDDVVEEETFDA--VVVCNGHFSVPRLAQVPGIDSWPGK 182
              V+      +  +++         +   + A  V++  G         +P +  + GK
Sbjct: 81  -KTVVMITKQSTGLFEIV------TKDHTKYLAERVLLATG--MQEEFPSIPNVREYYGK 131

Query: 183 QMHS----HNYRIPNPFQDQVVILIGHYASG-LDIKRDLAGFAKEVHIASRS--VADETH 235
            + S      +      +DQ +I+I       L + + +  ++ ++ IA+    ++    
Sbjct: 132 SLFSCPYCDGW----ELKDQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGNELSQTIM 187

Query: 236 EK--QPGYDNMWLHSMVERANEDG----TVVFRNGRVVSADVIMHCTGYKYNYPFLETNG 289
           ++        +     +     +G     V F +G  +          +     F+E  G
Sbjct: 188 DELSNKNIPVIT--ESIRTLQGEGGYLKKVEFHSGLRIERAGGFIVPTFFRPNQFIEQLG 245

Query: 290 IVTVDD 295
                +
Sbjct: 246 CELQSN 251

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Length = 516

 Score = 41.3 bits (96), Expect = 5e-04
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 3  RHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGSWIYTSETESD 50
          + V +IGAG AGL     L + G    +V E  ++VGG  + T      
Sbjct: 9  KKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGR-LQTVTGYQG 56

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* Length = 351

 Score = 40.4 bits (94), Expect = 8e-04
 Identities = 10/30 (33%), Positives = 13/30 (43%)

Query: 4  HVAVIGAGAAGLVVGHELLREGHTVVVYEK 33
           V VIGAG  GL     +    H+V+    
Sbjct: 2  RVVVIGAGVIGLSTALCIHERYHSVLQPLD 31

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	446
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	100.0
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	100.0
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	100.0
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	100.0
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	100.0
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	100.0
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	100.0
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	100.0
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	100.0
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	100.0
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	100.0
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	100.0
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	100.0
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	100.0
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	100.0
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	100.0
3r9u_A	315	Thioredoxin reductase; structural genomics, center	100.0
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	100.0
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	100.0
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	100.0
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	100.0
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	100.0
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	100.0
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	100.0
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	100.0
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	100.0
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	100.0
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	100.0
4fk1_A	304	Putative thioredoxin reductase; structural genomic	100.0
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	99.98
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	99.98
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	99.97
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	99.97
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	99.97
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	99.97
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	99.97
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	99.97
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	99.97
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	99.97
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	99.97
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	99.97
1ojt_A	482	Surface protein; redox-active center, glycolysis,	99.97
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.97
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	99.97
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	99.97
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	99.97
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	99.97
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	99.97
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	99.97
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	99.97
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	99.97
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	99.97
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	99.97
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	99.97
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.97
1fec_A	490	Trypanothione reductase; redox-active center, oxid	99.97
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	99.97
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	99.97
4dna_A	463	Probable glutathione reductase; structural genomic	99.97
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	99.97
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	99.97
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	99.97
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	99.97
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	99.97
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	99.97
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	99.97
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	99.97
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	99.97
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.97
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	99.97
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	99.97
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	99.97
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	99.97
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	99.96
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	99.96
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	99.96
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	99.96
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	99.95
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	99.95
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	99.95
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	99.94
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	99.94
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	99.94
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	99.94
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	99.94
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	99.94
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	99.94
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	99.93
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	99.92
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	99.91
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.91
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	99.9
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.88
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	99.66
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.59
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.54
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.39
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.37
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	99.36
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	99.35
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.34
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	99.32
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	99.3
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	99.3
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	99.29
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	99.28
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.28
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.28
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.27
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.24
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	99.24
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.22
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	99.22
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.21
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.2
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	99.2
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	99.2
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	99.18
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	99.17
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	99.16
3dme_A	369	Conserved exported protein; structural genomics, P	99.16
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	99.16
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.16
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	99.16
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	99.15
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.15
3atr_A	453	Conserved archaeal protein; saturating double bond	99.14
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	99.13
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	99.12
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	99.11
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	99.1
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.1
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.09
4hb9_A	412	Similarities with probable monooxygenase; flavin,	99.08
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.04
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.04
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.03
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.03
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.02
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	99.01
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	99.01
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.0
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.0
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.99
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	98.97
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	98.97
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	98.96
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.95
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.95
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	98.91
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	98.88
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.87
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	98.87
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	98.84
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.83
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.82
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.82
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.8
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.8
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.8
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.79
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.78
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.78
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	98.77
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.76
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.76
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	98.74
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.74
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.71
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	98.71
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.7
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	98.7
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.69
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.69
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.69
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.68
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.67
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.67
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.66
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.65
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.64
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.64
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.63
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	98.63
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.63
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.63
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.63
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.62
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.61
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.61
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.6
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.6
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	98.59
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.59
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.59
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.58
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.58
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.58
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.56
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.56
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.55
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.55
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.55
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.54
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.53
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.52
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.52
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.51
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	98.51
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.49
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.49
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.47
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.46
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.45
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	98.45
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.43
4dna_A	463	Probable glutathione reductase; structural genomic	98.42
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	98.42
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.4
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.4
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.4
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.38
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.38
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.37
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.37
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	98.37
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	98.36
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	98.35
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	98.34
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	98.34
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.33
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.32
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.31
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	98.31
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	98.3
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	98.29
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.28
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	98.28
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.27
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.24
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.24
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	98.23
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.22
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	98.21
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	98.21
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.2
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	98.2
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	98.19
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	98.19
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.18
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.17
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	98.16
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.16
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	98.15
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.15
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.15
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.15
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.15
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.12
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	98.11
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.11
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	98.11
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.06
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.06
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.04
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	98.03
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.01
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	97.99
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	97.98
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	97.97
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	97.97
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.95
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	97.95
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	97.95
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	97.93
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.92
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	97.89
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	97.86
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	97.86
4fk1_A	304	Putative thioredoxin reductase; structural genomic	97.83
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	97.72
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.64
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.6
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.6
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	97.58
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.58
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	97.55
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	97.52
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.49
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	97.49
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.49
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	97.48
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	97.47
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	97.46
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	97.43
4hb9_A	412	Similarities with probable monooxygenase; flavin,	97.4
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	97.38
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	97.36
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.28
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	97.28
2bry_A	497	NEDD9 interacting protein with calponin homology a	97.26
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	97.21
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	97.17
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	97.13
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	97.11
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	97.09
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.08
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	97.06
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	97.05
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	97.0
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	96.97
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	96.95
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	96.93
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	96.79
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	96.79
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	96.72
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	96.67
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	96.66
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	96.59
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	96.54
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	96.51
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.49
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	96.49
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	96.44
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.41
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.41
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	96.33
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	96.31
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	96.31
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.3
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	96.09
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	96.07
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	96.07
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	96.05
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	96.04
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	96.03
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.03
1id1_A	153	Putative potassium channel protein; RCK domain, E.	95.96
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	95.92
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	95.88
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	95.86
3atr_A	453	Conserved archaeal protein; saturating double bond	95.85
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	95.78
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	95.77
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	95.62
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	95.39
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	95.39
3c85_A	183	Putative glutathione-regulated potassium-efflux S	95.34
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	95.32
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	95.28
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	95.27
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.26
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	95.26
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	95.13
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	95.03
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	94.98
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	94.93
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	94.86
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	94.85
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	94.82
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	94.75
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	94.71
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	94.66
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	94.66
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	94.63
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	94.6
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	94.56
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	94.54
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	94.43
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	94.4
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	94.38
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	94.37
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	94.32
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	94.27
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	94.23
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	94.23
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	94.22
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	94.22
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	94.2
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	94.19
4ezb_A	317	Uncharacterized conserved protein; structural geno	94.16
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	94.14
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	94.13
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	94.12
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	94.12
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	94.11
3qha_A	296	Putative oxidoreductase; seattle structural genomi	94.1
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	94.08
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	94.04
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	94.01
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	93.99
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	93.98
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	93.9
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	93.9
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	93.82
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	93.78
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	93.77
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	93.76
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	93.74
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	93.65
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	93.63
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	93.59
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	93.55
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	93.52
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	93.52
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	93.51
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	93.51
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	93.49
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	93.42
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	93.39
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	93.35
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	93.35
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	93.33
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	93.31
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	93.31
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	93.3
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	93.26
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	93.24
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	93.22
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	93.21
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	93.13
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	93.11
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	93.06
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	93.03
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	93.02
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	93.01
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	93.01
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	93.01
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	92.99
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	92.8
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	92.78
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	92.77
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	92.72
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	92.72
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	92.7
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	92.66
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	92.66
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	92.61
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	92.59
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	92.58
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	92.56
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	92.56
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	92.55
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	92.54
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	92.54
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	92.53
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	92.48
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	92.47
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	92.46
4g65_A	461	TRK system potassium uptake protein TRKA; structur	92.41
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	92.37
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	92.37
3tl2_A	315	Malate dehydrogenase; center for structural genomi	92.36
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	92.34
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	92.34
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	92.28
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	92.27
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	92.24
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	92.22
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	92.2
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	92.2
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	92.15
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	92.15
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	92.14
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	92.06
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	92.04
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	92.02
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	91.99
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	91.99
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	91.95
3dme_A	369	Conserved exported protein; structural genomics, P	91.93
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	91.87
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	91.84
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	91.8
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	91.77
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	91.75
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	91.74
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	91.73
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	91.71
1id1_A	153	Putative potassium channel protein; RCK domain, E.	91.69
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	91.66
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	91.66
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	91.6
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	91.56
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	91.56
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	91.52
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	91.52
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	91.5
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	91.48
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	91.41
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	91.41
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	91.4
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	91.4
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	91.39
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	91.38
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	91.37
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	91.36
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	91.36
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	91.33
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	91.32

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=100.00  E-value=2e-64  Score=508.31  Aligned_cols=402  Identities=27%  Similarity=0.442  Sum_probs=342.2

Q ss_pred             CCCeEEEECcChHHHHHHHHHHH---CCCc---EEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCC
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLR---EGHT---VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLP   74 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~---~g~~---v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~   74 (446)
                      |.+||+|||||++||++|+.|++   .|++   |+|||+++.+||.|.+....+.++.|     ...++.+|+.+++|.+
T Consensus         1 M~~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g-----~~~~~~~y~~l~~~~~   75 (464)
T 2xve_A            1 MATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENG-----EPVHSSMYRYLWSNGP   75 (464)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTS-----SBCCCCCCTTCBCSSC
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccC-----CCCcCccccchhhcCC
Confidence            56899999999999999999999   9999   99999999999999987544333333     2346789999999999


Q ss_pred             CCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCC-CceEEEEEeCC-CceEE
Q 013303           75 RELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRKKD-DVVEE  152 (446)
Q Consensus        75 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~-~~~~v~~~~~~-~~~~~  152 (446)
                      +..++|++||++...   ..+.+.|+++.++.+|+.++++++++..+++++++|+.|++.++ +.|+|++.++. +...+
T Consensus        76 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~  152 (464)
T 2xve_A           76 KECLEFADYTFDEHF---GKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYS  152 (464)
T ss_dssp             GGGTCBTTBCHHHHH---SSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred             hhhcccCCCCCCccc---CCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEE
Confidence            999999999886531   12246789999999999999999999888999999999998762 37999998742 33457


Q ss_pred             EEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc
Q 013303          153 ETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD  232 (446)
Q Consensus       153 ~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~  232 (446)
                      +.||+||+|||+++.|++|.+||++.|.|.++|++.|+++..+.+|+|+|||+|.||+|+|.+|++.+++|+++.+++..
T Consensus       153 ~~~d~VVvAtG~~s~p~~p~ipG~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~  232 (464)
T 2xve_A          153 EEFDYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAP  232 (464)
T ss_dssp             EEESEEEECCCSSSSBCCCCCBTTTTCCSEEEEGGGCCCGGGGTTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCC
T ss_pred             EEcCEEEECCCCCCCCccCCCCCcccCCceEEehhhhCCHhHcCCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCC
Confidence            89999999999999999999999999999999999999988889999999999999999999999999999999987641


Q ss_pred             cccccCCCCCCeeeccceeEEccCCcEEecCCcEEeecEEEEecCccCCCCCCCCCCeeeeCCC-CcccccccccCCCCC
Q 013303          233 ETHEKQPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDN-RVGPLYKHVFPPVLA  311 (446)
Q Consensus       233 ~~~~~~~~~~~v~~~~~v~~i~~~~~v~~~dG~~~~~D~vi~atG~~~~~~~l~~~g~i~~~~~-~~~~l~~~~~~~~~~  311 (446)
                        +.. .-..++.+.+.|+++.++ .|+|+||+++++|.||+||||+|++|||++...+.++++ .+.++|+++++++ .
T Consensus       233 --~~~-~~~~~V~~~~~V~~i~~~-~V~~~dG~~i~~D~Vi~atG~~p~~~~l~~~~gl~~~~~~~v~~~~~~~~~t~-~  307 (464)
T 2xve_A          233 --MGY-KWPENWDERPNLVRVDTE-NAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNNRLWPLNLYKGVVWED-N  307 (464)
T ss_dssp             --CCC-CCCTTEEECSCEEEECSS-EEEETTSCEEECSEEEECCCBCCCCTTBCTTTCCCCCSSSCCSSEETTTEESS-S
T ss_pred             --CCC-CCCCceEEcCCeEEEeCC-EEEECCCCEEeCCEEEECCCCCCCCCCcCcccccccCCCcccccccceEecCC-C
Confidence              111 012467777899999764 599999999999999999999999999986433666666 4457999999977 9


Q ss_pred             CCeEEecCCCccCchhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHcCC--CCcceeecCCcchhHHHHHHH
Q 013303          312 PGLSFVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYSKLEASGK--PKRYTHIMDYPQLIEYTDWLA  389 (446)
Q Consensus       312 p~l~~iG~~~~~~~~~~~~~qa~~~a~~l~g~~~lp~~~~m~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~y~~~l~  389 (446)
                      |+|||+|++..+..+++++.||+|+|++|+|+..||+.++|++++.++.+.  ..+.  +.|++|.     +++|+|+|+
T Consensus       308 p~i~aiGd~~~~~~~~~a~~qa~~~a~~l~G~~~lP~~~~m~~~~~~~~~~--~~~~~~~~~~~~~-----~~~Y~~~l~  380 (464)
T 2xve_A          308 PKFFYIGMQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEMKADSMAWREK--ELTLVTAEEMYTY-----QGDYIQNLI  380 (464)
T ss_dssp             TTEEECSCSCCSSCHHHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHHHH--HHTCCSHHHHHHH-----HHHHHHHHH
T ss_pred             CCEEEEeCcccccchHHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHH--hhccCCCCCcccc-----HHHHHHHHH
Confidence            999999999888889999999999999999999999999999999887663  4443  3455553     689999999


Q ss_pred             HHCCCCCc-hHHHHHHHHHHHhhhcccCCcccCCc
Q 013303          390 AQCNCQGY-EEWRKQMAYSAFKNAFITRPGTYRDE  423 (446)
Q Consensus       390 ~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~yr~~  423 (446)
                      +++|++++ ++|++++|..+.+.+. .++++||+.
T Consensus       381 ~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~r~~  414 (464)
T 2xve_A          381 DMTDYPSFDIPATNKTFLEWKHHKK-ENIMTFRDH  414 (464)
T ss_dssp             TTSSSCCCCHHHHHHHHHHHHHHHH-HCTTTGGGC
T ss_pred             HHcCCCCCChHHHHHHHHHHHHHHH-hchhhhccc
Confidence            99999988 7889999999999988 999999976

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=100.00  E-value=2.8e-56  Score=447.90  Aligned_cols=372  Identities=31%  Similarity=0.582  Sum_probs=310.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC--cEEEEeeCCCcCceeeeCCCCCCCCCCCCCC-------C--------CCccCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGEQVGGSWIYTSETESDPLGVDPN-------R--------YPVHSS   64 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~--~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~-------~--------~~~~~~   64 (446)
                      .+||+|||||++||++|..|++.|.  +|+|||+.+.+||.|.+....... .. .|.       .        ....+.
T Consensus         6 ~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~-~~-ip~~~~~~~~~~~~~g~~~~~~~~~   83 (447)
T 2gv8_A            6 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNK-LP-VPSTNPILTTEPIVGPAALPVYPSP   83 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSC-CC-SSBCCTTCCCCCBCCSSSCCBCCCC
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcc-cc-cccccccccccccccccccCCccCc
Confidence            4799999999999999999999999  999999999999999986432100 00 110       0        111367


Q ss_pred             ccCceeecCCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEE
Q 013303           65 LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSR  144 (446)
Q Consensus        65 ~y~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~  144 (446)
                      +|+.+.+|.++..+.|+++|++..       ...|+++.++.+|+.+++++++..  ++++++|++|+..+ +.|+|++.
T Consensus        84 ~~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~l~~~~~~~~~~--i~~~t~V~~v~~~~-~~~~V~~~  153 (447)
T 2gv8_A           84 LYRDLQTNTPIELMGYCDQSFKPQ-------TLQFPHRHTIQEYQRIYAQPLLPF--IKLATDVLDIEKKD-GSWVVTYK  153 (447)
T ss_dssp             CCTTCBCSSCHHHHSCTTCCCCTT-------CCSSCBHHHHHHHHHHHHGGGGGG--EECSEEEEEEEEET-TEEEEEEE
T ss_pred             hhhhhccCCCHHHhccCCCCCCCC-------CCCCCCHHHHHHHHHHHHHHhhCe--EEeCCEEEEEEeCC-CeEEEEEe
Confidence            899999999999999999998765       578899999999999999998654  99999999998876 78999988


Q ss_pred             eC-CCc-eEEEEEcEEEEccCCCCCCccCCCCCCCCC----CccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhc
Q 013303          145 KK-DDV-VEEETFDAVVVCNGHFSVPRLAQVPGIDSW----PGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAG  218 (446)
Q Consensus       145 ~~-~~~-~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~----~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~  218 (446)
                      +. ++. ..++.||+||+|||+++.|++|.+||++.|    +|.++|++.|+++..+.+|+|+|||+|.||+|+|.+|++
T Consensus       154 ~~~~G~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~~~~~g~v~~~~~~~~~~~~~~k~VvVvG~G~sg~e~A~~l~~  233 (447)
T 2gv8_A          154 GTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTP  233 (447)
T ss_dssp             ESSTTCCEEEEEESEEEECCCSSSSBCBCCCBTHHHHHHHSTTSEEEGGGCCCGGGGTTCCEEEECSSHHHHHHHHHHTT
T ss_pred             ecCCCCeeEEEEeCEEEECCCCCCCCCCCCCCChhhhhccCCccEEEecccCChhhcCCCEEEEEccCcCHHHHHHHHHH
Confidence            73 233 347899999999999999999999998754    678999999999988999999999999999999999999


Q ss_pred             cCCE-EEEEEecCCccccccCCCCCCeeeccceeEEccC-CcEEecCCcE-EeecEEEEecCccCCCCC-----CCC-CC
Q 013303          219 FAKE-VHIASRSVADETHEKQPGYDNMWLHSMVERANED-GTVVFRNGRV-VSADVIMHCTGYKYNYPF-----LET-NG  289 (446)
Q Consensus       219 ~~~~-V~l~~r~~~~~~~~~~~~~~~v~~~~~v~~i~~~-~~v~~~dG~~-~~~D~vi~atG~~~~~~~-----l~~-~g  289 (446)
                      .+++ |+++.|++..      ....++...+.|+++..+ +.|+|+||++ +++|.||+||||+|++||     |++ .+
T Consensus       234 ~~~~~V~l~~r~~~~------l~~~~i~~~~~v~~~~~~~~~v~~~dG~~~~~~D~vi~atG~~~~~~~l~~~~l~~~~~  307 (447)
T 2gv8_A          234 VAKHPIYQSLLGGGD------IQNESLQQVPEITKFDPTTREIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLKSPET  307 (447)
T ss_dssp             TSCSSEEEECTTCCS------CBCSSEEEECCEEEEETTTTEEEETTTEEECCCSEEEECCCBCCCCCCHHHHSCCSTTT
T ss_pred             HhCCcEEEEeCCCCc------CCCCCeEEecCeEEEecCCCEEEECCCCEeccCCEEEECCCCCcCCCCCcccccccccC
Confidence            9999 9999998642      234567788999999633 4599999987 689999999999999999     875 34


Q ss_pred             eeeeCCCCcccccccccCCCCCCCeEEecCCCccCchhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHcCCC
Q 013303          290 IVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYSKLEASGKP  369 (446)
Q Consensus       290 ~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~~~~~~~~qa~~~a~~l~g~~~lp~~~~m~~~~~~~~~~~~~~~~~  369 (446)
                      .+.+|++...++|+++|++. +|+|||+|++.....+++++.||+|+|++|+|+..||+.++|++++.+..+.+  .+..
T Consensus       308 ~i~~~~~~~~~~~~~v~~~~-~p~l~~~G~~~~~~~~~~a~~qa~~~a~~~~g~~~lp~~~~m~~~~~~~~~~~--~~~~  384 (447)
T 2gv8_A          308 KLIDDGSHVHNVYQHIFYIP-DPTLAFVGLALHVVPFPTSQAQAAFLARVWSGRLKLPSKEEQLKWQDELMFSL--SGAN  384 (447)
T ss_dssp             CCCSSSSSCCSEETTTEETT-CTTEEESSCCBSSCHHHHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHHHHH--TTCG
T ss_pred             ceecCCCcccccccccccCC-CCcEEEEeccccccCchHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHHh--cCCC
Confidence            46677777778999999876 99999999988777889999999999999999999999999999888654332  3444


Q ss_pred             CcceeecCCcchhHHHHHHHHHCCCC
Q 013303          370 KRYTHIMDYPQLIEYTDWLAAQCNCQ  395 (446)
Q Consensus       370 ~~~~~~~~~~~~~~y~~~l~~~~g~~  395 (446)
                      .++ |.+..+.+++|+++|++++|..
T Consensus       385 ~~~-~~~~~~~~~~y~~~l~~~~~~~  409 (447)
T 2gv8_A          385 NMY-HSLDYPKDATYINKLHDWCKQA  409 (447)
T ss_dssp             GGT-TBCTTTHHHHHHHHHHHHHHTC
T ss_pred             cce-eecCCccHHHHHHHHHHHhCcc
Confidence            444 8776346899999999998753

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=100.00  E-value=7.3e-41  Score=325.45  Aligned_cols=302  Identities=21%  Similarity=0.326  Sum_probs=238.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      ++||+|||||++|+++|..|++.|++|+|||+.+.+||.|.+                     .|+.+..+.+...+.++
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~---------------------~~~~~~~~~~~~~~~~~   61 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQH---------------------AWHSLHLFSPAGWSSIP   61 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGG---------------------SCTTCBCSSCGGGSCCS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccC---------------------CCCCcEecCchhhhhCC
Confidence            469999999999999999999999999999999999999986                     25555666666677777


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceE-EEEEeCCCceEEEEEcEEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSRKKDDVVEEETFDAVVV  160 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~-v~~~~~~~~~~~~~~d~VVv  160 (446)
                      .++++..       ...|+++.++.+|+.++++++++.  ++++++|+++++.+ +.|. |++.++     ++.||+||+
T Consensus        62 ~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~v~~i~~~~-~~~~~v~~~~g-----~~~~d~vV~  126 (357)
T 4a9w_A           62 GWPMPAS-------QGPYPARAEVLAYLAQYEQKYALP--VLRPIRVQRVSHFG-ERLRVVARDGR-----QWLARAVIS  126 (357)
T ss_dssp             SSCCCCC-------SSSSCBHHHHHHHHHHHHHHTTCC--EECSCCEEEEEEET-TEEEEEETTSC-----EEEEEEEEE
T ss_pred             CCCCCCC-------ccCCCCHHHHHHHHHHHHHHcCCE--EEcCCEEEEEEECC-CcEEEEEeCCC-----EEEeCEEEE
Confidence            7776543       567889999999999999999998  99999999999876 7788 765442     799999999


Q ss_pred             ccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC---ccc---
Q 013303          161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA---DET---  234 (446)
Q Consensus       161 AtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~---~~~---  234 (446)
                      |||.++.|++|.+||.+.+.+..+|+..+.....+.+++|+|||+|.+|+|+|..|++.+ +|+++.++..   ...   
T Consensus       127 AtG~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~~~~  205 (357)
T 4a9w_A          127 ATGTWGEAYTPEYQGLESFAGIQLHSAHYSTPAPFAGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHEPAFLADDVDG  205 (357)
T ss_dssp             CCCSGGGBCCCCCTTGGGCCSEEEEGGGCCCSGGGTTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSCCCBCCTTCCT
T ss_pred             CCCCCCCCCCCCCCCccccCCcEEEeccCCChhhcCCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCCCeecchhhcC
Confidence            999988999999999998999999999999888889999999999999999999999998 6999998743   000   


Q ss_pred             -------cccCC----------------------------CCCCeeeccceeEEccCCcEEecCCcEEeecEEEEecCcc
Q 013303          235 -------HEKQP----------------------------GYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYK  279 (446)
Q Consensus       235 -------~~~~~----------------------------~~~~v~~~~~v~~i~~~~~v~~~dG~~~~~D~vi~atG~~  279 (446)
                             .+.+.                            +.+.+...+.+.++..++ +.+.||+++++|.||+|||++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~v~~~~~~~-v~~~~g~~i~~D~vi~a~G~~  284 (357)
T 4a9w_A          206 RVLFERATERWKAQQEGREPDLPPGGFGDIVMVPPVLDARARGVLAAVPPPARFSPTG-MQWADGTERAFDAVIWCTGFR  284 (357)
T ss_dssp             HHHHTC----------------------CBCCCHHHHHHHHTTCCCEECCCSEEETTE-EECTTSCEEECSEEEECCCBC
T ss_pred             ccHHHHHHHHHhccccccCCCcccccccCcccChhHHHHHhcCceEEecCcceEeCCe-eEECCCCEecCCEEEECCCcC
Confidence                   01111                            112344556677776544 999999999999999999999


Q ss_pred             CCCCCCCCCCeeeeCCCCccccccc-ccCCCCCCCeEEecC--CCc--cCchhHHHHHHHHHHHHHcCCC
Q 013303          280 YNYPFLETNGIVTVDDNRVGPLYKH-VFPPVLAPGLSFVGI--PQK--VIPFPFFELQSKWIASVLSGRI  344 (446)
Q Consensus       280 ~~~~~l~~~g~i~~~~~~~~~l~~~-~~~~~~~p~l~~iG~--~~~--~~~~~~~~~qa~~~a~~l~g~~  344 (446)
                      |+++++...+ +. +++.......+ .+. ++.|+||++|+  +..  ......+..||+.+|+++...+
T Consensus       285 p~~~~l~~~g-l~-~~~G~i~vd~~~l~~-t~~~~vya~Gd~d~~~~~~~~~~~A~~~g~~~a~~i~~~l  351 (357)
T 4a9w_A          285 PALSHLKGLD-LV-TPQGQVEVDGSGLRA-LAVPSVWLLGYGDWNGMASATLIGVTRYAREAVRQVTAYC  351 (357)
T ss_dssp             CCCGGGTTTT-CB-CTTSCBCBCTTSCBB-SSCTTEEECSSCGGGSTTCSSTTTHHHHHHHHHHHHHHHT
T ss_pred             CCCcccCccc-cc-CCCCCccccCCcccC-CCCCCeEEeccccccccchhhhhhhHHHHHHHHHHHHHHH
Confidence            9999986644 22 22222122222 123 45899999994  432  3445678889999988876544

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=100.00  E-value=3.2e-40  Score=336.82  Aligned_cols=309  Identities=23%  Similarity=0.353  Sum_probs=238.9

Q ss_pred             CeEEEECcChHHHHHHHHHH-HCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            3 RHVAVIGAGAAGLVVGHELL-REGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~-~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      +||+|||||++|+++|..|+ +.|++|+|||+++.+||+|...                    .|+....+.|...+.++
T Consensus         9 ~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~--------------------~ypg~~~d~~s~~~~~~   68 (540)
T 3gwf_A            9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWN--------------------RYPGALSDTESHLYRFS   68 (540)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHC--------------------CCTTCEEEEEGGGSSCC
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCccccc--------------------CCCCceecCCcceeeec
Confidence            58999999999999999999 8999999999999999999864                    24444444444444433


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCC-CceEEEEEeCCCceEEEEEcEEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRKKDDVVEEETFDAVVV  160 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~-~~~~v~~~~~~~~~~~~~~d~VVv  160 (446)
                         +.............|+++.++.+|+.++++++++...++++++|++++..++ +.|+|++.++.    ++.||+||+
T Consensus        69 ---~~~~~~~~~~~~~~~~~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~----~i~ad~lV~  141 (540)
T 3gwf_A           69 ---FDRDLLQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGE----VYRAKYVVN  141 (540)
T ss_dssp             ---SCHHHHHHCCCSBSEEEHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSC----EEEEEEEEE
T ss_pred             ---cccccccCCCCcccCCCHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCC----EEEeCEEEE
Confidence               1100000001234678899999999999999999767999999999998763 47999887654    789999999


Q ss_pred             ccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC------c--
Q 013303          161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA------D--  232 (446)
Q Consensus       161 AtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~------~--  232 (446)
                      |||.++.|+.|++||++.|.|..+|+..+.....+.+|+|+|||+|.||+|+|..|++.+++|+++.|++.      +  
T Consensus       142 AtG~~s~p~~p~ipG~~~f~g~~~~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p~~~~~  221 (540)
T 3gwf_A          142 AVGLLSAINFPNLPGLDTFEGETIHTAAWPEGKSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRP  221 (540)
T ss_dssp             CCCSCCSBCCCCCTTGGGCCSEEEEGGGCCSSCCCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEECCCCB
T ss_pred             CCcccccCCCCCCCCccccCCCEEEeecCCCccccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCccCC
Confidence            99999999999999999999999999998888788999999999999999999999999999999999875      0  


Q ss_pred             ------cccccC--------------------------------------------------------------------
Q 013303          233 ------ETHEKQ--------------------------------------------------------------------  238 (446)
Q Consensus       233 ------~~~~~~--------------------------------------------------------------------  238 (446)
                            ..+++.                                                                    
T Consensus       222 ~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  301 (540)
T 3gwf_A          222 VNPEQIAEIKADYDRIWERAKNSAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAAS  301 (540)
T ss_dssp             CCHHHHHHHHHTHHHHHHHHHTSSSCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHHHTSCSCTTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHhccHHHHHHHHhccccccccccchhhhhCCHHHHHHHHHHHHhcccchhhhhhhhhhhhcCHHHHHHHHH
Confidence                  001100                                                                    


Q ss_pred             --------------------------------------CCCCCeee----ccceeEEccCCcEEecCCcEEeecEEEEec
Q 013303          239 --------------------------------------PGYDNMWL----HSMVERANEDGTVVFRNGRVVSADVIMHCT  276 (446)
Q Consensus       239 --------------------------------------~~~~~v~~----~~~v~~i~~~~~v~~~dG~~~~~D~vi~at  276 (446)
                                                            ....++.+    ...|++|++++ |+++||+++++|+||+||
T Consensus       302 ~~~~~~~~~v~dp~~~~~l~P~~~g~kR~~~~~~y~~~l~~~nV~lv~~~~~~I~~it~~g-v~~~dG~~~~~DvIV~AT  380 (540)
T 3gwf_A          302 FIRAKVAEIIEDPETARKLMPKGLFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTAKG-VVTEDGVLHELDVLVFAT  380 (540)
T ss_dssp             HHHHHHHHHCCSHHHHHHHCCCSCCCSSCEEESSTGGGGGSTTEEEEETTTSCEEEECSSE-EEETTCCEEECSEEEECC
T ss_pred             HHHHHHHHHcCCHHHHHhCCCCCCCccccCCCccHHHHhcCCCEEEEeCCCCCccEEecCe-EEcCCCCEEECCEEEECC
Confidence                                                  00224444    36788898766 999999999999999999


Q ss_pred             CccCCCCCCC------CCCeeeeCC-CC-cccccccccCCCCCCCeEEe-cCCC-ccCchhHHHHHHHHHHHHHc
Q 013303          277 GYKYNYPFLE------TNGIVTVDD-NR-VGPLYKHVFPPVLAPGLSFV-GIPQ-KVIPFPFFELQSKWIASVLS  341 (446)
Q Consensus       277 G~~~~~~~l~------~~g~i~~~~-~~-~~~l~~~~~~~~~~p~l~~i-G~~~-~~~~~~~~~~qa~~~a~~l~  341 (446)
                      ||.++..++.      .+| +.+++ .. ....|..+..+. .||+|++ |... ......++|.|++|+++.|.
T Consensus       381 Gf~~~~~~~~~~~i~g~~G-~~l~~~w~~~~~~y~g~~v~g-fPN~f~~~Gp~~~~~s~~~~~e~q~~~i~~~i~  453 (540)
T 3gwf_A          381 GFDAVDGNYRRIEIRGRDG-LHINDHWDGQPTSYLGVSTAN-FPNWFMVLGPNGPFTNLPPSIETQVEWISDTIG  453 (540)
T ss_dssp             CBSCSSHHHHTSEEECGGG-CBHHHHTSSSCCCBTTTBCTT-CTTEEESSCSSCBCSCHHHHHHHHHHHHHHHHH
T ss_pred             ccCccccCcCcceEECCCC-cCHHHhhccChhhccccccCC-CCceEEEecCCCCCccHHHHHHHHHHHHHHHHH
Confidence            9999874442      223 33332 11 123788888877 9999999 5432 33445788999999999886

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=100.00  E-value=1.2e-38  Score=325.71  Aligned_cols=309  Identities=25%  Similarity=0.351  Sum_probs=236.0

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d   82 (446)
                      +||+|||||++|+++|..|++.|++|+|||+++.+||+|...                    .|+....+.|...+.++ 
T Consensus        22 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~--------------------~ypg~~~dv~s~~y~~~-   80 (549)
T 4ap3_A           22 YDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWN--------------------RYPGARCDVESIDYSYS-   80 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHC--------------------CCTTCBCSSCTTTSSCC-
T ss_pred             CCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccC--------------------CCCCceeCCCchhcccc-
Confidence            589999999999999999999999999999999999999864                    23333333444433332 


Q ss_pred             CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCC-CceEEEEEeCCCceEEEEEcEEEEc
Q 013303           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~-~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                        +.............|+++.++.+|+.+.++++++...++++++|++++..++ +.|+|++.++.    ++.||+||+|
T Consensus        81 --f~~~~~~~~~~~~~~~~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~----~i~ad~lV~A  154 (549)
T 4ap3_A           81 --FSPELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGD----EVSARFLVVA  154 (549)
T ss_dssp             --SCHHHHHHCCCSSSSCBHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCC----EEEEEEEEEC
T ss_pred             --cccccccCCCCccCCCCHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCC----EEEeCEEEEC
Confidence              1100000001245688999999999999999999777999999999998763 47999886654    6899999999


Q ss_pred             cCCCCCCccCCCCCCCCCCccEEEeeecC-CCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc--------
Q 013303          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYR-IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD--------  232 (446)
Q Consensus       162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~-~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~--------  232 (446)
                      ||.++.|+.|++||++.|.|..+|+..+. +..++.+|+|+|||+|.+|+|+|..|++.+++|+++.|++.-        
T Consensus       155 tG~~s~p~~p~ipG~~~f~g~~~~~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~ilp~~~~~  234 (549)
T 4ap3_A          155 AGPLSNANTPAFDGLDRFTGDIVHTARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANYSIPAGNVP  234 (549)
T ss_dssp             CCSEEECCCCCCTTGGGCCSEEEEGGGCCTTCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECC---
T ss_pred             cCCCCCCCCCCCCCcccCCCceEEeccccccccccCCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCcCCC
Confidence            99999999999999999999999999888 577789999999999999999999999999999999998740        


Q ss_pred             ------cccc----------------------------------------------------------------------
Q 013303          233 ------ETHE----------------------------------------------------------------------  236 (446)
Q Consensus       233 ------~~~~----------------------------------------------------------------------  236 (446)
                            ..++                                                                      
T Consensus       235 ~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (549)
T 4ap3_A          235 LDDATRAEQKANYAERRRLSRESGGGSPHRPHPKSALEVSEEERRAVYEERWKLGGVLFSKAFPDQLTDPAANDTARAFW  314 (549)
T ss_dssp             -CHHHHHHHHHTHHHHHHHHHHSSSSSSCCCCSSCTTSSCHHHHHHHHHHHHHHCHHHHTTSSTTTTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhccHHHHHHHHhhccccccccCccchhcCCHHHHHHHHHHHHhhcchHHHhhhhhhhcCHHHHHHHHHHH
Confidence                  0000                                                                      


Q ss_pred             ---------------cC-C--------------------CCCCeee----ccceeEEccCCcEEecCCcEEeecEEEEec
Q 013303          237 ---------------KQ-P--------------------GYDNMWL----HSMVERANEDGTVVFRNGRVVSADVIMHCT  276 (446)
Q Consensus       237 ---------------~~-~--------------------~~~~v~~----~~~v~~i~~~~~v~~~dG~~~~~D~vi~at  276 (446)
                                     .+ +                    ...++.+    ...|++|++++ |++.|| ++++|+||+||
T Consensus       315 ~~~~~~~v~d~~~~~~l~P~~~~~~~kR~~~~~~y~~al~~~~V~lvd~~~~~I~~it~~g-v~~~dG-~~~~D~iI~AT  392 (549)
T 4ap3_A          315 EEKIRAVVDDPAVAELLTPKDHAIGAKRIVLDSGYYETYNRDNVELVDLRSTPIVGMDETG-IVTTGA-HYDLDMIVLAT  392 (549)
T ss_dssp             HHHHHHHCSCHHHHHHHSCSSCCBTTBCCEEESSTGGGGGSTTEEEEETTTSCEEEEETTE-EEESSC-EEECSEEEECC
T ss_pred             HHHHHHHcCCHHHHHhCCCCCCCCCccccCCCccHHHHhcCCCEEEEeCCCCCceEEeCCc-EEeCCC-ceecCEEEECC
Confidence                           00 0                    0113333    35688887765 999999 99999999999


Q ss_pred             CccCCCCCCCCCC-----eeeeCCC-Ccc-cccccccCCCCCCCeEEecCCC----ccCchhHHHHHHHHHHHHHc
Q 013303          277 GYKYNYPFLETNG-----IVTVDDN-RVG-PLYKHVFPPVLAPGLSFVGIPQ----KVIPFPFFELQSKWIASVLS  341 (446)
Q Consensus       277 G~~~~~~~l~~~g-----~i~~~~~-~~~-~l~~~~~~~~~~p~l~~iG~~~----~~~~~~~~~~qa~~~a~~l~  341 (446)
                      ||.++..++..-.     .+.+++. ... ..|..+..+. .||+|++.-+.    ......+.|.|++|+++.|.
T Consensus       393 Gf~~~~~~~~~~~i~g~~G~~l~~~w~~~~~~y~g~~~~g-fPN~f~~~Gp~~~~~~~s~~~~~e~~~~~i~~~i~  467 (549)
T 4ap3_A          393 GFDAMTGSLDKLEIVGRGGRTLKETWAAGPRTYLGLGIDG-FPNFFNLTGPGSPSVLANMVLHSELHVDWVADAIA  467 (549)
T ss_dssp             CEEESSTTGGGSEEECGGGCBHHHHTTTSCCCBTTTBCTT-CTTEEETTCTTSCGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccCceeEECCCCcCHHHhhccchhhccccccCC-CCcEEEEeCCCCCCcCccHHHHHHHHHHHHHHHHH
Confidence            9999875553211     1333321 112 3788888877 99999986444    23445778999999999886

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=100.00  E-value=2e-38  Score=323.93  Aligned_cols=308  Identities=26%  Similarity=0.382  Sum_probs=231.5

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d   82 (446)
                      +||+|||||++|+++|..|++.|++|+|||+++.+||+|...                    .|+......+...+.++-
T Consensus        10 ~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~--------------------~yPg~~~d~~~~~y~~~f   69 (545)
T 3uox_A           10 LDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWN--------------------RYPGCRLDTESYAYGYFA   69 (545)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHC--------------------CCTTCBCSSCHHHHCHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccC--------------------CCCceeecCchhhccccc
Confidence            589999999999999999999999999999999999999764                    233333333333333221


Q ss_pred             CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCC-CceEEEEEeCCCceEEEEEcEEEEc
Q 013303           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~-~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                      .|-..   ........|++..++.+|+.+.++++++...++++++|++++..++ +.|+|++.++.    ++.||+||+|
T Consensus        70 ~~~~~---~~~~~~~~~~~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~----~~~ad~lV~A  142 (545)
T 3uox_A           70 LKGII---PEWEWSENFASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEE----VVTCRFLISA  142 (545)
T ss_dssp             HTTSS---TTCCCSBSSCBHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTE----EEEEEEEEEC
T ss_pred             Ccccc---cCCCccccCCCHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCC----EEEeCEEEEC
Confidence            11000   0011245688999999999999999999777999999999987653 57999886553    7899999999


Q ss_pred             cCCCCCCccCCCCCCCCCCccEEEeeecCCC-------CCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC---
Q 013303          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP-------NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA---  231 (446)
Q Consensus       162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~-------~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~---  231 (446)
                      ||.++.|+.|++||++.|.|..+|+..+...       .++.+|+|+|||+|.+|+|+|..|++.+++|+++.|++.   
T Consensus       143 tG~~s~p~~p~ipG~~~f~g~~~h~~~~~~~~~~~~~~~~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~i~  222 (545)
T 3uox_A          143 TGPLSASRMPDIKGIDSFKGESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNWCT  222 (545)
T ss_dssp             CCSCBC---CCCTTGGGCCSEEEEGGGCCBCTTSCBSCCCCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCCCE
T ss_pred             cCCCCCCcCCCCCCccccCCCeEEcccccccccccccccccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCccc
Confidence            9999999999999999999999999887765       677899999999999999999999999999999999874   


Q ss_pred             ---c--------cccc----------------------------------------------------------------
Q 013303          232 ---D--------ETHE----------------------------------------------------------------  236 (446)
Q Consensus       232 ---~--------~~~~----------------------------------------------------------------  236 (446)
                         +        ..++                                                                
T Consensus       223 p~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  302 (545)
T 3uox_A          223 PLGNSPMSKEKMDSLRNRYPTILEYVKSTDTAFPYHRDPRKGTDVSESERDAFFEELYRQPGYGIWLSGFRDLLLNKESN  302 (545)
T ss_dssp             ECCCCBCCHHHHHHHHHTHHHHHHHHTTSSSSSSCCCBSSCGGGSCHHHHHHHHHHHHHSSSTHHHHTSBTTTTTCHHHH
T ss_pred             cCCcCCCCHHHHHHHHhhhHHHHHHHhhcccccccccccchhhhCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhcCHHHH
Confidence               0        0000                                                                


Q ss_pred             ----------------------cC-C--------------------CCCCeee----ccceeEEccCCcEEecCCcEEee
Q 013303          237 ----------------------KQ-P--------------------GYDNMWL----HSMVERANEDGTVVFRNGRVVSA  269 (446)
Q Consensus       237 ----------------------~~-~--------------------~~~~v~~----~~~v~~i~~~~~v~~~dG~~~~~  269 (446)
                                            ++ +                    ...++.+    ...|++|++++ |++.|| ++++
T Consensus       303 ~~~~~~~~~~~~~~v~d~~~~~~l~P~~~~~g~kR~~~~~~y~~al~~~nV~lv~~~~~~I~~it~~g-v~~~dG-~~~~  380 (545)
T 3uox_A          303 KFLADFVAKKIRQRVKDPVVAEKLIPKDHPFGAKRVPMETNYYETYNRDNVHLVDIREAPIQEVTPEG-IKTADA-AYDL  380 (545)
T ss_dssp             HHHHHHHHHHHHHHCSCHHHHHHTSCSSSCTTSSCCCEESSHHHHTTSTTEEEEETTTSCEEEEETTE-EEESSC-EEEC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHhCCCCCCCCCCCccCCCccHHHHhcCCCEEEEecCCCCceEEccCe-EEeCCC-eeec
Confidence                                  00 0                    0113433    36788887765 999999 9999


Q ss_pred             cEEEEecCccCCCCCCCC------CCeeeeCC-CCcc-cccccccCCCCCCCeEEecCCCc----cCchhHHHHHHHHHH
Q 013303          270 DVIMHCTGYKYNYPFLET------NGIVTVDD-NRVG-PLYKHVFPPVLAPGLSFVGIPQK----VIPFPFFELQSKWIA  337 (446)
Q Consensus       270 D~vi~atG~~~~~~~l~~------~g~i~~~~-~~~~-~l~~~~~~~~~~p~l~~iG~~~~----~~~~~~~~~qa~~~a  337 (446)
                      |+||+||||.++..++..      +| +.+++ .... ..|..+..+. .||+|++.-+..    .....++|.|+++++
T Consensus       381 D~IV~ATGf~~~~~~~~~~~i~g~~G-~~l~~~w~~~~~~y~g~~~~g-fPN~f~~~gp~~~~~~~s~~~~~e~~~~~i~  458 (545)
T 3uox_A          381 DVIIYATGFDAVTGSLDRIDIRGKDN-VRLIDAWAEGPSTYLGLQARG-FPNFFTLVGPHNGSTFCNVGVCGGLQAEWVL  458 (545)
T ss_dssp             SEEEECCCCBSSSCSCTTSEEECGGG-CBHHHHTTTSCCCBTTTBCTT-CTTEEECSSGGGTGGGSCHHHHHHHHHHHHH
T ss_pred             CEEEECCccccccccCCCceEECCCC-ccHHHhhccccceeeccccCC-CCcEEEEeCCCCCCccccHHHHHHHHHHHHH
Confidence            999999999987655532      22 22221 1122 3788888877 999999875542    234567899999999


Q ss_pred             HHHc
Q 013303          338 SVLS  341 (446)
Q Consensus       338 ~~l~  341 (446)
                      ++|.
T Consensus       459 ~~i~  462 (545)
T 3uox_A          459 RMIS  462 (545)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9886

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=100.00  E-value=3e-37  Score=316.45  Aligned_cols=310  Identities=25%  Similarity=0.396  Sum_probs=229.2

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d   82 (446)
                      +||+|||||++|+++|..|++.|++|+|||+++.+||+|....                    |+++..+.+...+.++ 
T Consensus        17 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~--------------------~pg~~~d~~~~~~~~~-   75 (542)
T 1w4x_A           17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNR--------------------YPGARCDIESIEYCYS-   75 (542)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCC--------------------CTTCBCSSCTTTSSCC-
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccC--------------------CCceeecccccccccc-
Confidence            5899999999999999999999999999999999999997531                    2222222222222222 


Q ss_pred             CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCC-CceEEEEEeCCCceEEEEEcEEEEc
Q 013303           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~-~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                        |.+...........|+++.++.+|+..+++++++...++++++|++++..++ +.|+|++.++.    ++.||+||+|
T Consensus        76 --f~~~~~~~~~~~~~~~~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~----~~~ad~vV~A  149 (542)
T 1w4x_A           76 --FSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGD----RIRARYLIMA  149 (542)
T ss_dssp             --SCHHHHHHCCCCBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCC----EEEEEEEEEC
T ss_pred             --cChhhhhccCcccccCCHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCC----EEEeCEEEEC
Confidence              1000000001134678899999999999999998777999999999998653 57999876543    6899999999


Q ss_pred             cCCCCCCccCCCCCCCCCCccEEEeeecC-CCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc-------c
Q 013303          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYR-IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD-------E  233 (446)
Q Consensus       162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~-~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~-------~  233 (446)
                      ||.++.|++|++||++.|.|.++|+..+. +..++.+|+|+|||+|.||+|+|..|++.+.+|+++.|++.-       .
T Consensus       150 tG~~s~p~~p~i~G~~~f~G~~~hs~~~~~~~~~~~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~~~p~~~~~  229 (542)
T 1w4x_A          150 SGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPARNAP  229 (542)
T ss_dssp             CCSCCCCCCCCCTTGGGCCSEEEEGGGCCSSCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECCCCB
T ss_pred             cCCCCCCCCCCCCCcccCCCceEECCCCCCchhccCCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcccccCCCCC
Confidence            99999999999999999999999999887 556788999999999999999999999999999999987630       0


Q ss_pred             -------cccc---------------------------------------------------------------------
Q 013303          234 -------THEK---------------------------------------------------------------------  237 (446)
Q Consensus       234 -------~~~~---------------------------------------------------------------------  237 (446)
                             .+.+                                                                     
T Consensus       230 ~~~~~~~~~~~~~p~l~~~~~~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~  309 (542)
T 1w4x_A          230 LDPEFLADLKKRYAEFREESRNTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEFI  309 (542)
T ss_dssp             CCHHHHHHHHTTHHHHHHHHHTSSSSSCCCCCCSCTTTSCHHHHHHHHHHHHHHCSGGGGGSSTTTTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhhCHHHHHHHHhhccccccCccccchhcCCHHHHHHHHHHHHhhcchHHHHHHHHHhcChHHHHHHHHHH
Confidence                   0000                                                                     


Q ss_pred             ----------------C-C--------------------CCCCeee----ccceeEEccCCcEEecCCcEEeecEEEEec
Q 013303          238 ----------------Q-P--------------------GYDNMWL----HSMVERANEDGTVVFRNGRVVSADVIMHCT  276 (446)
Q Consensus       238 ----------------~-~--------------------~~~~v~~----~~~v~~i~~~~~v~~~dG~~~~~D~vi~at  276 (446)
                                      + +                    ..+++.+    ...|+++++++ |+++| +++++|+||+||
T Consensus       310 ~~~~~~~~~~~~~~~~l~P~~~~~~~kr~~~~~~y~~~~~~~~v~lv~~~~~~i~~i~~~g-v~~~d-~~~~~D~ii~at  387 (542)
T 1w4x_A          310 RNKIRNTVRDPEVAERLVPKGYPFGTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITPRG-VRTSE-REYELDSLVLAT  387 (542)
T ss_dssp             HHHHHHHCSSHHHHHHHSCCSSCSSSSCCEEESSHHHHTTSTTEEEEETTTSCEEEECSSE-EEESS-CEEECSEEEECC
T ss_pred             HHHHHHHcCCHHHHHhcCCCCCCccccCCCCCccHHHHhCCCCEEEEecCCCCceEEcCCe-EEeCC-eEEecCEEEEcC
Confidence                            0 0                    0022333    35688887655 99999 899999999999


Q ss_pred             CccCCCCCCC------CCCeeeeCCCCcc-cccccccCCCCCCCeEEe-cCCCc---cCchhHHHHHHHHHHHHHcC
Q 013303          277 GYKYNYPFLE------TNGIVTVDDNRVG-PLYKHVFPPVLAPGLSFV-GIPQK---VIPFPFFELQSKWIASVLSG  342 (446)
Q Consensus       277 G~~~~~~~l~------~~g~i~~~~~~~~-~l~~~~~~~~~~p~l~~i-G~~~~---~~~~~~~~~qa~~~a~~l~g  342 (446)
                      |+.++.+++.      .+|....+..... ..|..+..+. .||+|++ |....   ......+|.|+++++++|..
T Consensus       388 G~~~~~~~~~~~~i~g~~G~~l~~~w~~~~~~y~~~~v~~-~Pn~f~~~G~~~~~~~~~~~~~~e~q~~~ia~~i~~  463 (542)
T 1w4x_A          388 GFDALTGALFKIDIRGVGNVALKEKWAAGPRTYLGLSTAG-FPNLFFIAGPGSPSALSNMLVSIEQHVEWVTDHIAY  463 (542)
T ss_dssp             CCCCTTHHHHTSEEECGGGCBHHHHTTTSCCCBTTTBCTT-STTEEESSCTTSSGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred             CccccccCcCceeeECCCCCCHHHhhcCchheecccccCC-CCceEEEcCCCCCcccccHHHHHHHHHHHHHHHHHH
Confidence            9999765543      2232222222222 2677777766 8999998 86532   22347889999999999863

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=100.00  E-value=6.6e-37  Score=299.41  Aligned_cols=311  Identities=20%  Similarity=0.257  Sum_probs=218.0

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      +||+|||||++|+++|..|++.|+ +|+|||+++ +||.|.+.+...           ....+.+       ....+++.
T Consensus         5 ~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~~~~~~~-----------~~~~~~~-------~~~~~g~~   65 (369)
T 3d1c_A            5 HKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFKHWPKST-----------RTITPSF-------TSNGFGMP   65 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHHTSCTTC-----------BCSSCCC-------CCGGGTCC
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCccccCcccc-----------cccCcch-------hcccCCch
Confidence            689999999999999999999999 999999988 999997642110           0000000       01111221


Q ss_pred             CCCCCcCC-CCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEE
Q 013303           82 AYPFVARN-YEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV  160 (446)
Q Consensus        82 d~~~~~~~-~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVv  160 (446)
                      ++...... .+.......++++.++.+|+.++++++++.  ++++++|+++++.+ +.|+|.+.++     ++.||+||+
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~--i~~~~~v~~i~~~~-~~~~v~~~~g-----~~~~d~vVl  137 (369)
T 3d1c_A           66 DMNAISMDTSPAFTFNEEHISGETYAEYLQVVANHYELN--IFENTVVTNISADD-AYYTIATTTE-----TYHADYIFV  137 (369)
T ss_dssp             CTTCSSTTCCHHHHHCCSSCBHHHHHHHHHHHHHHTTCE--EECSCCEEEEEECS-SSEEEEESSC-----CEEEEEEEE
T ss_pred             hhhhccccccccccccccCCCHHHHHHHHHHHHHHcCCe--EEeCCEEEEEEECC-CeEEEEeCCC-----EEEeCEEEE
Confidence            11111000 000000234678899999999999999987  89999999999875 6798876543     488999999


Q ss_pred             ccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc--------
Q 013303          161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD--------  232 (446)
Q Consensus       161 AtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~--------  232 (446)
                      |||+++.|   .+|+     +..+|+..+.....+++++|+|||+|.+|+|+|..|++.+.+|+++.+++..        
T Consensus       138 AtG~~~~p---~ip~-----~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~d~~  209 (369)
T 3d1c_A          138 ATGDYNFP---KKPF-----KYGIHYSEIEDFDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPS  209 (369)
T ss_dssp             CCCSTTSB---CCCS-----SSCEEGGGCSCGGGSCSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC----------CT
T ss_pred             CCCCCCcc---CCCC-----CceechhhcCChhhcCCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCC
Confidence            99965554   4555     3568888888777788999999999999999999999999999999987641        


Q ss_pred             --------cccccC-CCC--CCeeeccceeEEccC-C--cEEecCCcEEe-ecEEEEecCccCCCCCCC------CCCee
Q 013303          233 --------ETHEKQ-PGY--DNMWLHSMVERANED-G--TVVFRNGRVVS-ADVIMHCTGYKYNYPFLE------TNGIV  291 (446)
Q Consensus       233 --------~~~~~~-~~~--~~v~~~~~v~~i~~~-~--~v~~~dG~~~~-~D~vi~atG~~~~~~~l~------~~g~i  291 (446)
                              +.+.+. .+.  -.+.....|.++..+ +  .|.+.||+++. +|.||+|||++|+++++.      +.|.+
T Consensus       210 ~~~~~~~~~~l~~~l~~~g~v~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~d~vi~a~G~~~~~~~~~~~~~~~~~g~i  289 (369)
T 3d1c_A          210 VRLSPYTRQRLGNVIKQGARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDATKNPIVQQLFVTTNQDI  289 (369)
T ss_dssp             TSCCHHHHHHHHHHHHTTCCEEEECSCCEEEEEEETTEEEEEESSSCCEEESSCCEECCCBCGGGSHHHHHHSCCTTSCC
T ss_pred             ccCCHHHHHHHHHHHhhCCcEEEecCcEEEEEEecCCceEEEecCCeEeccCCceEEeeccCCccchhhhhhccCCCCCE
Confidence                    011111 111  234445678888432 2  27789998876 699999999999985543      33444


Q ss_pred             eeCCCCcccccccccCCCCCCCeEEecCCCccC-----chhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 013303          292 TVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI-----PFPFFELQSKWIASVLSGRIVLPSQDEMMEDVK  357 (446)
Q Consensus       292 ~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~-----~~~~~~~qa~~~a~~l~g~~~lp~~~~m~~~~~  357 (446)
                      .+|+..        +. ++.|+||++|++....     ....++.||+++|++|.|+..+|+.++|.+++.
T Consensus       290 ~v~~~~--------~~-t~~~~v~a~GD~~~~~~~~~~~~~~~~~~a~~~a~~l~~~~~~p~~~~~~~~~~  351 (369)
T 3d1c_A          290 KLTTHD--------ES-TRYPNIFMIGATVENDNAKLCYIYKFRARFAVLAHLLTQREGLPAKQEVIENYQ  351 (369)
T ss_dssp             CBCTTS--------BB-SSSTTEEECSTTCCCSSCCCCSHHHHGGGHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             Eechhh--------cc-cCCCCeEEeccccccCCeeEEEEehhhHHHHHHHHHHhcccCCCCcchHHHHHH
Confidence            444432        22 4489999999875321     123567899999999999999999887766544

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=100.00  E-value=2.6e-36  Score=290.58  Aligned_cols=280  Identities=16%  Similarity=0.185  Sum_probs=217.2

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d   82 (446)
                      +||+|||||+|||++|..|++.|++|+|||+++.+||.|.+.                     |+...      ...++.
T Consensus         8 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~---------------------~~~~~------~~~~~~   60 (332)
T 3lzw_A            8 YDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSAL---------------------YPEKY------IYDVAG   60 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHH---------------------CTTSE------ECCSTT
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhc---------------------CCCce------EeccCC
Confidence            699999999999999999999999999999999999999642                     11000      011111


Q ss_pred             CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEcc
Q 013303           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN  162 (446)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAt  162 (446)
                      ++              ..+..++..|+.++++++++.  ++++++|+++++..++.|.|++.++     ++.||+||+||
T Consensus        61 ~~--------------~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~v~~~~g-----~~~~d~vVlAt  119 (332)
T 3lzw_A           61 FP--------------KIRAQELINNLKEQMAKFDQT--ICLEQAVESVEKQADGVFKLVTNEE-----THYSKTVIITA  119 (332)
T ss_dssp             CS--------------SEEHHHHHHHHHHHHTTSCCE--EECSCCEEEEEECTTSCEEEEESSE-----EEEEEEEEECC
T ss_pred             CC--------------CCCHHHHHHHHHHHHHHhCCc--EEccCEEEEEEECCCCcEEEEECCC-----EEEeCEEEECC
Confidence            11              124689999999999999877  8999999999987644799887654     48999999999


Q ss_pred             CCCC-CCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC----cccccc
Q 013303          163 GHFS-VPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETHEK  237 (446)
Q Consensus       163 G~~s-~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~----~~~~~~  237 (446)
                      |..+ .|+.|.+||.+.|.+..+|+ .+.+...+++++|+|||+|.+|+|+|..|++.+.+|+++.+.+.    ...+.+
T Consensus       120 G~~~~~p~~~~~~g~~~~~g~~~~~-~~~~~~~~~~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~  198 (332)
T 3lzw_A          120 GNGAFKPRKLELENAEQYEGKNLHY-FVDDLQKFAGRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRAHEHSVEN  198 (332)
T ss_dssp             TTSCCEECCCCCTTGGGGBTTTEES-SCSCGGGGBTCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSSCHHHHHH
T ss_pred             CCCcCCCCCCCCCChhhccCceEEE-ecCCHHHcCCCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCccHHHHHH
Confidence            9533 89999999998888778887 67777777899999999999999999999999999999998875    111222


Q ss_pred             CCCCC-CeeeccceeEEccCCc---EEecC-----CcEEeecEEEEecCccCCCCCCCC------CCeeeeCCCCccccc
Q 013303          238 QPGYD-NMWLHSMVERANEDGT---VVFRN-----GRVVSADVIMHCTGYKYNYPFLET------NGIVTVDDNRVGPLY  302 (446)
Q Consensus       238 ~~~~~-~v~~~~~v~~i~~~~~---v~~~d-----G~~~~~D~vi~atG~~~~~~~l~~------~g~i~~~~~~~~~l~  302 (446)
                      +.+.+ ++.....|.++..++.   |.+.+     ++++++|.||+|+|+.|+.+++..      .|.+.+|++.+    
T Consensus       199 l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~----  274 (332)
T 3lzw_A          199 LHASKVNVLTPFVPAELIGEDKIEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLGPIKNWGLDIEKNSIVVKSTME----  274 (332)
T ss_dssp             HHHSSCEEETTEEEEEEECSSSCCEEEEEETTSCCEEEEECSEEEECCCEECCCGGGGGSSCCEETTEEECCTTSB----
T ss_pred             HhcCCeEEEeCceeeEEecCCceEEEEEEecCCCceEEEECCEEEEeeccCCCchHHhhcCccccCCeEEeCCCCc----
Confidence            22222 4555678888876543   77776     456889999999999999888754      35566666554    


Q ss_pred             ccccCCCCCCCeEEecCCCc----cCchhHHHHHHHHHHHHHc
Q 013303          303 KHVFPPVLAPGLSFVGIPQK----VIPFPFFELQSKWIASVLS  341 (446)
Q Consensus       303 ~~~~~~~~~p~l~~iG~~~~----~~~~~~~~~qa~~~a~~l~  341 (446)
                            ++.|+||++|++..    ......+..||+.+|.++.
T Consensus       275 ------t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~  311 (332)
T 3lzw_A          275 ------TNIEGFFAAGDICTYEGKVNLIASGFGEAPTAVNNAK  311 (332)
T ss_dssp             ------CSSTTEEECGGGEECTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             ------eecCCEEEccceecCCCCcceEeeehhhHHHHHHHHH
Confidence                  45899999998852    3345677889998888775

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=100.00  E-value=7.6e-36  Score=286.07  Aligned_cols=274  Identities=20%  Similarity=0.211  Sum_probs=214.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      ++||+|||||++|+++|..|++.|++|+|||++  +||.|.+....                              ..++
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~gg~~~~~~~~------------------------------~~~~   62 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQLTEAGIV------------------------------DDYL   62 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGGGGGCCEE------------------------------CCST
T ss_pred             ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CCCeecccccc------------------------------cccC
Confidence            469999999999999999999999999999997  99999863100                              0011


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                      .+              ...+..++.+++.+++++++++  +++ ++|.+++... +.|.|.+.++.    ++.||+||+|
T Consensus        63 ~~--------------~~~~~~~~~~~~~~~~~~~~v~--~~~-~~v~~i~~~~-~~~~v~~~~g~----~~~~d~lvlA  120 (323)
T 3f8d_A           63 GL--------------IEIQASDMIKVFNKHIEKYEVP--VLL-DIVEKIENRG-DEFVVKTKRKG----EFKADSVILG  120 (323)
T ss_dssp             TS--------------TTEEHHHHHHHHHHHHHTTTCC--EEE-SCEEEEEEC---CEEEEESSSC----EEEEEEEEEC
T ss_pred             CC--------------CCCCHHHHHHHHHHHHHHcCCE--EEE-EEEEEEEecC-CEEEEEECCCC----EEEcCEEEEC
Confidence            11              1134689999999999999998  777 8999998876 67888876643    7899999999


Q ss_pred             cCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC----cccccc
Q 013303          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETHEK  237 (446)
Q Consensus       162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~----~~~~~~  237 (446)
                      ||  +.|+.|.+||.+.|.+..+|...+.+...+.+++|+|||+|.+|+|+|..|++.+.+|+++.+.+.    ...+.+
T Consensus       121 tG--~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~  198 (323)
T 3f8d_A          121 IG--VKRRKLGVPGEQEFAGRGISYCSVADAPLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKAQPIYVET  198 (323)
T ss_dssp             CC--CEECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCSCHHHHHH
T ss_pred             cC--CCCccCCCCchhhhcCCceEEeccCCHhHcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCcCHHHHHH
Confidence            99  679999999998887777777666666667889999999999999999999999999999999875    122233


Q ss_pred             CCCCC--CeeeccceeEEccCCc---EEecC---Cc--EEeecEEEEecCccCCCCCC-------CCCCeeeeCCCCccc
Q 013303          238 QPGYD--NMWLHSMVERANEDGT---VVFRN---GR--VVSADVIMHCTGYKYNYPFL-------ETNGIVTVDDNRVGP  300 (446)
Q Consensus       238 ~~~~~--~v~~~~~v~~i~~~~~---v~~~d---G~--~~~~D~vi~atG~~~~~~~l-------~~~g~i~~~~~~~~~  300 (446)
                      +.+..  ++.....|.++..++.   |.+.|   |+  ++++|.||+|+|+.|+.+++       ++.|.+.+|++..  
T Consensus       199 ~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~g~~~~~~g~i~vd~~~~--  276 (323)
T 3f8d_A          199 VKKKPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMR--  276 (323)
T ss_dssp             HHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEECCHHHHHHTTCCBCTTSSBCCCTTCB--
T ss_pred             HHhCCCcEEEeCCEEEEEeccCceeEEEEEECCCCceEEEEcCEEEEEECCCCChhHHhhcCeeecCCCcEecCCCce--
Confidence            33332  4555667888876653   77776   87  68899999999999997765       3445666666544  


Q ss_pred             ccccccCCCCCCCeEEecCCCc----cCchhHHHHHHHHHHHHHc
Q 013303          301 LYKHVFPPVLAPGLSFVGIPQK----VIPFPFFELQSKWIASVLS  341 (446)
Q Consensus       301 l~~~~~~~~~~p~l~~iG~~~~----~~~~~~~~~qa~~~a~~l~  341 (446)
                              ++.|+||++|++..    ......+..||+.+|.++.
T Consensus       277 --------t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~  313 (323)
T 3f8d_A          277 --------TSVPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAY  313 (323)
T ss_dssp             --------CSSTTEEECSTTBSTTTTCCCHHHHHHHHHHHHHHHH
T ss_pred             --------ecCCCEEEcceecCCCCcccceeehhhHHHHHHHHHH
Confidence                    45899999999875    3456778889999988875

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=100.00  E-value=1.8e-35  Score=280.11  Aligned_cols=272  Identities=14%  Similarity=0.170  Sum_probs=209.9

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCccc
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~   80 (446)
                      |++||+|||||++|+++|..|++.|++|+|||+++..++.+...                                 .. 
T Consensus         1 m~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~---------------------------------~~-   46 (297)
T 3fbs_A            1 MKFDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHS---------------------------------HG-   46 (297)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCC---------------------------------CS-
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhh---------------------------------cC-
Confidence            67899999999999999999999999999999975433222110                                 00 


Q ss_pred             CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEE
Q 013303           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV  159 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VV  159 (446)
                        ++           .....+..++.+++.++++++ ++.   .++++|+.+++.+ +.|.|++.++.    ++.||+||
T Consensus        47 --~~-----------~~~~~~~~~~~~~~~~~~~~~~~v~---~~~~~v~~i~~~~-~~~~v~~~~g~----~~~~d~vv  105 (297)
T 3fbs_A           47 --FL-----------GQDGKAPGEIIAEARRQIERYPTIH---WVEGRVTDAKGSF-GEFIVEIDGGR----RETAGRLI  105 (297)
T ss_dssp             --ST-----------TCTTCCHHHHHHHHHHHHTTCTTEE---EEESCEEEEEEET-TEEEEEETTSC----EEEEEEEE
T ss_pred             --Cc-----------CCCCCCHHHHHHHHHHHHHhcCCeE---EEEeEEEEEEEcC-CeEEEEECCCC----EEEcCEEE
Confidence              11           112345689999999999887 332   3367999999876 67998886653    79999999


Q ss_pred             EccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC--cccc-c
Q 013303          160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA--DETH-E  236 (446)
Q Consensus       160 vAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~--~~~~-~  236 (446)
                      +|||  +.|+.|.+||++.+.+..+|...+.+...+++++|+|||+|.+|+|+|..|++.+ +|+++.+.+.  ...+ +
T Consensus       106 iAtG--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~~~~~~~~~  182 (297)
T 3fbs_A          106 LAMG--VTDELPEIAGLRERWGSAVFHCPYCHGYELDQGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIVEPDADQHA  182 (297)
T ss_dssp             ECCC--CEEECCCCBTTGGGBTTTEESCHHHHTGGGTTCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTCCCCHHHHH
T ss_pred             ECCC--CCCCCCCCCCchhhcCCeeEEcccCcchhhcCCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCCCCCHHHHH
Confidence            9999  7899999999988777777777776666778999999999999999999999998 9999998764  1111 1


Q ss_pred             cCCCCC-CeeeccceeEEccCCcEEecCCcEEeecEEEEecCccCCCCCCCC---------CC-eeeeCCCCcccccccc
Q 013303          237 KQPGYD-NMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLET---------NG-IVTVDDNRVGPLYKHV  305 (446)
Q Consensus       237 ~~~~~~-~v~~~~~v~~i~~~~~v~~~dG~~~~~D~vi~atG~~~~~~~l~~---------~g-~i~~~~~~~~~l~~~~  305 (446)
                      .+.+.+ ++. ...|+++..++.|.+.||+++++|.||+|||+.|+.+++..         .| .+.+|++..       
T Consensus       183 ~l~~~gv~i~-~~~v~~i~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~g~~~~~~~~G~~i~vd~~~~-------  254 (297)
T 3fbs_A          183 LLAARGVRVE-TTRIREIAGHADVVLADGRSIALAGLFTQPKLRITVDWIEKLGCAVEEGPMGSTIVTDPMKQ-------  254 (297)
T ss_dssp             HHHHTTCEEE-CSCEEEEETTEEEEETTSCEEEESEEEECCEEECCCSCHHHHTCCEEEETTEEEECCCTTCB-------
T ss_pred             HHHHCCcEEE-cceeeeeecCCeEEeCCCCEEEEEEEEEccCcccCchhHHhcCCccccCCCCceEEeCCCCc-------
Confidence            111222 343 36888887754699999999999999999999999988642         23 466665544       


Q ss_pred             cCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHc
Q 013303          306 FPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLS  341 (446)
Q Consensus       306 ~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~  341 (446)
                         ++.|+||++|++.. ......+..||+.+|.++.
T Consensus       255 ---t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~  288 (297)
T 3fbs_A          255 ---TTARGIFACGDVARPAGSVALAVGDGAMAGAAAH  288 (297)
T ss_dssp             ---CSSTTEEECSGGGCTTCCHHHHHHHHHHHHHHHH
T ss_pred             ---cCCCCEEEEeecCCchHHHHHHHHhHHHHHHHHH
Confidence               55899999999876 5567788899999998874

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=100.00  E-value=6.8e-35  Score=280.24  Aligned_cols=278  Identities=21%  Similarity=0.243  Sum_probs=211.4

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d   82 (446)
                      +||+|||||++|+++|..|++.|++|+|||+. .+||.|......                              ..++.
T Consensus         9 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~~------------------------------~~~~~   57 (325)
T 2q7v_A            9 YDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQIAWSEEV------------------------------ENFPG   57 (325)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGGCSCB------------------------------CCSTT
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCccccccccc------------------------------ccCCC
Confidence            68999999999999999999999999999998 789998763100                              00111


Q ss_pred             CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEc--CCCceEEEEEeCCCceEEEEEcEEEE
Q 013303           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV--ESNKWKVKSRKKDDVVEEETFDAVVV  160 (446)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~--~~~~~~v~~~~~~~~~~~~~~d~VVv  160 (446)
                      +             +...++.++.+++.++++++++.  +++ ++|..++..  ++..|+|.+.++.    ++.||+||+
T Consensus        58 ~-------------~~~~~~~~~~~~l~~~~~~~gv~--~~~-~~v~~i~~~~~~~~~~~v~~~~g~----~~~~~~vv~  117 (325)
T 2q7v_A           58 F-------------PEPIAGMELAQRMHQQAEKFGAK--VEM-DEVQGVQHDATSHPYPFTVRGYNG----EYRAKAVIL  117 (325)
T ss_dssp             C-------------SSCBCHHHHHHHHHHHHHHTTCE--EEE-CCEEEEEECTTSSSCCEEEEESSC----EEEEEEEEE
T ss_pred             C-------------CCCCCHHHHHHHHHHHHHHcCCE--EEe-eeEEEEEeccCCCceEEEEECCCC----EEEeCEEEE
Confidence            1             11235678999999999999987  666 689999876  4123888776653    799999999


Q ss_pred             ccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC----ccccc
Q 013303          161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETHE  236 (446)
Q Consensus       161 AtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~----~~~~~  236 (446)
                      |||  +.|+.|.+||.+.+.+..+|+..+.+...+.+++|+|||+|.+|+|+|..|++.+.+|+++.+++.    ....+
T Consensus       118 AtG--~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~  195 (325)
T 2q7v_A          118 ATG--ADPRKLGIPGEDNFWGKGVSTCATCDGFFYKGKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRANKVAQA  195 (325)
T ss_dssp             CCC--EEECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCSCHHHHH
T ss_pred             CcC--CCcCCCCCCChhhccCceEEEeccCCHHHcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCcchHHHH
Confidence            999  778899999998777766776555444456789999999999999999999999999999998764    11222


Q ss_pred             cCCCCC--CeeeccceeEEccCC---cEEec---CCc--EEeecEEEEecCccCCCCCCCC------CCeeeeCCCCccc
Q 013303          237 KQPGYD--NMWLHSMVERANEDG---TVVFR---NGR--VVSADVIMHCTGYKYNYPFLET------NGIVTVDDNRVGP  300 (446)
Q Consensus       237 ~~~~~~--~v~~~~~v~~i~~~~---~v~~~---dG~--~~~~D~vi~atG~~~~~~~l~~------~g~i~~~~~~~~~  300 (446)
                      ++.+..  ++.....|.++..++   .|.+.   +|+  ++++|.||+|||++|+.+++..      .|.+.+|++.+  
T Consensus       196 ~l~~~~gv~i~~~~~v~~i~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~~~--  273 (325)
T 2q7v_A          196 RAFANPKMKFIWDTAVEEIQGADSVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKDTVSLRDDGYVDVRDEIY--  273 (325)
T ss_dssp             HHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTTSCBCTTSCBCCBTTTB--
T ss_pred             HHHhcCCceEecCCceEEEccCCcEEEEEEEECCCCcEEEEEcCEEEEccCCCCChHHHhhhcccCCCccEecCCCCc--
Confidence            332222  455567888887654   36776   676  6889999999999999888753      34455554433  


Q ss_pred             ccccccCCCCCCCeEEecCCCcc--CchhHHHHHHHHHHHHHcCC
Q 013303          301 LYKHVFPPVLAPGLSFVGIPQKV--IPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       301 l~~~~~~~~~~p~l~~iG~~~~~--~~~~~~~~qa~~~a~~l~g~  343 (446)
                              ++.|+||++|++...  .....+..||+.+|.++...
T Consensus       274 --------t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~  310 (325)
T 2q7v_A          274 --------TNIPMLFAAGDVSDYIYRQLATSVGAGTRAAMMTERQ  310 (325)
T ss_dssp             --------CSSTTEEECSTTTCSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             --------cCCCCEEEeecccCccHHHHHHHHHHHHHHHHHHHHH
Confidence                    458999999998653  45677889999999888643

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=100.00  E-value=3.5e-35  Score=283.35  Aligned_cols=281  Identities=18%  Similarity=0.204  Sum_probs=209.6

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d   82 (446)
                      +||+|||||++|+++|..|++.|++|+|||+.+.+||.|....          |+     ..+|            .++.
T Consensus         6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~----------~~-----~~~~------------~~~~   58 (335)
T 2zbw_A            6 TDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTALY----------PE-----KYIY------------DVAG   58 (335)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHTC----------TT-----SEEC------------CSTT
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeccC----------CC-----ceee------------ccCC
Confidence            6899999999999999999999999999999999999986420          00     0000            0111


Q ss_pred             CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEcc
Q 013303           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN  162 (446)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAt  162 (446)
                      ++              .....++.+++.++++++++.  ++++++|..++..+ +.|+|++.++.    ++.||+||+||
T Consensus        59 ~~--------------~~~~~~~~~~l~~~~~~~~~~--~~~~~~v~~i~~~~-~~~~v~~~~g~----~~~~~~lv~At  117 (335)
T 2zbw_A           59 FP--------------KVYAKDLVKGLVEQVAPFNPV--YSLGERAETLEREG-DLFKVTTSQGN----AYTAKAVIIAA  117 (335)
T ss_dssp             CS--------------SEEHHHHHHHHHHHHGGGCCE--EEESCCEEEEEEET-TEEEEEETTSC----EEEEEEEEECC
T ss_pred             CC--------------CCCHHHHHHHHHHHHHHcCCE--EEeCCEEEEEEECC-CEEEEEECCCC----EEEeCEEEECC
Confidence            11              124578899999999988876  88999999999876 57888765442    68999999999


Q ss_pred             CCCC-CCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc-------cc
Q 013303          163 GHFS-VPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD-------ET  234 (446)
Q Consensus       163 G~~s-~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~-------~~  234 (446)
                      |..+ .|+.|+++|.+.+.+..+|.. +++.+.+.+++|+|||+|.+|+|+|..|++.+.+|+++.|++..       ..
T Consensus       118 G~~~~~p~~~~i~g~~~~~~~~~~~~-~~~~~~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~~~~~~~~  196 (335)
T 2zbw_A          118 GVGAFEPRRIGAPGEREFEGRGVYYA-VKSKAEFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRAHEASVKE  196 (335)
T ss_dssp             TTSEEEECCCCCTTTTTTBTTTEESS-CSCGGGGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCSCHHHHHH
T ss_pred             CCCCCCCCCCCCCChhhccCcEEEEe-cCchhhcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCccHHHHHH
Confidence            9533 688888999877766545443 44555667899999999999999999999999999999998741       11


Q ss_pred             ccc-CCC-CCCeeeccceeEEccCC---cEEec---CC--cEEeecEEEEecCccCCCCCCCC------CCeeeeCCCCc
Q 013303          235 HEK-QPG-YDNMWLHSMVERANEDG---TVVFR---NG--RVVSADVIMHCTGYKYNYPFLET------NGIVTVDDNRV  298 (446)
Q Consensus       235 ~~~-~~~-~~~v~~~~~v~~i~~~~---~v~~~---dG--~~~~~D~vi~atG~~~~~~~l~~------~g~i~~~~~~~  298 (446)
                      +.+ +.+ .-++.....|.++..++   .|.+.   +|  +++++|.||+|+|++|+.+++..      .|.+.+|+..+
T Consensus       197 l~~~l~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~~~  276 (335)
T 2zbw_A          197 LMKAHEEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLANWGLALEKNKIKVDTTMA  276 (335)
T ss_dssp             HHHHHHTTSSEEETTEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEEEECGGGGGSCCCEETTEEECCTTCB
T ss_pred             HHhccccCCeEEecCCcceeEccCCCeeEEEEEECCCCceEEEecCEEEEeecCCCCchHhhhcceeccCCeeeeCCCCC
Confidence            111 111 12455566788887654   37776   78  56899999999999999887754      34455655443


Q ss_pred             ccccccccCCCCCCCeEEecCCCcc----CchhHHHHHHHHHHHHHcC
Q 013303          299 GPLYKHVFPPVLAPGLSFVGIPQKV----IPFPFFELQSKWIASVLSG  342 (446)
Q Consensus       299 ~~l~~~~~~~~~~p~l~~iG~~~~~----~~~~~~~~qa~~~a~~l~g  342 (446)
                                ++.|+||++|++...    .....+..||+.+|+++.+
T Consensus       277 ----------t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~  314 (335)
T 2zbw_A          277 ----------TSIPGVYACGDIVTYPGKLPLIVLGFGEAAIAANHAAA  314 (335)
T ss_dssp             ----------CSSTTEEECSTTEECTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             ----------CCCCCEEEeccccccCcchhhhhhhHHHHHHHHHHHHH
Confidence                      458999999998632    3456677899998888753

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=100.00  E-value=3.6e-35  Score=283.32  Aligned_cols=287  Identities=17%  Similarity=0.189  Sum_probs=212.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEee----CCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEK----GEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPREL   77 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~----~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~   77 (446)
                      ++||+|||||++||++|..|++.|++|+|||+    ...+||.|.+...                              .
T Consensus        22 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~------------------------------~   71 (338)
T 3itj_A           22 HNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTE------------------------------I   71 (338)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSE------------------------------E
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchh------------------------------h
Confidence            57999999999999999999999999999999    4478898876310                              0


Q ss_pred             cccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcE
Q 013303           78 MGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA  157 (446)
Q Consensus        78 ~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~  157 (446)
                      ..++.             .+.+.+..++.+++.++++++++.  +++++ |..++... +.|++.+.... ...++.||+
T Consensus        72 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~gv~--i~~~~-v~~i~~~~-~~~~v~~~~~~-~~~~~~~d~  133 (338)
T 3itj_A           72 ENFPG-------------FPDGLTGSELMDRMREQSTKFGTE--IITET-VSKVDLSS-KPFKLWTEFNE-DAEPVTTDA  133 (338)
T ss_dssp             CCSTT-------------CTTCEEHHHHHHHHHHHHHHTTCE--EECSC-EEEEECSS-SSEEEEETTCS-SSCCEEEEE
T ss_pred             cccCC-------------CcccCCHHHHHHHHHHHHHHcCCE--EEEeE-EEEEEEcC-CEEEEEEEecC-CCcEEEeCE
Confidence            00111             123345789999999999999988  88888 99998776 67877763211 113689999


Q ss_pred             EEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCC--CCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc---
Q 013303          158 VVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN--PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD---  232 (446)
Q Consensus       158 VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~--~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~---  232 (446)
                      ||+|||  +.|+.|.+||.+.+.+..+++..+....  .+.+++|+|||+|.+|+|+|..|++.+.+|+++.+.+..   
T Consensus       134 vvlAtG--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~~  211 (338)
T 3itj_A          134 IILATG--ASAKRMHLPGEETYWQKGISACAVCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRAS  211 (338)
T ss_dssp             EEECCC--EEECCCCCTTHHHHBTTTEESCHHHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCSC
T ss_pred             EEECcC--CCcCCCCCCCchhccCccEEEchhcccchhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCCC
Confidence            999999  7899999999876666666665543333  567899999999999999999999999999999998751   


Q ss_pred             -cccccCCCC--CCeeeccceeEEccCCc----EEecC-----CcEEeecEEEEecCccCCCCCCCCCCeeeeCCCCccc
Q 013303          233 -ETHEKQPGY--DNMWLHSMVERANEDGT----VVFRN-----GRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGP  300 (446)
Q Consensus       233 -~~~~~~~~~--~~v~~~~~v~~i~~~~~----v~~~d-----G~~~~~D~vi~atG~~~~~~~l~~~g~i~~~~~~~~~  300 (446)
                       .....+.+.  .++.....|.++..++.    |++.+     ++++++|.||+|||+.|+.+++.. + +.++++....
T Consensus       212 ~~~~~~l~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~-l~~~~~G~i~  289 (338)
T 3itj_A          212 TIMQKRAEKNEKIEILYNTVALEAKGDGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAG-Q-VDTDEAGYIK  289 (338)
T ss_dssp             HHHHHHHHHCTTEEEECSEEEEEEEESSSSEEEEEEEETTTTEEEEEECSEEEECSCEEECCGGGBT-T-BCBCTTSCBC
T ss_pred             HHHHHHHHhcCCeEEeecceeEEEEcccCcEEEEEEEECCCCceEEEEeCEEEEEeCCCCChhHhhC-c-eEecCCCcEE
Confidence             112222222  24556678888876653    77776     467899999999999999988765 3 4444333211


Q ss_pred             ccccccCCCCCCCeEEecCCCc--cCchhHHHHHHHHHHHHHc
Q 013303          301 LYKHVFPPVLAPGLSFVGIPQK--VIPFPFFELQSKWIASVLS  341 (446)
Q Consensus       301 l~~~~~~~~~~p~l~~iG~~~~--~~~~~~~~~qa~~~a~~l~  341 (446)
                      ..+..+. ++.|+||++|++..  ......+..||+.+|.++.
T Consensus       290 v~~~~~~-t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~  331 (338)
T 3itj_A          290 TVPGSSL-TSVPGFFAAGDVQDSKYRQAITSAGSGCMAALDAE  331 (338)
T ss_dssp             CCTTSSB-CSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHH
T ss_pred             EcCcccc-cCCCCEEEeeccCCCCccceeeehhhhHHHHHHHH
Confidence            1222233 44899999999874  3456677889999888775

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=100.00  E-value=1.2e-34  Score=276.77  Aligned_cols=284  Identities=18%  Similarity=0.216  Sum_probs=208.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCccc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~   80 (446)
                      ++||+|||||++|+++|..|++.|+ +|+|||+. .+||.|......                              ..+
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~-~~gg~~~~~~~~------------------------------~~~   49 (311)
T 2q0l_A            1 MIDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG-MPGGQITGSSEI------------------------------ENY   49 (311)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCSSEEEECSS-STTCGGGGCSCB------------------------------CCS
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCcEEEEcCC-CCCccccccccc------------------------------ccC
Confidence            4799999999999999999999999 99999994 688888753100                              001


Q ss_pred             CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEE
Q 013303           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV  160 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVv  160 (446)
                      +.+             +...+..++.+++.++++++++.  +++ ++|..++... +.|+|++.++.    ++.||+||+
T Consensus        50 ~~~-------------~~~~~~~~~~~~l~~~~~~~~v~--~~~-~~v~~i~~~~-~~~~v~~~~g~----~~~~~~vv~  108 (311)
T 2q0l_A           50 PGV-------------KEVVSGLDFMQPWQEQCFRFGLK--HEM-TAVQRVSKKD-SHFVILAEDGK----TFEAKSVII  108 (311)
T ss_dssp             TTC-------------CSCBCHHHHHHHHHHHHHTTSCE--EEC-SCEEEEEEET-TEEEEEETTSC----EEEEEEEEE
T ss_pred             CCC-------------cccCCHHHHHHHHHHHHHHcCCE--EEE-EEEEEEEEcC-CEEEEEEcCCC----EEECCEEEE
Confidence            111             12345688999999999998887  776 7899998876 66888765443    789999999


Q ss_pred             ccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc----cccc
Q 013303          161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD----ETHE  236 (446)
Q Consensus       161 AtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~----~~~~  236 (446)
                      |||  +.|+.|++||.+.|.+..+|+..+.+...+.+++|+|||+|.+|+|+|..|++.+.+|+++.+++..    ...+
T Consensus       109 AtG--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~  186 (311)
T 2q0l_A          109 ATG--GSPKRTGIKGESEYWGKGVSTCATCDGFFYKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFRCAPITLE  186 (311)
T ss_dssp             CCC--EEECCCCCBTHHHHBTTTEESCHHHHGGGGTTSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCCSCHHHHH
T ss_pred             CCC--CCCCCCCCCChhhccCCcEEEeecCChhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccCCCHHHHH
Confidence            999  7889999999876655666665444444567899999999999999999999999999999987641    1222


Q ss_pred             cCCCCC--CeeeccceeEEccC-C---cEEec---CCc--EEeecEEEEecCccCCCCCCCCCC---eeeeCCCCccccc
Q 013303          237 KQPGYD--NMWLHSMVERANED-G---TVVFR---NGR--VVSADVIMHCTGYKYNYPFLETNG---IVTVDDNRVGPLY  302 (446)
Q Consensus       237 ~~~~~~--~v~~~~~v~~i~~~-~---~v~~~---dG~--~~~~D~vi~atG~~~~~~~l~~~g---~i~~~~~~~~~l~  302 (446)
                      ++.+..  ++.....|.++..+ +   .|.+.   +|+  ++++|.||+|+|+.|+.+++...+   .+.++++......
T Consensus       187 ~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~l~~~~~g~i~vd  266 (311)
T 2q0l_A          187 HAKNNDKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVD  266 (311)
T ss_dssp             HHHTCTTEEEETTEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCC
T ss_pred             HHhhCCCeEEEeCCEEEEEECCCCcEeEEEEEecCCCceEEEecCEEEEEecCccChhhhhcccccceeEeccCCCEEeC
Confidence            232222  44556678888754 3   26776   676  688999999999999988875442   1333332221111


Q ss_pred             ccccCCCCCCCeEEecCCCcc--CchhHHHHHHHHHHHHHc
Q 013303          303 KHVFPPVLAPGLSFVGIPQKV--IPFPFFELQSKWIASVLS  341 (446)
Q Consensus       303 ~~~~~~~~~p~l~~iG~~~~~--~~~~~~~~qa~~~a~~l~  341 (446)
                       ..+. ++.|+||++|++...  .....+..||+.+|.++.
T Consensus       267 -~~~~-t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~  305 (311)
T 2q0l_A          267 -FSMK-TNVQGLFAAGDIRIFAPKQVVCAASDGATAALSVI  305 (311)
T ss_dssp             -TTCB-CSSTTEEECSTTBTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             -Cccc-cCCCCeEEcccccCcchHHHHHHHHhHHHHHHHHH
Confidence             1223 458999999998753  456778899999998875

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=100.00  E-value=3.4e-34  Score=279.32  Aligned_cols=283  Identities=20%  Similarity=0.258  Sum_probs=210.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      ++||+|||||++|+++|..|++.|++|+|||+.+.+||.|....          |.     ...|            .++
T Consensus        14 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~----------~~-----~~~~------------~~~   66 (360)
T 3ab1_A           14 MRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALY----------PE-----KHIY------------DVA   66 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTC----------TT-----SEEC------------CST
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccccC----------CC-----cccc------------cCC
Confidence            46999999999999999999999999999999999999986420          00     0000            000


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                      .++              .....++.+++.+.++++++.  ++++++|+.++...++.|+|++.++.    ++.||+||+|
T Consensus        67 ~~~--------------~~~~~~~~~~l~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~v~~~~g~----~~~~~~li~A  126 (360)
T 3ab1_A           67 GFP--------------EVPAIDLVESLWAQAERYNPD--VVLNETVTKYTKLDDGTFETRTNTGN----VYRSRAVLIA  126 (360)
T ss_dssp             TCS--------------SEEHHHHHHHHHHHHHTTCCE--EECSCCEEEEEECTTSCEEEEETTSC----EEEEEEEEEC
T ss_pred             CCC--------------CCCHHHHHHHHHHHHHHhCCE--EEcCCEEEEEEECCCceEEEEECCCc----EEEeeEEEEc
Confidence            111              124578899999999988876  88999999999875347888875543    7899999999


Q ss_pred             cCCCC-CCccCCCCC-CCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC----cccc
Q 013303          162 NGHFS-VPRLAQVPG-IDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETH  235 (446)
Q Consensus       162 tG~~s-~p~~p~i~G-~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~----~~~~  235 (446)
                      ||..+ .|..|.+|| .+.+.+..+|.. +++...+.+++|+|||+|.+|+|+|..|++.+.+|+++.+++.    ....
T Consensus       127 tG~~~~~~~~~~i~g~~~~~~~~~v~~~-~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~  205 (360)
T 3ab1_A          127 AGLGAFEPRKLPQLGNIDHLTGSSVYYA-VKSVEDFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGHGKTA  205 (360)
T ss_dssp             CTTCSCCBCCCGGGCCCTTTBTTTEESS-CSCGGGGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSSCSHHH
T ss_pred             cCCCcCCCCCCCCCCchhhCcCceEEEe-cCCHHHcCCCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCCCHHHH
Confidence            99644 688888999 777766545543 4555567899999999999999999999999999999998764    1111


Q ss_pred             ccCCC---C--CCeeeccceeEEccC-C---cEEec--CC--cEEeecEEEEecCccCCCCCCCC------CCeeeeCCC
Q 013303          236 EKQPG---Y--DNMWLHSMVERANED-G---TVVFR--NG--RVVSADVIMHCTGYKYNYPFLET------NGIVTVDDN  296 (446)
Q Consensus       236 ~~~~~---~--~~v~~~~~v~~i~~~-~---~v~~~--dG--~~~~~D~vi~atG~~~~~~~l~~------~g~i~~~~~  296 (446)
                      ..+.+   .  .++.....|.++..+ +   .|.+.  +|  +++++|.||+|||+.|+.+++..      .|.+.+|+.
T Consensus       206 ~~l~~~~~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~  285 (360)
T 3ab1_A          206 HEVERARANGTIDVYLETEVASIEESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARWDLELYENALVVDSH  285 (360)
T ss_dssp             HSSHHHHHHTSEEEESSEEEEEEEEETTEEEEEEEEETTCCEEEEECSEEEECCCBCCSCGGGGGSSCCEETTEEECCTT
T ss_pred             HHHHHHhhcCceEEEcCcCHHHhccCCCceEEEEEEecCCCeEEEeCCEEEECCCCCCCHHHHHhhccccccCeeeecCC
Confidence            11111   1  244555678888654 3   36665  88  56899999999999999887653      345666654


Q ss_pred             CcccccccccCCCCCCCeEEecCCCcc----CchhHHHHHHHHHHHHHcC
Q 013303          297 RVGPLYKHVFPPVLAPGLSFVGIPQKV----IPFPFFELQSKWIASVLSG  342 (446)
Q Consensus       297 ~~~~l~~~~~~~~~~p~l~~iG~~~~~----~~~~~~~~qa~~~a~~l~g  342 (446)
                      .+          ++.|+||++|++...    .....+..||+.+|.++.+
T Consensus       286 ~~----------t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~  325 (360)
T 3ab1_A          286 MK----------TSVDGLYAAGDIAYYPGKLKIIQTGLSEATMAVRHSLS  325 (360)
T ss_dssp             SB----------CSSTTEEECSTTEECTTCCCSHHHHHHHHHHHHHHHHH
T ss_pred             Cc----------CCCCCEEEecCccCCCCccceeehhHHHHHHHHHHHHh
Confidence            44          458999999998642    3456677899998888764

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=100.00  E-value=4.9e-34  Score=272.62  Aligned_cols=276  Identities=24%  Similarity=0.262  Sum_probs=210.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEE-EeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCccc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVV-YEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v-~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~   80 (446)
                      ++||+|||||+|||++|..|++.|++|+| +|+ +.+||.|.+....                                 
T Consensus         4 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~~~~~~~~---------------------------------   49 (315)
T 3r9u_A            4 MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQITSSSEI---------------------------------   49 (315)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGGGGGCSCB---------------------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCceeeeecee---------------------------------
Confidence            57999999999999999999999999999 999 7789998763110                                 


Q ss_pred             CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCC-CceEEEEEeCCCceEEEEEcEEE
Q 013303           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRKKDDVVEEETFDAVV  159 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~-~~~~v~~~~~~~~~~~~~~d~VV  159 (446)
                      ..+|.          .+.+.+..++.+|+.++++++++.  ++++ +|..+ +..+ +.|.+.+....    ++.||+||
T Consensus        50 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~v~--~~~~-~v~~i-~~~~~~~~~v~~~~~~----~~~~d~lv  111 (315)
T 3r9u_A           50 ENYPG----------VAQVMDGISFMAPWSEQCMRFGLK--HEMV-GVEQI-LKNSDGSFTIKLEGGK----TELAKAVI  111 (315)
T ss_dssp             CCSTT----------CCSCBCHHHHHHHHHHHHTTTCCE--EECC-CEEEE-EECTTSCEEEEETTSC----EEEEEEEE
T ss_pred             ccCCC----------CCCCCCHHHHHHHHHHHHHHcCcE--EEEE-EEEEE-ecCCCCcEEEEEecCC----EEEeCEEE
Confidence            00111          122346789999999999999987  7777 88888 4431 46875443322    78999999


Q ss_pred             EccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc----ccc
Q 013303          160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD----ETH  235 (446)
Q Consensus       160 vAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~----~~~  235 (446)
                      +|||  +.|+.|.+||.+.+.+..+|+..+.....+.+++|+|||+|.+|+|+|..|++.+.+|+++.+.+..    ..+
T Consensus       112 lAtG--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~  189 (315)
T 3r9u_A          112 VCTG--SAPKKAGFKGEDEFFGKGVSTCATCDGFFYKNKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFRAAPSTV  189 (315)
T ss_dssp             ECCC--EEECCCCCBTTTTTBTTTEESCHHHHGGGGTTSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCBSCHHHH
T ss_pred             EeeC--CCCCCCCCCChhhcCCCeEEeeecccccccCcCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCCCCHHHH
Confidence            9999  7899999999988877888877766656678899999999999999999999999999999987751    112


Q ss_pred             ccCCCCC--CeeeccceeEEccCC----cEEec--CCc--EEeecEEEEecCccCCCCCCCC-----------CCeeeeC
Q 013303          236 EKQPGYD--NMWLHSMVERANEDG----TVVFR--NGR--VVSADVIMHCTGYKYNYPFLET-----------NGIVTVD  294 (446)
Q Consensus       236 ~~~~~~~--~v~~~~~v~~i~~~~----~v~~~--dG~--~~~~D~vi~atG~~~~~~~l~~-----------~g~i~~~  294 (446)
                      .++.+..  ++..+..|.++..++    .|++.  +|+  ++++|.||+|+|+.|+.++++.           .|.+.+|
T Consensus       190 ~~~~~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i~vd  269 (315)
T 3r9u_A          190 EKVKKNEKIELITSASVDEVYGDKMGVAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVD  269 (315)
T ss_dssp             HHHHHCTTEEEECSCEEEEEEEETTEEEEEEEECTTSCEEEECCSCEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCC
T ss_pred             HHHHhcCCeEEEeCcEEEEEEcCCCcEEEEEEEcCCCCeEEeecCeEEEEEcCCCCchhhhcccccceeeecCCCcEEeC
Confidence            2222222  555677888887654    26666  886  6889999999999999887654           2334444


Q ss_pred             CCCcccccccccCCCCCCCeEEecCCCc--cCchhHHHHHHHHHHHHHc
Q 013303          295 DNRVGPLYKHVFPPVLAPGLSFVGIPQK--VIPFPFFELQSKWIASVLS  341 (446)
Q Consensus       295 ~~~~~~l~~~~~~~~~~p~l~~iG~~~~--~~~~~~~~~qa~~~a~~l~  341 (446)
                      +..+          ++.|+||++|++..  ......+..||+.+|.++.
T Consensus       270 ~~~~----------t~~~~v~a~GD~~~~~~~~~~~A~~~g~~aa~~i~  308 (315)
T 3r9u_A          270 LKMQ----------TSVAGLFAAGDLRKDAPKQVICAAGDGAVAALSAM  308 (315)
T ss_dssp             TTCB----------CSSTTEEECGGGBTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCcc----------cCCCCEEEeecccCCchhhhhhHHhhHHHHHHHHH
Confidence            4333          45899999999863  3456778889999998874

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=100.00  E-value=5.8e-34  Score=271.79  Aligned_cols=276  Identities=18%  Similarity=0.198  Sum_probs=206.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .+||+|||||++|+++|..|++.|++|+|||+  .+||.|.....                                 +.
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~--~~gG~~~~~~~---------------------------------~~   45 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGE--RFGGQILDTVD---------------------------------IE   45 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECS--STTGGGGGCCE---------------------------------EC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeC--CCCceeccccc---------------------------------cc
Confidence            36999999999999999999999999999986  57898875210                                 00


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCC--CceEEEEEeCCCceEEEEEcEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES--NKWKVKSRKKDDVVEEETFDAVV  159 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~--~~~~v~~~~~~~~~~~~~~d~VV  159 (446)
                      .++           ...+.+..++.+++.+++++++++  ++++++|..+++..+  +.|.|++.++.    ++.||+||
T Consensus        46 ~~~-----------~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~~~~~~~~v~~~~g~----~~~~~~lv  108 (310)
T 1fl2_A           46 NYI-----------SVPKTEGQKLAGALKVHVDEYDVD--VIDSQSASKLIPAAVEGGLHQIETASGA----VLKARSII  108 (310)
T ss_dssp             CBT-----------TBSSEEHHHHHHHHHHHHHTSCEE--EECSCCEEEEECCSSTTCCEEEEETTSC----EEEEEEEE
T ss_pred             ccc-----------CcCCCCHHHHHHHHHHHHHHcCCe--EEccCEEEEEEecccCCceEEEEECCCC----EEEeCEEE
Confidence            000           011234578999999999998887  889999999986531  36888876543    68999999


Q ss_pred             EccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc---c-cc
Q 013303          160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD---E-TH  235 (446)
Q Consensus       160 vAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~---~-~~  235 (446)
                      +|||  +.|..|++||.+.+.+..+|+........+.+++|+|||+|.+|+|+|..|++.+.+|+++.+.+..   . ..
T Consensus       109 ~AtG--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~  186 (310)
T 1fl2_A          109 VATG--AKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQ  186 (310)
T ss_dssp             ECCC--EEECCCCCTTTTTTBTTTEESCHHHHGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCSCHHHH
T ss_pred             ECcC--CCcCCCCCCChhhcccceeEEeccCcHhhcCCCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccCccHHHH
Confidence            9999  6788889999887766666655443334457899999999999999999999999999999988751   1 11


Q ss_pred             ccCCCCC--CeeeccceeEEccCC----cEEecC---Cc--EEeecEEEEecCccCCCCCCCC------CCeeeeCCCCc
Q 013303          236 EKQPGYD--NMWLHSMVERANEDG----TVVFRN---GR--VVSADVIMHCTGYKYNYPFLET------NGIVTVDDNRV  298 (446)
Q Consensus       236 ~~~~~~~--~v~~~~~v~~i~~~~----~v~~~d---G~--~~~~D~vi~atG~~~~~~~l~~------~g~i~~~~~~~  298 (446)
                      +.+.+..  ++.....|.++..++    .|.+.+   |+  ++++|.||+|+|+.|+.+++..      .|.+.+|+..+
T Consensus       187 ~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~l~~~~~g~i~vd~~~~  266 (310)
T 1fl2_A          187 DKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGAVERNRMGEIIIDAKCE  266 (310)
T ss_dssp             HHHHTCTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTTSCBCTTSCBCCCTTCB
T ss_pred             HHHhhCCCeEEecCCceEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeeCCccCchHHhccccccCCCcEEcCCCCc
Confidence            2222222  455566888887542    266764   54  5789999999999999887753      34454554433


Q ss_pred             ccccccccCCCCCCCeEEecCCCccC--chhHHHHHHHHHHHHHc
Q 013303          299 GPLYKHVFPPVLAPGLSFVGIPQKVI--PFPFFELQSKWIASVLS  341 (446)
Q Consensus       299 ~~l~~~~~~~~~~p~l~~iG~~~~~~--~~~~~~~qa~~~a~~l~  341 (446)
                                ++.|+||++|++....  ....+..||+.+|.++.
T Consensus       267 ----------t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~  301 (310)
T 1fl2_A          267 ----------TNVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAF  301 (310)
T ss_dssp             ----------CSSTTEEECSTTBSCSSCCHHHHHHHHHHHHHHHH
T ss_pred             ----------cCCCCEEEeecccCCcchhhhhhHhhHHHHHHHHH
Confidence                      4589999999987543  45677889999888775

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=100.00  E-value=1.9e-33  Score=269.38  Aligned_cols=281  Identities=18%  Similarity=0.198  Sum_probs=204.1

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d   82 (446)
                      +||+|||||++|+++|..|++.|++|+|||+ ..+||.|......                              ..++.
T Consensus        17 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~~~~~~~------------------------------~~~~~   65 (319)
T 3cty_A           17 FDVVIVGAGAAGFSAAVYAARSGFSVAILDK-AVAGGLTAEAPLV------------------------------ENYLG   65 (319)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SSTTGGGGGCSCB------------------------------CCBTT
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCcEEEEeC-CCCCccccccchh------------------------------hhcCC
Confidence            6899999999999999999999999999999 5788888753100                              00000


Q ss_pred             CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEcc
Q 013303           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN  162 (446)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAt  162 (446)
                      +              ......++.+++.++++++++.  +++ .+|..++... +.|+|.+ ++.    ++.||+||+||
T Consensus        66 ~--------------~~~~~~~~~~~~~~~~~~~~v~--~~~-~~v~~i~~~~-~~~~v~~-~~~----~~~~~~li~At  122 (319)
T 3cty_A           66 F--------------KSIVGSELAKLFADHAANYAKI--REG-VEVRSIKKTQ-GGFDIET-NDD----TYHAKYVIITT  122 (319)
T ss_dssp             B--------------SSBCHHHHHHHHHHHHHTTSEE--EET-CCEEEEEEET-TEEEEEE-SSS----EEEEEEEEECC
T ss_pred             C--------------cccCHHHHHHHHHHHHHHcCCE--EEE-eeEEEEEEeC-CEEEEEE-CCC----EEEeCEEEECC
Confidence            1              1234578889999999988876  666 7899998765 6688766 322    68999999999


Q ss_pred             CCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc----cccccC
Q 013303          163 GHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD----ETHEKQ  238 (446)
Q Consensus       163 G~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~----~~~~~~  238 (446)
                      |  +.|+.|.+||.+.+.+..+|.....+...+.+++|+|||+|.+|+|+|..|++.+.+|+++++.+..    ...+.+
T Consensus       123 G--~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~~~~l~~~l  200 (319)
T 3cty_A          123 G--TTHKHLGVKGESEYFGKGTSYCSTCDGYLFKGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMCENAYVQEI  200 (319)
T ss_dssp             C--EEECCCCCBTTTTTBTTTEESCHHHHGGGGBTSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCCSCHHHHHHH
T ss_pred             C--CCcccCCCCChHHhCCceEEEEEecchhhcCCCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccCCCHHHHHHH
Confidence            9  7788999999877655556654433333457899999999999999999999999999999987641    111112


Q ss_pred             CC-CCCeeeccceeEEccCC----cEEec---CCc--EEeecEEEEecCccCCCCCCCCCCeeeeCCCCcccccccccCC
Q 013303          239 PG-YDNMWLHSMVERANEDG----TVVFR---NGR--VVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVFPP  308 (446)
Q Consensus       239 ~~-~~~v~~~~~v~~i~~~~----~v~~~---dG~--~~~~D~vi~atG~~~~~~~l~~~g~i~~~~~~~~~l~~~~~~~  308 (446)
                      .+ ..++.....|.++..++    .|.+.   +|+  ++++|.||+|||+.|+.+++...| +.+++........+ +. 
T Consensus       201 ~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~g-l~~~~~g~i~vd~~-~~-  277 (319)
T 3cty_A          201 KKRNIPYIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDSG-VKLDERGYIVVDSR-QR-  277 (319)
T ss_dssp             HHTTCCEECSEEEEEEEESSSSEEEEEEEETTTCCEEEECCSEEEECCCEEECCGGGTTSC-CCBCTTSCBCCCTT-CB-
T ss_pred             hcCCcEEEcCCeEEEEecCCceEEEEEEEEcCCCceEEEecCEEEEeeCCccChHHHhhcc-ccccCCccEeCCCC-Cc-
Confidence            22 22566677888887653    26675   676  588999999999999998876433 33332221111111 23 


Q ss_pred             CCCCCeEEecCCCcc--CchhHHHHHHHHHHHHHcC
Q 013303          309 VLAPGLSFVGIPQKV--IPFPFFELQSKWIASVLSG  342 (446)
Q Consensus       309 ~~~p~l~~iG~~~~~--~~~~~~~~qa~~~a~~l~g  342 (446)
                      ++.|+||++|++...  .....+..||+.+|.++..
T Consensus       278 t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~  313 (319)
T 3cty_A          278 TSVPGVYAAGDVTSGNFAQIASAVGDGCKAALSLYS  313 (319)
T ss_dssp             CSSTTEEECSTTBTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEeecccCcchhhHHHHHHHHHHHHHHHHH
Confidence            458999999998754  4567788899999888753

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=100.00  E-value=1.9e-33  Score=271.36  Aligned_cols=282  Identities=20%  Similarity=0.229  Sum_probs=204.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      ++||+|||||++|+++|..|++.|++|+|||+. .+||.|.+....                              ..++
T Consensus        14 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~~------------------------------~~~~   62 (335)
T 2a87_A           14 VRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT-SFGGALMTTTDV------------------------------ENYP   62 (335)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS-SCSCGGGSCSCB------------------------------CCST
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceeccchh------------------------------hhcC
Confidence            469999999999999999999999999999975 788888653100                              0011


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEE-EEEeCCCceEEEEEcEEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKV-KSRKKDDVVEEETFDAVVV  160 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v-~~~~~~~~~~~~~~d~VVv  160 (446)
                      .++             ......++.+++.++++++++.  +++++ |.+++. . +.|+| .+.++.    ++.||+||+
T Consensus        63 ~~~-------------~~~~~~~~~~~l~~~~~~~~v~--~~~~~-v~~i~~-~-~~~~v~~~~~g~----~~~~d~lvi  120 (335)
T 2a87_A           63 GFR-------------NGITGPELMDEMREQALRFGAD--LRMED-VESVSL-H-GPLKSVVTADGQ----THRARAVIL  120 (335)
T ss_dssp             TCT-------------TCBCHHHHHHHHHHHHHHTTCE--EECCC-EEEEEC-S-SSSEEEEETTSC----EEEEEEEEE
T ss_pred             CCC-------------CCCCHHHHHHHHHHHHHHcCCE--EEEee-EEEEEe-C-CcEEEEEeCCCC----EEEeCEEEE
Confidence            111             1134578999999999999887  88876 888887 3 67888 554432    789999999


Q ss_pred             ccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc---ccc-c
Q 013303          161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD---ETH-E  236 (446)
Q Consensus       161 AtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~---~~~-~  236 (446)
                      |||  +.|..|++||.+.|.+..+|+..+.....+.+++|+|||+|.+|+|+|..|++.+.+|+++.|++..   +.+ .
T Consensus       121 AtG--~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~~~~~~~  198 (335)
T 2a87_A          121 AMG--AAARYLQVPGEQELLGRGVSSCATCDGFFFRDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRASKIMLD  198 (335)
T ss_dssp             CCC--EEECCCCCTHHHHTBTTTEESCHHHHGGGGTTCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSSCTTHHH
T ss_pred             CCC--CCccCCCCCchHhccCCceEEeeccchhhcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCccHHHHH
Confidence            999  7888999999876666666765443333457899999999999999999999999999999987651   111 1


Q ss_pred             cCCCCC--CeeeccceeEEccCCc---EEec---CC--cEEeecEEEEecCccCCCCCCCCCCeeeeCCCCccccccccc
Q 013303          237 KQPGYD--NMWLHSMVERANEDGT---VVFR---NG--RVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVF  306 (446)
Q Consensus       237 ~~~~~~--~v~~~~~v~~i~~~~~---v~~~---dG--~~~~~D~vi~atG~~~~~~~l~~~g~i~~~~~~~~~l~~~~~  306 (446)
                      ++.+..  ++..+..|.++..++.   |.+.   +|  +++++|.||+|+|++|+.++++. + +..|+........+.+
T Consensus       199 ~~~~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~-l~~~~~G~i~vd~~~~  276 (335)
T 2a87_A          199 RARNNDKIRFLTNHTVVAVDGDTTVTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLVRE-A-IDVDPDGYVLVQGRTT  276 (335)
T ss_dssp             HHHHCTTEEEECSEEEEEEECSSSCCEEEEEEETTSCCEEECCSCEEECSCEEECCTTTBT-T-BCBCTTSCBCCSTTSS
T ss_pred             HHhccCCcEEEeCceeEEEecCCcEeEEEEEEcCCCceEEeecCEEEEccCCccChhHhhc-c-cccCCCccEEeCCCCC
Confidence            221222  4555678888876553   7775   45  46889999999999999988752 2 3333222212222222


Q ss_pred             CCCCCCCeEEecCCCcc--CchhHHHHHHHHHHHHHc
Q 013303          307 PPVLAPGLSFVGIPQKV--IPFPFFELQSKWIASVLS  341 (446)
Q Consensus       307 ~~~~~p~l~~iG~~~~~--~~~~~~~~qa~~~a~~l~  341 (446)
                      . ++.|+||++|++...  .....+..||+.+|.++.
T Consensus       277 ~-t~~~~iya~GD~~~~~~~~~~~A~~~g~~aA~~i~  312 (335)
T 2a87_A          277 S-TSLPGVFAAGDLVDRTYRQAVTAAGSGCAAAIDAE  312 (335)
T ss_dssp             B-CSSTTEEECGGGTCCSCCCHHHHHHHHHHHHHHHH
T ss_pred             c-cCCCCEEEeeecCCccHHHHHHHHHhHHHHHHHHH
Confidence            2 458999999988654  345667889998888774

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=100.00  E-value=3.5e-33  Score=266.76  Aligned_cols=274  Identities=19%  Similarity=0.199  Sum_probs=189.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .+||+||||||||++||..|++.|++|+|||+ ..+||+|.+.        +|.+                      .++
T Consensus         6 ~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~-~~~gG~~~~~--------~~i~----------------------~~p   54 (312)
T 4gcm_A            6 DFDIAIIGAGPAGMTAAVYASRANLKTVMIER-GIPGGQMANT--------EEVE----------------------NFP   54 (312)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTGGGGGC--------SCBC----------------------CST
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEec-CCCCCeeecc--------cccC----------------------CcC
Confidence            47999999999999999999999999999998 4689988754        1111                      011


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                      .+              ......++.........+.+..  +..+..+......  . ..+...++    .++.||+||||
T Consensus        55 ~~--------------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~-~~~~~~~~----~~~~~d~liiA  111 (312)
T 4gcm_A           55 GF--------------EMITGPDLSTKMFEHAKKFGAV--YQYGDIKSVEDKG--E-YKVINFGN----KELTAKAVIIA  111 (312)
T ss_dssp             TC--------------SSBCHHHHHHHHHHHHHHTTCE--EEECCCCEEEECS--S-CEEEECSS----CEEEEEEEEEC
T ss_pred             Cc--------------cccchHHHHHHHHHHHhhcccc--ccceeeeeeeeee--c-ceeeccCC----eEEEeceeEEc
Confidence            11              1234467777777777776654  5555554444332  2 23333232    37999999999


Q ss_pred             cCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc--c--cccc
Q 013303          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD--E--THEK  237 (446)
Q Consensus       162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~--~--~~~~  237 (446)
                      ||  +.|+.|++||.+.+.+..+++....+...+++|+|+|||+|++|+|+|..|++.|.+|++++|.+..  .  ...+
T Consensus       112 tG--s~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~  189 (312)
T 4gcm_A          112 TG--AEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDR  189 (312)
T ss_dssp             CC--EEECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCSCHHHHHH
T ss_pred             cc--CccCcCCCCChhhhCCccEEeeeccCccccCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEecccccCcchhHHHH
Confidence            99  8999999999988877777776666666678999999999999999999999999999999998751  0  0000


Q ss_pred             CCCCCCeee--ccceeEEcc-CCc------EEec--CCcEEeecEEEEecCccCCCCCCC------CCCeeeeCCCCccc
Q 013303          238 QPGYDNMWL--HSMVERANE-DGT------VVFR--NGRVVSADVIMHCTGYKYNYPFLE------TNGIVTVDDNRVGP  300 (446)
Q Consensus       238 ~~~~~~v~~--~~~v~~i~~-~~~------v~~~--dG~~~~~D~vi~atG~~~~~~~l~------~~g~i~~~~~~~~~  300 (446)
                      ......+..  ...+..... +..      ....  ++..+++|.|++++|..|+..++.      +.|.|.+|++++  
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~g~~~~~~~~~~~g~~~~~G~I~vd~~~~--  267 (312)
T 4gcm_A          190 AFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMT--  267 (312)
T ss_dssp             HHHCTTEEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGGGGTCBCTTSCBCCCTTSB--
T ss_pred             HHHhcCcceeeecceeeeeccccccccceeeeecCCceeEEeeeeEEeecCCCcCchhHHhcceecCCCeEeeCCCCc--
Confidence            001111111  111111111 100      1112  234688999999999999987653      456677777766  


Q ss_pred             ccccccCCCCCCCeEEecCCCcc--CchhHHHHHHHHHHHHHc
Q 013303          301 LYKHVFPPVLAPGLSFVGIPQKV--IPFPFFELQSKWIASVLS  341 (446)
Q Consensus       301 l~~~~~~~~~~p~l~~iG~~~~~--~~~~~~~~qa~~~a~~l~  341 (446)
                              |+.|+||++|++...  .....+..|++.+|.++.
T Consensus       268 --------Ts~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~i~  302 (312)
T 4gcm_A          268 --------TSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAA  302 (312)
T ss_dssp             --------CSSTTEEECSTTBSCSCCSHHHHHHHHHHHHHHHH
T ss_pred             --------cCCCCEEEEeecCCCcchHHHHHHHHHHHHHHHHH
Confidence                    679999999998642  345678889999998764

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=100.00  E-value=3.5e-33  Score=267.56  Aligned_cols=280  Identities=17%  Similarity=0.206  Sum_probs=203.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      ++||+|||||++|+++|..|++.|++|+|||+ ..+||.|.+....                              ..++
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~~~~~~~------------------------------~~~~   53 (320)
T 1trb_A            5 HSKLLILGSGPAGYTAAVYAARANLQPVLITG-MEKGGQLTTTTEV------------------------------ENWP   53 (320)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEECC-SSTTGGGGGCSBC------------------------------CCST
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEcc-CCCCceEecchhh------------------------------hhCC
Confidence            46999999999999999999999999999997 4788888653100                              0011


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                      .+             +....+.++.+++.++++++++.  +++++ |..++... +.|+| +.++.    ++.||+||+|
T Consensus        54 ~~-------------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-v~~i~~~~-~~~~v-~~~~~----~~~~~~lv~A  111 (320)
T 1trb_A           54 GD-------------PNDLTGPLLMERMHEHATKFETE--IIFDH-INKVDLQN-RPFRL-NGDNG----EYTCDALIIA  111 (320)
T ss_dssp             TC-------------CSSCBHHHHHHHHHHHHHHTTCE--EECCC-EEEEECSS-SSEEE-EESSC----EEEEEEEEEC
T ss_pred             CC-------------CCCCCHHHHHHHHHHHHHHCCCE--EEEee-eeEEEecC-CEEEE-EeCCC----EEEcCEEEEC
Confidence            11             11234578899999999999987  77775 88988765 67888 44443    7899999999


Q ss_pred             cCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc---ccc---
Q 013303          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD---ETH---  235 (446)
Q Consensus       162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~---~~~---  235 (446)
                      ||  +.|..|.+||.+.+.+..+|+..+.+...+.+++|+|||+|.+|+|+|..|++.+.+|+++.+++..   ..+   
T Consensus       112 tG--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~  189 (320)
T 1trb_A          112 TG--ASARYLGLPSEEAFKGRGVSACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKR  189 (320)
T ss_dssp             CC--EEECCCCCHHHHHTBTTTEESCHHHHGGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCCCHHHHHH
T ss_pred             CC--CCcCCCCCCChHHhCCceeEecccCCccccCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCccccCHHHHHH
Confidence            99  6788899998776655566665444433467899999999999999999999999999999987641   111   


Q ss_pred             --ccCCCCC-CeeeccceeEEccCC-c---EEecC----C--cEEeecEEEEecCccCCCCCCCC-----CCeeeeCCCC
Q 013303          236 --EKQPGYD-NMWLHSMVERANEDG-T---VVFRN----G--RVVSADVIMHCTGYKYNYPFLET-----NGIVTVDDNR  297 (446)
Q Consensus       236 --~~~~~~~-~v~~~~~v~~i~~~~-~---v~~~d----G--~~~~~D~vi~atG~~~~~~~l~~-----~g~i~~~~~~  297 (446)
                        +.+.+.+ ++.....|.++..++ .   |.+.+    |  +++++|.||+|+|++|+.++++.     .|.+.+|+..
T Consensus       190 l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~~~~~l~~~~G~i~vd~~~  269 (320)
T 1trb_A          190 LMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGI  269 (320)
T ss_dssp             HHHHHHTSSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSCEEESCGGGTTTSCEETTEECCCCSS
T ss_pred             HHHhcccCCeEEEcCceeEEEEcCCCceEEEEEEeccCCCceEEEEcCEEEEEeCCCCChHHhcccccccCceEEECCCc
Confidence              1111222 455667888887654 2   77765    5  46899999999999999888752     3344444442


Q ss_pred             cccccccccCCCCCCCeEEecCCCcc--CchhHHHHHHHHHHHHHc
Q 013303          298 VGPLYKHVFPPVLAPGLSFVGIPQKV--IPFPFFELQSKWIASVLS  341 (446)
Q Consensus       298 ~~~l~~~~~~~~~~p~l~~iG~~~~~--~~~~~~~~qa~~~a~~l~  341 (446)
                      +..    ... ++.|+||++|++...  .....+..||+.+|.++.
T Consensus       270 ~~~----~~~-t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~  310 (320)
T 1trb_A          270 HGN----ATQ-TSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAE  310 (320)
T ss_dssp             SSC----TTB-CSSTTEEECGGGGCSSSCCHHHHHHHHHHHHHHHH
T ss_pred             ccc----ccc-CCCCCEEEcccccCCcchhhhhhhccHHHHHHHHH
Confidence            100    012 458999999988654  345667788888887764

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=100.00  E-value=6.7e-33  Score=267.13  Aligned_cols=282  Identities=17%  Similarity=0.190  Sum_probs=202.4

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEee----CCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCc
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEK----GEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM   78 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~----~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~   78 (446)
                      +||+|||||++|+++|..|++.|++|+|||+    ...+||.|.....                  .            .
T Consensus         9 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~------------------~------------~   58 (333)
T 1vdc_A            9 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTD------------------V------------E   58 (333)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSE------------------E------------C
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeeccc------------------c------------c
Confidence            6899999999999999999999999999998    5567776654210                  0            0


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEE
Q 013303           79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV  158 (446)
Q Consensus        79 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~V  158 (446)
                      .++.+|             ......++.+++.++++++++.  +++++ |..++... +.|+|++ ++    .++.||+|
T Consensus        59 ~~~~~~-------------~~~~~~~~~~~l~~~~~~~gv~--~~~~~-v~~i~~~~-~~~~v~~-~~----~~~~~~~v  116 (333)
T 1vdc_A           59 NFPGFP-------------EGILGVELTDKFRKQSERFGTT--IFTET-VTKVDFSS-KPFKLFT-DS----KAILADAV  116 (333)
T ss_dssp             CSTTCT-------------TCEEHHHHHHHHHHHHHHTTCE--EECCC-CCEEECSS-SSEEEEC-SS----EEEEEEEE
T ss_pred             cCCCCc-------------cCCCHHHHHHHHHHHHHHCCCE--EEEeE-EEEEEEcC-CEEEEEE-CC----cEEEcCEE
Confidence            011111             1124578899999999999887  78776 88998765 6788877 32    37899999


Q ss_pred             EEccCCCCCCccCCCCCCCC----CCccEEEeeecCCCCC--CCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc
Q 013303          159 VVCNGHFSVPRLAQVPGIDS----WPGKQMHSHNYRIPNP--FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD  232 (446)
Q Consensus       159 VvAtG~~s~p~~p~i~G~~~----~~g~~~hs~~~~~~~~--~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~  232 (446)
                      |+|||  +.|..|++||.+.    |.+..+|+..+.....  +.+++|+|||+|.+|+|+|..|++.+.+|+++.+++..
T Consensus       117 v~A~G--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~  194 (333)
T 1vdc_A          117 ILAIG--AVAKRLSFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAF  194 (333)
T ss_dssp             EECCC--EEECCCCCBTCSSSSSCCBTTTEESCHHHHTTSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             EECCC--CCcCCCCCCCccccccccccCcEEEeccCccchhhcCCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcC
Confidence            99999  6788899999876    5556666654433333  57899999999999999999999999999999998751


Q ss_pred             ---ccc-ccCCCCC--CeeeccceeEEccCC---c---EEec---CC--cEEeecEEEEecCccCCCCCCCCCCeeeeCC
Q 013303          233 ---ETH-EKQPGYD--NMWLHSMVERANEDG---T---VVFR---NG--RVVSADVIMHCTGYKYNYPFLETNGIVTVDD  295 (446)
Q Consensus       233 ---~~~-~~~~~~~--~v~~~~~v~~i~~~~---~---v~~~---dG--~~~~~D~vi~atG~~~~~~~l~~~g~i~~~~  295 (446)
                         ..+ .++.+..  ++..+..|.++..++   .   |.+.   +|  +++++|.||+|+|++|+.++++. + +..++
T Consensus       195 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~-l~~~~  272 (333)
T 1vdc_A          195 RASKIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLDG-G-VELDS  272 (333)
T ss_dssp             CSCHHHHHHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTT-S-SCBCT
T ss_pred             CccHHHHHHHHhCCCeeEecCCceEEEeCCCCccceeeEEEEecCCCceEEEecCEEEEEeCCccchHHhhc-c-ccccC
Confidence               111 1222222  455567888887654   2   7776   46  46889999999999999988752 2 33332


Q ss_pred             CCcccccccccCCCCCCCeEEecCCCcc--CchhHHHHHHHHHHHHHc
Q 013303          296 NRVGPLYKHVFPPVLAPGLSFVGIPQKV--IPFPFFELQSKWIASVLS  341 (446)
Q Consensus       296 ~~~~~l~~~~~~~~~~p~l~~iG~~~~~--~~~~~~~~qa~~~a~~l~  341 (446)
                      +.......+.+. ++.|+||++|++...  .....+..||+.+|.++.
T Consensus       273 ~G~i~vd~~~~~-t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~  319 (333)
T 1vdc_A          273 DGYVVTKPGTTQ-TSVPGVFAAGDVQDKKYRQAITAAGTGCMAALDAE  319 (333)
T ss_dssp             TSCBCCCTTSCB-CSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEechhhcc-cCCCCEEEeeeccCCCchhHHHHHHhHHHHHHHHH
Confidence            222112222222 458999999998654  345667788888777654

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=100.00  E-value=4.2e-33  Score=266.28  Aligned_cols=279  Identities=17%  Similarity=0.193  Sum_probs=189.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      ++||+||||||||++||..|++.|++|+|||+. ..||.+..         ||.|.+..         ..|       ++
T Consensus         4 ~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~-~~gg~~~~---------G~~~~~~~---------i~~-------~~   57 (314)
T 4a5l_A            4 IHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGF-MAGGVAAG---------GQLTTTTI---------IEN-------FP   57 (314)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCCEEECCS-SGGGCCTT---------CGGGGSSE---------ECC-------ST
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCCcccC---------CCcCChHH---------hhh-------cc
Confidence            479999999999999999999999999999985 46665543         33322111         111       11


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                      .+             +...+..++.+++.+.+++++..  +. ...|..+.... ..+.+.+.++    .++.||+||+|
T Consensus        58 g~-------------~~~i~~~~l~~~~~~~~~~~~~~--~~-~~~v~~~~~~~-~~~~~~~~~~----~~~~~~~liiA  116 (314)
T 4a5l_A           58 GF-------------PNGIDGNELMMNMRTQSEKYGTT--II-TETIDHVDFST-QPFKLFTEEG----KEVLTKSVIIA  116 (314)
T ss_dssp             TC-------------TTCEEHHHHHHHHHHHHHHTTCE--EE-CCCEEEEECSS-SSEEEEETTC----CEEEEEEEEEC
T ss_pred             CC-------------cccCCHHHHHHHHHHHHhhcCcE--EE-EeEEEEeecCC-CceEEEECCC----eEEEEeEEEEc
Confidence            11             22345678899999999998875  44 44566665544 4455555443    37999999999


Q ss_pred             cCCCCCCccCCCCCCCCCCccEEEeeecCCC--CCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCccc----c
Q 013303          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP--NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADET----H  235 (446)
Q Consensus       162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~--~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~~~----~  235 (446)
                      ||  +.|+.|++||.+.+.+..++...+...  ..+++++|+|||+|.+|+|+|..|++.|++|++++|......    .
T Consensus       117 TG--~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~~~~~~~~  194 (314)
T 4a5l_A          117 TG--ATAKRMHVPGEDKYWQNGVSACAICDGAVPIFRNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAFRASKTMQ  194 (314)
T ss_dssp             CC--EEECCCCCTTHHHHBTTTEESCHHHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHHHH
T ss_pred             cc--ccccccCCCccccccccceeeehhhhhhhhhcCCCeEEEECCChHHHHHHHHHHHhCCeeeeecccccccccchhh
Confidence            99  899999999987665555665554332  236789999999999999999999999999999998765110    0


Q ss_pred             ccC-CC-CCCeeeccceeEEccCC----cEEe-----cCCcEEeecEEEEecCccCCCCCCCC------CCeeeeCCCCc
Q 013303          236 EKQ-PG-YDNMWLHSMVERANEDG----TVVF-----RNGRVVSADVIMHCTGYKYNYPFLET------NGIVTVDDNRV  298 (446)
Q Consensus       236 ~~~-~~-~~~v~~~~~v~~i~~~~----~v~~-----~dG~~~~~D~vi~atG~~~~~~~l~~------~g~i~~~~~~~  298 (446)
                      .+. .. .........+.++....    .+.+     .+++++++|.|++|+|++|+..++..      .|.+ +|++++
T Consensus       195 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~d~vi~a~G~~pn~~~l~~~~~~~~~G~i-v~~~~~  273 (314)
T 4a5l_A          195 ERVLNHPKIEVIWNSELVELEGDGDLLNGAKIHNLVSGEYKVVPVAGLFYAIGHSPNSKFLGGQVKTADDGYI-LTEGPK  273 (314)
T ss_dssp             HHHHTCTTEEEECSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTSSCBCTTSCB-CCBTTB
T ss_pred             hhhhcccceeeEeeeeeEEEEeeeeccceeEEeecccccceeeccccceEecccccChhHhcccceEcCCeeE-eCCCCc
Confidence            000 11 11222233333443221    1333     34567899999999999999988753      2322 344333


Q ss_pred             ccccccccCCCCCCCeEEecCCCccC--chhHHHHHHHHHHHHH
Q 013303          299 GPLYKHVFPPVLAPGLSFVGIPQKVI--PFPFFELQSKWIASVL  340 (446)
Q Consensus       299 ~~l~~~~~~~~~~p~l~~iG~~~~~~--~~~~~~~qa~~~a~~l  340 (446)
                                |+.|+||++|++...+  ....+..|++.+|..+
T Consensus       274 ----------Ts~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~~  307 (314)
T 4a5l_A          274 ----------TSVDGVFACGDVCDRVYRQAIVAAGSGCMAALSC  307 (314)
T ss_dssp             ----------CSSTTEEECSTTTCSSCCCHHHHHHHHHHHHHHH
T ss_pred             ----------cCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHH
Confidence                      6699999999986543  3455667887777544

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=100.00  E-value=3.3e-32  Score=275.87  Aligned_cols=204  Identities=20%  Similarity=0.259  Sum_probs=143.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcE--------------EEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTV--------------VVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYK   67 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v--------------~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~   67 (446)
                      .+||+||||||+||++|..|.+.|...              +.+|+.+.++  |+...        ..|+..+ ..+...
T Consensus        39 i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~--Wh~g~--------~~p~~~~-q~~fl~  107 (501)
T 4b63_A           39 LHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFA--WHSGM--------LVPGSKM-QISFIK  107 (501)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCC--SSGGG--------CCTTCBC-SSCGGG
T ss_pred             cCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCC--cCCCC--------CCCCccc-cccchh
Confidence            369999999999999999998865544              4455544433  33210        0011000 001111


Q ss_pred             ce-eecCCCCCcccCCC--------CCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCC--
Q 013303           68 SL-RVNLPRELMGFQAY--------PFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES--  136 (446)
Q Consensus        68 ~l-~~~~~~~~~~~~d~--------~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~--  136 (446)
                      .| ....|...++|..|        +|..       ....||++.|+.+||+.++++++..  |+|+++|++|++...  
T Consensus       108 Dlvtl~~P~s~~sf~~yl~~~~rl~~f~~-------~~~~~p~r~E~~~Yl~~~A~~~~~~--vrf~~~V~~v~~~~~~~  178 (501)
T 4b63_A          108 DLATLRDPRSSFTFLNYLHQKGRLIHFTN-------LSTFLPARLEFEDYMRWCAQQFSDV--VAYGEEVVEVIPGKSDP  178 (501)
T ss_dssp             SSSTTTCTTCTTSHHHHHHHHTCHHHHHT-------TCCSCCBHHHHHHHHHHHHHTTGGG--EEESEEEEEEEEECSST
T ss_pred             hhccccCCCCccchHHHHHHhCCccCCcc-------ccCCCCCHHHHHHHHHHHHHHcCCc--eEcceEEEeeccccccc
Confidence            11 11122222222211        1211       2567899999999999999998755  999999999998653  


Q ss_pred             -----CceEEEEEeCC-CceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCC------CCCCCCCEEEEEe
Q 013303          137 -----NKWKVKSRKKD-DVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRI------PNPFQDQVVILIG  204 (446)
Q Consensus       137 -----~~~~v~~~~~~-~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~------~~~~~~k~VvVVG  204 (446)
                           +.|+|++.++. ++..++.++.||+|||  ..|.+|.   ...|.|.++|+.+|..      +..++||+|+|||
T Consensus       179 ~~~~~~~~~V~~~~~~~g~~~~~~ar~vVlatG--~~P~iP~---~~~~~g~v~Hss~y~~~~~~~~~~~~~gKrV~VVG  253 (501)
T 4b63_A          179 SSSVVDFFTVRSRNVETGEISARRTRKVVIAIG--GTAKMPS---GLPQDPRIIHSSKYCTTLPALLKDKSKPYNIAVLG  253 (501)
T ss_dssp             TSSCBCEEEEEEEETTTCCEEEEEEEEEEECCC--CEECCCT---TSCCCTTEEEGGGHHHHHHHHSCCTTSCCEEEEEC
T ss_pred             cccccceEEEEEecCCCceEEEEEeCEEEECcC--CCCCCCC---CCCCCcceeeccccccchhhccccccCCcEEEEEC
Confidence                 25999999875 4667899999999999  5666554   4457789999999864      5678999999999


Q ss_pred             cCCcHHHHHHHHhcc--CCEEEEEEecC
Q 013303          205 HYASGLDIKRDLAGF--AKEVHIASRSV  230 (446)
Q Consensus       205 ~G~sg~eia~~l~~~--~~~V~l~~r~~  230 (446)
                      +|.||+|++.+|++.  +.+|+++.|++
T Consensus       254 ~G~SA~ei~~~L~~~~~~~~v~~~~R~~  281 (501)
T 4b63_A          254 SGQSAAEIFHDLQKRYPNSRTTLIMRDS  281 (501)
T ss_dssp             CSHHHHHHHHHHHHHSTTCEEEEECSSS
T ss_pred             CcHHHHHHHHHHHhcCCCceEEEEeCCC
Confidence            999999999999865  78999999986

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=100.00  E-value=4.1e-32  Score=276.67  Aligned_cols=276  Identities=18%  Similarity=0.212  Sum_probs=208.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .+||+||||||||+++|..|++.|++|+|+|+  .+||.|......                              ..+.
T Consensus       212 ~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~--~~GG~~~~~~~~------------------------------~~~~  259 (521)
T 1hyu_A          212 AYDVLIVGSGPAGAAAAVYSARKGIRTGLMGE--RFGGQVLDTVDI------------------------------ENYI  259 (521)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECS--STTGGGTTCSCB------------------------------CCBT
T ss_pred             cccEEEECCcHHHHHHHHHHHhCCCeEEEEEC--CCCCcccccccc------------------------------cccC
Confidence            46899999999999999999999999999986  579988753100                              0010


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCC--CceEEEEEeCCCceEEEEEcEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES--NKWKVKSRKKDDVVEEETFDAVV  159 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~--~~~~v~~~~~~~~~~~~~~d~VV  159 (446)
                      .+              .+....++.+++.++++++++.  ++++++|..+++..+  +.|+|++.++.    ++.||+||
T Consensus       260 ~~--------------~~~~~~~l~~~l~~~~~~~gv~--v~~~~~v~~i~~~~~~~~~~~V~~~~g~----~~~~d~vV  319 (521)
T 1hyu_A          260 SV--------------PKTEGQKLAGALKAHVSDYDVD--VIDSQSASKLVPAATEGGLHQIETASGA----VLKARSII  319 (521)
T ss_dssp             TB--------------SSBCHHHHHHHHHHHHHTSCEE--EECSCCEEEEECCSSTTSCEEEEETTSC----EEEEEEEE
T ss_pred             CC--------------CCCCHHHHHHHHHHHHHHcCCE--EEcCCEEEEEEeccCCCceEEEEECCCC----EEEcCEEE
Confidence            11              1235678999999999999987  899999999986431  46888876553    78999999


Q ss_pred             EccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC---cc-cc
Q 013303          160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA---DE-TH  235 (446)
Q Consensus       160 vAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~---~~-~~  235 (446)
                      +|||  +.|+.|.+||.+.|.+..++.....+...+.+++|+|||+|.+|+|+|..|++.+.+|+++.+.+.   +. ..
T Consensus       320 lAtG--~~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~~~~l~  397 (521)
T 1hyu_A          320 IATG--AKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQ  397 (521)
T ss_dssp             ECCC--EEECCCCCTTTTTTTTTTEECCTTCCGGGGBTSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCSCHHHH
T ss_pred             ECCC--CCcCCCCCCChhhhcCceEEEeecCchhhcCCCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCcCHHHH
Confidence            9999  678889999998887766676555444456899999999999999999999999999999998775   11 11


Q ss_pred             ccCCCCC--CeeeccceeEEccCC----cEEecC---Cc--EEeecEEEEecCccCCCCCCCC------CCeeeeCCCCc
Q 013303          236 EKQPGYD--NMWLHSMVERANEDG----TVVFRN---GR--VVSADVIMHCTGYKYNYPFLET------NGIVTVDDNRV  298 (446)
Q Consensus       236 ~~~~~~~--~v~~~~~v~~i~~~~----~v~~~d---G~--~~~~D~vi~atG~~~~~~~l~~------~g~i~~~~~~~  298 (446)
                      .++.+..  ++..+..+.++..++    .+.+.|   |+  ++++|.||+|+|+.|+.+++..      .|.|.+|+..+
T Consensus       398 ~~l~~~~gV~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~l~~~~~G~I~Vd~~~~  477 (521)
T 1hyu_A          398 DKVRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGALERNRMGEIIIDAKCE  477 (521)
T ss_dssp             HHHTTCTTEEEECSEEEEEEEECSSSEEEEEEEETTTCCEEEEECSEEEECCCEEESCGGGTTTSCBCTTSCBCCCTTCB
T ss_pred             HHHhcCCCcEEEeCCEEEEEEcCCCcEEEEEEEeCCCCceEEEEcCEEEECcCCCCCchHHhhhhccCCCCcEEeCCCCC
Confidence            2233322  455667888887642    256654   54  5789999999999999888753      34555555444


Q ss_pred             ccccccccCCCCCCCeEEecCCCccC--chhHHHHHHHHHHHHHc
Q 013303          299 GPLYKHVFPPVLAPGLSFVGIPQKVI--PFPFFELQSKWIASVLS  341 (446)
Q Consensus       299 ~~l~~~~~~~~~~p~l~~iG~~~~~~--~~~~~~~qa~~~a~~l~  341 (446)
                                ++.|+||++|++....  ....+..||..+|.++.
T Consensus       478 ----------ts~p~VfA~GD~~~~~~~~~~~A~~~g~~aa~~i~  512 (521)
T 1hyu_A          478 ----------TSVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAF  512 (521)
T ss_dssp             ----------CSSTTEEECSTTBCCSSCCHHHHHHHHHHHHHHHH
T ss_pred             ----------CCCCCEEEeecccCCCcceeeehHHhHHHHHHHHH
Confidence                      4589999999987543  45677888888887764

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=100.00  E-value=3.4e-32  Score=273.09  Aligned_cols=276  Identities=15%  Similarity=0.112  Sum_probs=191.0

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCc
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM   78 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~   78 (446)
                      |++||+|||||+||+++|..|++.  |.+|+|||+++.+|......                   ..|.      ..   
T Consensus         1 M~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~-------------------~~~~------~~---   52 (452)
T 3oc4_A            1 MSLKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGL-------------------SAYF------NH---   52 (452)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC------------------------------------
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccc-------------------hhhh------cC---
Confidence            568999999999999999999998  89999999988765211000                   0000      00   


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEE
Q 013303           79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV  158 (446)
Q Consensus        79 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~V  158 (446)
                                         .+....++..+..+..+++++.  ++++++|+++++.. ..+.+.  . .....++.||+|
T Consensus        53 -------------------~~~~~~~~~~~~~~~~~~~gi~--~~~~~~V~~id~~~-~~v~v~--~-~~~~~~~~~d~l  107 (452)
T 3oc4_A           53 -------------------TINELHEARYITEEELRRQKIQ--LLLNREVVAMDVEN-QLIAWT--R-KEEQQWYSYDKL  107 (452)
T ss_dssp             ---------------------------CCCCHHHHHHTTEE--EECSCEEEEEETTT-TEEEEE--E-TTEEEEEECSEE
T ss_pred             -------------------CCCCHHHhhcCCHHHHHHCCCE--EEECCEEEEEECCC-CEEEEE--e-cCceEEEEcCEE
Confidence                               0000011111123344566776  78899999998765 555554  1 123457999999


Q ss_pred             EEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCC-----CCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc-
Q 013303          159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNP-----FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD-  232 (446)
Q Consensus       159 VvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~-----~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~-  232 (446)
                      |+|||  +.|..|++||.+.  ..++++..+.+...     ..+++|+|||+|.+|+|+|..+++.|.+|+++.+.+.. 
T Consensus       108 viAtG--~~p~~p~i~g~~~--~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  183 (452)
T 3oc4_A          108 ILATG--ASQFSTQIRGSQT--EKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLL  183 (452)
T ss_dssp             EECCC--CCBCCCCCBTTTC--TTEEEGGGCC----CCHHHHTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS
T ss_pred             EECCC--cccCCCCCCCCCC--CCEEEeCCHHHHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccc
Confidence            99999  8999999999864  34566655544432     25799999999999999999999999999999987641 


Q ss_pred             -----c----cc-ccCCCCC-CeeeccceeEEcc-CCc--EEecCCcEEeecEEEEecCccCCCCCCCC------CCeee
Q 013303          233 -----E----TH-EKQPGYD-NMWLHSMVERANE-DGT--VVFRNGRVVSADVIMHCTGYKYNYPFLET------NGIVT  292 (446)
Q Consensus       233 -----~----~~-~~~~~~~-~v~~~~~v~~i~~-~~~--v~~~dG~~~~~D~vi~atG~~~~~~~l~~------~g~i~  292 (446)
                           .    .+ +.+.+.+ ++..+..|+++.. ++.  |.+++| ++++|.||+|||++|+.++++.      .|.|.
T Consensus       184 ~~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g-~i~aD~Vv~A~G~~p~~~~l~~~~~~~~~g~i~  262 (452)
T 3oc4_A          184 PKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQ-EISCDSGIFALNLHPQLAYLDKKIQRNLDQTIA  262 (452)
T ss_dssp             TTTCCHHHHHHHHHHHHTTTEEEEETCCEEEEEECSSCEEEEESSC-EEEESEEEECSCCBCCCSSCCTTSCBCTTSCBC
T ss_pred             cccCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEccCCeEEEEECCC-EEEeCEEEECcCCCCChHHHHhhhccCCCCCEE
Confidence                 0    11 1112222 5666788999873 333  556666 8999999999999999988753      34455


Q ss_pred             eCCCCcccccccccCCCCCCCeEEecCCCcc-----------CchhHHHHHHHHHHHHHcCCC
Q 013303          293 VDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-----------IPFPFFELQSKWIASVLSGRI  344 (446)
Q Consensus       293 ~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-----------~~~~~~~~qa~~~a~~l~g~~  344 (446)
                      +|++++          ++.|+||++|++...           ...+.+..||+.+|+++.|..
T Consensus       263 vd~~~~----------t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~  315 (452)
T 3oc4_A          263 VDAYLQ----------TSVPNVFAIGDCISVMNEPVAETFYAPLVNNAVRTGLVVANNLEEKT  315 (452)
T ss_dssp             CCTTCB----------CSSTTEEECGGGBCEEEGGGTEEECCCCHHHHHHHHHHHTTSSSSCC
T ss_pred             ECcCcc----------CCCCCEEEEEeeEEeccccCCceeecchHHHHHHHHHHHHHHhcCCC
Confidence            555544          458999999988643           256778999999999999863

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=100.00  E-value=4.8e-33  Score=282.23  Aligned_cols=298  Identities=20%  Similarity=0.219  Sum_probs=196.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCC-ccCceeecCCCCCccc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF   80 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~-~y~~l~~~~~~~~~~~   80 (446)
                      ++||+||||||||++||..|++.|++|+|||+.+.+||+|.+.        ||.|++.++... .+..+......     
T Consensus        25 ~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~~--------gciP~k~l~~~~~~~~~~~~~~~~-----   91 (491)
T 3urh_A           25 AYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLNV--------GCIPSKALLHASEMFHQAQHGLEA-----   91 (491)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHH--------SHHHHHHHHHHHHHHHHHHHSSGG-----
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccc--------cchhhHHHHHHHHHHHHHHhhHhh-----
Confidence            4799999999999999999999999999999999999999875        666655433222 11111111111     


Q ss_pred             CCCCCCcCCCCCCCCCCCCCCHHHHHH-----------HHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCc
Q 013303           81 QAYPFVARNYEGSVDLRRYPGHEEVLR-----------YLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV  149 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~-----------yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~  149 (446)
                        +.+...        ........+..           .+....++.++.  +..+. +..+     +.+.+.+...++.
T Consensus        92 --~g~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g~-~~~~-----~~~~~~v~~~~g~  153 (491)
T 3urh_A           92 --LGVEVA--------NPKLNLQKMMAHKDATVKSNVDGVSFLFKKNKID--GFQGT-GKVL-----GQGKVSVTNEKGE  153 (491)
T ss_dssp             --GTEECC--------CCEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEESE-EEEC-----SSSEEEEECTTSC
T ss_pred             --cCcccC--------CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEE-EEEe-----cCCEEEEEeCCCc
Confidence              111000        00011222222           233344455654  44333 2222     2234444443444


Q ss_pred             eEEEEEcEEEEccCCCCCCccCCCCCCCC-CCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEe
Q 013303          150 VEEETFDAVVVCNGHFSVPRLAQVPGIDS-WPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR  228 (446)
Q Consensus       150 ~~~~~~d~VVvAtG~~s~p~~p~i~G~~~-~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r  228 (446)
                      ..++.||+||+|||  +.|  |.+||++. +.+..+++..........+++|+|||+|.+|+|+|..|++.|.+|+++.+
T Consensus       154 ~~~~~~d~lViATG--s~p--~~ipg~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~  229 (491)
T 3urh_A          154 EQVLEAKNVVIATG--SDV--AGIPGVEVAFDEKTIVSSTGALALEKVPASMIVVGGGVIGLELGSVWARLGAKVTVVEF  229 (491)
T ss_dssp             EEEEECSEEEECCC--EEC--CCBTTBCCCCCSSSEECHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECS
T ss_pred             eEEEEeCEEEEccC--CCC--CCCCCcccccCCeeEEehhHhhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCEEEEEec
Confidence            56899999999999  555  45777753 34444555444333445689999999999999999999999999999998


Q ss_pred             cCC-----cc----cc-ccCCCC-CCeeeccceeEEccCCc---EEecC---C--cEEeecEEEEecCccCCCCCC----
Q 013303          229 SVA-----DE----TH-EKQPGY-DNMWLHSMVERANEDGT---VVFRN---G--RVVSADVIMHCTGYKYNYPFL----  285 (446)
Q Consensus       229 ~~~-----~~----~~-~~~~~~-~~v~~~~~v~~i~~~~~---v~~~d---G--~~~~~D~vi~atG~~~~~~~l----  285 (446)
                      .+.     +.    .+ +.+.+. .++.....|.++..++.   +.+.+   |  +++++|.||+|||++|+.++|    
T Consensus       230 ~~~~l~~~d~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~  309 (491)
T 3urh_A          230 LDTILGGMDGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAK  309 (491)
T ss_dssp             SSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCEECCTTSCHHH
T ss_pred             cccccccCCHHHHHHHHHHHHhCCCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccCCCccCchh
Confidence            764     10    11 111112 24556667888865432   55653   5  578999999999999999875    


Q ss_pred             -----CCCCeeeeCCCCcccccccccCCCCCCCeEEecCCC-ccCchhHHHHHHHHHHHHHcCCC
Q 013303          286 -----ETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQ-KVIPFPFFELQSKWIASVLSGRI  344 (446)
Q Consensus       286 -----~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~-~~~~~~~~~~qa~~~a~~l~g~~  344 (446)
                           ++.|.|.+|+..+          ++.|+||++|++. .....+.+..||+.+|+++.|..
T Consensus       310 ~g~~~~~~G~i~vd~~~~----------t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~  364 (491)
T 3urh_A          310 AGVVLDSRGRVEIDRHFQ----------TSIAGVYAIGDVVRGPMLAHKAEDEGVAVAEIIAGQA  364 (491)
T ss_dssp             HTCCBCTTSCBCCCTTCB----------CSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTTSC
T ss_pred             cCceECCCCCEeECCCCC----------CCCCCEEEEEecCCCccchhHHHHHHHHHHHHHcCCC
Confidence                 3456677776655          5589999999987 34456788999999999999863

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=100.00  E-value=2.9e-32  Score=259.48  Aligned_cols=274  Identities=15%  Similarity=0.196  Sum_probs=193.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .+||+|||||||||+||..|++.|++|+|||+. .+||.+...                     |              +
T Consensus         6 ~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~-~~gg~~~~~---------------------~--------------~   49 (304)
T 4fk1_A            6 YIDCAVIGAGPAGLNASLVLGRARKQIALFDNN-TNRNRVTQN---------------------S--------------H   49 (304)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECS-CCGGGGSSC---------------------B--------------C
T ss_pred             CcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCCeeeee---------------------c--------------C
Confidence            369999999999999999999999999999986 466654321                     0              0


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                      .|+.           ..-.+..++.+...+.+.+++..  ..++..+..+....++.++|.+.++.    ++.||+||||
T Consensus        50 ~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~g~----~~~a~~liiA  112 (304)
T 4fk1_A           50 GFIT-----------RDGIKPEEFKEIGLNEVMKYPSV--HYYEKTVVMITKQSTGLFEIVTKDHT----KYLAERVLLA  112 (304)
T ss_dssp             CSTT-----------CTTBCHHHHHHHHHHHHTTSTTE--EEEECCEEEEEECTTSCEEEEETTCC----EEEEEEEEEC
T ss_pred             CccC-----------CCCCCHHHHHHHHHHHHHhcCCE--EEEeeEEEEeeecCCCcEEEEECCCC----EEEeCEEEEc
Confidence            1111           11123466777666666666543  44556677777665567888776654    7999999999


Q ss_pred             cCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCc-HHHHHHHHhccCCEEEEEEecCC--ccccccC
Q 013303          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYAS-GLDIKRDLAGFAKEVHIASRSVA--DETHEKQ  238 (446)
Q Consensus       162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~s-g~eia~~l~~~~~~V~l~~r~~~--~~~~~~~  238 (446)
                      ||  +.|+.|++||.+.+.+..++.....+...+++++++|||+|.. +.|+|..+.+.+++|+++.+...  ....+.+
T Consensus       113 TG--s~p~~p~i~G~~~~~~~~v~~~~~~~~~~~~~~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~~~~~~~~~~l  190 (304)
T 4fk1_A          113 TG--MQEEFPSIPNVREYYGKSLFSCPYCDGWELKDQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGNELSQTIMDEL  190 (304)
T ss_dssp             CC--CEEECCSCTTHHHHBTTTEESCHHHHSGGGTTSCEEEECCSHHHHHHHHHHHTTTCSCEEEECSSCCCCHHHHHHH
T ss_pred             cC--CccccccccCccccccceeeeccccchhHhcCCceeeecCCCchhhhHHHHHHhCCceEEEEeccccchhhhhhhh
Confidence            99  8999999999887766666665555555577889999998865 57888888889999999988765  1122223


Q ss_pred             CCCCCeeeccceeEEccCC----cEEecCCcEEeecEEEEecCccCCCCCC-------CCCCeeeeCCCCcccccccccC
Q 013303          239 PGYDNMWLHSMVERANEDG----TVVFRNGRVVSADVIMHCTGYKYNYPFL-------ETNGIVTVDDNRVGPLYKHVFP  307 (446)
Q Consensus       239 ~~~~~v~~~~~v~~i~~~~----~v~~~dG~~~~~D~vi~atG~~~~~~~l-------~~~g~i~~~~~~~~~l~~~~~~  307 (446)
                      .+.+.......++.+..++    .|.+.||+++++|.+|+++|..++.+++       ++.|.|.+|++++         
T Consensus       191 ~~~g~~~~~~~v~~~~~~~~~~~~v~~~~g~~i~~~~~vi~~g~~~~~~~~~~~g~~~~~~G~I~vd~~~~---------  261 (304)
T 4fk1_A          191 SNKNIPVITESIRTLQGEGGYLKKVEFHSGLRIERAGGFIVPTFFRPNQFIEQLGCELQSNGTFVIDDFGR---------  261 (304)
T ss_dssp             HTTTCCEECSCEEEEESGGGCCCEEEETTSCEECCCEEEECCEEECSSCHHHHTTCCCCTTSSSCSSTTCB---------
T ss_pred             hccceeEeeeeEEEeecCCCeeeeeeccccceeeecceeeeeccccCChhhhhcCeEECCCCCEEECcCCc---------
Confidence            2333222334566665433    2889999999999988888888776653       4556677777665         


Q ss_pred             CCCCCCeEEecCCCccC--chhHHHHHHHHHHHHH
Q 013303          308 PVLAPGLSFVGIPQKVI--PFPFFELQSKWIASVL  340 (446)
Q Consensus       308 ~~~~p~l~~iG~~~~~~--~~~~~~~qa~~~a~~l  340 (446)
                       |+.|+||++|++....  ....+..|++.+|..+
T Consensus       262 -Ts~p~IyA~GDv~~~~~~~~~~A~~~G~~AA~~i  295 (304)
T 4fk1_A          262 -TSEKNIYLAGETTTQGPSSLIIAASQGNKAAIAI  295 (304)
T ss_dssp             -CSSTTEEECSHHHHTSCCCHHHHHHHHHHHHHHH
T ss_pred             -cCCCCEEEEeccCCCcchHHHHHHHHHHHHHHHH
Confidence             6799999999876332  2456677888777655

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.98  E-value=3.3e-33  Score=283.73  Aligned_cols=292  Identities=17%  Similarity=0.191  Sum_probs=190.6

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCccc
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~   80 (446)
                      |++||+|||||+||+++|..|++.|++|+|||++ .+||+|.+.        ||.|++.++.+..+.....+..      
T Consensus         1 m~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~c~~~--------gc~P~k~l~~~a~~~~~~~~~~------   65 (500)
T 1onf_A            1 MVYDLIVIGGGSGGMAAARRAARHNAKVALVEKS-RLGGTCVNV--------GCVPKKIMFNAASVHDILENSR------   65 (500)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTHHHHHT--------SHHHHHHHHHHHHHHHHHHHGG------
T ss_pred             CccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC-CcCcccccc--------CCcchHHHHHHHHHHHHHHhhH------
Confidence            6789999999999999999999999999999997 599999874        5555433222111111111100      


Q ss_pred             CCCCCCcCCCCCCCCCCCCCCHHH-----------HHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC---
Q 013303           81 QAYPFVARNYEGSVDLRRYPGHEE-----------VLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK---  146 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~~~-----------v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~---  146 (446)
                       .+.+..         ..-....+           +..++....++.+++  +..++ +..++.     ++|++.+.   
T Consensus        66 -~~g~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g~-~~~id~-----~~v~v~~~~~~  127 (500)
T 1onf_A           66 -HYGFDT---------KFSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVD--LYEGT-ASFLSE-----NRILIKGTKDN  127 (500)
T ss_dssp             -GGTCCC---------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEESC-CCCC------------------
T ss_pred             -hcCCcc---------CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEeE-EEEeeC-----CEEEEEecccc
Confidence             011100         00011222           223344445566776  55554 223321     33333220   


Q ss_pred             ------CCceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccC
Q 013303          147 ------DDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFA  220 (446)
Q Consensus       147 ------~~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~  220 (446)
                            .+...++.||+||+|||  +.|..|++||.+    .++++.++.....  +++|+|||+|.+|+|+|..|++.|
T Consensus       128 ~~~~~~~~~~~~~~~d~lViAtG--s~p~~p~i~G~~----~~~~~~~~~~~~~--~~~vvViGgG~ig~E~A~~l~~~g  199 (500)
T 1onf_A          128 NNKDNGPLNEEILEGRNILIAVG--NKPVFPPVKGIE----NTISSDEFFNIKE--SKKIGIVGSGYIAVELINVIKRLG  199 (500)
T ss_dssp             -------------CBSSEEECCC--CCBCCCSCTTGG----GCEEHHHHTTCCC--CSEEEEECCSHHHHHHHHHHHTTT
T ss_pred             ccccccCCCceEEEeCEEEECCC--CCCCCCCCCCCC----cccCHHHHhccCC--CCeEEEECChHHHHHHHHHHHHcC
Confidence                  01123689999999999  889999999974    2567766655544  899999999999999999999999


Q ss_pred             CEEEEEEecCC-----ccc----c-ccCCCC-CCeeeccceeEEccC--C--cEEecCCcE-EeecEEEEecCccCCCCC
Q 013303          221 KEVHIASRSVA-----DET----H-EKQPGY-DNMWLHSMVERANED--G--TVVFRNGRV-VSADVIMHCTGYKYNYPF  284 (446)
Q Consensus       221 ~~V~l~~r~~~-----~~~----~-~~~~~~-~~v~~~~~v~~i~~~--~--~v~~~dG~~-~~~D~vi~atG~~~~~~~  284 (446)
                      .+|+++.+.+.     +..    + +.+.+. -++..+..|.++..+  +  .|.++||++ +++|.||+|+|++|+.++
T Consensus       200 ~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~~~  279 (500)
T 1onf_A          200 IDSYIFARGNRILRKFDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDTEN  279 (500)
T ss_dssp             CEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCCTTTT
T ss_pred             CeEEEEecCCccCcccchhhHHHHHHHHHhCCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCcCCCC
Confidence            99999999764     111    1 111122 256667789998753  2  377889988 999999999999999875


Q ss_pred             C--CC------CCeeeeCCCCcccccccccCCCCCCCeEEecCCCc----------------------------------
Q 013303          285 L--ET------NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK----------------------------------  322 (446)
Q Consensus       285 l--~~------~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~----------------------------------  322 (446)
                      |  +.      .|.|.+|+.++          ++.|+||++|++..                                  
T Consensus       280 l~~~~~g~~~~~G~i~vd~~~~----------t~~~~iya~GD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  349 (500)
T 1onf_A          280 LKLEKLNVETNNNYIVVDENQR----------TSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFY  349 (500)
T ss_dssp             SSCTTTTCCBSSSCEEECTTCB----------CSSSSEEECSTTEEEC------------------------------CB
T ss_pred             CCchhcCccccCCEEEECCCcc----------cCCCCEEEEeccccccccccccccccccccccccccccccccccccCC
Confidence            4  33      34466666554          55899999998761                                  


Q ss_pred             -cCchhHHHHHHHHHHHHHcCC
Q 013303          323 -VIPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       323 -~~~~~~~~~qa~~~a~~l~g~  343 (446)
                       ....+.+..||+.+|+++.|.
T Consensus       350 ~~~~~~~A~~~g~~aa~~i~g~  371 (500)
T 1onf_A          350 NVQLTPVAINAGRLLADRLFLK  371 (500)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHSC
T ss_pred             cccchhHHHHHHHHHHHHHhCC
Confidence             123567889999999999874

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=99.98  E-value=6.4e-33  Score=281.02  Aligned_cols=292  Identities=20%  Similarity=0.262  Sum_probs=200.5

Q ss_pred             CeEEEECcChHHHHHHHHHHH-CCCcEEEEe--------eCCCcCceeeeCCCCCCCCCCCCCCCCCccCCcc-Cceeec
Q 013303            3 RHVAVIGAGAAGLVVGHELLR-EGHTVVVYE--------KGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLY-KSLRVN   72 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~-~g~~v~v~e--------~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y-~~l~~~   72 (446)
                      +||+|||||++|+++|..|++ .|++|+|||        +...+||+|.+.        ||.|++.+..+..+ ..+.  
T Consensus         8 ~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~~~--------gciP~k~l~~~a~~~~~~~--   77 (495)
T 2wpf_A            8 FDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVNV--------GCVPKKLMVTGAQYMDHLR--   77 (495)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHHHH--------SHHHHHHHHHHHHHHHHHH--
T ss_pred             cCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeeecC--------CcchHHHHHHHHHHHHHHh--
Confidence            699999999999999999999 999999999        356899999875        56665443322211 1110  


Q ss_pred             CCCCCcccCCCCCCcCCCCCCCCCCC--CCCHHHHHHHHHHHH-----------HHh-CCCCcEEeCeEEEEEEEcCCCc
Q 013303           73 LPRELMGFQAYPFVARNYEGSVDLRR--YPGHEEVLRYLQNFA-----------REF-GVDQVVRLHTEVLNARLVESNK  138 (446)
Q Consensus        73 ~~~~~~~~~d~~~~~~~~~~~~~~~~--~~~~~~v~~yl~~~~-----------~~~-~l~~~i~~~~~V~~v~~~~~~~  138 (446)
                            .+..|.+...        ..  .....++.++..++.           ++. +++  +..+ ++..++     .
T Consensus        78 ------~~~~~g~~~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~--~~~g-~~~~i~-----~  135 (495)
T 2wpf_A           78 ------ESAGFGWEFD--------GSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLD--FFLG-WGSLES-----K  135 (495)
T ss_dssp             ------HHHTTTEECC--------GGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEE--EEES-EEEEEE-----T
T ss_pred             ------HHHhcCcccC--------CcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeE--EEEe-EEEEee-----C
Confidence                  0111211100        00  123345555544433           333 554  5544 355543     2


Q ss_pred             eEEEEEeCCC----ceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHH
Q 013303          139 WKVKSRKKDD----VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKR  214 (446)
Q Consensus       139 ~~v~~~~~~~----~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~  214 (446)
                      ++|++.+..+    ...++.||+||||||  +.|+.|++||.+.    ++++.++..... .+++|+|||+|.+|+|+|.
T Consensus       136 ~~v~v~~~~~~~~~~~~~~~~d~lViATG--s~p~~p~i~G~~~----~~~~~~~~~~~~-~~~~vvViGgG~ig~E~A~  208 (495)
T 2wpf_A          136 NVVVVRETADPKSAVKERLQADHILLATG--SWPQMPAIPGIEH----CISSNEAFYLPE-PPRRVLTVGGGFISVEFAG  208 (495)
T ss_dssp             TEEEEESSSSTTSCEEEEEEEEEEEECCC--EEECCCCCTTGGG----CEEHHHHTTCSS-CCSEEEEECSSHHHHHHHH
T ss_pred             CEEEEeecCCccCCCCeEEEcCEEEEeCC--CCcCCCCCCCccc----cccHHHHHhhhh-cCCeEEEECCCHHHHHHHH
Confidence            6677762111    024799999999999  8999999999742    456666554433 4789999999999999999


Q ss_pred             HHhcc---CCEEEEEEecCC-----cc----cc-ccCCCC-CCeeeccceeEEccCC----cEEecCCcEEeecEEEEec
Q 013303          215 DLAGF---AKEVHIASRSVA-----DE----TH-EKQPGY-DNMWLHSMVERANEDG----TVVFRNGRVVSADVIMHCT  276 (446)
Q Consensus       215 ~l~~~---~~~V~l~~r~~~-----~~----~~-~~~~~~-~~v~~~~~v~~i~~~~----~v~~~dG~~~~~D~vi~at  276 (446)
                      .|++.   +.+|+++.+.+.     +.    .+ +.+.+. .++.....|.++..++    .|.+.||+++++|.||+|+
T Consensus       209 ~l~~~~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~  288 (495)
T 2wpf_A          209 IFNAYKPPGGKVTLCYRNNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAI  288 (495)
T ss_dssp             HHHHHCCTTCEEEEEESSSSSCTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred             HHHhhCCCCCeEEEEEcCCccccccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECC
Confidence            99999   999999999764     11    01 111122 2566777899987542    3778899999999999999


Q ss_pred             CccCCCCCC--C-------CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCC
Q 013303          277 GYKYNYPFL--E-------TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       277 G~~~~~~~l--~-------~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~  343 (446)
                      |++|+.++|  +       +.|.|.+|+.++          ++.|+||++|++.. ....+.+..||+.+|.++.|.
T Consensus       289 G~~p~~~~L~l~~~gl~~~~~G~i~Vd~~~~----------t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~  355 (495)
T 2wpf_A          289 GRIPRTNDLQLGNVGVKLTPKGGVQVDEFSR----------TNVPNIYAIGDITDRLMLTPVAINEGAALVDTVFGN  355 (495)
T ss_dssp             CEEECCGGGTGGGTTCCBCTTSSBCCCTTCB----------CSSTTEEECGGGGCSCCCHHHHHHHHHHHHHHHHSS
T ss_pred             CCcccccccchhhcCccCCCCCCEEECCCCc----------cCCCCEEEEeccCCCccCHHHHHHHHHHHHHHhcCC
Confidence            999998854  2       234455555544          45899999999875 345678899999999999874

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=99.97  E-value=2.2e-32  Score=279.17  Aligned_cols=293  Identities=15%  Similarity=0.163  Sum_probs=208.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCC-ccCceeecCCCCCccc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF   80 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~-~y~~l~~~~~~~~~~~   80 (446)
                      ++||+|||||++|+++|..|++.|++|+|||+++.+||+|.+.        ||.|++.++... .+..+. +.       
T Consensus        43 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~--------g~~p~k~l~~~~~~~~~~~-~~-------  106 (523)
T 1mo9_A           43 EYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHN--------ACVPHHLFSDCAAELMLAR-TF-------  106 (523)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHH--------SHHHHHHHHHHHHHHHHHH-HT-------
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCccccc--------CcCchHHHHHHHHHHHHHh-hh-------
Confidence            4799999999999999999999999999999998899999864        444433221111 011110 00       


Q ss_pred             CCCC-CCcCCCCCCCCCCCCCCHHHHHHHHHH-------HH-----HHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCC
Q 013303           81 QAYP-FVARNYEGSVDLRRYPGHEEVLRYLQN-------FA-----REFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD  147 (446)
Q Consensus        81 ~d~~-~~~~~~~~~~~~~~~~~~~~v~~yl~~-------~~-----~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~  147 (446)
                      ..|. ++..       ...+++..++.+++..       +.     ++.+++  +.++.+|..++.     ++|.+. + 
T Consensus       107 ~~~g~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~--~~~~~~v~~i~~-----~~v~~~-g-  170 (523)
T 1mo9_A          107 SGQYWFPDM-------TEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLE--YILNCPAKVIDN-----HTVEAA-G-  170 (523)
T ss_dssp             TTSTTCCCC-------TTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCC--EEESSCCEEEET-----TEEEET-T-
T ss_pred             hhcCcHHHH-------HhhhhhHHHHHHHHHhhhhhhhhhhhhcccccCCcE--EEEeeEEEEeeC-----CEEEEC-C-
Confidence            0111 1111       2334557777777753       33     556776  665778877752     455553 2 


Q ss_pred             CceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecC-CCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEE
Q 013303          148 DVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYR-IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIA  226 (446)
Q Consensus       148 ~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~-~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~  226 (446)
                         .++.||+||+|||  +.|..|++||.+. . .++++.++. ......+++|+|||+|.+|+|+|..+++.|.+|+++
T Consensus       171 ---~~~~~d~lViATG--s~p~~p~i~G~~~-~-~v~~~~~~~~~l~~~~g~~vvViGgG~~g~E~A~~l~~~G~~Vtlv  243 (523)
T 1mo9_A          171 ---KVFKAKNLILAVG--AGPGTLDVPGVNA-K-GVFDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVML  243 (523)
T ss_dssp             ---EEEEBSCEEECCC--EECCCCCSTTTTS-B-TEEEHHHHHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             ---EEEEeCEEEECCC--CCCCCCCCCCccc-C-cEeeHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence               3689999999999  8999999999864 2 256666555 444445699999999999999999999999999999


Q ss_pred             EecCC-----cc----cc-ccCCCC-CCeeeccceeEEcc--CC-----cEEecCCc-EEeecEEEEecCccCCCC-CCC
Q 013303          227 SRSVA-----DE----TH-EKQPGY-DNMWLHSMVERANE--DG-----TVVFRNGR-VVSADVIMHCTGYKYNYP-FLE  286 (446)
Q Consensus       227 ~r~~~-----~~----~~-~~~~~~-~~v~~~~~v~~i~~--~~-----~v~~~dG~-~~~~D~vi~atG~~~~~~-~l~  286 (446)
                      .+.+.     +.    .+ +.+.+. .++..+..|.++..  ++     .|.+.||+ ++++|.||+|||++|+.+ ++.
T Consensus       244 ~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~~~l~  323 (523)
T 1mo9_A          244 VRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAK  323 (523)
T ss_dssp             CSSCTTTTCCSHHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECCHHHHH
T ss_pred             EecCcccccccHHHHHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCCccCHH
Confidence            98764     10    01 111122 25666778888875  33     26677887 899999999999999987 542


Q ss_pred             -------CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCC
Q 013303          287 -------TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       287 -------~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~  343 (446)
                             +.|.|.+|++++          ++.|+||++|++... ...+.+..||+.+|.++.|.
T Consensus       324 ~~gl~~~~~G~i~Vd~~~~----------t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~  378 (523)
T 1mo9_A          324 ILGLDLGPKGEVLVNEYLQ----------TSVPNVYAVGDLIGGPMEMFKARKSGCYAARNVMGE  378 (523)
T ss_dssp             HHTCCBCTTSCBCCCTTSB----------CSSTTEEECGGGGCSSCSHHHHHHHHHHHHHHHTTC
T ss_pred             HcCCccCCCCCEEECCCCc----------cCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence                   456677777655          558999999998753 45678899999999999985

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=99.97  E-value=1.3e-32  Score=276.62  Aligned_cols=287  Identities=20%  Similarity=0.264  Sum_probs=195.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCcc-CceeecCCCCCccc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLY-KSLRVNLPRELMGF   80 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y-~~l~~~~~~~~~~~   80 (446)
                      .+||+|||||++|+++|..|++.|++|+|||++ .+||+|.+.        ||.|++.+..+..+ ..++ +.+      
T Consensus         4 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~--------gciP~k~l~~~a~~~~~~~-~~~------   67 (463)
T 2r9z_A            4 HFDLIAIGGGSGGLAVAEKAAAFGKRVALIESK-ALGGTCVNV--------GCVPKKVMWYASHLAEAVR-DAP------   67 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHH--------SHHHHHHHHHHHHHHHHHH-HGG------
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCC-CCCCcCcCc--------CchhHHHHHHHHHHHHHHh-hhh------
Confidence            479999999999999999999999999999997 799999864        55555433222211 1111 111      


Q ss_pred             CCCCCCcCCCCCCCCCCCCCCHHHHHHHHH-----------HHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCc
Q 013303           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQ-----------NFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV  149 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~-----------~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~  149 (446)
                       .|.+...        .......++.++..           ...++.+++  +..+ ++..++     .++|++ ++   
T Consensus        68 -~~g~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g-~~~~i~-----~~~v~~-~g---  126 (463)
T 2r9z_A           68 -GFGVQAS--------GGTLDWPRLVAGRDRYIGAINSFWDGYVERLGIT--RVDG-HARFVD-----AHTIEV-EG---  126 (463)
T ss_dssp             -GGTBCCC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEES-CEEEEE-----TTEEEE-TT---
T ss_pred             -hcCcccC--------CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHCCCE--EEEe-EEEEcc-----CCEEEE-CC---
Confidence             1111100        01122334443333           333455665  5555 344443     256666 32   


Q ss_pred             eEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303          150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS  229 (446)
Q Consensus       150 ~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~  229 (446)
                       .++.||+||+|||  +.|..|++||.+.    ++++.++..... .+++|+|||+|.+|+|+|..|++.|.+|+++.+.
T Consensus       127 -~~~~~d~lviAtG--s~p~~p~i~G~~~----~~~~~~~~~~~~-~~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~  198 (463)
T 2r9z_A          127 -QRLSADHIVIATG--GRPIVPRLPGAEL----GITSDGFFALQQ-QPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALE  198 (463)
T ss_dssp             -EEEEEEEEEECCC--EEECCCSCTTGGG----SBCHHHHHHCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             -EEEEcCEEEECCC--CCCCCCCCCCccc----eecHHHHhhhhc-cCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcC
Confidence             3689999999999  8899999998742    344444332222 4689999999999999999999999999999987


Q ss_pred             CC-----ccc----c-ccCCCC-CCeeeccceeEEccCC---cEEecCCc-EEeecEEEEecCccCCCCCC---------
Q 013303          230 VA-----DET----H-EKQPGY-DNMWLHSMVERANEDG---TVVFRNGR-VVSADVIMHCTGYKYNYPFL---------  285 (446)
Q Consensus       230 ~~-----~~~----~-~~~~~~-~~v~~~~~v~~i~~~~---~v~~~dG~-~~~~D~vi~atG~~~~~~~l---------  285 (446)
                      +.     +..    + +.+.+. .++..+..|.++..++   .|.+.||+ ++++|.||+|||++|+.++|         
T Consensus       199 ~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~  278 (463)
T 2r9z_A          199 DRLLFQFDPLLSATLAENMHAQGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEV  278 (463)
T ss_dssp             SSSSTTSCHHHHHHHHHHHHHTTCEEESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCEEESCTTSCHHHHTCCC
T ss_pred             CccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCCCcCCCCCCchhcCCcc
Confidence            64     110    1 111112 2556677888887532   37788999 89999999999999998754         


Q ss_pred             CCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCC
Q 013303          286 ETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       286 ~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~  343 (446)
                      ++.|.|.+|+.++          ++.|+||++|++.. ....+.+..||+.+|.++.|.
T Consensus       279 ~~~G~i~vd~~~~----------t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~  327 (463)
T 2r9z_A          279 QSNGMVPTDAYQN----------TNVPGVYALGDITGRDQLTPVAIAAGRRLAERLFDG  327 (463)
T ss_dssp             CTTSCCCCCTTSB----------CSSTTEEECGGGGTSCCCHHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCEeECCCCc----------cCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence            2345566666654          55899999999864 345678899999999999875

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=99.97  E-value=7.1e-33  Score=279.07  Aligned_cols=286  Identities=17%  Similarity=0.166  Sum_probs=194.7

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCc-cCceeecCCCCCcccC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSL-YKSLRVNLPRELMGFQ   81 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~-y~~l~~~~~~~~~~~~   81 (446)
                      +||+|||||++|+++|..|++.|++|+|||+.+.+||+|.+.        ||.|++.++.... +..+. +.+.      
T Consensus         5 ~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~--------gciPsk~l~~~a~~~~~~~-~~~~------   69 (466)
T 3l8k_A            5 YDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYS--------GCVPSKTVREVIQTAWRLT-NIAN------   69 (466)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHH--------SHHHHHHHHHHHHHHHHHH-HHHC------
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCccccc--------CCCchHHHHHHHHHHHHHH-hccc------
Confidence            699999999999999999999999999999999999999875        5665543332211 11110 0000      


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHH------------HHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLR------------YLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV  149 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~------------yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~  149 (446)
                       +             ........+.+            ++....++.++.  +.. .+|..++.   +.+.|...++  +
T Consensus        70 -~-------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~-g~v~~id~---~~~~V~~~~g--~  127 (466)
T 3l8k_A           70 -V-------------KIPLDFSTVQDRKDYVQELRFKQHKRNMSQYETLT--FYK-GYVKIKDP---THVIVKTDEG--K  127 (466)
T ss_dssp             -S-------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHTTCTTEE--EES-EEEEEEET---TEEEEEETTS--C
T ss_pred             -C-------------CCCcCHHHHHHHHHhheeccccchHHHHHHhCCCE--EEE-eEEEEecC---CeEEEEcCCC--c
Confidence             0             01112223332            222233333443  333 36666653   4566665433  2


Q ss_pred             eEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecC---CCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEE
Q 013303          150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYR---IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIA  226 (446)
Q Consensus       150 ~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~---~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~  226 (446)
                      ..++.||+||+|||  +.|+.|++||.+.    +.++.++.   ......+++|+|||+|.+|+|+|..|++.+.+|+++
T Consensus       128 ~~~~~~d~lviAtG--~~p~~p~i~G~~~----~~t~~~~~~~~~~l~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv  201 (466)
T 3l8k_A          128 EIEAETRYMIIASG--AETAKLRLPGVEY----CLTSDDIFGYKTSFRKLPQDMVIIGAGYIGLEIASIFRLMGVQTHII  201 (466)
T ss_dssp             EEEEEEEEEEECCC--EEECCCCCTTGGG----SBCHHHHHSTTCSCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             EEEEecCEEEECCC--CCccCCCCCCccc----eEeHHHHHHHHHHHhhCCCeEEEECCCHHHHHHHHHHHHcCCEEEEE
Confidence            33499999999999  8999999999862    33444332   112235799999999999999999999999999999


Q ss_pred             EecCC------ccc----cccCCCCCCeeeccceeEEccCC--c--EEec--CCc--EEeecEEEEecCccCCCCC-CC-
Q 013303          227 SRSVA------DET----HEKQPGYDNMWLHSMVERANEDG--T--VVFR--NGR--VVSADVIMHCTGYKYNYPF-LE-  286 (446)
Q Consensus       227 ~r~~~------~~~----~~~~~~~~~v~~~~~v~~i~~~~--~--v~~~--dG~--~~~~D~vi~atG~~~~~~~-l~-  286 (446)
                      .+.+.      +..    +.+..+ .++..+..|.++..++  .  +.+.  ||+  ++++|.||+|+|++|+.++ +. 
T Consensus       202 ~~~~~~l~~~~d~~~~~~l~~~l~-v~i~~~~~v~~i~~~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G~~p~~~l~l~~  280 (466)
T 3l8k_A          202 EMLDRALITLEDQDIVNTLLSILK-LNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGARE  280 (466)
T ss_dssp             CSSSSSCTTSCCHHHHHHHHHHHC-CCEECSCCEEEEEEEETTEEEEEECCTTSCCEEEEESCEEECCCEEECCCTTTGG
T ss_pred             EeCCcCCCCCCCHHHHHHHHhcCE-EEEEECCEEEEEEEcCCCcEEEEEEecCCceEEEEcCEEEECcCCCcccccchhh
Confidence            98764      101    111111 4566677888887532  2  6666  676  7899999999999999883 32 


Q ss_pred             ------CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCC
Q 013303          287 ------TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       287 ------~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~  343 (446)
                            +.| |.+|+..+          ++.|+||++|++.. ....+.+..||+.+|.++.|.
T Consensus       281 ~gl~~~~~G-i~vd~~~~----------t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~  333 (466)
T 3l8k_A          281 IGLSISKTG-IVVDETMK----------TNIPNVFATGDANGLAPYYHAAVRMSIAAANNIMAN  333 (466)
T ss_dssp             GTCCBCSSS-BCCCTTCB----------CSSTTEEECGGGTCSCCSHHHHHHHHHHHHHHHHTT
T ss_pred             cCceeCCCC-EeECCCcc----------CCCCCEEEEEecCCCCccHhHHHHHHHHHHHHHhCC
Confidence                  344 55555544          45899999999875 345678899999999999875

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=99.97  E-value=3e-32  Score=274.83  Aligned_cols=298  Identities=17%  Similarity=0.191  Sum_probs=201.2

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCC-ccCceeecCCCCCcc
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMG   79 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~-~y~~l~~~~~~~~~~   79 (446)
                      |++||+|||||++|+++|..|++.|++|+|||+++.+||+|.+.        ||.|++.++.+. .+..+..+.+.  ++
T Consensus         1 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~--------g~~psk~l~~~~~~~~~~~~~~~~--~g   70 (468)
T 2qae_A            1 NPYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCLNV--------GCIPSKALLHATHLYHDAHANFAR--YG   70 (468)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHH--------SHHHHHHHHHHHHHHHHHHHTHHH--HT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCCCc--------CcHhHHHHHHHHHHHHHHHHHHHh--cC
Confidence            56899999999999999999999999999999998999999864        555544332211 11111000000  00


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCCHHH-----------HHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCC
Q 013303           80 FQAYPFVARNYEGSVDLRRYPGHEE-----------VLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDD  148 (446)
Q Consensus        80 ~~d~~~~~~~~~~~~~~~~~~~~~~-----------v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~  148 (446)
                      +   +...         ........           +...+.++.++.+++  ++.++.+ .++  . +.++|...+  +
T Consensus        71 ~---~~~~---------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~--~~~g~~~-~i~--~-~~~~v~~~~--G  130 (468)
T 2qae_A           71 L---MGGE---------GVTMDSAKMQQQKERAVKGLTGGVEYLFKKNKVT--YYKGEGS-FET--A-HSIRVNGLD--G  130 (468)
T ss_dssp             E---ECGG---------GCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCE--EEEEEEE-EEE--T-TEEEEEETT--S
T ss_pred             c---ccCC---------CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEEE-Eee--C-CEEEEEecC--C
Confidence            0   0000         00011122           233345666677877  6666544 343  2 445555432  3


Q ss_pred             ceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEe
Q 013303          149 VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR  228 (446)
Q Consensus       149 ~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r  228 (446)
                      ...++.||+||+|||  +.|..|+++|.+. . .++++.++..... .+++|+|||+|.+|+|+|..|++.|.+|+++.+
T Consensus       131 ~~~~~~~d~lviAtG--~~p~~p~~~g~~~-~-~v~t~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~  205 (468)
T 2qae_A          131 KQEMLETKKTIIATG--SEPTELPFLPFDE-K-VVLSSTGALALPR-VPKTMVVIGGGVIGLELGSVWARLGAEVTVVEF  205 (468)
T ss_dssp             CEEEEEEEEEEECCC--EEECCBTTBCCCS-S-SEECHHHHHTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             ceEEEEcCEEEECCC--CCcCCCCCCCCCc-C-ceechHHHhhccc-CCceEEEECCCHHHHHHHHHHHHhCCEEEEEec
Confidence            235799999999999  7899999988754 1 3556555544332 579999999999999999999999999999998


Q ss_pred             cCC-----c----ccc-ccC-CCCC-CeeeccceeEEccCC-c--EEec--CC--cEEeecEEEEecCccCCCCCCC---
Q 013303          229 SVA-----D----ETH-EKQ-PGYD-NMWLHSMVERANEDG-T--VVFR--NG--RVVSADVIMHCTGYKYNYPFLE---  286 (446)
Q Consensus       229 ~~~-----~----~~~-~~~-~~~~-~v~~~~~v~~i~~~~-~--v~~~--dG--~~~~~D~vi~atG~~~~~~~l~---  286 (446)
                      .+.     +    ..+ +.+ .+.+ ++.....|.++..++ .  +.+.  ||  +++++|.||+|+|++|+.++|.   
T Consensus       206 ~~~~l~~~d~~~~~~l~~~l~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~  285 (468)
T 2qae_A          206 APRCAPTLDEDVTNALVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLDK  285 (468)
T ss_dssp             SSSSSTTSCHHHHHHHHHHHHHHTCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCEEECCTTSCHHH
T ss_pred             CCcccccCCHHHHHHHHHHHhhcCCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCcccCCCCCCchh
Confidence            864     1    111 112 2222 566667888887543 2  5555  77  5789999999999999998742   


Q ss_pred             ------CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc--cCchhHHHHHHHHHHHHHcCC
Q 013303          287 ------TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK--VIPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       287 ------~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~--~~~~~~~~~qa~~~a~~l~g~  343 (446)
                            +.|.|.+|++++          ++.|+||++|++..  ....+.+..||+.+|.++.|.
T Consensus       286 ~gl~~~~~G~i~vd~~~~----------t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~  340 (468)
T 2qae_A          286 INVAKNERGFVKIGDHFE----------TSIPDVYAIGDVVDKGPMLAHKAEDEGVACAEILAGK  340 (468)
T ss_dssp             HTCCBCTTSCBCCCTTSB----------CSSTTEEECGGGBSSSCSCHHHHHHHHHHHHHHHTTC
T ss_pred             cCCccCCCCCEeECCCcc----------cCCCCEEEeeccCCCCCccHhHHHHHHHHHHHHHcCC
Confidence                  345677776655          55899999999876  345677899999999999985

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=99.97  E-value=8.2e-32  Score=271.92  Aligned_cols=284  Identities=17%  Similarity=0.170  Sum_probs=183.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG   79 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~   79 (446)
                      ++||+|||||++||++|..|++.  |++|+|||+++.++  |...        +.         +.+      ....   
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~--~~~~--------gl---------~~~------~~g~---   54 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRIS--YGGC--------GI---------PYY------VSGE---   54 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC---------------------------------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCccc--cccc--------cc---------chh------hcCC---
Confidence            57999999999999999999998  89999999987654  1110        00         000      0000   


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEE
Q 013303           80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAV  158 (446)
Q Consensus        80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~V  158 (446)
                         ++..         ...++...++..++..+.+++++.  ++++++|+.+++..   ..+.+.+. .+...++.||+|
T Consensus        55 ---~~~~---------~~~~~~~~~~~~~~~~~~~~~gi~--~~~~~~V~~id~~~---~~v~~~~~~~g~~~~~~~d~l  117 (472)
T 3iwa_A           55 ---VSNI---------ESLQATPYNVVRDPEFFRINKDVE--ALVETRAHAIDRAA---HTVEIENLRTGERRTLKYDKL  117 (472)
T ss_dssp             --------------------------------------CE--EECSEEEEEEETTT---TEEEEEETTTCCEEEEECSEE
T ss_pred             ---CCch---------HHhccccchhccCHHHHhhhcCcE--EEECCEEEEEECCC---CEEEEeecCCCCEEEEECCEE
Confidence               0000         011111223566777777778887  88999999998755   34455441 233457899999


Q ss_pred             EEccCCCCCCccCCCCCCCCCCccEEEeeecCCC-------CCCCCCEEEEEecCCcHHHHHHHHhcc-CCEEEEEEecC
Q 013303          159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP-------NPFQDQVVILIGHYASGLDIKRDLAGF-AKEVHIASRSV  230 (446)
Q Consensus       159 VvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~-------~~~~~k~VvVVG~G~sg~eia~~l~~~-~~~V~l~~r~~  230 (446)
                      |+|||  +.|..|++||.+. . .+.+.....+.       ....+++|+|||+|.+|+|+|..+++. +.+|+++.+.+
T Consensus       118 viAtG--~~p~~p~i~G~~~-~-~v~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~  193 (472)
T 3iwa_A          118 VLALG--SKANRPPVEGMDL-A-GVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELAD  193 (472)
T ss_dssp             EECCC--EEECCCSCTTTTS-B-TEEECCSHHHHHHHHHHCCTTSCSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSS
T ss_pred             EEeCC--CCcCCCCCCCCCC-C-CEEEeCCHHHHHHHHHHhhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccC
Confidence            99999  8999999999862 2 23333322111       113479999999999999999999999 99999999876


Q ss_pred             Cc----------cccc-cCCCC-CCeeeccceeEEcc-CCc--EEecCCcEEeecEEEEecCccCCCCCC-------CCC
Q 013303          231 AD----------ETHE-KQPGY-DNMWLHSMVERANE-DGT--VVFRNGRVVSADVIMHCTGYKYNYPFL-------ETN  288 (446)
Q Consensus       231 ~~----------~~~~-~~~~~-~~v~~~~~v~~i~~-~~~--v~~~dG~~~~~D~vi~atG~~~~~~~l-------~~~  288 (446)
                      ..          ..+. .+.+. .++.....|.++.. ++.  +.+.||+++++|.||+|||+.|+.+++       ++.
T Consensus       194 ~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~~  273 (472)
T 3iwa_A          194 QIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEGENGKVARVITDKRTLDADLVILAAGVSPNTQLARDAGLELDPR  273 (472)
T ss_dssp             SSSTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEESSCEEECSEEEECSCEEECCHHHHHHTCCBCTT
T ss_pred             cccccccCHHHHHHHHHHHHhcCCEEEeCCEEEEEEccCCeEEEEEeCCCEEEcCEEEECCCCCcCHHHHHhCCccCCCC
Confidence            41          0011 11112 25566678999876 343  678899999999999999999998764       345


Q ss_pred             CeeeeCCCCcccccccccCCCCCCCeEEecCCCc-----------cCchhHHHHHHHHHHHHHcCCC
Q 013303          289 GIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-----------VIPFPFFELQSKWIASVLSGRI  344 (446)
Q Consensus       289 g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-----------~~~~~~~~~qa~~~a~~l~g~~  344 (446)
                      |.|.+|+..+          ++.|+||++|++..           ....+.+..||+.+|+++.|..
T Consensus       274 g~i~vd~~~~----------t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  330 (472)
T 3iwa_A          274 GAIIVDTRMR----------TSDPDIFAGGDCVTIPNLVTGKPGFFPLGSMANRQGRVIGTNLADGD  330 (472)
T ss_dssp             CCEECCTTCB----------CSSTTEEECGGGEEEEBTTTSSEECCCCTTHHHHHHHHHHHHHTTCC
T ss_pred             CCEEECCCcc----------cCCCCEEEeccceecccccCCceeecchHHHHHHHHHHHHHHhcCCC
Confidence            6677777655          55899999998752           1245678999999999999863

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=99.97  E-value=5.9e-32  Score=267.92  Aligned_cols=273  Identities=19%  Similarity=0.181  Sum_probs=190.8

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCCc--EEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCc
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGHT--VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM   78 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~--v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~   78 (446)
                      |+++|+|||||+||+++|..|++.|++  |+|||+++..+....                     .+...+..    ...
T Consensus         1 M~~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~---------------------~l~~~~~~----g~~   55 (410)
T 3ef6_A            1 MATHVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRP---------------------SLSKAVLD----GSL   55 (410)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSG---------------------GGGTHHHH----TSS
T ss_pred             CCCCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCc---------------------cccHHHhC----CCC
Confidence            678999999999999999999999987  999999875432100                     00000000    000


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEE
Q 013303           79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV  158 (446)
Q Consensus        79 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~V  158 (446)
                      ...++               +        +..++.++.+++  ++++++|+.+++..   ++|++.++.    ++.||+|
T Consensus        56 ~~~~~---------------~--------~~~~~~~~~~i~--~~~~~~v~~id~~~---~~v~~~~g~----~~~~d~l  103 (410)
T 3ef6_A           56 ERPPI---------------L--------AEADWYGEARID--MLTGPEVTALDVQT---RTISLDDGT----TLSADAI  103 (410)
T ss_dssp             SSCCB---------------S--------SCTTHHHHTTCE--EEESCCEEEEETTT---TEEEETTSC----EEECSEE
T ss_pred             CHHHh---------------c--------CCHHHHHHCCCE--EEeCCEEEEEECCC---CEEEECCCC----EEECCEE
Confidence            00000               0        011234456777  88999999998643   677776553    7899999


Q ss_pred             EEccCCCCCCccCCCCCCCCCCccEEEeeecCCC-----CCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc-
Q 013303          159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP-----NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD-  232 (446)
Q Consensus       159 VvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~-----~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~-  232 (446)
                      |+|||  +.|+.|++||.+.  ..+.+.....+.     ....+++|+|||+|.+|+|+|..+++.+.+|+++.+.+.. 
T Consensus       104 vlAtG--~~p~~~~ipG~~~--~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l  179 (410)
T 3ef6_A          104 VIATG--SRARTMALPGSQL--PGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELL  179 (410)
T ss_dssp             EECCC--EEECCCCCTTTTS--TTEECCCSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred             EEccC--CcccCCCCCCccc--cceEEeccHHHHHHHHHHhccCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccc
Confidence            99999  7899999999763  223332222111     1235799999999999999999999999999999988751 


Q ss_pred             -----c----cccc-CCCC-CCeeeccceeEEccCC---cEEecCCcEEeecEEEEecCccCCCCCCCCC-----Ceeee
Q 013303          233 -----E----THEK-QPGY-DNMWLHSMVERANEDG---TVVFRNGRVVSADVIMHCTGYKYNYPFLETN-----GIVTV  293 (446)
Q Consensus       233 -----~----~~~~-~~~~-~~v~~~~~v~~i~~~~---~v~~~dG~~~~~D~vi~atG~~~~~~~l~~~-----g~i~~  293 (446)
                           .    .+.+ +.+. .++..+..|+++..++   .|.++||+++++|.||+|+|+.|+.+++...     +.|.+
T Consensus       180 ~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~gi~v  259 (410)
T 3ef6_A          180 VRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGAEPADQLARQAGLACDRGVIV  259 (410)
T ss_dssp             HHHHCHHHHHHHHHHHHHHTCEEECSCCEEEEECSSSCCEEEETTSCEEECSEEEECSCEEECCHHHHHTTCCBSSSEEC
T ss_pred             hhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEeccCcEEEEEECCCCEEEcCEEEEeeCCeecHHHHHhCCCccCCeEEE
Confidence                 1    1111 1111 2556678899997654   3889999999999999999999998765322     22666


Q ss_pred             CCCCcccccccccCCCCCCCeEEecCCCccC----------chhHHHHHHHHHHHHHcCCC
Q 013303          294 DDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI----------PFPFFELQSKWIASVLSGRI  344 (446)
Q Consensus       294 ~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~----------~~~~~~~qa~~~a~~l~g~~  344 (446)
                      |+..+          ++.|+||++|++....          .++.+..||+.+|+++.|+.
T Consensus       260 d~~~~----------t~~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~  310 (410)
T 3ef6_A          260 DHCGA----------TLAKGVFAVGDVASWPLRAGGRRSLETYMNAQRQAAAVAAAILGKN  310 (410)
T ss_dssp             CTTSB----------CSSTTEEECGGGEEEEBTTSSEECCCCHHHHHHHHHHHHHHHTTCC
T ss_pred             ccCee----------ECCCCEEEEEcceeccCCCCCeeeechHHHHHHHHHHHHHHHcCCC
Confidence            66654          5589999999886432          24788999999999999874

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=99.97  E-value=4.2e-32  Score=274.18  Aligned_cols=297  Identities=15%  Similarity=0.127  Sum_probs=200.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCC-ccCceeecCCCCCccc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF   80 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~-~y~~l~~~~~~~~~~~   80 (446)
                      ++||+|||||++|+++|..|++.|++|+|||+++.+||+|.+.        ||.|++.++.+. .+..+..      ..+
T Consensus         6 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~--------g~~Psk~l~~~~~~~~~~~~------~~~   71 (474)
T 1zmd_A            6 DADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNV--------GCIPSKALLNNSHYYHMAHG------TDF   71 (474)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHHHH--------SHHHHHHHHHHHHHHHHHHS------SHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCccccc--------CccchHHHHHHHHHHHHhhh------hhH
Confidence            4799999999999999999999999999999998999999864        555554333211 1111100      000


Q ss_pred             CCCCCCcCCCCCCCCCCCCCCHHHHHH-----------HHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCc
Q 013303           81 QAYPFVARNYEGSVDLRRYPGHEEVLR-----------YLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV  149 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~-----------yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~  149 (446)
                      ..+.++..        ....+..++..           .+.++.++.+++  ++.++.+ .++  . +.++|.+.++  .
T Consensus        72 ~~~g~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~--~~~g~~~-~~~--~-~~~~v~~~~g--g  135 (474)
T 1zmd_A           72 ASRGIEMS--------EVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVV--HVNGYGK-ITG--K-NQVTATKADG--G  135 (474)
T ss_dssp             HHTTEEES--------CEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEESEEE-EEE--T-TEEEEECTTS--C
T ss_pred             hhCccccC--------CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEEE-Eec--C-CEEEEEecCC--C
Confidence            00111000        00011222222           235556667776  7776543 343  2 4566654321  1


Q ss_pred             eEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303          150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS  229 (446)
Q Consensus       150 ~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~  229 (446)
                      ..++.||+||+|||  +.|..|+++|.+..  .++++.++..... .+++|+|||+|.+|+|+|..|++.|.+|+++.+.
T Consensus       136 ~~~~~~d~lViAtG--s~p~~p~i~g~~~~--~v~t~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  210 (474)
T 1zmd_A          136 TQVIDTKNILIATG--SEVTPFPGITIDED--TIVSSTGALSLKK-VPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFL  210 (474)
T ss_dssp             EEEEEEEEEEECCC--EEECCCTTCCCCSS--SEECHHHHTTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             cEEEEeCEEEECCC--CCCCCCCCCCCCcC--cEEcHHHHhhccc-cCceEEEECCCHHHHHHHHHHHHcCCEEEEEecc
Confidence            24799999999999  78999999997642  3667666554433 4699999999999999999999999999999987


Q ss_pred             CCc------cc----c-ccCCCC-CCeeeccceeEEccCC-c-EEe-------cCCcEEeecEEEEecCccCCCCCCC--
Q 013303          230 VAD------ET----H-EKQPGY-DNMWLHSMVERANEDG-T-VVF-------RNGRVVSADVIMHCTGYKYNYPFLE--  286 (446)
Q Consensus       230 ~~~------~~----~-~~~~~~-~~v~~~~~v~~i~~~~-~-v~~-------~dG~~~~~D~vi~atG~~~~~~~l~--  286 (446)
                      +..      ..    + +.+.+. -++..+..|.++..++ . +.+       .+|+++++|.||+|+|++|+.++|.  
T Consensus       211 ~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~~l~l~  290 (474)
T 1zmd_A          211 GHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLE  290 (474)
T ss_dssp             SSSSCSSCCHHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEECCTTSSHH
T ss_pred             CccCCcccCHHHHHHHHHHHHHCCCEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcCCCcCCch
Confidence            641      00    1 111112 2556667888887543 2 332       3567899999999999999998742  


Q ss_pred             -------CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCC
Q 013303          287 -------TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       287 -------~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~  343 (446)
                             +.|.|.+|++++          ++.|+||++|++... ...+.+..||+.+|.++.|.
T Consensus       291 ~~g~~~~~~G~i~vd~~~~----------t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~  345 (474)
T 1zmd_A          291 ELGIELDPRGRIPVNTRFQ----------TKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAGG  345 (474)
T ss_dssp             HHTCCCCTTSCCCCCTTCB----------CSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTTC
T ss_pred             hcCCccCCCCCEEECcCCc----------cCCCCEEEeeecCCCCccHHHHHHHHHHHHHHhcCC
Confidence                   245566666654          558999999998753 34578899999999999986

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.97  E-value=2.1e-32  Score=274.95  Aligned_cols=298  Identities=17%  Similarity=0.221  Sum_probs=197.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCC-ccCceeecCCCCCccc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF   80 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~-~y~~l~~~~~~~~~~~   80 (446)
                      ++||+|||||++|+++|..|++.|++|+|||+. .+||.|...        ||.|++.++... .+..++ ......+.+
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~~~--------g~~p~k~l~~~~~~~~~~~-~~~~~g~~~   72 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCLNV--------GCIPSKALISASHRYEQAK-HSEEMGIKA   72 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHT--------SHHHHHHHHHHHHHHHHHH-TCGGGTEEC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCcCc--------CchhhHHHHHHHHHHHHHH-HHHhcCccc
Confidence            579999999999999999999999999999997 899999764        555544332211 111111 000000000


Q ss_pred             CCCCCCcCCCCCCCCCCCC-CCH----HHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEE
Q 013303           81 QAYPFVARNYEGSVDLRRY-PGH----EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF  155 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~-~~~----~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~  155 (446)
                      .+...+         ...+ ...    ..+.+++.+.+++.+++  ++.++.+. ++  . +.++|...++   ..++.|
T Consensus        73 ~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~~~~~gv~--~~~g~~~~-id--~-~~v~V~~~~G---~~~i~~  134 (455)
T 1ebd_A           73 ENVTID---------FAKVQEWKASVVKKLTGGVEGLLKGNKVE--IVKGEAYF-VD--A-NTVRVVNGDS---AQTYTF  134 (455)
T ss_dssp             CSCEEC---------HHHHHHHHHHHHHHHHHHHHHHHHTTTCE--EEESEEEE-EE--T-TEEEEEETTE---EEEEEC
T ss_pred             CCCccC---------HHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEEEE-cc--C-CeEEEEeCCC---cEEEEe
Confidence            000000         0000 001    12444556667777776  77776553 43  2 4566654322   147899


Q ss_pred             cEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc---
Q 013303          156 DAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD---  232 (446)
Q Consensus       156 d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~---  232 (446)
                      |+||+|||  +.|..|+++|.+.   .+.++.+...... .+++|+|||+|.+|+|+|..|++.|.+|+++.+.+..   
T Consensus       135 d~lViATG--s~p~~~~~~g~~~---~v~~~~~~~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~  208 (455)
T 1ebd_A          135 KNAIIATG--SRPIELPNFKFSN---RILDSTGALNLGE-VPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG  208 (455)
T ss_dssp             SEEEECCC--EEECCBTTBCCCS---SEECHHHHHTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT
T ss_pred             CEEEEecC--CCCCCCCCCCccc---eEecHHHHhcccc-CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc
Confidence            99999999  8899999888754   3556555433322 4699999999999999999999999999999987641   


Q ss_pred             --cc----c-ccCCCC-CCeeeccceeEEccCC-c--EEec---CCcEEeecEEEEecCccCCCCCC--CC-------CC
Q 013303          233 --ET----H-EKQPGY-DNMWLHSMVERANEDG-T--VVFR---NGRVVSADVIMHCTGYKYNYPFL--ET-------NG  289 (446)
Q Consensus       233 --~~----~-~~~~~~-~~v~~~~~v~~i~~~~-~--v~~~---dG~~~~~D~vi~atG~~~~~~~l--~~-------~g  289 (446)
                        ..    + +.+.+. -++..+..|.++..++ .  +.+.   +++++++|.||+|+|++|+.++|  +.       .|
T Consensus       209 ~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G  288 (455)
T 1ebd_A          209 FEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRG  288 (455)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCEEESCSSSSTTTTTCCBCTTS
T ss_pred             cCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCCCcccCcCChhhcCCccCCCC
Confidence              00    1 111122 2566667888887543 2  4444   45679999999999999999884  33       23


Q ss_pred             eeeeCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCC
Q 013303          290 IVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       290 ~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~  343 (446)
                      .|.+|++++          ++.|+||++|++... ...+.+..||+.+|.++.|.
T Consensus       289 ~i~vd~~~~----------t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~  333 (455)
T 1ebd_A          289 LIEVDQQCR----------TSVPNIFAIGDIVPGPALAHKASYEGKVAAEAIAGH  333 (455)
T ss_dssp             CBCCCTTCB----------CSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTSC
T ss_pred             CEeeCCCcc----------cCCCCEEEEeccCCCcccHHHHHHHHHHHHHHHcCC
Confidence            455554433          458999999998653 34577899999999999985

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=99.97  E-value=1.1e-31  Score=272.59  Aligned_cols=302  Identities=17%  Similarity=0.166  Sum_probs=202.1

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHC---CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCC-ccCceeecCCCC
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLRE---GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRE   76 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~---g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~-~y~~l~~~~~~~   76 (446)
                      |.+||+|||||++|+++|..|++.   |++|+|||+++ +||+|...        ||.|++.++.+. .+..+.      
T Consensus         1 M~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~~--------g~~psk~l~~~a~~~~~~~------   65 (499)
T 1xdi_A            1 MVTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLD--------DCVPSKTFIASTGLRTELR------   65 (499)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHT--------SHHHHHHHHHHHHHHHHHT------
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccCc--------CccchHHHHHHHHHHHHHH------
Confidence            568999999999999999999999   99999999987 99998864        555544332221 111100      


Q ss_pred             CcccCCCCCCcCCCCCCCCCCCCCCHHH-----------HHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCC-CceEEEEE
Q 013303           77 LMGFQAYPFVARNYEGSVDLRRYPGHEE-----------VLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSR  144 (446)
Q Consensus        77 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~-----------v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~-~~~~v~~~  144 (446)
                        .+..+.++..      ......+...           +..++.++.++.+++  ++.++ +..+++..+ +...+.+.
T Consensus        66 --~~~~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g~-~~~i~~~~~~~~~~~~V~  134 (499)
T 1xdi_A           66 --RAPHLGFHID------FDDAKISLPQIHARVKTLAAAQSADITAQLLSMGVQ--VIAGR-GELIDSTPGLARHRIKAT  134 (499)
T ss_dssp             --TTTTTTBC------------CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEESE-EEECCSSSCCSSEEEEEE
T ss_pred             --HHHhCCCccc------cCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEeE-EEEecCcccCCCCEEEEE
Confidence              0111111100      0000112233           333456667777877  77665 665543100 01334443


Q ss_pred             eCCCceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEE
Q 013303          145 KKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVH  224 (446)
Q Consensus       145 ~~~~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~  224 (446)
                      ..+++..++.||+||+|||  +.|..|+++|.+..  .++++.+...... .+++|+|||+|.+|+|+|..+++.+.+|+
T Consensus       135 ~~~g~~~~~~~d~lviATG--s~p~~p~i~g~~~~--~v~~~~~~~~~~~-~~~~vvViGgG~ig~E~A~~l~~~g~~Vt  209 (499)
T 1xdi_A          135 AADGSTSEHEADVVLVATG--ASPRILPSAQPDGE--RILTWRQLYDLDA-LPDHLIVVGSGVTGAEFVDAYTELGVPVT  209 (499)
T ss_dssp             CTTSCEEEEEESEEEECCC--EEECCCGGGCCCSS--SEEEGGGGGGCSS-CCSSEEEESCSHHHHHHHHHHHHTTCCEE
T ss_pred             eCCCcEEEEEeCEEEEcCC--CCCCCCCCCCCCcC--cEEehhHhhhhhc-cCCeEEEECCCHHHHHHHHHHHHcCCeEE
Confidence            3333224689999999999  88999999997642  3566655544332 46899999999999999999999999999


Q ss_pred             EEEecCCc-----c----cc-ccCCCC-CCeeeccceeEEccCC-c--EEecCCcEEeecEEEEecCccCCCCC--CCCC
Q 013303          225 IASRSVAD-----E----TH-EKQPGY-DNMWLHSMVERANEDG-T--VVFRNGRVVSADVIMHCTGYKYNYPF--LETN  288 (446)
Q Consensus       225 l~~r~~~~-----~----~~-~~~~~~-~~v~~~~~v~~i~~~~-~--v~~~dG~~~~~D~vi~atG~~~~~~~--l~~~  288 (446)
                      ++.+.+..     .    .+ +.+.+. .++..+..|.++..++ .  +.+.||+++++|.||+|+|++|+.++  ++..
T Consensus       210 lv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~~l~l~~~  289 (499)
T 1xdi_A          210 VVASQDHVLPYEDADAALVLEESFAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNTSGLGLERV  289 (499)
T ss_dssp             EECSSSSSSCCSSHHHHHHHHHHHHHTTCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECCSSSCTTTT
T ss_pred             EEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCCcCCCcCCchhc
Confidence            99987641     0    11 111122 2566677899987654 2  55678889999999999999999988  4332


Q ss_pred             -------CeeeeCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCC
Q 013303          289 -------GIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       289 -------g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~  343 (446)
                             |.|.+|+.++          ++.|+||++|++... ...+.+..||+.+|.++.|.
T Consensus       290 gl~~~~~G~i~Vd~~~~----------t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~  342 (499)
T 1xdi_A          290 GIQLGRGNYLTVDRVSR----------TLATGIYAAGDCTGLLPLASVAAMQGRIAMYHALGE  342 (499)
T ss_dssp             TCCCBTTTBCCCCSSSB----------CSSTTEEECSGGGTSCSCHHHHHHHHHHHHHHHTTC
T ss_pred             CceECCCCCEEECCCcc----------cCCCCEEEEeccCCCcccHHHHHHHHHHHHHHhcCC
Confidence                   3455554443          458999999998754 34577899999999999986

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=99.97  E-value=4.5e-32  Score=274.34  Aligned_cols=296  Identities=16%  Similarity=0.177  Sum_probs=198.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCC-ccCceeecCCCCCccc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF   80 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~-~y~~l~~~~~~~~~~~   80 (446)
                      .+||+|||||++|+++|..|++.|++|+|||+.+.+||.|...        ||.|++.++... .+..+.. ...  +  
T Consensus         6 ~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~--------g~~psk~ll~~~~~~~~~~~-~~~--~--   72 (482)
T 1ojt_A            6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNV--------GCIPSKALLHNAAVIDEVRH-LAA--N--   72 (482)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHH--------SHHHHHHHHHHHHHHHHHHH-GGG--G--
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCceeee--------cccchHHHHHHHHHHHHHHH-HHh--C--
Confidence            3689999999999999999999999999999988999998764        454443322211 1111100 000  0  


Q ss_pred             CCCCCCcCCCCCCCCCCCCCCHHHHH-----------HHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC---
Q 013303           81 QAYPFVARNYEGSVDLRRYPGHEEVL-----------RYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK---  146 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~~~v~-----------~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~---  146 (446)
                       ..++..          .......+.           +.+...+++.+++  ++.++.+. +  .. +.+.|...++   
T Consensus        73 -gi~~~~----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~--~~~g~~~~-~--~~-~~v~v~~~~g~~~  135 (482)
T 1ojt_A           73 -GIKYPE----------PELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVD--VIQGDGQF-L--DP-HHLEVSLTAGDAY  135 (482)
T ss_dssp             -TCCCCC----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEEEEEEE-E--ET-TEEEEEEEEEEET
T ss_pred             -CcccCC----------CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcE--EEeeEEEE-c--cC-CEEEEEecCCccc
Confidence             011100          011122222           2344556667776  77766544 2  22 4566654433   


Q ss_pred             -----CCceEEEEEcEEEEccCCCCCCccCC-CCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccC
Q 013303          147 -----DDVVEEETFDAVVVCNGHFSVPRLAQ-VPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFA  220 (446)
Q Consensus       147 -----~~~~~~~~~d~VVvAtG~~s~p~~p~-i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~  220 (446)
                           +++..++.||+||+|||  +.|..|+ ++ .+.   .++++.+...... .+++|+|||+|.+|+|+|..|++.|
T Consensus       136 ~~~~~~g~~~~i~ad~lViAtG--s~p~~~~~i~-~~~---~v~~~~~~~~~~~-~~~~vvViGgG~ig~E~A~~l~~~G  208 (482)
T 1ojt_A          136 EQAAPTGEKKIVAFKNCIIAAG--SRVTKLPFIP-EDP---RIIDSSGALALKE-VPGKLLIIGGGIIGLEMGTVYSTLG  208 (482)
T ss_dssp             TEEEEEEEEEEEEEEEEEECCC--EEECCCSSCC-CCT---TEECHHHHTTCCC-CCSEEEEESCSHHHHHHHHHHHHHT
T ss_pred             ccccccCcceEEEcCEEEECCC--CCCCCCCCCC-ccC---cEEcHHHHhcccc-cCCeEEEECCCHHHHHHHHHHHHcC
Confidence                 12234789999999999  7788776 55 332   4666665544332 4799999999999999999999999


Q ss_pred             CEEEEEEecCC-----cc----cc-ccCCCCC-CeeeccceeEEccCC---cEEecC----CcEEeecEEEEecCccCCC
Q 013303          221 KEVHIASRSVA-----DE----TH-EKQPGYD-NMWLHSMVERANEDG---TVVFRN----GRVVSADVIMHCTGYKYNY  282 (446)
Q Consensus       221 ~~V~l~~r~~~-----~~----~~-~~~~~~~-~v~~~~~v~~i~~~~---~v~~~d----G~~~~~D~vi~atG~~~~~  282 (446)
                      .+|+++.+.+.     +.    .+ +.+.+.+ ++..+..|.++..++   .+.+.|    |+++++|.||+|+|++|+.
T Consensus       209 ~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~  288 (482)
T 1ojt_A          209 SRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNG  288 (482)
T ss_dssp             CEEEEECSSSSSSTTSCHHHHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCEEECG
T ss_pred             CeEEEEEECCccccccCHHHHHHHHHHHHhcCCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCCCcCC
Confidence            99999998864     11    11 1112222 455667888887543   267777    7889999999999999998


Q ss_pred             CCC--CC-------CCeeeeCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCCC
Q 013303          283 PFL--ET-------NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGRI  344 (446)
Q Consensus       283 ~~l--~~-------~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~~  344 (446)
                      ++|  +.       .|.|.+|++++          ++.|+||++|++... ...+.+..||+.+|.++.|..
T Consensus       289 ~~l~~~~~gl~~~~~G~i~vd~~~~----------t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~~  350 (482)
T 1ojt_A          289 KLISAEKAGVAVTDRGFIEVDKQMR----------TNVPHIYAIGDIVGQPMLAHKAVHEGHVAAENCAGHK  350 (482)
T ss_dssp             GGTTGGGTTCCCCTTSCCCCCTTSB----------CSSTTEEECGGGTCSSCCHHHHHHHHHHHHHHHTTCC
T ss_pred             CCCChhhcCceeCCCCCEeeCCCcc----------cCCCCEEEEEcccCCCccHHHHHHHHHHHHHHHcCCC
Confidence            874  32       34566665544          558999999998753 446788999999999999853

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.97  E-value=4.8e-31  Score=265.82  Aligned_cols=297  Identities=21%  Similarity=0.225  Sum_probs=193.7

Q ss_pred             CeEEEECcChHHHHHHHHHHHCC-----CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCce-eecCCCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREG-----HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSL-RVNLPRE   76 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g-----~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l-~~~~~~~   76 (446)
                      +||+|||||++||++|..|++.|     ++|+|||+.+.+|  |.......    ++     ....+.+..+ ....|..
T Consensus        31 ~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g--~~~~~~~~----~~-----~~~~~~~~~l~~~~~p~~   99 (463)
T 3s5w_A           31 HDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYR--WHGNTLVS----QS-----ELQISFLKDLVSLRNPTS   99 (463)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCC--SSGGGCCS----SC-----BCSSCTTSSSSTTTCTTC
T ss_pred             CCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCC--CcCCCCCC----CC-----cCCcchhhccccccCCCC
Confidence            48999999999999999999999     9999999999887  44321000    00     0000011111 0111222


Q ss_pred             CcccCCCCCCcCC-CCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcC--CCce--EEEEEeCCCceE
Q 013303           77 LMGFQAYPFVARN-YEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE--SNKW--KVKSRKKDDVVE  151 (446)
Q Consensus        77 ~~~~~d~~~~~~~-~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~--~~~~--~v~~~~~~~~~~  151 (446)
                      .+.|.++...... .+.......|+++.++.+|+..++++++..  ++++++|++|++..  ++.|  +|++.++.++..
T Consensus       100 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~  177 (463)
T 3s5w_A          100 PYSFVNYLHKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQ--SRYGEEVLRIEPMLSAGQVEALRVISRNADGEEL  177 (463)
T ss_dssp             TTSHHHHHHHTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTT--EEESEEEEEEEEEEETTEEEEEEEEEEETTSCEE
T ss_pred             CCChhHhhhhcCceeecccccCCCCCHHHHHHHHHHHHHHcCCe--EEeCCEEEEEEEecCCCceEEEEEEEecCCCceE
Confidence            2222111000000 000011346788999999999999999877  99999999998762  1455  666666655556


Q ss_pred             EEEEcEEEEccCCCCCCccCCCCCCCCCCc--cEEEeeecCC-CCCC-----CCCEEEEEecCCcHHHHHHHHhcc--CC
Q 013303          152 EETFDAVVVCNGHFSVPRLAQVPGIDSWPG--KQMHSHNYRI-PNPF-----QDQVVILIGHYASGLDIKRDLAGF--AK  221 (446)
Q Consensus       152 ~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g--~~~hs~~~~~-~~~~-----~~k~VvVVG~G~sg~eia~~l~~~--~~  221 (446)
                      ++.||+||+|||  +.|.+|..  ++.+.+  .++|+..+.. ...+     ++++|+|||+|.+|+|+|..|++.  +.
T Consensus       178 ~~~~d~lVlAtG--~~p~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~sg~e~a~~l~~~~~~~  253 (463)
T 3s5w_A          178 VRTTRALVVSPG--GTPRIPQV--FRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSV  253 (463)
T ss_dssp             EEEESEEEECCC--CEECCCGG--GGGGTTCTTEEEGGGHHHHHCC-------CEEEEEECCSHHHHHHHHHHHHHCTTE
T ss_pred             EEEeCEEEECCC--CCCCCcch--hhhcCCCCcEEECHHHHhhHHHhhhcccCCCeEEEECCCHhHHHHHHHHHhcCCCC
Confidence            899999999999  67777762  334445  6889887754 2334     689999999999999999999998  99


Q ss_pred             EEEEEEecCCc------------------------------cccccCC---------------------------CCCCe
Q 013303          222 EVHIASRSVAD------------------------------ETHEKQP---------------------------GYDNM  244 (446)
Q Consensus       222 ~V~l~~r~~~~------------------------------~~~~~~~---------------------------~~~~v  244 (446)
                      +|+++.|++..                              ..+....                           ....+
T Consensus       254 ~Vt~v~r~~~~~p~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i  333 (463)
T 3s5w_A          254 QADMILRASALKPADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDLIERIYGVFYRQKVSGIPRHAF  333 (463)
T ss_dssp             EEEEECSSSSCCBCCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCCCCSEE
T ss_pred             eEEEEEeCCCCcCccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhccCCCcCCHHHHHHHHHHHHHHHhcCCCCeEE
Confidence            99999998730                              0001111                           11235


Q ss_pred             eeccceeEEccCCc---EEec---CCcE--EeecEEEEecCccCC--CCCCCCC----CeeeeCCCCcccccccccCCCC
Q 013303          245 WLHSMVERANEDGT---VVFR---NGRV--VSADVIMHCTGYKYN--YPFLETN----GIVTVDDNRVGPLYKHVFPPVL  310 (446)
Q Consensus       245 ~~~~~v~~i~~~~~---v~~~---dG~~--~~~D~vi~atG~~~~--~~~l~~~----g~i~~~~~~~~~l~~~~~~~~~  310 (446)
                      .....|+++..++.   +.+.   +|+.  +++|.||+|||++|+  .++|...    |.+.+|+..+...     ....
T Consensus       334 ~~~~~v~~v~~~~~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~~~~~~l~~l~~~~g~i~v~~~~~~~~-----~~~~  408 (463)
T 3s5w_A          334 RCMTTVERATATAQGIELALRDAGSGELSVETYDAVILATGYERQLHRQLLEPLAEYLGDHEIGRDYRLQT-----DERC  408 (463)
T ss_dssp             ETTEEEEEEEEETTEEEEEEEETTTCCEEEEEESEEEECCCEECCC-CTTTGGGGGGBC--CCCTTSBCCB-----CTTB
T ss_pred             EeCCEEEEEEecCCEEEEEEEEcCCCCeEEEECCEEEEeeCCCCCCccchhHHHHHHhCCcccCccccccc-----CCCC
Confidence            55667888865432   5665   7765  889999999999999  6776532    4566776654211     1122


Q ss_pred             CCCeEEecCCC
Q 013303          311 APGLSFVGIPQ  321 (446)
Q Consensus       311 ~p~l~~iG~~~  321 (446)
                      .|+||++|++.
T Consensus       409 ~~~Ifa~G~~~  419 (463)
T 3s5w_A          409 KVAIYAQGFSQ  419 (463)
T ss_dssp             CSEEEESSCCH
T ss_pred             CCeEEEcCCCc
Confidence            57899999864

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=99.97  E-value=1.4e-32  Score=275.50  Aligned_cols=288  Identities=17%  Similarity=0.246  Sum_probs=194.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCcc-CceeecCCCCCccc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLY-KSLRVNLPRELMGF   80 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y-~~l~~~~~~~~~~~   80 (446)
                      ++||+|||||++|+++|..|++.|++|+|||++ .+||+|.+.        ||.|++.++.+..+ ..++.+.+      
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~--------gciP~k~l~~~a~~~~~~~~~~~------   68 (450)
T 1ges_A            4 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCVNV--------GCVPKKVMWHAAQIREAIHMYGP------   68 (450)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHHHH--------SHHHHHHHHHHHHHHHHHHTTGG------
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCC-CCCCccccc--------CccChHHHHHHHHHHHHHHHHHH------
Confidence            479999999999999999999999999999997 799999864        56665433322211 10100000      


Q ss_pred             CCCCCCcCCCCCCCCCCCCCCHHHHHHHH-----------HHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCc
Q 013303           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYL-----------QNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV  149 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl-----------~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~  149 (446)
                       .|.+...        ....+..++.++.           ....++.+++  +..++ +..++     .++|.+ ++   
T Consensus        69 -~~g~~~~--------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g~-~~~i~-----~~~v~~-~g---  127 (450)
T 1ges_A           69 -DYGFDTT--------INKFNWETLIASRTAYIDRIHTSYENVLGKNNVD--VIKGF-ARFVD-----AKTLEV-NG---  127 (450)
T ss_dssp             -GGTEEEE--------EEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEESC-CEEEE-----TTEEEE-TT---
T ss_pred             -hcCccCC--------CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEeE-EEEec-----CCEEEE-CC---
Confidence             0100000        0001223333332           3333455665  55553 34443     245655 22   


Q ss_pred             eEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303          150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS  229 (446)
Q Consensus       150 ~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~  229 (446)
                       .++.||+||+|||  +.|..|++||.+.    ..++.++..... .+++|+|||+|.+|+|+|..|++.|.+|+++.+.
T Consensus       128 -~~~~~d~lviAtG--s~p~~p~i~g~~~----~~~~~~~~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~  199 (450)
T 1ges_A          128 -ETITADHILIATG--GRPSHPDIPGVEY----GIDSDGFFALPA-LPERVAVVGAGYIGVELGGVINGLGAKTHLFEMF  199 (450)
T ss_dssp             -EEEEEEEEEECCC--EEECCCCSTTGGG----SBCHHHHHHCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             -EEEEeCEEEECCC--CCCCCCCCCCccc----eecHHHhhhhhh-cCCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeC
Confidence             3789999999999  8899999998742    334444322222 3689999999999999999999999999999987


Q ss_pred             CC-----ccc----c-ccCCCC-CCeeeccceeEEccC--C--cEEecCCcEEeecEEEEecCccCCCCCC---------
Q 013303          230 VA-----DET----H-EKQPGY-DNMWLHSMVERANED--G--TVVFRNGRVVSADVIMHCTGYKYNYPFL---------  285 (446)
Q Consensus       230 ~~-----~~~----~-~~~~~~-~~v~~~~~v~~i~~~--~--~v~~~dG~~~~~D~vi~atG~~~~~~~l---------  285 (446)
                      +.     +..    + +.+.+. .++..+..|.++..+  +  .|.+.||+++++|.||+|+|++|+.++|         
T Consensus       200 ~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~~~l~~~~~gl~~  279 (450)
T 1ges_A          200 DAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPANDNINLEAAGVKT  279 (450)
T ss_dssp             SSSSTTSCHHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESCTTSCHHHHTCCB
T ss_pred             CchhhhhhHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCCcCCCCCCchhcCceE
Confidence            64     100    1 111111 255667788888754  2  3778899999999999999999999854         


Q ss_pred             CCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCC
Q 013303          286 ETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       286 ~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~  343 (446)
                      ++.|.|.+|+.++          ++.|+||++|++.. ....+.+..||+.+|.++.|.
T Consensus       280 ~~~g~i~vd~~~~----------t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~  328 (450)
T 1ges_A          280 NEKGYIVVDKYQN----------TNIEGIYAVGDNTGAVELTPVAVAAGRRLSERLFNN  328 (450)
T ss_dssp             CTTSCBCCCTTSB----------CSSTTEEECSGGGTSCCCHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCCEeECCCCc----------cCCCCEEEEeccCCCCccHHHHHHHHHHHHHHHcCC
Confidence            2345566666654          55899999999864 345678899999999999874

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=99.97  E-value=6.7e-32  Score=279.80  Aligned_cols=277  Identities=17%  Similarity=0.295  Sum_probs=199.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG   79 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~   79 (446)
                      +++|+|||||+|||+||..|++.  |.+|+|||+++.+|  |...                                  +
T Consensus        36 ~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~--~~~~----------------------------------~   79 (588)
T 3ics_A           36 SRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYIS--FANC----------------------------------G   79 (588)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSS--BCGG----------------------------------G
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCcc--ccCC----------------------------------C
Confidence            57999999999999999999998  89999999987654  1100                                  0


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEE
Q 013303           80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAV  158 (446)
Q Consensus        80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~V  158 (446)
                      +   |+...       ....+....+..++..+++++++.  ++++++|+.+++.. .  ++.+.+. .+...++.||+|
T Consensus        80 l---p~~~~-------g~~~~~~~~~~~~~~~~~~~~gi~--v~~~~~V~~id~~~-~--~v~v~~~~~g~~~~~~~d~l  144 (588)
T 3ics_A           80 L---PYYIG-------GVITERQKLLVQTVERMSKRFNLD--IRVLSEVVKINKEE-K--TITIKNVTTNETYNEAYDVL  144 (588)
T ss_dssp             H---HHHHT-------TSSCCGGGGBSSCHHHHHHHTTCE--EECSEEEEEEETTT-T--EEEEEETTTCCEEEEECSEE
T ss_pred             C---chhhc-------CcCCChHHhhccCHHHHHHhcCcE--EEECCEEEEEECCC-C--EEEEeecCCCCEEEEeCCEE
Confidence            0   00000       000011223456678888889988  89999999998755 3  4444432 234457899999


Q ss_pred             EEccCCCCCCccCCCCCCCCCCccEEEeeecCCCC-------CCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN-------PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       159 VvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~-------~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      |+|||  +.|..|++||.+...+ ++++..+.+..       ...+++|+|||+|.+|+|+|..|++.+.+|+++.+.+.
T Consensus       145 viAtG--~~p~~p~i~G~~~~~~-v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  221 (588)
T 3ics_A          145 ILSPG--AKPIVPSIPGIEEAKA-LFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQ  221 (588)
T ss_dssp             EECCC--EEECCCCCTTTTTCTT-EEECSSHHHHHHHHHHHHHHCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             EECCC--CCCCCCCCCCcccCCC-eEEeCCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCc
Confidence            99999  8999999999844333 44433322211       13579999999999999999999999999999998764


Q ss_pred             c-----c----cc-ccCCCC-CCeeeccceeEEccC-CcEEecCCcEEeecEEEEecCccCCCCCCC-------CCCeee
Q 013303          232 D-----E----TH-EKQPGY-DNMWLHSMVERANED-GTVVFRNGRVVSADVIMHCTGYKYNYPFLE-------TNGIVT  292 (446)
Q Consensus       232 ~-----~----~~-~~~~~~-~~v~~~~~v~~i~~~-~~v~~~dG~~~~~D~vi~atG~~~~~~~l~-------~~g~i~  292 (446)
                      .     .    .+ +.+.+. .++.....|.++..+ +.|.+.||+++++|.||+|||+.|+.++++       +.|.|.
T Consensus       222 ~l~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~l~~~g~~~~~~g~i~  301 (588)
T 3ics_A          222 VMPPIDYEMAAYVHEHMKNHDVELVFEDGVDALEENGAVVRLKSGSVIQTDMLILAIGVQPESSLAKGAGLALGVRGTIK  301 (588)
T ss_dssp             SCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEGGGTEEEETTSCEEECSEEEECSCEEECCHHHHHTTCCBCGGGCBC
T ss_pred             ccccCCHHHHHHHHHHHHHcCCEEEECCeEEEEecCCCEEEECCCCEEEcCEEEEccCCCCChHHHHhcCceEcCCCCEE
Confidence            0     0    11 111112 255667789998753 348999999999999999999999987653       345566


Q ss_pred             eCCCCcccccccccCCCCCCCeEEecCCCc-----------cCchhHHHHHHHHHHHHHcC
Q 013303          293 VDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-----------VIPFPFFELQSKWIASVLSG  342 (446)
Q Consensus       293 ~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-----------~~~~~~~~~qa~~~a~~l~g  342 (446)
                      +|+..+          ++.|+||++|++..           ....+.+..||+.+|+++.|
T Consensus       302 vd~~~~----------t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g  352 (588)
T 3ics_A          302 VNEKFQ----------TSDPHIYAIGDAIEVKDFVTETETMIPLAWPANRQGRMLADIIHG  352 (588)
T ss_dssp             CCTTSB----------CSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTT
T ss_pred             ECCccc----------cCCCCEEEeeeeeecccccCCcccccccHHHHHHHHHHHHHHhcC
Confidence            666555          55899999998762           12446789999999999998

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=99.97  E-value=3.4e-32  Score=275.64  Aligned_cols=297  Identities=17%  Similarity=0.217  Sum_probs=197.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEee--------CCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEK--------GEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNL   73 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~--------~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~   73 (446)
                      .+||+||||||||++||..|++.|++|+|||+        ...+||+|.+.        ||.|++.+..+..+.....+ 
T Consensus         6 ~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~--------gciPsk~l~~~~~~~~~~~~-   76 (488)
T 3dgz_A            6 SFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNV--------GCIPKKLMHQAALLGGMIRD-   76 (488)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHHH--------SHHHHHHHHHHHHHHHHHHH-
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeeccc--------CCcccHHHHHHHHHHHHHHH-
Confidence            47999999999999999999999999999997        56799999875        67776544332221111110 


Q ss_pred             CCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHH-----------hCCCCcEEeCeEEEEEEEcCCCceEEE
Q 013303           74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-----------FGVDQVVRLHTEVLNARLVESNKWKVK  142 (446)
Q Consensus        74 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~-----------~~l~~~i~~~~~V~~v~~~~~~~~~v~  142 (446)
                            ...|.+...       ....+...++.++..++.++           .+++  + +..++..+     +.+.+.
T Consensus        77 ------~~~~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~-i~g~~~~~-----~~~~v~  135 (488)
T 3dgz_A           77 ------AHHYGWEVA-------QPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVK--Y-FNIKASFV-----DEHTVR  135 (488)
T ss_dssp             ------HHHTTCCCC-------SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--E-ECCEEEES-----SSSEEE
T ss_pred             ------HHhcCcccC-------CcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--E-EEEEEEEc-----cCCeEE
Confidence                  111111110       12234455666665544432           3433  2 23333332     223444


Q ss_pred             EEeCCCceEEEEEcEEEEccCCCCCCccCC-CCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCC
Q 013303          143 SRKKDDVVEEETFDAVVVCNGHFSVPRLAQ-VPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAK  221 (446)
Q Consensus       143 ~~~~~~~~~~~~~d~VVvAtG~~s~p~~p~-i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~  221 (446)
                      +...+++..++.||+||||||  +.|..|+ +||.+.   ..+++.++.... ..+++|+|||+|.+|+|+|..|++.+.
T Consensus       136 v~~~~g~~~~~~~d~lViATG--s~p~~p~~i~G~~~---~~~~~~~~~~~~-~~~~~vvViGgG~ig~E~A~~l~~~g~  209 (488)
T 3dgz_A          136 GVDKGGKATLLSAEHIVIATG--GRPRYPTQVKGALE---YGITSDDIFWLK-ESPGKTLVVGASYVALECAGFLTGIGL  209 (488)
T ss_dssp             EECTTSCEEEEEEEEEEECCC--EEECCCSSCBTHHH---HCBCHHHHTTCS-SCCCSEEEECCSHHHHHHHHHHHHTTC
T ss_pred             EEeCCCceEEEECCEEEEcCC--CCCCCCCCCCCccc---ccCcHHHHHhhh-hcCCeEEEECCCHHHHHHHHHHHHcCC
Confidence            444444456899999999999  8999998 999753   234444444332 246789999999999999999999999


Q ss_pred             EEEEEEecCC----ccc----c-ccCCCC-CCeeeccceeEEcc--CCc--EEecC---Cc--EEeecEEEEecCccCCC
Q 013303          222 EVHIASRSVA----DET----H-EKQPGY-DNMWLHSMVERANE--DGT--VVFRN---GR--VVSADVIMHCTGYKYNY  282 (446)
Q Consensus       222 ~V~l~~r~~~----~~~----~-~~~~~~-~~v~~~~~v~~i~~--~~~--v~~~d---G~--~~~~D~vi~atG~~~~~  282 (446)
                      +|+++.+...    +..    + +.+.+. -++.....+.++..  ++.  +.+.+   |+  ++++|.||+|+|++|+.
T Consensus       210 ~Vtlv~~~~~l~~~d~~~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~  289 (488)
T 3dgz_A          210 DTTVMMRSIPLRGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPET  289 (488)
T ss_dssp             CEEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEESC
T ss_pred             ceEEEEcCcccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCccc
Confidence            9999998643    111    1 111112 25556667777754  222  55655   55  46899999999999999


Q ss_pred             CCCC----------CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc--cCchhHHHHHHHHHHHHHcCCC
Q 013303          283 PFLE----------TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK--VIPFPFFELQSKWIASVLSGRI  344 (446)
Q Consensus       283 ~~l~----------~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~--~~~~~~~~~qa~~~a~~l~g~~  344 (446)
                      ++|.          +.|.|.+|++++          ++.|+||++|++..  ....+.+..||+.+|.++.|..
T Consensus       290 ~~l~l~~~g~~~~~~~G~i~vd~~~~----------t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~  353 (488)
T 3dgz_A          290 RTLNLEKAGISTNPKNQKIIVDAQEA----------TSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFGKS  353 (488)
T ss_dssp             GGGTGGGGTCCBCSSSCCBCCCTTSB----------CSSTTEEECGGGBTTCCCCHHHHHHHHHHHHHHHHSCC
T ss_pred             CcCCccccCcEecCCCCeEeECCCCc----------cCCCCEEEeEEecCCCCcchhHHHHHHHHHHHHHcCCC
Confidence            8742          345566665554          55899999999852  3445788999999999998853

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=99.97  E-value=1.1e-31  Score=277.14  Aligned_cols=278  Identities=17%  Similarity=0.216  Sum_probs=196.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG   79 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~   79 (446)
                      |++|+|||||+|||++|..|++.  +.+|+|||+++.++.....                 ++  .+             
T Consensus         1 M~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~~-----------------l~--~~-------------   48 (565)
T 3ntd_A            1 MKKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCG-----------------LP--YH-------------   48 (565)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGG-----------------HH--HH-------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccccC-----------------ch--HH-------------
Confidence            47999999999999999999998  7899999998765411000                 00  00             


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEE
Q 013303           80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAV  158 (446)
Q Consensus        80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~V  158 (446)
                      +.              ....+....+.+++..+++++++.  ++++++|+++++.. .  .+++.+. .+...++.||+|
T Consensus        49 ~~--------------~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~V~~id~~~-~--~v~~~~~~~g~~~~~~~d~l  109 (565)
T 3ntd_A           49 IS--------------GEIAQRSALVLQTPESFKARFNVE--VRVKHEVVAIDRAA-K--LVTVRRLLDGSEYQESYDTL  109 (565)
T ss_dssp             HT--------------SSSCCGGGGBCCCHHHHHHHHCCE--EETTEEEEEEETTT-T--EEEEEETTTCCEEEEECSEE
T ss_pred             hc--------------CCcCChHHhhccCHHHHHHhcCcE--EEECCEEEEEECCC-C--EEEEEecCCCCeEEEECCEE
Confidence            00              000011233445677778888988  88999999998755 3  4444442 233457899999


Q ss_pred             EEccCCCCCCccCCCCCCCCCCccEEEeeecCCC-------CCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP-------NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       159 VvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~-------~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      |+|||  +.|+.|++||.+..  .+.+.....+.       ....+++|+|||+|.+|+|+|..|++.|.+|+++.+.+.
T Consensus       110 viAtG--~~p~~p~ipG~~~~--~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  185 (565)
T 3ntd_A          110 LLSPG--AAPIVPPIPGVDNP--LTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQ  185 (565)
T ss_dssp             EECCC--EEECCCCCTTCCST--TEECCSSHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             EECCC--CCCCCCCCCCCCCC--CEEEeCCHHHHHHHHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCc
Confidence            99999  79999999998642  23333222111       114578999999999999999999999999999999875


Q ss_pred             c-----cc----c-ccCCCC-CCeeeccceeEEcc--------------------CCc--EEecCCcEEeecEEEEecCc
Q 013303          232 D-----ET----H-EKQPGY-DNMWLHSMVERANE--------------------DGT--VVFRNGRVVSADVIMHCTGY  278 (446)
Q Consensus       232 ~-----~~----~-~~~~~~-~~v~~~~~v~~i~~--------------------~~~--v~~~dG~~~~~D~vi~atG~  278 (446)
                      .     ..    + +.+.+. .++.....|.++..                    ++.  +.+.||+++++|.||+|||+
T Consensus       186 ~l~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~  265 (565)
T 3ntd_A          186 VMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGV  265 (565)
T ss_dssp             SCTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCE
T ss_pred             cchhcCHHHHHHHHHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCC
Confidence            1     11    1 111112 25566678888865                    222  67789999999999999999


Q ss_pred             cCCCCCC-------CCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc------c-----CchhHHHHHHHHHHHHH
Q 013303          279 KYNYPFL-------ETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK------V-----IPFPFFELQSKWIASVL  340 (446)
Q Consensus       279 ~~~~~~l-------~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~------~-----~~~~~~~~qa~~~a~~l  340 (446)
                      +|+.+++       ++.|.|.+|+.++          ++.|+||++|++..      +     ...+.+..||+.+|+++
T Consensus       266 ~p~~~l~~~~g~~~~~~g~i~vd~~~~----------t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i  335 (565)
T 3ntd_A          266 RPETQLARDAGLAIGELGGIKVNAMMQ----------TSDPAIYAVGDAVEEQDFVTGQACLVPLAGPANRQGRMAADNM  335 (565)
T ss_dssp             EECCHHHHHHTCCBCTTSSBCCCTTCB----------CSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHhCCcccCCCCCEEECCCcc----------cCCCCEEEeeeeEeeccccCCceeecccHHHHHHHHHHHHHHh
Confidence            9998764       3445666666555          55899999998752      1     23567899999999999


Q ss_pred             cCCC
Q 013303          341 SGRI  344 (446)
Q Consensus       341 ~g~~  344 (446)
                      .|+.
T Consensus       336 ~g~~  339 (565)
T 3ntd_A          336 FGRE  339 (565)
T ss_dssp             TTCC
T ss_pred             cCCC
Confidence            9864

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=99.97  E-value=7e-32  Score=269.17  Aligned_cols=279  Identities=15%  Similarity=0.161  Sum_probs=191.2

Q ss_pred             CeEEEECcChHHHHHHHHHHHCC--CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCccc
Q 013303            3 RHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g--~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~   80 (446)
                      .+|+|||||+||++||..|++.|  .+|+|||+++..++....                 ++     .+.          
T Consensus         1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~-----------------l~-----~~~----------   48 (437)
T 4eqs_A            1 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCA-----------------LP-----YVI----------   48 (437)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGG-----------------HH-----HHH----------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcch-----------------hH-----HHH----------
Confidence            37999999999999999999988  579999997654321100                 00     000          


Q ss_pred             CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCC-CceEEEEEcEEE
Q 013303           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVV  159 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~-~~~~~~~~d~VV  159 (446)
                      .......        ...+...      ..++.+++++.  ++.+++|+.|+...   ..+++.... ++..++.||+||
T Consensus        49 ~~~~~~~--------~~~~~~~------~~~~~~~~~i~--~~~~~~V~~id~~~---~~~~~~~~~~~~~~~~~yd~lV  109 (437)
T 4eqs_A           49 GEVVEDR--------RYALAYT------PEKFYDRKQIT--VKTYHEVIAINDER---QTVSVLNRKTNEQFEESYDKLI  109 (437)
T ss_dssp             TTSSCCG--------GGTBCCC------HHHHHHHHCCE--EEETEEEEEEETTT---TEEEEEETTTTEEEEEECSEEE
T ss_pred             cCCccch--------hhhhhcC------HHHHHHhcCCE--EEeCCeEEEEEccC---cEEEEEeccCCceEEEEcCEEE
Confidence            0000000        0000000      12345667887  88899999998654   455555443 355678999999


Q ss_pred             EccCCCCCCccCCCCCCCCCCccEEEeeec-CCC-CCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC-----c
Q 013303          160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNY-RIP-NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-----D  232 (446)
Q Consensus       160 vAtG~~s~p~~p~i~G~~~~~g~~~hs~~~-~~~-~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~-----~  232 (446)
                      ||||  +.|+.|+++|...+..+.+..... +.. ...++++|+|||+|.+|+|+|..+++.+.+|+++++.+.     +
T Consensus       110 IATG--s~p~~p~i~g~~~~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~~d  187 (437)
T 4eqs_A          110 LSPG--ASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMD  187 (437)
T ss_dssp             ECCC--EEECCCCCCCTTEECCSSHHHHHHHHHHHHHHTCCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTTSC
T ss_pred             ECCC--CccccccccCceEEeeccHHHHHHHHHhhhccCCcEEEEECCccchhhhHHHHHhcCCcceeeeeecccccccc
Confidence            9999  889999998865432221111100 000 012468999999999999999999999999999999875     1


Q ss_pred             ccc-----ccCCCC-CCeeeccceeEEccCCcEEecCCcEEeecEEEEecCccCCCCCCC-------CCCeeeeCCCCcc
Q 013303          233 ETH-----EKQPGY-DNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLE-------TNGIVTVDDNRVG  299 (446)
Q Consensus       233 ~~~-----~~~~~~-~~v~~~~~v~~i~~~~~v~~~dG~~~~~D~vi~atG~~~~~~~l~-------~~g~i~~~~~~~~  299 (446)
                      ..+     +.+.+. -++..+..|++++.+ .+.+++|+++++|.||+|+|++|+..+++       +.|.|.+|++++ 
T Consensus       188 ~~~~~~~~~~l~~~gV~i~~~~~v~~~~~~-~v~~~~g~~~~~D~vl~a~G~~Pn~~~~~~~gl~~~~~G~I~vd~~~~-  265 (437)
T 4eqs_A          188 ADMNQPILDELDKREIPYRLNEEINAINGN-EITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFE-  265 (437)
T ss_dssp             GGGGHHHHHHHHHTTCCEEESCCEEEEETT-EEEETTSCEEECSEEEECCCEEESCGGGTTSSCCCCTTSCEECCTTCB-
T ss_pred             chhHHHHHHHhhccceEEEeccEEEEecCC-eeeecCCeEEeeeeEEEEeceecCcHHHHhhhhhhccCCcEecCCCcc-
Confidence            111     111112 367778889999765 49999999999999999999999988764       345566666655 


Q ss_pred             cccccccCCCCCCCeEEecCCCcc-----------CchhHHHHHHHHHHHHHcCCCC
Q 013303          300 PLYKHVFPPVLAPGLSFVGIPQKV-----------IPFPFFELQSKWIASVLSGRIV  345 (446)
Q Consensus       300 ~l~~~~~~~~~~p~l~~iG~~~~~-----------~~~~~~~~qa~~~a~~l~g~~~  345 (446)
                               ++.|+||++|++...           ...+.+..||+.+|+++.|...
T Consensus       266 ---------Ts~p~IyA~GDva~~~~~~~~~~~~~~~a~~A~~~g~~~a~ni~g~~~  313 (437)
T 4eqs_A          266 ---------TNVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDT  313 (437)
T ss_dssp             ---------CSSTTEEECGGGEEEEBSSSSSEECCCSHHHHHHHHHHHHHHHHSCTT
T ss_pred             ---------CCCCCEEEEEEccCcccccCCccccchhHHHHHHHHHHHHHHHcCCCC
Confidence                     569999999987532           2346678999999999998743

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.8e-32  Score=273.24  Aligned_cols=296  Identities=17%  Similarity=0.217  Sum_probs=193.4

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCcc-CceeecCCCCCcccC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLY-KSLRVNLPRELMGFQ   81 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y-~~l~~~~~~~~~~~~   81 (446)
                      +||+|||||++|+++|..|++.|++|+|||++ .+||+|.+.        ||.|++.+..+... ..++ +..  .+++.
T Consensus        12 ~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~n~--------gciP~k~l~~~~~~~~~~~-~~~--~~g~~   79 (479)
T 2hqm_A           12 YDYLVIGGGSGGVASARRAASYGAKTLLVEAK-ALGGTCVNV--------GCVPKKVMWYASDLATRVS-HAN--EYGLY   79 (479)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTSCCEEEEESS-CTTHHHHHH--------SHHHHHHHHHHHHHHHHHT-TTT--TTTBS
T ss_pred             CCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCC-CcCCcCccc--------CcHHHHHHHHHHHHHHHHH-hHH--hcCcc
Confidence            69999999999999999999999999999997 799999864        55554433221111 1110 000  01111


Q ss_pred             CC-CCCcCCCCCCCCCCCCCCHHHHHHH-----------HHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCc
Q 013303           82 AY-PFVARNYEGSVDLRRYPGHEEVLRY-----------LQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV  149 (446)
Q Consensus        82 d~-~~~~~~~~~~~~~~~~~~~~~v~~y-----------l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~  149 (446)
                      .. ++..        .........+.++           +....++.++.  +..+ ++..++  . ..+.|...+  +.
T Consensus        80 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g-~~~~i~--~-~~~~v~~~~--g~  143 (479)
T 2hqm_A           80 QNLPLDK--------EHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVD--VVFG-WARFNK--D-GNVEVQKRD--NT  143 (479)
T ss_dssp             TTSCCSG--------GGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEE--EEEE-EEEECT--T-SCEEEEESS--SC
T ss_pred             ccccccc--------ccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEe-EEEEee--C-CEEEEEeCC--Cc
Confidence            00 0000        0011122333332           33334445554  4444 344442  2 445555433  22


Q ss_pred             eEEEEEcEEEEccCCCCCCccC-CCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEe
Q 013303          150 VEEETFDAVVVCNGHFSVPRLA-QVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR  228 (446)
Q Consensus       150 ~~~~~~d~VVvAtG~~s~p~~p-~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r  228 (446)
                      ..++.||+||+|||  +.|..| ++||.+.    .+++.++.... ..+++|+|||+|.+|+|+|..|++.|.+|+++.+
T Consensus       144 ~~~~~~d~lviAtG--s~p~~p~~i~g~~~----~~~~~~~~~l~-~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~  216 (479)
T 2hqm_A          144 TEVYSANHILVATG--GKAIFPENIPGFEL----GTDSDGFFRLE-EQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIR  216 (479)
T ss_dssp             CEEEEEEEEEECCC--EEECCCTTSTTGGG----SBCHHHHHHCS-SCCSEEEEECSSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             EEEEEeCEEEEcCC--CCCCCCCCCCCccc----ccchHHHhccc-ccCCeEEEECCCHHHHHHHHHHHHcCCceEEEEe
Confidence            34689999999999  889999 8998742    23443332222 2478999999999999999999999999999999


Q ss_pred             cCC-----ccc----c-ccCCCC-CCeeeccceeEEccC--C---cEEecCC-cEEeecEEEEecCccCCCCC-CCC---
Q 013303          229 SVA-----DET----H-EKQPGY-DNMWLHSMVERANED--G---TVVFRNG-RVVSADVIMHCTGYKYNYPF-LET---  287 (446)
Q Consensus       229 ~~~-----~~~----~-~~~~~~-~~v~~~~~v~~i~~~--~---~v~~~dG-~~~~~D~vi~atG~~~~~~~-l~~---  287 (446)
                      .+.     +..    + +.+.+. .++..+..|.++..+  +   .|.++|| +++++|.||+|+|++|+..+ ++.   
T Consensus       217 ~~~~l~~~d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~l~l~~~gl  296 (479)
T 2hqm_A          217 GETVLRKFDECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGI  296 (479)
T ss_dssp             SSSSCTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECCCSSGGGGTC
T ss_pred             CCccccccCHHHHHHHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCccccChhhcCc
Confidence            864     111    1 111111 256667788888753  3   3778899 78999999999999999855 332   


Q ss_pred             ----CCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCC
Q 013303          288 ----NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       288 ----~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~  343 (446)
                          .|.|.+|+.++          ++.|+||++|++.. ....+.+..||+.+|.++.|.
T Consensus       297 ~~~~~G~i~vd~~~~----------t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~  347 (479)
T 2hqm_A          297 KLNSHDQIIADEYQN----------TNVPNIYSLGDVVGKVELTPVAIAAGRKLSNRLFGP  347 (479)
T ss_dssp             CBCTTSCBCCCTTCB----------CSSTTEEECGGGTTSSCCHHHHHHHHHHHHHHHHSC
T ss_pred             eECCCCCEeECCCCc----------cCCCCEEEEEecCCCcccHHHHHHHHHHHHHHhcCC
Confidence                34555555544          55899999999864 345678899999999999874

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=99.97  E-value=1.1e-31  Score=271.56  Aligned_cols=296  Identities=20%  Similarity=0.212  Sum_probs=196.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeC---C------CcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeec
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG---E------QVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVN   72 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~---~------~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~   72 (446)
                      .+||+||||||||++||..|++.|++|+|||+.   +      .+||+|.+.        ||+|++.+..+..+......
T Consensus         9 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~~~--------gciPsk~l~~~~~~~~~~~~   80 (483)
T 3dgh_A            9 DYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNV--------GCIPKKLMHQASLLGEAVHE   80 (483)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHHHH--------SHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeeccc--------CchhhHHHHHHHHHHHHHHH
Confidence            469999999999999999999999999999942   1      389999875        67766543332211111000


Q ss_pred             CCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHH-----------hCCCCcEEeCeEEEEEEEcCCCceEE
Q 013303           73 LPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-----------FGVDQVVRLHTEVLNARLVESNKWKV  141 (446)
Q Consensus        73 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~-----------~~l~~~i~~~~~V~~v~~~~~~~~~v  141 (446)
                      .       ..|.+...       ....++..++.++...+++.           .++.  + +...+..++.   ..+.|
T Consensus        81 ~-------~~~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~-~~g~a~~~~~---~~v~v  140 (483)
T 3dgh_A           81 A-------AAYGWNVD-------DKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVE--Y-INGLGSFVDS---HTLLA  140 (483)
T ss_dssp             H-------HHTTBCCC-------CCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--E-ECSEEEEEET---TEEEE
T ss_pred             H-------HhcCcccC-------CcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--E-EEeEEEEccC---CEEEE
Confidence            0       01111110       11233456666666555443           2333  2 2333333321   33444


Q ss_pred             EEEeCCCceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCC
Q 013303          142 KSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAK  221 (446)
Q Consensus       142 ~~~~~~~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~  221 (446)
                      ..  .++. .++.||+||||||  +.|+.|++||.+.+   .+++.++.... ..+++|+|||+|.+|+|+|..|++.+.
T Consensus       141 ~~--~~g~-~~~~~d~lviATG--s~p~~p~i~G~~~~---~~~~~~~~~~~-~~~~~vvViGgG~~g~E~A~~l~~~g~  211 (483)
T 3dgh_A          141 KL--KSGE-RTITAQTFVIAVG--GRPRYPDIPGAVEY---GITSDDLFSLD-REPGKTLVVGAGYIGLECAGFLKGLGY  211 (483)
T ss_dssp             EC--TTCC-EEEEEEEEEECCC--EEECCCSSTTHHHH---CBCHHHHTTCS-SCCCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             Ee--CCCe-EEEEcCEEEEeCC--CCcCCCCCCCcccc---cCcHHHHhhhh-hcCCcEEEECCCHHHHHHHHHHHHcCC
Confidence            33  2222 5799999999999  89999999997542   34444444332 246899999999999999999999999


Q ss_pred             EEEEEEecCC----cc----cc-ccCCCC-CCeeeccceeEEccC--Cc--EEecCCc-----EEeecEEEEecCccCCC
Q 013303          222 EVHIASRSVA----DE----TH-EKQPGY-DNMWLHSMVERANED--GT--VVFRNGR-----VVSADVIMHCTGYKYNY  282 (446)
Q Consensus       222 ~V~l~~r~~~----~~----~~-~~~~~~-~~v~~~~~v~~i~~~--~~--v~~~dG~-----~~~~D~vi~atG~~~~~  282 (446)
                      +|+++.+...    +.    .+ +.+.+. -++.....|.++..+  +.  |.+.++.     ++++|.||+|+|++|+.
T Consensus       212 ~Vtlv~~~~~l~~~d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~  291 (483)
T 3dgh_A          212 EPTVMVRSIVLRGFDQQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLV  291 (483)
T ss_dssp             EEEEEESSCSSTTSCHHHHHHHHHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEECC
T ss_pred             EEEEEeCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcccccCc
Confidence            9999988532    11    11 111222 256677788888642  22  6777764     68899999999999998


Q ss_pred             CCC--CCC------CeeeeCCCCcccccccccCCCCCCCeEEecCCCc--cCchhHHHHHHHHHHHHHcCCC
Q 013303          283 PFL--ETN------GIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK--VIPFPFFELQSKWIASVLSGRI  344 (446)
Q Consensus       283 ~~l--~~~------g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~--~~~~~~~~~qa~~~a~~l~g~~  344 (446)
                      +++  ...      |.|.+|++.+          ++.|+||++|++..  ....+.+..||+.+|+++.|..
T Consensus       292 ~~l~l~~~gl~~~~G~i~vd~~~~----------t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~  353 (483)
T 3dgh_A          292 DDLNLPNAGVTVQKDKIPVDSQEA----------TNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLYGGS  353 (483)
T ss_dssp             GGGTGGGTTCCCBTTBBCCCTTCB----------CSSTTEEECSTTBTTSCCCHHHHHHHHHHHHHHHHSCC
T ss_pred             CcCCchhcCccccCCEEEECcCCc----------cCCCCEEEEEcccCCCCccHHHHHHHHHHHHHHHcCCC
Confidence            876  222      4566665544          55899999999852  4456788999999999998763

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=99.97  E-value=7.5e-32  Score=272.68  Aligned_cols=296  Identities=17%  Similarity=0.164  Sum_probs=195.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCC-ccCceeecCCCCCccc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF   80 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~-~y~~l~~~~~~~~~~~   80 (446)
                      .+||+|||||++|+++|..|++.|++|+|||+++.+||+|...        ||.|++.++... .|+.+........+.+
T Consensus         5 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~--------g~~psk~l~~~~~~~~~~~~~~~~~gi~~   76 (478)
T 1v59_A            5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNV--------GCIPSKALLNNSHLFHQMHTEAQKRGIDV   76 (478)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHH--------SHHHHHHHHHHHHHHHHHHHTSGGGTEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCcccee--------ccHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence            3699999999999999999999999999999989999999764        555544332211 1222111111000000


Q ss_pred             CCCCCCcCCCCCCCCCCCCCCHHHHH-----------HHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCc
Q 013303           81 QAYPFVARNYEGSVDLRRYPGHEEVL-----------RYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV  149 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~~~v~-----------~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~  149 (446)
                        +  .          ....+..++.           ..+...+++.+++  +++++.+..   +. +.++|.+.++.  
T Consensus        77 --~--~----------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~--~~~g~~~~~---~~-~~v~V~~~~G~--  134 (478)
T 1v59_A           77 --N--G----------DIKINVANFQKAKDDAVKQLTGGIELLFKKNKVT--YYKGNGSFE---DE-TKIRVTPVDGL--  134 (478)
T ss_dssp             --C--S----------CEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEESEEEES---SS-SEEEEECCTTC--
T ss_pred             --C--C----------CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEEEEc---cC-CeEEEEecCCC--
Confidence              0  0          0001122222           2344556667776  777776642   22 45666554331  


Q ss_pred             eEE------EEEcEEEEccCCCCCCccCCCCCCCCCCc-cEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCE
Q 013303          150 VEE------ETFDAVVVCNGHFSVPRLAQVPGIDSWPG-KQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKE  222 (446)
Q Consensus       150 ~~~------~~~d~VVvAtG~~s~p~~p~i~G~~~~~g-~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~  222 (446)
                      ..+      +.||+||+|||  +.|.  .+||.+ +.+ .+.++.+...... .+++|+|||+|.+|+|+|..|++.|.+
T Consensus       135 ~~~~~~~~~i~~d~lViAtG--s~p~--~~~g~~-~~~~~v~~~~~~~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~  208 (478)
T 1v59_A          135 EGTVKEDHILDVKNIIVATG--SEVT--PFPGIE-IDEEKIVSSTGALSLKE-IPKRLTIIGGGIIGLEMGSVYSRLGSK  208 (478)
T ss_dssp             TTCCSSCEEEEEEEEEECCC--EEEC--CCTTCC-CCSSSEECHHHHTTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred             cccccccceEEeCEEEECcC--CCCC--CCCCCC-CCCceEEcHHHHHhhhc-cCceEEEECCCHHHHHHHHHHHHcCCE
Confidence            124      89999999999  5553  456654 333 4666666554433 479999999999999999999999999


Q ss_pred             EEEEEecCCc---------ccc-ccCCCC-CCeeeccceeEEcc--CCc---EEec-----CCcEEeecEEEEecCccCC
Q 013303          223 VHIASRSVAD---------ETH-EKQPGY-DNMWLHSMVERANE--DGT---VVFR-----NGRVVSADVIMHCTGYKYN  281 (446)
Q Consensus       223 V~l~~r~~~~---------~~~-~~~~~~-~~v~~~~~v~~i~~--~~~---v~~~-----dG~~~~~D~vi~atG~~~~  281 (446)
                      |+++.+.+..         ..+ +.+.+. -++.....|.++..  ++.   +.+.     +|+++++|.||+|+|++|+
T Consensus       209 Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~  288 (478)
T 1v59_A          209 VTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPY  288 (478)
T ss_dssp             EEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEEC
T ss_pred             EEEEEeCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcC
Confidence            9999987641         011 111122 25566678888875  432   5565     4567999999999999999


Q ss_pred             CC--CCCC-------CCeeeeCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCC
Q 013303          282 YP--FLET-------NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       282 ~~--~l~~-------~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~  343 (446)
                      .+  ++..       .|.|.+|+.++          ++.|+||++|++... ...+.+..||+.+|+++.|.
T Consensus       289 ~~~l~l~~~g~~~~~~G~i~vd~~~~----------t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~  350 (478)
T 1v59_A          289 IAGLGAEKIGLEVDKRGRLVIDDQFN----------SKFPHIKVVGDVTFGPMLAHKAEEEGIAAVEMLKTG  350 (478)
T ss_dssp             CTTSCTTTTTCCBCTTSCBCCCTTSB----------CSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCchhcCceeCCCCCEeECcCCc----------cCCCCEEEeeccCCCcccHHHHHHHHHHHHHHHcCC
Confidence            88  5543       34455555443          458999999998753 34578899999999999874

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=99.97  E-value=1.3e-31  Score=269.72  Aligned_cols=293  Identities=19%  Similarity=0.214  Sum_probs=196.1

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCC-ccCceeecCCCCCcccC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~-~y~~l~~~~~~~~~~~~   81 (446)
                      +||+|||||+||+++|..|++.|++|+|||+++ +||+|.+.        ||.|++.++.+. .++.++. ..  .+++.
T Consensus         7 ~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~~~~--------g~iP~k~l~~~~~~~~~~~~-~~--~~g~~   74 (464)
T 2eq6_A            7 YDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVCLNV--------GCIPTKALLHAAETLHHLKV-AE--GFGLK   74 (464)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHT--------SHHHHHHHHHHHHHHHHHHH-HG--GGTEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCCCCc--------ChHHHHHHHHHHHHHHHHHh-HH--hcCCC
Confidence            799999999999999999999999999999976 99999864        565554333221 1111110 00  00110


Q ss_pred             CCCCCcCCCCCCCCCCC-CCCHHHHHHH----HHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEc
Q 013303           82 AYPFVARNYEGSVDLRR-YPGHEEVLRY----LQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD  156 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~-~~~~~~v~~y----l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d  156 (446)
                      ..+..        +... +....++.++    +..+.++.+++  +..++.+. ++  .   ++|++. +    .++.||
T Consensus        75 ~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~--~~~g~~~~-~~--~---~~v~v~-g----~~~~~d  133 (464)
T 2eq6_A           75 AKPEL--------DLKKLGGWRDQVVKKLTGGVGTLLKGNGVE--LLRGFARL-VG--P---KEVEVG-G----ERYGAK  133 (464)
T ss_dssp             CCCEE--------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEESCEEE-EE--T---TEEEET-T----EEEEEE
T ss_pred             CCCCc--------CHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEeeeEEE-cc--C---CEEEEc-c----EEEEeC
Confidence            00000        0000 0011222222    34455666776  66665443 32  2   455553 2    378999


Q ss_pred             EEEEccCCCCCCccCC-CCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC----
Q 013303          157 AVVVCNGHFSVPRLAQ-VPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----  231 (446)
Q Consensus       157 ~VVvAtG~~s~p~~p~-i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~----  231 (446)
                      +||+|||  +.|+.|+ ++| +   +.++++.++.....+.+++|+|||+|.+|+|+|..|++.|.+|+++.+.+.    
T Consensus       134 ~lViATG--s~p~~p~gi~~-~---~~v~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~  207 (464)
T 2eq6_A          134 SLILATG--SEPLELKGFPF-G---EDVWDSTRALKVEEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQ  207 (464)
T ss_dssp             EEEECCC--EEECCBTTBCC-S---SSEECHHHHTCGGGCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT
T ss_pred             EEEEcCC--CCCCCCCCCCC-C---CcEEcHHHHHhhhhhcCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccc
Confidence            9999999  7888886 666 2   246676666555444579999999999999999999999999999998764    


Q ss_pred             -cc----cc-ccCCCC-CCeeeccceeEEccCCc---EEec-C--Cc--EEeecEEEEecCccCCCCCC---------CC
Q 013303          232 -DE----TH-EKQPGY-DNMWLHSMVERANEDGT---VVFR-N--GR--VVSADVIMHCTGYKYNYPFL---------ET  287 (446)
Q Consensus       232 -~~----~~-~~~~~~-~~v~~~~~v~~i~~~~~---v~~~-d--G~--~~~~D~vi~atG~~~~~~~l---------~~  287 (446)
                       +.    .+ +.+.+. -++.....|.++..++.   +.+. +  |+  ++++|.||+|+|++|+.+++         ++
T Consensus       208 ~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~  287 (464)
T 2eq6_A          208 GDPETAALLRRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDE  287 (464)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCEEESCTTSSHHHHTCCBCT
T ss_pred             cCHHHHHHHHHHHHhcCCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCcccCCCCCChhhcCceecC
Confidence             11    11 111112 25566678888875432   5665 7  87  78999999999999999874         23


Q ss_pred             CCeeeeCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCCC
Q 013303          288 NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGRI  344 (446)
Q Consensus       288 ~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~~  344 (446)
                      .|.|.+|+..+          ++.|+||++|++... ...+.+..||+.+|.++.|..
T Consensus       288 ~G~i~vd~~~~----------t~~~~Iya~GD~~~~~~l~~~A~~~g~~aa~~i~g~~  335 (464)
T 2eq6_A          288 RGFIRVNARME----------TSVPGVYAIGDAARPPLLAHKAMREGLIAAENAAGKD  335 (464)
T ss_dssp             TSCBCCCTTCB----------CSSTTEEECGGGTCSSCCHHHHHHHHHHHHHHHTTCC
T ss_pred             CCCEEECCCcc----------cCCCCEEEEeccCCCcccHHHHHHHHHHHHHHhcCCC
Confidence            45566666554          558999999988643 345778999999999999853

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=99.97  E-value=8.2e-32  Score=271.53  Aligned_cols=295  Identities=17%  Similarity=0.211  Sum_probs=191.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      ++||+|||||++|+++|..|++.|++|+|||++ .+||+|.+.        ||.|++.++.+..+.......|.. .+  
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~GG~~~~~--------g~ip~k~l~~~~~~~~~~~~~~~~-~g--   71 (467)
T 1zk7_A            4 PVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG-TIGGTCVNV--------GCVPSKIMIRAAHIAHLRRESPFD-GG--   71 (467)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-STTHHHHHH--------SHHHHHHHHHHHHHHHHHHCCTTT-TT--
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC-CCCccccCC--------CccchHHHHHHHHHHHHHhhhhhc-CC--
Confidence            479999999999999999999999999999997 799999874        565554333222111001111110 00  


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHH-------HHHHH-----HHHHHh-CCCCcEEeCeEEEEEEEcCCCceEEEEEeCCC
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEV-------LRYLQ-----NFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDD  148 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v-------~~yl~-----~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~  148 (446)
                       ++.          .........+       .+++.     +..++. +++  +..+ ++..++.   +.++|.+.  ++
T Consensus        72 -~~~----------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~g-~~~~~~~---~~~~v~~~--~g  132 (467)
T 1zk7_A           72 -IAA----------TVPTIDRSKLLAQQQARVDELRHAKYEGILGGNPAIT--VVHG-EARFKDD---QSLTVRLN--EG  132 (467)
T ss_dssp             -SCC----------CCCCCCHHHHHHHHHHHHHHHHHHHTHHHHTTCTTEE--EEEE-EEEEEET---TEEEEEET--TS
T ss_pred             -ccC----------CCCccCHHHHHHHHHHHHHHHhhhhHHHHHhccCCeE--EEEE-EEEEccC---CEEEEEeC--CC
Confidence             000          0000112222       23332     122222 333  3333 4555542   44555543  33


Q ss_pred             ceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEe
Q 013303          149 VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR  228 (446)
Q Consensus       149 ~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r  228 (446)
                      +..++.||+||+|||  +.|+.|++||++..  .++++.+..... ..+++|+|||+|.+|+|+|..|++.+.+|+++.+
T Consensus       133 ~~~~~~~d~lviAtG--s~p~~p~i~G~~~~--~~~~~~~~~~~~-~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~  207 (467)
T 1zk7_A          133 GERVVMFDRCLVATG--ASPAVPPIPGLKES--PYWTSTEALASD-TIPERLAVIGSSVVALELAQAFARLGSKVTVLAR  207 (467)
T ss_dssp             SEEEEECSEEEECCC--EEECCCCCTTTTTS--CCBCHHHHHHCS-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             ceEEEEeCEEEEeCC--CCCCCCCCCCCCcC--ceecHHHHhccc-ccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEE
Confidence            335799999999999  89999999998653  234444433322 2479999999999999999999999999999998


Q ss_pred             cCCc----cc----c-ccCCCC-CCeeeccceeEEccCCc---EEecCCcEEeecEEEEecCccCCCCCC--C-------
Q 013303          229 SVAD----ET----H-EKQPGY-DNMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCTGYKYNYPFL--E-------  286 (446)
Q Consensus       229 ~~~~----~~----~-~~~~~~-~~v~~~~~v~~i~~~~~---v~~~dG~~~~~D~vi~atG~~~~~~~l--~-------  286 (446)
                      .+..    ..    + +.+.+. .++..+..|.++..++.   |.+. +.++++|.||+|+|+.|+.+++  .       
T Consensus       208 ~~~~l~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~-~~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~  286 (467)
T 1zk7_A          208 NTLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHMDGEFVLTTT-HGELRADKLLVATGRTPNTRSLALDAAGVTVN  286 (467)
T ss_dssp             SCTTTTSCHHHHHHHHHHHHHTTCEEETTCCEEEEEEETTEEEEEET-TEEEEESEEEECSCEEESCTTSCGGGGTCCBC
T ss_pred             CCccCCCCHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEC-CcEEEcCEEEECCCCCcCCCcCCchhcCCcCC
Confidence            7641    00    1 111112 24566678888875443   4444 6689999999999999998763  2       


Q ss_pred             CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCccC-chhHHHHHHHHHHHHHcCC
Q 013303          287 TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI-PFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       287 ~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~-~~~~~~~qa~~~a~~l~g~  343 (446)
                      +.|.|.+|+..+          ++.|+||++|++.... ..+.+..||+.+|.++.+.
T Consensus       287 ~~G~i~vd~~~~----------t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~  334 (467)
T 1zk7_A          287 AQGAIVIDQGMR----------TSNPNIYAAGDCTDQPQFVYVAAAAGTRAAINMTGG  334 (467)
T ss_dssp             TTSCBCCCTTCB----------CSSTTEEECSTTBSSCCCHHHHHHHHHHHHHHHTTC
T ss_pred             CCCCEEECCCcc----------cCCCCEEEEeccCCCcccHHHHHHHHHHHHHHHcCC
Confidence            234455555544          4589999999986533 4677889999999999875

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=99.97  E-value=1.2e-30  Score=261.69  Aligned_cols=273  Identities=20%  Similarity=0.293  Sum_probs=189.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG   79 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~   79 (446)
                      ++||+|||||+||+++|..|++.  |.+|+|||+++.+++.....                                   
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~-----------------------------------   47 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGI-----------------------------------   47 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC-----------------------------------------
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCC-----------------------------------
Confidence            47999999999999999999998  78999999987654321100                                   


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCCHHHHHHH-HHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEE
Q 013303           80 FQAYPFVARNYEGSVDLRRYPGHEEVLRY-LQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV  158 (446)
Q Consensus        80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~y-l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~V  158 (446)
                          |..         ........++..+ ...++++++++  ++++++|+.++.   +.++|.+.++   ..++.||+|
T Consensus        48 ----p~~---------~~~~~~~~~~~~~~~~~~~~~~gi~--v~~~~~v~~i~~---~~~~v~~~~g---~~~~~~d~l  106 (449)
T 3kd9_A           48 ----PYV---------VEGLSTPDKLMYYPPEVFIKKRGID--LHLNAEVIEVDT---GYVRVRENGG---EKSYEWDYL  106 (449)
T ss_dssp             -------------------------------CTHHHHTTCE--EETTCEEEEECS---SEEEEECSSS---EEEEECSEE
T ss_pred             ----ccc---------cCCCCCHHHhhhcCHHHHHHhcCcE--EEecCEEEEEec---CCCEEEECCc---eEEEEcCEE
Confidence                000         0000111223333 33455778887  999999999865   3477754322   247899999


Q ss_pred             EEccCCCCCCccCCCCCCCCCCccEEEeeecC-------CCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYR-------IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       159 VvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~-------~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      |+|||  +.|+.|++||.+. .+ ++......       .+..+.+++|+|||+|.+|+|+|..|++.+.+|+++.+.+.
T Consensus       107 viAtG--~~p~~p~i~G~~~-~~-v~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  182 (449)
T 3kd9_A          107 VFANG--ASPQVPAIEGVNL-KG-VFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGER  182 (449)
T ss_dssp             EECCC--EEECCCSCBTTTS-TT-EECSCSTHHHHHHHHHHSSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             EECCC--CCCCCCCCCCCCC-CC-EEEeCCHHHHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCc
Confidence            99999  8999999999764 12 22221111       11234789999999999999999999999999999999764


Q ss_pred             c------c----cc-ccCCCCCCeeeccceeEEccCCc--EEecCCcEEeecEEEEecCccCCCCCCC-------CCCee
Q 013303          232 D------E----TH-EKQPGYDNMWLHSMVERANEDGT--VVFRNGRVVSADVIMHCTGYKYNYPFLE-------TNGIV  291 (446)
Q Consensus       232 ~------~----~~-~~~~~~~~v~~~~~v~~i~~~~~--v~~~dG~~~~~D~vi~atG~~~~~~~l~-------~~g~i  291 (446)
                      .      .    .+ +.+.+..++.....|.++..++.  ..+.||+++++|.||+|||+.|+.++++       +.|.|
T Consensus       183 ~l~~~~~~~~~~~l~~~l~~~v~i~~~~~v~~i~~~~~v~~v~~~g~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~~~G~i  262 (449)
T 3kd9_A          183 VLRRSFDKEVTDILEEKLKKHVNLRLQEITMKIEGEERVEKVVTDAGEYKAELVILATGIKPNIELAKQLGVRIGETGAI  262 (449)
T ss_dssp             TTTTTSCHHHHHHHHHHHTTTSEEEESCCEEEEECSSSCCEEEETTEEEECSEEEECSCEEECCHHHHHTTCCBCTTSSB
T ss_pred             cchhhcCHHHHHHHHHHHHhCcEEEeCCeEEEEeccCcEEEEEeCCCEEECCEEEEeeCCccCHHHHHhCCccCCCCCCE
Confidence            1      0    11 11222245566778888876543  4577888999999999999999987643       34556


Q ss_pred             eeCCCCcccccccccCCCCCCCeEEecCCCc-----------cCchhHHHHHHHHHHHHHcCCC
Q 013303          292 TVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-----------VIPFPFFELQSKWIASVLSGRI  344 (446)
Q Consensus       292 ~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-----------~~~~~~~~~qa~~~a~~l~g~~  344 (446)
                      .+|+..+          ++.|+||++|++..           ....+.+..||+.+|+++.|..
T Consensus       263 ~vd~~~~----------t~~~~IyA~GD~~~~~~~~~g~~~~~~l~~~A~~~g~~aa~~i~g~~  316 (449)
T 3kd9_A          263 WTNEKMQ----------TSVENVYAAGDVAETRHVITGRRVWVPLAPAGNKMGYVAGSNIAGKE  316 (449)
T ss_dssp             CCCTTCB----------CSSTTEEECSTTBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHTTCC
T ss_pred             EECCCCc----------cCCCCEEEeeeeeeeccccCCceEEeccHHHHHHHHHHHHHHhcCCC
Confidence            6666554          55899999998852           1345788999999999999863

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=99.97  E-value=2.6e-31  Score=268.63  Aligned_cols=298  Identities=18%  Similarity=0.167  Sum_probs=193.8

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC------CcCceeeeCCCCCCCCCCCCCCCCCccCC-ccCceeecC
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE------QVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNL   73 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~------~~GG~w~~~~~~~~~~~g~~p~~~~~~~~-~y~~l~~~~   73 (446)
                      +.+||+|||||++|+++|..|++.|++|+|||+++      .+||+|.+.        ||.|++.+.... .+..+....
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~~~GG~~~~~--------gciPsk~l~~~~~~~~~~~~~~   73 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNV--------GCIPSKALLDSSYKFHEAHESF   73 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHH--------SHHHHHHHHHHHHHHHHHHTTS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCCCcCCccccc--------cHHHHHHHHHHHHHHHHHHHHH
Confidence            35899999999999999999999999999999986      467777654        555554332211 111111000


Q ss_pred             CCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHH-----------HHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEE
Q 013303           74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRY-----------LQNFAREFGVDQVVRLHTEVLNARLVESNKWKVK  142 (446)
Q Consensus        74 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~y-----------l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~  142 (446)
                             ..+.+..        .........+.++           +....++.+++  +..++. ..+  .. ..+.|.
T Consensus        74 -------~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g~~-~~~--~~-~~~~v~  132 (476)
T 3lad_A           74 -------KLHGIST--------GEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVT--LFEGHG-KLL--AG-KKVEVT  132 (476)
T ss_dssp             -------GGGTEEC--------SCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCE--EEESEE-EEC--ST-TCEEEE
T ss_pred             -------HhcCccc--------CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEeEE-EEe--cC-CEEEEE
Confidence                   0011100        0011122233322           23344455665  554432 222  12 445554


Q ss_pred             EEeCCCceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCE
Q 013303          143 SRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKE  222 (446)
Q Consensus       143 ~~~~~~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~  222 (446)
                      .  .++...++.||+||+|||  +.|..|+.++.+.  ..++++.+..... ..+++|+|||+|.+|+|+|..|++.+.+
T Consensus       133 ~--~~g~~~~~~~d~lvlAtG--~~p~~~~~~~~~~--~~v~~~~~~~~~~-~~~~~v~ViGgG~~g~e~A~~l~~~g~~  205 (476)
T 3lad_A          133 A--ADGSSQVLDTENVILASG--SKPVEIPPAPVDQ--DVIVDSTGALDFQ-NVPGKLGVIGAGVIGLELGSVWARLGAE  205 (476)
T ss_dssp             C--TTSCEEEECCSCEEECCC--EEECCCTTSCCCS--SSEEEHHHHTSCS-SCCSEEEEECCSHHHHHHHHHHHHTTCE
T ss_pred             c--CCCceEEEEcCEEEEcCC--CCCCCCCCCCCCc--ccEEechhhhccc-cCCCeEEEECCCHHHHHHHHHHHHcCCc
Confidence            3  333345789999999999  7888776555332  3466666554433 3579999999999999999999999999


Q ss_pred             EEEEEecCC-----cc----cc-ccCCCCC-CeeeccceeEEccCCc---EEecCC---cEEeecEEEEecCccCCCCCC
Q 013303          223 VHIASRSVA-----DE----TH-EKQPGYD-NMWLHSMVERANEDGT---VVFRNG---RVVSADVIMHCTGYKYNYPFL  285 (446)
Q Consensus       223 V~l~~r~~~-----~~----~~-~~~~~~~-~v~~~~~v~~i~~~~~---v~~~dG---~~~~~D~vi~atG~~~~~~~l  285 (446)
                      |+++.+.+.     +.    .+ +.+.+.+ ++.....|.++..++.   +.+.++   +++++|.||+|||++|+.++|
T Consensus       206 Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~~~~l  285 (476)
T 3lad_A          206 VTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDL  285 (476)
T ss_dssp             EEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCEEECCTTC
T ss_pred             EEEEecCCCcCcccCHHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCcccCCCC
Confidence            999999864     11    11 1111222 5566778888875432   667765   578999999999999998864


Q ss_pred             --C-------CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCCC
Q 013303          286 --E-------TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGRI  344 (446)
Q Consensus       286 --~-------~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~~  344 (446)
                        .       +.|.|.+|+..+          ++.|+||++|++.. ....+.+..||+.+|+++.|+.
T Consensus       286 ~~~~~g~~~~~~G~i~vd~~~~----------t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~  344 (476)
T 3lad_A          286 LAADSGVTLDERGFIYVDDYCA----------TSVPGVYAIGDVVRGAMLAHKASEEGVVVAERIAGHK  344 (476)
T ss_dssp             CSSCCSCCBCTTSCBCCCTTSB----------CSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHCC
T ss_pred             CccccCccccCCCCEeeCCCcc----------cCCCCEEEEEccCCCcccHHHHHHHHHHHHHHhcCCC
Confidence              2       234455555444          55899999999873 4456788999999999998764

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=99.97  E-value=1.2e-31  Score=271.61  Aligned_cols=294  Identities=18%  Similarity=0.236  Sum_probs=197.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHH-CCCcEEEEe--------eCCCcCceeeeCCCCCCCCCCCCCCCCCccCCcc-Cceee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLR-EGHTVVVYE--------KGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLY-KSLRV   71 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~-~g~~v~v~e--------~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y-~~l~~   71 (446)
                      ++||+|||||++|+++|..|++ .|++|+|||        +...+||+|.+.        ||.|++.+..+..+ ..++ 
T Consensus         3 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~~~--------gciPsk~l~~~a~~~~~~~-   73 (490)
T 1fec_A            3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNV--------GCVPKKLMVTGANYMDTIR-   73 (490)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHH--------SHHHHHHHHHHHHHHHHHH-
T ss_pred             cccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCccccCC--------CcchhhHHHHHHHHHHHHH-
Confidence            5799999999999999999999 999999999        356899999875        66666544332211 1111 


Q ss_pred             cCCCCCcccCCCCCCcCCCCCCCCCC-CCCCHHHHHHHH-----------HHHHHHh-CCCCcEEeCeEEEEEEEcCCCc
Q 013303           72 NLPRELMGFQAYPFVARNYEGSVDLR-RYPGHEEVLRYL-----------QNFAREF-GVDQVVRLHTEVLNARLVESNK  138 (446)
Q Consensus        72 ~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~v~~yl-----------~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~  138 (446)
                      +.+       .|.+...       .. ......++.++.           ....++. +++  +..++ +..++.     
T Consensus        74 ~~~-------~~g~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~--~~~g~-~~~i~~-----  131 (490)
T 1fec_A           74 ESA-------GFGWELD-------RESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLT--FHQGF-GALQDN-----  131 (490)
T ss_dssp             HGG-------GGTEECC-------GGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEE--EEESE-EEEEET-----
T ss_pred             HHH-------hcCcccC-------CcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcE--EEEeE-EEEeeC-----
Confidence            110       0111000       00 001223333332           3333444 555  55553 555542     


Q ss_pred             eEEEEEe---CCCc-eEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHH
Q 013303          139 WKVKSRK---KDDV-VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKR  214 (446)
Q Consensus       139 ~~v~~~~---~~~~-~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~  214 (446)
                      .++.+..   .++. ..++.||+||+|||  +.|..|++||.+.    ++++.++.... ..+++|+|||+|.+|+|+|.
T Consensus       132 ~~v~v~~~~~~~g~~~~~~~~d~lviAtG--s~p~~p~i~g~~~----~~~~~~~~~~~-~~~~~vvViGgG~ig~E~A~  204 (490)
T 1fec_A          132 HTVLVRESADPNSAVLETLDTEYILLATG--SWPQHLGIEGDDL----CITSNEAFYLD-EAPKRALCVGGGYISIEFAG  204 (490)
T ss_dssp             TEEEEESSSSTTSCEEEEEEEEEEEECCC--EEECCCCSBTGGG----CBCHHHHTTCS-SCCSEEEEECSSHHHHHHHH
T ss_pred             CEEEEEeeccCCCCceEEEEcCEEEEeCC--CCCCCCCCCCccc----eecHHHHhhhh-hcCCeEEEECCCHHHHHHHH
Confidence            3455542   1221 24799999999999  8899999998742    33444443332 24689999999999999999


Q ss_pred             HHhcc---CCEEEEEEecCC-----ccc----c-ccCCCCC-CeeeccceeEEccCC----cEEecCCcEEeecEEEEec
Q 013303          215 DLAGF---AKEVHIASRSVA-----DET----H-EKQPGYD-NMWLHSMVERANEDG----TVVFRNGRVVSADVIMHCT  276 (446)
Q Consensus       215 ~l~~~---~~~V~l~~r~~~-----~~~----~-~~~~~~~-~v~~~~~v~~i~~~~----~v~~~dG~~~~~D~vi~at  276 (446)
                      .|++.   |.+|+++++.+.     +..    + +.+.+.+ ++..+..|.++..++    .|.+.||+++++|.||+|+
T Consensus       205 ~l~~~~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~  284 (490)
T 1fec_A          205 IFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAI  284 (490)
T ss_dssp             HHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred             HHHhhccCcCeEEEEEcCCCcccccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEcc
Confidence            99999   999999999864     111    1 1111222 566677888887542    3778899999999999999


Q ss_pred             CccCCCCCC--C-------CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCC
Q 013303          277 GYKYNYPFL--E-------TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       277 G~~~~~~~l--~-------~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~  343 (446)
                      |++|+.++|  .       +.|.|.+|+.++          ++.|+||++|++.. ....+.+..||+.+|.++.|.
T Consensus       285 G~~p~~~~L~l~~~gl~~~~~G~I~Vd~~~~----------t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~  351 (490)
T 1fec_A          285 GRVPRSQTLQLEKAGVEVAKNGAIKVDAYSK----------TNVDNIYAIGDVTDRVMLTPVAINEGAAFVDTVFAN  351 (490)
T ss_dssp             CEEESCTTSCGGGGTCCBCTTSCBCCCTTCB----------CSSTTEEECGGGGCSCCCHHHHHHHHHHHHHHHHSS
T ss_pred             CCCcCccccCchhcCccCCCCCCEEECCCCc----------cCCCCEEEEeccCCCccCHHHHHHHHHHHHHHhcCC
Confidence            999999854  2       234566665544          45899999999875 345678899999999999874

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=99.97  E-value=9.8e-32  Score=270.06  Aligned_cols=291  Identities=16%  Similarity=0.136  Sum_probs=195.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCC-ccCceeecCCCCCccc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF   80 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~-~y~~l~~~~~~~~~~~   80 (446)
                      .+||+|||||+||+++|..|++.|++|+|||+++.+||+|.+.        ||.|++.++... .+..+..  +...+.+
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~--------g~~p~k~l~~~~~~~~~~~~--~~~g~~~   70 (455)
T 2yqu_A            1 MYDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCLRV--------GCIPSKALLETTERIYEAKK--GLLGAKV   70 (455)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHH--------SHHHHHHHHHHHHHHHHHHH--CCTTEEE
T ss_pred             CCCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCcccee--------cchhHHHHHHHHHHHHHHhh--hcCCccc
Confidence            3699999999999999999999999999999998999999864        555554333211 1111111  1000000


Q ss_pred             CCCCCCcCCCCCCCCCCCCCCHHHHH-----------HHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCc
Q 013303           81 QAYPFVARNYEGSVDLRRYPGHEEVL-----------RYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV  149 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~~~v~-----------~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~  149 (446)
                      .+.               ..+..++.           ..+..++++.+++  +..++.+. +  +. ..++|.+ ++   
T Consensus        71 ~~~---------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~--~~~g~~~~-i--~~-~~~~v~~-~g---  125 (455)
T 2yqu_A           71 KGV---------------ELDLPALMAHKDKVVQANTQGVEFLFKKNGIA--RHQGTARF-L--SE-RKVLVEE-TG---  125 (455)
T ss_dssp             CCE---------------EECHHHHHHHHHHHHHHHHHHHHHHHHHHTCE--EEESCEEE-S--SS-SEEEETT-TC---
T ss_pred             CCC---------------ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEeEEEE-e--cC-CeEEEee-CC---
Confidence            000               01112222           2234556667776  66665432 2  11 3344433 22   


Q ss_pred             eEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303          150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS  229 (446)
Q Consensus       150 ~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~  229 (446)
                       .++.||+||+|||  +.|..|+++|.+.  ..++++.++..... .+++|+|||+|.+|+|+|..|++.+.+|+++.+.
T Consensus       126 -~~~~~d~lviAtG--~~p~~~~~~g~~~--~~v~~~~~~~~~~~-~~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~  199 (455)
T 2yqu_A          126 -EELEARYILIATG--SAPLIPPWAQVDY--ERVVTSTEALSFPE-VPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYM  199 (455)
T ss_dssp             -CEEEEEEEEECCC--EEECCCTTBCCCS--SSEECHHHHTCCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             -EEEEecEEEECCC--CCCCCCCCCCCCc--CcEechHHhhcccc-CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence             3789999999999  7899998888653  13666665544332 4699999999999999999999999999999987


Q ss_pred             CCc-----cc----c-ccCCCC-CCeeeccceeEEccCC-c--EEecCCcEEeecEEEEecCccCCCCCC--CC------
Q 013303          230 VAD-----ET----H-EKQPGY-DNMWLHSMVERANEDG-T--VVFRNGRVVSADVIMHCTGYKYNYPFL--ET------  287 (446)
Q Consensus       230 ~~~-----~~----~-~~~~~~-~~v~~~~~v~~i~~~~-~--v~~~dG~~~~~D~vi~atG~~~~~~~l--~~------  287 (446)
                      +..     ..    + +.+.+. .++..+..|.++..++ .  +.++||+++++|.||+|||++|+.+++  +.      
T Consensus       200 ~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~p~~~~l~~~~~g~~~~  279 (455)
T 2yqu_A          200 DRILPTMDLEVSRAAERVFKKQGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTD  279 (455)
T ss_dssp             SSSCTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECCTTCCGGGGTCCCC
T ss_pred             CccccccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCCcCCCCCChhhcCCccC
Confidence            641     00    1 111111 2556677888887543 2  456689999999999999999998874  22      


Q ss_pred             -CCeeeeCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCC
Q 013303          288 -NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       288 -~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~  343 (446)
                       .|.+.+|+..+          ++.|+||++|++... ...+.+..||+.+|.++.|.
T Consensus       280 ~~g~i~vd~~~~----------t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~  327 (455)
T 2yqu_A          280 ERGRIPVDEHLR----------TRVPHIYAIGDVVRGPMLAHKASEEGIAAVEHMVRG  327 (455)
T ss_dssp             TTSCCCCCTTSB----------CSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHS
T ss_pred             CCCcEeECCCcc----------cCCCCEEEEecCCCCccCHHHHHHhHHHHHHHHcCC
Confidence             23344444333          448999999988643 34567899999999999875

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=99.97  E-value=9.4e-33  Score=270.68  Aligned_cols=260  Identities=12%  Similarity=0.140  Sum_probs=180.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      +.+|+|||||+||++||..|...+.+|+|||+++.++.. ..                     ..       ++.+.+  
T Consensus         9 ~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~-~~---------------------~l-------~~~l~g--   57 (385)
T 3klj_A            9 STKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYY-RP---------------------RL-------NEIIAK--   57 (385)
T ss_dssp             BCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBC-GG---------------------GH-------HHHHHS--
T ss_pred             CCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcc-cC---------------------hh-------hHHHcC--
Confidence            568999999999999999997778999999998765310 00                     00       000000  


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                       ..+.+++..+..++.++++++  ++++++|++|++..   .+|++.++.    ++.||+||+|
T Consensus        58 -----------------~~~~~~l~~~~~~~~~~~~i~--~~~~~~V~~id~~~---~~v~~~~g~----~~~yd~lvlA  111 (385)
T 3klj_A           58 -----------------NKSIDDILIKKNDWYEKNNIK--VITSEFATSIDPNN---KLVTLKSGE----KIKYEKLIIA  111 (385)
T ss_dssp             -----------------CCCGGGTBSSCHHHHHHTTCE--EECSCCEEEEETTT---TEEEETTSC----EEECSEEEEC
T ss_pred             -----------------CCCHHHccCCCHHHHHHCCCE--EEeCCEEEEEECCC---CEEEECCCC----EEECCEEEEe
Confidence                             000112222334555677887  89999999998754   567776554    7899999999


Q ss_pred             cCCCCCCccCCCCCCCCCCccEEEeeecCCCCCC-----CCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc--c-
Q 013303          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPF-----QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD--E-  233 (446)
Q Consensus       162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~-----~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~--~-  233 (446)
                      ||  +.|+.|++||.+    .+++...+.+...+     .+++|+|||+|.+|+|+|..|++.|.+|+++.+.+..  . 
T Consensus       112 tG--~~p~~p~i~G~~----~v~~~~~~~d~~~l~~~l~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~  185 (385)
T 3klj_A          112 SG--SIANKIKVPHAD----EIFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQ  185 (385)
T ss_dssp             CC--EEECCCCCTTCS----CEECCSSHHHHHHHHHHHHHHSCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTT
T ss_pred             cC--CCcCCCCCCCCC----CeEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhh
Confidence            99  899999999986    23343322222212     2789999999999999999999999999999987641  0 


Q ss_pred             -------cccc-CCCCC-CeeeccceeEEccCCcEEecCCcEEeecEEEEecCccCCCCCCCCCC-----eeeeCCCCcc
Q 013303          234 -------THEK-QPGYD-NMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLETNG-----IVTVDDNRVG  299 (446)
Q Consensus       234 -------~~~~-~~~~~-~v~~~~~v~~i~~~~~v~~~dG~~~~~D~vi~atG~~~~~~~l~~~g-----~i~~~~~~~~  299 (446)
                             .+.+ +.+.+ ++.....|.++          |+++++|.||+|||++|+.+++...|     .+.+|+.++ 
T Consensus       186 ~~~~~~~~~~~~l~~~gV~~~~~~~v~~i----------g~~~~~D~vv~a~G~~p~~~~~~~~gl~~~~gi~vd~~~~-  254 (385)
T 3klj_A          186 LDRDGGLFLKDKLDRLGIKIYTNSNFEEM----------GDLIRSSCVITAVGVKPNLDFIKDTEIASKRGILVNDHME-  254 (385)
T ss_dssp             SCHHHHHHHHHHHHTTTCEEECSCCGGGC----------HHHHHHSEEEECCCEEECCGGGTTSCCCBSSSEEECTTCB-
T ss_pred             cCHHHHHHHHHHHHhCCCEEEeCCEEEEc----------CeEEecCeEEECcCcccChhhhhhcCCCcCCCEEECCCcc-
Confidence                   0000 01111 22222222222          66789999999999999998875432     255665554 


Q ss_pred             cccccccCCCCCCCeEEecCCCc-----cCchhHHHHHHHHHHHHHcCCC
Q 013303          300 PLYKHVFPPVLAPGLSFVGIPQK-----VIPFPFFELQSKWIASVLSGRI  344 (446)
Q Consensus       300 ~l~~~~~~~~~~p~l~~iG~~~~-----~~~~~~~~~qa~~~a~~l~g~~  344 (446)
                               ++.|+||++|++..     ......+..||+.+|+++.|+.
T Consensus       255 ---------t~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~g~~  295 (385)
T 3klj_A          255 ---------TSIKDIYACGDVAEFYGKNPGLINIANKQGEVAGLNACGED  295 (385)
T ss_dssp             ---------CSSTTEEECGGGEEETTBCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred             ---------cCCCCEEEEEeeEecCCCcccHHHHHHHHHHHHHHHhcCCC
Confidence                     45899999998864     3345778999999999999863

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=99.97  E-value=1.2e-31  Score=269.98  Aligned_cols=289  Identities=16%  Similarity=0.171  Sum_probs=195.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .+||+|||||++|+++|..|++.|++|+|||+ +.+||+|.+.        ||.|++.++.+........+       +.
T Consensus         5 ~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~~--------gcip~k~l~~~~~~~~~~~~-------~~   68 (463)
T 4dna_A            5 DYDLFVIGGGSGGVRSGRLAAALGKKVAIAEE-FRYGGTCVIR--------GCVPKKLYVYASQFAEHFED-------AA   68 (463)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTHHHHHH--------SHHHHHHHHHHHHHHHHHHH-------GG
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCEEEEEeC-CCCCCccccc--------CchhhHHHHHHHHHHHHHHH-------HH
Confidence            36999999999999999999999999999999 7899999864        56555433222111110001       11


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHH-----------HHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCce
Q 013303           82 AYPFVARNYEGSVDLRRYPGHE-----------EVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV  150 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~-----------~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~  150 (446)
                      .|.+...       . ...+..           .+..++..+.++.+++  +..+ ++..+     +.+++.+.. +  .
T Consensus        69 ~~g~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g-~~~~i-----~~~~v~~~~-~--~  129 (463)
T 4dna_A           69 GFGWTVG-------E-SRFDWAKLVAAKEQEIARLEGLYRKGLANAGAE--ILDT-RAELA-----GPNTVKLLA-S--G  129 (463)
T ss_dssp             GGTEEEC-------C-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCE--EEES-CEEES-----SSSEEEETT-T--T
T ss_pred             hcCcccC-------C-CCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEE-EEEEe-----eCCEEEEec-C--C
Confidence            1111100       0 001122           2333445555556765  4444 44433     234555521 1  1


Q ss_pred             EEEEEcEEEEccCCCCCCc-cCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303          151 EEETFDAVVVCNGHFSVPR-LAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS  229 (446)
Q Consensus       151 ~~~~~d~VVvAtG~~s~p~-~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~  229 (446)
                      .++.||+||+|||  +.|. .|.+||.+.    ..++.++.... ..+++|+|||+|.+|+|+|..+++.+.+|+++.+.
T Consensus       130 ~~~~~d~lviAtG--~~p~~~p~i~G~~~----~~~~~~~~~~~-~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~  202 (463)
T 4dna_A          130 KTVTAERIVIAVG--GHPSPHDALPGHEL----CITSNEAFDLP-ALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRG  202 (463)
T ss_dssp             EEEEEEEEEECCC--EEECCCTTSTTGGG----CBCHHHHTTCS-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             eEEEeCEEEEecC--CCcccCCCCCCccc----cccHHHHhhhh-cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcC
Confidence            4789999999999  8899 999999763    33444443332 24799999999999999999999999999999987


Q ss_pred             CC-----cc----cc-ccCCCC-CCeeeccceeEEccC--C--cEE-ecCCcEEeecEEEEecCccCCCCCCC-------
Q 013303          230 VA-----DE----TH-EKQPGY-DNMWLHSMVERANED--G--TVV-FRNGRVVSADVIMHCTGYKYNYPFLE-------  286 (446)
Q Consensus       230 ~~-----~~----~~-~~~~~~-~~v~~~~~v~~i~~~--~--~v~-~~dG~~~~~D~vi~atG~~~~~~~l~-------  286 (446)
                      +.     +.    .+ +.+.+. .++..+..|.++..+  +  .|. +.||+ +++|.||+|+|+.|+.++|.       
T Consensus       203 ~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~  281 (463)
T 4dna_A          203 KEILSRFDQDMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGRMPNTNGLGLEAAGVR  281 (463)
T ss_dssp             SSSSTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCEEESCTTSSTGGGTCC
T ss_pred             CccccccCHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCcccCCCCCCccccCce
Confidence            64     11    11 111122 256667788888754  2  367 78888 99999999999999998742       


Q ss_pred             --CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCC
Q 013303          287 --TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       287 --~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~  343 (446)
                        +.|.|.+|++.+          ++.|+||++|++.. ....+.+..||+++|+++.|.
T Consensus       282 ~~~~G~i~vd~~~~----------t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~  331 (463)
T 4dna_A          282 TNELGAIIVDAFSR----------TSTPGIYALGDVTDRVQLTPVAIHEAMCFIETEYKN  331 (463)
T ss_dssp             BCTTSCBCCCTTCB----------CSSTTEEECSGGGSSCCCHHHHHHHHHHHHHHHHSS
T ss_pred             ECCCCCEeECcCCC----------CCCCCEEEEEecCCCCCChHHHHHHHHHHHHHHcCC
Confidence              334455555544          55899999999875 344578899999999999875

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=99.97  E-value=2.2e-31  Score=269.19  Aligned_cols=290  Identities=16%  Similarity=0.189  Sum_probs=193.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      ++||+|||||++|+++|..|++.|++|+|||++ .+||+|.+.        ||.|++.++.+........       .+.
T Consensus        20 ~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~-~~GG~~~~~--------gc~p~k~l~~~~~~~~~~~-------~~~   83 (478)
T 3dk9_A           20 SYDYLVIGGGSGGLASARRAAELGARAAVVESH-KLGGTCVNV--------GCVPKKVMWNTAVHSEFMH-------DHA   83 (478)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHH--------SHHHHHHHHHHHHHHHHHT-------TTT
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCccccc--------CccchHHHHHHHHHHHHHH-------HHH
Confidence            379999999999999999999999999999975 799999775        5665543332221111100       111


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHH-----------HHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCce
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNF-----------AREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV  150 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~-----------~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~  150 (446)
                      .|.+...        ....+..++.++...+           .+..++.  +..+ ++..+..   ..++|.. ++    
T Consensus        84 ~~g~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g-~~~~~~~---~~~~v~~-~g----  144 (478)
T 3dk9_A           84 DYGFPSC--------EGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIE--IIRG-HAAFTSD---PKPTIEV-SG----  144 (478)
T ss_dssp             TTTSCCC--------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEES-CEEECSC---SSCEEEE-TT----
T ss_pred             hcCccCC--------CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcE--EEEe-EEEEeeC---CeEEEEE-CC----
Confidence            1222111        1223444545444433           3334554  3333 2333221   3466662 22    


Q ss_pred             EEEEEcEEEEccCCCCCCccC---CCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEE
Q 013303          151 EEETFDAVVVCNGHFSVPRLA---QVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIAS  227 (446)
Q Consensus       151 ~~~~~d~VVvAtG~~s~p~~p---~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~  227 (446)
                      .++.||+||+|||  +.|..|   ++||.+.    ..++..+..... .+++|+|||+|.+|+|+|..|++.|.+|+++.
T Consensus       145 ~~~~~d~lviAtG--~~p~~p~~~~i~G~~~----~~~~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~  217 (478)
T 3dk9_A          145 KKYTAPHILIATG--GMPSTPHESQIPGASL----GITSDGFFQLEE-LPGRSVIVGAGYIAVEMAGILSALGSKTSLMI  217 (478)
T ss_dssp             EEEECSCEEECCC--EEECCCCTTTSTTGGG----SBCHHHHTTCCS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             EEEEeeEEEEccC--CCCCCCCcCCCCCCce----eEchHHhhchhh-cCccEEEECCCHHHHHHHHHHHHcCCeEEEEE
Confidence            3699999999999  899999   8999762    344444444332 46899999999999999999999999999999


Q ss_pred             ecCC-----cc----cc-ccCCCC-CCeeeccceeEEccC--C---cEEecC---C----cEEeecEEEEecCccCCCCC
Q 013303          228 RSVA-----DE----TH-EKQPGY-DNMWLHSMVERANED--G---TVVFRN---G----RVVSADVIMHCTGYKYNYPF  284 (446)
Q Consensus       228 r~~~-----~~----~~-~~~~~~-~~v~~~~~v~~i~~~--~---~v~~~d---G----~~~~~D~vi~atG~~~~~~~  284 (446)
                      +.+.     +.    .+ +.+.+. -++.....|.++..+  +   .+.+.|   |    +++++|.||+|+|++|+.++
T Consensus       218 ~~~~~l~~~d~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~  297 (478)
T 3dk9_A          218 RHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKD  297 (478)
T ss_dssp             SSSSSCTTSCHHHHHHHHHHHHHTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCTT
T ss_pred             eCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCCC
Confidence            8764     11    11 111122 245556678888643  3   255665   2    56899999999999999986


Q ss_pred             C---------CCCCeeeeCCCCcccccccccCCCCCCCeEEecCCC-ccCchhHHHHHHHHHHHHHcCC
Q 013303          285 L---------ETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQ-KVIPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       285 l---------~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~-~~~~~~~~~~qa~~~a~~l~g~  343 (446)
                      |         ++.|.|.+|++.+          ++.|+||++|++. .....+.+..||+.+|+++.|.
T Consensus       298 l~l~~~g~~~~~~G~i~vd~~~~----------t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~  356 (478)
T 3dk9_A          298 LSLNKLGIQTDDKGHIIVDEFQN----------TNVKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFEY  356 (478)
T ss_dssp             SCGGGGTCCBCTTCCBCCCTTCB----------CSSTTEEECGGGGCSSCCHHHHHHHHHHHHHHHHSC
T ss_pred             CCchhcCCeeCCCCCEeeCCCcc----------cCCCCEEEEEecCCCCccHhHHHHHHHHHHHHHcCC
Confidence            4         2345566666554          5589999999987 3445678899999999999876

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=99.97  E-value=5.7e-32  Score=274.00  Aligned_cols=291  Identities=16%  Similarity=0.122  Sum_probs=194.5

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d   82 (446)
                      +||+||||||||++||..|++.|++|+|||++ .+||+|.+.        ||.|++.++.+..+.....+       ++.
T Consensus         9 ~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~-~~GGtc~~~--------gciPsk~l~~~a~~~~~~~~-------~~~   72 (492)
T 3ic9_A            9 VDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGG-AYGTTCARV--------GCMPSKLLIAAADASYHASQ-------TDL   72 (492)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTCSCEEEEESS-CSSCHHHHH--------SHHHHHHHHHHHHHHHHHTC-------GGG
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCC-CCCCccccc--------ChhcCHHHHHHHHHHHHHhh-------hhh
Confidence            69999999999999999999999999999996 599999875        77776655443321111111       111


Q ss_pred             CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCC---------C-cEEeCeEEEEEEEcCCCceEEEEEeCCCceEE
Q 013303           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVD---------Q-VVRLHTEVLNARLVESNKWKVKSRKKDDVVEE  152 (446)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~---------~-~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~  152 (446)
                      |.++.        .....+..++.+++.++.+++...         . .+. ..+..-+     +.++|.+.++    .+
T Consensus        73 ~g~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~g~a~~~-----~~~~v~~~~~----~~  134 (492)
T 3ic9_A           73 FGIQV--------DRISVNGKAVMKRIQTERDRFVGFVVESVESFDEQDKI-RGFAKFL-----DEHTLQVDDH----SQ  134 (492)
T ss_dssp             GTEEC--------SEEEECHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGEE-ESCEEEE-----ETTEEEETTT----EE
T ss_pred             cCcCC--------CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcCeeEE-EEEEEEe-----cCCEEEEcCC----cE
Confidence            11110        011134566666666555543211         0 011 1111111     3366666433    37


Q ss_pred             EEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC-
Q 013303          153 ETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-  231 (446)
Q Consensus       153 ~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~-  231 (446)
                      +.||+||||||  +.|..|+++|..  ...++++.++.... ..+++|+|||+|.+|+|+|..|++.|.+|+++.+.+. 
T Consensus       135 ~~~d~lViATG--s~p~~p~~~~~~--~~~v~t~~~~~~~~-~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  209 (492)
T 3ic9_A          135 VIAKRIVIATG--SRPNYPEFLAAA--GSRLLTNDNLFELN-DLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSV  209 (492)
T ss_dssp             EEEEEEEECCC--EECCCCHHHHTT--GGGEECHHHHTTCS-SCCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCC
T ss_pred             EEeCEEEEccC--CCCcCCCCCCcc--CCcEEcHHHHhhhh-hcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcc
Confidence            99999999999  899988876543  23455555544433 3479999999999999999999999999999999875 


Q ss_pred             ----cc----cc-ccCCCCCCeeeccceeEEccCC-c--EEec--CC--cEEeecEEEEecCccCCCCCCC---------
Q 013303          232 ----DE----TH-EKQPGYDNMWLHSMVERANEDG-T--VVFR--NG--RVVSADVIMHCTGYKYNYPFLE---------  286 (446)
Q Consensus       232 ----~~----~~-~~~~~~~~v~~~~~v~~i~~~~-~--v~~~--dG--~~~~~D~vi~atG~~~~~~~l~---------  286 (446)
                          +.    .+ +.+.+.-++.....|+++..++ .  +.+.  ||  +++++|.||+|||++|+.++|+         
T Consensus       210 l~~~d~~~~~~l~~~l~~~V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~  289 (492)
T 3ic9_A          210 ANLQDEEMKRYAEKTFNEEFYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKANVDKLGLENTSIELD  289 (492)
T ss_dssp             TTCCCHHHHHHHHHHHHTTSEEETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCCEESCSSSCGGGSCCCBC
T ss_pred             cccCCHHHHHHHHHHHhhCcEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCCccCCCCCChhhcCCEEC
Confidence                11    11 1111224556677888886543 2  4554  78  6789999999999999999842         


Q ss_pred             CCCeeeeC-CCCcccccccccCCCCCCCeEEecCCCccC-chhHHHHHHHHHHHHHcC
Q 013303          287 TNGIVTVD-DNRVGPLYKHVFPPVLAPGLSFVGIPQKVI-PFPFFELQSKWIASVLSG  342 (446)
Q Consensus       287 ~~g~i~~~-~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~-~~~~~~~qa~~~a~~l~g  342 (446)
                      +.|.+.+| +..+          ++.|+||++|++.... ..+.+..||+.+|.++.+
T Consensus       290 ~~G~i~vd~~~~~----------t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~  337 (492)
T 3ic9_A          290 KKNSPLFDELTLQ----------TSVDHIFVAGDANNTLTLLHEAADDGKVAGTNAGA  337 (492)
T ss_dssp             TTCCBCCCTTTCB----------CSSTTEEECGGGGTSSCSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEeECccccc----------CCCCCEEEEEecCCCCccHHHHHHHHHHHHHHHcC
Confidence            23445555 3333          4589999999987543 446889999999999986

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=99.97  E-value=8.8e-32  Score=273.20  Aligned_cols=298  Identities=14%  Similarity=0.115  Sum_probs=194.2

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeC--------CCcCceeeeCCCCCCCCCCCCCCCCCccCCc-cCceeecC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKG--------EQVGGSWIYTSETESDPLGVDPNRYPVHSSL-YKSLRVNL   73 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~--------~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~-y~~l~~~~   73 (446)
                      +||+||||||+|+.||..+++.|.+|+|+|+.        ..+||+|.+.        ||+|+|.++++.. ++.++.+.
T Consensus        43 YDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~~~~~k~~lGGtCln~--------GCIPsK~L~~aa~~~~~~~~~~  114 (542)
T 4b1b_A           43 YDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTCVNV--------GCVPKKLMHYAGHMGSIFKLDS  114 (542)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCCCTTCCCCCSSHHHHHH--------SHHHHHHHHHHHHHHHHHHHTG
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCCCccccc--------chHHHHHHHHHHHHHHHHHhhh
Confidence            69999999999999999999999999999964        3589999886        9999987765442 22211111


Q ss_pred             CCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHH-----------HHhCCCCcEEeCeEEEEEEEcCCCceEEE
Q 013303           74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFA-----------REFGVDQVVRLHTEVLNARLVESNKWKVK  142 (446)
Q Consensus        74 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~-----------~~~~l~~~i~~~~~V~~v~~~~~~~~~v~  142 (446)
                      ......+...               -....++.++.+...           ++.+++  + +.....-+.+   ....|.
T Consensus       115 ~~~Gi~~~~~---------------~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~--~-i~G~a~f~~~---~~v~V~  173 (542)
T 4b1b_A          115 KAYGWKFDNL---------------KHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVK--Y-INGLAKLKDK---NTVSYY  173 (542)
T ss_dssp             GGGTEEEEEE---------------EECHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--E-ECEEEEEEET---TEEEEE
T ss_pred             HhcCcccCcc---------------cccHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--E-EeeeEEEcCC---CcceEe
Confidence            1100011000               012234444433332           333443  2 2222222221   223333


Q ss_pred             EEeCCCceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCE
Q 013303          143 SRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKE  222 (446)
Q Consensus       143 ~~~~~~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~  222 (446)
                      .....+..+++++|++|||||  ++|.+|+.++.+.  ..++.|.+....+. .+++++|||+|++|+|+|..+++.|.+
T Consensus       174 ~~~~~~~~~~i~a~~iiIATG--s~P~~P~~~~~~~--~~~~ts~~~l~l~~-lP~~lvIIGgG~IGlE~A~~~~~lG~~  248 (542)
T 4b1b_A          174 LKGDLSKEETVTGKYILIATG--CRPHIPDDVEGAK--ELSITSDDIFSLKK-DPGKTLVVGASYVALECSGFLNSLGYD  248 (542)
T ss_dssp             EC--CCCEEEEEEEEEEECCC--EEECCCSSSBTHH--HHCBCHHHHTTCSS-CCCSEEEECCSHHHHHHHHHHHHHTCC
T ss_pred             ecccCCceEEEeeeeEEeccC--CCCCCCCcccCCC--ccccCchhhhcccc-CCceEEEECCCHHHHHHHHHHHhcCCe
Confidence            333233456899999999999  9999986544322  12345555444333 468999999999999999999999999


Q ss_pred             EEEEEecCC----ccc----c-ccCCCCC-CeeeccceeEEccCCc---EEecCCcEEeecEEEEecCccCCCCCCCCC-
Q 013303          223 VHIASRSVA----DET----H-EKQPGYD-NMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCTGYKYNYPFLETN-  288 (446)
Q Consensus       223 V~l~~r~~~----~~~----~-~~~~~~~-~v~~~~~v~~i~~~~~---v~~~dG~~~~~D~vi~atG~~~~~~~l~~~-  288 (446)
                      ||++.|+..    ++.    + +.+.+.+ .+.....++++...+.   |.+.+++++++|.|++|+|++||+..|..+ 
T Consensus       249 VTii~~~~~L~~~D~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~Pnt~~L~le~  328 (542)
T 4b1b_A          249 VTVAVRSIVLRGFDQQCAVKVKLYMEEQGVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRKGDIDGLNLES  328 (542)
T ss_dssp             EEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEESCGGGCGGG
T ss_pred             EEEecccccccccchhHHHHHHHHHHhhcceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccccCCccccCccc
Confidence            999987543    111    1 1111222 4556667777764432   667899999999999999999999876421 


Q ss_pred             ---------CeeeeCCCCcccccccccCCCCCCCeEEecCCCcc--CchhHHHHHHHHHHHHHcCCC
Q 013303          289 ---------GIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV--IPFPFFELQSKWIASVLSGRI  344 (446)
Q Consensus       289 ---------g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~--~~~~~~~~qa~~~a~~l~g~~  344 (446)
                               +.+.+|+.++          ++.|+||++|++...  ...+.+..|++.++.++.|..
T Consensus       329 ~gv~~~~~~~~i~vd~~~~----------Ts~p~IyAiGDv~~~~p~La~~A~~eg~~aa~~i~g~~  385 (542)
T 4b1b_A          329 LNMNVNKSNNKIIADHLSC----------TNIPSIFAVGDVAENVPELAPVAIKAGEILARRLFKDS  385 (542)
T ss_dssp             TTCCEETTTTEECCCTTSB----------CSSTTEEECTTSBTTCCCCHHHHHHHHHHHHHHHHSCC
T ss_pred             ceeeecccCceEecccccc----------ccCCCeEEeccccCCchhHHHHHHHHHHHHHHHHhcCC
Confidence                     2234444444          669999999998743  356788999999999998753

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=99.97  E-value=1.8e-31  Score=271.94  Aligned_cols=296  Identities=18%  Similarity=0.205  Sum_probs=191.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC--------CcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE--------QVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNL   73 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~--------~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~   73 (446)
                      .+||+||||||||++||..|++.|++|+|||+.+        .+||+|.+.        ||.|++.+..+..+.....  
T Consensus        32 ~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~--------GciPsk~l~~~~~~~~~~~--  101 (519)
T 3qfa_A           32 DYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNV--------GCIPKKLMHQAALLGQALQ--  101 (519)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHHH--------SHHHHHHHHHHHHHHHHHH--
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCCc--------CccchHHHHHHHHHHHHHH--
Confidence            3699999999999999999999999999999854        789999875        6777654333221111100  


Q ss_pred             CCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHH-----------HhCCCCcEEeCeEEEEEEEcCCCceEEE
Q 013303           74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAR-----------EFGVDQVVRLHTEVLNARLVESNKWKVK  142 (446)
Q Consensus        74 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~-----------~~~l~~~i~~~~~V~~v~~~~~~~~~v~  142 (446)
                           .+..|.+...       .........+.++...+.+           ..++.  +. ..++..++.     +.+.
T Consensus       102 -----~~~~~g~~~~-------~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~--~i-~g~a~~~d~-----~~v~  161 (519)
T 3qfa_A          102 -----DSRNYGWKVE-------ETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVV--YE-NAYGQFIGP-----HRIK  161 (519)
T ss_dssp             -----HHHHTTBCCC-------SSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EE-CSEEEEEET-----TEEE
T ss_pred             -----HHHhcCcccC-------CcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EE-EEEEEEeeC-----CEEE
Confidence                 0111222111       1123345566666554443           23443  32 334444432     3344


Q ss_pred             EEeCCCceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCE
Q 013303          143 SRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKE  222 (446)
Q Consensus       143 ~~~~~~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~  222 (446)
                      +...+++..++.||+||||||  +.|+.|++||.+.   .++++.++.... ..+++|+|||+|.+|+|+|..|++.|.+
T Consensus       162 v~~~~g~~~~i~~d~lViATG--s~p~~p~i~G~~~---~~~t~~~~~~l~-~~~~~vvVIGgG~ig~E~A~~l~~~G~~  235 (519)
T 3qfa_A          162 ATNNKGKEKIYSAERFLIATG--ERPRYLGIPGDKE---YCISSDDLFSLP-YCPGKTLVVGASYVALECAGFLAGIGLD  235 (519)
T ss_dssp             EECTTCCCCEEEEEEEEECCC--EEECCCCCTTHHH---HCBCHHHHTTCS-SCCCSEEEECCSHHHHHHHHHHHHTTCC
T ss_pred             EEcCCCCEEEEECCEEEEECC--CCcCCCCCCCccC---ceEcHHHHhhhh-hcCCeEEEECCcHHHHHHHHHHHHcCCe
Confidence            444333345799999999999  8999999999654   234444444433 3457799999999999999999999999


Q ss_pred             EEEEEecCC----ccc----c-ccCCCCC-CeeeccceeEEcc--C---Cc--EEe--cCCc---EEeecEEEEecCccC
Q 013303          223 VHIASRSVA----DET----H-EKQPGYD-NMWLHSMVERANE--D---GT--VVF--RNGR---VVSADVIMHCTGYKY  280 (446)
Q Consensus       223 V~l~~r~~~----~~~----~-~~~~~~~-~v~~~~~v~~i~~--~---~~--v~~--~dG~---~~~~D~vi~atG~~~  280 (446)
                      |+++.+...    +..    + +.+.+.+ ++.....+.++..  +   +.  +.+  .+|.   ++++|.||+|+|++|
T Consensus       236 Vtlv~~~~~l~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p  315 (519)
T 3qfa_A          236 VTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDA  315 (519)
T ss_dssp             EEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEE
T ss_pred             EEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcc
Confidence            999998532    111    1 1111122 4455544444432  1   22  322  4563   467999999999999


Q ss_pred             CCCCC--CC--------CCeeeeCCCCcccccccccCCCCCCCeEEecCCC-c-cCchhHHHHHHHHHHHHHcCC
Q 013303          281 NYPFL--ET--------NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQ-K-VIPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       281 ~~~~l--~~--------~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~-~-~~~~~~~~~qa~~~a~~l~g~  343 (446)
                      +.++|  +.        .|.|.+|++++          ++.|+||++|++. . ....+.+..||+.+|+++.|.
T Consensus       316 ~~~~l~l~~~gl~~~~~~G~I~Vd~~~~----------Ts~~~IyA~GD~~~g~~~~~~~A~~~g~~aa~~i~g~  380 (519)
T 3qfa_A          316 CTRKIGLETVGVKINEKTGKIPVTDEEQ----------TNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAG  380 (519)
T ss_dssp             SCSSSCSTTTTCCCCTTTCCBCCCTTSB----------CSSTTEEECGGGBSSSCCCHHHHHHHHHHHHHHHHSC
T ss_pred             cCCCCChhhcCcEEcCCCCeEeeCCCCc----------cCCCCEEEEEeccCCCCccHHHHHHHHHHHHHHHcCC
Confidence            99874  22        34455555544          5589999999986 2 345578899999999999875

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=99.97  E-value=2.2e-31  Score=268.23  Aligned_cols=295  Identities=17%  Similarity=0.217  Sum_probs=197.2

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccC-CccCceeecCCCCCcccC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHS-SLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~-~~y~~l~~~~~~~~~~~~   81 (446)
                      +||+|||||++|+++|..|++.|++|+|||+. .+||.|...        ||.|++.++.. ..++.+......  +++.
T Consensus         4 ~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~-~~gG~~~~~--------g~~psk~ll~~~~~~~~~~~~~~~--~g~~   72 (464)
T 2a8x_A            4 YDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-YWGGVCLNV--------GCIPSKALLRNAELVHIFTKDAKA--FGIS   72 (464)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CTTHHHHHH--------SHHHHHHHHHHHHHHHHHHHHTTT--TTEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCccccc--------CchhhHHHHHHHHHHHHHHHHHHh--cCCC
Confidence            69999999999999999999999999999997 789998753        44443322211 011111100000  0110


Q ss_pred             C---CCCCcCCCCCCCCCCCCCC----HHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEE
Q 013303           82 A---YPFVARNYEGSVDLRRYPG----HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET  154 (446)
Q Consensus        82 d---~~~~~~~~~~~~~~~~~~~----~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~  154 (446)
                      +   +++..          ....    ...+.+.+.+.+++.+++  ++.++.+. +  +. +.++|...+  +...++.
T Consensus        73 ~~~~~~~~~----------~~~~~~~~~~~l~~~l~~~~~~~gv~--~~~g~~~~-i--d~-~~v~V~~~~--G~~~~~~  134 (464)
T 2a8x_A           73 GEVTFDYGI----------AYDRSRKVAEGRVAGVHFLMKKNKIT--EIHGYGTF-A--DA-NTLLVDLND--GGTESVT  134 (464)
T ss_dssp             ECCEECHHH----------HHHHHHHHHHHHHHHHHHHHHHTTCE--EECEEEEE-S--SS-SEEEEEETT--SCCEEEE
T ss_pred             CCCccCHHH----------HHHHHHHHHHHHHHHHHHHHHhCCCE--EEEeEEEE-e--cC-CeEEEEeCC--CceEEEE
Confidence            0   00000          0000    022334456667777777  77766543 2  22 445555432  2224799


Q ss_pred             EcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc--
Q 013303          155 FDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD--  232 (446)
Q Consensus       155 ~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~--  232 (446)
                      ||+||+|||  +.|+.|+++|.+.   .++++.+...... .+++|+|||+|.+|+|+|..|++.|.+|+++.+.+..  
T Consensus       135 ~d~lViAtG--~~~~~~~~~g~~~---~~~~~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  208 (464)
T 2a8x_A          135 FDNAIIATG--SSTRLVPGTSLSA---NVVTYEEQILSRE-LPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALP  208 (464)
T ss_dssp             EEEEEECCC--EEECCCTTCCCBT---TEECHHHHHTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             cCEEEECCC--CCCCCCCCCCCCc---eEEecHHHhhccc-cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCcccc
Confidence            999999999  7888898888654   2556555433322 4799999999999999999999999999999988641  


Q ss_pred             ---cc----c-ccCCCC-CCeeeccceeEEccCC-c--EEec-CC--cEEeecEEEEecCccCCCCCCC---------CC
Q 013303          233 ---ET----H-EKQPGY-DNMWLHSMVERANEDG-T--VVFR-NG--RVVSADVIMHCTGYKYNYPFLE---------TN  288 (446)
Q Consensus       233 ---~~----~-~~~~~~-~~v~~~~~v~~i~~~~-~--v~~~-dG--~~~~~D~vi~atG~~~~~~~l~---------~~  288 (446)
                         ..    + +.+.+. -++.....|.++..++ .  +.+. ||  +++++|.||+|+|++|+.++|.         +.
T Consensus       209 ~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~  288 (464)
T 2a8x_A          209 NEDADVSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDR  288 (464)
T ss_dssp             TSCHHHHHHHHHHHHHHTCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCEEECCSSSCHHHHTCCBCTT
T ss_pred             ccCHHHHHHHHHHHHHcCCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCCCccCCCCCchhcCCccCCC
Confidence               00    1 111111 2556667888887543 2  4554 67  5789999999999999998742         34


Q ss_pred             CeeeeCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcC
Q 013303          289 GIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSG  342 (446)
Q Consensus       289 g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g  342 (446)
                      |.|.+|++++          ++.|+||++|++... ...+.+..||+.+|.++.|
T Consensus       289 G~i~vd~~~~----------t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g  333 (464)
T 2a8x_A          289 KAIGVDDYMR----------TNVGHIYAIGDVNGLLQLAHVAEAQGVVAAETIAG  333 (464)
T ss_dssp             SSBCCCTTSB----------CSSTTEEECGGGGCSSCSHHHHHHHHHHHHHHHHT
T ss_pred             CCEeECcCCc----------cCCCCEEEeECcCCCccCHHHHHHHHHHHHHHhcC
Confidence            5677776655          558999999998653 3457789999999999998

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=99.97  E-value=4.5e-31  Score=262.17  Aligned_cols=272  Identities=17%  Similarity=0.159  Sum_probs=190.0

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCc--EEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCccc
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHT--VVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~--v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~   80 (446)
                      +||+|||||+||+++|..|++.|++  |+|||+++.++.....                     +        ++..+  
T Consensus        10 ~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~---------------------l--------~~~~~--   58 (415)
T 3lxd_A           10 ADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPP---------------------L--------SKEYL--   58 (415)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGG---------------------G--------GTTTT--
T ss_pred             CcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCccc---------------------C--------CHHHH--
Confidence            5899999999999999999999987  9999998754321100                     0        00000  


Q ss_pred             CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEE
Q 013303           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV  160 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVv  160 (446)
                         ...             ....++..+..++.++.+++  ++++++|+.+++..   ++|++.++.    ++.||+||+
T Consensus        59 ---~~~-------------~~~~~~~~~~~~~~~~~~i~--~~~~~~v~~id~~~---~~v~~~~g~----~~~~d~lvl  113 (415)
T 3lxd_A           59 ---ARE-------------KTFERICIRPAQFWEDKAVE--MKLGAEVVSLDPAA---HTVKLGDGS----AIEYGKLIW  113 (415)
T ss_dssp             ---TTS-------------SCSGGGBSSCHHHHHHTTEE--EEETCCEEEEETTT---TEEEETTSC----EEEEEEEEE
T ss_pred             ---cCC-------------CCHHHhccCCHHHHHHCCcE--EEeCCEEEEEECCC---CEEEECCCC----EEEeeEEEE
Confidence               000             00011112223445567777  88899999998643   677776553    789999999


Q ss_pred             ccCCCCCCccCCCCCCCCCCccEEEeeecCCCC-----CCC-CCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc--
Q 013303          161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN-----PFQ-DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD--  232 (446)
Q Consensus       161 AtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~-----~~~-~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~--  232 (446)
                      |||  +.|+.|++||.+. . .+.+.....+..     ... +++|+|||+|.+|+|+|..+++.+.+|+++.+.+..  
T Consensus       114 AtG--~~~~~~~i~g~~~-~-~v~~~~~~~d~~~l~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~  189 (415)
T 3lxd_A          114 ATG--GDPRRLSCVGADL-A-GVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLA  189 (415)
T ss_dssp             CCC--EECCCCBTTSSCC-B-TEECCCSHHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT
T ss_pred             ccC--CccCCCCCCCccc-c-CEEEEcCHHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhh
Confidence            999  8999999999763 1 122211111100     112 799999999999999999999999999999987741  


Q ss_pred             --------ccccc-CCCC-CCeeeccceeEEccCC----cEEecCCcEEeecEEEEecCccCCCCCCCCC-----Ceeee
Q 013303          233 --------ETHEK-QPGY-DNMWLHSMVERANEDG----TVVFRNGRVVSADVIMHCTGYKYNYPFLETN-----GIVTV  293 (446)
Q Consensus       233 --------~~~~~-~~~~-~~v~~~~~v~~i~~~~----~v~~~dG~~~~~D~vi~atG~~~~~~~l~~~-----g~i~~  293 (446)
                              +.+.+ +.+. .++.....|.++..++    .|.++||+++++|.||+|+|+.|+.+++...     +.|.+
T Consensus       190 ~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~gi~v  269 (415)
T 3lxd_A          190 RVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVPCVGALISAGASGGNGVDV  269 (415)
T ss_dssp             TTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCCEESCHHHHHTTCCCSSSEEC
T ss_pred             hhcCHHHHHHHHHHHHhCCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCCccChHHHHhCCCCcCCCEEE
Confidence                    01111 1112 2566678899987643    3788999999999999999999998765322     22667


Q ss_pred             CCCCcccccccccCCCCCCCeEEecCCCccCc------------hhHHHHHHHHHHHHHcCCC
Q 013303          294 DDNRVGPLYKHVFPPVLAPGLSFVGIPQKVIP------------FPFFELQSKWIASVLSGRI  344 (446)
Q Consensus       294 ~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~~------------~~~~~~qa~~~a~~l~g~~  344 (446)
                      |+..+          ++.|+||++|++.....            ++.+..||+.+|+++.|+.
T Consensus       270 d~~~~----------t~~~~iyA~GD~a~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~  322 (415)
T 3lxd_A          270 DEFCR----------TSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKDICGAP  322 (415)
T ss_dssp             CTTCB----------CSSTTEEECGGGEEEECGGGTTCEECCCSHHHHHHHHHHHHHHHTTCC
T ss_pred             CCCCC----------cCCCCEEEEEeeeeecCcccCCcceeechHHHHHHHHHHHHHHhcCCC
Confidence            76655          45899999998764322            4678999999999999863

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=99.97  E-value=1.6e-31  Score=270.39  Aligned_cols=288  Identities=16%  Similarity=0.159  Sum_probs=194.1

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d   82 (446)
                      +||+|||||++|+++|..|++.|++|+|||+ +.+||.|.+.        ||.|++.++.+........+       +..
T Consensus        27 ~DVvVIGgG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~~--------gcip~k~l~~~a~~~~~~~~-------~~~   90 (484)
T 3o0h_A           27 FDLFVIGSGSGGVRAARLAGALGKRVAIAEE-YRIGGTCVIR--------GCVPKKLYFYASQYAQEFSK-------SIG   90 (484)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHHHH--------SHHHHHHHHHHHHHHHHHHH-------HGG
T ss_pred             CCEEEECcCHHHHHHHHHHHhCcCEEEEEeC-CCCCCceecc--------CccccHHHHHHHHHHHHHHH-------HHh
Confidence            5999999999999999999999999999999 7899999864        55555433322211100000       111


Q ss_pred             CCCCcCCCCCCCCCCCCCCHH-----------HHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEE-eCCCce
Q 013303           83 YPFVARNYEGSVDLRRYPGHE-----------EVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSR-KKDDVV  150 (446)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~-----------~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~-~~~~~~  150 (446)
                      |.+...       . ......           .+..++....+..++.  +..+ ++..++     .+++.+. ++    
T Consensus        91 ~g~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g-~~~~i~-----~~~v~v~~~~----  150 (484)
T 3o0h_A           91 FGWKYA-------D-PIFNWEKLVAAKNKEISRLEGLYREGLQNSNVH--IYES-RAVFVD-----EHTLELSVTG----  150 (484)
T ss_dssp             GTBCCC-------C-CEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEES-CEEEEE-----TTEEEETTTC----
T ss_pred             CCcccC-------C-CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEe-EEEEee-----CCEEEEecCC----
Confidence            111100       0 011122           3334445555566665  4444 455543     2445553 22    


Q ss_pred             EEEEEcEEEEccCCCCCCc-cCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303          151 EEETFDAVVVCNGHFSVPR-LAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS  229 (446)
Q Consensus       151 ~~~~~d~VVvAtG~~s~p~-~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~  229 (446)
                      .++.||+||+|||  +.|. .|.+||.+.    +.++.++.... ..+++|+|||+|.+|+|+|..+++.+.+|+++.+.
T Consensus       151 ~~~~~d~lviAtG--~~p~~~p~i~G~~~----~~~~~~~~~~~-~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~  223 (484)
T 3o0h_A          151 ERISAEKILIATG--AKIVSNSAIKGSDL----CLTSNEIFDLE-KLPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRG  223 (484)
T ss_dssp             CEEEEEEEEECCC--EEECCC--CBTGGG----SBCTTTGGGCS-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             eEEEeCEEEEccC--CCcccCCCCCCccc----cccHHHHHhHH-hcCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECC
Confidence            3789999999999  8888 899999763    22333332222 34799999999999999999999999999999987


Q ss_pred             CC-----cc----cc-ccCCCC-CCeeeccceeEEccCC---cEEecCCcEEeecEEEEecCccCCCCCC---------C
Q 013303          230 VA-----DE----TH-EKQPGY-DNMWLHSMVERANEDG---TVVFRNGRVVSADVIMHCTGYKYNYPFL---------E  286 (446)
Q Consensus       230 ~~-----~~----~~-~~~~~~-~~v~~~~~v~~i~~~~---~v~~~dG~~~~~D~vi~atG~~~~~~~l---------~  286 (446)
                      +.     +.    .+ +.+.+. .++..+..|.++..++   .|.+.||+++++|.||+|+|++|+..+|         +
T Consensus       224 ~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~~  303 (484)
T 3o0h_A          224 DLILRNFDYDLRQLLNDAMVAKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVN  303 (484)
T ss_dssp             SSSSTTSCHHHHHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECCTTCCHHHHTCCBC
T ss_pred             CccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCCCcCCCCCChhhcCceEC
Confidence            64     00    01 111111 2556667888887653   3788899999999999999999999874         2


Q ss_pred             CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHcCC
Q 013303          287 TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       287 ~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~g~  343 (446)
                      +.|.|.+|+..+          ++.|+||++|++.. ....+.+..||+.+|+++.|.
T Consensus       304 ~~G~i~vd~~~~----------t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~  351 (484)
T 3o0h_A          304 EFGAVVVDEKMT----------TNVSHIWAVGDVTGHIQLTPVAIHDAMCFVKNAFEN  351 (484)
T ss_dssp             TTSCBCCCTTSB----------CSSTTEEECGGGGTSCCCHHHHHHHHHHHHHHHHC-
T ss_pred             CCCCEeECCCCC----------CCCCCEEEEEecCCCCcCHHHHHHHHHHHHHHHcCC
Confidence            445666666555          55899999999875 445578899999999999875

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=99.97  E-value=1.2e-30  Score=261.95  Aligned_cols=278  Identities=18%  Similarity=0.254  Sum_probs=191.5

Q ss_pred             CeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCccc
Q 013303            3 RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~   80 (446)
                      +||+|||||++|+++|..|++.  |.+|+|||+++.++.....                 +.  .|.      .. ..  
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~-----------------~~--~~~------~g-~~--   52 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCG-----------------IA--LYL------GK-EI--   52 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGGG-----------------HH--HHH------TT-CB--
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCccccc-----------------ch--hhh------cC-Cc--
Confidence            5899999999999999999998  9999999998755321100                 00  000      00 00  


Q ss_pred             CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEEE
Q 013303           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVV  159 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~VV  159 (446)
                      ..+.+                 +++..++.+..++++++  ++++++|..++... .  +|.+.+. +++..++.||+||
T Consensus        53 ~~~~~-----------------~~~~~~~~~~~~~~gv~--~~~~~~v~~i~~~~-~--~v~v~~~~~g~~~~~~~d~lv  110 (452)
T 2cdu_A           53 KNNDP-----------------RGLFYSSPEELSNLGAN--VQMRHQVTNVDPET-K--TIKVKDLITNEEKTEAYDKLI  110 (452)
T ss_dssp             GGGCG-----------------GGGBSCCHHHHHHTTCE--EEESEEEEEEEGGG-T--EEEEEETTTCCEEEEECSEEE
T ss_pred             ccCCH-----------------HHhhhcCHHHHHHcCCE--EEeCCEEEEEEcCC-C--EEEEEecCCCceEEEECCEEE
Confidence            00000                 00111123344567877  88899999998655 3  4555442 1223579999999


Q ss_pred             EccCCCCCCccCCCCCCCCCCccEEEeeecCCCCC-----CCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc--
Q 013303          160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNP-----FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD--  232 (446)
Q Consensus       160 vAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~-----~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~--  232 (446)
                      +|||  +.|+.|++||.+.  ..++++..+.+...     ..+++|+|||+|.+|+|+|..|++.+.+|+++.+.+..  
T Consensus       111 iAtG--s~p~~p~i~g~~~--~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  186 (452)
T 2cdu_A          111 MTTG--SKPTVPPIPGIDS--SRVYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLY  186 (452)
T ss_dssp             ECCC--EEECCCCCTTTTS--TTEEECSSHHHHHHHHHHGGGCSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTT
T ss_pred             EccC--CCcCCCCCCCCCC--CCEEEeCcHHHHHHHHHHhccCCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhh
Confidence            9999  8999999999863  23555443322211     25799999999999999999999999999999987641  


Q ss_pred             ----c----cc-ccCCCC-CCeeeccceeEEcc-CCcE--EecCCcEEeecEEEEecCccCCCCCCCC------CCeeee
Q 013303          233 ----E----TH-EKQPGY-DNMWLHSMVERANE-DGTV--VFRNGRVVSADVIMHCTGYKYNYPFLET------NGIVTV  293 (446)
Q Consensus       233 ----~----~~-~~~~~~-~~v~~~~~v~~i~~-~~~v--~~~dG~~~~~D~vi~atG~~~~~~~l~~------~g~i~~  293 (446)
                          .    .+ +.+.+. .++..+..|.++.. ++.+  ...||+++++|.||+|||++|+.++++.      .|.|.+
T Consensus       187 ~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~~v~~~g~~i~~D~vv~a~G~~p~~~ll~~~l~~~~~G~i~V  266 (452)
T 2cdu_A          187 KYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIGFRPNTELLKGKVAMLDNGAIIT  266 (452)
T ss_dssp             TTSCHHHHHHHHHHHHHTTCEEEESSCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECCGGGTTTSCBCTTSCBCC
T ss_pred             hhhhhhHHHHHHHHHHHCCCEEEcCCeeEEEEcCCCeEEEEEeCCCEEECCEEEECcCCCCCHHHHHHhhhcCCCCCEEE
Confidence                0    01 111122 25667788999875 4433  3458889999999999999999987642      345666


Q ss_pred             CCCCcccccccccCCCCCCCeEEecCCCcc-----------CchhHHHHHHHHHHHHHcCCC
Q 013303          294 DDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-----------IPFPFFELQSKWIASVLSGRI  344 (446)
Q Consensus       294 ~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-----------~~~~~~~~qa~~~a~~l~g~~  344 (446)
                      |++++          ++.|+||++|++...           ...+.+..||+.+|+++.|..
T Consensus       267 d~~~~----------t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  318 (452)
T 2cdu_A          267 DEYMH----------SSNRDIFAAGDSAAVHYNPTNSNAYIPLATNAVRQGRLVGLNLTEDK  318 (452)
T ss_dssp             CTTSB----------CSSTTEEECSTTBCEEETTTTEEECCCCHHHHHHHHHHHHHTSSSCC
T ss_pred             CCCcC----------cCCCCEEEcceEEEeccccCCCeeecchHHHHHHHHHHHHHHhCCCC
Confidence            65554          458999999998642           346788999999999999863

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.97  E-value=1.4e-30  Score=262.88  Aligned_cols=302  Identities=16%  Similarity=0.171  Sum_probs=201.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCC-ccCceeecCCCCCccc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF   80 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~-~y~~l~~~~~~~~~~~   80 (446)
                      ++||+|||||++|+++|..|++.|++|+|||+.+.+||.|...        ||.|++.++... .+..+..+.....+.+
T Consensus         6 ~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~--------g~~p~k~l~~~~~~~~~~~~~~~~~g~~~   77 (470)
T 1dxl_A            6 ENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNV--------GCIPSKALLHSSHMYHEAKHSFANHGVKV   77 (470)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHH--------SHHHHHHHHHHHHHHHHHHHTHHHHTEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccCc--------CccchHHHHHHHHHHHHHHHHHHhcCccc
Confidence            5799999999999999999999999999999998999999764        455543322111 1111100000000000


Q ss_pred             CCCCCCcCCCCCCCCCCCC-CCH----HHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEE
Q 013303           81 QAYPFVARNYEGSVDLRRY-PGH----EEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF  155 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~-~~~----~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~  155 (446)
                      ....++         ...+ ...    ..+.+.+..++++.+++  +++++.+. ++  . +.++|.+.++  ...++.|
T Consensus        78 ~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~~~~~gv~--~~~g~~~~-~~--~-~~~~v~~~~G--~~~~i~~  140 (470)
T 1dxl_A           78 SNVEID---------LAAMMGQKDKAVSNLTRGIEGLFKKNKVT--YVKGYGKF-VS--P-SEISVDTIEG--ENTVVKG  140 (470)
T ss_dssp             SCEEEC---------HHHHHHHHHHHHHHHHHHHHHHHHHHTCE--EEESCEEE-EE--T-TEEEECCSSS--CCEEEEC
T ss_pred             CCCccC---------HHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEeEEEE-ec--C-CEEEEEeCCC--ceEEEEc
Confidence            000000         0000 001    12334456667777887  78887654 43  2 4566654332  2247999


Q ss_pred             cEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc---
Q 013303          156 DAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD---  232 (446)
Q Consensus       156 d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~---  232 (446)
                      |+||+|||  +.|..|+++|.+.  ..++++.+...... .+++|+|||+|.+|+|+|..|++.+.+|+++.+.+..   
T Consensus       141 d~lIiAtG--s~p~~p~~~g~~~--~~v~~~~~~~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~  215 (470)
T 1dxl_A          141 KHIIIATG--SDVKSLPGVTIDE--KKIVSSTGALALSE-IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT  215 (470)
T ss_dssp             SEEEECCC--EEECCBTTBCCCS--SSEECHHHHTTCSS-CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT
T ss_pred             CEEEECCC--CCCCCCCCCCCCc--ccEEeHHHhhhhhh-cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc
Confidence            99999999  7899999988754  13566665544332 4799999999999999999999999999999988641   


Q ss_pred             --cc----c-ccCCCC-CCeeeccceeEEccCCc---EEec---CC--cEEeecEEEEecCccCCCCCC--CC-------
Q 013303          233 --ET----H-EKQPGY-DNMWLHSMVERANEDGT---VVFR---NG--RVVSADVIMHCTGYKYNYPFL--ET-------  287 (446)
Q Consensus       233 --~~----~-~~~~~~-~~v~~~~~v~~i~~~~~---v~~~---dG--~~~~~D~vi~atG~~~~~~~l--~~-------  287 (446)
                        ..    + +.+.+. .++.....|.++..++.   +.+.   ||  +++++|.||+|+|++|+.++|  +.       
T Consensus       216 ~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~  295 (470)
T 1dxl_A          216 MDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDK  295 (470)
T ss_dssp             SCHHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCCCEEECCTTSCCTTTTCCBCS
T ss_pred             ccHHHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECCCCCcCCCCCCchhcCCccCC
Confidence              11    1 111122 25666778999976542   4554   55  678999999999999999873  33       


Q ss_pred             CCeeeeCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCC
Q 013303          288 NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       288 ~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~  343 (446)
                      .|.|.+|++++          ++.|+||++|++... ...+.+..||+.+|.++.|.
T Consensus       296 ~G~i~vd~~~~----------t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~  342 (470)
T 1dxl_A          296 LGRILVNERFS----------TNVSGVYAIGDVIPGPMLAHKAEEDGVACVEYLAGK  342 (470)
T ss_dssp             SSCBCCCTTCB----------CSSTTEEECSTTSSSCCCHHHHHHHHHHHHHHHTTS
T ss_pred             CCCEeECcCCc----------cCCCCEEEEeccCCCCccHHHHHHHHHHHHHHHcCC
Confidence            24455555443          458999999998653 34577899999999999985

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.97  E-value=2.7e-31  Score=266.89  Aligned_cols=294  Identities=15%  Similarity=0.198  Sum_probs=195.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCC-ccCceeecCCC-CCcc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPR-ELMG   79 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~-~y~~l~~~~~~-~~~~   79 (446)
                      ++||+|||||+||+++|..|++.|++|+|||+ +.+||+|.+.        ||.|++.++.+. .+..+. +... ..++
T Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-~~~GG~~~~~--------g~~Psk~l~~~~~~~~~~~-~~~~~~~~g   74 (458)
T 1lvl_A            5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCLNI--------GCIPSKALIHVAEQFHQAS-RFTEPSPLG   74 (458)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHHHHH--------SHHHHHHHHHHHHHHHHHH-HTTSCCTTC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEcc-CCCCCcCCCc--------CcHhHHHHHHHHHHHHHHh-hcccccccC
Confidence            47999999999999999999999999999999 7899999864        566655433221 222221 1110 0001


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCCHHHHHHH-----------HHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCC
Q 013303           80 FQAYPFVARNYEGSVDLRRYPGHEEVLRY-----------LQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDD  148 (446)
Q Consensus        80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~y-----------l~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~  148 (446)
                         +++.          ....+..++..+           +.++.++.+++  +..++.+. ++     .++|++.+   
T Consensus        75 ---~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g~~~~-~~-----~~~v~v~~---  130 (458)
T 1lvl_A           75 ---ISVA----------SPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVK--VVHGWAKV-LD-----GKQVEVDG---  130 (458)
T ss_dssp             ---CCCC----------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EECSCEEE-EE-----TTEEEETT---
T ss_pred             ---cccC----------CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcE--EEEEEEEE-cc-----CCEEEEee---
Confidence               1110          011223333333           34556667777  77666543 32     25565532   


Q ss_pred             ceEEEEEcEEEEccCCCCCCccCC-CCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEE
Q 013303          149 VVEEETFDAVVVCNGHFSVPRLAQ-VPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIAS  227 (446)
Q Consensus       149 ~~~~~~~d~VVvAtG~~s~p~~p~-i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~  227 (446)
                        .++.||+||+|||  +.|+.|+ +| .+   +.++++.++..... .+++|+|||+|.+|+|+|..|++.|.+|+++.
T Consensus       131 --~~~~~d~lviATG--s~p~~~~~~~-~~---~~v~~~~~~~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~  201 (458)
T 1lvl_A          131 --QRIQCEHLLLATG--SSSVELPMLP-LG---GPVISSTEALAPKA-LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVE  201 (458)
T ss_dssp             --EEEECSEEEECCC--EEECCBTTBC-CB---TTEECHHHHTCCSS-CCSEEEEECCSHHHHHHHHHHHHHTCEEEEEC
T ss_pred             --EEEEeCEEEEeCC--CCCCCCCCCC-cc---CcEecHHHHhhhhc-cCCeEEEECcCHHHHHHHHHHHHCCCeEEEEE
Confidence              3789999999999  7887775 55 22   24667766655433 57999999999999999999999999999999


Q ss_pred             ecCCc-----cc----c-ccCCCC-CCeeeccceeEEccCCcEEec--CC--cEEeecEEEEecCccCCCCCC--CCCCe
Q 013303          228 RSVAD-----ET----H-EKQPGY-DNMWLHSMVERANEDGTVVFR--NG--RVVSADVIMHCTGYKYNYPFL--ETNGI  290 (446)
Q Consensus       228 r~~~~-----~~----~-~~~~~~-~~v~~~~~v~~i~~~~~v~~~--dG--~~~~~D~vi~atG~~~~~~~l--~~~g~  290 (446)
                      +.+..     ..    + +.+.+. -++..+..|.++.. +.+.+.  +|  +++++|.||+|||++|+.+++  +..| 
T Consensus       202 ~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~-~~v~v~~~~G~~~~i~~D~vv~a~G~~p~~~~l~~~~~g-  279 (458)
T 1lvl_A          202 ARERILPTYDSELTAPVAESLKKLGIALHLGHSVEGYEN-GCLLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLD-  279 (458)
T ss_dssp             SSSSSSTTSCHHHHHHHHHHHHHHTCEEETTCEEEEEET-TEEEEECSSSCCCEECCSCEEECCCEEECCSSSSGGGSC-
T ss_pred             cCCccccccCHHHHHHHHHHHHHCCCEEEECCEEEEEEe-CCEEEEECCCceEEEECCEEEECcCCCcCCCCCCcHhcC-
Confidence            87641     00    1 111111 24556678888876 445554  67  579999999999999999874  3323 


Q ss_pred             eeeCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCC
Q 013303          291 VTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       291 i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~  343 (446)
                      +.+++. ...... .+. ++.|+||++|++... ...+.+..||+.+|.++.|.
T Consensus       280 ~~~~~~-~i~vd~-~~~-t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~  330 (458)
T 1lvl_A          280 LKMNGA-AIAIDE-RCQ-TSMHNVWAIGDVAGEPMLAHRAMAQGEMVAEIIAGK  330 (458)
T ss_dssp             CCEETT-EECCCT-TCB-CSSTTEEECGGGGCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred             CcccCC-EEeECC-CCc-CCCCCEEEeeccCCCcccHHHHHHHHHHHHHHhcCC
Confidence            333332 111211 223 458999999988643 34577899999999999985

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.97  E-value=9e-32  Score=262.38  Aligned_cols=265  Identities=21%  Similarity=0.261  Sum_probs=185.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      ..||+|||||+||++||..|++.| +|+|||+++..+    +.             +..++    ..+        .+. 
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~----~~-------------~~~l~----~~~--------~g~-   56 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPY----YS-------------KPMLS----HYI--------AGF-   56 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCC----CC-------------STTHH----HHH--------TTS-
T ss_pred             CCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCc----cc-------------cchhH----HHH--------hCC-
Confidence            358999999999999999999999 999999976431    10             00000    000        000 


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                       .++                 +++..+..++.++++++  ++++++|+.+++.   .++|+ .++.    ++.||+||||
T Consensus        57 -~~~-----------------~~~~~~~~~~~~~~~v~--~~~g~~v~~id~~---~~~V~-~~g~----~~~~d~lViA  108 (367)
T 1xhc_A           57 -IPR-----------------NRLFPYSLDWYRKRGIE--IRLAEEAKLIDRG---RKVVI-TEKG----EVPYDTLVLA  108 (367)
T ss_dssp             -SCG-----------------GGGCSSCHHHHHHHTEE--EECSCCEEEEETT---TTEEE-ESSC----EEECSEEEEC
T ss_pred             -CCH-----------------HHhccCCHHHHHhCCcE--EEECCEEEEEECC---CCEEE-ECCc----EEECCEEEEC
Confidence             011                 11111223445567876  8888899999864   37777 4443    7999999999


Q ss_pred             cCCCCCCccCCCCCCCCCCccEEEeeecCCCCCC-----CCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc----
Q 013303          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPF-----QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD----  232 (446)
Q Consensus       162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~-----~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~----  232 (446)
                      ||  +.|+.|++||.+    .+++...+.+...+     .+++|+|||+|.+|+|+|..|++.|.+|+++.+.+..    
T Consensus       109 TG--s~p~~p~i~G~~----~v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~  182 (367)
T 1xhc_A          109 TG--ARAREPQIKGKE----YLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLGLD  182 (367)
T ss_dssp             CC--EEECCCCSBTGG----GEECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTTCC
T ss_pred             CC--CCCCCCCCCCcC----CEEEEcCHHHHHHHHHHhhcCCcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeeccCC
Confidence            99  899999999832    24444333222211     3589999999999999999999999999999987641    


Q ss_pred             c----cc-ccCCCCC-CeeeccceeEEccCCcEEecCCcEEeecEEEEecCccCCCCCCCCC-----CeeeeCCCCcccc
Q 013303          233 E----TH-EKQPGYD-NMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLETN-----GIVTVDDNRVGPL  301 (446)
Q Consensus       233 ~----~~-~~~~~~~-~v~~~~~v~~i~~~~~v~~~dG~~~~~D~vi~atG~~~~~~~l~~~-----g~i~~~~~~~~~l  301 (446)
                      .    .+ +.+.+.+ ++.....|.++.. ..|.++||+ +++|.||+|+|++|+.++++..     +.|.+|+.++   
T Consensus       183 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~-~~v~~~~g~-i~~D~vi~a~G~~p~~~ll~~~gl~~~~gi~Vd~~~~---  257 (367)
T 1xhc_A          183 EELSNMIKDMLEETGVKFFLNSELLEANE-EGVLTNSGF-IEGKVKICAIGIVPNVDLARRSGIHTGRGILIDDNFR---  257 (367)
T ss_dssp             HHHHHHHHHHHHHTTEEEECSCCEEEECS-SEEEETTEE-EECSCEEEECCEEECCHHHHHTTCCBSSSEECCTTSB---
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEe-eEEEECCCE-EEcCEEEECcCCCcCHHHHHhCCCCCCCCEEECCCcc---
Confidence            0    01 1111122 4556678899874 359999998 9999999999999998765322     2266666554   


Q ss_pred             cccccCCCCCCCeEEecCCCcc-----CchhHHHHHHHHHHHHHcCC
Q 013303          302 YKHVFPPVLAPGLSFVGIPQKV-----IPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       302 ~~~~~~~~~~p~l~~iG~~~~~-----~~~~~~~~qa~~~a~~l~g~  343 (446)
                             ++.|+||++|++...     ...+.+..||+.+|+++.|.
T Consensus       258 -------t~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~g~  297 (367)
T 1xhc_A          258 -------TSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADILKGE  297 (367)
T ss_dssp             -------CSSTTEEECGGGEEBTTBCCCSHHHHHHHHHHHHHHHTTC
T ss_pred             -------cCCCCEEEeEeeeecCCCCccHHHHHHHHHHHHHHHhcCC
Confidence                   458999999988531     34578899999999999985

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=99.97  E-value=1.4e-30  Score=260.97  Aligned_cols=276  Identities=21%  Similarity=0.249  Sum_probs=189.9

Q ss_pred             CeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCccc
Q 013303            3 RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~   80 (446)
                      +||+|||||+||+++|..|++.  |.+|+|||+++.+|.. ...                +  ..|      ...     
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~-~~~----------------~--~~~------~~~-----   50 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFL-SAG----------------M--QLY------LEG-----   50 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBC-GGG----------------H--HHH------HTT-----
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcc-ccc----------------c--hhh------hcC-----
Confidence            5899999999999999999998  8999999998765411 000                0  000      000     


Q ss_pred             CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEe-CCCceEEEEEcEEE
Q 013303           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRK-KDDVVEEETFDAVV  159 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~-~~~~~~~~~~d~VV  159 (446)
                       .++                ..+++..++.+..++++++  ++++++|..++...   .+|++.+ ..++..++.||+||
T Consensus        51 -~~~----------------~~~~~~~~~~~~~~~~gv~--~~~~~~v~~i~~~~---~~v~~~~~~~g~~~~~~~d~lv  108 (447)
T 1nhp_A           51 -KVK----------------DVNSVRYMTGEKMESRGVN--VFSNTEITAIQPKE---HQVTVKDLVSGEERVENYDKLI  108 (447)
T ss_dssp             -SSC----------------CGGGSBSCCHHHHHHTTCE--EEETEEEEEEETTT---TEEEEEETTTCCEEEEECSEEE
T ss_pred             -ccC----------------CHHHhhcCCHHHHHHCCCE--EEECCEEEEEeCCC---CEEEEEecCCCceEEEeCCEEE
Confidence             000                0011111223344566776  88899999998654   3555554 22333468999999


Q ss_pred             EccCCCCCCccCCCCCCCCCCccEEEeeecCCC-------CCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc
Q 013303          160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIP-------NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD  232 (446)
Q Consensus       160 vAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~-------~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~  232 (446)
                      +|||  +.|..|++||.+. . .++++..+.+.       ....+++|+|||+|.+|+|+|..|++.|.+|+++.+.+..
T Consensus       109 iAtG--~~p~~p~i~G~~~-~-~v~~~~~~~~~~~l~~~~~~~~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  184 (447)
T 1nhp_A          109 ISPG--AVPFELDIPGKDL-D-NIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP  184 (447)
T ss_dssp             ECCC--EEECCCCSTTTTS-B-SEECCCHHHHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             EcCC--CCcCCCCCCCCCC-C-CeEEECCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCccc
Confidence            9999  8899999999863 2 35554433221       1125799999999999999999999999999999987641


Q ss_pred             ------c----cc-ccCCCCC-CeeeccceeEEccCCcE--EecCCcEEeecEEEEecCccCCCCCCCC------CCeee
Q 013303          233 ------E----TH-EKQPGYD-NMWLHSMVERANEDGTV--VFRNGRVVSADVIMHCTGYKYNYPFLET------NGIVT  292 (446)
Q Consensus       233 ------~----~~-~~~~~~~-~v~~~~~v~~i~~~~~v--~~~dG~~~~~D~vi~atG~~~~~~~l~~------~g~i~  292 (446)
                            .    .+ +.+.+.+ ++..+..|.++..++.+  ...+|+++++|.||+|||++|+.++++.      .|.|.
T Consensus       185 l~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~v~~v~~~~~~i~~d~vi~a~G~~p~~~~~~~~~~~~~~G~i~  264 (447)
T 1nhp_A          185 LGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVTDKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIK  264 (447)
T ss_dssp             TTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECSSBCCEEEESSCEEECSEEEECSCEEESCGGGTTTSCBCTTSCBC
T ss_pred             ccccCCHHHHHHHHHHHHhCCCEEEcCCEEEEEEccCcEEEEEECCCEEECCEEEECcCCCCChHHHHhhhhhcCCCcEE
Confidence                  0    01 1111222 45566788998765432  3347788999999999999999887643      34456


Q ss_pred             eCCCCcccccccccCCCCCCCeEEecCCCcc-----------CchhHHHHHHHHHHHHHcCCC
Q 013303          293 VDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-----------IPFPFFELQSKWIASVLSGRI  344 (446)
Q Consensus       293 ~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-----------~~~~~~~~qa~~~a~~l~g~~  344 (446)
                      +|++++          ++.|+||++|++...           ...+.+..||+.+|.++.|..
T Consensus       265 Vd~~~~----------t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~  317 (447)
T 1nhp_A          265 TDEYMR----------TSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPV  317 (447)
T ss_dssp             CCTTCB----------CSSTTEEECGGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSSSCC
T ss_pred             ECcccc----------CCCCCEEEeeeEEEeeccCCCCceechhHHHHHHHHHHHHHhhcCCC
Confidence            665544          458999999987642           245788999999999999853

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=99.97  E-value=7.9e-31  Score=259.54  Aligned_cols=266  Identities=16%  Similarity=0.147  Sum_probs=187.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC--cEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG   79 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~--~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~   79 (446)
                      .+||+|||||++|+++|..|++.|.  +|+|||+++.++.....                  .+..+   ...       
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~------------------~~~~~---~~~-------   58 (408)
T 2gqw_A            7 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPP------------------LSKDF---MAH-------   58 (408)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGG------------------GGTHH---HHH-------
T ss_pred             CCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccCCC------------------CCHHH---hCC-------
Confidence            4799999999999999999999997  59999997654210000                  00000   000       


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEE
Q 013303           80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV  159 (446)
Q Consensus        80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VV  159 (446)
                        ..  ...         .         ++. ..++++++  ++++++|+.+++.   .++|++.++.    ++.||+||
T Consensus        59 --~~--~~~---------~---------~~~-~~~~~~v~--~~~~~~v~~i~~~---~~~v~~~~g~----~~~~d~lv  106 (408)
T 2gqw_A           59 --GD--AEK---------I---------RLD-CKRAPEVE--WLLGVTAQSFDPQ---AHTVALSDGR----TLPYGTLV  106 (408)
T ss_dssp             --CC--GGG---------S---------BCC-CTTSCSCE--EEETCCEEEEETT---TTEEEETTSC----EEECSEEE
T ss_pred             --Cc--hhh---------h---------hHH-HHHHCCCE--EEcCCEEEEEECC---CCEEEECCCC----EEECCEEE
Confidence              00  000         0         000 12345665  8889999999864   3778775543    78999999


Q ss_pred             EccCCCCCCccCCC-CCCCCCCccEEEeeecCCC-----CCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc-
Q 013303          160 VCNGHFSVPRLAQV-PGIDSWPGKQMHSHNYRIP-----NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD-  232 (446)
Q Consensus       160 vAtG~~s~p~~p~i-~G~~~~~g~~~hs~~~~~~-----~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~-  232 (446)
                      +|||  +.|+.|++ ||.+  .+ +.+.....+.     ....+++|+|||+|.+|+|+|..|++.|.+|+++.+.+.. 
T Consensus       107 iAtG--~~~~~~~i~~G~~--~~-v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  181 (408)
T 2gqw_A          107 LATG--AAPRALPTLQGAT--MP-VHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLM  181 (408)
T ss_dssp             ECCC--EEECCCGGGTTCS--SC-EEECCSHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS
T ss_pred             ECCC--CCCCCCCccCCCC--Cc-EEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccc
Confidence            9999  78999998 9976  22 3333222111     1124799999999999999999999999999999987641 


Q ss_pred             -----cc----c-ccCCCC-CCeeeccceeEEccCCcEEecCCcEEeecEEEEecCccCCCCCCCC------CCeeeeCC
Q 013303          233 -----ET----H-EKQPGY-DNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLET------NGIVTVDD  295 (446)
Q Consensus       233 -----~~----~-~~~~~~-~~v~~~~~v~~i~~~~~v~~~dG~~~~~D~vi~atG~~~~~~~l~~------~g~i~~~~  295 (446)
                           ..    + +.+.+. -++..+..|.++. ++.|+++||+++++|.||+|+|++|+.+++..      .| |.+|+
T Consensus       182 ~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~-~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~gl~~~~g-i~Vd~  259 (408)
T 2gqw_A          182 SRAAPATLADFVARYHAAQGVDLRFERSVTGSV-DGVVLLDDGTRIAADMVVVGIGVLANDALARAAGLACDDG-IFVDA  259 (408)
T ss_dssp             TTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEE-TTEEEETTSCEEECSEEEECSCEEECCHHHHHHTCCBSSS-EECCT
T ss_pred             ccccCHHHHHHHHHHHHHcCcEEEeCCEEEEEE-CCEEEECCCCEEEcCEEEECcCCCccHHHHHhCCCCCCCC-EEECC
Confidence                 00    1 111122 2566677899997 45799999999999999999999999876532      34 66776


Q ss_pred             CCcccccccccCCCCCCCeEEecCCCccC-----------chhHHHHHHHHHHHHHcCCC
Q 013303          296 NRVGPLYKHVFPPVLAPGLSFVGIPQKVI-----------PFPFFELQSKWIASVLSGRI  344 (446)
Q Consensus       296 ~~~~~l~~~~~~~~~~p~l~~iG~~~~~~-----------~~~~~~~qa~~~a~~l~g~~  344 (446)
                      +.+          ++.|+||++|++....           ....+..||+.+|+++.|..
T Consensus       260 ~~~----------t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~  309 (408)
T 2gqw_A          260 YGR----------TTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVDPT  309 (408)
T ss_dssp             TCB----------CSSTTEEECGGGEEEEETTTTEEECCCCHHHHHHHHHHHHHHHHCTT
T ss_pred             CCc----------cCCCCEEEEEEEEEecCccCCceeeccHHHHHHHHHHHHHHHhcCCC
Confidence            655          4589999999886432           34678999999999999864

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=99.97  E-value=2e-30  Score=256.59  Aligned_cols=271  Identities=16%  Similarity=0.188  Sum_probs=187.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC--cEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG   79 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~--~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~   79 (446)
                      +++|+|||||+||+++|..|++.|+  +|+|||+++..+..-..                     +        ++..+.
T Consensus         1 ~k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~---------------------l--------~~~~l~   51 (404)
T 3fg2_P            1 NDTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPP---------------------L--------SKAYLK   51 (404)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGG---------------------G--------GTGGGG
T ss_pred             CCCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCcc---------------------C--------CHHHHC
Confidence            4799999999999999999999998  89999998744211000                     0        000000


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEE
Q 013303           80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV  159 (446)
Q Consensus        80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VV  159 (446)
                      . +...           .      ++..+..++..+.+++  ++. ++|+.+++..   .+|++.++.    ++.||+||
T Consensus        52 ~-~~~~-----------~------~~~~~~~~~~~~~~i~--~~~-~~v~~id~~~---~~v~~~~g~----~~~~d~lv  103 (404)
T 3fg2_P           52 S-GGDP-----------N------SLMFRPEKFFQDQAIE--LIS-DRMVSIDREG---RKLLLASGT----AIEYGHLV  103 (404)
T ss_dssp             S-CCCT-----------T------SSBSSCHHHHHHTTEE--EEC-CCEEEEETTT---TEEEESSSC----EEECSEEE
T ss_pred             C-CCCH-----------H------HccCCCHHHHHhCCCE--EEE-EEEEEEECCC---CEEEECCCC----EEECCEEE
Confidence            0 0000           0      0011122344556776  666 8999998654   567776654    78999999


Q ss_pred             EccCCCCCCccCCCCCCCCCCccEEEeeecCC-----CCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc--
Q 013303          160 VCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRI-----PNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD--  232 (446)
Q Consensus       160 vAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~-----~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~--  232 (446)
                      +|||  +.|+.|++||.+. . .+++.....+     .....+++|+|||+|.+|+|+|..+++.+.+|+++.+.+..  
T Consensus       104 lAtG--~~p~~~~i~g~~~-~-~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~  179 (404)
T 3fg2_P          104 LATG--ARNRMLDVPNASL-P-DVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMA  179 (404)
T ss_dssp             ECCC--EEECCCCSTTTTS-T-TEECCSSHHHHHHHHHHGGGCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT
T ss_pred             EeeC--CCccCCCCCCCCC-C-cEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchh
Confidence            9999  7899999999753 1 2222111111     11125799999999999999999999999999999987641  


Q ss_pred             --------ccccc-CCCC-CCeeeccceeEEccCC----cEEecCCcEEeecEEEEecCccCCCCCCCC------CCeee
Q 013303          233 --------ETHEK-QPGY-DNMWLHSMVERANEDG----TVVFRNGRVVSADVIMHCTGYKYNYPFLET------NGIVT  292 (446)
Q Consensus       233 --------~~~~~-~~~~-~~v~~~~~v~~i~~~~----~v~~~dG~~~~~D~vi~atG~~~~~~~l~~------~g~i~  292 (446)
                              +.+.+ +.+. .++.....|.++..++    .|.++||+++++|.||+|||+.|+.+++..      .| |.
T Consensus       180 ~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~G-i~  258 (404)
T 3fg2_P          180 RVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGVIPNVEIAAAAGLPTAAG-II  258 (404)
T ss_dssp             TTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCCEEECCHHHHHTTCCBSSS-EE
T ss_pred             hccCHHHHHHHHHHHHhCCcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcCCccCHHHHHhCCCCCCCC-EE
Confidence                    01111 1111 2555667888887542    378899999999999999999999876532      33 66


Q ss_pred             eCCCCcccccccccCCCCCCCeEEecCCCccCc-----------hhHHHHHHHHHHHHHcCCC
Q 013303          293 VDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVIP-----------FPFFELQSKWIASVLSGRI  344 (446)
Q Consensus       293 ~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~~-----------~~~~~~qa~~~a~~l~g~~  344 (446)
                      +|+..+          ++.|+||++|++.....           ++.+..||+.+|+++.|+.
T Consensus       259 vd~~~~----------t~~~~iya~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~  311 (404)
T 3fg2_P          259 VDQQLL----------TSDPHISAIGDCALFESVRFGETMRVESVQNATDQARCVAARLTGDA  311 (404)
T ss_dssp             ECTTSB----------CSSTTEEECGGGEEEEETTTTEEECCCSHHHHHHHHHHHHHHTTTCC
T ss_pred             ECCCcc----------cCCCCEEEeecceeecCccCCceeeehHHHHHHHHHHHHHHHhCCCC
Confidence            776655          45899999998864322           5778999999999999864

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=99.96  E-value=3e-30  Score=260.72  Aligned_cols=276  Identities=19%  Similarity=0.220  Sum_probs=188.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG   79 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~   79 (446)
                      ++||+|||||++|+++|..|++.  |.+|+|||+.+..++....                 ++  .+      ...    
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~-----------------~~--~~------~~~----   86 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCG-----------------LP--YV------ISG----   86 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGG-----------------HH--HH------HTT----
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCC-----------------cc--hh------hcC----
Confidence            46999999999999999999996  8999999998765421110                 00  00      000    


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCCHHHHH-HHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEe-CCCceEEEEEcE
Q 013303           80 FQAYPFVARNYEGSVDLRRYPGHEEVL-RYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRK-KDDVVEEETFDA  157 (446)
Q Consensus        80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~-~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~-~~~~~~~~~~d~  157 (446)
                        ..+                ..+++. .+...+.++++++  ++++++|..++... .  +|++.+ .+++..++.||+
T Consensus        87 --~~~----------------~~~~l~~~~~~~~~~~~gv~--~~~~~~v~~i~~~~-~--~v~v~~~~~g~~~~~~~d~  143 (480)
T 3cgb_A           87 --AIA----------------STEKLIARNVKTFRDKYGID--AKVRHEVTKVDTEK-K--IVYAEHTKTKDVFEFSYDR  143 (480)
T ss_dssp             --SSS----------------CGGGGBSSCHHHHHHTTCCE--EESSEEEEEEETTT-T--EEEEEETTTCCEEEEECSE
T ss_pred             --CcC----------------CHHHhhhcCHHHHHhhcCCE--EEeCCEEEEEECCC-C--EEEEEEcCCCceEEEEcCE
Confidence              000                001111 1133444566877  88899999998654 3  455544 223334789999


Q ss_pred             EEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCC-------CCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          158 VVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN-------PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       158 VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~-------~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      ||+|||  +.|+.|++||.+. . .+++...+.+..       ...+++|+|||+|.+|+|+|..|++.+.+|+++.+.+
T Consensus       144 lviAtG--~~p~~p~i~G~~~-~-~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~  219 (480)
T 3cgb_A          144 LLIATG--VRPVMPEWEGRDL-Q-GVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERND  219 (480)
T ss_dssp             EEECCC--EEECCCCCBTTTS-B-TEECCSSHHHHHHHHHHHHSSCCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGG
T ss_pred             EEECCC--CcccCCCCCCccC-C-CEEEeCCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCC
Confidence            999999  8899999999863 2 244433222111       1267999999999999999999999999999999876


Q ss_pred             Cc-----c----cc-ccCCCC-CCeeeccceeEEccCCcE--EecCCcEEeecEEEEecCccCCCCCCCCC-------Ce
Q 013303          231 AD-----E----TH-EKQPGY-DNMWLHSMVERANEDGTV--VFRNGRVVSADVIMHCTGYKYNYPFLETN-------GI  290 (446)
Q Consensus       231 ~~-----~----~~-~~~~~~-~~v~~~~~v~~i~~~~~v--~~~dG~~~~~D~vi~atG~~~~~~~l~~~-------g~  290 (446)
                      ..     .    .+ +.+.+. .++.....|.++..++.+  ...++.++++|.||+|+|+.|+.+++...       |.
T Consensus       220 ~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~v~~v~~~~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~~~G~  299 (480)
T 3cgb_A          220 HIGTIYDGDMAEYIYKEADKHHIEILTNENVKAFKGNERVEAVETDKGTYKADLVLVSVGVKPNTDFLEGTNIRTNHKGA  299 (480)
T ss_dssp             GTTSSSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSBEEEEEETTEEEECSEEEECSCEEESCGGGTTSCCCBCTTSC
T ss_pred             chhhcCCHHHHHHHHHHHHHcCcEEEcCCEEEEEEcCCcEEEEEECCCEEEcCEEEECcCCCcChHHHHhCCcccCCCCC
Confidence            41     0    01 111112 245667788888766543  33456689999999999999998876543       34


Q ss_pred             eeeCCCCcccccccccCCCCCCCeEEecCCCcc-----------CchhHHHHHHHHHHHHHcCC
Q 013303          291 VTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-----------IPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       291 i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-----------~~~~~~~~qa~~~a~~l~g~  343 (446)
                      |.+|++++          ++.|+||++|++...           ...+.+..||+.+|+++.|.
T Consensus       300 I~Vd~~~~----------ts~p~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~  353 (480)
T 3cgb_A          300 IEVNAYMQ----------TNVQDVYAAGDCATHYHVIKEIHDHIPIGTTANKQGRLAGLNMLDK  353 (480)
T ss_dssp             BCCCTTSB----------CSSTTEEECGGGBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHTTC
T ss_pred             EEECCCcc----------CCCCCEEEeeeEEEecCCCCCcceecchHHHHHHHHHHHHHHhcCC
Confidence            55555443          458999999988632           23578899999999999985

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=99.96  E-value=4.4e-30  Score=252.39  Aligned_cols=269  Identities=14%  Similarity=0.196  Sum_probs=191.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCC--CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG   79 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g--~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~   79 (446)
                      ++||+|||||+||+++|..|++.|  .+|+++|++.  |..|...               .++. .              
T Consensus         4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~--g~~~~~~---------------~l~~-~--------------   51 (384)
T 2v3a_A            4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD--GRSYSKP---------------MLST-G--------------   51 (384)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC--CCEECGG---------------GGGG-T--------------
T ss_pred             CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC--CCccCcc---------------cccH-H--------------
Confidence            479999999999999999999998  5689999864  4333321               0000 0              


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCCHHHHH-HHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEE
Q 013303           80 FQAYPFVARNYEGSVDLRRYPGHEEVL-RYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV  158 (446)
Q Consensus        80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~-~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~V  158 (446)
                         ++             ......++. .++..++++++++  ++++++|..++...   ++|++.+     .++.||+|
T Consensus        52 ---~~-------------~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~---~~v~~~~-----~~~~~d~l  105 (384)
T 2v3a_A           52 ---FS-------------KNKDADGLAMAEPGAMAEQLNAR--ILTHTRVTGIDPGH---QRIWIGE-----EEVRYRDL  105 (384)
T ss_dssp             ---TT-------------TTCCHHHHEEECHHHHHHHTTCE--EECSCCCCEEEGGG---TEEEETT-----EEEECSEE
T ss_pred             ---Hh-------------CCCCHHHhhccCHHHHHHhCCcE--EEeCCEEEEEECCC---CEEEECC-----cEEECCEE
Confidence               00             001223443 3567777788887  88889999988643   6676632     26899999


Q ss_pred             EEccCCCCCCccCCCCCCCCCCccEEEeeecCCCC-----CCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC--
Q 013303          159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPN-----PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA--  231 (446)
Q Consensus       159 VvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~-----~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~--  231 (446)
                      |+|||  +.|..|++||.+.  ..++++..+.+..     ...+++|+|||+|.+|+|+|..|++.+.+|+++.+.+.  
T Consensus       106 viAtG--~~p~~p~i~g~~~--~~v~~~~~~~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~  181 (384)
T 2v3a_A          106 VLAWG--AEPIRVPVEGDAQ--DALYPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVM  181 (384)
T ss_dssp             EECCC--EEECCCCCBSTTT--TCEEECSSHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS
T ss_pred             EEeCC--CCcCCCCCCCcCc--CCEEEECCHHHHHHHHHhhccCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchh
Confidence            99999  8999999998753  2355544432211     12479999999999999999999999999999998764  


Q ss_pred             ----cc----cc-ccCCCC-CCeeeccceeEEccCC---cEEecCCcEEeecEEEEecCccCCCCCCCC------CCeee
Q 013303          232 ----DE----TH-EKQPGY-DNMWLHSMVERANEDG---TVVFRNGRVVSADVIMHCTGYKYNYPFLET------NGIVT  292 (446)
Q Consensus       232 ----~~----~~-~~~~~~-~~v~~~~~v~~i~~~~---~v~~~dG~~~~~D~vi~atG~~~~~~~l~~------~g~i~  292 (446)
                          +.    .+ +.+.+. ..+.....|.++..++   .+.+.||+++++|.||+|+|+.|+.+++..      .| |.
T Consensus       182 ~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~~p~~~l~~~~g~~~~~g-i~  260 (384)
T 2v3a_A          182 PGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRPRTELAFAAGLAVNRG-IV  260 (384)
T ss_dssp             TTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECCHHHHHTTCCBSSS-EE
T ss_pred             hcccCHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCCCcCHHHHHHCCCCCCCC-EE
Confidence                10    11 111122 2566677888886533   277889999999999999999999876432      34 66


Q ss_pred             eCCCCcccccccccCCCCCCCeEEecCCCc--cC---chhHHHHHHHHHHHHHcCC
Q 013303          293 VDDNRVGPLYKHVFPPVLAPGLSFVGIPQK--VI---PFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       293 ~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~--~~---~~~~~~~qa~~~a~~l~g~  343 (446)
                      +|++.+          ++.|+||++|++..  ..   ....+..||+.+|+++.|.
T Consensus       261 vd~~~~----------t~~~~IyA~GD~~~~~~~~~~~~~~a~~~g~~~a~~i~g~  306 (384)
T 2v3a_A          261 VDRSLR----------TSHANIYALGDCAEVDGLNLLYVMPLMACARALAQTLAGN  306 (384)
T ss_dssp             ECTTCB----------CSSTTEEECGGGEEETTBCCCSHHHHHHHHHHHHHHHTTC
T ss_pred             ECCCCC----------CCCCCEEEeeeeeeECCCCcchHHHHHHHHHHHHHHhcCC
Confidence            776654          55899999998863  21   2455689999999999985

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=99.96  E-value=1.5e-30  Score=270.03  Aligned_cols=297  Identities=16%  Similarity=0.242  Sum_probs=189.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeC-C-------CcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG-E-------QVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNL   73 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~-~-------~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~   73 (446)
                      .+||+||||||||++||..|++.|++|+|||+. +       .+||+|.+.        ||.|++.+..+........+ 
T Consensus       107 ~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~~~~~~g~~~~~GG~~~~~--------g~iP~~~l~~~~~~~~~~~~-  177 (598)
T 2x8g_A          107 DYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNV--------GCIPKKLMHQAGLLSHALED-  177 (598)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTHHHHHH--------SHHHHHHHHHHHHHHHHHHH-
T ss_pred             cccEEEECCCccHHHHHHHHHhCCCeEEEEeccCCcccccccccCceEecc--------CCCchHHHHHHHHHHHHHhh-
Confidence            479999999999999999999999999999973 2       478887653        44443322211110000000 


Q ss_pred             CCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-----------CCCCcEEeCeEEEEEEEcCCCceEEE
Q 013303           74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-----------GVDQVVRLHTEVLNARLVESNKWKVK  142 (446)
Q Consensus        74 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-----------~l~~~i~~~~~V~~v~~~~~~~~~v~  142 (446)
                            ...|.+...      .........++.+|+..+++++           ++.  +. ...+..++     .|.+.
T Consensus       178 ------~~~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~~-~~~~~~~~-----~~~v~  237 (598)
T 2x8g_A          178 ------AEHFGWSLD------RSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVT--YL-NAKGRLIS-----PHEVQ  237 (598)
T ss_dssp             ------HHHTTCCCC------GGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EE-CSEEEEEE-----TTEEE
T ss_pred             ------HHhCCcccc------CCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcE--EE-EEEEEEcC-----CCEEE
Confidence                  001111000      0001234577777877665542           332  22 22333332     35666


Q ss_pred             EEeCCCceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCE
Q 013303          143 SRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKE  222 (446)
Q Consensus       143 ~~~~~~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~  222 (446)
                      +...+++..++.||+||||||  +.|+.|++||.+.+   .+++.++... .+.+++|+|||+|.+|+|+|..|++.|.+
T Consensus       238 v~~~~g~~~~~~~d~lviAtG--s~p~~p~i~G~~~~---~~~~~~~~~~-~~~~~~vvViGgG~~g~E~A~~l~~~g~~  311 (598)
T 2x8g_A          238 ITDKNQKVSTITGNKIILATG--ERPKYPEIPGAVEY---GITSDDLFSL-PYFPGKTLVIGASYVALECAGFLASLGGD  311 (598)
T ss_dssp             EECTTCCEEEEEEEEEEECCC--EEECCCSSTTHHHH---CEEHHHHTTC-SSCCCSEEEECCSHHHHHHHHHHHHTTCC
T ss_pred             EEeCCCCeEEEEeCEEEEeCC--CCCCCCCCCCcccc---eEcHHHHhhC-ccCCCEEEEECCCHHHHHHHHHHHHcCCE
Confidence            655444445789999999999  89999999997542   3455444332 24578999999999999999999999999


Q ss_pred             EEEEEecCC----cccc-----ccCCCCC-CeeeccceeEEcc-------C---CcEE----ecCCcEEe--ecEEEEec
Q 013303          223 VHIASRSVA----DETH-----EKQPGYD-NMWLHSMVERANE-------D---GTVV----FRNGRVVS--ADVIMHCT  276 (446)
Q Consensus       223 V~l~~r~~~----~~~~-----~~~~~~~-~v~~~~~v~~i~~-------~---~~v~----~~dG~~~~--~D~vi~at  276 (446)
                      |+++.|+..    +..+     +.+.+.+ ++.....+.++..       +   +.+.    +.+|++++  +|.||+|+
T Consensus       312 Vtlv~~~~~l~~~d~~~~~~~~~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~  391 (598)
T 2x8g_A          312 VTVMVRSILLRGFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAV  391 (598)
T ss_dssp             EEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECS
T ss_pred             EEEEECCcCcCcCCHHHHHHHHHHHHhCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEe
Confidence            999998632    1111     1111112 3444544555521       1   3332    36887765  99999999


Q ss_pred             CccCCCCCCC---------CCCeeeeCCCCcccccccccCCCCCCCeEEecCCC-c-cCchhHHHHHHHHHHHHHcCC
Q 013303          277 GYKYNYPFLE---------TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQ-K-VIPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       277 G~~~~~~~l~---------~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~-~-~~~~~~~~~qa~~~a~~l~g~  343 (446)
                      |++|+.++|.         +.|.|.+|+..+          ++.|+||++|++. . ....+.+..||+.+|.++.|.
T Consensus       392 G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~----------ts~~~VyA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~  459 (598)
T 2x8g_A          392 GREPQLSKVLCETVGVKLDKNGRVVCTDDEQ----------TTVSNVYAIGDINAGKPQLTPVAIQAGRYLARRLFAG  459 (598)
T ss_dssp             CEEECGGGTBCGGGCCCBCTTSCBCCCTTSB----------CSSTTEEECGGGBTTSCCCHHHHHHHHHHHHHHHHHC
T ss_pred             CCccccCccCchhcCceECCCCcEEeCCCCc----------CCCCCEEEEeeecCCCCccHHHHHHhHHHHHHHHhcC
Confidence            9999988742         334555555543          5589999999984 2 345678899999999999864

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=99.96  E-value=7.5e-30  Score=254.28  Aligned_cols=274  Identities=15%  Similarity=0.145  Sum_probs=187.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC--cEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG   79 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~--~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~   79 (446)
                      ++||+|||||++|+++|..|++.|.  +|+|||+++.++.....                             .++..+.
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~-----------------------------l~~~~~~   54 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPP-----------------------------LSKAYLA   54 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGG-----------------------------GGTTTTT
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCC-----------------------------CcHHHhC
Confidence            5799999999999999999999998  79999997643210000                             0000000


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEE
Q 013303           80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV  159 (446)
Q Consensus        80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VV  159 (446)
                      - ....                 +++...+.++.++.+++  ++++++|+.+++..   ++|++.++.    ++.||+||
T Consensus        55 ~-~~~~-----------------~~~~~~~~~~~~~~gv~--~~~~~~v~~i~~~~---~~v~~~~g~----~~~~d~lv  107 (431)
T 1q1r_A           55 G-KATA-----------------ESLYLRTPDAYAAQNIQ--LLGGTQVTAINRDR---QQVILSDGR----ALDYDRLV  107 (431)
T ss_dssp             T-CSCS-----------------GGGBSSCHHHHHHTTEE--EECSCCEEEEETTT---TEEEETTSC----EEECSEEE
T ss_pred             C-CCCh-----------------HHhcccCHHHHHhCCCE--EEeCCEEEEEECCC---CEEEECCCC----EEECCEEE
Confidence            0 0000                 00000112334567776  88899999998643   567765443    78999999


Q ss_pred             EccCCCCCCccCCCCCCCCCCc-c-EEEeeecCCC-----CCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc
Q 013303          160 VCNGHFSVPRLAQVPGIDSWPG-K-QMHSHNYRIP-----NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD  232 (446)
Q Consensus       160 vAtG~~s~p~~p~i~G~~~~~g-~-~~hs~~~~~~-----~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~  232 (446)
                      +|||  +.|+.|++||.+. .+ . +.+.....+.     ....+++|+|||+|.+|+|+|..|++.|.+|+++.+.+..
T Consensus       108 iAtG--~~p~~~~i~G~~~-~~~~~v~~~~~~~d~~~l~~~l~~~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~  184 (431)
T 1q1r_A          108 LATG--GRPRPLPVASGAV-GKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARV  184 (431)
T ss_dssp             ECCC--EEECCCGGGTTHH-HHSTTEEESSSHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             EcCC--CCccCCCCCCccc-CCCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcc
Confidence            9999  7899999998752 22 1 3222211110     1135799999999999999999999999999999987641


Q ss_pred             ------cc----c-ccCCCC-CCeeeccceeEEcc--C-C---cEEecCCcEEeecEEEEecCccCCCCCCCCC-----C
Q 013303          233 ------ET----H-EKQPGY-DNMWLHSMVERANE--D-G---TVVFRNGRVVSADVIMHCTGYKYNYPFLETN-----G  289 (446)
Q Consensus       233 ------~~----~-~~~~~~-~~v~~~~~v~~i~~--~-~---~v~~~dG~~~~~D~vi~atG~~~~~~~l~~~-----g  289 (446)
                            ..    + +.+.+. .++.....|.++..  + +   .|.+.||+++++|.||+|+|++|+.+++...     +
T Consensus       185 l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~~  264 (431)
T 1q1r_A          185 LERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVDN  264 (431)
T ss_dssp             TTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCCEEECCHHHHHTTCCBSS
T ss_pred             ccchhhHHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCCCcCcchhhccCCCCCC
Confidence                  00    0 111111 24566678888875  2 3   3778899999999999999999998765322     2


Q ss_pred             eeeeCCCCcccccccccCCCCCCCeEEecCCCccC-----------chhHHHHHHHHHHHHHcCCC
Q 013303          290 IVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI-----------PFPFFELQSKWIASVLSGRI  344 (446)
Q Consensus       290 ~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~-----------~~~~~~~qa~~~a~~l~g~~  344 (446)
                      .|.+|+..+          ++.|+||++|++....           .++.+..||+.+|+++.|..
T Consensus       265 gi~Vd~~~~----------ts~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~  320 (431)
T 1q1r_A          265 GIVINEHMQ----------TSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILCGKV  320 (431)
T ss_dssp             SEECCTTSB----------CSSTTEEECGGGEEEEETTTTEEEECCSHHHHHHHHHHHHHHHTTCC
T ss_pred             CEEECCCcc----------cCCCCEEEEEeEEEEccccCCceEeeCHHHHHHHHHHHHHHHhcCCC
Confidence            266666654          5589999999886432           24678999999999999864

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=99.95  E-value=1.9e-29  Score=252.10  Aligned_cols=262  Identities=19%  Similarity=0.185  Sum_probs=177.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||||||++|..|++.|++|+|||+.+.+||.|.+.                                   + 
T Consensus       122 ~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~g-----------------------------------i-  165 (456)
T 2vdc_G          122 GLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVYG-----------------------------------I-  165 (456)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHHT-----------------------------------S-
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeec-----------------------------------C-
Confidence            4789999999999999999999999999999999999998763                                   0 


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                     +.|....++.++..+++++++++  +++++.|.         ..+++++.     .+.||+||+|
T Consensus       166 ---------------p~~~~~~~~~~~~~~~l~~~gv~--~~~~~~v~---------~~v~~~~~-----~~~~d~vvlA  214 (456)
T 2vdc_G          166 ---------------PGFKLEKSVVERRVKLLADAGVI--YHPNFEVG---------RDASLPEL-----RRKHVAVLVA  214 (456)
T ss_dssp             ---------------CTTTSCHHHHHHHHHHHHHTTCE--EETTCCBT---------TTBCHHHH-----HSSCSEEEEC
T ss_pred             ---------------CCccCCHHHHHHHHHHHHHCCcE--EEeCCEec---------cEEEhhHh-----HhhCCEEEEe
Confidence                           01111156778888888888887  88887652         11222111     2469999999


Q ss_pred             cCCCCCCccCCCCCCCCCCccEEEeeec---------CC--------CCCCCCCEEEEEecCCcHHHHHHHHhccCC-EE
Q 013303          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNY---------RI--------PNPFQDQVVILIGHYASGLDIKRDLAGFAK-EV  223 (446)
Q Consensus       162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~---------~~--------~~~~~~k~VvVVG~G~sg~eia~~l~~~~~-~V  223 (446)
                      ||. ..|+.|.+||.+. .| +.+..+|         ..        ...+.+|+|+|||+|.+|+|+|..+.+.|. +|
T Consensus       215 tG~-~~~~~~~ipG~~~-~g-v~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~V  291 (456)
T 2vdc_G          215 TGV-YKARDIKAPGSGL-GN-IVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGGDTAMDCVRTAIRQGATSV  291 (456)
T ss_dssp             CCC-CEECCTTCSCCTT-TT-EEEHHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECSSHHHHHHHHHHHHTTCSEE
T ss_pred             cCC-CCCCCCCCCCCcC-CC-cEEHHHHHHHhhhhhcccccccccccccccCCCEEEEECCChhHHHHHHHHHHcCCCEE
Confidence            994 2477788999753 33 3332211         11        123679999999999999999999998876 69


Q ss_pred             EEEEecCCc------cccccCCCCC-CeeeccceeEEccCCc---EEe------------------cCC--cEEeecEEE
Q 013303          224 HIASRSVAD------ETHEKQPGYD-NMWLHSMVERANEDGT---VVF------------------RNG--RVVSADVIM  273 (446)
Q Consensus       224 ~l~~r~~~~------~~~~~~~~~~-~v~~~~~v~~i~~~~~---v~~------------------~dG--~~~~~D~vi  273 (446)
                      +++.|++..      ..+..+.+.+ .+.....+.++..++.   |.+                  .+|  .++++|.||
T Consensus       292 tiv~r~~~~~~p~~~~e~~~~~~~Gv~~~~~~~~~~i~~~g~v~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~aD~Vi  371 (456)
T 2vdc_G          292 KCLYRRDRKNMPGSQREVAHAEEEGVEFIWQAAPEGFTGDTVVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVI  371 (456)
T ss_dssp             EEECSSCSTTCSSCHHHHHHHHHTTCEEECCSSSCCEEEEEEEETTEEEEEEEEEEEECTTCCEEEEEEEEEEEECSEEE
T ss_pred             EEEEeCCccCCCCCHHHHHHHHHCCCEEEeCCCceEEeCCCcEEEEEEEEEEecccCCcCCccccccCCcEEEEECCEEE
Confidence            999987641      1111111111 3333444444433222   122                  134  358899999


Q ss_pred             EecCccCCCC--CCC-------CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcC
Q 013303          274 HCTGYKYNYP--FLE-------TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSG  342 (446)
Q Consensus       274 ~atG~~~~~~--~l~-------~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g  342 (446)
                      +|+|+.|+..  ++.       +.|.|.+|+.        .+. ++.|+||++|++..+ .....+..||+.+|.++.+
T Consensus       372 ~A~G~~p~~~~~~l~~~gl~~~~~G~i~vd~~--------~~~-Ts~~~VfA~GD~~~g~~~v~~A~~~G~~aA~~i~~  441 (456)
T 2vdc_G          372 KALGFEPEDLPNAFDEPELKVTRWGTLLVDHR--------TKM-TNMDGVFAAGDIVRGASLVVWAIRDGRDAAEGIHA  441 (456)
T ss_dssp             ECSCEECCCHHHHHHSTTSCBCTTSSBCCCTT--------TCB-CSSTTEEECGGGGSSCCSHHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCCcchhhcccCCeeECCCCCEEECCC--------CCc-CCCCCEEEeccccCCchHHHHHHHHHHHHHHHHHH
Confidence            9999999864  443       3344555543        122 458999999998643 4467788899999988753

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=99.95  E-value=7.2e-29  Score=245.87  Aligned_cols=273  Identities=18%  Similarity=0.123  Sum_probs=184.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHH---CCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLR---EGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM   78 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~---~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~   78 (446)
                      |++|+|||||++|+++|..|++   .|++|+|||+++..+......                              .   
T Consensus         1 m~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~------------------------------~---   47 (409)
T 3h8l_A            1 MTKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALP------------------------------H---   47 (409)
T ss_dssp             -CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSC------------------------------C---
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchh------------------------------h---
Confidence            4799999999999999999999   899999999987442211000                              0   


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEE
Q 013303           79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV  158 (446)
Q Consensus        79 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~V  158 (446)
                          ..            ......+++..++.+.++++++.  +..+ +|+.++...   ..|++.++.+...++.||+|
T Consensus        48 ----~~------------~~~~~~~~~~~~~~~~~~~~gv~--~~~~-~v~~i~~~~---~~V~~~~g~~~~~~~~~d~l  105 (409)
T 3h8l_A           48 ----VA------------IGVRDVDELKVDLSEALPEKGIQ--FQEG-TVEKIDAKS---SMVYYTKPDGSMAEEEYDYV  105 (409)
T ss_dssp             ----CC------------SSCCCCCCEEEEHHHHTGGGTCE--EEEC-EEEEEETTT---TEEEEECTTSCEEEEECSEE
T ss_pred             ----cc------------cCCcCHHHHHHHHHHHHhhCCeE--EEEe-eEEEEeCCC---CEEEEccCCcccceeeCCEE
Confidence                00            00001122334456666677887  6665 899988644   57777776655567999999


Q ss_pred             EEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCC------CCEEEEEecC-------------------C------
Q 013303          159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQ------DQVVILIGHY-------------------A------  207 (446)
Q Consensus       159 VvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~------~k~VvVVG~G-------------------~------  207 (446)
                      |+|||  +.|+.|.+||++.   ...+.+.+.+...+.      .++++|||+|                   .      
T Consensus       106 ViAtG--~~~~~~~ipG~~~---~~~~~~~~~~~~~~~~~l~~~~~~~vViG~G~f~~~~~~~~~~p~~~~p~~~~~~~~  180 (409)
T 3h8l_A          106 IVGIG--AHLATELVKGWDK---YGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEG  180 (409)
T ss_dssp             EECCC--CEECGGGSBTHHH---HCEESSSTTHHHHHHHHHHHCCSEEEEEEECCBCCCCSSCCBSCTTSSCCCSCSSCH
T ss_pred             EECCC--CCcCccCCCChhh---cCcCcCCHHHHHHHHHHHHHhcCCeEEEEecccccCCCccccccccccCCCCcccCC
Confidence            99999  7899898999764   223333322221111      1567799999                   2      


Q ss_pred             cHHHHHHHHh----ccC----CEEEEEEecCC----c----ccccc-CCCC-CCeeeccceeEEccCCcEEecCCcEEee
Q 013303          208 SGLDIKRDLA----GFA----KEVHIASRSVA----D----ETHEK-QPGY-DNMWLHSMVERANEDGTVVFRNGRVVSA  269 (446)
Q Consensus       208 sg~eia~~l~----~~~----~~V~l~~r~~~----~----~~~~~-~~~~-~~v~~~~~v~~i~~~~~v~~~dG~~~~~  269 (446)
                      .|+|+|..++    +.|    .+|+++.+.+.    .    +.+.+ +.+. .++.....|+++++++ |+++||+++++
T Consensus       181 ~~~e~a~~~~~~l~~~g~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~-v~~~~g~~~~~  259 (409)
T 3h8l_A          181 PVFEMSLMLHGYFKKKGMLDKVHVTVFSPGEYLSDLSPNSRKAVASIYNQLGIKLVHNFKIKEIREHE-IVDEKGNTIPA  259 (409)
T ss_dssp             HHHHHHHHHHHHHHTTTCTTTEEEEEECSSSSSTTBCHHHHHHHHHHHHHHTCEEECSCCEEEECSSE-EEETTSCEEEC
T ss_pred             HHHHHHHHHHHHHHHcCCCCCeEEEEEeCCccccccCHHHHHHHHHHHHHCCCEEEcCCceEEECCCe-EEECCCCEEee
Confidence            3778886544    556    48999988652    0    00111 1111 2455567899998765 99999999999


Q ss_pred             cEEEEecCccCCC-------CCCCCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc---cCchhHHHHHHHHHHHH
Q 013303          270 DVIMHCTGYKYNY-------PFLETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK---VIPFPFFELQSKWIASV  339 (446)
Q Consensus       270 D~vi~atG~~~~~-------~~l~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~---~~~~~~~~~qa~~~a~~  339 (446)
                      |.||+|+|+.|+.       ++.++.|.+.+|+..+         ..+.|+||++|++..   ......++.||+.+|++
T Consensus       260 D~vi~a~G~~~~~~l~~~~~~l~~~~G~i~vd~~~~---------~~~~~~vfa~GD~~~~~~~~~~~~A~~q~~~aa~~  330 (409)
T 3h8l_A          260 DITILLPPYTGNPALKNSTPDLVDDGGFIPTDLNMV---------SIKYDNVYAVGDANSMTVPKLGYLAVMTGRIAAQH  330 (409)
T ss_dssp             SEEEEECCEECCHHHHTSCGGGSCTTSCBCBBTTSB---------BSSCTTEEECGGGBTTCCSCCHHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCccHHHHhccccCcCCCCCEEeCcccc---------cCCCCCEEEeehhccCCCCcHHHHHHHHHHHHHHH
Confidence            9999999999872       2234455666666544         125899999998864   34457789999999999


Q ss_pred             HcCCC
Q 013303          340 LSGRI  344 (446)
Q Consensus       340 l~g~~  344 (446)
                      +.+.+
T Consensus       331 i~~~l  335 (409)
T 3h8l_A          331 LANRL  335 (409)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            87544

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=99.95  E-value=2.4e-28  Score=244.43  Aligned_cols=261  Identities=17%  Similarity=0.197  Sum_probs=179.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHH-C------CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLR-E------GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLP   74 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~-~------g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~   74 (446)
                      +++|+||||||||+++|..|++ .      |.+|+|||+.+.+||.|++.         +.                   
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~g---------v~-------------------   54 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSG---------VA-------------------   54 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHT---------SC-------------------
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccccc---------cC-------------------
Confidence            4799999999999999999999 7      99999999998899998762         11                   


Q ss_pred             CCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEE
Q 013303           75 RELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET  154 (446)
Q Consensus        75 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~  154 (446)
                                            +.++...++..++.++++++++.  ++.++.|      . .  .|++.++     ++.
T Consensus        55 ----------------------p~~~~~~~~~~~~~~~~~~~~v~--~~~~v~v------~-~--~v~~~~~-----~~~   96 (456)
T 1lqt_A           55 ----------------------PDHPKIKSISKQFEKTAEDPRFR--FFGNVVV------G-E--HVQPGEL-----SER   96 (456)
T ss_dssp             ----------------------TTCTGGGGGHHHHHHHHTSTTEE--EEESCCB------T-T--TBCHHHH-----HHH
T ss_pred             ----------------------CCCCCHHHHHHHHHHHHhcCCCE--EEeeEEE------C-C--EEEECCC-----eEe
Confidence                                  11222346677888888777665  5555332      1 1  1222221     367


Q ss_pred             EcEEEEccCCCCC-CccCCCCCCCCCCccEEEeeec-----------CCCCCCCCCEEEEEecCCcHHHHHHHHhcc---
Q 013303          155 FDAVVVCNGHFSV-PRLAQVPGIDSWPGKQMHSHNY-----------RIPNPFQDQVVILIGHYASGLDIKRDLAGF---  219 (446)
Q Consensus       155 ~d~VVvAtG~~s~-p~~p~i~G~~~~~g~~~hs~~~-----------~~~~~~~~k~VvVVG~G~sg~eia~~l~~~---  219 (446)
                      ||+||+|||  +. |+.|++||.+ +.+ ++++.++           ++...+.+++|+|||+|++|+|+|..|++.   
T Consensus        97 ~d~lViAtG--~~~~~~~~ipG~~-~~g-v~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~  172 (456)
T 1lqt_A           97 YDAVIYAVG--AQSDRMLNIPGED-LPG-SIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDV  172 (456)
T ss_dssp             SSEEEECCC--CCEECCCCCTTTT-STT-EEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHH
T ss_pred             CCEEEEeeC--CCCCCCCCCCCCC-CCC-cEEHHHHHhhhhcCcccccchhhcCCCEEEEECCCHHHHHHHHHHHhhhhh
Confidence            999999999  54 7888899986 444 5555443           333346789999999999999999999974   


Q ss_pred             -----------------C-CEEEEEEecCCcc------------------------cc----------------------
Q 013303          220 -----------------A-KEVHIASRSVADE------------------------TH----------------------  235 (446)
Q Consensus       220 -----------------~-~~V~l~~r~~~~~------------------------~~----------------------  235 (446)
                                       + ++|+++.|++...                        .+                      
T Consensus       173 l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~f~~~elrel~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  252 (456)
T 1lqt_A          173 LARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVL  252 (456)
T ss_dssp             HTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCHHHHHHGGGCTTEEEECCGGGGTTCCHHHHHHHCHHHHHHHHHH
T ss_pred             hcCCCccHHHHHHHHHCCCcEEEEEecCChhhhccChHHHHHhhcCCCceeeeChHHhccchhhhhhhccHHHHHHHHHH
Confidence                             3 5999999876410                        00                      


Q ss_pred             cc-CCCC-----C--CeeeccceeEEccCCc---EEec----------------CC--cEEeecEEEEecCccCCC----
Q 013303          236 EK-QPGY-----D--NMWLHSMVERANEDGT---VVFR----------------NG--RVVSADVIMHCTGYKYNY----  282 (446)
Q Consensus       236 ~~-~~~~-----~--~v~~~~~v~~i~~~~~---v~~~----------------dG--~~~~~D~vi~atG~~~~~----  282 (446)
                      .+ +.+.     .  .+.....+.++..++.   |.+.                +|  +++++|.||+|+||+|+.    
T Consensus       253 ~~~~~~~~~~~~~gv~i~~~~~~~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~p~~l~gl  332 (456)
T 1lqt_A          253 RGYADREPRPGHRRMVFRFLTSPIEIKGKRKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVPTPGL  332 (456)
T ss_dssp             HHHHTCC-CTTSEEEEEECSEEEEEEECSSSCCEEEEEEEEEEECSSSSEEEEEEEEEEEEECSEEEECSCEECCCCTTS
T ss_pred             HHHhhcCCCCCCceEEEEeCCCCeEEecCCcEeEEEEEEEEecCCCcccccccCCCceEEEEcCEEEEccccccCCCCCC
Confidence            00 0110     2  3344556777765543   6664                45  358899999999999985    


Q ss_pred             CCCCCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCccCc--hhHHHHHHHHHHHHHcC
Q 013303          283 PFLETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVIP--FPFFELQSKWIASVLSG  342 (446)
Q Consensus       283 ~~l~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~~--~~~~~~qa~~~a~~l~g  342 (446)
                      + +++.+.+.+|+..+.         ++.|+||++|++..++.  ...+..||+.+|.++.+
T Consensus       333 ~-~d~~g~i~vn~~~rv---------t~~pgvya~GD~~~gp~~~i~~a~~~g~~~a~~i~~  384 (456)
T 1lqt_A          333 P-FDDQSGTIPNVGGRI---------NGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTLIK  384 (456)
T ss_dssp             C-CBTTTTBCCEETTEE---------TTCSSEEECTHHHHCSCSCTTHHHHHHHHHHHHHHH
T ss_pred             c-ccCCCCeeECCCCcC---------CCCCCEEEEeccCCCCchhHHHHHHHHHHHHHHHHH
Confidence            2 233444555554431         24899999998864332  34678899999888764

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=99.94  E-value=7.2e-27  Score=253.30  Aligned_cols=280  Identities=16%  Similarity=0.177  Sum_probs=196.3

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d   82 (446)
                      +||+||||||||++||..|++.|++|+|||+++.+||+|.+.+                             +..  +  
T Consensus       129 ~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~~~~-----------------------------k~~--i--  175 (965)
T 2gag_A          129 TDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLDTA-----------------------------GEQ--I--  175 (965)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGGGSS-----------------------------CCE--E--
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceeccCC-----------------------------ccc--c--
Confidence            6899999999999999999999999999999999999887310                             000  0  


Q ss_pred             CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCceEEEEEeC-------------CC
Q 013303           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKK-------------DD  148 (446)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-------------~~  148 (446)
                                    ... ...++...+.+...++ ++.  ++.+++|..+....   ....+...             .+
T Consensus       176 --------------~~~-~~~~~~~~~~~~l~~~~~v~--~~~~~~V~~i~~~~---~~~~v~~~~~~~~v~~~~~~~~~  235 (965)
T 2gag_A          176 --------------DGM-DSSAWIEQVTSELAEAEETT--HLQRTTVFGSYDAN---YLIAAQRRTVHLDGPSGPGVSRE  235 (965)
T ss_dssp             --------------TTE-EHHHHHHHHHHHHHHSTTEE--EESSEEEEEEETTT---EEEEEEECSTTCSSCCCTTCCSE
T ss_pred             --------------CCC-CHHHHHHHHHHHHhhcCCcE--EEeCCEEEeeecCC---ceeeeEeecccccccccccCCCC
Confidence                          000 1234445554545554 665  78899999886432   22111110             01


Q ss_pred             ceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeec---C-CCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEE
Q 013303          149 VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNY---R-IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVH  224 (446)
Q Consensus       149 ~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~---~-~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~  224 (446)
                      ...++.||+||||||  +.|+.|++||.+. +| ++++...   . ......+++|+|||+|.+|+|+|..|++.|.+|+
T Consensus       236 ~~~~i~~d~lVlATG--s~p~~~~ipG~~~-~g-v~~~~~~~~~l~~~~~~~gk~vvViGgG~~g~E~A~~L~~~G~~Vt  311 (965)
T 2gag_A          236 RIWHIRAKQVVLATG--AHERPIVFENNDR-PG-IMLAGAVRSYLNRYGVRAGARIAVATTNDSAYELVRELAATGGVVA  311 (965)
T ss_dssp             EEEEEEEEEEEECCC--EEECCCCCBTCCS-TT-EEEHHHHHHHHHTTCEESCSSEEEEESSTTHHHHHHHHGGGTCCSE
T ss_pred             ceEEEECCEEEECCC--CccCCCCCCCCCC-CC-EEEhHHHHHHHHhcCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEE
Confidence            124689999999999  7899899999764 33 4444221   1 1233467999999999999999999999999999


Q ss_pred             EEEecCCc-cccccCCCC-CCeeeccceeEEcc--CC---cEEecC-------C--cEEeecEEEEecCccCCCCCCCC-
Q 013303          225 IASRSVAD-ETHEKQPGY-DNMWLHSMVERANE--DG---TVVFRN-------G--RVVSADVIMHCTGYKYNYPFLET-  287 (446)
Q Consensus       225 l~~r~~~~-~~~~~~~~~-~~v~~~~~v~~i~~--~~---~v~~~d-------G--~~~~~D~vi~atG~~~~~~~l~~-  287 (446)
                      ++++++.. .....+.+. .++.....|.++..  ++   .|++.+       |  +++++|.||+|+|++|+..++.. 
T Consensus       312 vv~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~~~~  391 (965)
T 2gag_A          312 VIDARSSISAAAAQAVADGVQVISGSVVVDTEADENGELSAIVVAELDEARELGGTQRFEADVLAVAGGFNPVVHLHSQR  391 (965)
T ss_dssp             EEESCSSCCHHHHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCEEECCHHHHHT
T ss_pred             EEECCCccchhHHHHHhCCeEEEeCCEeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCcCcChHHHHhC
Confidence            99988651 001222222 26677778888876  33   377765       5  56899999999999999887753 


Q ss_pred             CCeeeeCCCCcccccccccCCCCCCCeEEecCCCccCchhHHHHHHHHHHHHHcCCC
Q 013303          288 NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRI  344 (446)
Q Consensus       288 ~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~~~~~~~~qa~~~a~~l~g~~  344 (446)
                      .+.+.+|+....     ..+.++.|+||++|++.....+..+..||+.+|.++.+.+
T Consensus       392 ~g~i~vd~~~~~-----~v~~ts~p~IyAaGD~a~~~~l~~A~~~G~~aA~~i~~~l  443 (965)
T 2gag_A          392 QGKLDWDTTIHA-----FVPADAVANQHLAGAMTGRLDTASALSTGAATGAAAATAA  443 (965)
T ss_dssp             TCCEEEETTTTE-----EEECSCCTTEEECGGGGTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred             CCcEEEcCcccc-----cccCCCCCCEEEEEecCCchhHHHHHHHHHHHHHHHHHHc
Confidence            356778876531     1112458999999998766666678899999999987543

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=99.94  E-value=6.1e-28  Score=241.73  Aligned_cols=261  Identities=20%  Similarity=0.260  Sum_probs=178.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCC--CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG   79 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g--~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~   79 (446)
                      +++|+|||||++|+.+|..|++.|  .+|+|||+.+.+||.|++.         +.                        
T Consensus         6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g---------~~------------------------   52 (460)
T 1cjc_A            6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFG---------VA------------------------   52 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHT---------SC------------------------
T ss_pred             CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecc---------cC------------------------
Confidence            579999999999999999999998  9999999999999988762         11                        


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEE
Q 013303           80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV  159 (446)
Q Consensus        80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VV  159 (446)
                                       +.++...++..++.++++++++.  +++++.|.       .  .|++.+     .++.||+||
T Consensus        53 -----------------p~~~~~~~~~~~~~~~~~~~gv~--~~~~~~v~-------~--~V~~~~-----~~~~~d~lV   99 (460)
T 1cjc_A           53 -----------------PDHPEVKNVINTFTQTARSDRCA--FYGNVEVG-------R--DVTVQE-----LQDAYHAVV   99 (460)
T ss_dssp             -----------------TTCGGGGGHHHHHHHHHTSTTEE--EEBSCCBT-------T--TBCHHH-----HHHHSSEEE
T ss_pred             -----------------CCCccHHHHHHHHHHHHHhCCcE--EEeeeEEe-------e--EEEecc-----ceEEcCEEE
Confidence                             11122246678888888888776  77776551       1  122221     136799999


Q ss_pred             EccCCCCCC-ccCCCCCCCCCCccEEEeeec----------CCC-CCCCCCEEEEEecCCcHHHHHHHHh----------
Q 013303          160 VCNGHFSVP-RLAQVPGIDSWPGKQMHSHNY----------RIP-NPFQDQVVILIGHYASGLDIKRDLA----------  217 (446)
Q Consensus       160 vAtG~~s~p-~~p~i~G~~~~~g~~~hs~~~----------~~~-~~~~~k~VvVVG~G~sg~eia~~l~----------  217 (446)
                      +|||  +.| +.|++||.+ ..+ ++++..+          ... ..+.+++|+|||+|.+|+|+|..|+          
T Consensus       100 lAtG--s~~~~~~~ipG~~-~~g-v~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~td  175 (460)
T 1cjc_A          100 LSYG--AEDHQALDIPGEE-LPG-VFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTD  175 (460)
T ss_dssp             ECCC--CCEECCCCCTTTT-STT-EEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSC
T ss_pred             EecC--cCCCCCCCCCCCC-CCc-EEEHHHHHHHhhcCccccccccCCCCCEEEEECCCHHHHHHHHHHhhchhhhcccc
Confidence            9999  564 778999986 333 4444333          111 1347899999999999999999999          


Q ss_pred             ----------ccCC-EEEEEEecCCcc------c---c---c---------------------------------cC-CC
Q 013303          218 ----------GFAK-EVHIASRSVADE------T---H---E---------------------------------KQ-PG  240 (446)
Q Consensus       218 ----------~~~~-~V~l~~r~~~~~------~---~---~---------------------------------~~-~~  240 (446)
                                +.+. +|+++.|++...      .   +   .                                 +. .+
T Consensus       176 i~~~a~~~l~~~g~~~V~lv~r~~~~~~~ft~~el~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  255 (460)
T 1cjc_A          176 ITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATE  255 (460)
T ss_dssp             CCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHS
T ss_pred             ccHHHHHHHhhCCCcEEEEEEcCChHhhccCHHHHHHhhcCCCceeEechhhhcchhhhhhhccHHHHHHHHHHHHHHHh
Confidence                      4555 799999876410      0   0   0                                 00 01


Q ss_pred             --------------C-CCeeeccceeEEccC--C-c---EEec---------------CC--cEEeecEEEEecCccCCC
Q 013303          241 --------------Y-DNMWLHSMVERANED--G-T---VVFR---------------NG--RVVSADVIMHCTGYKYNY  282 (446)
Q Consensus       241 --------------~-~~v~~~~~v~~i~~~--~-~---v~~~---------------dG--~~~~~D~vi~atG~~~~~  282 (446)
                                    . -.+.....+.++..+  + .   |.+.               +|  +++++|.||+|+|++|+.
T Consensus       256 ~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~~l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p~~  335 (460)
T 1cjc_A          256 KPGVEEAARRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGYKSRP  335 (460)
T ss_dssp             CCCHHHHHHHHTCSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCEECCC
T ss_pred             ccccccccCCCCCCceEEEECCCChheEEcCCCCceEEEEEEEEEEEccccCCCcccCCCceEEEEcCEEEECCCCCCCC
Confidence                          1 133444566777654  3 2   5543               35  468999999999999985


Q ss_pred             --CC--CCCCCeeeeCCCCcccccccccCCCC-CCCeEEecCCCccCc--hhHHHHHHHHHHHHHcC
Q 013303          283 --PF--LETNGIVTVDDNRVGPLYKHVFPPVL-APGLSFVGIPQKVIP--FPFFELQSKWIASVLSG  342 (446)
Q Consensus       283 --~~--l~~~g~i~~~~~~~~~l~~~~~~~~~-~p~l~~iG~~~~~~~--~~~~~~qa~~~a~~l~g  342 (446)
                        .+  +++.+.+.+|+..+          ++ .|+||++|++..++.  ...+..||+.+|.++.+
T Consensus       336 l~gl~~~d~~g~i~vn~~~r----------t~~~p~vya~Gd~~~g~~~~i~~a~~~g~~aa~~i~~  392 (460)
T 1cjc_A          336 IDPSVPFDPKLGVVPNMEGR----------VVDVPGLYCSGWVKRGPTGVITTTMTDSFLTGQILLQ  392 (460)
T ss_dssp             CCTTSCCBTTTTBCCEETTE----------ETTCTTEEECTHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcccccCCCeeECCCCc----------CcCCCCEEEEEeCCcCCCccHHHHHHHHHHHHHHHHH
Confidence              11  23334465665554          33 599999998874333  34678899999888764

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=99.94  E-value=3.1e-28  Score=256.18  Aligned_cols=258  Identities=17%  Similarity=0.135  Sum_probs=190.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      ++||+|||||+|||++|..|++.|++|+|||+++.+||.|.....                                   
T Consensus       391 ~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~~~~-----------------------------------  435 (690)
T 3k30_A          391 DARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQESA-----------------------------------  435 (690)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHHHHT-----------------------------------
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeeeccC-----------------------------------
Confidence            479999999999999999999999999999999999999875210                                   


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV  160 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVv  160 (446)
                                    .+.+....++.+|+...++++ +++  ++++++|..             .+.    .++.||+||+
T Consensus       436 --------------~p~~~~~~~~~~~~~~~~~~~~gv~--~~~~~~v~~-------------~~~----~~~~~d~lvl  482 (690)
T 3k30_A          436 --------------LPGLSAWGRVKEYREAVLAELPNVE--IYRESPMTG-------------DDI----VEFGFEHVIT  482 (690)
T ss_dssp             --------------STTCGGGGHHHHHHHHHHHTCTTEE--EESSCCCCH-------------HHH----HHTTCCEEEE
T ss_pred             --------------CCchhHHHHHHHHHHHHHHHcCCCE--EEECCeecH-------------HHH----hhcCCCEEEE
Confidence                          111122357888998888887 666  666654321             111    2467999999


Q ss_pred             ccCCCCC------CccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEe--cCCcHHHHHHHHhccCCEEEEEEecCCc
Q 013303          161 CNGHFSV------PRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIG--HYASGLDIKRDLAGFAKEVHIASRSVAD  232 (446)
Q Consensus       161 AtG~~s~------p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG--~G~sg~eia~~l~~~~~~V~l~~r~~~~  232 (446)
                      |||....      |..|.+||.+.  ..++++.++.......+++|+|||  +|.+|+|+|..|++.+.+|+++.+.+..
T Consensus       483 AtG~~~~~~~~~~~~~~~i~G~~~--~~v~~~~~~l~~~~~~g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l  560 (690)
T 3k30_A          483 ATGATWRTDGVARFHTTALPIAEG--MQVLGPDDLFAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQV  560 (690)
T ss_dssp             CCCEEECSSCCSSSCSSCCCBCTT--SEEECHHHHHTTCCCSSSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             cCCCccccccccccCCCCCCCCCC--CcEEcHHHHhCCCCCCCCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEeccccc
Confidence            9994322      56788888764  456676666665666789999999  9999999999999999999999987641


Q ss_pred             ------c----c-cccCCCC-CCeeeccceeEEccCCcEEec-----CCcEEeecEEEEecCccCCCCCCCCCCeeeeCC
Q 013303          233 ------E----T-HEKQPGY-DNMWLHSMVERANEDGTVVFR-----NGRVVSADVIMHCTGYKYNYPFLETNGIVTVDD  295 (446)
Q Consensus       233 ------~----~-~~~~~~~-~~v~~~~~v~~i~~~~~v~~~-----dG~~~~~D~vi~atG~~~~~~~l~~~g~i~~~~  295 (446)
                            .    . .+.+.+. .++..+..|.++..++ +.+.     +++++++|.||+|||++|+..++.+.+ ...+ 
T Consensus       561 ~~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~-~~v~~~~~~~~~~i~aD~VV~A~G~~p~~~l~~~l~-~~~~-  637 (690)
T 3k30_A          561 SSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVGAGG-VTVRDTYASIERELECDAVVMVTARLPREELYLDLV-ARRD-  637 (690)
T ss_dssp             TGGGGGGTCHHHHHHHHHHTTCEEEESEEEEEEETTE-EEEEETTTCCEEEEECSEEEEESCEEECCHHHHHHH-HHHH-
T ss_pred             ccccccchhHHHHHHHHHHCCCEEEcCcEEEEEECCe-EEEEEccCCeEEEEECCEEEECCCCCCChHHHHHHh-hhhc-
Confidence                  0    0 1111122 2566677899997655 4432     456789999999999999987654311 0000 


Q ss_pred             CCcccccccccCCCCCCCeEEecCCCccCchhHHHHHHHHHHHHHcCCC
Q 013303          296 NRVGPLYKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRI  344 (446)
Q Consensus       296 ~~~~~l~~~~~~~~~~p~l~~iG~~~~~~~~~~~~~qa~~~a~~l~g~~  344 (446)
                                 . ++.|+||++|++........+..||+.+|.++.+.+
T Consensus       638 -----------~-t~~~~VyaiGD~~~~~~~~~A~~~g~~aa~~i~~~l  674 (690)
T 3k30_A          638 -----------A-GEIASVRGIGDAWAPGTIAAAVWSGRRAAEEFDAVL  674 (690)
T ss_dssp             -----------H-TSCSEEEECGGGTSCBCHHHHHHHHHHHHHHTTCCC
T ss_pred             -----------c-cCCCCEEEEeCCCchhhHHHHHHHHHHHHHHHHhhc
Confidence                       1 448999999998877777778999999999998874

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=99.94  E-value=6.7e-28  Score=254.68  Aligned_cols=269  Identities=14%  Similarity=0.124  Sum_probs=184.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .+||+|||||+|||+||..|++.|++|+|||+++.+||.|.+...                                   
T Consensus       389 ~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~~~~-----------------------------------  433 (729)
T 1o94_A          389 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAA-----------------------------------  433 (729)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTT-----------------------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeeeccc-----------------------------------
Confidence            479999999999999999999999999999999999999886310                                   


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                       +             +.++....+.+|+...++.+.     ..+..+..+..    ...|+++++    .++.||+||+|
T Consensus       434 -~-------------pg~~~~~~~~~~~~~~i~~~~-----~~~~~~v~i~~----~~~v~~~~~----~~~~~d~vviA  486 (729)
T 1o94_A          434 -L-------------PGLGEWSYHRDYRETQITKLL-----KKNKESQLALG----QKPMTADDV----LQYGADKVIIA  486 (729)
T ss_dssp             -S-------------TTCGGGHHHHHHHHHHHHHHH-----HHSTTCEEECS----CCCCCHHHH----HTSCCSEEEEC
T ss_pred             -C-------------CChHHHHHHHHHHHHHHHHhh-----cccCCceEEEe----CeEEehhhc----cccCCCEEEEc
Confidence             0             011112456667766666541     00111112211    112222221    14679999999


Q ss_pred             cCCCCC------CccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEe--cCCcHHHHHHHHhccCCEEEEEEecCCc-
Q 013303          162 NGHFSV------PRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIG--HYASGLDIKRDLAGFAKEVHIASRSVAD-  232 (446)
Q Consensus       162 tG~~s~------p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG--~G~sg~eia~~l~~~~~~V~l~~r~~~~-  232 (446)
                      ||....      |+.|++||.+.+...++++.++.......+++|+|||  +|.+|+|+|..|++.|.+|+++.+.+.. 
T Consensus       487 tG~~~~~~~~~~p~~~~ipG~~~~~~~v~~~~~~l~~~~~~gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~l~~  566 (729)
T 1o94_A          487 TGARWNTDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLAN  566 (729)
T ss_dssp             CCEEECSSCCCTTTSSCCTTCCTTSTTEECHHHHHHCCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTH
T ss_pred             CCCCcccccccCccCCCCCCccccCCCEEEHHHHhcCCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEecccccc
Confidence            994321      6788899987655567776666555556789999999  9999999999999999999999987620 


Q ss_pred             --------ccc-ccCCCCC-CeeeccceeEEccCCcEEe----cCC-cE------------------EeecEEEEecCcc
Q 013303          233 --------ETH-EKQPGYD-NMWLHSMVERANEDGTVVF----RNG-RV------------------VSADVIMHCTGYK  279 (446)
Q Consensus       233 --------~~~-~~~~~~~-~v~~~~~v~~i~~~~~v~~----~dG-~~------------------~~~D~vi~atG~~  279 (446)
                              ..+ +.+.+.+ ++.....|.++..++ +.+    .++ ++                  +++|.||+|+|++
T Consensus       567 ~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~  645 (729)
T 1o94_A          567 YMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGR-MEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRH  645 (729)
T ss_dssp             HHHHTTCHHHHHHHHHHTTCEEECSEEEEEEETTE-EEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEE
T ss_pred             cccccccHHHHHHHHHhCCCEEEcCcEEEEEECCe-EEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCC
Confidence                    011 1111222 455667788887654 443    243 32                  8999999999999


Q ss_pred             CCCCCCCCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCccCchhHHHHHHHHHHHHHcCCC
Q 013303          280 YNYPFLETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRI  344 (446)
Q Consensus       280 ~~~~~l~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~~~~~~~~qa~~~a~~l~g~~  344 (446)
                      |+..++...+ ..+|+..+          ++.|+||++|++........+..||+.+|.++.+.+
T Consensus       646 p~~~l~~~l~-~~vd~~~~----------t~~~~VyAiGD~~~~~~~~~A~~~G~~aA~~i~~~l  699 (729)
T 1o94_A          646 SECTLWNELK-ARESEWAE----------NDIKGIYLIGDAEAPRLIADATFTGHRVAREIEEAN  699 (729)
T ss_dssp             ECCHHHHHHH-HTGGGTGG----------GTCCEEEECGGGTSCCCHHHHHHHHHHHHHTTTSSC
T ss_pred             CChHHHHHHh-hhcccccc----------cCCCCeEEEeCccchhhHHHHHHHHHHHHHHhhhhc
Confidence            9987664211 12233322          447999999998766667778999999999998753

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=99.94  E-value=1.3e-27  Score=238.85  Aligned_cols=269  Identities=13%  Similarity=0.167  Sum_probs=182.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHH---CCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLR---EGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM   78 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~---~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~   78 (446)
                      ++||+|||||++|+++|..|++   .|++|+|||+++..    .+.+                   .+.           
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~----~~~~-------------------~~~-----------   49 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYF----QFVP-------------------SNP-----------   49 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEE----ECGG-------------------GHH-----------
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCC----cccC-------------------Ccc-----------
Confidence            5799999999999999999999   79999999997632    1100                   000           


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEE
Q 013303           79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV  158 (446)
Q Consensus        79 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~V  158 (446)
                            +.         .......+++...+.+++++.+++  +. ..+|+.+++..   .+|++.++.    ++.||+|
T Consensus        50 ------~~---------~~g~~~~~~~~~~l~~~~~~~gv~--~~-~~~v~~id~~~---~~V~~~~g~----~i~~d~l  104 (437)
T 3sx6_A           50 ------WV---------GVGWKERDDIAFPIRHYVERKGIH--FI-AQSAEQIDAEA---QNITLADGN----TVHYDYL  104 (437)
T ss_dssp             ------HH---------HHTSSCHHHHEEECHHHHHTTTCE--EE-CSCEEEEETTT---TEEEETTSC----EEECSEE
T ss_pred             ------cc---------ccCccCHHHHHHHHHHHHHHCCCE--EE-EeEEEEEEcCC---CEEEECCCC----EEECCEE
Confidence                  00         001123356666677788888887  54 57999998654   467665543    7899999


Q ss_pred             EEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCC--------CCCCEEEEEecCCcH------HHHHHHHh----ccC
Q 013303          159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNP--------FQDQVVILIGHYASG------LDIKRDLA----GFA  220 (446)
Q Consensus       159 VvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~--------~~~k~VvVVG~G~sg------~eia~~l~----~~~  220 (446)
                      |+|||  +.|+.|.+||++.+.+...+.+.+.+...        +.+++++|||+|++|      +|+|..++    +.+
T Consensus       105 viAtG--~~~~~~~ipG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~g  182 (437)
T 3sx6_A          105 MIATG--PKLAFENVPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASCFGPAYEYAMIVASDLKKRG  182 (437)
T ss_dssp             EECCC--CEECGGGSTTCSTTTSSEECCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTT
T ss_pred             EECCC--CCcCcccCCCCCcccCcceecccccHHHHHHHHHHHHHhCCCEEEEEcCCCCCcCcHHHHHHHHHHHHHHHcC
Confidence            99999  88999999998765444433332222111        124567899997654      88885554    455


Q ss_pred             CE-----EEEEEecCCc------------ccc-ccCCCC-CCeeeccceeEEccCCcEEecC---------CcEEeecEE
Q 013303          221 KE-----VHIASRSVAD------------ETH-EKQPGY-DNMWLHSMVERANEDGTVVFRN---------GRVVSADVI  272 (446)
Q Consensus       221 ~~-----V~l~~r~~~~------------~~~-~~~~~~-~~v~~~~~v~~i~~~~~v~~~d---------G~~~~~D~v  272 (446)
                      .+     |+++++.+..            ..+ +.+.+. -++..+..|.++++++ +.+++         ++++++|.|
T Consensus       183 ~~~~~~~Vtlv~~~~~~~~~~l~~~~~~~~~~~~~l~~~gI~~~~~~~v~~v~~~~-v~~~~~~~~g~~~~~~~i~~D~v  261 (437)
T 3sx6_A          183 MRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIEAYTNCKVTKVEDNK-MYVTQVDEKGETIKEMVLPVKFG  261 (437)
T ss_dssp             CGGGCSCEEEEESSSSTTCTTTTCCTTHHHHHHHHHHHTTCEEECSEEEEEEETTE-EEEEEECTTSCEEEEEEEECSEE
T ss_pred             CcccCcEEEEEcCCccccccccCcchHHHHHHHHHHHHCCCEEEcCCEEEEEECCe-EEEEecccCCccccceEEEEeEE
Confidence            43     9999987631            001 111111 2455667899997654 66654         667899999


Q ss_pred             EEecCccCCCC------CCCCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCccC-------------chhHHHHHH
Q 013303          273 MHCTGYKYNYP------FLETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI-------------PFPFFELQS  333 (446)
Q Consensus       273 i~atG~~~~~~------~l~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~-------------~~~~~~~qa  333 (446)
                      ++|+|+.++.+      .+++.|.|.+|+..+.         .++|+||++|++....             ....+..||
T Consensus       262 v~~~g~~~~~~~~~~~gl~~~~G~i~Vd~~l~t---------~~~~~Ifa~GD~~~~~~~~~~~~~~~~pk~~~~A~~qg  332 (437)
T 3sx6_A          262 MMIPAFKGVPAVAGVEGLCNPGGFVLVDEHQRS---------KKYANIFAAGIAIAIPPVETTPVPTGAPKTGYMIESMV  332 (437)
T ss_dssp             EEECCEECCHHHHTSTTTBCTTSCBCBCTTSBB---------SSCTTEEECGGGBCCCCSCCCSSCCCCCCCHHHHHHHH
T ss_pred             EEcCCCcCchhhhccccccCCCCcEEeChhccC---------CCCCCEEEEEEEeccCCcCCCcCCCCCCcHHHHHHHHH
Confidence            99999987632      3455677777776552         2589999999886432             345788999


Q ss_pred             HHHHHHHc
Q 013303          334 KWIASVLS  341 (446)
Q Consensus       334 ~~~a~~l~  341 (446)
                      +.+|+++.
T Consensus       333 ~~aA~ni~  340 (437)
T 3sx6_A          333 SAAVHNIK  340 (437)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998876

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=99.94  E-value=5.1e-28  Score=244.96  Aligned_cols=297  Identities=14%  Similarity=0.136  Sum_probs=182.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG   79 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~   79 (446)
                      .+||+|||||+||++||..|++.  |.+|+|||+++.++...            +.+++.++......     . ...+.
T Consensus        11 ~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r------------~~lsk~l~~~~~~~-----~-~~~~~   72 (493)
T 1m6i_A           11 HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMR------------PPLSKELWFSDDPN-----V-TKTLR   72 (493)
T ss_dssp             EEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCS------------GGGGTGGGCC--CT-----H-HHHCE
T ss_pred             cCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCC------------CCCCHHhhcCCccc-----h-hhccc
Confidence            36899999999999999999887  78999999987654110            11111111111000     0 00011


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEE
Q 013303           80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV  159 (446)
Q Consensus        80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VV  159 (446)
                      |.+++.....- .......|....++.+     ..+.+++  ++++++|+.|+...   ++|++.++.    ++.||+||
T Consensus        73 ~~~~~~~~~~~-~~~~~~~~~~~~~l~~-----~~~~gv~--~~~g~~v~~id~~~---~~V~~~~g~----~i~yd~lv  137 (493)
T 1m6i_A           73 FKQWNGKERSI-YFQPPSFYVSAQDLPH-----IENGGVA--VLTGKKVVQLDVRD---NMVKLNDGS----QITYEKCL  137 (493)
T ss_dssp             EECTTSCEEES-BSSCGGGSBCTTTTTT-----STTCEEE--EEETCCEEEEEGGG---TEEEETTSC----EEEEEEEE
T ss_pred             ccccccccccc-cccchHhhcchhhhhh-----hhcCCeE--EEcCCEEEEEECCC---CEEEECCCC----EEECCEEE
Confidence            11111100000 0000001111111100     1233554  77889999998754   677776543    78999999


Q ss_pred             EccCCCCCCccCCCCCCCC--CCccEEEeeecCCCC-----CCCCCEEEEEecCCcHHHHHHHHhc----cCCEEEEEEe
Q 013303          160 VCNGHFSVPRLAQVPGIDS--WPGKQMHSHNYRIPN-----PFQDQVVILIGHYASGLDIKRDLAG----FAKEVHIASR  228 (446)
Q Consensus       160 vAtG~~s~p~~p~i~G~~~--~~g~~~hs~~~~~~~-----~~~~k~VvVVG~G~sg~eia~~l~~----~~~~V~l~~r  228 (446)
                      +|||  +.|+.|+++|...  +...+.+.....+..     ...+++|+|||+|.+|+|+|..|++    .+.+|+++.+
T Consensus       138 iATG--s~p~~~~~~~~~~~~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~  215 (493)
T 1m6i_A          138 IATG--GTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFP  215 (493)
T ss_dssp             ECCC--EEECCCHHHHTSCHHHHHTEEECCSHHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECS
T ss_pred             ECCC--CCCCCCCCcccccccccCceEEEcCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEec
Confidence            9999  7888776655321  111222211111100     1247999999999999999999987    4678999987


Q ss_pred             cCC------cc----cc-ccCCCCC-CeeeccceeEEccCC---cEEecCCcEEeecEEEEecCccCCCCCCCC------
Q 013303          229 SVA------DE----TH-EKQPGYD-NMWLHSMVERANEDG---TVVFRNGRVVSADVIMHCTGYKYNYPFLET------  287 (446)
Q Consensus       229 ~~~------~~----~~-~~~~~~~-~v~~~~~v~~i~~~~---~v~~~dG~~~~~D~vi~atG~~~~~~~l~~------  287 (446)
                      .+.      +.    .+ +.+.+.+ ++..+..|.++..++   .|.+.||+++++|.||+|+|+.|+.+++..      
T Consensus       216 ~~~~~~~~l~~~~~~~~~~~l~~~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~  295 (493)
T 1m6i_A          216 EKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEID  295 (493)
T ss_dssp             SSSTTTTTSCHHHHHHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECCTTHHHHTCCBC
T ss_pred             CcccccccCCHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCCCccHHHHHHcCCccc
Confidence            642      00    11 1112222 556677888886432   277889999999999999999999887532      


Q ss_pred             --CCeeeeCCCCcccccccccCCCCCCCeEEecCCCccC----------chhHHHHHHHHHHHHHcCCC
Q 013303          288 --NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI----------PFPFFELQSKWIASVLSGRI  344 (446)
Q Consensus       288 --~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~----------~~~~~~~qa~~~a~~l~g~~  344 (446)
                        .|.|.+|+.++          + .|+||++|++....          .++.+..||+.+|+++.|..
T Consensus       296 ~~~ggi~Vd~~l~----------t-~~~IyA~GD~a~~~~~~~g~~~~~~~~~A~~qg~~aa~ni~g~~  353 (493)
T 1m6i_A          296 SDFGGFRVNAELQ----------A-RSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAA  353 (493)
T ss_dssp             TTTCSEECCTTCE----------E-ETTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHTSCC
T ss_pred             cCCCcEEECCCcc----------c-CCCeeEeeeeEeccCcccCccccchHHHHHHHHHHHHHHhcCCC
Confidence              24566776654          4 58999999886321          23478999999999999863

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=99.94  E-value=5.3e-27  Score=237.30  Aligned_cols=278  Identities=13%  Similarity=0.186  Sum_probs=177.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      +++|||||||+||+++|+.|++.+++|+|||+++..    .+.                       .+........+.  
T Consensus        42 KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~----~~~-----------------------PlL~~va~G~l~--   92 (502)
T 4g6h_A           42 KPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYF----LFT-----------------------PLLPSAPVGTVD--   92 (502)
T ss_dssp             SCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEE----ECG-----------------------GGGGGTTTTSSC--
T ss_pred             CCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCc----ccc-----------------------cchhHHhhcccc--
Confidence            468999999999999999999999999999997521    111                       010000000000  


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEE-eCeEEEEEEEcCCCceEEEEEeC--------------
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVR-LHTEVLNARLVESNKWKVKSRKK--------------  146 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~-~~~~V~~v~~~~~~~~~v~~~~~--------------  146 (446)
                                          ..++...+..+.....-.  +. ...+|++|++..   .+|++...              
T Consensus        93 --------------------~~~i~~p~~~~~~~~~~~--v~~~~~~v~~ID~~~---k~V~l~~~~~~~~~~~~~~~~~  147 (502)
T 4g6h_A           93 --------------------EKSIIEPIVNFALKKKGN--VTYYEAEATSINPDR---NTVTIKSLSAVSQLYQPENHLG  147 (502)
T ss_dssp             --------------------GGGGEEEHHHHHTTCSSC--EEEEEEEEEEEEGGG---TEEEEEEEEEEEECSSSCCCCC
T ss_pred             --------------------HHHhhhhHHHHHHhhcCC--eEEEEEEEEEEEhhh---CEEEEeecccceeecccccccc
Confidence                                011111122222111111  22 356889998755   44544321              


Q ss_pred             --CCceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecC--------------------CC--CCCCCCEEEE
Q 013303          147 --DDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYR--------------------IP--NPFQDQVVIL  202 (446)
Q Consensus       147 --~~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~--------------------~~--~~~~~k~VvV  202 (446)
                        .++..++.||+||||||  +.|+.|.+||.++.   .+......                    ..  +.-...+++|
T Consensus       148 ~~~~~~~~i~YD~LViAtG--s~~~~~~ipG~~e~---a~~l~t~~dA~~ir~~l~~~~e~a~~~~~~~~~~~~~~~vvV  222 (502)
T 4g6h_A          148 LHQAEPAEIKYDYLISAVG--AEPNTFGIPGVTDY---GHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVV  222 (502)
T ss_dssp             CCTTCCEEEECSEEEECCC--CEECCTTCTTHHHH---CEECSSHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHTEEEE
T ss_pred             cccCCceEEeCCEEEEcCC--cccccCCccCcccc---cCCCCCHHHHHHHHHHHHHHHHHHhcccccchhhccccceEE
Confidence              12345799999999999  89999999997542   11111000                    00  0011258999


Q ss_pred             EecCCcHHHHHHHHhccC--------------CEEEEEEecCC-----cccc-----ccCCCCC-CeeeccceeEEccCC
Q 013303          203 IGHYASGLDIKRDLAGFA--------------KEVHIASRSVA-----DETH-----EKQPGYD-NMWLHSMVERANEDG  257 (446)
Q Consensus       203 VG~G~sg~eia~~l~~~~--------------~~V~l~~r~~~-----~~~~-----~~~~~~~-~v~~~~~v~~i~~~~  257 (446)
                      ||+|++|+|+|.+|++.+              .+|+++.+.+.     ++.+     +.+.+.+ ++.++..|.++++++
T Consensus       223 vGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~v~~v~~~~  302 (502)
T 4g6h_A          223 VGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMFEKKLSSYAQSHLENTSIKVHLRTAVAKVEEKQ  302 (502)
T ss_dssp             ECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEETTEEEEEECSSE
T ss_pred             ECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccccCCCHHHHHHHHHHHHhcceeeecCceEEEEeCCc
Confidence            999999999999998643              57999998775     1111     1112222 567788899997765


Q ss_pred             c---EEecCCc----EEeecEEEEecCccCCC---------CC-CCCCCeeeeCCCCcccccccccCCCCCCCeEEecCC
Q 013303          258 T---VVFRNGR----VVSADVIMHCTGYKYNY---------PF-LETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIP  320 (446)
Q Consensus       258 ~---v~~~dG~----~~~~D~vi~atG~~~~~---------~~-l~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~  320 (446)
                      .   ..+.||+    ++++|.||+|+|.+|+.         +. .+..|.|.||+.++.         .++|+||++|++
T Consensus       303 ~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~~~~~~l~~~~~~~~~~~g~I~Vd~~lq~---------~~~~~IfAiGD~  373 (502)
T 4g6h_A          303 LLAKTKHEDGKITEETIPYGTLIWATGNKARPVITDLFKKIPEQNSSKRGLAVNDFLQV---------KGSNNIFAIGDN  373 (502)
T ss_dssp             EEEEEECTTSCEEEEEEECSEEEECCCEECCHHHHHHHHHSGGGTTCCSSEEBCTTSBB---------TTCSSEEECGGG
T ss_pred             eEEEEEecCcccceeeeccCEEEEccCCcCCHHHHhHHHhccccccCCCceeECCcccc---------CCCCCEEEEEcc
Confidence            2   2235664    58899999999999871         11 244577999988763         358999999998


Q ss_pred             Ccc---CchhHHHHHHHHHHHHHcCCCCCC
Q 013303          321 QKV---IPFPFFELQSKWIASVLSGRIVLP  347 (446)
Q Consensus       321 ~~~---~~~~~~~~qa~~~a~~l~g~~~lp  347 (446)
                      ...   ...+.+..||+++|++|.+....|
T Consensus       374 a~~~~p~~a~~A~qqg~~~A~ni~~~~~~~  403 (502)
T 4g6h_A          374 AFAGLPPTAQVAHQEAEYLAKNFDKMAQIP  403 (502)
T ss_dssp             EESSSCCCHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cCCCCCCchHHHHHHHHHHHHHHHHHhccc
Confidence            633   345678899999999997765544

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=99.93  E-value=1.3e-26  Score=243.35  Aligned_cols=244  Identities=22%  Similarity=0.339  Sum_probs=177.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      ++||+|||||+||+++|..|++.|++|+|||+++.+||.|.....                                   
T Consensus       373 ~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~~~~-----------------------------------  417 (671)
T 1ps9_A          373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQ-----------------------------------  417 (671)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTT-----------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeecccc-----------------------------------
Confidence            479999999999999999999999999999999999998875310                                   


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEE-EEcEEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE-TFDAVVV  160 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~-~~d~VVv  160 (446)
                       +|             ......++.+++...+++++++  +++++.|..                .    .+ .||+||+
T Consensus       418 -~~-------------~~~~~~~~~~~~~~~~~~~gv~--~~~~~~v~~----------------~----~~~~~d~lvi  461 (671)
T 1ps9_A          418 -IP-------------GKEEFYETLRYYRRMIEVTGVT--LKLNHTVTA----------------D----QLQAFDETIL  461 (671)
T ss_dssp             -ST-------------TCTTHHHHHHHHHHHHHHHTCE--EEESCCCCS----------------S----SSCCSSEEEE
T ss_pred             -CC-------------CHHHHHHHHHHHHHHHHHcCCE--EEeCcEecH----------------H----HhhcCCEEEE
Confidence             00             0011245667788888888887  777765431                0    13 7999999


Q ss_pred             ccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCC-------------------
Q 013303          161 CNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAK-------------------  221 (446)
Q Consensus       161 AtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~-------------------  221 (446)
                      |||  +.|+.|.+||.+.  ..++++.++.....+.+++|+|||+|.+|+|+|..|++.|.                   
T Consensus       462 AtG--~~p~~~~i~G~~~--~~v~~~~~~l~~~~~~~~~VvVIGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~  537 (671)
T 1ps9_A          462 ASG--IVPRTPPIDGIDH--PKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSL  537 (671)
T ss_dssp             CCC--EEECCCCCBTTTS--TTEEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTC
T ss_pred             ccC--CCcCCCCCCCCCC--CcEeeHHHHhhCCCCCCCeEEEECCChhHHHHHHHHHhcCCCcccchhhhhhhhcccccc
Confidence            999  7999999999865  34666666555555678999999999999999999998764                   


Q ss_pred             ------------------EEEEEEecCC--cccc---------ccCCCC-CCeeeccceeEEccCCcEEe-cCC--cEEe
Q 013303          222 ------------------EVHIASRSVA--DETH---------EKQPGY-DNMWLHSMVERANEDGTVVF-RNG--RVVS  268 (446)
Q Consensus       222 ------------------~V~l~~r~~~--~~~~---------~~~~~~-~~v~~~~~v~~i~~~~~v~~-~dG--~~~~  268 (446)
                                        +|+++.+.+.  ...+         ..+.+. .++.....|+++.+++ +.+ .+|  ++++
T Consensus       538 ~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~~~l~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~-v~~~~~G~~~~i~  616 (671)
T 1ps9_A          538 QQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDG-LHVVINGETQVLA  616 (671)
T ss_dssp             CSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEETTE-EEEEETTEEEEEC
T ss_pred             cccccccccccccCCCCcEEEEEEecchhhccccccccHHHHHHHHHhcCCEEEeCcEEEEEeCCe-EEEecCCeEEEEe
Confidence                              4555555432  0000         111111 2455566788887654 666 688  5689


Q ss_pred             ecEEEEecCccCCCCCCCCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCccCc--hhHHHHHHHHHHHHH
Q 013303          269 ADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVIP--FPFFELQSKWIASVL  340 (446)
Q Consensus       269 ~D~vi~atG~~~~~~~l~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~~--~~~~~~qa~~~a~~l  340 (446)
                      +|.||+|+|++|+..++..   +  +.             . .+++|++|++.....  ...+..||..+|.+|
T Consensus       617 ~D~Vi~a~G~~p~~~l~~~---l--~~-------------~-g~~v~aiGD~~~~~~~~~~~A~~~g~~aA~~i  671 (671)
T 1ps9_A          617 VDNVVICAGQEPNRALAQP---L--ID-------------S-GKTVHLIGGCDVAMELDARRAIAQGTRLALEI  671 (671)
T ss_dssp             CSEEEECCCEEECCTTHHH---H--HT-------------T-TCCEEECGGGTCCSSCCHHHHHHHHHHHHHHC
T ss_pred             CCEEEECCCccccHHHHHH---H--Hh-------------c-CCCEEEECCcCccCchhHHHHHHHHHHHHHhC
Confidence            9999999999999877642   1  00             1 468999998865443  567888999998864

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=99.92  E-value=1.1e-25  Score=245.71  Aligned_cols=263  Identities=18%  Similarity=0.189  Sum_probs=174.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCccc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~   80 (446)
                      .+||+||||||||++||..|++.|+ +|+|||+.+.+||.+.+.-                                   
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~~~i-----------------------------------  231 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEI-----------------------------------  231 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTS-----------------------------------
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccccccC-----------------------------------
Confidence            3689999999999999999999999 7999999999999876520                                   


Q ss_pred             CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEE
Q 013303           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV  160 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVv  160 (446)
                                      +.|....++.++..++.+++|++  +++++.|..        +.|++.++    .++.||+|||
T Consensus       232 ----------------p~~~~~~~~~~~~~~~~~~~gv~--~~~~~~v~~--------~~v~~~~~----~~~~~d~vvl  281 (1025)
T 1gte_A          232 ----------------PQFRLPYDVVNFEIELMKDLGVK--IICGKSLSE--------NEITLNTL----KEEGYKAAFI  281 (1025)
T ss_dssp             ----------------CTTTSCHHHHHHHHHHHHTTTCE--EEESCCBST--------TSBCHHHH----HHTTCCEEEE
T ss_pred             ----------------CcccCCHHHHHHHHHHHHHCCcE--EEcccEecc--------ceEEhhhc----CccCCCEEEE
Confidence                            01111145667777888888887  777776521        12222221    1357999999


Q ss_pred             ccCCCCCCccCCC-CCCCCCCccEEEeeecC--------------C-CCCCCCCEEEEEecCCcHHHHHHHHhccCC-EE
Q 013303          161 CNGHFSVPRLAQV-PGIDSWPGKQMHSHNYR--------------I-PNPFQDQVVILIGHYASGLDIKRDLAGFAK-EV  223 (446)
Q Consensus       161 AtG~~s~p~~p~i-~G~~~~~g~~~hs~~~~--------------~-~~~~~~k~VvVVG~G~sg~eia~~l~~~~~-~V  223 (446)
                      |||. ..|+.+++ +|++...+ ++++.++.              . .....+++|+|||+|.+|+|+|..+++.|. +|
T Consensus       282 AtGa-~~p~~l~~~~G~~~~~g-v~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~VvVIGgG~~g~e~A~~~~~~G~~~V  359 (1025)
T 1gte_A          282 GIGL-PEPKTDDIFQGLTQDQG-FYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRV  359 (1025)
T ss_dssp             CCCC-CEECCCGGGTTCCTTTT-EEEHHHHHHHHHHHHCBTTBSCCCCCCCCCSEEEEECSSHHHHHHHHHHHHTTCSEE
T ss_pred             ecCC-CCCCCCCCCCCCCCCCC-EEEhHHHHHHHHhhcccccccccccccccCCcEEEECCChHHHHHHHHHHHcCCCEE
Confidence            9993 15766554 56643323 44433321              1 112346799999999999999999999985 89


Q ss_pred             EEEEecCC------ccccccCCCCC-CeeeccceeEEcc-CCc---EEec------CC---------cEEeecEEEEecC
Q 013303          224 HIASRSVA------DETHEKQPGYD-NMWLHSMVERANE-DGT---VVFR------NG---------RVVSADVIMHCTG  277 (446)
Q Consensus       224 ~l~~r~~~------~~~~~~~~~~~-~v~~~~~v~~i~~-~~~---v~~~------dG---------~~~~~D~vi~atG  277 (446)
                      ++++|++.      +..+..+.+.+ .+.....+.++.. ++.   |++.      +|         .++++|.||+|+|
T Consensus       360 tvv~r~~~~~~~~~~~e~~~~~~~Gv~~~~~~~~~~i~~~~g~v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G  439 (1025)
T 1gte_A          360 FLVFRKGFVNIRAVPEEVELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFG  439 (1025)
T ss_dssp             EEECSSCGGGCCSCHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSC
T ss_pred             EEEEecChhhCCCCHHHHHHHHHcCCEEEeCCCceEEEccCCeEEEEEEEEeEEcCCCCcccCCCceEEEECCEEEECCC
Confidence            99998763      11111111112 3334445556543 232   3332      22         3588999999999


Q ss_pred             ccCC-CCCC--------CCCCeeeeCC-CCcccccccccCCCCCCCeEEecCCCc-cCchhHHHHHHHHHHHHHc
Q 013303          278 YKYN-YPFL--------ETNGIVTVDD-NRVGPLYKHVFPPVLAPGLSFVGIPQK-VIPFPFFELQSKWIASVLS  341 (446)
Q Consensus       278 ~~~~-~~~l--------~~~g~i~~~~-~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~~~~~~~~qa~~~a~~l~  341 (446)
                      +.|+ ..++        ++.|.|.+|+ ..+          ++.|+||++|++.. ......+..||+.+|+++.
T Consensus       440 ~~~~~~~l~~~~~gl~~~~~G~I~vd~~~~~----------Ts~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~i~  504 (1025)
T 1gte_A          440 SVLRDPKVKEALSPIKFNRWDLPEVDPETMQ----------TSEPWVFAGGDIVGMANTTVESVNDGKQASWYIH  504 (1025)
T ss_dssp             EECCCHHHHHHTTTSCBCTTSSBCCCTTTCB----------CSSTTEEECSGGGCSCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCchhhhhcccCceECCCCCEEECCCCCc----------cCCCCEEEeCCCCCCchHHHHHHHHHHHHHHHHH
Confidence            9874 2232        2345566664 333          55899999999875 3345677889999999886

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.91  E-value=1.2e-24  Score=220.13  Aligned_cols=265  Identities=18%  Similarity=0.193  Sum_probs=177.1

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d   82 (446)
                      +||+|||||++|+++|..|++. ++|+|||+++.+||.|....                  ..           .++   
T Consensus       109 ~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~------------------~~-----------~~g---  155 (493)
T 1y56_A          109 VDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKG------------------IK-----------QEG---  155 (493)
T ss_dssp             ESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTC------------------SE-----------ETT---
T ss_pred             CCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccc------------------cc-----------cCC---
Confidence            5899999999999999999999 99999999999999887521                  00           000   


Q ss_pred             CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEcc
Q 013303           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN  162 (446)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAt  162 (446)
                      ++.               ...++...+.+.. ..++.  ++++++|.++.... ..+.+...+ .++...+.||+||+||
T Consensus       156 ~~~---------------~~~~~~~~l~~~l-~~~v~--~~~~~~v~~i~~~~-~~~~~~~~~-~~~~~~~~~d~lvlAt  215 (493)
T 1y56_A          156 FNK---------------DSRKVVEELVGKL-NENTK--IYLETSALGVFDKG-EYFLVPVVR-GDKLIEILAKRVVLAT  215 (493)
T ss_dssp             TTE---------------EHHHHHHHHHHTC-CTTEE--EETTEEECCCEECS-SSEEEEEEE-TTEEEEEEESCEEECC
T ss_pred             CCC---------------CHHHHHHHHHHHH-hcCCE--EEcCCEEEEEEcCC-cEEEEEEec-CCeEEEEECCEEEECC
Confidence            000               1234444333322 33444  77899999998765 556655433 2333478999999999


Q ss_pred             CCCCCCccCCCCCCCCCCccEEEeeecC----CCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCccccccC
Q 013303          163 GHFSVPRLAQVPGIDSWPGKQMHSHNYR----IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQ  238 (446)
Q Consensus       163 G~~s~p~~p~i~G~~~~~g~~~hs~~~~----~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~~~~~~~  238 (446)
                      |  +.|+.|.+||.+. ++ +++..++.    ......+++++|||+|.+|+|  ..+.+.|.+                
T Consensus       216 G--a~~~~~~~~g~~~-~g-v~~~~~~~~~~~~~~~~~~~~vvViGgG~~gle--~~l~~~GV~----------------  273 (493)
T 1y56_A          216 G--AIDSTMLFENNDM-PG-VFRRDFALEVMNVWEVAPGRKVAVTGSKADEVI--QELERWGID----------------  273 (493)
T ss_dssp             C--EEECCCCCTTTTS-TT-EEEHHHHHHHHHTSCBCSCSEEEEESTTHHHHH--HHHHHHTCE----------------
T ss_pred             C--CCccCCCCCCCCC-CC-EEEcHHHHHHHHhcccCCCCEEEEECCCHHHHH--HHHHhCCcE----------------
Confidence            9  7899999999763 33 44433221    112346799999999999999  334444433                


Q ss_pred             CCCCCeeeccceeEEccCCc---EEecCCcEEeecEEEEecCccCCCCCCCCCCe-eeeCCCCcccccccccCCCCCCCe
Q 013303          239 PGYDNMWLHSMVERANEDGT---VVFRNGRVVSADVIMHCTGYKYNYPFLETNGI-VTVDDNRVGPLYKHVFPPVLAPGL  314 (446)
Q Consensus       239 ~~~~~v~~~~~v~~i~~~~~---v~~~dG~~~~~D~vi~atG~~~~~~~l~~~g~-i~~~~~~~~~l~~~~~~~~~~p~l  314 (446)
                           +.....|.++..++.   +.+.||+++++|.||+|+|+.|+..++...|. +..++....+..+..+.  +.|+|
T Consensus       274 -----v~~~~~v~~i~~~~~v~~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~g~~~~~~~~g~i~~vd~~~~--s~~~v  346 (493)
T 1y56_A          274 -----YVHIPNVKRVEGNEKVERVIDMNNHEYKVDALIFADGRRPDINPITQAGGKLRFRRGYYSPVLDEYHR--IKDGI  346 (493)
T ss_dssp             -----EEECSSEEEEECSSSCCEEEETTCCEEECSEEEECCCEEECCHHHHHTTCCEEEETTEEEECCCTTSE--EETTE
T ss_pred             -----EEeCCeeEEEecCCceEEEEeCCCeEEEeCEEEECCCcCcCchHHHhcCCCccccCCceeeccccccC--cCCCE
Confidence                 333445556654332   66788999999999999999999877543331 11122111111111112  37999


Q ss_pred             EEecCCCccCchhHHHHHHHHHHHHHcCCCCCCCH
Q 013303          315 SFVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQ  349 (446)
Q Consensus       315 ~~iG~~~~~~~~~~~~~qa~~~a~~l~g~~~lp~~  349 (446)
                      |++|++........+..||+.+|.++.+.+.+...
T Consensus       347 ya~GD~~~~~~~~~A~~~g~~aa~~i~~~lg~~~~  381 (493)
T 1y56_A          347 YVAGSAVSIKPHYANYLEGKLVGAYILKEFGYDAQ  381 (493)
T ss_dssp             EECSTTTCCCCHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             EEEeccCCccCHHHHHHHHHHHHHHHHHHcCCCcc
Confidence            99999887667778899999999999887655443

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=99.90  E-value=3.7e-23  Score=204.22  Aligned_cols=270  Identities=18%  Similarity=0.133  Sum_probs=164.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCC--CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMG   79 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g--~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~   79 (446)
                      .|+|+|||||+||+++|..|++.+  .+|+|||+++...    +.+                   .+..    .....  
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~----~~p-------------------~~~~----v~~g~--   52 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYY----TCY-------------------MSNE----VIGGD--   52 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEE----CST-------------------THHH----HHHTS--
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCC----Ccc-------------------CHHH----HhcCC--
Confidence            489999999999999999999876  5899999976321    100                   0000    00000  


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEE
Q 013303           80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV  159 (446)
Q Consensus        80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VV  159 (446)
                         .+..                 ++..-+.. ....+++  + ...+|+.|++..   .+|++.++.    ++.||+||
T Consensus        53 ---~~~~-----------------~~~~~~~~-~~~~gv~--~-i~~~v~~id~~~---~~v~~~~g~----~i~yd~Lv  101 (401)
T 3vrd_B           53 ---RELA-----------------SLRVGYDG-LRAHGIQ--V-VHDSALGIDPDK---KLVKTAGGA----EFAYDRCV  101 (401)
T ss_dssp             ---SCGG-----------------GGEECSHH-HHHTTCE--E-ECSCEEEEETTT---TEEEETTSC----EEECSEEE
T ss_pred             ---CCHH-----------------HHhhCHHH-HHHCCCE--E-EEeEEEEEEccC---cEEEecccc----eeecceee
Confidence               0000                 00000111 2234665  3 356899998754   566666654    79999999


Q ss_pred             EccCCCCCCccCCCCCCCCCCc-cEEEeeecCC--------CCCCCCCEEEEEecCC-------cHHHHHHHH----hcc
Q 013303          160 VCNGHFSVPRLAQVPGIDSWPG-KQMHSHNYRI--------PNPFQDQVVILIGHYA-------SGLDIKRDL----AGF  219 (446)
Q Consensus       160 vAtG~~s~p~~p~i~G~~~~~g-~~~hs~~~~~--------~~~~~~k~VvVVG~G~-------sg~eia~~l----~~~  219 (446)
                      +|||  +.++.|.+||.+...+ ...|+.....        ...+.....+|+++|.       .+.|++.++    .+.
T Consensus       102 iAtG--~~~~~~~i~G~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~i~~~~a~~e~~~~~a~~~~~~  179 (401)
T 3vrd_B          102 VAPG--IDLLYDKIEGYSEALAAKLPHAWKAGEQTALLRRQLESMDDGGVVIIAPPAPPFRCPPGPYERASQIAHYLKAH  179 (401)
T ss_dssp             ECCC--EEECGGGSBTCCSGGGGTSCCCSSCSHHHHHHHHHHHHSCTTCEEEEECCSSSCBCTTHHHHHHHHHHHHHHHH
T ss_pred             eccC--CccccCCccCchhhcccCccceeccHHHHHHHHHHHHhcccCCcEEEecCCccEEeehHHHHHHHHHHHHHHhc
Confidence            9999  8999999999875322 1222211100        0112233444444332       344444444    333


Q ss_pred             --CCEEEEEEecCCc-----------cccccCCCCC--CeeeccceeEEccC---CcEEecCCcEEeecEEEEecCccCC
Q 013303          220 --AKEVHIASRSVAD-----------ETHEKQPGYD--NMWLHSMVERANED---GTVVFRNGRVVSADVIMHCTGYKYN  281 (446)
Q Consensus       220 --~~~V~l~~r~~~~-----------~~~~~~~~~~--~v~~~~~v~~i~~~---~~v~~~dG~~~~~D~vi~atG~~~~  281 (446)
                        ..+|+++.+.+..           ..+....+..  ++.....+..++.+   ..+.+.||+++++|.|++++|.+++
T Consensus       180 ~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vi~~~g~~~~  259 (401)
T 3vrd_B          180 KSKSKVIILDNSQTFSKQAQFTKGWERLYGFGTENALIEWHPGPDAAVVKTDTEAMTVETSFGETFKAAVINLIPPQRAG  259 (401)
T ss_dssp             CTTCEEEEECSSSSCTTHHHHHHHHHHHSCTTSTTCSEEEECTTTTCEEEEETTTTEEEETTSCEEECSEEEECCCEEEC
T ss_pred             CCCCEEEEEcccccccccccccHHHHHHHHHHHHhcCcEEEeCceEEEEEecccceEEEcCCCcEEEeeEEEEecCcCCc
Confidence              4689998876641           1112222222  44555666666533   2388999999999999999999986


Q ss_pred             -----CCCCCCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCccC----chhHHHHHHHHHHHHHc
Q 013303          282 -----YPFLETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI----PFPFFELQSKWIASVLS  341 (446)
Q Consensus       282 -----~~~l~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~----~~~~~~~qa~~~a~~l~  341 (446)
                           ....++.|+|.+|+..        +..+++||||++|++....    ....+..||+++|++|.
T Consensus       260 ~~~~~~gl~~~~G~i~VD~~t--------l~~t~~p~VfAiGDva~~~~~pk~a~~A~~qa~v~A~ni~  320 (401)
T 3vrd_B          260 KIAQSASLTNDSGWCPVDIRT--------FESSLQPGIHVIGDACNAAPMPKSAYSANSQAKVAAAAVV  320 (401)
T ss_dssp             HHHHHTTCCCTTSSBCBCTTT--------CBBSSSTTEEECGGGBCCTTSCBSHHHHHHHHHHHHHHHH
T ss_pred             hhHhhccccccCCCEEECCCc--------ceecCCCCEEEecccccCCCCCchHHHHHHHHHHHHHHHH
Confidence                 2334566777777652        1125589999999976432    34677899999999875

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=99.88  E-value=7.2e-24  Score=211.03  Aligned_cols=268  Identities=14%  Similarity=0.139  Sum_probs=155.6

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCC--CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCc
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM   78 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g--~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~   78 (446)
                      |.|+|+|||||+||+++|+.|++.+  ++|+|||+++..    .+.+                   .+    .......+
T Consensus         1 M~K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~----~~~p-------------------~l----~~v~~g~~   53 (430)
T 3hyw_A            1 MAKHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYF----GFTP-------------------AF----PHLAMGWR   53 (430)
T ss_dssp             -CCEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEE----ECGG-------------------GH----HHHHHTCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCC----ccCc-------------------cH----HHHhcCCC
Confidence            7789999999999999999999865  799999997632    1110                   00    00000000


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEE
Q 013303           79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV  158 (446)
Q Consensus        79 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~V  158 (446)
                      ...+.                      ...+.++.++.+++  +. ..+|++|++..   .+|+++++.    ++.||+|
T Consensus        54 ~~~~i----------------------~~~~~~~~~~~gv~--~i-~~~v~~Id~~~---~~V~~~~g~----~i~YD~L  101 (430)
T 3hyw_A           54 KFEDI----------------------SVPLAPLLPKFNIE--FI-NEKAESIDPDA---NTVTTQSGK----KIEYDYL  101 (430)
T ss_dssp             CGGGS----------------------EEESTTTGGGGTEE--EE-CSCEEEEETTT---TEEEETTCC----EEECSEE
T ss_pred             CHHHh----------------------hhcHHHHHHHCCcE--EE-EeEEEEEECCC---CEEEECCCC----EEECCEE
Confidence            00000                      00111223344554  43 45899998754   677776654    7999999


Q ss_pred             EEccCCCCCCccCCCCCCCCCCccEEEee---ecCC-CC-CCCCCEEEEEecCC------cHHHHHHHH----hccC---
Q 013303          159 VVCNGHFSVPRLAQVPGIDSWPGKQMHSH---NYRI-PN-PFQDQVVILIGHYA------SGLDIKRDL----AGFA---  220 (446)
Q Consensus       159 VvAtG~~s~p~~p~i~G~~~~~g~~~hs~---~~~~-~~-~~~~k~VvVVG~G~------sg~eia~~l----~~~~---  220 (446)
                      |||||  +.+. +++||.+...-.+....   ..+. .. ...++.++|+|++.      .+.|++..+    .+.+   
T Consensus       102 ViAtG--~~~~-~~i~G~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~vv~gg~~gve~~~~~~e~a~~~~~~l~~~g~~~  178 (430)
T 3hyw_A          102 VIATG--PKLV-FGAEGQEENSTSICTAEHALETQKKLQELYANPGPVVIGAIPGVSCFGPAYEFALMLHYELKKRGIRY  178 (430)
T ss_dssp             EECCC--CEEE-CCSBTHHHHSCCCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGG
T ss_pred             EEeCC--CCcc-CCccCcccCcCCcccHHHHHHHHHHHHhhccCCceEEEeCCCcEEEhHHHHHHHHHHHHHHHHhcccc
Confidence            99999  5554 46788653110000000   0000 00 11244566666653      223444433    2333   


Q ss_pred             -CEEEEEEecCCc------------cccccC-CCC-CCeeeccceeEEccCCcEEecC--C--cEEeecEEEEecCccCC
Q 013303          221 -KEVHIASRSVAD------------ETHEKQ-PGY-DNMWLHSMVERANEDGTVVFRN--G--RVVSADVIMHCTGYKYN  281 (446)
Q Consensus       221 -~~V~l~~r~~~~------------~~~~~~-~~~-~~v~~~~~v~~i~~~~~v~~~d--G--~~~~~D~vi~atG~~~~  281 (446)
                       .+|+++...+..            ..+.++ .+. -++..+..|++++.++ +.+++  |  +++++|.+|+|+|.+++
T Consensus       179 ~v~v~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~GV~~~~~~~v~~v~~~~-~~~~~~~g~~~~i~~d~vi~~~G~~~~  257 (430)
T 3hyw_A          179 KVPMTFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIANVAVKAIEPDK-VIYEDLNGNTHEVPAKFTMFMPSFQGP  257 (430)
T ss_dssp             GCCEEEECSSSSTTCTTTTCSTTHHHHHHHHHHHTTCEEECSCEEEEECSSE-EEEECTTSCEEEEECSEEEEECEEECC
T ss_pred             cceeeeecccchhhhccchhhHHHHHHHHHHHHhCCeEEEeCceEEEEeCCc-eEEEeeCCCceEeecceEEEeccCCCc
Confidence             367777655431            011111 111 2566778899997654 66654  3  46899999999999987


Q ss_pred             CCCC---------CCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCccC-------------chhHHHHHHHHHHHH
Q 013303          282 YPFL---------ETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI-------------PFPFFELQSKWIASV  339 (446)
Q Consensus       282 ~~~l---------~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~-------------~~~~~~~qa~~~a~~  339 (446)
                       +++         +..|.+.+|+.++.         +++||||++|++...+             ....+..||+++|++
T Consensus       258 -~~~~~~~~~l~~~~~g~i~vd~~lq~---------t~~~~IfAiGD~a~~p~~~~~~~~~~~pk~a~~A~~qg~~~A~N  327 (430)
T 3hyw_A          258 -EVVASAGDKVANPANKMVIVNRCFQN---------PTYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHN  327 (430)
T ss_dssp             -HHHHTTCTTTBCTTTCCBCCCTTSBC---------SSSTTEEECSTTBCCCCSSCCSSCCCCCCCHHHHHHHHHHHHHH
T ss_pred             -hHHHhcccccccCCceEEEecccccC---------CCCCCEEEeccEEecCCcccCcCcCccchHHHHHHHHHHHHHHH
Confidence             222         12344666665542         4589999999886432             234788999999999


Q ss_pred             Hc
Q 013303          340 LS  341 (446)
Q Consensus       340 l~  341 (446)
                      |.
T Consensus       328 i~  329 (430)
T 3hyw_A          328 IV  329 (430)
T ss_dssp             HH
T ss_pred             HH
Confidence            85

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.59  E-value=7.4e-15  Score=127.86  Aligned_cols=112  Identities=27%  Similarity=0.419  Sum_probs=82.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      ++||+|||||++|+.+|..|++.|.+|+|+|+.+..   +...                              ..+..++
T Consensus         1 ~~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~---~~~~------------------------------~~~~~~~   47 (180)
T 2ywl_A            1 MWDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSK---VKGV------------------------------SRVPNYP   47 (180)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCT---TTTC------------------------------SCCCCST
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCc---ccCc------------------------------hhhhccC
Confidence            479999999999999999999999999999997622   1000                              0000011


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                      .+             +......++.+++.+.+++.+++  ++++ +|++++..+ +.|.|++.++     ++.+|.||+|
T Consensus        48 ~~-------------~~~~~~~~~~~~l~~~~~~~gv~--v~~~-~v~~i~~~~-~~~~v~~~~g-----~i~ad~vI~A  105 (180)
T 2ywl_A           48 GL-------------LDEPSGEELLRRLEAHARRYGAE--VRPG-VVKGVRDMG-GVFEVETEEG-----VEKAERLLLC  105 (180)
T ss_dssp             TC-------------TTCCCHHHHHHHHHHHHHHTTCE--EEEC-CCCEEEECS-SSEEEECSSC-----EEEEEEEEEC
T ss_pred             CC-------------cCCCCHHHHHHHHHHHHHHcCCE--EEeC-EEEEEEEcC-CEEEEEECCC-----EEEECEEEEC
Confidence            11             11234688999999999999987  8889 999998866 5677766432     6899999999


Q ss_pred             cCCCCCCcc
Q 013303          162 NGHFSVPRL  170 (446)
Q Consensus       162 tG~~s~p~~  170 (446)
                      +|  ..|++
T Consensus       106 ~G--~~~~~  112 (180)
T 2ywl_A          106 TH--KDPTL  112 (180)
T ss_dssp             CT--TCCHH
T ss_pred             CC--CCCCc
Confidence            99  55544

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.54  E-value=4.9e-15  Score=145.51  Aligned_cols=204  Identities=17%  Similarity=0.331  Sum_probs=118.1

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCC--CCCCCCCCCCCccCCc-c-CceeecCCCCCc
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETES--DPLGVDPNRYPVHSSL-Y-KSLRVNLPRELM   78 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~--~~~g~~p~~~~~~~~~-y-~~l~~~~~~~~~   78 (446)
                      +||+|||||++|+++|..|++.|.+|+|||+.+.+|+.|........  ...++.|.+.+..... . ..+....+...+
T Consensus         5 ~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   84 (401)
T 2gqf_A            5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDFI   84 (401)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHHHH
Confidence            69999999999999999999999999999999888665432211000  0001111100000000 0 000000000000


Q ss_pred             cc---CCCCCCcCCCCCCCCCCCCC--CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEc----CCCceEEEEEeCCCc
Q 013303           79 GF---QAYPFVARNYEGSVDLRRYP--GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV----ESNKWKVKSRKKDDV  149 (446)
Q Consensus        79 ~~---~d~~~~~~~~~~~~~~~~~~--~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~----~~~~~~v~~~~~~~~  149 (446)
                      .+   ...++...     .....||  ...++.+++.+.+++.|++  ++++++|+++...    + +.|.|++.++   
T Consensus        85 ~~~~~~Gi~~~~~-----~~g~~~p~~~~~~l~~~L~~~~~~~Gv~--i~~~~~v~~i~~~~~g~~-~~~~v~~~~g---  153 (401)
T 2gqf_A           85 SLVAEQGITYHEK-----ELGQLFCDEGAEQIVEMLKSECDKYGAK--ILLRSEVSQVERIQNDEK-VRFVLQVNST---  153 (401)
T ss_dssp             HHHHHTTCCEEEC-----STTEEEETTCTHHHHHHHHHHHHHHTCE--EECSCCEEEEEECCSCSS-CCEEEEETTE---
T ss_pred             HHHHhCCCceEEC-----cCCEEccCCCHHHHHHHHHHHHHHCCCE--EEeCCEEEEEEcccCcCC-CeEEEEECCC---
Confidence            00   01111110     0112233  6688999999999999987  9999999999876    4 5677765321   


Q ss_pred             eEEEEEcEEEEccCCCCCCc------------------cCCCCCCCCCCccEEEeee-cCCCCCCCC----CEEEEEe--
Q 013303          150 VEEETFDAVVVCNGHFSVPR------------------LAQVPGIDSWPGKQMHSHN-YRIPNPFQD----QVVILIG--  204 (446)
Q Consensus       150 ~~~~~~d~VVvAtG~~s~p~------------------~p~i~G~~~~~g~~~hs~~-~~~~~~~~~----k~VvVVG--  204 (446)
                        ++.+|.||+|||.++.|.                  .|..|++..|.   +++.. +.  ..+.+    .+++|+|  
T Consensus       154 --~i~ad~VVlAtG~~s~p~~g~~G~g~~la~~~G~~i~~~~p~l~~~~---~~~~~~~~--~~l~g~~~~~~~~i~G~~  226 (401)
T 2gqf_A          154 --QWQCKNLIVATGGLSMPGLGATPFGYQIAEQFGIPVIPPRASLVPFT---YRETDKFL--TALSGISLPVTITALCGK  226 (401)
T ss_dssp             --EEEESEEEECCCCSSCGGGTCCSHHHHHHHHTTCCEEEEEEESCCEE---CCGGGGGG--GGGTTCEEEEEEEETTSC
T ss_pred             --EEECCEEEECCCCccCCCCCCChHHHHHHHHCCCCcccCcceeecee---cCCchhhc--ccCCCeeeeeEEEEcCCc
Confidence              689999999999777554                  24444443321   11211 10  11222    3455558  


Q ss_pred             -------------cCCcHHHHHHHHhccCCEEEE
Q 013303          205 -------------HYASGLDIKRDLAGFAKEVHI  225 (446)
Q Consensus       205 -------------~G~sg~eia~~l~~~~~~V~l  225 (446)
                                   +|+.+++++..+.. +.+|++
T Consensus       227 ~~~g~~l~t~~g~sG~~~l~~s~~~~~-~~~~~i  259 (401)
T 2gqf_A          227 SFYNQLLFTHRGISGPAVLQISNYWQP-TESVEI  259 (401)
T ss_dssp             EEEEEEEECSSEEESHHHHHHTTTCCT-TCCEEE
T ss_pred             eEEeCEEEECCCccHHHHHHHHHHHhc-CCEEEE
Confidence                         89999999988866 556665

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.39  E-value=1.9e-12  Score=127.52  Aligned_cols=156  Identities=19%  Similarity=0.330  Sum_probs=92.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCC--CCCCCCCCCCcc--CCccCceeecCCCCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESD--PLGVDPNRYPVH--SSLYKSLRVNLPREL   77 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~--~~g~~p~~~~~~--~~~y~~l~~~~~~~~   77 (446)
                      .+||+|||||++|+++|..|++.|.+|+|||+.+.+|+.+.........  ...+.+......  ...+..+....+...
T Consensus        27 ~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  106 (417)
T 3v76_A           27 KQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQDF  106 (417)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHHHH
Confidence            3699999999999999999999999999999999887654322110000  000000000000  000000000000000


Q ss_pred             ccc---CCCCCCcCCCCCCCCCCCC--CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEE
Q 013303           78 MGF---QAYPFVARNYEGSVDLRRY--PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEE  152 (446)
Q Consensus        78 ~~~---~d~~~~~~~~~~~~~~~~~--~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~  152 (446)
                      +.+   ...++...     .....|  ....++.+.|.+.+++.|+.  ++++++|+++...+ +.|.|.+.++     +
T Consensus       107 ~~~~~~~Gi~~~~~-----~~g~~~~~~~~~~l~~~L~~~l~~~Gv~--i~~~~~V~~i~~~~-~~~~V~~~~g-----~  173 (417)
T 3v76_A          107 VALVERHGIGWHEK-----TLGQLFCDHSAKDIIRMLMAEMKEAGVQ--LRLETSIGEVERTA-SGFRVTTSAG-----T  173 (417)
T ss_dssp             HHHHHHTTCCEEEC-----STTEEEESSCHHHHHHHHHHHHHHHTCE--EECSCCEEEEEEET-TEEEEEETTE-----E
T ss_pred             HHHHHHcCCCcEEe-----eCCEEeeCCCHHHHHHHHHHHHHHCCCE--EEECCEEEEEEEeC-CEEEEEECCc-----E
Confidence            000   01111110     001122  24678999999999999988  99999999998876 6677776432     6


Q ss_pred             EEEcEEEEccCCCCCCcc
Q 013303          153 ETFDAVVVCNGHFSVPRL  170 (446)
Q Consensus       153 ~~~d~VVvAtG~~s~p~~  170 (446)
                      +.+|.||+|||.++.|..
T Consensus       174 i~ad~VIlAtG~~S~p~~  191 (417)
T 3v76_A          174 VDAASLVVASGGKSIPKM  191 (417)
T ss_dssp             EEESEEEECCCCSSCGGG
T ss_pred             EEeeEEEECCCCccCCCC
Confidence            899999999998776543

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=99.36  E-value=2.8e-13  Score=135.97  Aligned_cols=314  Identities=16%  Similarity=0.115  Sum_probs=153.4

Q ss_pred             eEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCC--CCCCCCCCCCCc---cCCcc-------Cceee
Q 013303            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETES--DPLGVDPNRYPV---HSSLY-------KSLRV   71 (446)
Q Consensus         4 ~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~--~~~g~~p~~~~~---~~~~y-------~~l~~   71 (446)
                      ||+|||||++|+++|..|++.|.+|+|+|+. ..||.-......-.  ...++.|...+.   ....+       ..+..
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~-~~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~v~~~~~   79 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR-IDGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNYVTS   79 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSS-TTCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCchHHHHhCCeEEeCCCCCCHHHHHHHHHHhcCCcCCHHHHHHHHH
Confidence            7999999999999999999999999999998 55554221110000  000111100000   00000       00000


Q ss_pred             cCCCCC--cccCCCCCCcCC-CCCCCC-CC----CCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCce-EEE
Q 013303           72 NLPREL--MGFQAYPFVARN-YEGSVD-LR----RYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW-KVK  142 (446)
Q Consensus        72 ~~~~~~--~~~~d~~~~~~~-~~~~~~-~~----~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~-~v~  142 (446)
                      +.+...  +.-...+|.... ...... ..    .-.++.++.+.|.+.+++.+++  +.++++| ++...+ +.. -+.
T Consensus        80 ~~~~~i~~l~~~Gv~~~~~~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~--i~~~~~v-~l~~~~-~~v~Gv~  155 (472)
T 2e5v_A           80 EAKNVIETFESWGFEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAREEGIP--IIEDRLV-EIRVKD-GKVTGFV  155 (472)
T ss_dssp             HHHHHHHHHHHTTCCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHHHTTCC--EECCCEE-EEEEET-TEEEEEE
T ss_pred             HHHHHHHHHHHcCCCCCcccccccCcCcCcEEEeCCCCHHHHHHHHHHHHHhCCCE--EEECcEE-EEEEeC-CEEEEEE
Confidence            000000  000011221100 000000 00    0124568888888888888988  9999999 987654 432 123


Q ss_pred             EEeCCCceEEEEEcEEEEccCCCCCCccCCCC-CCCCCCccEEEee-----ecCCCCCCCCC-EEEEEecCCcHHHHHHH
Q 013303          143 SRKKDDVVEEETFDAVVVCNGHFSVPRLAQVP-GIDSWPGKQMHSH-----NYRIPNPFQDQ-VVILIGHYASGLDIKRD  215 (446)
Q Consensus       143 ~~~~~~~~~~~~~d~VVvAtG~~s~p~~p~i~-G~~~~~g~~~hs~-----~~~~~~~~~~k-~VvVVG~G~sg~eia~~  215 (446)
                      +.+.+   .++.+|.||+|||.  .+.++.++ +.....|..+...     ...+.+.+... +++++|+|  +++++..
T Consensus       156 v~~~~---g~~~a~~VVlAtGg--~~~~~~~~~~~~~~tGdgi~~a~~aGa~~~d~e~~q~~p~~~~~ggg--~~~~ae~  228 (472)
T 2e5v_A          156 TEKRG---LVEDVDKLVLATGG--YSYLYEYSSTQSTNIGDGMAIAFKAGTILADMEFVQFHPTVTSLDGE--VFLLTET  228 (472)
T ss_dssp             ETTTE---EECCCSEEEECCCC--CGGGSSSBSSCTTCSCHHHHHHHHTTCCEECTTCEEEEEEEECGGGC--CEECCTH
T ss_pred             EEeCC---CeEEeeeEEECCCC--CcccCccccCCCCCchHHHHHHHHcCCCEeCCcceEEEeEEEccCCC--ceeeehh
Confidence            32211   24669999999994  44444432 1112223221110     01122211112 34556766  8888888


Q ss_pred             HhccCCEEEEEEecCCccccccCCCCCC-----eeeccceeEEccCCcEEecCC------cEEe-ecEEEEecCccCCCC
Q 013303          216 LAGFAKEVHIASRSVADETHEKQPGYDN-----MWLHSMVERANEDGTVVFRNG------RVVS-ADVIMHCTGYKYNYP  283 (446)
Q Consensus       216 l~~~~~~V~l~~r~~~~~~~~~~~~~~~-----v~~~~~v~~i~~~~~v~~~dG------~~~~-~D~vi~atG~~~~~~  283 (446)
                      +...|..+ +..+...  .+.+......     +....-..++...+.+.+.-.      +.++ +|.++.++|..|+ .
T Consensus       229 ~~~~G~~~-v~~~g~r--f~~~~~~~~el~~rd~v~~~i~~~~~~~~~v~ld~~~~~~~~~~~~~~~~~~~~~G~dp~-~  304 (472)
T 2e5v_A          229 LRGEGAQI-INENGER--FLFNYDKRGELAPRDILSRAIYIEMLKGHKVFIDLSKIEDFERKFPVVAKYLARHGHNYK-V  304 (472)
T ss_dssp             HHHTTCEE-EETTCCC--GGGGTCTTGGGSCHHHHHHHHHHHHHHTCCEEEECTTCTTHHHHCHHHHHHHHHTTCCTT-S
T ss_pred             hcCCceEE-ECCCCCC--CCccCCcccCcCchhHHHHHHHHHHHhCCcEEEeccchHHHHHHhHHHHHHHHHhCcCcc-c
Confidence            88888776 4433332  1211110000     000000011111122322211      1233 5778888999998 5


Q ss_pred             CCC-------CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCc-cC-----chhHHHH----HHHHHHHHHcCC
Q 013303          284 FLE-------TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQK-VI-----PFPFFEL----QSKWIASVLSGR  343 (446)
Q Consensus       284 ~l~-------~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~-~~-----~~~~~~~----qa~~~a~~l~g~  343 (446)
                      .+.       ..|.|.+|.+.+          ++.|+||++|.+.. +.     ....+-.    .++.+++++++.
T Consensus       305 ~i~v~p~~~~~~GGI~vd~~~~----------t~ipgLyAaGd~a~~~~hg~~rl~~~sl~~~~v~G~~a~~~~a~~  371 (472)
T 2e5v_A          305 KIPIFPAAHFVDGGIRVNIRGE----------SNIVNLYAIGEVSDSGLHGANRLASNSLLEGLVFGINLPRYVDSS  371 (472)
T ss_dssp             CEECEEEEEEESCEEECCTTCB----------CSSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHGGGTTTSC
T ss_pred             ceEeehhhceeCCCeEECCCCc----------cccCCEEecchhcccccCCCCCCCcccHHHHHHHHHHHHHHHHhh
Confidence            443       246688888877          56899999998754 21     2233333    456666666553

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=99.35  E-value=4.5e-12  Score=123.91  Aligned_cols=157  Identities=15%  Similarity=0.158  Sum_probs=92.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCC---CCCCCCCCCCCCccCCccCceeecCCCCCc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETE---SDPLGVDPNRYPVHSSLYKSLRVNLPRELM   78 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~---~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~   78 (446)
                      .+||+||||||||+++|..|++.|++|+|||+.+.+|..........   .+..+.......+. ......+...+....
T Consensus         4 ~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~~~   82 (397)
T 3oz2_A            4 TYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIA-NEVKGARIYGPSEKR   82 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEE-EEESEEEEECTTCSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhhhhh-cccceEEEEeCCCce
Confidence            37999999999999999999999999999999877653211100000   00011111000000 011222222222111


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEE
Q 013303           79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV  158 (446)
Q Consensus        79 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~V  158 (446)
                      ... ++....    ........++..+..+|.+.+.+.|..  ++++++|+.+...+ +..........++..++++|.|
T Consensus        83 ~~~-~~~~~~----~~~~~~~i~R~~~~~~L~~~a~~~G~~--~~~~~~v~~~~~~~-~~~~~v~~~~~~~~~~~~a~~v  154 (397)
T 3oz2_A           83 PII-LQSEKA----GNEVGYVLERDKFDKHLAALAAKAGAD--VWVKSPALGVIKEN-GKVAGAKIRHNNEIVDVRAKMV  154 (397)
T ss_dssp             CEE-EECSSS----SCCCEEEECHHHHHHHHHHHHHHHTCE--EESSCCEEEEEEET-TEEEEEEEEETTEEEEEEEEEE
T ss_pred             Eee-cccccc----CCceeEEEEHHHHHHHHHHHHHhcCcE--Eeeeeeeeeeeecc-ceeeeeeecccccceEEEEeEE
Confidence            000 000000    000112347889999999999999988  99999999988766 4444333333445567999999


Q ss_pred             EEccCCCCC
Q 013303          159 VVCNGHFSV  167 (446)
Q Consensus       159 VvAtG~~s~  167 (446)
                      |.|+|.+|.
T Consensus       155 IgAdG~~S~  163 (397)
T 3oz2_A          155 IAADGFESE  163 (397)
T ss_dssp             EECCCTTCH
T ss_pred             EeCCccccH
Confidence            999997654

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.34  E-value=1.4e-12  Score=125.47  Aligned_cols=151  Identities=18%  Similarity=0.286  Sum_probs=86.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHH---CCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCc--cCC-------ccCce
Q 013303            2 FRHVAVIGAGAAGLVVGHELLR---EGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPV--HSS-------LYKSL   69 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~---~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~--~~~-------~y~~l   69 (446)
                      |+||+|||||++|+++|..|++   .|++|+|||+++.+||.+....................  ...       .+..+
T Consensus         1 m~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~   80 (342)
T 3qj4_A            1 MAQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDEL   80 (342)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHHH
T ss_pred             CCcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHHH
Confidence            4799999999999999999999   89999999999999997764311000000000000000  000       00000


Q ss_pred             eecCCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCc
Q 013303           70 RVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV  149 (446)
Q Consensus        70 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~  149 (446)
                      ...  .....+... ....  ........|.....+..+++.++++.+..  |+++++|++|++.+ +.|+|++.++.  
T Consensus        81 ~~~--g~~~~~~~~-~~~~--~~~~~~~~~~~~~g~~~l~~~l~~~~g~~--i~~~~~V~~i~~~~-~~~~v~~~~g~--  150 (342)
T 3qj4_A           81 LAY--GVLRPLSSP-IEGM--VMKEGDCNFVAPQGISSIIKHYLKESGAE--VYFRHRVTQINLRD-DKWEVSKQTGS--  150 (342)
T ss_dssp             HHT--TSCEECCSC-EETC--CC--CCEEEECTTCTTHHHHHHHHHHTCE--EESSCCEEEEEECS-SSEEEEESSSC--
T ss_pred             HhC--CCeecCchh-hcce--eccCCccceecCCCHHHHHHHHHHhcCCE--EEeCCEEEEEEEcC-CEEEEEECCCC--
Confidence            000  000000000 0000  00000112222233455666666666776  99999999999876 78998886653  


Q ss_pred             eEEEEEcEEEEccCC
Q 013303          150 VEEETFDAVVVCNGH  164 (446)
Q Consensus       150 ~~~~~~d~VVvAtG~  164 (446)
                        ++.||.||+|+..
T Consensus       151 --~~~ad~vV~A~p~  163 (342)
T 3qj4_A          151 --PEQFDLIVLTMPV  163 (342)
T ss_dssp             --CEEESEEEECSCH
T ss_pred             --EEEcCEEEECCCH
Confidence              4789999999984

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=99.32  E-value=1.7e-12  Score=128.49  Aligned_cols=155  Identities=18%  Similarity=0.135  Sum_probs=91.9

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc----CceeeeCCCCCCCCCCCCCCCCCccC--CccCceeecCCCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV----GGSWIYTSETESDPLGVDPNRYPVHS--SLYKSLRVNLPRE   76 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~----GG~w~~~~~~~~~~~g~~p~~~~~~~--~~y~~l~~~~~~~   76 (446)
                      +||+|||||++|+++|..|++.|++|+|+|+.+..    |..............|...  .+...  .............
T Consensus         6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~g~~~~~~~~~~l~~~g~~~--~~~~~~~~~~~~~~~~~~~~   83 (421)
T 3nix_A            6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLD--AVKAQGFQQKFGAKFVRGKE   83 (421)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCGGGHHHHHHTTCHH--HHHHTTCEEECEEEEEETTE
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccCcccHhHHHHHHHcCChH--HHHHcCCcccCCcEEEeCCe
Confidence            69999999999999999999999999999997632    2111100000000000000  00000  0000011000000


Q ss_pred             CcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEc
Q 013303           77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD  156 (446)
Q Consensus        77 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d  156 (446)
                      ..   .+++..... ..........+..+.+.|.+.+++.|+.  ++++++|+++...+ +.+.+.+...+++..++.+|
T Consensus        84 ~~---~~~~~~~~~-~~~~~~~~~~r~~~~~~L~~~a~~~gv~--i~~~~~v~~i~~~~-~~~~v~v~~~~g~~~~~~a~  156 (421)
T 3nix_A           84 IA---DFNFSDQFS-NGWNWTWQVPRGNFDKTLADEAARQGVD--VEYEVGVTDIKFFG-TDSVTTIEDINGNKREIEAR  156 (421)
T ss_dssp             EE---EEETTSCSS-CSCCCEEECCHHHHHHHHHHHHHHHTCE--EECSEEEEEEEEET-TEEEEEEEETTSCEEEEEEE
T ss_pred             eE---EEeehhhcC-CCCCceeEECHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEeC-CEEEEEEEcCCCCEEEEEcC
Confidence            00   011111000 0001223367889999999999999988  99999999999876 67777777666655679999


Q ss_pred             EEEEccCCCC
Q 013303          157 AVVVCNGHFS  166 (446)
Q Consensus       157 ~VVvAtG~~s  166 (446)
                      .||+|+|.++
T Consensus       157 ~vV~A~G~~s  166 (421)
T 3nix_A          157 FIIDASGYGR  166 (421)
T ss_dssp             EEEECCGGGC
T ss_pred             EEEECCCCch
Confidence            9999999654

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=99.30  E-value=1.5e-11  Score=124.34  Aligned_cols=152  Identities=25%  Similarity=0.245  Sum_probs=92.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCcee---eeCCCC-C-CCCCCCCCCCCCccCCccCceeecCCCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW---IYTSET-E-SDPLGVDPNRYPVHSSLYKSLRVNLPRE   76 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w---~~~~~~-~-~~~~g~~p~~~~~~~~~y~~l~~~~~~~   76 (446)
                      .+||+||||||+||++|..|++.|++|+|||+.+.++..-   ...+.. . .+..|+           ++.+....+..
T Consensus        11 ~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl-----------~~~~~~~~~~~   79 (500)
T 2qa1_A           11 DAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGI-----------LPRFGEVETST   79 (500)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTC-----------GGGGCSCCBCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCC-----------HHHHHhccccc
Confidence            5799999999999999999999999999999987653210   000000 0 000111           11110000000


Q ss_pred             CcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEc
Q 013303           77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD  156 (446)
Q Consensus        77 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d  156 (446)
                      ...|....+...............+...+.+.|.+.+.+.++.  ++++++|++++.++ +.++|++.++.+ ..++++|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~-~~v~v~~~~~~g-~~~~~a~  155 (500)
T 2qa1_A           80 QGHFGGLPIDFGVLEGAWQAAKTVPQSVTETHLEQWATGLGAD--IRRGHEVLSLTDDG-AGVTVEVRGPEG-KHTLRAA  155 (500)
T ss_dssp             EEEETTEEEEGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCE--EEETCEEEEEEEET-TEEEEEEEETTE-EEEEEES
T ss_pred             cccccceecccccCCCCCCceeecCHHHHHHHHHHHHHHCCCE--EECCcEEEEEEEcC-CeEEEEEEcCCC-CEEEEeC
Confidence            0011110000000000000112345788999999999998887  99999999999876 678888887654 4579999


Q ss_pred             EEEEccCCCCCC
Q 013303          157 AVVVCNGHFSVP  168 (446)
Q Consensus       157 ~VVvAtG~~s~p  168 (446)
                      +||.|+|.+|.-
T Consensus       156 ~vVgADG~~S~V  167 (500)
T 2qa1_A          156 YLVGCDGGRSSV  167 (500)
T ss_dssp             EEEECCCTTCHH
T ss_pred             EEEECCCcchHH
Confidence            999999987643

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=99.30  E-value=4.1e-12  Score=129.84  Aligned_cols=183  Identities=14%  Similarity=0.125  Sum_probs=103.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC-CcCceeeeCCCCCCCCCCCCCCCCCccC-CccCceeecCCC----
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE-QVGGSWIYTSETESDPLGVDPNRYPVHS-SLYKSLRVNLPR----   75 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~-~~GG~w~~~~~~~~~~~g~~p~~~~~~~-~~y~~l~~~~~~----   75 (446)
                      .+||+|||||+||++||..|++.|.+|+|+|+.. .+|.            .+|.|+...... ...+.+.. ...    
T Consensus        28 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~------------~~Cnps~ggia~~~lv~ei~a-lgg~~~~   94 (651)
T 3ces_A           28 PFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQ------------MSCNPAIGGIGKGHLVKEVDA-LGGLMAK   94 (651)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTC------------CSSSSEEESTTHHHHHHHHHH-TTCSHHH
T ss_pred             cCCEEEECChHHHHHHHHHHHhCCCCEEEEeeccccccc------------ccccccccchhhHHHHHHHHH-hccHHHH
Confidence            3699999999999999999999999999999974 3432            123332111000 00000000 000    


Q ss_pred             ----CCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCce
Q 013303           76 ----ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV  150 (446)
Q Consensus        76 ----~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~-~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~  150 (446)
                          ....|........  +..........+..+...+.+.+++ .|+.  + ++++|+.+...++..+.|.+.++    
T Consensus        95 ~~d~~gi~f~~l~~~kg--pav~~~r~~~Dr~~~~~~L~e~Le~~~GV~--I-~~~~V~~L~~e~g~V~GV~t~dG----  165 (651)
T 3ces_A           95 AIDQAGIQFRILNASKG--PAVRATRAQADRVLYRQAVRTALENQPNLM--I-FQQAVEDLIVENDRVVGAVTQMG----  165 (651)
T ss_dssp             HHHHHEEEEEEESTTSC--GGGCEEEEEECHHHHHHHHHHHHHTCTTEE--E-EECCEEEEEESSSBEEEEEETTS----
T ss_pred             HhhhcccchhhhhcccC--cccccchhhCCHHHHHHHHHHHHHhCCCCE--E-EEEEEEEEEecCCEEEEEEECCC----
Confidence                0000000000000  0000001123456788888888887 5776  6 67899999876522245555433    


Q ss_pred             EEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEe
Q 013303          151 EEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR  228 (446)
Q Consensus       151 ~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r  228 (446)
                      .++.+|.||+|||  +.+..+.++|...+.                +.+   +| |.+|.++|..|.+.|.+|+.+..
T Consensus       166 ~~I~Ad~VVLATG--t~s~~~~i~G~~~~~----------------~gr---iG-g~~a~eLA~~L~~lG~~v~~~~t  221 (651)
T 3ces_A          166 LKFRAKAVVLTVG--TFLDGKIHIGLDNYS----------------GGR---AG-DPPSIPLSRRLRELPLRVGRLKT  221 (651)
T ss_dssp             EEEEEEEEEECCS--TTTCCEEECC---------------------------------CCHHHHHHHTTTCCEEEECC
T ss_pred             CEEECCEEEEcCC--CCccCccccCcccCC----------------CCC---cc-chhhhHHHHHHHhcCCeEEEecC
Confidence            3799999999999  555555677765421                223   56 78899999999999999998854

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=99.29  E-value=1.7e-11  Score=123.79  Aligned_cols=154  Identities=22%  Similarity=0.149  Sum_probs=92.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCC-C-CccCCccCceeecCCCCCcc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR-Y-PVHSSLYKSLRVNLPRELMG   79 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~-~-~~~~~~y~~l~~~~~~~~~~   79 (446)
                      .+||+||||||+||++|..|++.|++|+|||+.+.++..-.    .    .+..|.. . +..-.+++.+....+.....
T Consensus        12 ~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r----~----~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~   83 (499)
T 2qa2_A           12 DASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESR----G----LGFTARTMEVFDQRGILPAFGPVETSTQGH   83 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCC----S----EEECHHHHHHHHHTTCGGGGCSCCEESEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCc----e----eEECHHHHHHHHHCCCHHHHHhccccccce
Confidence            57999999999999999999999999999999865532100    0    0000000 0 00000111110000000001


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEE
Q 013303           80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVV  159 (446)
Q Consensus        80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VV  159 (446)
                      +....+...............+...+.+.|.+.+.+.++.  ++++++|++++.++ +.++|++.++.+ ..++++|+||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~-~~v~v~~~~~~g-~~~~~a~~vV  159 (499)
T 2qa2_A           84 FGGRPVDFGVLEGAHYGVKAVPQSTTESVLEEWALGRGAE--LLRGHTVRALTDEG-DHVVVEVEGPDG-PRSLTTRYVV  159 (499)
T ss_dssp             ETTEEEEGGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCE--EEESCEEEEEEECS-SCEEEEEECSSC-EEEEEEEEEE
T ss_pred             ecceecccccCCCCCCceEecCHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEeC-CEEEEEEEcCCC-cEEEEeCEEE
Confidence            1100000000000000112346788999999999998887  99999999999876 678888887655 4679999999


Q ss_pred             EccCCCCC
Q 013303          160 VCNGHFSV  167 (446)
Q Consensus       160 vAtG~~s~  167 (446)
                      .|+|.+|.
T Consensus       160 gADG~~S~  167 (499)
T 2qa2_A          160 GCDGGRST  167 (499)
T ss_dssp             ECCCTTCH
T ss_pred             EccCcccH
Confidence            99998764

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=99.28  E-value=1.6e-11  Score=125.85  Aligned_cols=152  Identities=19%  Similarity=0.116  Sum_probs=90.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCC-CCc-cCCccCceeecCCCCCcc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR-YPV-HSSLYKSLRVNLPRELMG   79 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~-~~~-~~~~y~~l~~~~~~~~~~   79 (446)
                      .+||+|||||++||++|..|++.|++|+|||+.+.++....-        .++.+.. ..+ ...+++.+..........
T Consensus        49 ~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~--------~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~  120 (570)
T 3fmw_A           49 TTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRA--------GALHIRTVETLDLRGLLDRFLEGTQVAKGL  120 (570)
T ss_dssp             --CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSC--------CCBCHHHHHHHHTTTCHHHHTTSCCBCSBC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceE--------EEECHHHHHHHHHcCChHHHHhcCcccCCc
Confidence            469999999999999999999999999999998654311000        0000000 000 000000000000000000


Q ss_pred             -cC-----CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEE
Q 013303           80 -FQ-----AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE  153 (446)
Q Consensus        80 -~~-----d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~  153 (446)
                       |.     .+++...  ..........+...+.+.|.+.+++.|+.  |+++++|++++..+ +.++|++...++. .++
T Consensus       121 ~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~l~~~L~~~a~~~gv~--i~~~~~v~~l~~~~-~~v~v~~~~~~G~-~~~  194 (570)
T 3fmw_A          121 PFAGIFTQGLDFGLV--DTRHPYTGLVPQSRTEALLAEHAREAGAE--IPRGHEVTRLRQDA-EAVEVTVAGPSGP-YPV  194 (570)
T ss_dssp             CBTTBCTTCCBGGGS--CCSCCSBBCCCHHHHHHHHHHHHHHHTEE--CCBSCEEEECCBCS-SCEEEEEEETTEE-EEE
T ss_pred             eeCCccccccccccc--CCCCCeeEEeCHHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcC-CeEEEEEEeCCCc-EEE
Confidence             00     1111100  00001123467889999999999988887  89999999998876 6788888654332 579


Q ss_pred             EEcEEEEccCCCCC
Q 013303          154 TFDAVVVCNGHFSV  167 (446)
Q Consensus       154 ~~d~VVvAtG~~s~  167 (446)
                      .+|+||.|+|.+|.
T Consensus       195 ~a~~vV~ADG~~S~  208 (570)
T 3fmw_A          195 RARYGVGCDGGRST  208 (570)
T ss_dssp             EESEEEECSCSSCH
T ss_pred             EeCEEEEcCCCCch
Confidence            99999999997663

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.28  E-value=3.7e-12  Score=128.64  Aligned_cols=138  Identities=20%  Similarity=0.226  Sum_probs=89.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .+||+|||||++||++|..|++.|++|+|||+.+.+|+.....         +.|       .....+. ..... -...
T Consensus        92 ~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~~~~~---------~~~-------~~~~~l~-~~g~~-~~~~  153 (497)
T 2bry_A           92 NTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHNVLH---------LWP-------FTIHDLR-ALGAK-KFYG  153 (497)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCCCEEE---------CCH-------HHHHHHH-TTTHH-HHCT
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCCCccc---------CCh-------hHHHHHH-HcCCc-cccc
Confidence            4799999999999999999999999999999988776532111         000       0000000 00000 0000


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcC--CCceEEEEEeC-CCceEEEEEcEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE--SNKWKVKSRKK-DDVVEEETFDAV  158 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~--~~~~~v~~~~~-~~~~~~~~~d~V  158 (446)
                      .|...         .....+..++.++|.+.+++.++.  ++++++|+++...+  ++.|.|++.+. +++..++.+|+|
T Consensus       154 ~~~~~---------~~~~~~~~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~V  222 (497)
T 2bry_A          154 RFCTG---------TLDHISIRQLQLLLLKVALLLGVE--IHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVL  222 (497)
T ss_dssp             TTTCT---------TCCEEEHHHHHHHHHHHHHHTTCE--EEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEE
T ss_pred             ccccc---------ccccCCHHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEE
Confidence            11100         111234578999999999998887  99999999998742  24688888543 332235889999


Q ss_pred             EEccCCCCCC
Q 013303          159 VVCNGHFSVP  168 (446)
Q Consensus       159 VvAtG~~s~p  168 (446)
                      |+|+|..+.+
T Consensus       223 V~A~G~~S~~  232 (497)
T 2bry_A          223 ISAAGGKFVP  232 (497)
T ss_dssp             EECCCTTCCC
T ss_pred             EECCCCCccc
Confidence            9999965544

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.27  E-value=1.6e-11  Score=111.16  Aligned_cols=125  Identities=15%  Similarity=0.087  Sum_probs=82.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .+||+|||||++|+++|..|++.|.+|+|||+.....|.+ ..+...    + .     ....+++.           +.
T Consensus         3 ~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~-~~~~~~----~-~-----~~~~~~~~-----------~~   60 (232)
T 2cul_A            3 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMP-FLPPKP----P-F-----PPGSLLER-----------AY   60 (232)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCC-SSCCCS----C-C-----CTTCHHHH-----------HC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcc-cCcccc----c-c-----chhhHHhh-----------hc
Confidence            5799999999999999999999999999999984333322 111000    0 0     00000000           00


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCc-eEEEEEeCCCceEEEEEcEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNK-WKVKSRKKDDVVEEETFDAVV  159 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~~~~~~~~~~~d~VV  159 (446)
                      +    .          .-+.+.++.+++.+.+++. ++.  ++ +++|+++...+ +. +.|.+.++.    ++.+|.||
T Consensus        61 d----~----------~g~~~~~~~~~l~~~~~~~~gv~--i~-~~~v~~i~~~~-~~v~~v~~~~g~----~i~a~~VV  118 (232)
T 2cul_A           61 D----P----------KDERVWAFHARAKYLLEGLRPLH--LF-QATATGLLLEG-NRVVGVRTWEGP----PARGEKVV  118 (232)
T ss_dssp             C----T----------TCCCHHHHHHHHHHHHHTCTTEE--EE-ECCEEEEEEET-TEEEEEEETTSC----CEECSEEE
T ss_pred             c----C----------CCCCHHHHHHHHHHHHHcCCCcE--EE-EeEEEEEEEeC-CEEEEEEECCCC----EEECCEEE
Confidence            0    0          0015678889999999887 776  55 67999998765 43 456554432    68999999


Q ss_pred             EccCCCCCCcc
Q 013303          160 VCNGHFSVPRL  170 (446)
Q Consensus       160 vAtG~~s~p~~  170 (446)
                      +|+|.++....
T Consensus       119 ~A~G~~s~~~~  129 (232)
T 2cul_A          119 LAVGSFLGARL  129 (232)
T ss_dssp             ECCTTCSSCEE
T ss_pred             ECCCCChhhce
Confidence            99997665543

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.24  E-value=7.6e-12  Score=124.80  Aligned_cols=156  Identities=21%  Similarity=0.313  Sum_probs=91.4

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCC-CCCCC---CCccCC--ccCceeecCC
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLG-VDPNR---YPVHSS--LYKSLRVNLP   74 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g-~~p~~---~~~~~~--~y~~l~~~~~   74 (446)
                      |.+||+|||||++|+++|..|++.|.+|+|+|+.+.+|+.............. ..+..   .+....  .+..+....+
T Consensus        25 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (447)
T 2i0z_A           25 MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNN  104 (447)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCH
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhcCH
Confidence            35799999999999999999999999999999998877543221110000000 00000   000000  0000000000


Q ss_pred             CCCccc---CCCCCCcCCCCCCCCCCCCC---CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCc-eEEEEEeCC
Q 013303           75 RELMGF---QAYPFVARNYEGSVDLRRYP---GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRKKD  147 (446)
Q Consensus        75 ~~~~~~---~d~~~~~~~~~~~~~~~~~~---~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~~~  147 (446)
                      ...+.+   ...++...     .....||   ....+.+.|.+.+++.|+.  ++++++|+++...+ +. |.|++.++.
T Consensus       105 ~~~~~~~~~~G~~~~~~-----~~g~~~p~~~~~~~l~~~L~~~~~~~GV~--i~~~~~V~~i~~~~-~~v~~V~~~~G~  176 (447)
T 2i0z_A          105 EDIITFFENLGVKLKEE-----DHGRMFPVSNKAQSVVDALLTRLKDLGVK--IRTNTPVETIEYEN-GQTKAVILQTGE  176 (447)
T ss_dssp             HHHHHHHHHTTCCEEEC-----GGGEEEETTCCHHHHHHHHHHHHHHTTCE--EECSCCEEEEEEET-TEEEEEEETTCC
T ss_pred             HHHHHHHHhcCCceEEe-----eCCEEECCCCCHHHHHHHHHHHHHHCCCE--EEeCcEEEEEEecC-CcEEEEEECCCC
Confidence            000000   01111100     0011222   4688899999999998987  99999999998765 54 777765432


Q ss_pred             CceEEEEEcEEEEccCCCCCC
Q 013303          148 DVVEEETFDAVVVCNGHFSVP  168 (446)
Q Consensus       148 ~~~~~~~~d~VVvAtG~~s~p  168 (446)
                          ++.+|.||+|||.++.|
T Consensus       177 ----~i~Ad~VVlAtGg~s~~  193 (447)
T 2i0z_A          177 ----VLETNHVVIAVGGKSVP  193 (447)
T ss_dssp             ----EEECSCEEECCCCSSSG
T ss_pred             ----EEECCEEEECCCCCcCC
Confidence                68999999999987743

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=99.24  E-value=1e-11  Score=122.32  Aligned_cols=157  Identities=16%  Similarity=0.127  Sum_probs=88.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCc---eeeeCCCCC--CCCCCCCCCCCCccCCccCceeecCCCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG---SWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPRE   76 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG---~w~~~~~~~--~~~~g~~p~~~~~~~~~y~~l~~~~~~~   76 (446)
                      .+||+|||||++||++|..|++.|++|+|||+.+.++.   .+...+...  .+..|..... .........+....+..
T Consensus        23 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~-~~~~~~~~~~~~~~~~~  101 (407)
T 3rp8_A           23 HMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIM-ETFGGPLRRMAYRDFRS  101 (407)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHH-HHHSCCCCEEEEEETTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHH-HhhcCCCcceEEEECCC
Confidence            47999999999999999999999999999999875421   111100000  0000000000 00000011111111110


Q ss_pred             CcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEc
Q 013303           77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFD  156 (446)
Q Consensus        77 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d  156 (446)
                      .-....+++.... ..........++..+.++|.+.+.+  ..  |+++++|++++..+ +.++|++.++.    ++.+|
T Consensus       102 g~~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~L~~~~~~--~~--i~~~~~v~~i~~~~-~~v~v~~~~g~----~~~a~  171 (407)
T 3rp8_A          102 GENMTQFSLAPLI-ERTGSRPCPVSRAELQREMLDYWGR--DS--VQFGKRVTRCEEDA-DGVTVWFTDGS----SASGD  171 (407)
T ss_dssp             CCEEEEEECHHHH-HHHSSCCEEEEHHHHHHHHHHHHCG--GG--EEESCCEEEEEEET-TEEEEEETTSC----EEEES
T ss_pred             CCEeEEecchhhh-hhcCCceEEEEHHHHHHHHHHhCCc--CE--EEECCEEEEEEecC-CcEEEEEcCCC----EEeeC
Confidence            0000001110000 0000122335678889999888876  33  99999999999877 77888876654    79999


Q ss_pred             EEEEccCCCCCCc
Q 013303          157 AVVVCNGHFSVPR  169 (446)
Q Consensus       157 ~VVvAtG~~s~p~  169 (446)
                      .||.|+|.+|.-+
T Consensus       172 ~vV~AdG~~S~vr  184 (407)
T 3rp8_A          172 LLIAADGSHSALR  184 (407)
T ss_dssp             EEEECCCTTCSSH
T ss_pred             EEEECCCcChHHH
Confidence            9999999876543

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.22  E-value=1.8e-11  Score=124.11  Aligned_cols=157  Identities=20%  Similarity=0.245  Sum_probs=87.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcC-------ceeeeCCCCCC--CCCCCCCCCCCccCCccCceeec
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG-------GSWIYTSETES--DPLGVDPNRYPVHSSLYKSLRVN   72 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G-------G~w~~~~~~~~--~~~g~~p~~~~~~~~~y~~l~~~   72 (446)
                      .+||+|||||++|+++|..|++.|++|+|||+.+.++       +.|........  ...+......+.....+..+...
T Consensus       107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~~~  186 (549)
T 3nlc_A          107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP  186 (549)
T ss_dssp             CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSCCT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEeccc
Confidence            4799999999999999999999999999999987763       44543210000  00000000000000000000000


Q ss_pred             --CCCCCc-ccCCCCCCcCCCCCCCCCCC--CCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCC
Q 013303           73 --LPRELM-GFQAYPFVARNYEGSVDLRR--YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD  147 (446)
Q Consensus        73 --~~~~~~-~~~d~~~~~~~~~~~~~~~~--~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~  147 (446)
                        .+...+ .|..+..+....  ....+.  ......+.+.+.+.+++.|++  ++++++|+++...++..+.|++.++.
T Consensus       187 ~~~~~~v~~~~~~~G~~~~i~--~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~--I~~~t~V~~I~~~~~~v~gV~l~~G~  262 (549)
T 3nlc_A          187 NFYGRKVITEFVEAGAPEEIL--YVSKPHIGTFKLVTMIEKMRATIIELGGE--IRFSTRVDDLHMEDGQITGVTLSNGE  262 (549)
T ss_dssp             TCHHHHHHHHHHHTTCCGGGG--TBSSCCCCHHHHHHHHHHHHHHHHHTTCE--EESSCCEEEEEESSSBEEEEEETTSC
T ss_pred             cccHHHHHHHHHHcCCCceEe--eccccccccchHHHHHHHHHHHHHhcCCE--EEeCCEEEEEEEeCCEEEEEEECCCC
Confidence              000000 000111110000  000001  012367888899989988988  99999999998876223557765543


Q ss_pred             CceEEEEEcEEEEccCCCC
Q 013303          148 DVVEEETFDAVVVCNGHFS  166 (446)
Q Consensus       148 ~~~~~~~~d~VVvAtG~~s  166 (446)
                          ++.+|.||+|+|+++
T Consensus       263 ----~i~Ad~VVlA~G~~s  277 (549)
T 3nlc_A          263 ----EIKSRHVVLAVGHSA  277 (549)
T ss_dssp             ----EEECSCEEECCCTTC
T ss_pred             ----EEECCEEEECCCCCh
Confidence                799999999999755

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=99.22  E-value=6.6e-11  Score=120.81  Aligned_cols=159  Identities=19%  Similarity=0.133  Sum_probs=92.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeC---CCCC--CCCCCCCCCCCCc-cCCccC---ce---
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT---SETE--SDPLGVDPNRYPV-HSSLYK---SL---   69 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~---~~~~--~~~~g~~p~~~~~-~~~~y~---~l---   69 (446)
                      .+||+|||||++||++|..|++.|++|+|||+.+.++..-.-.   +...  ....|+..  .+. ....+.   .+   
T Consensus         5 ~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~--~~~~~~~~~~~~~~~~~~   82 (535)
T 3ihg_A            5 EVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVAD--EVVRADDIRGTQGDFVIR   82 (535)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHH--HHHHSCCSSCTTSCCEEE
T ss_pred             cCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHH--HHHhhCCCcccccceeee
Confidence            3699999999999999999999999999999987553110000   0000  00000000  000 000000   00   


Q ss_pred             e-ecC-CCCCccc-CCCCCCc-CCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCC----ceEE
Q 013303           70 R-VNL-PRELMGF-QAYPFVA-RNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN----KWKV  141 (446)
Q Consensus        70 ~-~~~-~~~~~~~-~d~~~~~-~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~----~~~v  141 (446)
                      . ... ......+ ..++... .............++..+..+|.+.+++.|+.  ++++++|++++..+ +    .+++
T Consensus        83 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~--i~~~~~v~~i~~~~-~~~~~~v~v  159 (535)
T 3ihg_A           83 LAESVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHGGA--IRFGTRLLSFRQHD-DDAGAGVTA  159 (535)
T ss_dssp             EESSSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTTCE--EESSCEEEEEEEEC-GGGCSEEEE
T ss_pred             EEeccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCCCE--EEeCCEEEEEEECC-CCccccEEE
Confidence            0 000 0000000 0000000 00000001133467889999999999998887  99999999999876 5    7888


Q ss_pred             EEEeCCCceEEEEEcEEEEccCCCC
Q 013303          142 KSRKKDDVVEEETFDAVVVCNGHFS  166 (446)
Q Consensus       142 ~~~~~~~~~~~~~~d~VVvAtG~~s  166 (446)
                      ++.++.+ ..++.+|+||.|+|.+|
T Consensus       160 ~~~~~~~-~~~i~a~~vV~AdG~~S  183 (535)
T 3ihg_A          160 RLAGPDG-EYDLRAGYLVGADGNRS  183 (535)
T ss_dssp             EEEETTE-EEEEEEEEEEECCCTTC
T ss_pred             EEEcCCC-eEEEEeCEEEECCCCcc
Confidence            8887644 45899999999999766

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.21  E-value=7.6e-11  Score=110.18  Aligned_cols=135  Identities=18%  Similarity=0.129  Sum_probs=82.7

Q ss_pred             CeEEEECcChHHHHHHHHHHHC-CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCC-CCCccc
Q 013303            3 RHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLP-RELMGF   80 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~-g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~-~~~~~~   80 (446)
                      +||+|||||++|+++|..|++. |.+|+|+|+.+.+||.....        +.          .+..+....+ ...+.-
T Consensus        40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~--------~~----------~~~~~~~~~~~~~~l~~  101 (284)
T 1rp0_A           40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLG--------GQ----------LFSAMIVRKPAHLFLDE  101 (284)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCC--------ST----------TCCCEEEETTTHHHHHH
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecC--------Cc----------chHHHHcCcHHHHHHHH
Confidence            5999999999999999999997 99999999998887632211        00          1111111100 000000


Q ss_pred             CCCCCCcCCCCCCCCCCCC--CCHHHHHHHHHHHHHH-hCCCCcEEeCeEEEEEEEcCCCc-eEEEEEe--------C--
Q 013303           81 QAYPFVARNYEGSVDLRRY--PGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNK-WKVKSRK--------K--  146 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~--~~~~~v~~yl~~~~~~-~~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~--------~--  146 (446)
                      .+.++...       ...+  .+..++...+.+.+.+ .++.  ++++++|+++...+ +. ..|.+..        .  
T Consensus       102 ~G~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~gv~--i~~~~~V~~i~~~~-~~v~gv~~~~~~~~~~~~~g~  171 (284)
T 1rp0_A          102 IGVAYDEQ-------DTYVVVKHAALFTSTIMSKLLARPNVK--LFNAVAAEDLIVKG-NRVGGVVTNWALVAQNHHTQS  171 (284)
T ss_dssp             HTCCCEEC-------SSEEEESCHHHHHHHHHHHHHTSTTEE--EEETEEEEEEEEET-TEEEEEEEEEHHHHTCTTTSS
T ss_pred             cCCCcccC-------CCEEEecCHHHHHHHHHHHHHhcCCCE--EEcCcEEEEEEecC-CeEEEEEEeccccccccCccc
Confidence            12222211       0111  1456777777766654 5777  89999999998765 43 2344432        1  


Q ss_pred             CCceEEEEEcEEEEccCCC
Q 013303          147 DDVVEEETFDAVVVCNGHF  165 (446)
Q Consensus       147 ~~~~~~~~~d~VVvAtG~~  165 (446)
                      .++..++.+|.||+|+|+.
T Consensus       172 ~g~~~~i~ad~VV~AtG~~  190 (284)
T 1rp0_A          172 CMDPNVMEAKIVVSSCGHD  190 (284)
T ss_dssp             CCCCEEEEEEEEEECCCSS
T ss_pred             cCceEEEECCEEEECCCCc
Confidence            1233579999999999953

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.20  E-value=5.4e-11  Score=115.52  Aligned_cols=65  Identities=17%  Similarity=0.237  Sum_probs=51.1

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCCCccCC
Q 013303          100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQ  172 (446)
Q Consensus       100 ~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~p~~p~  172 (446)
                      .....+.+.|.+.+++.|+.  ++++++|+++...+ +.|.|++.++     ++.+|.||+|+|.++....+.
T Consensus       146 ~~~~~l~~~l~~~~~~~G~~--i~~~~~V~~i~~~~-~~~~v~~~~g-----~~~a~~vV~a~G~~s~~l~~~  210 (372)
T 2uzz_A          146 LRSELAIKTWIQLAKEAGCA--QLFNCPVTAIRHDD-DGVTIETADG-----EYQAKKAIVCAGTWVKDLLPE  210 (372)
T ss_dssp             EEHHHHHHHHHHHHHHTTCE--EECSCCEEEEEECS-SSEEEEESSC-----EEEEEEEEECCGGGGGGTSTT
T ss_pred             EcHHHHHHHHHHHHHHCCCE--EEcCCEEEEEEEcC-CEEEEEECCC-----eEEcCEEEEcCCccHHhhccc
Confidence            34567888898999998987  99999999999876 5677765432     589999999999877554443

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=99.20  E-value=2.9e-11  Score=122.70  Aligned_cols=155  Identities=20%  Similarity=0.209  Sum_probs=89.8

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCC----cCceeeeCCCC-CCCCCCCCCCCCCcc-CCccCce-eecCCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ----VGGSWIYTSET-ESDPLGVDPNRYPVH-SSLYKSL-RVNLPR   75 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~----~GG~w~~~~~~-~~~~~g~~p~~~~~~-~~~y~~l-~~~~~~   75 (446)
                      +||+|||||++|+++|..|++.|++|+|||+.+.    .|..+...... -....|....  +.. ....... ......
T Consensus         8 ~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~--~~~~~~~~~~~~~~~~~~   85 (512)
T 3e1t_A            8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDE--MKRAGFPIKRGGTFRWGK   85 (512)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHH--HHTTTCCEECEEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHH--HHHcCCccccCceEEecC
Confidence            6999999999999999999999999999999862    22221110000 0000000000  000 0000000 000000


Q ss_pred             C----CcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCce-EEEEEeCCCce
Q 013303           76 E----LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW-KVKSRKKDDVV  150 (446)
Q Consensus        76 ~----~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~-~v~~~~~~~~~  150 (446)
                      .    .+.+...+..      ........++..+.++|.+.+.+.|+.  ++++++|+++...+ +.. .|++...+++.
T Consensus        86 ~~~~~~~~~~~~~~~------~~~~~~~v~r~~l~~~L~~~a~~~Gv~--i~~~~~V~~v~~~~-~~v~gv~~~~~dG~~  156 (512)
T 3e1t_A           86 EPEPWTFGFTRHPDD------PYGFAYQVERARFDDMLLRNSERKGVD--VRERHEVIDVLFEG-ERAVGVRYRNTEGVE  156 (512)
T ss_dssp             CSSCEEEESSSSSSS------TTCCEEBCCHHHHHHHHHHHHHHTTCE--EESSCEEEEEEEET-TEEEEEEEECSSSCE
T ss_pred             CccccccccccCCCC------CcceeeEecHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEEC-CEEEEEEEEeCCCCE
Confidence            0    0011100000      001122367889999999999998887  99999999999865 443 35665544545


Q ss_pred             EEEEEcEEEEccCCCCCC
Q 013303          151 EEETFDAVVVCNGHFSVP  168 (446)
Q Consensus       151 ~~~~~d~VVvAtG~~s~p  168 (446)
                      .++.+|.||+|+|.++.-
T Consensus       157 ~~i~ad~VI~AdG~~S~v  174 (512)
T 3e1t_A          157 LMAHARFIVDASGNRTRV  174 (512)
T ss_dssp             EEEEEEEEEECCCTTCSS
T ss_pred             EEEEcCEEEECCCcchHH
Confidence            689999999999976543

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=99.20  E-value=4.1e-11  Score=117.64  Aligned_cols=142  Identities=19%  Similarity=0.153  Sum_probs=83.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc----CceeeeCCCCC--CCCCCCCCCCCCccCCccCceeecCC-
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV----GGSWIYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLP-   74 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~----GG~w~~~~~~~--~~~~g~~p~~~~~~~~~y~~l~~~~~-   74 (446)
                      .+||+|||||++||++|..|++.|++|+|||+.+..    |+.+...+...  ....|..+ .  ........+....+ 
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~-~--~~~~~~~~~~~~~~~   81 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVEL-D--SISVPSSSMEYVDAL   81 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCG-G--GTCBCCCEEEEEETT
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCcc-c--cccccccceEEEecC
Confidence            479999999999999999999999999999997653    22211110000  00001110 0  00000000000000 


Q ss_pred             -CCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEE
Q 013303           75 -RELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE  153 (446)
Q Consensus        75 -~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~  153 (446)
                       ......  ++.          ...+..+..+.++|.+.+  -++.  ++++++|+++...+ +.|+|++.++.    ++
T Consensus        82 ~g~~~~~--~~~----------~~~~~~~~~l~~~L~~~~--~~~~--i~~~~~v~~i~~~~-~~v~v~~~~g~----~~  140 (397)
T 2vou_A           82 TGERVGS--VPA----------DWRFTSYDSIYGGLYELF--GPER--YHTSKCLVGLSQDS-ETVQMRFSDGT----KA  140 (397)
T ss_dssp             TCCEEEE--EEC----------CCCEEEHHHHHHHHHHHH--CSTT--EETTCCEEEEEECS-SCEEEEETTSC----EE
T ss_pred             CCCcccc--ccC----------cccccCHHHHHHHHHHhC--CCcE--EEcCCEEEEEEecC-CEEEEEECCCC----EE
Confidence             000000  000          112244567777777764  2555  99999999999876 67888876543    68


Q ss_pred             EEcEEEEccCCCCC
Q 013303          154 TFDAVVVCNGHFSV  167 (446)
Q Consensus       154 ~~d~VVvAtG~~s~  167 (446)
                      .+|.||.|+|.+|.
T Consensus       141 ~ad~vV~AdG~~S~  154 (397)
T 2vou_A          141 EANWVIGADGGASV  154 (397)
T ss_dssp             EESEEEECCCTTCH
T ss_pred             ECCEEEECCCcchh
Confidence            99999999998765

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=99.18  E-value=1.1e-10  Score=114.43  Aligned_cols=158  Identities=19%  Similarity=0.222  Sum_probs=89.6

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc------C-ceeeeCCCCCCCCCCCCCCCCCc-cCCccCceeec
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV------G-GSWIYTSETESDPLGVDPNRYPV-HSSLYKSLRVN   72 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~------G-G~w~~~~~~~~~~~g~~p~~~~~-~~~~y~~l~~~   72 (446)
                      |.+||+|||||++|+++|..|++.|++|+|||+.+..      + |........-....|....  +. ....+..+...
T Consensus         1 m~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~--~~~~~~~~~~~~~~   78 (394)
T 1k0i_A            1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRR--MARDGLVHEGVEIA   78 (394)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHH--HHHHCEEESCEEEE
T ss_pred             CCccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHH--HHhcCCccceEEEE
Confidence            5689999999999999999999999999999997642      1 1100000000000010000  00 00000111100


Q ss_pred             CCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEE
Q 013303           73 LPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEE  152 (446)
Q Consensus        73 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~  152 (446)
                      .......   +++...   .........+..++.+.|.+.+.+.++.  ++++++|+++...+++.+.|++.. ++...+
T Consensus        79 ~~~~~~~---~~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~g~~--i~~~~~v~~i~~~~~~~~~v~~~~-~g~~~~  149 (394)
T 1k0i_A           79 FAGQRRR---IDLKRL---SGGKTVTVYGQTEVTRDLMEAREACGAT--TVYQAAEVRLHDLQGERPYVTFER-DGERLR  149 (394)
T ss_dssp             ETTEEEE---ECHHHH---HTSCCEEECCHHHHHHHHHHHHHHTTCE--EESSCEEEEEECTTSSSCEEEEEE-TTEEEE
T ss_pred             ECCceEE---eccccc---cCCCceEEechHHHHHHHHHHHHhcCCe--EEeceeEEEEEEecCCceEEEEec-CCcEEE
Confidence            0000000   011000   0000112235678888888888888877  999999999987643568888733 333346


Q ss_pred             EEEcEEEEccCCCCCCc
Q 013303          153 ETFDAVVVCNGHFSVPR  169 (446)
Q Consensus       153 ~~~d~VVvAtG~~s~p~  169 (446)
                      +.+|.||.|+|.+|..+
T Consensus       150 ~~a~~vV~AdG~~S~vr  166 (394)
T 1k0i_A          150 LDCDYIAGCDGFHGISR  166 (394)
T ss_dssp             EECSEEEECCCTTCSTG
T ss_pred             EEeCEEEECCCCCcHHH
Confidence            89999999999877644

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=99.17  E-value=8.7e-11  Score=115.31  Aligned_cols=146  Identities=21%  Similarity=0.244  Sum_probs=86.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc-----CceeeeCCCCCCCCCCCCCCCCCccCCccCcee------
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV-----GGSWIYTSETESDPLGVDPNRYPVHSSLYKSLR------   70 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~-----GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~------   70 (446)
                      .+||+|||||++|+++|..|++.|++|+|||+.+.+     |+.|...+....        ..+....+++.+.      
T Consensus        26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~--------~~l~~~gl~~~~~~~~~~~   97 (398)
T 2xdo_A           26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQ--------EAMKKAGLLQTYYDLALPM   97 (398)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHH--------HHHHHTTCHHHHHHHCBCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHH--------HHHHhcChHHHHHHhhccc
Confidence            369999999999999999999999999999998654     333432210000        0000000110000      


Q ss_pred             ---ecCCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCC
Q 013303           71 ---VNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD  147 (446)
Q Consensus        71 ---~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~  147 (446)
                         ....... .+.++.++..    ........++..+.++|.+.+..  .  .++++++|++++..+ +.|+|++.++.
T Consensus        98 ~~~~~~~~g~-~~~~~~~~~~----~~~~~~~i~r~~l~~~L~~~~~~--~--~i~~~~~v~~i~~~~-~~v~v~~~~g~  167 (398)
T 2xdo_A           98 GVNIADEKGN-ILSTKNVKPE----NRFDNPEINRNDLRAILLNSLEN--D--TVIWDRKLVMLEPGK-KKWTLTFENKP  167 (398)
T ss_dssp             CEEEECSSSE-EEEECCCGGG----TTSSCCEECHHHHHHHHHHTSCT--T--SEEESCCEEEEEECS-SSEEEEETTSC
T ss_pred             ceEEECCCCC-chhhcccccc----CCCCCceECHHHHHHHHHhhcCC--C--EEEECCEEEEEEECC-CEEEEEECCCc
Confidence               0000000 0000100000    00011234677888888775542  3  389999999999876 67888876653


Q ss_pred             CceEEEEEcEEEEccCCCCCCc
Q 013303          148 DVVEEETFDAVVVCNGHFSVPR  169 (446)
Q Consensus       148 ~~~~~~~~d~VVvAtG~~s~p~  169 (446)
                          ++.+|.||.|+|.+|..+
T Consensus       168 ----~~~ad~vV~AdG~~S~vR  185 (398)
T 2xdo_A          168 ----SETADLVILANGGMSKVR  185 (398)
T ss_dssp             ----CEEESEEEECSCTTCSCC
T ss_pred             ----EEecCEEEECCCcchhHH
Confidence                689999999999876544

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=99.16  E-value=1.6e-10  Score=118.95  Aligned_cols=158  Identities=17%  Similarity=0.210  Sum_probs=90.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHC------CCcEEEEeeCCCcCceeeeCCCCCCCCCC---CCCCC----CCccCCcc-C
Q 013303            2 FRHVAVIGAGAAGLVVGHELLRE------GHTVVVYEKGEQVGGSWIYTSETESDPLG---VDPNR----YPVHSSLY-K   67 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~------g~~v~v~e~~~~~GG~w~~~~~~~~~~~g---~~p~~----~~~~~~~y-~   67 (446)
                      .+||+|||||+|||++|..|++.      |++|+|||+.+.+|+........  .+..   +.+..    ..+..... .
T Consensus        35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l--~~~~l~~ll~~~~~~g~~~~~~~~~~  112 (584)
T 2gmh_A           35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACL--DPRAFEELFPDWKEKGAPLNTPVTED  112 (584)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEE--CTHHHHHHCTTHHHHTCCCCEECCEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCcccccccc--CHHHHHHHHHHHHhcCCceeeeechh
Confidence            36999999999999999999999      99999999988776542111000  0000   00000    00000000 0


Q ss_pred             ceeecCCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceE-EEEEe-
Q 013303           68 SLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSRK-  145 (446)
Q Consensus        68 ~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~-v~~~~-  145 (446)
                      .+..........++..|.. ..   ........++.++.++|.+.+++.|++  |+++++|+++...+++... |.+.+ 
T Consensus       113 ~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~v~r~~l~~~L~~~a~~~Gv~--i~~g~~v~~l~~~~~g~V~gV~~~~~  186 (584)
T 2gmh_A          113 RFGILTEKYRIPVPILPGL-PM---NNHGNYVVRLGHLVSWMGEQAEALGVE--VYPGYAAAEILFHEDGSVKGIATNDV  186 (584)
T ss_dssp             EEEEECSSCEEECCCCTTS-TT---CCTTCEECCHHHHHHHHHHHHHHTTCE--EETTCCEEEEEECTTSSEEEEEECCE
T ss_pred             heeeeccCCCccccccCcc-cc---ccCCCEEEeHHHHHHHHHHHHHHcCCE--EEcCCEEEEEEEcCCCCEEEEEeCCc
Confidence            0000001011111111100 00   001123357889999999999999988  9999999999876534333 65542 


Q ss_pred             ---CCCce-------EEEEEcEEEEccCCCCC
Q 013303          146 ---KDDVV-------EEETFDAVVVCNGHFSV  167 (446)
Q Consensus       146 ---~~~~~-------~~~~~d~VVvAtG~~s~  167 (446)
                         .+++.       .++.+|+||+|+|.++.
T Consensus       187 g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~  218 (584)
T 2gmh_A          187 GIQKDGAPKTTFERGLELHAKVTIFAEGCHGH  218 (584)
T ss_dssp             EECTTSCEEEEEECCCEEECSEEEECCCTTCH
T ss_pred             cccCCCCcccccCCceEEECCEEEEeeCCCch
Confidence               12211       47899999999997654

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.16  E-value=1.5e-10  Score=112.06  Aligned_cols=65  Identities=11%  Similarity=0.107  Sum_probs=51.9

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCCC
Q 013303          100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVP  168 (446)
Q Consensus       100 ~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~p  168 (446)
                      .....+.+.|.+.+++.|+.  ++++++|+++...+++.|.|.+.++  +..++.+|.||+|+|.++..
T Consensus       147 ~~~~~~~~~l~~~~~~~Gv~--i~~~~~v~~i~~~~~~~~~v~~~~g--~~~~~~a~~VV~A~G~~s~~  211 (369)
T 3dme_A          147 VDSHALMLAYQGDAESDGAQ--LVFHTPLIAGRVRPEGGFELDFGGA--EPMTLSCRVLINAAGLHAPG  211 (369)
T ss_dssp             ECHHHHHHHHHHHHHHTTCE--EECSCCEEEEEECTTSSEEEEECTT--SCEEEEEEEEEECCGGGHHH
T ss_pred             ECHHHHHHHHHHHHHHCCCE--EECCCEEEEEEEcCCceEEEEECCC--ceeEEEeCEEEECCCcchHH
Confidence            35678889999999999988  9999999999987634488876543  23479999999999987643

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=99.16  E-value=7.3e-11  Score=115.04  Aligned_cols=145  Identities=21%  Similarity=0.182  Sum_probs=86.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCce---eeeCCCCC--CCCCCCCCCCCCc-cCCccCceeecCCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS---WIYTSETE--SDPLGVDPNRYPV-HSSLYKSLRVNLPR   75 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~---w~~~~~~~--~~~~g~~p~~~~~-~~~~y~~l~~~~~~   75 (446)
                      .+||+|||||++|+++|..|++.|++|+|||+.+.+++.   ....+...  ....|....  +. .......+....+.
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~--~~~~~~~~~~~~~~~~g   88 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDD--VLQGSHTPPTYETWMHN   88 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHH--HHTTCBCCSCEEEEETT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHH--HHhhCCCccceEEEeCC
Confidence            369999999999999999999999999999998766421   10000000  000000000  00 00000001000000


Q ss_pred             CCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEE
Q 013303           76 ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF  155 (446)
Q Consensus        76 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~  155 (446)
                        ..+..++.. .      ......++.++.++|.+.+.+.|+.  ++++++|++++. + +  +|++.++.    ++.+
T Consensus        89 --~~~~~~~~~-~------~~~~~~~r~~l~~~L~~~~~~~gv~--i~~~~~v~~i~~-~-~--~v~~~~g~----~~~a  149 (379)
T 3alj_A           89 --KSVSKETFN-G------LPWRIMTRSHLHDALVNRARALGVD--ISVNSEAVAADP-V-G--RLTLQTGE----VLEA  149 (379)
T ss_dssp             --EEEEEECGG-G------CCEEEEEHHHHHHHHHHHHHHTTCE--EESSCCEEEEET-T-T--EEEETTSC----EEEC
T ss_pred             --ceeeeccCC-C------CceEEECHHHHHHHHHHHHHhcCCE--EEeCCEEEEEEe-C-C--EEEECCCC----EEEc
Confidence              000001110 0      0123456789999999999988887  999999999986 3 4  77765443    6899


Q ss_pred             cEEEEccCCCCC
Q 013303          156 DAVVVCNGHFSV  167 (446)
Q Consensus       156 d~VVvAtG~~s~  167 (446)
                      |.||+|+|.++.
T Consensus       150 d~vV~AdG~~s~  161 (379)
T 3alj_A          150 DLIVGADGVGSK  161 (379)
T ss_dssp             SEEEECCCTTCH
T ss_pred             CEEEECCCccHH
Confidence            999999996553

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.16  E-value=2.5e-10  Score=117.40  Aligned_cols=164  Identities=18%  Similarity=0.163  Sum_probs=92.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCC-------CCCCCCCC-C-----------cc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDP-------LGVDPNRY-P-----------VH   62 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~-------~g~~p~~~-~-----------~~   62 (446)
                      .+||+|||||++||++|..|++.|.+|+|||+.+.+||........-...       .|...+.. +           ..
T Consensus       126 ~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~  205 (571)
T 1y0p_A          126 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNIND  205 (571)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCCCHHHHHhCCCCCHHHHHHHHHHhcCCCCC
Confidence            36999999999999999999999999999999998887654332100000       00000000 0           00


Q ss_pred             CCccCceeecCCCC--CcccCCCCCCcCCCCCCCC-CC------CCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEE
Q 013303           63 SSLYKSLRVNLPRE--LMGFQAYPFVARNYEGSVD-LR------RYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARL  133 (446)
Q Consensus        63 ~~~y~~l~~~~~~~--~~~~~d~~~~~~~~~~~~~-~~------~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~  133 (446)
                      ......+..+.+..  .+.-...+|.......+.. ..      ....+..+.+.|.+.+++.+++  |+++++|+++..
T Consensus       206 ~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv~--i~~~~~v~~l~~  283 (571)
T 1y0p_A          206 PALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNID--LRMNTRGIEVLK  283 (571)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCE--EESSEEEEEEEE
T ss_pred             HHHHHHHHHccHHHHHHHHhcCCCCccCcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHHhcCCE--EEeCCEeeEeEE
Confidence            00000000000000  0000011111000000000 00      1134578999999999999988  999999999987


Q ss_pred             cCCCc-eEEEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303          134 VESNK-WKVKSRKKDDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       134 ~~~~~-~~v~~~~~~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      .+++. +-|.+.+.+++..++.+|.||+|||.++.
T Consensus       284 ~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~~  318 (571)
T 1y0p_A          284 DDKGTVKGILVKGMYKGYYWVKADAVILATGGFAK  318 (571)
T ss_dssp             CTTSCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred             cCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCccc
Confidence            64233 33666553444557899999999997654

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=99.16  E-value=1.1e-10  Score=114.51  Aligned_cols=152  Identities=16%  Similarity=0.111  Sum_probs=87.6

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcC---ceeeeCCCCC--CCCCCCCCCCCCc-cCCccCceeecCCCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG---GSWIYTSETE--SDPLGVDPNRYPV-HSSLYKSLRVNLPRE   76 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G---G~w~~~~~~~--~~~~g~~p~~~~~-~~~~y~~l~~~~~~~   76 (446)
                      +||+|||||++|+++|..|++.|++|+|||+.+.+.   ......+...  ....|....  +. ....+..+....+..
T Consensus         7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~--~~~~~~~~~~~~~~~~~g   84 (399)
T 2x3n_A            7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAE--VTRRGGRVRHELEVYHDG   84 (399)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHH--HHHTTCEEECEEEEEETT
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHH--HHHhCCCcceeEEEeCCC
Confidence            589999999999999999999999999999976541   0000000000  000000000  00 000000000000000


Q ss_pred             CcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCce--EEEEEeCCCceEEE
Q 013303           77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKW--KVKSRKKDDVVEEE  153 (446)
Q Consensus        77 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~--~v~~~~~~~~~~~~  153 (446)
                       .....++....   .........++.++.+.|.+.+++. ++.  ++++++|++++..+ +.+  .|++.++.    ++
T Consensus        85 -~~~~~~~~~~~---~~~~~~~~~~r~~l~~~L~~~~~~~~gv~--i~~~~~v~~i~~~~-~~v~g~v~~~~g~----~~  153 (399)
T 2x3n_A           85 -ELLRYFNYSSV---DARGYFILMPCESLRRLVLEKIDGEATVE--MLFETRIEAVQRDE-RHAIDQVRLNDGR----VL  153 (399)
T ss_dssp             -EEEEEEETTSS---CGGGCEEECCHHHHHHHHHHHHTTCTTEE--EECSCCEEEEEECT-TSCEEEEEETTSC----EE
T ss_pred             -CEEEecchHHh---cccCccccccHHHHHHHHHHHhhhcCCcE--EEcCCEEEEEEEcC-CceEEEEEECCCC----EE
Confidence             00000111100   0000112357789999999999887 777  99999999999876 667  77775543    78


Q ss_pred             EEcEEEEccCCCCC
Q 013303          154 TFDAVVVCNGHFSV  167 (446)
Q Consensus       154 ~~d~VVvAtG~~s~  167 (446)
                      .+|.||+|+|.+|.
T Consensus       154 ~ad~vV~AdG~~s~  167 (399)
T 2x3n_A          154 RPRVVVGADGIASY  167 (399)
T ss_dssp             EEEEEEECCCTTCH
T ss_pred             ECCEEEECCCCChH
Confidence            99999999997664

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=99.15  E-value=3.2e-11  Score=122.84  Aligned_cols=183  Identities=15%  Similarity=0.150  Sum_probs=108.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC-CcCceeeeCCCCCCCCCCCCCCCCCccC-CccCceeecCCC----
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE-QVGGSWIYTSETESDPLGVDPNRYPVHS-SLYKSLRVNLPR----   75 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~-~~GG~w~~~~~~~~~~~g~~p~~~~~~~-~~y~~l~~~~~~----   75 (446)
                      .+||+|||||+||++||..|++.|.+|+|+|+.. .+|+.            +|+|+...... ...+.+.. ...    
T Consensus        27 ~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~------------~Cnps~GGia~g~lv~elda-lgg~~~~   93 (637)
T 2zxi_A           27 EFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQM------------SCNPAIGGIAKGIVVREIDA-LGGEMGK   93 (637)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCC------------CSCSEEECTTHHHHHHHHHH-HTCSHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCc------------CccccccccchHHHHHHHHH-hhhHHHH
Confidence            3699999999999999999999999999999974 44421            23332110000 00000000 000    


Q ss_pred             ----CCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCc-eEEEEEeCCCc
Q 013303           76 ----ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNK-WKVKSRKKDDV  149 (446)
Q Consensus        76 ----~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~~~~~  149 (446)
                          ....|........  +..........+..+.+.+.+.++++ |+.  + ++++|+.+...+ +. +.|.+.++   
T Consensus        94 ~~d~~gi~f~~l~~~kG--pav~~~r~~~Dr~~~~~~L~~~Le~~~GVe--I-~~~~Vt~L~~e~-g~V~GV~t~dG---  164 (637)
T 2zxi_A           94 AIDQTGIQFKMLNTRKG--KAVQSPRAQADKKRYREYMKKVCENQENLY--I-KQEEVVDIIVKN-NQVVGVRTNLG---  164 (637)
T ss_dssp             HHHHHEEEEEEESTTSC--GGGCEEEEEECHHHHHHHHHHHHHTCTTEE--E-EESCEEEEEESS-SBEEEEEETTS---
T ss_pred             HhhhcccceeecccccC--ccccchhhhCCHHHHHHHHHHHHHhCCCCE--E-EEeEEEEEEecC-CEEEEEEECCC---
Confidence                0000000000000  00000011234578888899888874 776  6 678999998765 44 34655444   


Q ss_pred             eEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303          150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS  229 (446)
Q Consensus       150 ~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~  229 (446)
                       .++.+|.||+|||  ..++.+.++|...+.                +.+   + |+.++.++|..|.+.|.+|..+.+.
T Consensus       165 -~~i~AdaVVLATG--~~s~~~~~~G~~~~~----------------~Gr---~-G~~~A~~la~~L~~lG~~v~~l~tg  221 (637)
T 2zxi_A          165 -VEYKTKAVVVTTG--TFLNGVIYIGDKMIP----------------GGR---L-GEPRSEGLSDFYRRFDFPLIRFKTG  221 (637)
T ss_dssp             -CEEECSEEEECCT--TCBTCEEEETTEEEE----------------CSB---T-TBCCBCTHHHHHHHTTCCCEEEEEE
T ss_pred             -cEEEeCEEEEccC--CCccCceeccceecC----------------CCC---C-CchhHHHHHHHHHhcCCceEEecCC
Confidence             2799999999999  555555666654321                122   2 3678899999999999988777653

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.15  E-value=3.1e-10  Score=116.49  Aligned_cols=163  Identities=18%  Similarity=0.220  Sum_probs=91.6

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCC-------CCCCCCCCC-----cc-------C
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDP-------LGVDPNRYP-----VH-------S   63 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~-------~g~~p~~~~-----~~-------~   63 (446)
                      .||+|||||++||++|..|++.|.+|+|||+.+.+||........-...       .|...+...     ..       .
T Consensus       122 ~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~s~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~~~~~  201 (566)
T 1qo8_A          122 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDI  201 (566)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCceeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCCH
Confidence            5899999999999999999999999999999988876533321100000       000000000     00       0


Q ss_pred             CccCceeecCCCC--CcccCCCCCCcCCCCCCCC-------CCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEc
Q 013303           64 SLYKSLRVNLPRE--LMGFQAYPFVARNYEGSVD-------LRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV  134 (446)
Q Consensus        64 ~~y~~l~~~~~~~--~~~~~d~~~~~~~~~~~~~-------~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~  134 (446)
                      ..+..+..+.+..  .+.-...+|.......+..       .....++..+.+.|.+.+++.|+.  |+++++|+++...
T Consensus       202 ~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~~~~~~~~l~~~L~~~~~~~gv~--i~~~~~v~~l~~~  279 (566)
T 1qo8_A          202 KLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGID--TRLNSRVVKLVVN  279 (566)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCC--EECSEEEEEEEEC
T ss_pred             HHHHHHHhccHHHHHHHHhcCCccccccccCCCCCCceeecCCCCCCHHHHHHHHHHHHHhcCCE--EEeCCEEEEEEEC
Confidence            0000000000000  0000011111000000000       011134788999999999999998  9999999999876


Q ss_pred             CCCc-eEEEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303          135 ESNK-WKVKSRKKDDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       135 ~~~~-~~v~~~~~~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      +++. +-|.+.+.+++..++.+|.||+|||.++.
T Consensus       280 ~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~  313 (566)
T 1qo8_A          280 DDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGM  313 (566)
T ss_dssp             TTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTT
T ss_pred             CCCcEEEEEEEeCCCcEEEEEcCEEEEecCCccc
Confidence            4233 34666544444557899999999998764

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=99.14  E-value=1.2e-10  Score=116.42  Aligned_cols=151  Identities=15%  Similarity=0.065  Sum_probs=89.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc--CceeeeCCCCC---CCCCCCCCCCCCccCCccCceeecCCCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV--GGSWIYTSETE---SDPLGVDPNRYPVHSSLYKSLRVNLPRE   76 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~--GG~w~~~~~~~---~~~~g~~p~~~~~~~~~y~~l~~~~~~~   76 (446)
                      .+||+|||||++|+++|..|++.|++|+|||+.+.+  |..+.-. ...   .+..|............+..+....+..
T Consensus         6 ~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~-~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~   84 (453)
T 3atr_A            6 KYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGD-AVSKAHFDKLGMPYPKGEELENKINGIKLYSPDM   84 (453)
T ss_dssp             ECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCC-EEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTTS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccc-cccHHHHHHhcCCCCchHHHHhhhcceEEECCCC
Confidence            369999999999999999999999999999998653  2211100 000   0000100000000000001111111111


Q ss_pred             CcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceE-EEEEeC-CCceEEEE
Q 013303           77 LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSRKK-DDVVEEET  154 (446)
Q Consensus        77 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~-v~~~~~-~~~~~~~~  154 (446)
                      ...   ++++.        .....++..+.+.|.+.+.+.|++  ++++++|+++...+ +... |++.+. +++..++.
T Consensus        85 ~~~---~~~~~--------~~~~i~r~~l~~~L~~~a~~~gv~--i~~~~~v~~i~~~~-~~v~gv~~~~~~~G~~~~~~  150 (453)
T 3atr_A           85 QTV---WTVNG--------EGFELNAPLYNQRVLKEAQDRGVE--IWDLTTAMKPIFED-GYVKGAVLFNRRTNEELTVY  150 (453)
T ss_dssp             SCE---EEEEE--------EEEEECHHHHHHHHHHHHHHTTCE--EESSEEEEEEEEET-TEEEEEEEEETTTTEEEEEE
T ss_pred             ceE---EeECC--------CcEEEcHHHHHHHHHHHHHHcCCE--EEeCcEEEEEEEEC-CEEEEEEEEEcCCCceEEEE
Confidence            000   00000        112346788999999999988887  99999999998765 5444 666543 44445799


Q ss_pred             EcEEEEccCCCCC
Q 013303          155 FDAVVVCNGHFSV  167 (446)
Q Consensus       155 ~d~VVvAtG~~s~  167 (446)
                      +|.||.|+|.++.
T Consensus       151 ad~VV~AdG~~s~  163 (453)
T 3atr_A          151 SKVVVEATGYSRS  163 (453)
T ss_dssp             CSEEEECCGGGCT
T ss_pred             cCEEEECcCCchh
Confidence            9999999997664

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=99.13  E-value=1e-09  Score=112.66  Aligned_cols=149  Identities=23%  Similarity=0.217  Sum_probs=89.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCC-CCc-cCCccCc-----------
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR-YPV-HSSLYKS-----------   68 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~-~~~-~~~~y~~-----------   68 (446)
                      .+||+|||||++|+++|..|++.|++|+|+|+.+..+.....         +..|.. ..+ ...+++.           
T Consensus        23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~~~G~---------~l~p~~~~~l~~lGl~~~l~~~~~~~~~~   93 (591)
T 3i3l_A           23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGE---------SLLPGTMSILNRLGLQEKIDAQNYVKKPS   93 (591)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCCCCC---------BCCHHHHHHHHHTTCHHHHHHHCCEEECE
T ss_pred             CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCCceee---------eECHHHHHHHHHcCCcHHHHhcCCcccCC
Confidence            379999999999999999999999999999997533211000         000000 000 0000000           


Q ss_pred             eeecCC--CC--CcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEE
Q 013303           69 LRVNLP--RE--LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSR  144 (446)
Q Consensus        69 l~~~~~--~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~  144 (446)
                      ......  ..  .+.+.......    ..........+..+.++|.+.+++.|+.  ++++++|+++...+++.+.|++.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~r~~l~~~L~~~a~~~Gv~--i~~g~~V~~v~~~~g~~~~V~~~  167 (591)
T 3i3l_A           94 ATFLWGQDQAPWTFSFAAPKVAP----WVFDHAVQVKREEFDKLLLDEARSRGIT--VHEETPVTDVDLSDPDRVVLTVR  167 (591)
T ss_dssp             EEEECSSSCCCEEEECCCC--CT----TCCSCEEECCHHHHHHHHHHHHHHTTCE--EETTCCEEEEECCSTTCEEEEEE
T ss_pred             cEEEecCCCccceeecccccccc----cccCeeEEEcHHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCCCEEEEEEe
Confidence            000000  00  00110000000    0000122357789999999999998887  99999999998764367888887


Q ss_pred             eCCCceEEEEEcEEEEccCCCC
Q 013303          145 KKDDVVEEETFDAVVVCNGHFS  166 (446)
Q Consensus       145 ~~~~~~~~~~~d~VVvAtG~~s  166 (446)
                      + ++...++.+|.||.|+|.++
T Consensus       168 ~-~G~~~~i~AdlVV~AdG~~S  188 (591)
T 3i3l_A          168 R-GGESVTVESDFVIDAGGSGG  188 (591)
T ss_dssp             E-TTEEEEEEESEEEECCGGGC
T ss_pred             c-CCceEEEEcCEEEECCCCcc
Confidence            5 33345799999999999655

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=99.12  E-value=1.9e-09  Score=110.27  Aligned_cols=156  Identities=12%  Similarity=0.060  Sum_probs=89.0

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee---CCCCC--CCCCCCCCCCCCcc-CCcc----Cceeec
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY---TSETE--SDPLGVDPNRYPVH-SSLY----KSLRVN   72 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~---~~~~~--~~~~g~~p~~~~~~-~~~y----~~l~~~   72 (446)
                      +||+||||||+||++|..|++.|++|+|||+.+.++....-   .+..-  .+..|+...  +.. ....    ......
T Consensus        27 ~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~--~~~~~~~~~~~~~~~~~~  104 (549)
T 2r0c_A           27 TDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQ--IRTAGWPGDHPLDAAWVT  104 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHH--HHTSSCCTTSBCCEEEES
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHH--HHhhcCCcccccceEEec
Confidence            58999999999999999999999999999998765421110   00000  000010000  000 0000    000000


Q ss_pred             CCCCCcccCCCCCCcCCC--C--CCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC-C
Q 013303           73 LPRELMGFQAYPFVARNY--E--GSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-D  147 (446)
Q Consensus        73 ~~~~~~~~~d~~~~~~~~--~--~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~  147 (446)
                      .... ..+..+++.....  .  .........+...+.++|.+.+.+.     ++++++|++++.++ +.+++++.+. +
T Consensus       105 ~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~-----v~~~~~v~~~~~~~-~~v~v~~~~~~~  177 (549)
T 2r0c_A          105 RVGG-HEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER-----LRTRSRLDSFEQRD-DHVRATITDLRT  177 (549)
T ss_dssp             SBTS-CEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG-----EECSEEEEEEEECS-SCEEEEEEETTT
T ss_pred             cCCC-ceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh-----cccCcEEEEEEEeC-CEEEEEEEECCC
Confidence            0000 0000011110000  0  0001123356788888999888775     89999999999876 6788888773 2


Q ss_pred             CceEEEEEcEEEEccCCCCC
Q 013303          148 DVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       148 ~~~~~~~~d~VVvAtG~~s~  167 (446)
                      ++..++.+|+||.|+|.+|.
T Consensus       178 G~~~~i~a~~vVgADG~~S~  197 (549)
T 2r0c_A          178 GATRAVHARYLVACDGASSP  197 (549)
T ss_dssp             CCEEEEEEEEEEECCCTTCH
T ss_pred             CCEEEEEeCEEEECCCCCcH
Confidence            44467999999999998764

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=99.11  E-value=6.6e-10  Score=109.48  Aligned_cols=159  Identities=18%  Similarity=0.135  Sum_probs=89.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCc-EEEEeeCCCcCce---eeeCCCCC--CCCCCCCCCCCCc-cCCccCceeecCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHT-VVVYEKGEQVGGS---WIYTSETE--SDPLGVDPNRYPV-HSSLYKSLRVNLP   74 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~-v~v~e~~~~~GG~---w~~~~~~~--~~~~g~~p~~~~~-~~~~y~~l~~~~~   74 (446)
                      .+||+|||||++||++|..|++.|++ |+|||+.+.++..   ....+...  ....|+...  +. .......+....+
T Consensus         4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~--l~~~~~~~~~~~~~~~   81 (410)
T 3c96_A            4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPA--LAATAIPTHELRYIDQ   81 (410)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHH--HHHHSEEECEEEEECT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHH--HHhhCCCcceEEEEcC
Confidence            46999999999999999999999999 9999998765321   11100000  000000000  00 0000000000000


Q ss_pred             CCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHH-hC-CCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceE
Q 013303           75 RELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FG-VDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVE  151 (446)
Q Consensus        75 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~-~~-l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~  151 (446)
                      .... +...+....  ..........++.++.++|.+.+.+ .+ +.  ++++++|+++.. + +.++|++.+. +++..
T Consensus        82 ~g~~-~~~~~~~~~--~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~--v~~~~~v~~i~~-~-~~v~v~~~~~~~g~~~  154 (410)
T 3c96_A           82 SGAT-VWSEPRGVE--AGNAYPQYSIHRGELQMILLAAVRERLGQQA--VRTGLGVERIEE-R-DGRVLIGARDGHGKPQ  154 (410)
T ss_dssp             TSCE-EEEEECGGG--GTCSSCEEEEEHHHHHHHHHHHHHHHHCTTS--EEESEEEEEEEE-E-TTEEEEEEEETTSCEE
T ss_pred             CCCE-EeeccCCcc--ccCCCCeeeeeHHHHHHHHHHHHHhhCCCcE--EEECCEEEEEec-C-CccEEEEecCCCCCce
Confidence            0000 000000000  0000011235678899999988876 45 35  999999999988 5 6788888762 23335


Q ss_pred             EEEEcEEEEccCCCCCCc
Q 013303          152 EETFDAVVVCNGHFSVPR  169 (446)
Q Consensus       152 ~~~~d~VVvAtG~~s~p~  169 (446)
                      ++.+|.||.|+|.+|..+
T Consensus       155 ~~~ad~vV~AdG~~S~vR  172 (410)
T 3c96_A          155 ALGADVLVGADGIHSAVR  172 (410)
T ss_dssp             EEEESEEEECCCTTCHHH
T ss_pred             EEecCEEEECCCccchhH
Confidence            789999999999877544

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=99.10  E-value=9.6e-11  Score=119.71  Aligned_cols=184  Identities=16%  Similarity=0.161  Sum_probs=104.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC-CcCceeeeCCCCCCCCCCCCCCCCCcc-CCcc------Cceeec-
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE-QVGGSWIYTSETESDPLGVDPNRYPVH-SSLY------KSLRVN-   72 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~-~~GG~w~~~~~~~~~~~g~~p~~~~~~-~~~y------~~l~~~-   72 (446)
                      .+||+|||||+||++||..|++.|.+|+|+|+.. .+|+.+            |.|+..... ..+.      ..+... 
T Consensus        21 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~------------c~ps~gGia~~~lv~el~al~g~~~~~   88 (641)
T 3cp8_A           21 MYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMS------------CNPAIGGVAKGQITREIDALGGEMGKA   88 (641)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCS------------SCSEEECHHHHHHHHHHHHHTCSHHHH
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCc------------cccchhhhhHHHHHHHHHhcccHHHHH
Confidence            4799999999999999999999999999999974 355422            222110000 0000      000000 


Q ss_pred             CCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCceE-EEEEeCCCce
Q 013303           73 LPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNKWK-VKSRKKDDVV  150 (446)
Q Consensus        73 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~~~-v~~~~~~~~~  150 (446)
                      .......|........  +..........+..+.+.+.+.++++ ++.  + ++.+|+.+...+ +... |.+.++    
T Consensus        89 ~d~~gi~f~~l~~~kg--pav~~~r~~~Dr~~l~~~L~~~l~~~~GV~--I-~~~~V~~L~~d~-g~V~GV~t~~G----  158 (641)
T 3cp8_A           89 IDATGIQFRMLNRSKG--PAMHSPRAQADKTQYSLYMRRIVEHEPNID--L-LQDTVIGVSANS-GKFSSVTVRSG----  158 (641)
T ss_dssp             HHHHEEEEEEECSSSC--TTTCEEEEEECHHHHHHHHHHHHHTCTTEE--E-EECCEEEEEEET-TEEEEEEETTS----
T ss_pred             HHhcCCchhhcccccC--ccccchhhhcCHHHHHHHHHHHHHhCCCCE--E-EeeEEEEEEecC-CEEEEEEECCC----
Confidence            0000000000000000  00000011235668888888888875 776  5 567899987655 4443 555443    


Q ss_pred             EEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEe
Q 013303          151 EEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR  228 (446)
Q Consensus       151 ~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r  228 (446)
                      .++.+|.||+|||.+  ++.+.++|...++                +.+++   |+.++++++..|.+.|.+|..+..
T Consensus       159 ~~i~Ad~VVLATG~~--s~~~i~~G~~~~~----------------~g~~v---G~~~a~~la~~L~~~G~kv~~l~t  215 (641)
T 3cp8_A          159 RAIQAKAAILACGTF--LNGLIHIGMDHFP----------------GGRST---AEPPVEGLTESLASLGFSFGRLKT  215 (641)
T ss_dssp             CEEEEEEEEECCTTC--BTCEEEETTEEEE----------------CSSST---TSCCBCSHHHHHHHTTCCEEEEEE
T ss_pred             cEEEeCEEEECcCCC--CCccceeeeeeec----------------ccccc---CCchhhhhHHHHHhCCceEEeecC
Confidence            279999999999954  3333333332210                11221   467888999999999999876644

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.10  E-value=2.8e-10  Score=110.80  Aligned_cols=61  Identities=21%  Similarity=0.151  Sum_probs=49.0

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303           99 YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus        99 ~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      .....++.+.|.+.+++.|+.  ++++++|+++...+ +.|.|++.++     ++.+|.||+|+|.++.
T Consensus       160 ~~~~~~~~~~l~~~~~~~g~~--i~~~~~v~~i~~~~-~~~~v~~~~g-----~~~a~~vV~A~G~~s~  220 (382)
T 1ryi_A          160 HVEPYFVCKAYVKAAKMLGAE--IFEHTPVLHVERDG-EALFIKTPSG-----DVWANHVVVASGVWSG  220 (382)
T ss_dssp             BCCHHHHHHHHHHHHHHTTCE--EETTCCCCEEECSS-SSEEEEETTE-----EEEEEEEEECCGGGTH
T ss_pred             EEcHHHHHHHHHHHHHHCCCE--EEcCCcEEEEEEEC-CEEEEEcCCc-----eEEcCEEEECCChhHH
Confidence            345688999999999999987  99999999998766 6676655321     6899999999997654

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.09  E-value=4.5e-10  Score=117.81  Aligned_cols=61  Identities=20%  Similarity=0.307  Sum_probs=50.6

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303          100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       100 ~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      .....+...|.+.+++.|+.  |+++++|+++...+ +.|.|++.++.    ++.+|.||+|+|.++.
T Consensus       414 v~p~~l~~aL~~~a~~~Gv~--i~~~t~V~~l~~~~-~~v~V~t~~G~----~i~Ad~VVlAtG~~s~  474 (676)
T 3ps9_A          414 LCPAELTRNVLELAQQQGLQ--IYYQYQLQNFSRKD-DCWLLNFAGDQ----QATHSVVVLANGHQIS  474 (676)
T ss_dssp             ECHHHHHHHHHHHHHHTTCE--EEESCCEEEEEEET-TEEEEEETTSC----EEEESEEEECCGGGGG
T ss_pred             eCHHHHHHHHHHHHHhCCCE--EEeCCeeeEEEEeC-CeEEEEECCCC----EEECCEEEECCCcchh
Confidence            35578889999999999987  99999999999877 67877765543    6899999999998754

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=99.08  E-value=4.4e-10  Score=110.41  Aligned_cols=159  Identities=20%  Similarity=0.173  Sum_probs=80.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc-----CceeeeCCCCC--CCCCCCCCCC-CCccCCcc--Cceee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV-----GGSWIYTSETE--SDPLGVDPNR-YPVHSSLY--KSLRV   71 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~-----GG~w~~~~~~~--~~~~g~~p~~-~~~~~~~y--~~l~~   71 (446)
                      ..+|+||||||+||++|..|++.|++|+||||.+.+     |......+...  ....|..... .+.....+  .....
T Consensus         1 sm~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~   80 (412)
T 4hb9_A            1 SMHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLAFEEASRYIGGQSRF   80 (412)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHHHHHHCEEECCCCEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHHhhhhhcccCcceeE
Confidence            368999999999999999999999999999997644     21111100000  0000000000 00000000  00000


Q ss_pred             cCCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceE
Q 013303           72 NLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVE  151 (446)
Q Consensus        72 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~  151 (446)
                      .............................++.++.+.|.+     .+...|+++++|++++..+++..+|++.++.    
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~-----~~~~~v~~~~~v~~~~~~~~~~v~v~~~dG~----  151 (412)
T 4hb9_A           81 YNERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNK-----GLANTIQWNKTFVRYEHIENGGIKIFFADGS----  151 (412)
T ss_dssp             ECTTSCEEEC--------------CEEEEEHHHHHHHHHT-----TCTTTEECSCCEEEEEECTTSCEEEEETTSC----
T ss_pred             ecCCcceecccCCccccccccccccceEeeHHHHHHHHHh-----hccceEEEEEEEEeeeEcCCCeEEEEECCCC----
Confidence            0000000000000000000000000011234555555543     2334599999999998876567888887765    


Q ss_pred             EEEEcEEEEccCCCCCCc
Q 013303          152 EETFDAVVVCNGHFSVPR  169 (446)
Q Consensus       152 ~~~~d~VVvAtG~~s~p~  169 (446)
                      ++++|.||.|.|.+|.-+
T Consensus       152 ~~~adlvVgADG~~S~vR  169 (412)
T 4hb9_A          152 HENVDVLVGADGSNSKVR  169 (412)
T ss_dssp             EEEESEEEECCCTTCHHH
T ss_pred             EEEeeEEEECCCCCcchH
Confidence            789999999999877543

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.04  E-value=6.7e-10  Score=108.20  Aligned_cols=59  Identities=24%  Similarity=0.177  Sum_probs=48.1

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceE-EEEEeCCCceEEEEEcEEEEccCCCC
Q 013303          100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSRKKDDVVEEETFDAVVVCNGHFS  166 (446)
Q Consensus       100 ~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~-v~~~~~~~~~~~~~~d~VVvAtG~~s  166 (446)
                      .....+...|.+.+++.|+.  ++++++|+++...+ +.|. |++.++     ++.+|.||+|+|.++
T Consensus       146 ~~~~~l~~~l~~~~~~~Gv~--i~~~~~v~~i~~~~-~~v~gv~~~~g-----~i~a~~VV~A~G~~s  205 (382)
T 1y56_B          146 ADPFEATTAFAVKAKEYGAK--LLEYTEVKGFLIEN-NEIKGVKTNKG-----IIKTGIVVNATNAWA  205 (382)
T ss_dssp             ECHHHHHHHHHHHHHHTTCE--EECSCCEEEEEESS-SBEEEEEETTE-----EEECSEEEECCGGGH
T ss_pred             ECHHHHHHHHHHHHHHCCCE--EECCceEEEEEEEC-CEEEEEEECCc-----EEECCEEEECcchhH
Confidence            45678888999999999987  99999999999876 6676 665322     689999999999765

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.04  E-value=3.3e-10  Score=110.16  Aligned_cols=60  Identities=17%  Similarity=0.169  Sum_probs=49.4

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303          100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       100 ~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      .....+...|.+.+++.|+.  ++++++|+++...+ +.|.|++.++     ++.+|.||+|+|.++.
T Consensus       151 ~~~~~~~~~l~~~a~~~Gv~--i~~~~~V~~i~~~~-~~~~V~t~~g-----~i~a~~VV~A~G~~s~  210 (381)
T 3nyc_A          151 IDTDALHQGYLRGIRRNQGQ--VLCNHEALEIRRVD-GAWEVRCDAG-----SYRAAVLVNAAGAWCD  210 (381)
T ss_dssp             ECHHHHHHHHHHHHHHTTCE--EESSCCCCEEEEET-TEEEEECSSE-----EEEESEEEECCGGGHH
T ss_pred             ECHHHHHHHHHHHHHHCCCE--EEcCCEEEEEEEeC-CeEEEEeCCC-----EEEcCEEEECCChhHH
Confidence            45678888899999999987  99999999999876 6677766432     6899999999998654

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.03  E-value=7.9e-10  Score=107.89  Aligned_cols=60  Identities=22%  Similarity=0.275  Sum_probs=48.2

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303          100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       100 ~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      .....+...|.+.+++.|+.  ++++++|+++...+ +.|.|++.+     .++.+|.||+|+|.++.
T Consensus       147 ~~~~~~~~~l~~~~~~~Gv~--i~~~~~v~~i~~~~-~~~~v~~~~-----g~~~a~~vV~A~G~~~~  206 (389)
T 2gf3_A          147 LFSENCIRAYRELAEARGAK--VLTHTRVEDFDISP-DSVKIETAN-----GSYTADKLIVSMGAWNS  206 (389)
T ss_dssp             EEHHHHHHHHHHHHHHTTCE--EECSCCEEEEEECS-SCEEEEETT-----EEEEEEEEEECCGGGHH
T ss_pred             EeHHHHHHHHHHHHHHCCCE--EEcCcEEEEEEecC-CeEEEEeCC-----CEEEeCEEEEecCccHH
Confidence            34578888999999999987  99999999999876 567776532     16899999999997654

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.03  E-value=4.1e-10  Score=111.89  Aligned_cols=65  Identities=17%  Similarity=0.124  Sum_probs=51.7

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCcEEeCe---EEEEEEEcCCCceE-EEEEeCCCceEEEEEcEEEEccCCCCCCccC
Q 013303          100 PGHEEVLRYLQNFAREFGVDQVVRLHT---EVLNARLVESNKWK-VKSRKKDDVVEEETFDAVVVCNGHFSVPRLA  171 (446)
Q Consensus       100 ~~~~~v~~yl~~~~~~~~l~~~i~~~~---~V~~v~~~~~~~~~-v~~~~~~~~~~~~~~d~VVvAtG~~s~p~~p  171 (446)
                      .....+...|.+.+++.|+.  +++++   +|++|...+ +.++ |++.++    .++.+|.||+|+|.++....+
T Consensus       158 ~~~~~~~~~L~~~a~~~Gv~--i~~~t~~~~V~~i~~~~-~~v~gV~t~~G----~~i~Ad~VV~AtG~~s~~l~~  226 (438)
T 3dje_A          158 AHARNALVAAAREAQRMGVK--FVTGTPQGRVVTLIFEN-NDVKGAVTADG----KIWRAERTFLCAGASAGQFLD  226 (438)
T ss_dssp             ECHHHHHHHHHHHHHHTTCE--EEESTTTTCEEEEEEET-TEEEEEEETTT----EEEECSEEEECCGGGGGGTSC
T ss_pred             ecHHHHHHHHHHHHHhcCCE--EEeCCcCceEEEEEecC-CeEEEEEECCC----CEEECCEEEECCCCChhhhcC
Confidence            34578889999999999988  99999   999998865 6677 766554    278999999999987654433

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.02  E-value=2.2e-10  Score=113.57  Aligned_cols=42  Identities=31%  Similarity=0.567  Sum_probs=39.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~   43 (446)
                      ++||+|||||++|++||..|++.|++|+|+|+++.+||.+..
T Consensus         1 ~~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t   42 (431)
T 3k7m_X            1 MYDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYS   42 (431)
T ss_dssp             CEEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCE
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCccCeecc
Confidence            479999999999999999999999999999999999997753

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=99.01  E-value=2.2e-09  Score=110.27  Aligned_cols=163  Identities=21%  Similarity=0.197  Sum_probs=91.2

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCC-------CCCCCCCCCCCc-----cCCcc----
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETES-------DPLGVDPNRYPV-----HSSLY----   66 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~-------~~~g~~p~~~~~-----~~~~y----   66 (446)
                      +||+|||||++||++|..|++.|++|+|||+.+.+||........-.       ...|...+....     ....+    
T Consensus       127 ~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~~  206 (572)
T 1d4d_A          127 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNINDP  206 (572)
T ss_dssp             CSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGGGCCSCEECCSSSTTGGGTCCCCTHHHHHHHHHHTTTCSCH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchhhhCCeeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCCH
Confidence            58999999999999999999999999999999988876443211000       000000000000     00000    


Q ss_pred             ---CceeecCCCC--CcccCCCCCCcCCCCCCCC-C------CCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEc
Q 013303           67 ---KSLRVNLPRE--LMGFQAYPFVARNYEGSVD-L------RRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV  134 (446)
Q Consensus        67 ---~~l~~~~~~~--~~~~~d~~~~~~~~~~~~~-~------~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~  134 (446)
                         ..+..+.+..  .+.-...+|.......+.. .      .....+..+.+.|.+.+++.|++  |+++++|+++...
T Consensus       207 ~~v~~~~~~~~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~~~~~g~~l~~~L~~~~~~~gv~--i~~~t~v~~l~~~  284 (572)
T 1d4d_A          207 ELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTD--IRLNSRVVRILED  284 (572)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCE--EESSEEEEEEEEC
T ss_pred             HHHHHHHHccHHHHHHHHhcCCccccccccCCCcCCeeEecCCCCCCHHHHHHHHHHHHHHcCCe--EEecCEEEEEEEC
Confidence               0000000000  0000011111000000000 0      01124678999999999999988  9999999999765


Q ss_pred             C-CCceEEEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303          135 E-SNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       135 ~-~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      + +..+-|.+.+.+++..++.+|.||+|||.++.
T Consensus       285 ~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~~  318 (572)
T 1d4d_A          285 ASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAK  318 (572)
T ss_dssp             --CCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred             CCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCcc
Confidence            4 22344666654454567899999999997654

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=99.01  E-value=2.5e-10  Score=108.18  Aligned_cols=139  Identities=17%  Similarity=0.222  Sum_probs=81.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCCCcCce-eeeCCCCCCCCCCCCCCCCCccCCccCceeecCCC-CC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGS-WIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPR-EL   77 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG~-w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~-~~   77 (446)
                      .+||+|||||++|+++|..|++.  |++|+|+|+...+||. |..         ++          .+.......+. ..
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~---------g~----------~~~~~~~~~~~~~~  139 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLG---------GQ----------LFSAMVMRKPADVF  139 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCC---------BT----------TCCCEEEETTTHHH
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccC---------Cc----------cchhhhcchHHHHH
Confidence            46999999999999999999997  9999999999887753 421         11          11111111000 00


Q ss_pred             cccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCC----------------CceE
Q 013303           78 MGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVES----------------NKWK  140 (446)
Q Consensus        78 ~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~----------------~~~~  140 (446)
                      +.-...++...    + ......+..++.+.|.+.+.+. ++.  ++++++|+.+...++                +..+
T Consensus       140 L~~~Gv~~~~~----G-~~~~~~~~~d~~~~L~~~a~~~~gV~--i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~r  212 (344)
T 3jsk_A          140 LDEVGVPYEDE----G-DYVVVKHAALFTSTVLSKVLQRPNVK--LFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVR  212 (344)
T ss_dssp             HHHHTCCCEEC----S-SEEEESCHHHHHHHHHHHHHTCTTEE--EEETEEEEEEEEEEC----------------CCEE
T ss_pred             HHHcCCccccc----C-CeEEEecHHHHHHHHHHHHHhCCCCE--EEeCCEEEEEEecCCcccccccccccccccCCCce
Confidence            00011122110    0 0011123466777777777763 776  889999999876541                2122


Q ss_pred             E---EEE------eCC----CceEEEEEcEEEEccCCCC
Q 013303          141 V---KSR------KKD----DVVEEETFDAVVVCNGHFS  166 (446)
Q Consensus       141 v---~~~------~~~----~~~~~~~~d~VVvAtG~~s  166 (446)
                      |   .+.      .+.    .+..++.+++||+|||+.+
T Consensus       213 V~GVv~~~~~v~~~g~~~~~~d~~~i~Ak~VV~ATG~~s  251 (344)
T 3jsk_A          213 IAGVVTNWTLVSMHHDDQSAMDPNTINAPVIISTTGHDG  251 (344)
T ss_dssp             EEEEEEEEHHHHTTSSSSSCCBCEEEECSEEEECCCSSS
T ss_pred             EeEEEeeeeeeeccCCcccccCceEEEcCEEEECCCCCc
Confidence            2   221      111    1345799999999999855

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.00  E-value=1.3e-09  Score=111.63  Aligned_cols=65  Identities=12%  Similarity=0.007  Sum_probs=50.8

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEEEEccCCCC
Q 013303          100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFS  166 (446)
Q Consensus       100 ~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~VVvAtG~~s  166 (446)
                      .....+...+...+.+.|+.  ++++++|+++...++..|.|++.+. .++..++.+|.||+|+|.++
T Consensus       167 vd~~~l~~~L~~~a~~~G~~--i~~~~~V~~l~~~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s  232 (561)
T 3da1_A          167 TDDARLTLEIMKEAVARGAV--ALNYMKVESFIYDQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWV  232 (561)
T ss_dssp             CCHHHHHHHHHHHHHHTTCE--EEESEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGH
T ss_pred             EcHHHHHHHHHHHHHHcCCE--EEcCCEEEEEEEcCCeEEEEEEEEcCCCceEEEECCEEEECCCcch
Confidence            34567788888888889988  9999999999987623366888763 23456899999999999865

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.00  E-value=2.1e-09  Score=112.84  Aligned_cols=62  Identities=13%  Similarity=0.298  Sum_probs=50.0

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303          100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       100 ~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      .....+...|.+.+++.|+.  |+++++|+++...+ +.|.|.+.++.   .++.+|.||+|+|.++.
T Consensus       409 v~p~~l~~aL~~~a~~~Gv~--i~~~t~V~~l~~~~-~~v~V~t~~G~---~~i~Ad~VVlAtG~~s~  470 (689)
T 3pvc_A          409 LCPSDLTHALMMLAQQNGMT--CHYQHELQRLKRID-SQWQLTFGQSQ---AAKHHATVILATGHRLP  470 (689)
T ss_dssp             ECHHHHHHHHHHHHHHTTCE--EEESCCEEEEEECS-SSEEEEEC-CC---CCEEESEEEECCGGGTT
T ss_pred             ECHHHHHHHHHHHHHhCCCE--EEeCCeEeEEEEeC-CeEEEEeCCCc---EEEECCEEEECCCcchh
Confidence            35578888899999999987  99999999999877 67888775542   14889999999998754

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.99  E-value=2.7e-09  Score=111.02  Aligned_cols=162  Identities=14%  Similarity=0.072  Sum_probs=91.3

Q ss_pred             CeEEEECcChHHHHHHHHHHH-CCCcEEEEeeCCCcCceee---eCCCCC--CCCCCCCCCCCCc-cCCccCceeecC--
Q 013303            3 RHVAVIGAGAAGLVVGHELLR-EGHTVVVYEKGEQVGGSWI---YTSETE--SDPLGVDPNRYPV-HSSLYKSLRVNL--   73 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~-~g~~v~v~e~~~~~GG~w~---~~~~~~--~~~~g~~p~~~~~-~~~~y~~l~~~~--   73 (446)
                      .||+||||||+||++|..|++ .|++|+|||+.+.++....   ..++.-  .+..|+...  +. .......+....  
T Consensus        33 ~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~--~~~~~~~~~~~~~~~~~  110 (639)
T 2dkh_A           33 VDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADS--ILKEACWINDVTFWKPD  110 (639)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHH--HHHHSEEECEEEEEEEC
T ss_pred             CcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHH--HHHhcccccceEEECCC
Confidence            589999999999999999999 9999999999865432110   000000  000010000  00 000000000000  


Q ss_pred             C---CCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCC---CceEEEEEe--
Q 013303           74 P---RELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES---NKWKVKSRK--  145 (446)
Q Consensus        74 ~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~---~~~~v~~~~--  145 (446)
                      +   ..+.....++....  ..........+...+.++|.+.+.+.+....|+++++|++++.+++   ..++|++.+  
T Consensus       111 ~~~~g~~~~~~~~~~~~~--~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~  188 (639)
T 2dkh_A          111 PGQPGRIARHGRVQDTED--GLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCD  188 (639)
T ss_dssp             TTSTTCEEEEEEEESSCT--TSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECS
T ss_pred             CCCCcceEeecccCcccC--CCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEecc
Confidence            0   00000000110000  0000011235678999999999999876222999999999987652   258888775  


Q ss_pred             --CCCceEEEEEcEEEEccCCCCCC
Q 013303          146 --KDDVVEEETFDAVVVCNGHFSVP  168 (446)
Q Consensus       146 --~~~~~~~~~~d~VVvAtG~~s~p  168 (446)
                        .++...++++|+||.|+|.+|..
T Consensus       189 ~~~~G~~~~i~a~~vVgADG~~S~v  213 (639)
T 2dkh_A          189 AAHAGQIETVQARYVVGCDGARSNV  213 (639)
T ss_dssp             GGGTTCEEEEEEEEEEECCCTTCHH
T ss_pred             ccCCCCeEEEEeCEEEECCCcchHH
Confidence              23445679999999999987653

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=98.97  E-value=1.9e-09  Score=105.62  Aligned_cols=59  Identities=17%  Similarity=0.155  Sum_probs=46.3

Q ss_pred             CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303          101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       101 ~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      ....+...|.+.+++.|+.  ++++++|+++...+ +.|+|.+.+  +   ++.+|.||+|+|.++.
T Consensus       151 ~~~~~~~~l~~~a~~~Gv~--i~~~~~V~~i~~~~-~~v~v~t~~--g---~i~a~~VV~A~G~~s~  209 (397)
T 2oln_A          151 DVRGTLAALFTLAQAAGAT--LRAGETVTELVPDA-DGVSVTTDR--G---TYRAGKVVLACGPYTN  209 (397)
T ss_dssp             EHHHHHHHHHHHHHHTTCE--EEESCCEEEEEEET-TEEEEEESS--C---EEEEEEEEECCGGGHH
T ss_pred             cHHHHHHHHHHHHHHcCCE--EECCCEEEEEEEcC-CeEEEEECC--C---EEEcCEEEEcCCcChH
Confidence            3467778888888888887  99999999998866 667765432  1   6899999999997643

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=98.97  E-value=2e-09  Score=105.67  Aligned_cols=61  Identities=21%  Similarity=0.159  Sum_probs=47.9

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCC
Q 013303           99 YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFS  166 (446)
Q Consensus        99 ~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s  166 (446)
                      ......+.+.|.+.+++.|+.  ++++++|+++...++..|.|++.++     ++.+|.||+|+|.++
T Consensus       170 ~~~~~~~~~~l~~~~~~~g~~--i~~~~~v~~i~~~~~~~~~v~~~~g-----~~~a~~vV~a~G~~s  230 (405)
T 2gag_B          170 IAKHDHVAWAFARKANEMGVD--IIQNCEVTGFIKDGEKVTGVKTTRG-----TIHAGKVALAGAGHS  230 (405)
T ss_dssp             BCCHHHHHHHHHHHHHHTTCE--EECSCCEEEEEESSSBEEEEEETTC-----CEEEEEEEECCGGGH
T ss_pred             cCCHHHHHHHHHHHHHHCCCE--EEcCCeEEEEEEeCCEEEEEEeCCc-----eEECCEEEECCchhH
Confidence            345678889999999998987  9999999999886523366665432     589999999999755

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=98.96  E-value=8.1e-09  Score=104.58  Aligned_cols=60  Identities=15%  Similarity=0.206  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCce-EEEEEeCCCceEEEEEc-EEEEccCCCC
Q 013303          104 EVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW-KVKSRKKDDVVEEETFD-AVVVCNGHFS  166 (446)
Q Consensus       104 ~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~-~v~~~~~~~~~~~~~~d-~VVvAtG~~s  166 (446)
                      .+.+.|.+.+++.|++  |+++++|+++..++++.. -|.+.+ .+...++.+| .||+|||.++
T Consensus       203 ~l~~~L~~~~~~~Gv~--i~~~t~v~~L~~~~~g~v~GV~~~~-~g~~~~i~A~k~VVlAtGG~~  264 (510)
T 4at0_A          203 MLMKPLVETAEKLGVR--AEYDMRVQTLVTDDTGRVVGIVAKQ-YGKEVAVRARRGVVLATGSFA  264 (510)
T ss_dssp             HHHHHHHHHHHHTTCE--EECSEEEEEEEECTTCCEEEEEEEE-TTEEEEEEEEEEEEECCCCCT
T ss_pred             HHHHHHHHHHHHcCCE--EEecCEeEEEEECCCCcEEEEEEEE-CCcEEEEEeCCeEEEeCCChh
Confidence            8889999999999988  999999999988733443 355555 3345578996 9999999876

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=98.95  E-value=4.3e-10  Score=103.60  Aligned_cols=43  Identities=35%  Similarity=0.577  Sum_probs=39.7

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~   43 (446)
                      |..||+|||||||||+||..|++.|++|+|||+.+.+||.+..
T Consensus         1 Mt~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~~~   43 (336)
T 3kkj_A            1 MTVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSS   43 (336)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccc
Confidence            7889999999999999999999999999999999999997653

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.95  E-value=5.5e-09  Score=105.59  Aligned_cols=64  Identities=14%  Similarity=0.109  Sum_probs=51.9

Q ss_pred             CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEEEEccCCCCC
Q 013303          101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       101 ~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      ....+...+.+.+.+.|+.  ++++++|+++...+ +.|.|++.+. +++..++.+|.||+|+|.++.
T Consensus       147 ~~~~l~~~l~~~a~~~Gv~--i~~~~~V~~l~~~~-~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~  211 (501)
T 2qcu_A          147 DDARLVLANAQMVVRKGGE--VLTRTRATSARREN-GLWIVEAEDIDTGKKYSWQARGLVNATGPWVK  211 (501)
T ss_dssp             CHHHHHHHHHHHHHHTTCE--EECSEEEEEEEEET-TEEEEEEEETTTCCEEEEEESCEEECCGGGHH
T ss_pred             cHHHHHHHHHHHHHHcCCE--EEcCcEEEEEEEeC-CEEEEEEEECCCCCEEEEECCEEEECCChhHH
Confidence            4677888888888888987  99999999998876 6788888752 344457999999999998754

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=98.91  E-value=1.3e-08  Score=106.14  Aligned_cols=161  Identities=16%  Similarity=0.112  Sum_probs=90.2

Q ss_pred             CeEEEECcChHHHHHHHHHHH-----CCCcEEEEeeCCCcCce---eeeCCCCC--CCCCCCCCCCCCc-cCCccCceee
Q 013303            3 RHVAVIGAGAAGLVVGHELLR-----EGHTVVVYEKGEQVGGS---WIYTSETE--SDPLGVDPNRYPV-HSSLYKSLRV   71 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~-----~g~~v~v~e~~~~~GG~---w~~~~~~~--~~~~g~~p~~~~~-~~~~y~~l~~   71 (446)
                      +||+||||||+||++|..|++     .|++|+|||+.+.....   ....++.-  .+..|+...  +. ....+..+..
T Consensus         9 ~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~~~~gra~~l~~~tle~l~~lGl~~~--l~~~~~~~~~~~~   86 (665)
T 1pn0_A            9 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLGLADK--ILSEANDMSTIAL   86 (665)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHHHTTTCHHH--HHTTCBCCCEEEE
T ss_pred             CcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCCCCCCceeEEChHHHHHHHHCCCHHH--HHHhccccceEEE
Confidence            589999999999999999999     99999999997543210   00000000  000111000  00 0000111110


Q ss_pred             cCCC---CCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhC---CCCcEEeCeEEEEEEEcC-------CCc
Q 013303           72 NLPR---ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG---VDQVVRLHTEVLNARLVE-------SNK  138 (446)
Q Consensus        72 ~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~---l~~~i~~~~~V~~v~~~~-------~~~  138 (446)
                      ..+.   .+.....++....  ..........+...+.++|.+.+.+++   +.  ++++++|++++.++       +..
T Consensus        87 ~~~~~~g~i~~~~~~~~~~~--~~~~~~~~~l~q~~le~~L~~~~~~~g~~~v~--v~~g~~v~~~~~d~~~~~~~~~~~  162 (665)
T 1pn0_A           87 YNPDENGHIRRTDRIPDTLP--GISRYHQVVLHQGRIERRILDSIAEISDTRIK--VERPLIPEKMEIDSSKAEDPEAYP  162 (665)
T ss_dssp             EEECTTSCEEEEEEEESSCT--TSCSSCCEECCHHHHHHHHHHHHHHHHTTSSC--EECSEEEEEEEECGGGTTCTTCCC
T ss_pred             EeCCCCcceEeecccCcccC--CCCCCeeEEeeHHHHHHHHHHHHHhcCCCceE--EEeCCEEEEEEecCcccccCCCCC
Confidence            0000   0000000100000  000001223577899999999999887   66  99999999998764       135


Q ss_pred             eEEEEEeC----------------------------------------CCceEEEEEcEEEEccCCCCCCc
Q 013303          139 WKVKSRKK----------------------------------------DDVVEEETFDAVVVCNGHFSVPR  169 (446)
Q Consensus       139 ~~v~~~~~----------------------------------------~~~~~~~~~d~VVvAtG~~s~p~  169 (446)
                      .+|++.+.                                        ++...++++|+||.|.|.+|.-+
T Consensus       163 V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~G~~~~i~A~~VVGADG~~S~VR  233 (665)
T 1pn0_A          163 VTMTLRYMSEDESTPLQFGHKTENGLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHSWVR  233 (665)
T ss_dssp             EEEEEEECCGGGSCCCTTCCCCCSSSCCCHHHHHHHHHTSCCCSTTCCTTCEEEEEEEEEEECCCTTCHHH
T ss_pred             EEEEEEecccccccccccccccccccccccccccccccccccccccCCCCceEEEEeCEEEeccCCCCHHH
Confidence            77776652                                        23446799999999999877543

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=98.88  E-value=3.9e-09  Score=105.60  Aligned_cols=42  Identities=29%  Similarity=0.446  Sum_probs=38.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCC------CcEEEEeeCCCcCceeee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREG------HTVVVYEKGEQVGGSWIY   43 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g------~~v~v~e~~~~~GG~w~~   43 (446)
                      ++||+|||||++||+||..|++.|      ++|+|||+++.+||....
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~s   52 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQT   52 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCCE
T ss_pred             CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceEEE
Confidence            479999999999999999999999      999999999999986543

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.87  E-value=2.2e-09  Score=97.01  Aligned_cols=144  Identities=15%  Similarity=0.120  Sum_probs=90.2

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC---------------------------------cccc-ccCCCC-C
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA---------------------------------DETH-EKQPGY-D  242 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~---------------------------------~~~~-~~~~~~-~  242 (446)
                      .+|+|||+|++|+++|..|++.+.+|+++.+...                                 ...+ +.+.+. +
T Consensus         4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~~~~~~g   83 (232)
T 2cul_A            4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRP   83 (232)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTT
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCccccccchhhHHhhhccCCCCCHHHHHHHHHHHHHcCCC
Confidence            3699999999999999999999999999998620                                 0001 111222 2


Q ss_pred             -CeeeccceeEEccC-Cc---EEecCCcEEeecEEEEecCccCCCCCC-----------------------CCCCeeeeC
Q 013303          243 -NMWLHSMVERANED-GT---VVFRNGRVVSADVIMHCTGYKYNYPFL-----------------------ETNGIVTVD  294 (446)
Q Consensus       243 -~v~~~~~v~~i~~~-~~---v~~~dG~~~~~D~vi~atG~~~~~~~l-----------------------~~~g~i~~~  294 (446)
                       .+. ...|.++..+ +.   |.+.+|+++++|.||+|||...+...+                       .+.| +.++
T Consensus        84 v~i~-~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~~~~G~~~~~~g~~g~~~~~~l~~~l~~~g-~~~~  161 (232)
T 2cul_A           84 LHLF-QATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLEDLSRLG-FRFV  161 (232)
T ss_dssp             EEEE-ECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSSCEEEETTEEESEEETTEECCSHHHHHHHHTT-CCEE
T ss_pred             cEEE-EeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChhhceecCCccCCCCCCcccchhhhCHHHHhCC-CeEE
Confidence             233 4577777543 22   667889889999999999995442110                       0011 0000


Q ss_pred             C----------C----------CcccccccccCCCCCCCeEEecCCCccCchhHHHHHHHHHHHHHcCC
Q 013303          295 D----------N----------RVGPLYKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       295 ~----------~----------~~~~l~~~~~~~~~~p~l~~iG~~~~~~~~~~~~~qa~~~a~~l~g~  343 (446)
                      .          .          ...+..+..+..+++|+||++|++.....+..+..|++.+|.++...
T Consensus       162 ~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~t~~p~iya~G~~a~~g~~~~~~~~g~~~a~~i~~~  230 (232)
T 2cul_A          162 EREGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCVREGDYARMSEEGKRLAEHLLHE  230 (232)
T ss_dssp             EEEEEEC-----CCEEEEEEEECGGGEETTTTEETTSBSEEECGGGTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCcCCCCCCccCchhhcccCCCCCccccccccccceeeeecccCccHHHHHHHHHHHHHHHHhh
Confidence            0          0          00001111233246899999998873235667788999999998643

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=98.87  E-value=7.3e-10  Score=108.04  Aligned_cols=134  Identities=22%  Similarity=0.287  Sum_probs=80.2

Q ss_pred             CeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCCCc---CceeeeCCCCCCCCCCCCCCCCCccCCcc-Cc-eeec-CC
Q 013303            3 RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQV---GGSWIYTSETESDPLGVDPNRYPVHSSLY-KS-LRVN-LP   74 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~---GG~w~~~~~~~~~~~g~~p~~~~~~~~~y-~~-l~~~-~~   74 (446)
                      +||+|||||++||++|..|++.  |++|+|||+.+.+   |+.....+.......  .       ...+ +. +... .+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~~~   71 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPA--N-------PLSYLDAPERLNPQF   71 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTT--C-------GGGGSSCGGGGCCEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhc--C-------cchhhhhhHHHhhcc
Confidence            5899999999999999999999  9999999998766   443333221111000  0       0000 00 0000 00


Q ss_pred             CCCcccCC--CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEE
Q 013303           75 RELMGFQA--YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEE  152 (446)
Q Consensus        75 ~~~~~~~d--~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~  152 (446)
                      ...+.+.+  ..+...    ........++.++.+.|.+.+.+.|+.  ++++++|++++..            .    +
T Consensus        72 ~~~~~~~~~g~~~~~~----~~~~~~~~~r~~l~~~L~~~~~~~gv~--i~~~~~v~~i~~~------------~----~  129 (381)
T 3c4a_A           72 LEDFKLVHHNEPSLMS----TGVLLCGVERRGLVHALRDKCRSQGIA--IRFESPLLEHGEL------------P----L  129 (381)
T ss_dssp             ECCEEEEESSSEEECC----CCSCEEEEEHHHHHHHHHHHHHHTTCE--EETTCCCCSGGGC------------C----G
T ss_pred             ccceEEEeCCeeEEec----CCCceeeecHHHHHHHHHHHHHHCCCE--EEeCCEeccchhc------------c----c
Confidence            00011100  000000    000112357789999999999998887  9999999877421            0    2


Q ss_pred             EEEcEEEEccCCCCC
Q 013303          153 ETFDAVVVCNGHFSV  167 (446)
Q Consensus       153 ~~~d~VVvAtG~~s~  167 (446)
                      +.+|.||.|+|.+|.
T Consensus       130 ~~ad~vV~AdG~~S~  144 (381)
T 3c4a_A          130 ADYDLVVLANGVNHK  144 (381)
T ss_dssp             GGCSEEEECCGGGGG
T ss_pred             ccCCEEEECCCCCch
Confidence            469999999998776

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=98.84  E-value=1.2e-08  Score=100.67  Aligned_cols=40  Identities=38%  Similarity=0.629  Sum_probs=37.5

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceee
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI   42 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~   42 (446)
                      +||+|||||++||+||..|++.|++|+|||+++.+||...
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~   40 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFT   40 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCCCCcee
Confidence            5899999999999999999999999999999999998654

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.83  E-value=1.7e-08  Score=95.07  Aligned_cols=137  Identities=16%  Similarity=0.189  Sum_probs=80.5

Q ss_pred             CeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCCCcCc-eeeeCCCCCCCCCCCCCCCCCccCCccCceeecCC-CCCc
Q 013303            3 RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGG-SWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLP-RELM   78 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG-~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~-~~~~   78 (446)
                      +||+|||||++|+++|..|++.  |++|+|||+.+.+|| .|...                   ..+........ ...+
T Consensus        66 ~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g-------------------~~~~~~~~~~~~~~~L  126 (326)
T 2gjc_A           66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGG-------------------QLFSAMVMRKPAHLFL  126 (326)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCG-------------------GGCCCEEEETTTHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccC-------------------cccchhhhhhHHHHHH
Confidence            4899999999999999999998  999999999988874 44311                   01111111100 0000


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcC--C-C--ce-EEEEEe------
Q 013303           79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVE--S-N--KW-KVKSRK------  145 (446)
Q Consensus        79 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~--~-~--~~-~v~~~~------  145 (446)
                      .-...++...     .......+..++...|.+.+... ++.  ++.+++|+.+....  + +  .. -|.+..      
T Consensus       127 ~~~Gv~~~~~-----g~~~~~~~~~~~~~~L~~~a~~~~GV~--i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~  199 (326)
T 2gjc_A          127 QELEIPYEDE-----GDYVVVKHAALFISTVLSKVLQLPNVK--LFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQA  199 (326)
T ss_dssp             HHTTCCCEEC-----SSEEEESCHHHHHHHHHHHHHTSTTEE--EETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC
T ss_pred             HhhCcccccC-----CCeEEEcchHHHHHHHHHHHHHhcCcE--EEecceeeeeeecccccCCCcEEEEEEecceeeccc
Confidence            0011222111     00011114567777777777764 776  88899999997653  1 2  11 122221      


Q ss_pred             C----CCceEEEEE---------------cEEEEccCCC
Q 013303          146 K----DDVVEEETF---------------DAVVVCNGHF  165 (446)
Q Consensus       146 ~----~~~~~~~~~---------------d~VVvAtG~~  165 (446)
                      +    ..+..++.+               +.||.||||.
T Consensus       200 g~~~~~~d~~~I~A~G~~~~~~~~~~~~~~~VV~ATG~~  238 (326)
T 2gjc_A          200 HGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHD  238 (326)
T ss_dssp             ---CCCCCCEEEEESCCCSSSCCCSSTTCCEEEECCCCC
T ss_pred             ccceeccCceEEEEeeccccccccccccCCEEEECcCCC
Confidence            1    012357899               9999999974

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.82  E-value=2.7e-08  Score=99.45  Aligned_cols=106  Identities=26%  Similarity=0.328  Sum_probs=83.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++|+.+.+...                                         
T Consensus       169 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------------  207 (464)
T 2eq6_A          169 PKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQ-----------------------------------------  207 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-----------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccc-----------------------------------------
Confidence            478999999999999999999999999999997543100                                         


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVV  160 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~VVv  160 (446)
                                         ...++.+++.+..++.|++  ++++++|++++..+ +...|++.+. .++..++.+|.||+
T Consensus       208 -------------------~~~~~~~~l~~~l~~~gV~--i~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~i~~D~vv~  265 (464)
T 2eq6_A          208 -------------------GDPETAALLRRALEKEGIR--VRTKTKAVGYEKKK-DGLHVRLEPAEGGEGEEVVVDKVLV  265 (464)
T ss_dssp             -------------------SCHHHHHHHHHHHHHTTCE--EECSEEEEEEEEET-TEEEEEEEETTCCSCEEEEESEEEE
T ss_pred             -------------------cCHHHHHHHHHHHHhcCCE--EEcCCEEEEEEEeC-CEEEEEEeecCCCceeEEEcCEEEE
Confidence                               0157788888888899998  99999999998765 5567776522 13334789999999


Q ss_pred             ccCCCCCCccCC
Q 013303          161 CNGHFSVPRLAQ  172 (446)
Q Consensus       161 AtG~~s~p~~p~  172 (446)
                      |+|  ..|+.+.
T Consensus       266 a~G--~~p~~~~  275 (464)
T 2eq6_A          266 AVG--RKPRTEG  275 (464)
T ss_dssp             CSC--EEESCTT
T ss_pred             CCC--cccCCCC
Confidence            999  6676653

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.82  E-value=3.4e-09  Score=104.18  Aligned_cols=60  Identities=12%  Similarity=0.039  Sum_probs=41.7

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCcEEeCeEEE---------EEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303          100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVL---------NARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       100 ~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~---------~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      .....+...|.+.+++.|+.  +.++++|+         ++...+ +.|.|.+.+     .++.+|.||+|+|.++.
T Consensus       169 v~~~~l~~~L~~~~~~~Gv~--i~~~~~v~~~~g~~~~~~i~~~~-~~v~v~~~~-----g~i~a~~VV~A~G~~s~  237 (405)
T 3c4n_A          169 YRPGSLALLAAQQAIGQGAG--LLLNTRAELVPGGVRLHRLTVTN-THQIVVHET-----RQIRAGVIIVAAGAAGP  237 (405)
T ss_dssp             ECHHHHHHHHHHHHHTTTCE--EECSCEEEEETTEEEEECBCC--------CBCC-----EEEEEEEEEECCGGGHH
T ss_pred             EcHHHHHHHHHHHHHHCCCE--EEcCCEEEeccccccccceEeeC-CeEEEEECC-----cEEECCEEEECCCccHH
Confidence            34577888899988888887  88999999         776554 556554422     16899999999997653

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.80  E-value=4.9e-09  Score=106.28  Aligned_cols=60  Identities=27%  Similarity=0.331  Sum_probs=47.2

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCc--eEEEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303          100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK--WKVKSRKKDDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       100 ~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~--~~v~~~~~~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      .++..+.+.|.+.+.+.|+.  ++++ +|+++...+ +.  +.|++.++.    ++.+|.||.|+|.+|.
T Consensus       170 ~~~~~l~~~L~~~a~~~gv~--~~~~-~v~~i~~~~-~~~~~~v~~~~g~----~~~ad~vV~A~G~~S~  231 (511)
T 2weu_A          170 FDADEVARYLSEYAIARGVR--HVVD-DVQHVGQDE-RGWISGVHTKQHG----EISGDLFVDCTGFRGL  231 (511)
T ss_dssp             ECHHHHHHHHHHHHHHTTCE--EEEC-CEEEEEECT-TSCEEEEEESSSC----EEECSEEEECCGGGCC
T ss_pred             EcHHHHHHHHHHHHHHCCCE--EEEC-eEeEEEEcC-CCCEEEEEECCCC----EEEcCEEEECCCcchH
Confidence            57789999999999998887  8889 999998755 34  445554432    6899999999997654

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.80  E-value=3.8e-08  Score=101.45  Aligned_cols=65  Identities=11%  Similarity=0.106  Sum_probs=48.7

Q ss_pred             CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCc-eEEEEEe-CCCceEEEEEcEEEEccCCCCCC
Q 013303          101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRK-KDDVVEEETFDAVVVCNGHFSVP  168 (446)
Q Consensus       101 ~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~-~~~~~~~~~~d~VVvAtG~~s~p  168 (446)
                      ++..+...|.+.+.+.++.  +++++.|+++...+ +. .-|.+.+ .+++...+.++.||+|||.++..
T Consensus       153 tG~~l~~~L~~~~~~~gv~--i~~~~~v~~Li~~~-g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~~  219 (621)
T 2h88_A          153 TGHSLLHTLYGRSLRYDTS--YFVEYFALDLLMEN-GECRGVIALCIEDGTIHRFRAKNTVIATGGYGRT  219 (621)
T ss_dssp             HHHHHHHHHHHHHTTSCCE--EEETEEEEEEEEET-TEEEEEEEEETTTCCEEEEEEEEEEECCCCCGGG
T ss_pred             CHHHHHHHHHHHHHhCCCE--EEEceEEEEEEEEC-CEEEEEEEEEcCCCcEEEEEcCeEEECCCccccc
Confidence            3568888888888888887  99999999998654 43 3355544 34455678999999999987653

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.80  E-value=2.2e-08  Score=99.93  Aligned_cols=102  Identities=25%  Similarity=0.264  Sum_probs=80.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||++|+.+|..|++.|.+|+++|+.+.+.                                           
T Consensus       167 ~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l-------------------------------------------  203 (455)
T 2yqu_A          167 PKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRIL-------------------------------------------  203 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC-------------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccc-------------------------------------------
Confidence            4789999999999999999999999999999875330                                           


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                        |.               ...++.+.+.+.+++.|++  ++++++|++++..+ +.+.+++.++    .++.+|.||+|
T Consensus       204 --~~---------------~~~~~~~~l~~~l~~~Gv~--i~~~~~V~~i~~~~-~~v~v~~~~g----~~i~~D~vv~A  259 (455)
T 2yqu_A          204 --PT---------------MDLEVSRAAERVFKKQGLT--IRTGVRVTAVVPEA-KGARVELEGG----EVLEADRVLVA  259 (455)
T ss_dssp             --TT---------------SCHHHHHHHHHHHHHHTCE--EECSCCEEEEEEET-TEEEEEETTS----CEEEESEEEEC
T ss_pred             --cc---------------cCHHHHHHHHHHHHHCCCE--EEECCEEEEEEEeC-CEEEEEECCC----eEEEcCEEEEC
Confidence              00               0146778888888888988  99999999998765 5566655433    27899999999


Q ss_pred             cCCCCCCccCC
Q 013303          162 NGHFSVPRLAQ  172 (446)
Q Consensus       162 tG~~s~p~~p~  172 (446)
                      +|  ..|+.+.
T Consensus       260 ~G--~~p~~~~  268 (455)
T 2yqu_A          260 VG--RRPYTEG  268 (455)
T ss_dssp             SC--EEECCTT
T ss_pred             cC--CCcCCCC
Confidence            99  6666543

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.79  E-value=6.9e-09  Score=105.88  Aligned_cols=61  Identities=21%  Similarity=0.299  Sum_probs=46.6

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCc-eEEEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303          100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRKKDDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       100 ~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~~~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      .++.++.++|.+.+++.|+.  ++++ +|+++...+++. +.|++.++    .++.+|.||+|+|.++.
T Consensus       162 i~~~~l~~~L~~~a~~~gv~--~~~~-~v~~i~~~~~g~~~~v~~~~g----~~i~ad~vV~A~G~~s~  223 (538)
T 2aqj_A          162 FDAHLVADFLKRWAVERGVN--RVVD-EVVDVRLNNRGYISNLLTKEG----RTLEADLFIDCSGMRGL  223 (538)
T ss_dssp             ECHHHHHHHHHHHHHHTTCE--EEEC-CEEEEEECTTSCEEEEEETTS----CEECCSEEEECCGGGCC
T ss_pred             EeHHHHHHHHHHHHHHCCCE--EEEe-eEeEEEEcCCCcEEEEEECCC----cEEEeCEEEECCCCchh
Confidence            46689999999999998887  8888 899998765232 45555433    26899999999997654

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.78  E-value=1e-08  Score=105.40  Aligned_cols=64  Identities=11%  Similarity=-0.074  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCc-eEEEEEe-CCCceEEEEEcEEEEccCCCCC
Q 013303          102 HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRK-KDDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       102 ~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~-~~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      +..+.+.|.+.+.+.|+.  |++++.|+++..++++. +-|.+.+ .+++...+.++.||+|||.++.
T Consensus       142 g~~l~~~L~~~~~~~gv~--i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~~  207 (588)
T 2wdq_A          142 GHALLHTLYQQNLKNHTT--IFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGR  207 (588)
T ss_dssp             HHHHHHHHHHHHHHTTCE--EEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCCGG
T ss_pred             HHHHHHHHHHHHHhCCCE--EEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCCcc
Confidence            478888899999888887  99999999998752243 3455554 3345567899999999998664

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.78  E-value=2.6e-08  Score=97.06  Aligned_cols=101  Identities=23%  Similarity=0.223  Sum_probs=80.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++|+.+.+...                                         
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-----------------------------------------  183 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPG-----------------------------------------  183 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-----------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhc-----------------------------------------
Confidence            478999999999999999999999999999986532100                                         


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                       + ...++.+.+.+..++.|+.  ++++++|.+++..+ +.+.|++.++.    ++.+|.||+|
T Consensus       184 -----------------~-~~~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~-~~~~v~~~~g~----~i~~d~vv~a  238 (384)
T 2v3a_A          184 -----------------L-LHPAAAKAVQAGLEGLGVR--FHLGPVLASLKKAG-EGLEAHLSDGE----VIPCDLVVSA  238 (384)
T ss_dssp             -----------------T-SCHHHHHHHHHHHHTTTCE--EEESCCEEEEEEET-TEEEEEETTSC----EEEESEEEEC
T ss_pred             -----------------c-cCHHHHHHHHHHHHHcCCE--EEeCCEEEEEEecC-CEEEEEECCCC----EEECCEEEEC
Confidence                             0 0156778888888888988  99999999998765 55667665442    7899999999


Q ss_pred             cCCCCCCcc
Q 013303          162 NGHFSVPRL  170 (446)
Q Consensus       162 tG~~s~p~~  170 (446)
                      +|  ..|+.
T Consensus       239 ~G--~~p~~  245 (384)
T 2v3a_A          239 VG--LRPRT  245 (384)
T ss_dssp             SC--EEECC
T ss_pred             cC--CCcCH
Confidence            99  55554

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=98.77  E-value=2.4e-08  Score=102.33  Aligned_cols=65  Identities=17%  Similarity=0.046  Sum_probs=48.0

Q ss_pred             CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEEEEccCCCCC
Q 013303          101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       101 ~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      ....+...+...+.+.|+.  +.++++|+++...++..|.|++.+. +++..++.+|.||+|+|.++.
T Consensus       186 ~~~~l~~~l~~~a~~~Ga~--i~~~t~V~~l~~~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws~  251 (571)
T 2rgh_A          186 NDARLVIDNIKKAAEDGAY--LVSKMKAVGFLYEGDQIVGVKARDLLTDEVIEIKAKLVINTSGPWVD  251 (571)
T ss_dssp             CHHHHHHHHHHHHHHTTCE--EESSEEEEEEEEETTEEEEEEEEETTTCCEEEEEBSCEEECCGGGHH
T ss_pred             chHHHHHHHHHHHHHcCCe--EEeccEEEEEEEeCCEEEEEEEEEcCCCCEEEEEcCEEEECCChhHH
Confidence            3455666667778888987  9999999999887623366777653 233447999999999998653

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.76  E-value=7.8e-08  Score=95.92  Aligned_cols=105  Identities=19%  Similarity=0.231  Sum_probs=82.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++|+.+.+..                                          
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------  207 (455)
T 1ebd_A          170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS------------------------------------------  207 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST------------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc------------------------------------------
Confidence            47899999999999999999999999999999754310                                          


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                      .  ...++.+++.+..++.|+.  ++++++|.+++..+ +...+++.. .++..++.+|.||+|
T Consensus       208 ----------------~--~~~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~-~~~~v~~~~-~g~~~~~~~D~vv~a  265 (455)
T 1ebd_A          208 ----------------G--FEKQMAAIIKKRLKKKGVE--VVTNALAKGAEERE-DGVTVTYEA-NGETKTIDADYVLVT  265 (455)
T ss_dssp             ----------------T--SCHHHHHHHHHHHHHTTCE--EEESEEEEEEEEET-TEEEEEEEE-TTEEEEEEESEEEEC
T ss_pred             ----------------c--cCHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEeC-CeEEEEEEe-CCceeEEEcCEEEEC
Confidence                            0  0156778888888899998  99999999998765 456666653 222357899999999


Q ss_pred             cCCCCCCccCC
Q 013303          162 NGHFSVPRLAQ  172 (446)
Q Consensus       162 tG~~s~p~~p~  172 (446)
                      +|  ..|+.+.
T Consensus       266 ~G--~~p~~~~  274 (455)
T 1ebd_A          266 VG--RRPNTDE  274 (455)
T ss_dssp             SC--EEESCSS
T ss_pred             cC--CCcccCc
Confidence            99  6676543

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.76  E-value=3.9e-08  Score=97.96  Aligned_cols=102  Identities=17%  Similarity=0.164  Sum_probs=81.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++|+.+.+..                                          
T Consensus       167 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------  204 (450)
T 1ges_A          167 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP------------------------------------------  204 (450)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST------------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhh------------------------------------------
Confidence            47899999999999999999999999999998754310                                          


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                      .+  ..++.+.+.+.+++.|++  ++++++|.+++..+++...|++.++.    ++.+|.||+|
T Consensus       205 ----------------~~--~~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~~~~~v~~~~g~----~i~~D~vv~a  260 (450)
T 1ges_A          205 ----------------SF--DPMISETLVEVMNAEGPQ--LHTNAIPKAVVKNTDGSLTLELEDGR----SETVDCLIWA  260 (450)
T ss_dssp             ----------------TS--CHHHHHHHHHHHHHHSCE--EECSCCEEEEEECTTSCEEEEETTSC----EEEESEEEEC
T ss_pred             ----------------hh--hHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEeCCcEEEEEECCCc----EEEcCEEEEC
Confidence                            00  146778888888888998  99999999998765234677665443    7899999999


Q ss_pred             cCCCCCCccC
Q 013303          162 NGHFSVPRLA  171 (446)
Q Consensus       162 tG~~s~p~~p  171 (446)
                      +|  ..|+..
T Consensus       261 ~G--~~p~~~  268 (450)
T 1ges_A          261 IG--REPAND  268 (450)
T ss_dssp             SC--EEESCT
T ss_pred             CC--CCcCCC
Confidence            99  667664

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=98.74  E-value=2e-08  Score=107.81  Aligned_cols=59  Identities=20%  Similarity=0.237  Sum_probs=46.7

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCce-EEEEEeCCCceEEEEEcEEEEccCCCC
Q 013303          100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW-KVKSRKKDDVVEEETFDAVVVCNGHFS  166 (446)
Q Consensus       100 ~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~-~v~~~~~~~~~~~~~~d~VVvAtG~~s  166 (446)
                      .....+...|.+.+++.|+.  ++++++|++|...+ +.+ .|.+.++     ++.+|.||+|+|.++
T Consensus       148 v~p~~l~~~L~~~a~~~Gv~--i~~~t~V~~i~~~~-~~v~~V~t~~G-----~i~Ad~VV~AaG~~s  207 (830)
T 1pj5_A          148 ASAARAVQLLIKRTESAGVT--YRGSTTVTGIEQSG-GRVTGVQTADG-----VIPADIVVSCAGFWG  207 (830)
T ss_dssp             ECHHHHHHHHHHHHHHTTCE--EECSCCEEEEEEET-TEEEEEEETTE-----EEECSEEEECCGGGH
T ss_pred             EcHHHHHHHHHHHHHHcCCE--EECCceEEEEEEeC-CEEEEEEECCc-----EEECCEEEECCccch
Confidence            35678889999999999987  99999999998765 443 4554322     689999999999865

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.74  E-value=7.4e-08  Score=96.70  Aligned_cols=105  Identities=29%  Similarity=0.419  Sum_probs=82.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++|+.+.+...+                                        
T Consensus       183 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~----------------------------------------  222 (478)
T 1v59_A          183 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASM----------------------------------------  222 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSS----------------------------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcccccc----------------------------------------
Confidence            4789999999999999999999999999999976431100                                        


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEE--cCCCceEEEEEeC-CCceEEEEEcEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARL--VESNKWKVKSRKK-DDVVEEETFDAV  158 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~--~~~~~~~v~~~~~-~~~~~~~~~d~V  158 (446)
                                          ..++.+++.+..++.|++  ++++++|.+++.  .+ +.+.|++.+. .++..++.+|.|
T Consensus       223 --------------------~~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~~~-~~~~v~~~~~~~g~~~~~~~D~v  279 (478)
T 1v59_A          223 --------------------DGEVAKATQKFLKKQGLD--FKLSTKVISAKRNDDK-NVVEIVVEDTKTNKQENLEAEVL  279 (478)
T ss_dssp             --------------------CHHHHHHHHHHHHHTTCE--EECSEEEEEEEEETTT-TEEEEEEEETTTTEEEEEEESEE
T ss_pred             --------------------CHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEecCC-CeEEEEEEEcCCCCceEEECCEE
Confidence                                157788888889999998  999999999987  33 4566776531 122357899999


Q ss_pred             EEccCCCCCCccC
Q 013303          159 VVCNGHFSVPRLA  171 (446)
Q Consensus       159 VvAtG~~s~p~~p  171 (446)
                      |+|+|  ..|+..
T Consensus       280 v~a~G--~~p~~~  290 (478)
T 1v59_A          280 LVAVG--RRPYIA  290 (478)
T ss_dssp             EECSC--EEECCT
T ss_pred             EECCC--CCcCCC
Confidence            99999  667654

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.71  E-value=3.8e-08  Score=97.97  Aligned_cols=104  Identities=22%  Similarity=0.201  Sum_probs=79.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||++|+.+|..|++.|.+|+++|+.+.+...                                         
T Consensus       149 ~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------------  187 (447)
T 1nhp_A          149 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV-----------------------------------------  187 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT-----------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccc-----------------------------------------
Confidence            478999999999999999999999999999997533110                                         


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                      .  ...++.+++.+.+++.|++  ++++++|.+++..+ ..+.+.+ ++    .++.+|.||+|
T Consensus       188 ----------------~--~~~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~-~v~~v~~-~~----~~i~~d~vi~a  241 (447)
T 1nhp_A          188 ----------------Y--LDKEFTDVLTEEMEANNIT--IATGETVERYEGDG-RVQKVVT-DK----NAYDADLVVVA  241 (447)
T ss_dssp             ----------------T--CCHHHHHHHHHHHHTTTEE--EEESCCEEEEECSS-BCCEEEE-SS----CEEECSEEEEC
T ss_pred             ----------------c--CCHHHHHHHHHHHHhCCCE--EEcCCEEEEEEccC-cEEEEEE-CC----CEEECCEEEEC
Confidence                            0  0156788888888888988  99999999998642 3344554 22    26899999999


Q ss_pred             cCCCCCCccCCCC
Q 013303          162 NGHFSVPRLAQVP  174 (446)
Q Consensus       162 tG~~s~p~~p~i~  174 (446)
                      +|  ..|+.+.++
T Consensus       242 ~G--~~p~~~~~~  252 (447)
T 1nhp_A          242 VG--VRPNTAWLK  252 (447)
T ss_dssp             SC--EEESCGGGT
T ss_pred             cC--CCCChHHHH
Confidence            99  667655433

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=98.71  E-value=8.5e-08  Score=98.76  Aligned_cols=65  Identities=14%  Similarity=0.067  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHHhC-CCCcEEeCeEEEEEEEcCCCc-eEEEEEe-CCCceEEEEEcEEEEccCCCCCCc
Q 013303          102 HEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNK-WKVKSRK-KDDVVEEETFDAVVVCNGHFSVPR  169 (446)
Q Consensus       102 ~~~v~~yl~~~~~~~~-l~~~i~~~~~V~~v~~~~~~~-~~v~~~~-~~~~~~~~~~d~VVvAtG~~s~p~  169 (446)
                      +..+...|.+.+.+.+ +.  +++++.|+++...+ +. .-|.+.+ .+++...+.++.||+|||.++..+
T Consensus       133 g~~l~~~L~~~~~~~gnv~--i~~~~~v~~l~~~~-g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s~~~  200 (602)
T 1kf6_A          133 GFHMLHTLFQTSLQFPQIQ--RFDEHFVLDILVDD-GHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVY  200 (602)
T ss_dssp             HHHHHHHHHHHHTTCTTEE--EEETEEEEEEEEET-TEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGS
T ss_pred             HHHHHHHHHHHHHhCCCcE--EEeCCEEEEEEEeC-CEEEEEEEEEcCCCcEEEEEcCeEEECCCCCcccc
Confidence            5678888888888777 66  89999999998765 42 2344443 334445789999999999876544

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.70  E-value=1.9e-08  Score=102.84  Aligned_cols=60  Identities=23%  Similarity=0.203  Sum_probs=47.0

Q ss_pred             CCHHHHHHHHHHHHHHh-CCCCcEEeCeEEEEEEEcCCCc--eEEEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303          100 PGHEEVLRYLQNFAREF-GVDQVVRLHTEVLNARLVESNK--WKVKSRKKDDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       100 ~~~~~v~~yl~~~~~~~-~l~~~i~~~~~V~~v~~~~~~~--~~v~~~~~~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      ..+..+.++|.+.+++. |+.  ++++ +|+++...+ +.  +.|++.++    .++.+|.||+|+|.++.
T Consensus       191 ~~~~~l~~~L~~~~~~~~Gv~--i~~~-~V~~i~~~~-~g~~~~v~~~~G----~~i~ad~vI~A~G~~S~  253 (550)
T 2e4g_A          191 FDAHLVADFLRRFATEKLGVR--HVED-RVEHVQRDA-NGNIESVRTATG----RVFDADLFVDCSGFRGL  253 (550)
T ss_dssp             ECHHHHHHHHHHHHHHHSCCE--EEEC-CEEEEEECT-TSCEEEEEETTS----CEEECSEEEECCGGGCC
T ss_pred             EcHHHHHHHHHHHHHhcCCcE--EEEC-eEeEEEEcC-CCCEEEEEECCC----CEEECCEEEECCCCchh
Confidence            57789999999999998 988  8899 999998755 34  34444333    26899999999996553

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=98.70  E-value=1.7e-08  Score=102.56  Aligned_cols=60  Identities=15%  Similarity=0.149  Sum_probs=46.0

Q ss_pred             CCHHHHHHHHHHHHHH-hCCCCcEEeCeEEEEEEEcCCCce--EEEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303          100 PGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKW--KVKSRKKDDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       100 ~~~~~v~~yl~~~~~~-~~l~~~i~~~~~V~~v~~~~~~~~--~v~~~~~~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      .++..+.++|.+.+++ .|+.  ++++ +|+++...+ +.+  .|++.++.    ++.+|.||.|+|.+|.
T Consensus       172 ~~r~~l~~~L~~~a~~~~Gv~--i~~~-~v~~i~~~~-~g~~~~v~~~~g~----~i~ad~vV~AdG~~S~  234 (526)
T 2pyx_A          172 LNAAKFSQLLTEHCTQKLGVT--HIRD-HVSQIINNQ-HGDIEKLITKQNG----EISGQLFIDCTGAKSL  234 (526)
T ss_dssp             ECHHHHHHHHHHHHHHTSCCE--EEEC-CEEEEEECT-TSCEEEEEESSSC----EEECSEEEECSGGGCC
T ss_pred             EcHHHHHHHHHHHHHhcCCCE--EEEe-EEEEEEecC-CCcEEEEEECCCC----EEEcCEEEECCCcchH
Confidence            4678999999999998 8887  8888 699998765 344  34443322    5899999999997654

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.69  E-value=1.5e-07  Score=94.71  Aligned_cols=105  Identities=26%  Similarity=0.326  Sum_probs=81.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+...                                         
T Consensus       174 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------------  212 (492)
T 3ic9_A          174 PKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANL-----------------------------------------  212 (492)
T ss_dssp             CSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTC-----------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc-----------------------------------------
Confidence            478999999999999999999999999999997643110                                         


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                         -..++.+.+.+..++. +.  ++++++|.+++..+ +...+++.+.+++..++.+|.||+|
T Consensus       213 -------------------~d~~~~~~l~~~l~~~-V~--i~~~~~v~~i~~~~-~~v~v~~~~~~G~~~~i~~D~Vi~a  269 (492)
T 3ic9_A          213 -------------------QDEEMKRYAEKTFNEE-FY--FDAKARVISTIEKE-DAVEVIYFDKSGQKTTESFQYVLAA  269 (492)
T ss_dssp             -------------------CCHHHHHHHHHHHHTT-SE--EETTCEEEEEEECS-SSEEEEEECTTCCEEEEEESEEEEC
T ss_pred             -------------------CCHHHHHHHHHHHhhC-cE--EEECCEEEEEEEcC-CEEEEEEEeCCCceEEEECCEEEEe
Confidence                               0146677777777665 66  89999999998766 5666776643344457999999999


Q ss_pred             cCCCCCCccCC
Q 013303          162 NGHFSVPRLAQ  172 (446)
Q Consensus       162 tG~~s~p~~p~  172 (446)
                      +|  ..|+...
T Consensus       270 ~G--~~p~~~~  278 (492)
T 3ic9_A          270 TG--RKANVDK  278 (492)
T ss_dssp             SC--CEESCSS
T ss_pred             eC--CccCCCC
Confidence            99  6776554

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.69  E-value=7.2e-08  Score=96.34  Aligned_cols=86  Identities=17%  Similarity=0.203  Sum_probs=56.4

Q ss_pred             hCCCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEEEEccCCCCCCc--cCCCCCCCCCCccEEEeeecCCC
Q 013303          116 FGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVVCNGHFSVPR--LAQVPGIDSWPGKQMHSHNYRIP  192 (446)
Q Consensus       116 ~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~VVvAtG~~s~p~--~p~i~G~~~~~g~~~hs~~~~~~  192 (446)
                      .++.  ++++++|++++..+ +.|.|++.+. +++..++.+|.||+|||  ..|+  .+.+.++....|.+....+++..
T Consensus       329 ~~v~--i~~~~~v~~v~~~~-~~~~v~~~~~~~g~~~~~~~D~Vv~AtG--~~p~~~~~~l~~l~~~~g~i~v~~~~~~~  403 (463)
T 3s5w_A          329 PRHA--FRCMTTVERATATA-QGIELALRDAGSGELSVETYDAVILATG--YERQLHRQLLEPLAEYLGDHEIGRDYRLQ  403 (463)
T ss_dssp             CCSE--EETTEEEEEEEEET-TEEEEEEEETTTCCEEEEEESEEEECCC--EECCC-CTTTGGGGGGBC--CCCTTSBCC
T ss_pred             CCeE--EEeCCEEEEEEecC-CEEEEEEEEcCCCCeEEEECCEEEEeeC--CCCCCccchhHHHHHHhCCcccCcccccc
Confidence            3555  89999999998876 7899998864 34556799999999999  5665  44444443322555555555533


Q ss_pred             CC-CCCCEEEEEecC
Q 013303          193 NP-FQDQVVILIGHY  206 (446)
Q Consensus       193 ~~-~~~k~VvVVG~G  206 (446)
                      .. ....+|-++|..
T Consensus       404 ~~~~~~~~Ifa~G~~  418 (463)
T 3s5w_A          404 TDERCKVAIYAQGFS  418 (463)
T ss_dssp             BCTTBCSEEEESSCC
T ss_pred             cCCCCCCeEEEcCCC
Confidence            21 124578888853

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.69  E-value=1.4e-07  Score=94.40  Aligned_cols=105  Identities=23%  Similarity=0.240  Sum_probs=81.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+..                                          
T Consensus       174 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------  211 (468)
T 2qae_A          174 PKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAP------------------------------------------  211 (468)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST------------------------------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcccc------------------------------------------
Confidence            46899999999999999999999999999998754310                                          


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHH-HHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFA-REFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV  160 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~-~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVv  160 (446)
                                      .  -..++.+++.+.. ++.|++  ++++++|.+++..+ +...+++...+++..++.+|.||+
T Consensus       212 ----------------~--~d~~~~~~l~~~l~~~~gv~--i~~~~~v~~i~~~~-~~~~v~~~~~~g~~~~i~~D~vv~  270 (468)
T 2qae_A          212 ----------------T--LDEDVTNALVGALAKNEKMK--FMTSTKVVGGTNNG-DSVSLEVEGKNGKRETVTCEALLV  270 (468)
T ss_dssp             ----------------T--SCHHHHHHHHHHHHHHTCCE--EECSCEEEEEEECS-SSEEEEEECC---EEEEEESEEEE
T ss_pred             ----------------c--CCHHHHHHHHHHHhhcCCcE--EEeCCEEEEEEEcC-CeEEEEEEcCCCceEEEECCEEEE
Confidence                            0  0156778888888 888998  99999999998765 557777652222234789999999


Q ss_pred             ccCCCCCCccC
Q 013303          161 CNGHFSVPRLA  171 (446)
Q Consensus       161 AtG~~s~p~~p  171 (446)
                      |+|  ..|+..
T Consensus       271 a~G--~~p~~~  279 (468)
T 2qae_A          271 SVG--RRPFTG  279 (468)
T ss_dssp             CSC--EEECCT
T ss_pred             CCC--cccCCC
Confidence            999  666654

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.68  E-value=1.7e-07  Score=94.41  Aligned_cols=106  Identities=25%  Similarity=0.286  Sum_probs=84.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+...                                         
T Consensus       198 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------------  236 (491)
T 3urh_A          198 PASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGG-----------------------------------------  236 (491)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSS-----------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecccccccc-----------------------------------------
Confidence            468999999999999999999999999999987643110                                         


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCC-CceEEEEEcEEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVV  160 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~-~~~~~~~~d~VVv  160 (446)
                                         -..++.+.+.+..++.|+.  ++++++|.+++..+ +...+.+.+.. ++..++.+|.||+
T Consensus       237 -------------------~d~~~~~~l~~~l~~~gV~--v~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~i~~D~Vi~  294 (491)
T 3urh_A          237 -------------------MDGEVAKQLQRMLTKQGID--FKLGAKVTGAVKSG-DGAKVTFEPVKGGEATTLDAEVVLI  294 (491)
T ss_dssp             -------------------SCHHHHHHHHHHHHHTTCE--EECSEEEEEEEEET-TEEEEEEEETTSCCCEEEEESEEEE
T ss_pred             -------------------CCHHHHHHHHHHHHhCCCE--EEECCeEEEEEEeC-CEEEEEEEecCCCceEEEEcCEEEE
Confidence                               0157788888888888998  99999999998876 66777777632 3345789999999


Q ss_pred             ccCCCCCCccCC
Q 013303          161 CNGHFSVPRLAQ  172 (446)
Q Consensus       161 AtG~~s~p~~p~  172 (446)
                      |+|  ..|+...
T Consensus       295 a~G--~~p~~~~  304 (491)
T 3urh_A          295 ATG--RKPSTDG  304 (491)
T ss_dssp             CCC--CEECCTT
T ss_pred             eeC--CccCCCc
Confidence            999  6666543

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.67  E-value=1.3e-07  Score=95.47  Aligned_cols=103  Identities=17%  Similarity=0.371  Sum_probs=80.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+..                                          
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------  213 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR------------------------------------------  213 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT------------------------------------------
T ss_pred             CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCc------------------------------------------
Confidence            36899999999999999999999999999998764310                                          


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                      .  -..++.+.+.+..++.|++  ++++++|.+++..+++...|++.++.  . .+.+|.||+|
T Consensus       214 ----------------~--~d~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~~~~~~v~~~~g~--~-~~~~D~vi~a  270 (500)
T 1onf_A          214 ----------------K--FDESVINVLENDMKKNNIN--IVTFADVVEIKKVSDKNLSIHLSDGR--I-YEHFDHVIYC  270 (500)
T ss_dssp             ----------------T--SCHHHHHHHHHHHHHTTCE--EECSCCEEEEEESSTTCEEEEETTSC--E-EEEESEEEEC
T ss_pred             ----------------c--cchhhHHHHHHHHHhCCCE--EEECCEEEEEEEcCCceEEEEECCCc--E-EEECCEEEEC
Confidence                            0  0156778888888999998  99999999998764344666665432  1 3899999999


Q ss_pred             cCCCCCCccC
Q 013303          162 NGHFSVPRLA  171 (446)
Q Consensus       162 tG~~s~p~~p  171 (446)
                      +|  ..|+..
T Consensus       271 ~G--~~p~~~  278 (500)
T 1onf_A          271 VG--RSPDTE  278 (500)
T ss_dssp             CC--BCCTTT
T ss_pred             CC--CCcCCC
Confidence            99  677654

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.67  E-value=1.2e-07  Score=94.96  Aligned_cols=105  Identities=24%  Similarity=0.273  Sum_probs=82.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+..                                          
T Consensus       177 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------  214 (470)
T 1dxl_A          177 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP------------------------------------------  214 (470)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST------------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc------------------------------------------
Confidence            47899999999999999999999999999999754310                                          


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVV  160 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~VVv  160 (446)
                                      .  ...++.+++.+..++.|+.  ++++++|.+++..+ +...|++.+. +++..++.+|.||+
T Consensus       215 ----------------~--~~~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~~~~D~vv~  273 (470)
T 1dxl_A          215 ----------------T--MDAEIRKQFQRSLEKQGMK--FKLKTKVVGVDTSG-DGVKLTVEPSAGGEQTIIEADVVLV  273 (470)
T ss_dssp             ----------------T--SCHHHHHHHHHHHHHSSCC--EECSEEEEEEECSS-SSEEEEEEESSSCCCEEEEESEEEC
T ss_pred             ----------------c--ccHHHHHHHHHHHHHcCCE--EEeCCEEEEEEEcC-CeEEEEEEecCCCcceEEECCEEEE
Confidence                            0  0157788888989999998  99999999998755 4566776532 22234789999999


Q ss_pred             ccCCCCCCccC
Q 013303          161 CNGHFSVPRLA  171 (446)
Q Consensus       161 AtG~~s~p~~p  171 (446)
                      |+|  ..|+..
T Consensus       274 a~G--~~p~~~  282 (470)
T 1dxl_A          274 SAG--RTPFTS  282 (470)
T ss_dssp             CCC--EEECCT
T ss_pred             CCC--CCcCCC
Confidence            999  666654

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.66  E-value=4.1e-08  Score=101.90  Aligned_cols=63  Identities=13%  Similarity=0.169  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCc-eEEEEEe-CCCceEEEEEcEEEEccCCCCC
Q 013303          102 HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRK-KDDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       102 ~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~-~~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      +..+...|.+.+.+.|+.  +++++.|+++...+ +. .-|.+.+ .+++...+.++.||+|||.++.
T Consensus       157 G~~l~~~L~~~a~~~gv~--i~~~~~v~~L~~~~-g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~  221 (660)
T 2bs2_A          157 GHTMLFAVANECLKLGVS--IQDRKEAIALIHQD-GKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGR  221 (660)
T ss_dssp             HHHHHHHHHHHHHHHTCE--EECSEEEEEEEEET-TEEEEEEEEETTTCCEEEEECSEEEECCCCCGG
T ss_pred             HHHHHHHHHHHHHhCCCE--EEECcEEEEEEecC-CEEEEEEEEECCCCcEEEEEcCEEEEccCcchh
Confidence            568888999999888988  99999999997654 43 2344443 3344557899999999998664

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.65  E-value=2.3e-07  Score=92.68  Aligned_cols=105  Identities=22%  Similarity=0.243  Sum_probs=82.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+..                                          
T Consensus       171 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------  208 (464)
T 2a8x_A          171 PKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALP------------------------------------------  208 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST------------------------------------------
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCcccc------------------------------------------
Confidence            47899999999999999999999999999999764310                                          


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                      .  -..++.+++.+..++.|+.  ++++++|.+++..+ +...+.+.+ +++..++.+|.||+|
T Consensus       209 ----------------~--~~~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~-~~~~v~~~~-~g~~~~~~~D~vv~a  266 (464)
T 2a8x_A          209 ----------------N--EDADVSKEIEKQFKKLGVT--ILTATKVESIADGG-SQVTVTVTK-DGVAQELKAEKVLQA  266 (464)
T ss_dssp             ----------------T--SCHHHHHHHHHHHHHHTCE--EECSCEEEEEEECS-SCEEEEEES-SSCEEEEEESEEEEC
T ss_pred             ----------------c--cCHHHHHHHHHHHHHcCCE--EEeCcEEEEEEEcC-CeEEEEEEc-CCceEEEEcCEEEEC
Confidence                            0  0156778888888899998  99999999998765 456666652 222357899999999


Q ss_pred             cCCCCCCccCC
Q 013303          162 NGHFSVPRLAQ  172 (446)
Q Consensus       162 tG~~s~p~~p~  172 (446)
                      +|  ..|+...
T Consensus       267 ~G--~~p~~~~  275 (464)
T 2a8x_A          267 IG--FAPNVEG  275 (464)
T ss_dssp             SC--EEECCSS
T ss_pred             CC--CCccCCC
Confidence            99  6676543

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.64  E-value=6e-08  Score=96.82  Aligned_cols=102  Identities=22%  Similarity=0.236  Sum_probs=78.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||++|+.+|..|++.|.+|+++|+.+.+...                                         
T Consensus       171 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------------  209 (458)
T 1lvl_A          171 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT-----------------------------------------  209 (458)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-----------------------------------------
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccccc-----------------------------------------
Confidence            478999999999999999999999999999997643110                                         


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                         ...++.+++.+..++.|++  ++++++|.+++. + + ..++  ..+++..++.+|.||+|
T Consensus       210 -------------------~~~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~-~-~-v~v~--~~~G~~~~i~~D~vv~a  263 (458)
T 1lvl_A          210 -------------------YDSELTAPVAESLKKLGIA--LHLGHSVEGYEN-G-C-LLAN--DGKGGQLRLEADRVLVA  263 (458)
T ss_dssp             -------------------SCHHHHHHHHHHHHHHTCE--EETTCEEEEEET-T-E-EEEE--CSSSCCCEECCSCEEEC
T ss_pred             -------------------cCHHHHHHHHHHHHHCCCE--EEECCEEEEEEe-C-C-EEEE--ECCCceEEEECCEEEEC
Confidence                               0146778888888888998  999999999986 3 3 3333  22232247899999999


Q ss_pred             cCCCCCCccCC
Q 013303          162 NGHFSVPRLAQ  172 (446)
Q Consensus       162 tG~~s~p~~p~  172 (446)
                      +|  ..|+.+.
T Consensus       264 ~G--~~p~~~~  272 (458)
T 1lvl_A          264 VG--RRPRTKG  272 (458)
T ss_dssp             CC--EEECCSS
T ss_pred             cC--CCcCCCC
Confidence            99  6777653

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.64  E-value=3e-07  Score=92.21  Aligned_cols=106  Identities=27%  Similarity=0.345  Sum_probs=81.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++|+.+.+...                                         
T Consensus       178 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------------  216 (474)
T 1zmd_A          178 PEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGV-----------------------------------------  216 (474)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCS-----------------------------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCc-----------------------------------------
Confidence            468999999999999999999999999999997643100                                         


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCc-eEEEEEeC-CCceEEEEEcEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRKK-DDVVEEETFDAVV  159 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~~-~~~~~~~~~d~VV  159 (446)
                                      .+  ..++.+++.+..++.|+.  ++++++|.+++..+ +. ..+++.+. .++..++.+|.||
T Consensus       217 ----------------~~--~~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~-~~~~~v~~~~~~~~~~~~i~~D~vv  275 (474)
T 1zmd_A          217 ----------------GI--DMEISKNFQRILQKQGFK--FKLNTKVTGATKKS-DGKIDVSIEAASGGKAEVITCDVLL  275 (474)
T ss_dssp             ----------------SC--CHHHHHHHHHHHHHTTCE--EECSEEEEEEEECT-TSCEEEEEEETTSCCCEEEEESEEE
T ss_pred             ----------------cc--CHHHHHHHHHHHHHCCCE--EEeCceEEEEEEcC-CceEEEEEEecCCCCceEEEcCEEE
Confidence                            00  156778888889999998  99999999998765 44 66765431 1123478999999


Q ss_pred             EccCCCCCCccC
Q 013303          160 VCNGHFSVPRLA  171 (446)
Q Consensus       160 vAtG~~s~p~~p  171 (446)
                      +|+|  ..|+..
T Consensus       276 ~a~G--~~p~~~  285 (474)
T 1zmd_A          276 VCIG--RRPFTK  285 (474)
T ss_dssp             ECSC--EEECCT
T ss_pred             ECcC--CCcCCC
Confidence            9999  666654

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.63  E-value=1.3e-07  Score=94.59  Aligned_cols=102  Identities=21%  Similarity=0.225  Sum_probs=79.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+..                                          
T Consensus       166 ~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~------------------------------------------  203 (463)
T 2r9z_A          166 PKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLF------------------------------------------  203 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST------------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcccc------------------------------------------
Confidence            46899999999999999999999999999998753310                                          


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                      .+  ..++.+.+.+..++.|+.  ++++++|.+++..+ +...|++.++  +. ++.+|.||+|
T Consensus       204 ----------------~~--~~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~-~~~~v~~~~G--~~-~i~~D~vv~a  259 (463)
T 2r9z_A          204 ----------------QF--DPLLSATLAENMHAQGIE--THLEFAVAALERDA-QGTTLVAQDG--TR-LEGFDSVIWA  259 (463)
T ss_dssp             ----------------TS--CHHHHHHHHHHHHHTTCE--EESSCCEEEEEEET-TEEEEEETTC--CE-EEEESEEEEC
T ss_pred             ----------------cc--CHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEeC-CeEEEEEeCC--cE-EEEcCEEEEC
Confidence                            00  146677888888888988  99999999998765 4466665433  22 6899999999


Q ss_pred             cCCCCCCccC
Q 013303          162 NGHFSVPRLA  171 (446)
Q Consensus       162 tG~~s~p~~p  171 (446)
                      +|  ..|+..
T Consensus       260 ~G--~~p~~~  267 (463)
T 2r9z_A          260 VG--RAPNTR  267 (463)
T ss_dssp             SC--EEESCT
T ss_pred             CC--CCcCCC
Confidence            99  667664

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=98.63  E-value=1e-08  Score=104.29  Aligned_cols=64  Identities=20%  Similarity=0.109  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHH-hCCCCcEEeCeEEEEEEEcCCC------c-eEEEEEe-CCCceEEEEEcEEEEccCCCCC
Q 013303          102 HEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESN------K-WKVKSRK-KDDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       102 ~~~v~~yl~~~~~~-~~l~~~i~~~~~V~~v~~~~~~------~-~~v~~~~-~~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      +..+.+.|.+.+++ .++.  +++++.|+++...+++      . +-|.+.+ .+++...+.++.||+|||.++.
T Consensus       137 g~~l~~~L~~~~~~~~gv~--i~~~~~v~~L~~~~~g~~~~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~  209 (540)
T 1chu_A          137 GREVETTLVSKALNHPNIR--VLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASK  209 (540)
T ss_dssp             -----CCCHHHHHHCTTEE--EECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGG
T ss_pred             HHHHHHHHHHHHHcCCCCE--EEeCcEEEEEEEcCCCCcccCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCccc
Confidence            34666777777877 6777  9999999999873323      3 3355654 2344567899999999997663

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.63  E-value=6.7e-08  Score=93.18  Aligned_cols=43  Identities=40%  Similarity=0.652  Sum_probs=40.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeC-CCcCceeeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG-EQVGGSWIYT   44 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~-~~~GG~w~~~   44 (446)
                      .+||+|||||++||+||..|.+.|++|+|||++ +.+||.|...
T Consensus        44 ~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t~   87 (376)
T 2e1m_A           44 PKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTF   87 (376)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCEE
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceeee
Confidence            479999999999999999999999999999999 9999988753

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.63  E-value=2.4e-07  Score=92.94  Aligned_cols=104  Identities=25%  Similarity=0.328  Sum_probs=83.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+..                                          
T Consensus       180 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------  217 (476)
T 3lad_A          180 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP------------------------------------------  217 (476)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST------------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc------------------------------------------
Confidence            46899999999999999999999999999999753310                                          


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                      .  -..++.+.+.+..++.|+.  ++++++|.+++..+ +...+++.++++ ..++.+|.||+|
T Consensus       218 ----------------~--~~~~~~~~l~~~l~~~Gv~--v~~~~~v~~i~~~~-~~~~v~~~~~~g-~~~~~~D~vi~a  275 (476)
T 3lad_A          218 ----------------A--VDEQVAKEAQKILTKQGLK--ILLGARVTGTEVKN-KQVTVKFVDAEG-EKSQAFDKLIVA  275 (476)
T ss_dssp             ----------------T--SCHHHHHHHHHHHHHTTEE--EEETCEEEEEEECS-SCEEEEEESSSE-EEEEEESEEEEC
T ss_pred             ----------------c--cCHHHHHHHHHHHHhCCCE--EEECCEEEEEEEcC-CEEEEEEEeCCC-cEEEECCEEEEe
Confidence                            0  0156778888888888988  99999999998766 567777776543 357899999999


Q ss_pred             cCCCCCCccC
Q 013303          162 NGHFSVPRLA  171 (446)
Q Consensus       162 tG~~s~p~~p  171 (446)
                      +|  ..|+..
T Consensus       276 ~G--~~p~~~  283 (476)
T 3lad_A          276 VG--RRPVTT  283 (476)
T ss_dssp             SC--EEECCT
T ss_pred             eC--CcccCC
Confidence            99  666654

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.63  E-value=4.3e-08  Score=97.58  Aligned_cols=61  Identities=21%  Similarity=0.218  Sum_probs=46.1

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEE---------------cCCCceEEEEEeCCCceEEE--EEcEEEEcc
Q 013303          100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARL---------------VESNKWKVKSRKKDDVVEEE--TFDAVVVCN  162 (446)
Q Consensus       100 ~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~---------------~~~~~~~v~~~~~~~~~~~~--~~d~VVvAt  162 (446)
                      ....++...|.+.+++.|+.  ++++++|+++..               .++..|.|.+.++     ++  .+|.||+|+
T Consensus       178 ~~~~~l~~~L~~~~~~~Gv~--i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-----~i~~~Ad~VV~At  250 (448)
T 3axb_A          178 LDAEKVVDYYYRRASGAGVE--FIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-----TRVEVGEKLVVAA  250 (448)
T ss_dssp             CCHHHHHHHHHHHHHHTTCE--EEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-----CEEEEEEEEEECC
T ss_pred             EcHHHHHHHHHHHHHhCCCE--EEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-----EEeecCCEEEECC
Confidence            35678888999999999988  999999999987               3312245554332     47  999999999


Q ss_pred             CCCCC
Q 013303          163 GHFSV  167 (446)
Q Consensus       163 G~~s~  167 (446)
                      |.++.
T Consensus       251 G~~s~  255 (448)
T 3axb_A          251 GVWSN  255 (448)
T ss_dssp             GGGHH
T ss_pred             CcCHH
Confidence            97654

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.62  E-value=1.5e-07  Score=94.80  Aligned_cols=102  Identities=20%  Similarity=0.274  Sum_probs=81.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHC---CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLRE---GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM   78 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~---g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~   78 (446)
                      .++|+|||||+.|+.+|..|++.   |.+|+++++.+.+..                                       
T Consensus       187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~---------------------------------------  227 (490)
T 1fec_A          187 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILR---------------------------------------  227 (490)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSST---------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCccc---------------------------------------
Confidence            46899999999999999999999   999999999764310                                       


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEE
Q 013303           79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV  158 (446)
Q Consensus        79 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~V  158 (446)
                                         .+  ..++.+.+.+.+++.|+.  ++++++|.+++..+++...|++.++.    ++.+|.|
T Consensus       228 -------------------~~--d~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~~~~~~v~~~~G~----~i~~D~v  280 (490)
T 1fec_A          228 -------------------GF--DSELRKQLTEQLRANGIN--VRTHENPAKVTKNADGTRHVVFESGA----EADYDVV  280 (490)
T ss_dssp             -------------------TS--CHHHHHHHHHHHHHTTEE--EEETCCEEEEEECTTSCEEEEETTSC----EEEESEE
T ss_pred             -------------------cc--CHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCCCEEEEEECCCc----EEEcCEE
Confidence                               00  146778888888899988  99999999998765334667665442    7899999


Q ss_pred             EEccCCCCCCccC
Q 013303          159 VVCNGHFSVPRLA  171 (446)
Q Consensus       159 VvAtG~~s~p~~p  171 (446)
                      |+|+|  ..|+..
T Consensus       281 v~a~G--~~p~~~  291 (490)
T 1fec_A          281 MLAIG--RVPRSQ  291 (490)
T ss_dssp             EECSC--EEESCT
T ss_pred             EEccC--CCcCcc
Confidence            99999  666654

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.61  E-value=9.4e-08  Score=93.98  Aligned_cols=101  Identities=21%  Similarity=0.276  Sum_probs=80.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+....                                        
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~----------------------------------------  182 (410)
T 3ef6_A          143 ATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRV----------------------------------------  182 (410)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHHH----------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccchhh----------------------------------------
Confidence            4789999999999999999999999999999875431100                                        


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                         -..++.+++.+..++.|++  ++++++|.+++..+ ....|++.++.    ++.+|.||+|
T Consensus       183 -------------------~~~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~-~~~~v~~~dg~----~i~aD~Vv~a  236 (410)
T 3ef6_A          183 -------------------LGRRIGAWLRGLLTELGVQ--VELGTGVVGFSGEG-QLEQVMASDGR----SFVADSALIC  236 (410)
T ss_dssp             -------------------HCHHHHHHHHHHHHHHTCE--EECSCCEEEEECSS-SCCEEEETTSC----EEECSEEEEC
T ss_pred             -------------------cCHHHHHHHHHHHHHCCCE--EEeCCEEEEEeccC-cEEEEEECCCC----EEEcCEEEEe
Confidence                               0156778888888999998  99999999998654 44567766553    7899999999


Q ss_pred             cCCCCCCcc
Q 013303          162 NGHFSVPRL  170 (446)
Q Consensus       162 tG~~s~p~~  170 (446)
                      +|  ..|+.
T Consensus       237 ~G--~~p~~  243 (410)
T 3ef6_A          237 VG--AEPAD  243 (410)
T ss_dssp             SC--EEECC
T ss_pred             eC--CeecH
Confidence            99  56654

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.61  E-value=1.9e-07  Score=91.95  Aligned_cols=101  Identities=27%  Similarity=0.265  Sum_probs=80.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||+|+.|+.+|..|++.|.+|+++++.+.+..                                          
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~------------------------------------------  189 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLA------------------------------------------  189 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT------------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhh------------------------------------------
Confidence            57899999999999999999999999999998753300                                          


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCc-eEEEEEeCCCceEEEEEcEEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRKKDDVVEEETFDAVVV  160 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~~~~~~~~~~~d~VVv  160 (446)
                                     ..  ...++.+++.+..++.|++  ++++++|.++...+ +. ..|.+.++.    ++.+|.||+
T Consensus       190 ---------------~~--~~~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~-~~v~~v~l~dG~----~i~aD~Vv~  245 (415)
T 3lxd_A          190 ---------------RV--AGEALSEFYQAEHRAHGVD--LRTGAAMDCIEGDG-TKVTGVRMQDGS----VIPADIVIV  245 (415)
T ss_dssp             ---------------TT--SCHHHHHHHHHHHHHTTCE--EEETCCEEEEEESS-SBEEEEEESSSC----EEECSEEEE
T ss_pred             ---------------hh--cCHHHHHHHHHHHHhCCCE--EEECCEEEEEEecC-CcEEEEEeCCCC----EEEcCEEEE
Confidence                           00  0157888899999999998  99999999998754 33 356665553    789999999


Q ss_pred             ccCCCCCCcc
Q 013303          161 CNGHFSVPRL  170 (446)
Q Consensus       161 AtG~~s~p~~  170 (446)
                      |+|  ..|+.
T Consensus       246 a~G--~~p~~  253 (415)
T 3lxd_A          246 GIG--IVPCV  253 (415)
T ss_dssp             CSC--CEESC
T ss_pred             CCC--CccCh
Confidence            999  66664

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.60  E-value=9.9e-08  Score=95.90  Aligned_cols=105  Identities=19%  Similarity=0.212  Sum_probs=80.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++|+.+.+..                                          
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~------------------------------------------  222 (482)
T 1ojt_A          185 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ------------------------------------------  222 (482)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSST------------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccc------------------------------------------
Confidence            47899999999999999999999999999998764310                                          


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                      .  -..++.+.+.+..++.|+.  ++++++|.+++..+ +...|++.+..+...++.+|.||+|
T Consensus       223 ----------------~--~~~~~~~~l~~~l~~~gV~--i~~~~~v~~i~~~~-~~~~v~~~~~~~~g~~~~~D~vv~a  281 (482)
T 1ojt_A          223 ----------------G--ADRDLVKVWQKQNEYRFDN--IMVNTKTVAVEPKE-DGVYVTFEGANAPKEPQRYDAVLVA  281 (482)
T ss_dssp             ----------------T--SCHHHHHHHHHHHGGGEEE--EECSCEEEEEEEET-TEEEEEEESSSCCSSCEEESCEEEC
T ss_pred             ----------------c--cCHHHHHHHHHHHHhcCCE--EEECCEEEEEEEcC-CeEEEEEeccCCCceEEEcCEEEEC
Confidence                            0  0156778888888888888  99999999998765 4566776641110125789999999


Q ss_pred             cCCCCCCccC
Q 013303          162 NGHFSVPRLA  171 (446)
Q Consensus       162 tG~~s~p~~p  171 (446)
                      +|  ..|+..
T Consensus       282 ~G--~~p~~~  289 (482)
T 1ojt_A          282 AG--RAPNGK  289 (482)
T ss_dssp             CC--EEECGG
T ss_pred             cC--CCcCCC
Confidence            99  667653

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.60  E-value=1.9e-07  Score=94.14  Aligned_cols=102  Identities=15%  Similarity=0.160  Sum_probs=80.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHC---CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLRE---GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM   78 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~---g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~   78 (446)
                      .++|+|||||+.|+.+|..|++.   |.+|+++++.+.+..                                       
T Consensus       191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~---------------------------------------  231 (495)
T 2wpf_A          191 PRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILR---------------------------------------  231 (495)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCT---------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCcccc---------------------------------------
Confidence            36899999999999999999999   999999998764310                                       


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEE
Q 013303           79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV  158 (446)
Q Consensus        79 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~V  158 (446)
                                         .  -..++.+.+.+.+++.|+.  ++++++|.+++..+++...|++.++.    ++.+|.|
T Consensus       232 -------------------~--~d~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~~~~~~v~~~~G~----~i~~D~v  284 (495)
T 2wpf_A          232 -------------------G--FDETIREEVTKQLTANGIE--IMTNENPAKVSLNTDGSKHVTFESGK----TLDVDVV  284 (495)
T ss_dssp             -------------------T--SCHHHHHHHHHHHHHTTCE--EEESCCEEEEEECTTSCEEEEETTSC----EEEESEE
T ss_pred             -------------------c--cCHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCCceEEEEECCCc----EEEcCEE
Confidence                               0  0146778888888899998  99999999998764334667665443    7899999


Q ss_pred             EEccCCCCCCccC
Q 013303          159 VVCNGHFSVPRLA  171 (446)
Q Consensus       159 VvAtG~~s~p~~p  171 (446)
                      |+|+|  ..|+..
T Consensus       285 v~a~G--~~p~~~  295 (495)
T 2wpf_A          285 MMAIG--RIPRTN  295 (495)
T ss_dssp             EECSC--EEECCG
T ss_pred             EECCC--Cccccc
Confidence            99999  666653

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=98.59  E-value=2.3e-08  Score=100.98  Aligned_cols=41  Identities=32%  Similarity=0.527  Sum_probs=32.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI   42 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~   42 (446)
                      ||+|+|||||++||+||..|++.|++|+|+|+++.+||...
T Consensus         1 Mk~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~GG~~~   41 (501)
T 4dgk_A            1 MKPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAY   41 (501)
T ss_dssp             CCCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-------C
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCCCcEE
Confidence            68999999999999999999999999999999999998543

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.59  E-value=3.2e-07  Score=91.37  Aligned_cols=103  Identities=24%  Similarity=0.270  Sum_probs=80.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+...                                         
T Consensus       147 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------------  185 (452)
T 3oc4_A          147 SQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPK-----------------------------------------  185 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-----------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccccc-----------------------------------------
Confidence            478999999999999999999999999999987533100                                         


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                      .+  ..++.+.+.+.+++.|+.  ++++++|.+++..+ +...|.+.+  +   ++.+|.||+|
T Consensus       186 ----------------~~--d~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~-~~v~v~~~~--g---~i~aD~Vv~A  239 (452)
T 3oc4_A          186 ----------------YF--DKEMVAEVQKSLEKQAVI--FHFEETVLGIEETA-NGIVLETSE--Q---EISCDSGIFA  239 (452)
T ss_dssp             ----------------TC--CHHHHHHHHHHHHTTTEE--EEETCCEEEEEECS-SCEEEEESS--C---EEEESEEEEC
T ss_pred             ----------------cC--CHHHHHHHHHHHHHcCCE--EEeCCEEEEEEccC-CeEEEEECC--C---EEEeCEEEEC
Confidence                            00  157788888888888988  99999999998655 555555532  2   6899999999


Q ss_pred             cCCCCCCccCCC
Q 013303          162 NGHFSVPRLAQV  173 (446)
Q Consensus       162 tG~~s~p~~p~i  173 (446)
                      +|  ..|+...+
T Consensus       240 ~G--~~p~~~~l  249 (452)
T 3oc4_A          240 LN--LHPQLAYL  249 (452)
T ss_dssp             SC--CBCCCSSC
T ss_pred             cC--CCCChHHH
Confidence            99  67766543

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=98.59  E-value=9e-07  Score=91.94  Aligned_cols=68  Identities=10%  Similarity=0.016  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHh-CC-CCcEEeCeEEEEEEEcCC--Cce-EEEEEe-CCCceEEEEEcEEEEccCCCCCCccCC
Q 013303          103 EEVLRYLQNFAREF-GV-DQVVRLHTEVLNARLVES--NKW-KVKSRK-KDDVVEEETFDAVVVCNGHFSVPRLAQ  172 (446)
Q Consensus       103 ~~v~~yl~~~~~~~-~l-~~~i~~~~~V~~v~~~~~--~~~-~v~~~~-~~~~~~~~~~d~VVvAtG~~s~p~~p~  172 (446)
                      ..+...|.+.+++. |+ .  +.+++.|+++...++  +.. -|...+ .++....+.++.||+|||.++.-..|.
T Consensus       151 ~~~~~~l~~~~~~~~gv~~--i~~~~~v~~L~~~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~~~~y~~~  224 (643)
T 1jnr_A          151 ESYKPIIAEAAKMAVGEEN--IYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGATLLFRPR  224 (643)
T ss_dssp             TTHHHHHHHHHHHHHCGGG--EECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCSSSCCS
T ss_pred             HHHHHHHHHHHHhcCCCcE--EEecCEEEEEEEcCCccceeEEEEEEEecCCcEEEEEcCEEEECCCcccccccCc
Confidence            34667777778777 88 7  999999999987652  132 233333 234445789999999999877644443

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.58  E-value=1.6e-07  Score=92.05  Aligned_cols=102  Identities=24%  Similarity=0.244  Sum_probs=79.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...                                         
T Consensus       142 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~-----------------------------------------  180 (404)
T 3fg2_P          142 KKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMAR-----------------------------------------  180 (404)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT-----------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhh-----------------------------------------
Confidence            468999999999999999999999999999987533000                                         


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                      .  ...++.+++.+..++.|++  ++++++|.++...++....|.+.++.    ++.+|.||+|
T Consensus       181 ----------------~--~~~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~~~v~~V~~~dG~----~i~aD~Vv~a  236 (404)
T 3fg2_P          181 ----------------V--VTPEISSYFHDRHSGAGIR--MHYGVRATEIAAEGDRVTGVVLSDGN----TLPCDLVVVG  236 (404)
T ss_dssp             ----------------T--SCHHHHHHHHHHHHHTTCE--EECSCCEEEEEEETTEEEEEEETTSC----EEECSEEEEC
T ss_pred             ----------------c--cCHHHHHHHHHHHHhCCcE--EEECCEEEEEEecCCcEEEEEeCCCC----EEEcCEEEEC
Confidence                            0  0157788899999999998  99999999998764122345555543    7899999999


Q ss_pred             cCCCCCCcc
Q 013303          162 NGHFSVPRL  170 (446)
Q Consensus       162 tG~~s~p~~  170 (446)
                      +|  ..|+.
T Consensus       237 ~G--~~p~~  243 (404)
T 3fg2_P          237 VG--VIPNV  243 (404)
T ss_dssp             CC--EEECC
T ss_pred             cC--CccCH
Confidence            99  56654

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.58  E-value=1.8e-07  Score=91.82  Aligned_cols=97  Identities=19%  Similarity=0.260  Sum_probs=77.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+...                                         
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------------  183 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR-----------------------------------------  183 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-----------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccc-----------------------------------------
Confidence            478999999999999999999999999999997633100                                         


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                      .  ...++.+++.+..++.|++  ++++++|.+++  + +  .|++.++.    ++.+|.||+|
T Consensus       184 ----------------~--~~~~~~~~l~~~l~~~GV~--i~~~~~v~~i~--~-~--~v~~~~g~----~i~~D~vi~a  234 (408)
T 2gqw_A          184 ----------------A--APATLADFVARYHAAQGVD--LRFERSVTGSV--D-G--VVLLDDGT----RIAADMVVVG  234 (408)
T ss_dssp             ----------------T--SCHHHHHHHHHHHHHTTCE--EEESCCEEEEE--T-T--EEEETTSC----EEECSEEEEC
T ss_pred             ----------------c--cCHHHHHHHHHHHHHcCcE--EEeCCEEEEEE--C-C--EEEECCCC----EEEcCEEEEC
Confidence                            0  0156778888888999998  99999999998  3 4  56654442    7899999999


Q ss_pred             cCCCCCCcc
Q 013303          162 NGHFSVPRL  170 (446)
Q Consensus       162 tG~~s~p~~  170 (446)
                      +|  ..|+.
T Consensus       235 ~G--~~p~~  241 (408)
T 2gqw_A          235 IG--VLAND  241 (408)
T ss_dssp             SC--EEECC
T ss_pred             cC--CCccH
Confidence            99  56654

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.58  E-value=1.9e-07  Score=93.66  Aligned_cols=102  Identities=18%  Similarity=0.266  Sum_probs=79.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+..                                          
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------  222 (479)
T 2hqm_A          185 PKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLR------------------------------------------  222 (479)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCT------------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCcccc------------------------------------------
Confidence            47899999999999999999999999999998764310                                          


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCC-ceEEEEEeCCCceEEEEEcEEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN-KWKVKSRKKDDVVEEETFDAVVV  160 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~-~~~v~~~~~~~~~~~~~~d~VVv  160 (446)
                                      .+  ..++.+.+.+..++.|++  ++++++|.+++..+++ ...|++.++  + .++.+|.||+
T Consensus       223 ----------------~~--d~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~~~~~~v~~~~G--~-~~i~~D~vv~  279 (479)
T 2hqm_A          223 ----------------KF--DECIQNTITDHYVKEGIN--VHKLSKIVKVEKNVETDKLKIHMNDS--K-SIDDVDELIW  279 (479)
T ss_dssp             ----------------TS--CHHHHHHHHHHHHHHTCE--EECSCCEEEEEECC-CCCEEEEETTS--C-EEEEESEEEE
T ss_pred             ----------------cc--CHHHHHHHHHHHHhCCeE--EEeCCEEEEEEEcCCCcEEEEEECCC--c-EEEEcCEEEE
Confidence                            00  146778888888888998  9999999999875422 255655443  1 3789999999


Q ss_pred             ccCCCCCCcc
Q 013303          161 CNGHFSVPRL  170 (446)
Q Consensus       161 AtG~~s~p~~  170 (446)
                      |+|  ..|+.
T Consensus       280 a~G--~~p~~  287 (479)
T 2hqm_A          280 TIG--RKSHL  287 (479)
T ss_dssp             CSC--EEECC
T ss_pred             CCC--CCCcc
Confidence            999  66665

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.56  E-value=2.4e-07  Score=91.63  Aligned_cols=101  Identities=24%  Similarity=0.308  Sum_probs=78.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+...                                         
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~-----------------------------------------  187 (431)
T 1q1r_A          149 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLER-----------------------------------------  187 (431)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT-----------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccc-----------------------------------------
Confidence            468999999999999999999999999999986532000                                         


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEE--cCCCce-EEEEEeCCCceEEEEEcEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARL--VESNKW-KVKSRKKDDVVEEETFDAV  158 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~--~~~~~~-~v~~~~~~~~~~~~~~d~V  158 (446)
                                      .  ...++.+++.+.+++.|+.  ++++++|.+++.  .+ +.. .|.+.++.    ++.+|.|
T Consensus       188 ----------------~--~~~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~~~-~~v~~v~~~~G~----~i~~D~V  242 (431)
T 1q1r_A          188 ----------------V--TAPPVSAFYEHLHREAGVD--IRTGTQVCGFEMSTDQ-QKVTAVLCEDGT----RLPADLV  242 (431)
T ss_dssp             ----------------T--SCHHHHHHHHHHHHHHTCE--EECSCCEEEEEECTTT-CCEEEEEETTSC----EEECSEE
T ss_pred             ----------------h--hhHHHHHHHHHHHHhCCeE--EEeCCEEEEEEeccCC-CcEEEEEeCCCC----EEEcCEE
Confidence                            0  0146778888888889998  999999999986  33 333 56655442    7899999


Q ss_pred             EEccCCCCCCcc
Q 013303          159 VVCNGHFSVPRL  170 (446)
Q Consensus       159 VvAtG~~s~p~~  170 (446)
                      |+|+|  ..|+.
T Consensus       243 v~a~G--~~p~~  252 (431)
T 1q1r_A          243 IAGIG--LIPNC  252 (431)
T ss_dssp             EECCC--EEECC
T ss_pred             EECCC--CCcCc
Confidence            99999  55654

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.56  E-value=3e-07  Score=92.78  Aligned_cols=101  Identities=18%  Similarity=0.143  Sum_probs=79.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|.+.|.+|+++++.+.+...                                         
T Consensus       182 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------------  220 (499)
T 1xdi_A          182 PDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPY-----------------------------------------  220 (499)
T ss_dssp             CSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCC-----------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-----------------------------------------
Confidence            468999999999999999999999999999987643100                                         


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                         -..++.+.+.+.+++.|+.  ++++++|.+++..+ +...|...++    .++.+|.||+|
T Consensus       221 -------------------~d~~~~~~l~~~l~~~GV~--i~~~~~V~~i~~~~-~~v~v~~~~g----~~i~aD~Vv~a  274 (499)
T 1xdi_A          221 -------------------EDADAALVLEESFAERGVR--LFKNARAASVTRTG-AGVLVTMTDG----RTVEGSHALMT  274 (499)
T ss_dssp             -------------------SSHHHHHHHHHHHHHTTCE--EETTCCEEEEEECS-SSEEEEETTS----CEEEESEEEEC
T ss_pred             -------------------cCHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEeC-CEEEEEECCC----cEEEcCEEEEC
Confidence                               0146788888889999998  99999999998765 4555554333    26899999999


Q ss_pred             cCCCCCCccC
Q 013303          162 NGHFSVPRLA  171 (446)
Q Consensus       162 tG~~s~p~~p  171 (446)
                      +|  ..|+..
T Consensus       275 ~G--~~p~~~  282 (499)
T 1xdi_A          275 IG--SVPNTS  282 (499)
T ss_dssp             CC--EEECCS
T ss_pred             CC--CCcCCC
Confidence            99  666654

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.55  E-value=1.4e-07  Score=94.81  Aligned_cols=100  Identities=21%  Similarity=0.315  Sum_probs=77.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||++|+.+|..|++.|.+|+++++.+.+...                                         
T Consensus       186 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------------  224 (480)
T 3cgb_A          186 VEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGTI-----------------------------------------  224 (480)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTSS-----------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhhc-----------------------------------------
Confidence            478999999999999999999999999999986533110                                         


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                         -..++.+++.+.+++.|++  ++++++|.+++..+ ..+.+.+.  .   .++.+|.||+|
T Consensus       225 -------------------~~~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~-~v~~v~~~--~---~~i~~D~vi~a  277 (480)
T 3cgb_A          225 -------------------YDGDMAEYIYKEADKHHIE--ILTNENVKAFKGNE-RVEAVETD--K---GTYKADLVLVS  277 (480)
T ss_dssp             -------------------SCHHHHHHHHHHHHHTTCE--EECSCCEEEEEESS-BEEEEEET--T---EEEECSEEEEC
T ss_pred             -------------------CCHHHHHHHHHHHHHcCcE--EEcCCEEEEEEcCC-cEEEEEEC--C---CEEEcCEEEEC
Confidence                               0156778888888999998  99999999998642 22334432  1   26899999999


Q ss_pred             cCCCCCCccC
Q 013303          162 NGHFSVPRLA  171 (446)
Q Consensus       162 tG~~s~p~~p  171 (446)
                      +|  ..|+.+
T Consensus       278 ~G--~~p~~~  285 (480)
T 3cgb_A          278 VG--VKPNTD  285 (480)
T ss_dssp             SC--EEESCG
T ss_pred             cC--CCcChH
Confidence            99  556543

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.55  E-value=2.9e-07  Score=92.07  Aligned_cols=99  Identities=19%  Similarity=0.268  Sum_probs=79.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+.                                           
T Consensus       176 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------------------------------------------  212 (467)
T 1zk7_A          176 PERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFF-------------------------------------------  212 (467)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT-------------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccC-------------------------------------------
Confidence            4789999999999999999999999999999875330                                           


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                        |                ...++.+.+.+.+++.|++  ++++++|.+++..+ +.+.|.+.  .   .++.+|.||+|
T Consensus       213 --~----------------~~~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~-~~~~v~~~--~---~~i~aD~Vv~a  266 (467)
T 1zk7_A          213 --R----------------EDPAIGEAVTAAFRAEGIE--VLEHTQASQVAHMD-GEFVLTTT--H---GELRADKLLVA  266 (467)
T ss_dssp             --T----------------SCHHHHHHHHHHHHHTTCE--EETTCCEEEEEEET-TEEEEEET--T---EEEEESEEEEC
T ss_pred             --C----------------CCHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEeC-CEEEEEEC--C---cEEEcCEEEEC
Confidence              1                0146788888888899998  99999999998764 55666553  1   36899999999


Q ss_pred             cCCCCCCccC
Q 013303          162 NGHFSVPRLA  171 (446)
Q Consensus       162 tG~~s~p~~p  171 (446)
                      +|  ..|+..
T Consensus       267 ~G--~~p~~~  274 (467)
T 1zk7_A          267 TG--RTPNTR  274 (467)
T ss_dssp             SC--EEESCT
T ss_pred             CC--CCcCCC
Confidence            99  566643

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.55  E-value=9.2e-07  Score=88.81  Aligned_cols=105  Identities=20%  Similarity=0.216  Sum_probs=83.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.. +    .                                       
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~----l---------------------------------------  222 (483)
T 3dgh_A          187 PGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSI-V----L---------------------------------------  222 (483)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC-S----S---------------------------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCC-C----C---------------------------------------
Confidence            4689999999999999999999999999998742 1    0                                       


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCC-CceEEEEEcEEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVV  160 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~-~~~~~~~~d~VVv  160 (446)
                        +             .+  ..++.+.+.+..++.|+.  ++++++|.+++..+++...|++.++. ++..++.+|.||+
T Consensus       223 --~-------------~~--d~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~  283 (483)
T 3dgh_A          223 --R-------------GF--DQQMAELVAASMEERGIP--FLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLW  283 (483)
T ss_dssp             --T-------------TS--CHHHHHHHHHHHHHTTCC--EEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEE
T ss_pred             --c-------------cc--CHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEE
Confidence              0             00  157788888889999998  99999999998765455778877764 4456799999999


Q ss_pred             ccCCCCCCccC
Q 013303          161 CNGHFSVPRLA  171 (446)
Q Consensus       161 AtG~~s~p~~p  171 (446)
                      |+|  ..|+..
T Consensus       284 a~G--~~p~~~  292 (483)
T 3dgh_A          284 AIG--RKGLVD  292 (483)
T ss_dssp             CSC--EEECCG
T ss_pred             Ccc--cccCcC
Confidence            999  566654

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.54  E-value=3.7e-07  Score=91.45  Aligned_cols=101  Identities=19%  Similarity=0.181  Sum_probs=80.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHC-CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCccc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~-g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~   80 (446)
                      .++|+|||+|+.|+.+|..|++. |.+|+++++.+.+..                                         
T Consensus       159 ~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~-----------------------------------------  197 (472)
T 3iwa_A          159 VSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMP-----------------------------------------  197 (472)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSST-----------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccc-----------------------------------------
Confidence            46899999999999999999999 999999998653200                                         


Q ss_pred             CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEE
Q 013303           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV  160 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVv  160 (446)
                                      ..  ...++.+.+.+.+++.|++  ++++++|.+++..+ +..+|.+.++.    ++.+|.||+
T Consensus       198 ----------------~~--~~~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~-~~v~v~~~~g~----~i~aD~Vv~  252 (472)
T 3iwa_A          198 ----------------GF--TSKSLSQMLRHDLEKNDVV--VHTGEKVVRLEGEN-GKVARVITDKR----TLDADLVIL  252 (472)
T ss_dssp             ----------------TT--SCHHHHHHHHHHHHHTTCE--EECSCCEEEEEESS-SBEEEEEESSC----EEECSEEEE
T ss_pred             ----------------cc--cCHHHHHHHHHHHHhcCCE--EEeCCEEEEEEccC-CeEEEEEeCCC----EEEcCEEEE
Confidence                            00  0157788888889999998  99999999998755 66667776654    789999999


Q ss_pred             ccCCCCCCcc
Q 013303          161 CNGHFSVPRL  170 (446)
Q Consensus       161 AtG~~s~p~~  170 (446)
                      |+|  ..|+.
T Consensus       253 a~G--~~p~~  260 (472)
T 3iwa_A          253 AAG--VSPNT  260 (472)
T ss_dssp             CSC--EEECC
T ss_pred             CCC--CCcCH
Confidence            999  55554

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.53  E-value=3.5e-07  Score=91.12  Aligned_cols=101  Identities=19%  Similarity=0.217  Sum_probs=77.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+...                                         
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------------  187 (452)
T 2cdu_A          149 AKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYK-----------------------------------------  187 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTT-----------------------------------------
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhh-----------------------------------------
Confidence            478999999999999999999999999999987533000                                         


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceE-EEEEeCCCceEEEEEcEEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSRKKDDVVEEETFDAVVV  160 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~-v~~~~~~~~~~~~~~d~VVv  160 (446)
                                      .  -..++.+.+.+..++.|+.  ++++++|.+++..+ +... +.. ++    .++.+|.||+
T Consensus       188 ----------------~--~~~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~-~~v~~v~~-~g----~~i~~D~vv~  241 (452)
T 2cdu_A          188 ----------------Y--FDKEFTDILAKDYEAHGVN--LVLGSKVAAFEEVD-DEIITKTL-DG----KEIKSDIAIL  241 (452)
T ss_dssp             ----------------T--SCHHHHHHHHHHHHHTTCE--EEESSCEEEEEEET-TEEEEEET-TS----CEEEESEEEE
T ss_pred             ----------------h--hhhhHHHHHHHHHHHCCCE--EEcCCeeEEEEcCC-CeEEEEEe-CC----CEEECCEEEE
Confidence                            0  0156788888889999998  99999999998643 4333 332 22    3789999999


Q ss_pred             ccCCCCCCccC
Q 013303          161 CNGHFSVPRLA  171 (446)
Q Consensus       161 AtG~~s~p~~p  171 (446)
                      |+|  ..|+.+
T Consensus       242 a~G--~~p~~~  250 (452)
T 2cdu_A          242 CIG--FRPNTE  250 (452)
T ss_dssp             CCC--EEECCG
T ss_pred             CcC--CCCCHH
Confidence            999  666654

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.52  E-value=4.1e-07  Score=91.42  Aligned_cols=102  Identities=16%  Similarity=0.284  Sum_probs=81.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||+|+.|+.+|..|++.|.+|+++++.+.+..                                          
T Consensus       191 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------  228 (484)
T 3o0h_A          191 PKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILR------------------------------------------  228 (484)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST------------------------------------------
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCcccc------------------------------------------
Confidence            47899999999999999999999999999998753310                                          


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                      .+  ..++.+.+.+.+++.|+.  ++++++|.+++..+ +.+.|++.++.    ++.+|.||+|
T Consensus       229 ----------------~~--~~~~~~~l~~~l~~~Gv~--i~~~~~V~~i~~~~-~~v~v~~~~g~----~i~aD~Vi~A  283 (484)
T 3o0h_A          229 ----------------NF--DYDLRQLLNDAMVAKGIS--IIYEATVSQVQSTE-NCYNVVLTNGQ----TICADRVMLA  283 (484)
T ss_dssp             ----------------TS--CHHHHHHHHHHHHHHTCE--EESSCCEEEEEECS-SSEEEEETTSC----EEEESEEEEC
T ss_pred             ----------------cc--CHHHHHHHHHHHHHCCCE--EEeCCEEEEEEeeC-CEEEEEECCCc----EEEcCEEEEe
Confidence                            00  146778888888888998  99999999998866 56777765543    7899999999


Q ss_pred             cCCCCCCccCC
Q 013303          162 NGHFSVPRLAQ  172 (446)
Q Consensus       162 tG~~s~p~~p~  172 (446)
                      +|  ..|+...
T Consensus       284 ~G--~~p~~~~  292 (484)
T 3o0h_A          284 TG--RVPNTTG  292 (484)
T ss_dssp             CC--EEECCTT
T ss_pred             eC--CCcCCCC
Confidence            99  5666543

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.52  E-value=7.4e-07  Score=89.38  Aligned_cols=106  Identities=15%  Similarity=0.102  Sum_probs=81.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+..                                          
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------  224 (478)
T 3dk9_A          187 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR------------------------------------------  224 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT------------------------------------------
T ss_pred             CccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCcccc------------------------------------------
Confidence            47899999999999999999999999999998754310                                          


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCC-ceEEEEEeCC-Cce--EEEEEcE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN-KWKVKSRKKD-DVV--EEETFDA  157 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~-~~~v~~~~~~-~~~--~~~~~d~  157 (446)
                                      .  ...++.+++.+..++.|+.  ++++++|.+++..+++ ...|.+.+.. ++.  .++.+|.
T Consensus       225 ----------------~--~d~~~~~~~~~~l~~~gv~--i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~  284 (478)
T 3dk9_A          225 ----------------S--FDSMISTNCTEELENAGVE--VLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDC  284 (478)
T ss_dssp             ----------------T--SCHHHHHHHHHHHHHTTCE--EETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESE
T ss_pred             ----------------c--cCHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCE
Confidence                            0  0156788888888889998  9999999999876533 2455554422 222  5789999


Q ss_pred             EEEccCCCCCCccC
Q 013303          158 VVVCNGHFSVPRLA  171 (446)
Q Consensus       158 VVvAtG~~s~p~~p  171 (446)
                      ||+|+|  ..|+..
T Consensus       285 vi~a~G--~~p~~~  296 (478)
T 3dk9_A          285 LLWAIG--RVPNTK  296 (478)
T ss_dssp             EEECSC--EEESCT
T ss_pred             EEEeec--cccCCC
Confidence            999999  666654

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=98.51  E-value=3.7e-07  Score=91.87  Aligned_cols=100  Identities=22%  Similarity=0.336  Sum_probs=77.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+...                                         
T Consensus       194 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------------  232 (490)
T 2bc0_A          194 IKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAG-----------------------------------------  232 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT-----------------------------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhhh-----------------------------------------
Confidence            478999999999999999999999999999997533100                                         


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCce-EEEEEeCCCceEEEEEcEEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW-KVKSRKKDDVVEEETFDAVVV  160 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~-~v~~~~~~~~~~~~~~d~VVv  160 (446)
                                      .  -..++.+.+.+..++.|++  ++++++|++++. + +.. .|.+ ++    .++.+|.||+
T Consensus       233 ----------------~--~~~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~-~-~~v~~v~~-~g----~~i~~D~Vi~  285 (490)
T 2bc0_A          233 ----------------Y--YDRDLTDLMAKNMEEHGIQ--LAFGETVKEVAG-N-GKVEKIIT-DK----NEYDVDMVIL  285 (490)
T ss_dssp             ----------------T--SCHHHHHHHHHHHHTTTCE--EEETCCEEEEEC-S-SSCCEEEE-SS----CEEECSEEEE
T ss_pred             ----------------H--HHHHHHHHHHHHHHhCCeE--EEeCCEEEEEEc-C-CcEEEEEE-CC----cEEECCEEEE
Confidence                            0  0157788888888888998  999999999985 2 332 3444 33    2789999999


Q ss_pred             ccCCCCCCccC
Q 013303          161 CNGHFSVPRLA  171 (446)
Q Consensus       161 AtG~~s~p~~p  171 (446)
                      |+|  ..|+.+
T Consensus       286 a~G--~~p~~~  294 (490)
T 2bc0_A          286 AVG--FRPNTT  294 (490)
T ss_dssp             CCC--EEECCG
T ss_pred             CCC--CCcChH
Confidence            999  666654

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=98.51  E-value=4.2e-08  Score=99.27  Aligned_cols=41  Identities=32%  Similarity=0.444  Sum_probs=37.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHH-CCCcEEEEeeCCCcCceee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLR-EGHTVVVYEKGEQVGGSWI   42 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~-~g~~v~v~e~~~~~GG~w~   42 (446)
                      ..||+|||||++||+||..|++ .|++|+|+|+++++||.+.
T Consensus        10 ~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~~~   51 (513)
T 4gde_A           10 SVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLAS   51 (513)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCGGGC
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcCCee
Confidence            3689999999999999999997 4999999999999999764

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.49  E-value=5.5e-07  Score=92.33  Aligned_cols=101  Identities=22%  Similarity=0.291  Sum_probs=78.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+.                                           
T Consensus       151 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------------------------------------------  187 (565)
T 3ntd_A          151 VEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVM-------------------------------------------  187 (565)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSC-------------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccc-------------------------------------------
Confidence            3689999999999999999999999999999965320                                           


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEc------------------CCCceEEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV------------------ESNKWKVKS  143 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~------------------~~~~~~v~~  143 (446)
                        |             .  ...++.+++.+.+++.|++  ++++++|.+++..                  .++..++..
T Consensus       188 --~-------------~--~~~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  248 (565)
T 3ntd_A          188 --T-------------P--VDREMAGFAHQAIRDQGVD--LRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTL  248 (565)
T ss_dssp             --T-------------T--SCHHHHHHHHHHHHHTTCE--EEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEE
T ss_pred             --h-------------h--cCHHHHHHHHHHHHHCCCE--EEeCCeEEEEeccccccccccccccccccccCCCcEEEEE
Confidence              0             0  0156778888888899998  9999999999873                  224455555


Q ss_pred             EeCCCceEEEEEcEEEEccCCCCCCcc
Q 013303          144 RKKDDVVEEETFDAVVVCNGHFSVPRL  170 (446)
Q Consensus       144 ~~~~~~~~~~~~d~VVvAtG~~s~p~~  170 (446)
                      .++.    ++.+|.||+|+|  ..|+.
T Consensus       249 ~~g~----~i~~D~vi~a~G--~~p~~  269 (565)
T 3ntd_A          249 SNGE----LLETDLLIMAIG--VRPET  269 (565)
T ss_dssp             TTSC----EEEESEEEECSC--EEECC
T ss_pred             cCCC----EEEcCEEEECcC--Cccch
Confidence            3332    789999999999  56654

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.49  E-value=4.9e-07  Score=91.75  Aligned_cols=102  Identities=18%  Similarity=0.178  Sum_probs=79.5

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d   82 (446)
                      ++|+|||||..|+.+|..|++.|.+|+++++.+.+..                                           
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~-------------------------------------------  251 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKL-------------------------------------------  251 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT-------------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcccc-------------------------------------------
Confidence            7899999999999999999999999999999763310                                           


Q ss_pred             CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCc---eEEEEEeCCCceEEEEEcEEE
Q 013303           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK---WKVKSRKKDDVVEEETFDAVV  159 (446)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~---~~v~~~~~~~~~~~~~~d~VV  159 (446)
                                     .  ...++.+++.+.+++.|+.  ++++++|+++...+++.   +.|++.++  + .++.+|.||
T Consensus       252 ---------------~--~~~~~~~~l~~~l~~~GV~--i~~~~~V~~i~~~~~~~v~~~~v~~~~G--~-~~i~aD~Vv  309 (523)
T 1mo9_A          252 ---------------I--KDNETRAYVLDRMKEQGME--IISGSNVTRIEEDANGRVQAVVAMTPNG--E-MRIETDFVF  309 (523)
T ss_dssp             ---------------C--CSHHHHHHHHHHHHHTTCE--EESSCEEEEEEECTTSBEEEEEEEETTE--E-EEEECSCEE
T ss_pred             ---------------c--ccHHHHHHHHHHHHhCCcE--EEECCEEEEEEEcCCCceEEEEEEECCC--c-EEEEcCEEE
Confidence                           0  0157788888989999998  99999999998755232   55555322  1 368999999


Q ss_pred             EccCCCCCCccC
Q 013303          160 VCNGHFSVPRLA  171 (446)
Q Consensus       160 vAtG~~s~p~~p  171 (446)
                      +|+|  ..|+..
T Consensus       310 ~A~G--~~p~~~  319 (523)
T 1mo9_A          310 LGLG--EQPRSA  319 (523)
T ss_dssp             ECCC--CEECCH
T ss_pred             ECcC--CccCCc
Confidence            9999  566653

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.47  E-value=1.7e-06  Score=87.02  Aligned_cols=105  Identities=16%  Similarity=0.181  Sum_probs=82.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++++...+    .                                       
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l----~---------------------------------------  221 (488)
T 3dgz_A          185 PGKTLVVGASYVALECAGFLTGIGLDTTVMMRSIPL----R---------------------------------------  221 (488)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSS----T---------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCccc----c---------------------------------------
Confidence            368999999999999999999999999999974210    0                                       


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCC-CceEEEEEcEEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVV  160 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~-~~~~~~~~d~VVv  160 (446)
                                      .+  ..++.+.+.+..++.|+.  ++++++|.++...+++...|++.+.. ++..++.+|.||+
T Consensus       222 ----------------~~--d~~~~~~l~~~l~~~gv~--~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~  281 (488)
T 3dgz_A          222 ----------------GF--DQQMSSLVTEHMESHGTQ--FLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLW  281 (488)
T ss_dssp             ----------------TS--CHHHHHHHHHHHHHTTCE--EEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEE
T ss_pred             ----------------cC--CHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEE
Confidence                            00  157788888888999998  99999999998755456778777643 3445689999999


Q ss_pred             ccCCCCCCccC
Q 013303          161 CNGHFSVPRLA  171 (446)
Q Consensus       161 AtG~~s~p~~p  171 (446)
                      |+|  ..|+..
T Consensus       282 a~G--~~p~~~  290 (488)
T 3dgz_A          282 AIG--RVPETR  290 (488)
T ss_dssp             CSC--EEESCG
T ss_pred             ccc--CCcccC
Confidence            999  666654

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.46  E-value=6.7e-07  Score=90.61  Aligned_cols=100  Identities=18%  Similarity=0.108  Sum_probs=80.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      +++++|||||+.|+..|..+++.|.+|+|+++...+                                            
T Consensus       223 P~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L--------------------------------------------  258 (542)
T 4b1b_A          223 PGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVL--------------------------------------------  258 (542)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSS--------------------------------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCeEEEecccccc--------------------------------------------
Confidence            478999999999999999999999999999874311                                            


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                        |.               -..++.+.+....++.++.  +++++.|..+...+ +...|.+.++.    ++.+|.|++|
T Consensus       259 --~~---------------~D~ei~~~l~~~l~~~gi~--~~~~~~v~~~~~~~-~~~~v~~~~~~----~~~~D~vLvA  314 (542)
T 4b1b_A          259 --RG---------------FDQQCAVKVKLYMEEQGVM--FKNGILPKKLTKMD-DKILVEFSDKT----SELYDTVLYA  314 (542)
T ss_dssp             --TT---------------SCHHHHHHHHHHHHHTTCE--EEETCCEEEEEEET-TEEEEEETTSC----EEEESEEEEC
T ss_pred             --cc---------------cchhHHHHHHHHHHhhcce--eecceEEEEEEecC-CeEEEEEcCCC----eEEEEEEEEc
Confidence              00               0157888899999999998  99999999998876 55666665543    6789999999


Q ss_pred             cCCCCCCccC
Q 013303          162 NGHFSVPRLA  171 (446)
Q Consensus       162 tG~~s~p~~p  171 (446)
                      +|  -+|+..
T Consensus       315 vG--R~Pnt~  322 (542)
T 4b1b_A          315 IG--RKGDID  322 (542)
T ss_dssp             SC--EEESCG
T ss_pred             cc--ccCCcc
Confidence            99  677664

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.45  E-value=9.6e-07  Score=83.35  Aligned_cols=104  Identities=16%  Similarity=0.172  Sum_probs=77.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.                                           
T Consensus       145 ~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-------------------------------------------  181 (320)
T 1trb_A          145 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR-------------------------------------------  181 (320)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC-------------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCccc-------------------------------------------
Confidence            4689999999999999999999999999999864220                                           


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC-C-CceEEEEEcEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-D-DVVEEETFDAVV  159 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~-~~~~~~~~d~VV  159 (446)
                                         ....+.+.+.+.+++.+++  ++++++|.++....+....|++.+. . ++..++.+|.||
T Consensus       182 -------------------~~~~~~~~l~~~l~~~gv~--i~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv  240 (320)
T 1trb_A          182 -------------------AEKILIKRLMDKVENGNII--LHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLF  240 (320)
T ss_dssp             -------------------CCHHHHHHHHHHHHTSSEE--EECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEE
T ss_pred             -------------------cCHHHHHHHHHhcccCCeE--EEcCceeEEEEcCCCceEEEEEEeccCCCceEEEEcCEEE
Confidence                               0135566677777778887  8999999999876422234666652 1 333578999999


Q ss_pred             EccCCCCCCccC
Q 013303          160 VCNGHFSVPRLA  171 (446)
Q Consensus       160 vAtG~~s~p~~p  171 (446)
                      +|+|  ..|+.+
T Consensus       241 ~a~G--~~p~~~  250 (320)
T 1trb_A          241 VAIG--HSPNTA  250 (320)
T ss_dssp             ECSC--EEESCG
T ss_pred             EEeC--CCCChH
Confidence            9999  566543

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=98.45  E-value=6.7e-07  Score=94.39  Aligned_cols=39  Identities=38%  Similarity=0.626  Sum_probs=36.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCce
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS   40 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~   40 (446)
                      .+||+|||||++|+++|..|++.|++|+|+|+.+.+||.
T Consensus       336 ~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ggr  374 (776)
T 4gut_A          336 NKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGR  374 (776)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceece
Confidence            369999999999999999999999999999999989883

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.43  E-value=7e-07  Score=89.89  Aligned_cols=102  Identities=21%  Similarity=0.233  Sum_probs=77.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHH----CCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLR----EGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPREL   77 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~----~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~   77 (446)
                      .++|+|||||+.|+.+|..|++    .|.+|+++++.+.+.                                       
T Consensus       180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~---------------------------------------  220 (493)
T 1m6i_A          180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNM---------------------------------------  220 (493)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTT---------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccc---------------------------------------
Confidence            4789999999999999999987    478899998754210                                       


Q ss_pred             cccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcE
Q 013303           78 MGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA  157 (446)
Q Consensus        78 ~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~  157 (446)
                                        ...++  .++.+++.+..++.|+.  ++++++|.+++..+ +...|++.++.    ++.+|.
T Consensus       221 ------------------~~~l~--~~~~~~~~~~l~~~GV~--v~~~~~V~~i~~~~-~~~~v~l~dG~----~i~aD~  273 (493)
T 1m6i_A          221 ------------------GKILP--EYLSNWTMEKVRREGVK--VMPNAIVQSVGVSS-GKLLIKLKDGR----KVETDH  273 (493)
T ss_dssp             ------------------TTTSC--HHHHHHHHHHHHTTTCE--EECSCCEEEEEEET-TEEEEEETTSC----EEEESE
T ss_pred             ------------------cccCC--HHHHHHHHHHHHhcCCE--EEeCCEEEEEEecC-CeEEEEECCCC----EEECCE
Confidence                              00111  46777888888888988  99999999998654 44556655443    789999


Q ss_pred             EEEccCCCCCCccC
Q 013303          158 VVVCNGHFSVPRLA  171 (446)
Q Consensus       158 VVvAtG~~s~p~~p  171 (446)
                      ||+|+|  ..|+..
T Consensus       274 Vv~a~G--~~pn~~  285 (493)
T 1m6i_A          274 IVAAVG--LEPNVE  285 (493)
T ss_dssp             EEECCC--EEECCT
T ss_pred             EEECCC--CCccHH
Confidence            999999  566643

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.42  E-value=9.3e-07  Score=88.29  Aligned_cols=102  Identities=14%  Similarity=0.216  Sum_probs=79.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+..                                          
T Consensus       170 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~------------------------------------------  207 (463)
T 4dna_A          170 PESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILS------------------------------------------  207 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST------------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc------------------------------------------
Confidence            47899999999999999999999999999998753310                                          


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEE-EEeCCCceEEEEEcEEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVK-SRKKDDVVEEETFDAVVV  160 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~-~~~~~~~~~~~~~d~VVv  160 (446)
                                      .+  ..++.+.+.+.+++.|++  ++++++|.+++..+++...|+ +.++    . +.+|.||+
T Consensus       208 ----------------~~--~~~~~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~~~~~~v~~~~~g----~-i~aD~Vv~  262 (463)
T 4dna_A          208 ----------------RF--DQDMRRGLHAAMEEKGIR--ILCEDIIQSVSADADGRRVATTMKHG----E-IVADQVML  262 (463)
T ss_dssp             ----------------TS--CHHHHHHHHHHHHHTTCE--EECSCCEEEEEECTTSCEEEEESSSC----E-EEESEEEE
T ss_pred             ----------------cc--CHHHHHHHHHHHHHCCCE--EECCCEEEEEEEcCCCEEEEEEcCCC----e-EEeCEEEE
Confidence                            00  157788888889999998  999999999988653445555 4332    2 89999999


Q ss_pred             ccCCCCCCccCC
Q 013303          161 CNGHFSVPRLAQ  172 (446)
Q Consensus       161 AtG~~s~p~~p~  172 (446)
                      |+|  ..|+...
T Consensus       263 a~G--~~p~~~~  272 (463)
T 4dna_A          263 ALG--RMPNTNG  272 (463)
T ss_dssp             CSC--EEESCTT
T ss_pred             eeC--cccCCCC
Confidence            999  5666543

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=98.42  E-value=1.4e-07  Score=94.61  Aligned_cols=43  Identities=37%  Similarity=0.487  Sum_probs=39.4

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCC--cEEEEeeCCCcCceeee
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGEQVGGSWIY   43 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~--~v~v~e~~~~~GG~w~~   43 (446)
                      |++||+|||||++||+||.+|++.|.  +|+|||+++.+||....
T Consensus         1 m~~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~~t   45 (477)
T 3nks_A            1 MGRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRS   45 (477)
T ss_dssp             -CCEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTCCE
T ss_pred             CCceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCceEE
Confidence            67899999999999999999999999  99999999999997654

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.40  E-value=1.8e-06  Score=89.28  Aligned_cols=40  Identities=28%  Similarity=0.454  Sum_probs=36.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCcee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW   41 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w   41 (446)
                      .+||+|||||++|+++|..|++.|++|+|+|+.+..||.+
T Consensus        46 ~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~gg~~   85 (623)
T 3pl8_A           46 KYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLK   85 (623)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSS
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCCCcc
Confidence            3699999999999999999999999999999998888744

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.40  E-value=4.7e-07  Score=87.51  Aligned_cols=93  Identities=26%  Similarity=0.353  Sum_probs=74.3

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d   82 (446)
                      ++|+|||||+.|+.+|..|++.|.+|+++++.+.+..                                           
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------------------  180 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG-------------------------------------------  180 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT-------------------------------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc-------------------------------------------
Confidence            6899999999999999999999999999998764311                                           


Q ss_pred             CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEcc
Q 013303           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN  162 (446)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAt  162 (446)
                                        -..++.+++.+..++.|++  ++++++|.+++  . .  .|++.++    . +.+|.||+|+
T Consensus       181 ------------------~~~~~~~~l~~~l~~~gV~--i~~~~~v~~i~--~-~--~v~~~~g----~-i~~D~vi~a~  230 (367)
T 1xhc_A          181 ------------------LDEELSNMIKDMLEETGVK--FFLNSELLEAN--E-E--GVLTNSG----F-IEGKVKICAI  230 (367)
T ss_dssp             ------------------CCHHHHHHHHHHHHHTTEE--EECSCCEEEEC--S-S--EEEETTE----E-EECSCEEEEC
T ss_pred             ------------------CCHHHHHHHHHHHHHCCCE--EEcCCEEEEEE--e-e--EEEECCC----E-EEcCEEEECc
Confidence                              0157788888889999988  99999999986  2 2  3444322    3 8999999999


Q ss_pred             CCCCCCcc
Q 013303          163 GHFSVPRL  170 (446)
Q Consensus       163 G~~s~p~~  170 (446)
                      |  ..|+.
T Consensus       231 G--~~p~~  236 (367)
T 1xhc_A          231 G--IVPNV  236 (367)
T ss_dssp             C--EEECC
T ss_pred             C--CCcCH
Confidence            9  66664

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.40  E-value=1.4e-06  Score=82.77  Aligned_cols=103  Identities=17%  Similarity=0.176  Sum_probs=77.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||+|..|+.+|..|++.|.+|+++++.+.+.                                           
T Consensus       152 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~-------------------------------------------  188 (335)
T 2zbw_A          152 GKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFR-------------------------------------------  188 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCC-------------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccC-------------------------------------------
Confidence            4689999999999999999999999999999865220                                           


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVV  160 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~VVv  160 (446)
                                         ...+..+.+.+..++.+++  ++++++|.+++..+ +...|++... +++..++.+|.||+
T Consensus       189 -------------------~~~~~~~~l~~~l~~~gv~--v~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~i~~D~vi~  246 (335)
T 2zbw_A          189 -------------------AHEASVKELMKAHEEGRLE--VLTPYELRRVEGDE-RVRWAVVFHNQTQEELALEVDAVLI  246 (335)
T ss_dssp             -------------------SCHHHHHHHHHHHHTTSSE--EETTEEEEEEEESS-SEEEEEEEETTTCCEEEEECSEEEE
T ss_pred             -------------------ccHHHHHHHHhccccCCeE--EecCCcceeEccCC-CeeEEEEEECCCCceEEEecCEEEE
Confidence                               0134556677777777888  99999999998742 3335666643 33345789999999


Q ss_pred             ccCCCCCCccC
Q 013303          161 CNGHFSVPRLA  171 (446)
Q Consensus       161 AtG~~s~p~~p  171 (446)
                      |+|  ..|+.+
T Consensus       247 a~G--~~p~~~  255 (335)
T 2zbw_A          247 LAG--YITKLG  255 (335)
T ss_dssp             CCC--EEEECG
T ss_pred             eec--CCCCch
Confidence            999  566543

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.38  E-value=3.2e-06  Score=85.65  Aligned_cols=106  Identities=14%  Similarity=0.223  Sum_probs=79.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.. +    .                                       
T Consensus       210 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~-~----l---------------------------------------  245 (519)
T 3qfa_A          210 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSI-L----L---------------------------------------  245 (519)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-S----S---------------------------------------
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEeccc-c----c---------------------------------------
Confidence            3579999999999999999999999999999742 1    0                                       


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCC---CceEEEEEeCCC-ceEEEEEcE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES---NKWKVKSRKKDD-VVEEETFDA  157 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~---~~~~v~~~~~~~-~~~~~~~d~  157 (446)
                        +             .+  ..++.+.+.+..++.|+.  ++++++|..|....+   +...+++...++ +..++.+|.
T Consensus       246 --~-------------~~--d~~~~~~~~~~l~~~GV~--v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~  306 (519)
T 3qfa_A          246 --R-------------GF--DQDMANKIGEHMEEHGIK--FIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNT  306 (519)
T ss_dssp             --T-------------TS--CHHHHHHHHHHHHHTTCE--EEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESE
T ss_pred             --c-------------cC--CHHHHHHHHHHHHHCCCE--EEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCE
Confidence              0             00  157788888888899998  999998888876542   345566555443 335678999


Q ss_pred             EEEccCCCCCCccCC
Q 013303          158 VVVCNGHFSVPRLAQ  172 (446)
Q Consensus       158 VVvAtG~~s~p~~p~  172 (446)
                      ||+|+|  ..|+...
T Consensus       307 vi~a~G--~~p~~~~  319 (519)
T 3qfa_A          307 VMLAIG--RDACTRK  319 (519)
T ss_dssp             EEECSC--EEESCSS
T ss_pred             EEEecC--CcccCCC
Confidence            999999  6676543

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.38  E-value=1.4e-06  Score=86.96  Aligned_cols=104  Identities=16%  Similarity=0.298  Sum_probs=74.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+...                                         
T Consensus       172 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------------  210 (466)
T 3l8k_A          172 PQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALIT-----------------------------------------  210 (466)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-----------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCC-----------------------------------------
Confidence            468999999999999999999999999999987633100                                         


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                       + ...++.+.+.+..+   ++  ++++++|.+++..+++...|.+.+.+++..++.+|.||+|
T Consensus       211 -----------------~-~d~~~~~~l~~~l~---v~--i~~~~~v~~i~~~~~~~v~v~~~~~~G~~~~i~~D~vi~a  267 (466)
T 3l8k_A          211 -----------------L-EDQDIVNTLLSILK---LN--IKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLA  267 (466)
T ss_dssp             -----------------S-CCHHHHHHHHHHHC---CC--EECSCCEEEEEEEETTEEEEEECCTTSCCEEEEESCEEEC
T ss_pred             -----------------C-CCHHHHHHHHhcCE---EE--EEECCEEEEEEEcCCCcEEEEEEecCCceEEEEcCEEEEC
Confidence                             0 01455555555443   55  8999999999875423455665531333457899999999


Q ss_pred             cCCCCCCccC
Q 013303          162 NGHFSVPRLA  171 (446)
Q Consensus       162 tG~~s~p~~p  171 (446)
                      +|  ..|+..
T Consensus       268 ~G--~~p~~~  275 (466)
T 3l8k_A          268 AG--RRPVIP  275 (466)
T ss_dssp             CC--EEECCC
T ss_pred             cC--CCcccc
Confidence            99  667665

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=98.37  E-value=8.7e-07  Score=91.92  Aligned_cols=68  Identities=13%  Similarity=-0.001  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHHh--CCCCcEEeCeEEEEEEEcCC--Cce-EEEEEe-CCCceEEEEEcEEEEccCCCCCCccC
Q 013303          102 HEEVLRYLQNFAREF--GVDQVVRLHTEVLNARLVES--NKW-KVKSRK-KDDVVEEETFDAVVVCNGHFSVPRLA  171 (446)
Q Consensus       102 ~~~v~~yl~~~~~~~--~l~~~i~~~~~V~~v~~~~~--~~~-~v~~~~-~~~~~~~~~~d~VVvAtG~~s~p~~p  171 (446)
                      +..+...|.+.+++.  ++.  +..++.|+.+...++  +.. -|...+ .+++...+.++.||+|||.++.-..|
T Consensus       165 G~~i~~~L~~~a~~~~~gV~--i~~~~~v~dLi~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLATGG~g~~y~~  238 (662)
T 3gyx_A          165 GESYKVIVAEAAKNALGQDR--IIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKANAMVVACGGAVNVYRP  238 (662)
T ss_dssp             ETSHHHHHHHHHHHHHCTTT--EECSEEECCCEECSSSTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCSSSCC
T ss_pred             HHHHHHHHHHHHHhcCCCcE--EEEceEEEEEEEeCCccceEEEEEEEEcCCCcEEEEEeCEEEECCCcccccccC
Confidence            457778888888887  888  999999999877652  132 233333 23455678999999999987654333

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.37  E-value=6.6e-07  Score=88.61  Aligned_cols=97  Identities=16%  Similarity=0.236  Sum_probs=75.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++|+.+.+...+                                        
T Consensus       147 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~~----------------------------------------  186 (437)
T 4eqs_A          147 VDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLM----------------------------------------  186 (437)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTTS----------------------------------------
T ss_pred             CcEEEEECCccchhhhHHHHHhcCCcceeeeeeccccccc----------------------------------------
Confidence            4689999999999999999999999999999976431100                                        


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                          ..++.+.+.+..++.++.  ++++++|.+++.     ..+++.++.    ++.+|.|++|
T Consensus       187 --------------------d~~~~~~~~~~l~~~gV~--i~~~~~v~~~~~-----~~v~~~~g~----~~~~D~vl~a  235 (437)
T 4eqs_A          187 --------------------DADMNQPILDELDKREIP--YRLNEEINAING-----NEITFKSGK----VEHYDMIIEG  235 (437)
T ss_dssp             --------------------CGGGGHHHHHHHHHTTCC--EEESCCEEEEET-----TEEEETTSC----EEECSEEEEC
T ss_pred             --------------------cchhHHHHHHHhhccceE--EEeccEEEEecC-----CeeeecCCe----EEeeeeEEEE
Confidence                                024556778888888998  999999998863     235555543    7899999999


Q ss_pred             cCCCCCCccC
Q 013303          162 NGHFSVPRLA  171 (446)
Q Consensus       162 tG~~s~p~~p  171 (446)
                      +|  ..|+..
T Consensus       236 ~G--~~Pn~~  243 (437)
T 4eqs_A          236 VG--THPNSK  243 (437)
T ss_dssp             CC--EEESCG
T ss_pred             ec--eecCcH
Confidence            99  666643

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=98.37  E-value=2.5e-07  Score=91.24  Aligned_cols=42  Identities=38%  Similarity=0.621  Sum_probs=39.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCC-CcEEEEeeCCCcCceeee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGSWIY   43 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g-~~v~v~e~~~~~GG~w~~   43 (446)
                      .+||+|||||++||+||..|++.| ++|+|||+++.+||.+..
T Consensus         6 ~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t   48 (424)
T 2b9w_A            6 DSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHS   48 (424)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcccc
Confidence            479999999999999999999999 899999999999997764

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=98.36  E-value=1.7e-07  Score=94.95  Aligned_cols=41  Identities=37%  Similarity=0.612  Sum_probs=38.4

Q ss_pred             CeEEEECcChHHHHHHHHHHHCC-CcEEEEeeCCCcCceeee
Q 013303            3 RHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGSWIY   43 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g-~~v~v~e~~~~~GG~w~~   43 (446)
                      +||+|||||++||+||..|++.| ++|+|||+++++||.+..
T Consensus         9 ~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~~t   50 (516)
T 1rsg_A            9 KKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQT   50 (516)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTCCE
T ss_pred             CcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCceee
Confidence            68999999999999999999999 999999999999997644

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=98.35  E-value=2.6e-07  Score=91.07  Aligned_cols=40  Identities=40%  Similarity=0.756  Sum_probs=37.5

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceee
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI   42 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~   42 (446)
                      +||+|||||++||+||..|++.|++|+|||+++.+||...
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~   40 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFT   40 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCceeE
Confidence            5899999999999999999999999999999999998654

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=98.34  E-value=4.3e-06  Score=86.28  Aligned_cols=105  Identities=22%  Similarity=0.279  Sum_probs=76.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++++. .+    .                                       
T Consensus       286 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~----l---------------------------------------  321 (598)
T 2x8g_A          286 PGKTLVIGASYVALECAGFLASLGGDVTVMVRS-IL----L---------------------------------------  321 (598)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CS----S---------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC-cC----c---------------------------------------
Confidence            368999999999999999999999999999985 11    0                                       


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEc-----CC---CceEEEEEeCCCceEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV-----ES---NKWKVKSRKKDDVVEEE  153 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~-----~~---~~~~v~~~~~~~~~~~~  153 (446)
                                     +.+  ..++.+++.+..++.|+.  +++++.+.+|...     .+   +...+.....+++...+
T Consensus       322 ---------------~~~--d~~~~~~~~~~l~~~gv~--i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~  382 (598)
T 2x8g_A          322 ---------------RGF--DQQMAEKVGDYMENHGVK--FAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEE  382 (598)
T ss_dssp             ---------------TTS--CHHHHHHHHHHHHHTTCE--EEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEE
T ss_pred             ---------------CcC--CHHHHHHHHHHHHhCCCE--EEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEec
Confidence                           000  146777888888888988  9999988888653     21   34555544334444455


Q ss_pred             EEcEEEEccCCCCCCccC
Q 013303          154 TFDAVVVCNGHFSVPRLA  171 (446)
Q Consensus       154 ~~d~VVvAtG~~s~p~~p  171 (446)
                      .+|.||+|+|  ..|+..
T Consensus       383 ~~D~vi~a~G--~~p~~~  398 (598)
T 2x8g_A          383 EFETVIFAVG--REPQLS  398 (598)
T ss_dssp             EESEEEECSC--EEECGG
T ss_pred             cCCEEEEEeC--CccccC
Confidence            6999999999  666653

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=98.34  E-value=3.3e-07  Score=89.05  Aligned_cols=42  Identities=26%  Similarity=0.441  Sum_probs=39.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~   43 (446)
                      .+||+|||||++||++|..|++.|.+|+|+|+++.+||.|..
T Consensus        29 ~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~~   70 (397)
T 3hdq_A           29 GFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYD   70 (397)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGCC
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCccce
Confidence            469999999999999999999999999999999999998874

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.33  E-value=3.1e-07  Score=91.43  Aligned_cols=41  Identities=24%  Similarity=0.383  Sum_probs=39.0

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~   43 (446)
                      +||+|||||++||+||..|++.|++|+|+|+++.+||.+..
T Consensus        12 ~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   52 (453)
T 2bcg_G           12 YDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAAS   52 (453)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCccccc
Confidence            68999999999999999999999999999999999998764

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.32  E-value=1.7e-06  Score=89.13  Aligned_cols=98  Identities=21%  Similarity=0.255  Sum_probs=77.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++++.+.+...                                         
T Consensus       187 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------------  225 (588)
T 3ics_A          187 PRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPP-----------------------------------------  225 (588)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-----------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccccc-----------------------------------------
Confidence            478999999999999999999999999999986533100                                         


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                         -..++.+.+.+..++.|+.  ++++++|.+++... +  .|++.++.    ++.+|.||+|
T Consensus       226 -------------------~~~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~-~--~v~~~~g~----~i~~D~Vi~a  277 (588)
T 3ics_A          226 -------------------IDYEMAAYVHEHMKNHDVE--LVFEDGVDALEENG-A--VVRLKSGS----VIQTDMLILA  277 (588)
T ss_dssp             -------------------SCHHHHHHHHHHHHHTTCE--EECSCCEEEEEGGG-T--EEEETTSC----EEECSEEEEC
T ss_pred             -------------------CCHHHHHHHHHHHHHcCCE--EEECCeEEEEecCC-C--EEEECCCC----EEEcCEEEEc
Confidence                               0156778888888889998  99999999998654 2  45554443    7899999999


Q ss_pred             cCCCCCCcc
Q 013303          162 NGHFSVPRL  170 (446)
Q Consensus       162 tG~~s~p~~  170 (446)
                      +|  ..|+.
T Consensus       278 ~G--~~p~~  284 (588)
T 3ics_A          278 IG--VQPES  284 (588)
T ss_dssp             SC--EEECC
T ss_pred             cC--CCCCh
Confidence            99  56654

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.31  E-value=2e-06  Score=82.76  Aligned_cols=103  Identities=20%  Similarity=0.261  Sum_probs=75.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||+|+.|+.+|..|++.|.+|+++++.+.+..                                          
T Consensus       163 ~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~------------------------------------------  200 (360)
T 3ab1_A          163 GKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQG------------------------------------------  200 (360)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSS------------------------------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCC------------------------------------------
Confidence            46899999999999999999999999999998653200                                          


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCc-eEEEEEeCCCceEEEEEcEEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRKKDDVVEEETFDAVVV  160 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~~~~~~~~~~~d~VVv  160 (446)
                                          ...+.+.+.+..++.++.  ++++++|.++...+ +. ..|++...+++..++.+|.||+
T Consensus       201 --------------------~~~~~~~l~~~~~~~gv~--i~~~~~v~~i~~~~-~~v~~v~~~~~~g~~~~i~~D~vi~  257 (360)
T 3ab1_A          201 --------------------HGKTAHEVERARANGTID--VYLETEVASIEESN-GVLTRVHLRSSDGSKWTVEADRLLI  257 (360)
T ss_dssp             --------------------CSHHHHSSHHHHHHTSEE--EESSEEEEEEEEET-TEEEEEEEEETTCCEEEEECSEEEE
T ss_pred             --------------------CHHHHHHHHHHhhcCceE--EEcCcCHHHhccCC-CceEEEEEEecCCCeEEEeCCEEEE
Confidence                                012344556666677777  89999999998764 33 2455553334446789999999


Q ss_pred             ccCCCCCCccC
Q 013303          161 CNGHFSVPRLA  171 (446)
Q Consensus       161 AtG~~s~p~~p  171 (446)
                      |+|  ..|+.+
T Consensus       258 a~G--~~p~~~  266 (360)
T 3ab1_A          258 LIG--FKSNLG  266 (360)
T ss_dssp             CCC--BCCSCG
T ss_pred             CCC--CCCCHH
Confidence            999  566543

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=98.31  E-value=3.9e-07  Score=78.49  Aligned_cols=131  Identities=18%  Similarity=0.214  Sum_probs=95.5

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecCCcc-------------------cc-----ccCCCC-CCeeeccceeEE
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVADE-------------------TH-----EKQPGY-DNMWLHSMVERA  253 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~~-------------------~~-----~~~~~~-~~v~~~~~v~~i  253 (446)
                      +|+|||+|++|+++|..|++.+.+|+++.+.+..-                   .+     +.+.+. .++... .|.++
T Consensus         3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i   81 (180)
T 2ywl_A            3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPG-VVKGV   81 (180)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEE
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEE
Confidence            79999999999999999999999999999875300                   00     000111 134455 77787


Q ss_pred             ccCC---cEEecCCcEEeecEEEEecCccCCCC-C----CCCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCccC-
Q 013303          254 NEDG---TVVFRNGRVVSADVIMHCTGYKYNYP-F----LETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI-  324 (446)
Q Consensus       254 ~~~~---~v~~~dG~~~~~D~vi~atG~~~~~~-~----l~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~-  324 (446)
                      ..++   .+.+++| ++++|.||+|+|..|+.. .    ++ .|.+.+|+..+          ++.|+||++|++.... 
T Consensus        82 ~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~~~~~~~g~~~~-~g~i~vd~~~~----------t~~~~i~a~GD~~~~~~  149 (180)
T 2ywl_A           82 RDMGGVFEVETEEG-VEKAERLLLCTHKDPTLPSLLGLTRR-GAYIDTDEGGR----------TSYPRVYAAGVARGKVP  149 (180)
T ss_dssp             EECSSSEEEECSSC-EEEEEEEEECCTTCCHHHHHHTCCEE-TTEECCCTTCB----------CSSTTEEECGGGGTCCS
T ss_pred             EEcCCEEEEEECCC-EEEECEEEECCCCCCCccccCCCCcc-CceEEeCCCCC----------cCCCCEEEeecccCcch
Confidence            6533   2667788 899999999999998531 1    23 56677777665          5589999999886543 


Q ss_pred             -chhHHHHHHHHHHHHHcC
Q 013303          325 -PFPFFELQSKWIASVLSG  342 (446)
Q Consensus       325 -~~~~~~~qa~~~a~~l~g  342 (446)
                       ..+.+..||+.+|.++.+
T Consensus       150 ~~~~~A~~~g~~aa~~i~~  168 (180)
T 2ywl_A          150 GHAIISAGDGAYVAVHLVS  168 (180)
T ss_dssp             CCHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHhHHHHHHHHHH
Confidence             556788899999998864

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=98.30  E-value=4e-07  Score=89.13  Aligned_cols=43  Identities=23%  Similarity=0.410  Sum_probs=39.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHC-CCcEEEEeeCCCcCceeeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQVGGSWIYT   44 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~-g~~v~v~e~~~~~GG~w~~~   44 (446)
                      .+||+|||||++||++|..|++. |++|+|||+++.+||.+...
T Consensus         7 ~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~~   50 (399)
T 1v0j_A            7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSE   50 (399)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeec
Confidence            47999999999999999999999 99999999999999988653

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=98.29  E-value=4.1e-07  Score=92.29  Aligned_cols=42  Identities=33%  Similarity=0.484  Sum_probs=38.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~   43 (446)
                      ++||+|||||++||+||..|++.|++|+|+|+++.+||....
T Consensus         4 ~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t   45 (520)
T 1s3e_A            4 KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYT   45 (520)
T ss_dssp             BCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCE
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceee
Confidence            478999999999999999999999999999999999997643

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.28  E-value=2.2e-06  Score=82.55  Aligned_cols=107  Identities=12%  Similarity=0.164  Sum_probs=73.3

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d   82 (446)
                      ++|+|||+|++|+.+|..|++.|.+|+++++.+.+.... .                                       
T Consensus       167 ~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~-~---------------------------------------  206 (369)
T 3d1c_A          167 GQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPD-A---------------------------------------  206 (369)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECC-------------------------------------------------
T ss_pred             CEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCC-C---------------------------------------
Confidence            589999999999999999999999999999875331000 0                                       


Q ss_pred             CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-CCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~-l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                   .+.+.-...+.+.+.+..++.+ +.  ++++++|.+++..+ +...|++.++.   ....+|.||+|
T Consensus       207 -------------d~~~~~~~~~~~~l~~~l~~~g~v~--~~~~~~v~~i~~~~-~~~~v~~~~g~---~~~~~d~vi~a  267 (369)
T 3d1c_A          207 -------------DPSVRLSPYTRQRLGNVIKQGARIE--MNVHYTVKDIDFNN-GQYHISFDSGQ---SVHTPHEPILA  267 (369)
T ss_dssp             --------------CTTSCCHHHHHHHHHHHHTTCCEE--EECSCCEEEEEEET-TEEEEEESSSC---CEEESSCCEEC
T ss_pred             -------------CCCccCCHHHHHHHHHHHhhCCcEE--EecCcEEEEEEecC-CceEEEecCCe---EeccCCceEEe
Confidence                         0000011455677777777775 77  88899999997654 55667665543   12345999999


Q ss_pred             cCCCCCCcc
Q 013303          162 NGHFSVPRL  170 (446)
Q Consensus       162 tG~~s~p~~  170 (446)
                      ||  ..|+.
T Consensus       268 ~G--~~~~~  274 (369)
T 3d1c_A          268 TG--FDATK  274 (369)
T ss_dssp             CC--BCGGG
T ss_pred             ec--cCCcc
Confidence            99  66665

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=98.28  E-value=5e-07  Score=90.86  Aligned_cols=41  Identities=37%  Similarity=0.522  Sum_probs=38.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI   42 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~   42 (446)
                      .+||+|||||++||+||..|++.|++|+|||+.+.+||.+.
T Consensus        11 ~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~   51 (489)
T 2jae_A           11 SHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVW   51 (489)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCcee
Confidence            47999999999999999999999999999999999999643

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.27  E-value=7.8e-07  Score=87.02  Aligned_cols=89  Identities=13%  Similarity=0.097  Sum_probs=64.4

Q ss_pred             CCCEEEEEecCCcHHHHHHHHhccC--CEEEEEEecCCc----------------ccc----ccCCCCCCeeeccceeEE
Q 013303          196 QDQVVILIGHYASGLDIKRDLAGFA--KEVHIASRSVAD----------------ETH----EKQPGYDNMWLHSMVERA  253 (446)
Q Consensus       196 ~~k~VvVVG~G~sg~eia~~l~~~~--~~V~l~~r~~~~----------------~~~----~~~~~~~~v~~~~~v~~i  253 (446)
                      .||+|+|||+|+.|+-+|..|++.+  .+|+++.+++.-                +.+    ..+.+.+--++...+..|
T Consensus         1 aGKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~gv~~i~~~v~~i   80 (401)
T 3vrd_B            1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQVVHDSALGI   80 (401)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTTCEEECSCEEEE
T ss_pred             CcCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCCCEEEEeEEEEE
Confidence            4899999999999999999998765  489999876530                000    011111212345678888


Q ss_pred             ccCCc-EEecCCcEEeecEEEEecCccCCCCC
Q 013303          254 NEDGT-VVFRNGRVVSADVIMHCTGYKYNYPF  284 (446)
Q Consensus       254 ~~~~~-v~~~dG~~~~~D~vi~atG~~~~~~~  284 (446)
                      +.+.+ |.+.+|.++.+|.+|+|||.+++.+-
T Consensus        81 d~~~~~v~~~~g~~i~yd~LviAtG~~~~~~~  112 (401)
T 3vrd_B           81 DPDKKLVKTAGGAEFAYDRCVVAPGIDLLYDK  112 (401)
T ss_dssp             ETTTTEEEETTSCEEECSEEEECCCEEECGGG
T ss_pred             EccCcEEEecccceeecceeeeccCCccccCC
Confidence            76544 88899999999999999999887543

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.24  E-value=1.6e-06  Score=87.41  Aligned_cols=100  Identities=19%  Similarity=0.284  Sum_probs=74.9

Q ss_pred             CeEEEECcChHHHHHHHHHHHC--------------CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCc
Q 013303            3 RHVAVIGAGAAGLVVGHELLRE--------------GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKS   68 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~--------------g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~   68 (446)
                      ..++|||||+.|+.+|..|++.              ..+|+++|..+.+.                              
T Consensus       218 ~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il------------------------------  267 (502)
T 4g6h_A          218 LSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVL------------------------------  267 (502)
T ss_dssp             TEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSS------------------------------
T ss_pred             cceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccc------------------------------
Confidence            3699999999999999988753              36899999976441                              


Q ss_pred             eeecCCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCC
Q 013303           69 LRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDD  148 (446)
Q Consensus        69 l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~  148 (446)
                                                  +.|  .+++.+++.+..++.|++  ++++++|++|+..   ...+.....++
T Consensus       268 ----------------------------~~~--~~~~~~~~~~~L~~~GV~--v~~~~~v~~v~~~---~~~~~~~~~dg  312 (502)
T 4g6h_A          268 ----------------------------NMF--EKKLSSYAQSHLENTSIK--VHLRTAVAKVEEK---QLLAKTKHEDG  312 (502)
T ss_dssp             ----------------------------TTS--CHHHHHHHHHHHHHTTCE--EETTEEEEEECSS---EEEEEEECTTS
T ss_pred             ----------------------------cCC--CHHHHHHHHHHHHhccee--eecCceEEEEeCC---ceEEEEEecCc
Confidence                                        111  167889999999999998  9999999999743   34444443333


Q ss_pred             --ceEEEEEcEEEEccCCCCCCc
Q 013303          149 --VVEEETFDAVVVCNGHFSVPR  169 (446)
Q Consensus       149 --~~~~~~~d~VVvAtG~~s~p~  169 (446)
                        ..+++.+|.||.|+|  ..|+
T Consensus       313 ~~~~~~i~ad~viwa~G--v~~~  333 (502)
T 4g6h_A          313 KITEETIPYGTLIWATG--NKAR  333 (502)
T ss_dssp             CEEEEEEECSEEEECCC--EECC
T ss_pred             ccceeeeccCEEEEccC--CcCC
Confidence              345799999999999  4544

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.24  E-value=2.6e-06  Score=84.66  Aligned_cols=98  Identities=21%  Similarity=0.370  Sum_probs=72.6

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d   82 (446)
                      ++|+|||||+.|+.+|..|++.|.+|+++++.+.+...                                          
T Consensus       149 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------------------  186 (449)
T 3kd9_A          149 ENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRR------------------------------------------  186 (449)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT------------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchh------------------------------------------
Confidence            68999999999999999999999999999997633100                                          


Q ss_pred             CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEcc
Q 013303           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN  162 (446)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAt  162 (446)
                                     .+  ..++.+.+.+..++. +.  +++++.|.+++...  .......++    .++.+|.||+|+
T Consensus       187 ---------------~~--~~~~~~~l~~~l~~~-v~--i~~~~~v~~i~~~~--~v~~v~~~g----~~i~~D~Vv~a~  240 (449)
T 3kd9_A          187 ---------------SF--DKEVTDILEEKLKKH-VN--LRLQEITMKIEGEE--RVEKVVTDA----GEYKAELVILAT  240 (449)
T ss_dssp             ---------------TS--CHHHHHHHHHHHTTT-SE--EEESCCEEEEECSS--SCCEEEETT----EEEECSEEEECS
T ss_pred             ---------------hc--CHHHHHHHHHHHHhC-cE--EEeCCeEEEEeccC--cEEEEEeCC----CEEECCEEEEee
Confidence                           00  146777777777766 66  88999999997543  222222232    378999999999


Q ss_pred             CCCCCCcc
Q 013303          163 GHFSVPRL  170 (446)
Q Consensus       163 G~~s~p~~  170 (446)
                      |  ..|+.
T Consensus       241 G--~~p~~  246 (449)
T 3kd9_A          241 G--IKPNI  246 (449)
T ss_dssp             C--EEECC
T ss_pred             C--CccCH
Confidence            9  56654

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=98.23  E-value=5.4e-07  Score=89.66  Aligned_cols=41  Identities=39%  Similarity=0.631  Sum_probs=38.5

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~   43 (446)
                      +||+|||||++||+||..|++.|++|+|||+++.+||.+..
T Consensus         6 ~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~   46 (453)
T 2yg5_A            6 RDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWT   46 (453)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCCE
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCceec
Confidence            69999999999999999999999999999999999998753

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.22  E-value=7.8e-06  Score=76.70  Aligned_cols=98  Identities=21%  Similarity=0.261  Sum_probs=71.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||+|++|+.+|..|++.|.+|+++++.+.+    ..                                      
T Consensus       144 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~----~~--------------------------------------  181 (310)
T 1fl2_A          144 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEM----KA--------------------------------------  181 (310)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSC----CS--------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCccc----Cc--------------------------------------
Confidence            368999999999999999999999999999986532    00                                      


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCCCcEEeCeEEEEEEEcCCCce-EEEEEeC-CCceEEEEEcEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKW-KVKSRKK-DDVVEEETFDAV  158 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~-~~l~~~i~~~~~V~~v~~~~~~~~-~v~~~~~-~~~~~~~~~d~V  158 (446)
                                          ...    +.+.+.+ .++.  ++++++|.++...+ +.. .|.+.+. .++..++.+|.|
T Consensus       182 --------------------~~~----~~~~l~~~~gv~--v~~~~~v~~i~~~~-~~v~~v~~~~~~~g~~~~i~~D~v  234 (310)
T 1fl2_A          182 --------------------DQV----LQDKLRSLKNVD--IILNAQTTEVKGDG-SKVVGLEYRDRVSGDIHNIELAGI  234 (310)
T ss_dssp             --------------------CHH----HHHHHHTCTTEE--EESSEEEEEEEESS-SSEEEEEEEETTTCCEEEEECSEE
T ss_pred             --------------------cHH----HHHHHhhCCCeE--EecCCceEEEEcCC-CcEEEEEEEECCCCcEEEEEcCEE
Confidence                                012    2233333 4666  88999999998754 433 5666653 244567899999


Q ss_pred             EEccCCCCCCcc
Q 013303          159 VVCNGHFSVPRL  170 (446)
Q Consensus       159 VvAtG~~s~p~~  170 (446)
                      |+|+|  ..|+.
T Consensus       235 i~a~G--~~p~~  244 (310)
T 1fl2_A          235 FVQIG--LLPNT  244 (310)
T ss_dssp             EECSC--EEESC
T ss_pred             EEeeC--CccCc
Confidence            99999  56654

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=98.21  E-value=8.9e-07  Score=86.10  Aligned_cols=42  Identities=29%  Similarity=0.652  Sum_probs=39.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~   43 (446)
                      .+||+|||||++|+++|..|++.|++|+|||+++.+||.|..
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~   44 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYD   44 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCE
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCcccc
Confidence            469999999999999999999999999999999999998865

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=98.21  E-value=8.2e-07  Score=89.63  Aligned_cols=42  Identities=38%  Similarity=0.555  Sum_probs=39.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~   43 (446)
                      .+||+|||||++||++|..|++.|++|+|+|+++.+||.+..
T Consensus        13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~   54 (504)
T 1sez_A           13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRS   54 (504)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceee
Confidence            479999999999999999999999999999999999997654

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.20  E-value=7.4e-06  Score=77.70  Aligned_cols=101  Identities=13%  Similarity=0.160  Sum_probs=72.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||+|+.|+.+|..|++.|.+|+++++.+.+..                                          
T Consensus       173 ~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~------------------------------------------  210 (338)
T 3itj_A          173 NKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA------------------------------------------  210 (338)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS------------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC------------------------------------------
Confidence            46899999999999999999999999999998653200                                          


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVV  160 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~VVv  160 (446)
                                          ...   ++....+..|+.  ++++++|.++....+....|++.+. .++..++.+|.||+
T Consensus       211 --------------------~~~---~~~~l~~~~gv~--i~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~  265 (338)
T 3itj_A          211 --------------------STI---MQKRAEKNEKIE--ILYNTVALEAKGDGKLLNALRIKNTKKNEETDLPVSGLFY  265 (338)
T ss_dssp             --------------------CHH---HHHHHHHCTTEE--EECSEEEEEEEESSSSEEEEEEEETTTTEEEEEECSEEEE
T ss_pred             --------------------CHH---HHHHHHhcCCeE--EeecceeEEEEcccCcEEEEEEEECCCCceEEEEeCEEEE
Confidence                                012   222222334777  8899999999876522344777763 23446799999999


Q ss_pred             ccCCCCCCccC
Q 013303          161 CNGHFSVPRLA  171 (446)
Q Consensus       161 AtG~~s~p~~p  171 (446)
                      |+|  ..|+..
T Consensus       266 a~G--~~p~~~  274 (338)
T 3itj_A          266 AIG--HTPATK  274 (338)
T ss_dssp             CSC--EEECCG
T ss_pred             EeC--CCCChh
Confidence            999  555543

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=98.20  E-value=7.8e-07  Score=85.97  Aligned_cols=42  Identities=29%  Similarity=0.470  Sum_probs=39.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~   43 (446)
                      ++||+|||||++|+++|..|++.|++|+|+|+++.+||.+..
T Consensus         1 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~   42 (367)
T 1i8t_A            1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYT   42 (367)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCE
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcceEe
Confidence            369999999999999999999999999999999999998754

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=98.19  E-value=8.9e-07  Score=88.69  Aligned_cols=41  Identities=37%  Similarity=0.568  Sum_probs=37.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI   42 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~   42 (446)
                      .+||+|||||++||+||..|++.|++|+|+|+++.+||...
T Consensus        16 ~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~   56 (478)
T 2ivd_A           16 GMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVG   56 (478)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceee
Confidence            47999999999999999999999999999999999998654

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=98.19  E-value=1.1e-06  Score=88.21  Aligned_cols=42  Identities=29%  Similarity=0.392  Sum_probs=39.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCC-CcEEEEeeCCCcCceeee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGSWIY   43 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g-~~v~v~e~~~~~GG~w~~   43 (446)
                      .+||+|||||++||++|..|++.| .+|+|||+++.+||.|..
T Consensus         9 ~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~   51 (484)
T 4dsg_A            9 TPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRS   51 (484)
T ss_dssp             SCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeee
Confidence            469999999999999999999998 799999999999999875

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.18  E-value=4e-06  Score=79.36  Aligned_cols=100  Identities=23%  Similarity=0.201  Sum_probs=70.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.    .                                      
T Consensus       152 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~----~--------------------------------------  189 (325)
T 2q7v_A          152 GKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLR----A--------------------------------------  189 (325)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCC----S--------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCC----c--------------------------------------
Confidence            3689999999999999999999999999999864220    0                                      


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVV  160 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~VVv  160 (446)
                                          ...+   .....++.++.  ++++++|.++...+ ....|.+.+. +++..++.+|.||+
T Consensus       190 --------------------~~~~---~~~l~~~~gv~--i~~~~~v~~i~~~~-~v~~v~~~~~~~g~~~~i~~D~vi~  243 (325)
T 2q7v_A          190 --------------------NKVA---QARAFANPKMK--FIWDTAVEEIQGAD-SVSGVKLRNLKTGEVSELATDGVFI  243 (325)
T ss_dssp             --------------------CHHH---HHHHHTCTTEE--EECSEEEEEEEESS-SEEEEEEEETTTCCEEEEECSEEEE
T ss_pred             --------------------chHH---HHHHHhcCCce--EecCCceEEEccCC-cEEEEEEEECCCCcEEEEEcCEEEE
Confidence                                0122   22222334666  88899999998642 3335666642 33445789999999


Q ss_pred             ccCCCCCCccC
Q 013303          161 CNGHFSVPRLA  171 (446)
Q Consensus       161 AtG~~s~p~~p  171 (446)
                      |+|  ..|+.+
T Consensus       244 a~G--~~p~~~  252 (325)
T 2q7v_A          244 FIG--HVPNTA  252 (325)
T ss_dssp             CSC--EEESCG
T ss_pred             ccC--CCCChH
Confidence            999  566643

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.17  E-value=4.3e-06  Score=78.52  Aligned_cols=101  Identities=13%  Similarity=0.049  Sum_probs=70.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.    .                                      
T Consensus       143 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~----~--------------------------------------  180 (311)
T 2q0l_A          143 NKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFR----C--------------------------------------  180 (311)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCC----S--------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccC----C--------------------------------------
Confidence            4789999999999999999999999999999865220    0                                      


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVV  160 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~VVv  160 (446)
                                          ..++.+   ...++.+++  ++++++|.++...++....|.+... +++..++.+|.||+
T Consensus       181 --------------------~~~~~~---~l~~~~gv~--v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~  235 (311)
T 2q0l_A          181 --------------------APITLE---HAKNNDKIE--FLTPYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFI  235 (311)
T ss_dssp             --------------------CHHHHH---HHHTCTTEE--EETTEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEE
T ss_pred             --------------------CHHHHH---HHhhCCCeE--EEeCCEEEEEECCCCcEeEEEEEecCCCceEEEecCEEEE
Confidence                                012222   222235666  8889999999876412235666642 23445789999999


Q ss_pred             ccCCCCCCccC
Q 013303          161 CNGHFSVPRLA  171 (446)
Q Consensus       161 AtG~~s~p~~p  171 (446)
                      |+|  ..|+.+
T Consensus       236 a~G--~~p~~~  244 (311)
T 2q0l_A          236 FVG--YDVNNA  244 (311)
T ss_dssp             CSC--EEECCG
T ss_pred             Eec--CccChh
Confidence            999  566644

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=98.16  E-value=1.1e-06  Score=88.07  Aligned_cols=42  Identities=24%  Similarity=0.415  Sum_probs=38.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCC--CcEEEEeeCCCcCceeee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIY   43 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g--~~v~v~e~~~~~GG~w~~   43 (446)
                      ++||+|||||++||++|..|++.|  ++|+|+|+++.+||.+..
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~~   47 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVAT   47 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCCE
T ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeEE
Confidence            479999999999999999999999  999999999999987554

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.16  E-value=5e-06  Score=78.87  Aligned_cols=101  Identities=17%  Similarity=0.186  Sum_probs=71.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||+|..|+.+|..|++.|.+|+++++.+.+.                                           
T Consensus       159 ~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~-------------------------------------------  195 (333)
T 1vdc_A          159 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFR-------------------------------------------  195 (333)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCC-------------------------------------------
T ss_pred             CCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCC-------------------------------------------
Confidence            4689999999999999999999999999999865220                                           


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCC-ce-EEEEEeC-CCceEEEEEcEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN-KW-KVKSRKK-DDVVEEETFDAV  158 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~-~~-~v~~~~~-~~~~~~~~~d~V  158 (446)
                                    .     .+.+   ..+..++.+++  ++++++|.++....++ .. .|.+.+. +++..++.+|.|
T Consensus       196 --------------~-----~~~~---~~~~~~~~gv~--i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~v  251 (333)
T 1vdc_A          196 --------------A-----SKIM---QQRALSNPKID--VIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGL  251 (333)
T ss_dssp             --------------S-----CHHH---HHHHHTCTTEE--EECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEE
T ss_pred             --------------c-----cHHH---HHHHHhCCCee--EecCCceEEEeCCCCccceeeEEEEecCCCceEEEecCEE
Confidence                          0     0111   12333456776  8889999999875421 32 3666653 334467999999


Q ss_pred             EEccCCCCCCccC
Q 013303          159 VVCNGHFSVPRLA  171 (446)
Q Consensus       159 VvAtG~~s~p~~p  171 (446)
                      |+|+|  ..|+.+
T Consensus       252 i~a~G--~~p~~~  262 (333)
T 1vdc_A          252 FFAIG--HEPATK  262 (333)
T ss_dssp             EECSC--EEESCG
T ss_pred             EEEeC--CccchH
Confidence            99999  566654

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=98.15  E-value=1.3e-06  Score=87.94  Aligned_cols=40  Identities=30%  Similarity=0.518  Sum_probs=37.8

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceee
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI   42 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~   42 (446)
                      +||+|||||++||+||..|++.|++|+|+|+++.+||...
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~   79 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSW   79 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcce
Confidence            6999999999999999999999999999999999998654

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.15  E-value=2.4e-06  Score=84.35  Aligned_cols=86  Identities=19%  Similarity=0.253  Sum_probs=63.3

Q ss_pred             CEEEEEecCCcHHHHHHHHhccC--CEEEEEEecCC-----------------ccc---cccCCCCCCee-eccceeEEc
Q 013303          198 QVVILIGHYASGLDIKRDLAGFA--KEVHIASRSVA-----------------DET---HEKQPGYDNMW-LHSMVERAN  254 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~--~~V~l~~r~~~-----------------~~~---~~~~~~~~~v~-~~~~v~~i~  254 (446)
                      |+|||||+|+.|+.+|..|++.+  .+|+++.+++.                 ++.   +..+.+..++. +...+++|+
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~~v~~Id   82 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINEKAESID   82 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECSCEEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEeEEEEEE
Confidence            78999999999999999999865  68999988763                 000   11111222332 345788887


Q ss_pred             cCC-cEEecCCcEEeecEEEEecCccCCCC
Q 013303          255 EDG-TVVFRNGRVVSADVIMHCTGYKYNYP  283 (446)
Q Consensus       255 ~~~-~v~~~dG~~~~~D~vi~atG~~~~~~  283 (446)
                      .+. .|+++||+++++|.+|+|||-++.++
T Consensus        83 ~~~~~V~~~~g~~i~YD~LViAtG~~~~~~  112 (430)
T 3hyw_A           83 PDANTVTTQSGKKIEYDYLVIATGPKLVFG  112 (430)
T ss_dssp             TTTTEEEETTCCEEECSEEEECCCCEEECC
T ss_pred             CCCCEEEECCCCEEECCEEEEeCCCCccCC
Confidence            654 48899999999999999999876543

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.15  E-value=3.5e-06  Score=79.15  Aligned_cols=101  Identities=14%  Similarity=0.115  Sum_probs=72.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||+|+.|+.+|..|++.|.+|+++++.+.+    ..                                      
T Consensus       147 ~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~----~~--------------------------------------  184 (315)
T 3r9u_A          147 NKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEF----RA--------------------------------------  184 (315)
T ss_dssp             TSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSC----BS--------------------------------------
T ss_pred             cCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCC----CC--------------------------------------
Confidence            468999999999999999999999999999986532    00                                      


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                          ..   +++....++.|+.  ++++++|.++....+....|++...+++..++.+|.||+|
T Consensus       185 --------------------~~---~~~~~~~~~~gv~--~~~~~~v~~i~~~~~~~~~v~~~~~~g~~~~~~~D~vv~a  239 (315)
T 3r9u_A          185 --------------------AP---STVEKVKKNEKIE--LITSASVDEVYGDKMGVAGVKVKLKDGSIRDLNVPGIFTF  239 (315)
T ss_dssp             --------------------CH---HHHHHHHHCTTEE--EECSCEEEEEEEETTEEEEEEEECTTSCEEEECCSCEEEC
T ss_pred             --------------------CH---HHHHHHHhcCCeE--EEeCcEEEEEEcCCCcEEEEEEEcCCCCeEEeecCeEEEE
Confidence                                01   2233444566777  8899999999876422234666533444567899999999


Q ss_pred             cCCCCCCccC
Q 013303          162 NGHFSVPRLA  171 (446)
Q Consensus       162 tG~~s~p~~p  171 (446)
                      +|  ..|+..
T Consensus       240 ~G--~~p~~~  247 (315)
T 3r9u_A          240 VG--LNVRNE  247 (315)
T ss_dssp             SC--EEECCG
T ss_pred             Ec--CCCCch
Confidence            99  566544

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.15  E-value=1.3e-05  Score=75.63  Aligned_cols=99  Identities=14%  Similarity=0.120  Sum_probs=71.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.                                           
T Consensus       155 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~-------------------------------------------  191 (319)
T 3cty_A          155 GKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYM-------------------------------------------  191 (319)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCC-------------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccC-------------------------------------------
Confidence            3689999999999999999999999999999864220                                           


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCC-ceEEEEEeC-CCceEEEEEcEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN-KWKVKSRKK-DDVVEEETFDAVV  159 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~-~~~v~~~~~-~~~~~~~~~d~VV  159 (446)
                                         ....+    .+.+.+.++.  ++++++|.++...+ + ...|.+.+. +++..++.+|.||
T Consensus       192 -------------------~~~~l----~~~l~~~gv~--i~~~~~v~~i~~~~-~~v~~v~~~~~~~g~~~~i~~D~vi  245 (319)
T 3cty_A          192 -------------------CENAY----VQEIKKRNIP--YIMNAQVTEIVGDG-KKVTGVKYKDRTTGEEKLIETDGVF  245 (319)
T ss_dssp             -------------------SCHHH----HHHHHHTTCC--EECSEEEEEEEESS-SSEEEEEEEETTTCCEEEECCSEEE
T ss_pred             -------------------CCHHH----HHHHhcCCcE--EEcCCeEEEEecCC-ceEEEEEEEEcCCCceEEEecCEEE
Confidence                               00222    2333467888  99999999998754 3 234666542 3344578999999


Q ss_pred             EccCCCCCCccC
Q 013303          160 VCNGHFSVPRLA  171 (446)
Q Consensus       160 vAtG~~s~p~~p  171 (446)
                      +|+|  ..|+.+
T Consensus       246 ~a~G--~~p~~~  255 (319)
T 3cty_A          246 IYVG--LIPQTS  255 (319)
T ss_dssp             ECCC--EEECCG
T ss_pred             EeeC--CccChH
Confidence            9999  556543

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.15  E-value=1.4e-05  Score=75.27  Aligned_cols=99  Identities=19%  Similarity=0.193  Sum_probs=72.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||+|+.|+.+|..|++.|.+|+++++.+.+..                                          
T Consensus       154 ~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~------------------------------------------  191 (323)
T 3f8d_A          154 NRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKA------------------------------------------  191 (323)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCS------------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCc------------------------------------------
Confidence            46899999999999999999999999999998653200                                          


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVV  160 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~VVv  160 (446)
                                          ..   +++....++.++.  ++++++|.++...+ ....|++.+. .++..++.+|.||+
T Consensus       192 --------------------~~---~~~~~~~~~~gv~--~~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~~~~D~vv~  245 (323)
T 3f8d_A          192 --------------------QP---IYVETVKKKPNVE--FVLNSVVKEIKGDK-VVKQVVVENLKTGEIKELNVNGVFI  245 (323)
T ss_dssp             --------------------CH---HHHHHHHTCTTEE--EECSEEEEEEEESS-SEEEEEEEETTTCCEEEEECSEEEE
T ss_pred             --------------------CH---HHHHHHHhCCCcE--EEeCCEEEEEeccC-ceeEEEEEECCCCceEEEEcCEEEE
Confidence                                01   2233344445776  88899999998764 4455777762 23445789999999


Q ss_pred             ccCCCCCCcc
Q 013303          161 CNGHFSVPRL  170 (446)
Q Consensus       161 AtG~~s~p~~  170 (446)
                      |+|  ..|+.
T Consensus       246 a~G--~~p~~  253 (323)
T 3f8d_A          246 EIG--FDPPT  253 (323)
T ss_dssp             CCC--EECCH
T ss_pred             EEC--CCCCh
Confidence            999  56664

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.12  E-value=3.6e-06  Score=78.27  Aligned_cols=88  Identities=19%  Similarity=0.232  Sum_probs=64.1

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCcccc-----------------------ccCCCCCCee-eccceeEE
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETH-----------------------EKQPGYDNMW-LHSMVERA  253 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~~~~-----------------------~~~~~~~~v~-~~~~v~~i  253 (446)
                      .+|+|||+|++|+.+|..|++.+.+|+++.+.+....+                       ..+.+...+. ....+..+
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i   82 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVEGRVTDA   82 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEESCEEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEEeEEEEE
Confidence            47999999999999999999999999999975431000                       1112222232 25577777


Q ss_pred             ccCC---cEEecCCcEEeecEEEEecCccCCCCCC
Q 013303          254 NEDG---TVVFRNGRVVSADVIMHCTGYKYNYPFL  285 (446)
Q Consensus       254 ~~~~---~v~~~dG~~~~~D~vi~atG~~~~~~~l  285 (446)
                      ..++   .|.+.+|+++.+|.||+|||..|..|-+
T Consensus        83 ~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~~~~~  117 (297)
T 3fbs_A           83 KGSFGEFIVEIDGGRRETAGRLILAMGVTDELPEI  117 (297)
T ss_dssp             EEETTEEEEEETTSCEEEEEEEEECCCCEEECCCC
T ss_pred             EEcCCeEEEEECCCCEEEcCEEEECCCCCCCCCCC
Confidence            6543   3778899999999999999999876543

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=98.11  E-value=1.5e-06  Score=87.48  Aligned_cols=41  Identities=41%  Similarity=0.603  Sum_probs=38.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI   42 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~   42 (446)
                      ++||+|||||++||++|..|++.|++|+|+|+++.+||.+.
T Consensus        33 ~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~   73 (498)
T 2iid_A           33 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVR   73 (498)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcee
Confidence            47999999999999999999999999999999999999764

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.11  E-value=4e-06  Score=82.99  Aligned_cols=88  Identities=16%  Similarity=0.247  Sum_probs=65.1

Q ss_pred             CEEEEEecCCcHHHHHHHHhc---cCCEEEEEEecCCc-----------------cc---cccC-CCCCCeeeccceeEE
Q 013303          198 QVVILIGHYASGLDIKRDLAG---FAKEVHIASRSVAD-----------------ET---HEKQ-PGYDNMWLHSMVERA  253 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~---~~~~V~l~~r~~~~-----------------~~---~~~~-~~~~~v~~~~~v~~i  253 (446)
                      ++|+|||+|++|+.+|..|++   .+.+|+++.+.+..                 +.   +..+ .+.+--.....+..+
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~~~~v~~i   84 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIAQSAEQI   84 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEECSCEEEE
T ss_pred             CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEEEeEEEEE
Confidence            689999999999999999998   78899999887641                 00   0011 112212234678888


Q ss_pred             ccCC-cEEecCCcEEeecEEEEecCccCCCCCC
Q 013303          254 NEDG-TVVFRNGRVVSADVIMHCTGYKYNYPFL  285 (446)
Q Consensus       254 ~~~~-~v~~~dG~~~~~D~vi~atG~~~~~~~l  285 (446)
                      +.++ .|.+++|+++.+|.||+|||..++.+-+
T Consensus        85 d~~~~~V~~~~g~~i~~d~lviAtG~~~~~~~i  117 (437)
T 3sx6_A           85 DAEAQNITLADGNTVHYDYLMIATGPKLAFENV  117 (437)
T ss_dssp             ETTTTEEEETTSCEEECSEEEECCCCEECGGGS
T ss_pred             EcCCCEEEECCCCEEECCEEEECCCCCcCcccC
Confidence            7654 4888999999999999999999876543

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=98.11  E-value=1.6e-06  Score=85.66  Aligned_cols=35  Identities=34%  Similarity=0.581  Sum_probs=31.8

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      |++||+||||||+|+++|..|++.|++|+|||+.+
T Consensus        21 m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           21 MKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             --CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            45799999999999999999999999999999975

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.06  E-value=8.5e-06  Score=79.16  Aligned_cols=88  Identities=9%  Similarity=0.145  Sum_probs=65.7

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc--------ccc------ccCCC---------CCCeeeccceeEEc
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD--------ETH------EKQPG---------YDNMWLHSMVERAN  254 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~--------~~~------~~~~~---------~~~v~~~~~v~~i~  254 (446)
                      -+|+|||+|+.|+..|..|...+.+|+++.+.+..        ..+      ..+..         ...+.....|.+++
T Consensus        10 ~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V~~id   89 (385)
T 3klj_A           10 TKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFATSID   89 (385)
T ss_dssp             CSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCEEEEE
T ss_pred             CCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEEEEEE
Confidence            47999999999999999998788899999887641        000      11110         11344556788887


Q ss_pred             cCC-cEEecCCcEEeecEEEEecCccCCCCCC
Q 013303          255 EDG-TVVFRNGRVVSADVIMHCTGYKYNYPFL  285 (446)
Q Consensus       255 ~~~-~v~~~dG~~~~~D~vi~atG~~~~~~~l  285 (446)
                      .+. .|.+++|+++.+|.+|+|||.+|..|-+
T Consensus        90 ~~~~~v~~~~g~~~~yd~lvlAtG~~p~~p~i  121 (385)
T 3klj_A           90 PNNKLVTLKSGEKIKYEKLIIASGSIANKIKV  121 (385)
T ss_dssp             TTTTEEEETTSCEEECSEEEECCCEEECCCCC
T ss_pred             CCCCEEEECCCCEEECCEEEEecCCCcCCCCC
Confidence            654 4888999999999999999999876644

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.06  E-value=4e-06  Score=79.79  Aligned_cols=101  Identities=16%  Similarity=0.154  Sum_probs=70.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.    .                                      
T Consensus       155 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~----~--------------------------------------  192 (335)
T 2a87_A          155 DQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFR----A--------------------------------------  192 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCS----S--------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCC----c--------------------------------------
Confidence            4789999999999999999999999999999865320    0                                      


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVVV  160 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~VVv  160 (446)
                          .                +.+   .....++.+++  ++++++|.++.... +...|.+.+. +++..++.+|.||+
T Consensus       193 ----~----------------~~~---~~~~~~~~gV~--v~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~i~~D~vi~  246 (335)
T 2a87_A          193 ----S----------------KIM---LDRARNNDKIR--FLTNHTVVAVDGDT-TVTGLRVRDTNTGAETTLPVTGVFV  246 (335)
T ss_dssp             ----C----------------TTH---HHHHHHCTTEE--EECSEEEEEEECSS-SCCEEEEEEETTSCCEEECCSCEEE
T ss_pred             ----c----------------HHH---HHHHhccCCcE--EEeCceeEEEecCC-cEeEEEEEEcCCCceEEeecCEEEE
Confidence                0                011   11233456776  88899999998654 3334555542 23335789999999


Q ss_pred             ccCCCCCCccCC
Q 013303          161 CNGHFSVPRLAQ  172 (446)
Q Consensus       161 AtG~~s~p~~p~  172 (446)
                      |+|  ..|+.+-
T Consensus       247 a~G--~~p~~~~  256 (335)
T 2a87_A          247 AIG--HEPRSGL  256 (335)
T ss_dssp             CSC--EEECCTT
T ss_pred             ccC--CccChhH
Confidence            999  6666543

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.04  E-value=2.6e-05  Score=73.67  Aligned_cols=99  Identities=18%  Similarity=0.136  Sum_probs=73.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.                                           
T Consensus       154 ~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~-------------------------------------------  190 (332)
T 3lzw_A          154 GRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFR-------------------------------------------  190 (332)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCS-------------------------------------------
T ss_pred             CCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCC-------------------------------------------
Confidence            4689999999999999999999999999999865320                                           


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCC-CceEEEEEcEEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVV  160 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~-~~~~~~~~d~VVv  160 (446)
                                         ......    +.+++.++.  ++++++|.++...+ +...|++.+.. ++..++.+|.||+
T Consensus       191 -------------------~~~~~~----~~l~~~gv~--~~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~~~~D~vv~  244 (332)
T 3lzw_A          191 -------------------AHEHSV----ENLHASKVN--VLTPFVPAELIGED-KIEQLVLEEVKGDRKEILEIDDLIV  244 (332)
T ss_dssp             -------------------SCHHHH----HHHHHSSCE--EETTEEEEEEECSS-SCCEEEEEETTSCCEEEEECSEEEE
T ss_pred             -------------------ccHHHH----HHHhcCCeE--EEeCceeeEEecCC-ceEEEEEEecCCCceEEEECCEEEE
Confidence                               001111    224567887  89999999998765 45667777643 3456799999999


Q ss_pred             ccCCCCCCccC
Q 013303          161 CNGHFSVPRLA  171 (446)
Q Consensus       161 AtG~~s~p~~p  171 (446)
                      |+|  ..|+.+
T Consensus       245 a~G--~~p~~~  253 (332)
T 3lzw_A          245 NYG--FVSSLG  253 (332)
T ss_dssp             CCC--EECCCG
T ss_pred             eec--cCCCch
Confidence            999  566544

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=98.03  E-value=3.1e-06  Score=83.70  Aligned_cols=42  Identities=19%  Similarity=0.275  Sum_probs=39.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~   43 (446)
                      .+||+|||||++|+++|..|++.|++|+|+|+++.+||.+..
T Consensus         6 ~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~s   47 (433)
T 1d5t_A            6 EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSS   47 (433)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSCE
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCccccccc
Confidence            468999999999999999999999999999999999998765

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=97.99  E-value=7.2e-06  Score=80.35  Aligned_cols=87  Identities=14%  Similarity=0.169  Sum_probs=61.9

Q ss_pred             CEEEEEecCCcHHHHHHHHhc---cCCEEEEEEecCCcc---c-----------------ccc-CCCCC-CeeeccceeE
Q 013303          198 QVVILIGHYASGLDIKRDLAG---FAKEVHIASRSVADE---T-----------------HEK-QPGYD-NMWLHSMVER  252 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~---~~~~V~l~~r~~~~~---~-----------------~~~-~~~~~-~v~~~~~v~~  252 (446)
                      ++|+|||+|.+|+.+|..|++   .+.+|+++.+++...   .                 +.. +.+.+ ++. ...+..
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~-~~~v~~   80 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQ-EGTVEK   80 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEE-ECEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEE-EeeEEE
Confidence            589999999999999999999   889999999876300   0                 000 01111 222 236777


Q ss_pred             EccCC-cEEecCCcE----EeecEEEEecCccCCCCCC
Q 013303          253 ANEDG-TVVFRNGRV----VSADVIMHCTGYKYNYPFL  285 (446)
Q Consensus       253 i~~~~-~v~~~dG~~----~~~D~vi~atG~~~~~~~l  285 (446)
                      ++.++ .|.+.+|+.    +++|.||+|||..|+.|-+
T Consensus        81 i~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~~~~i  118 (409)
T 3h8l_A           81 IDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELV  118 (409)
T ss_dssp             EETTTTEEEEECTTSCEEEEECSEEEECCCCEECGGGS
T ss_pred             EeCCCCEEEEccCCcccceeeCCEEEECCCCCcCccCC
Confidence            76543 488888764    8899999999999876533

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=97.98  E-value=4.6e-06  Score=86.96  Aligned_cols=42  Identities=31%  Similarity=0.497  Sum_probs=38.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~   43 (446)
                      .++|+|||||++||++|..|++.|++|+|||+.+.+||.+..
T Consensus       107 ~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~~  148 (662)
T 2z3y_A          107 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVAT  148 (662)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCE
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcccc
Confidence            479999999999999999999999999999999999996543

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=97.97  E-value=4.4e-06  Score=83.53  Aligned_cols=42  Identities=26%  Similarity=0.476  Sum_probs=38.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCCCcCceeee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQVGGSWIY   43 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~~~GG~w~~   43 (446)
                      .+||+|||||++||++|..|++.|+ +|+|+|+++.+||.|..
T Consensus         4 ~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~~   46 (472)
T 1b37_A            4 GPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHK   46 (472)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCceee
Confidence            4799999999999999999999998 89999999999998764

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=97.97  E-value=6.3e-06  Score=79.36  Aligned_cols=34  Identities=29%  Similarity=0.468  Sum_probs=32.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      ++||+|||||++|+++|.+|++.|++|+|+|+..
T Consensus         6 ~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~   39 (363)
T 1c0p_A            6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (363)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence            4699999999999999999999999999999975

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.95  E-value=3.6e-05  Score=77.84  Aligned_cols=99  Identities=21%  Similarity=0.267  Sum_probs=71.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||.+|+.+|..|++.|.+|+++++.+.+.    .                                      
T Consensus       355 ~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~----~--------------------------------------  392 (521)
T 1hyu_A          355 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK----A--------------------------------------  392 (521)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCC----S--------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccC----c--------------------------------------
Confidence            3689999999999999999999999999999865320    0                                      


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCCCcEEeCeEEEEEEEcCCCce-EEEEEeC-CCceEEEEEcEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKW-KVKSRKK-DDVVEEETFDAV  158 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~-~~l~~~i~~~~~V~~v~~~~~~~~-~v~~~~~-~~~~~~~~~d~V  158 (446)
                                         .     .++.+...+ .|+.  ++++++|+.+...+ +.. .|.+.+. .++..++.+|.|
T Consensus       393 -------------------~-----~~l~~~l~~~~gV~--v~~~~~v~~i~~~~-~~v~~v~~~~~~~g~~~~i~~D~v  445 (521)
T 1hyu_A          393 -------------------D-----QVLQDKVRSLKNVD--IILNAQTTEVKGDG-SKVVGLEYRDRVSGDIHSVALAGI  445 (521)
T ss_dssp             -------------------C-----HHHHHHHTTCTTEE--EECSEEEEEEEECS-SSEEEEEEEETTTCCEEEEECSEE
T ss_pred             -------------------C-----HHHHHHHhcCCCcE--EEeCCEEEEEEcCC-CcEEEEEEEeCCCCceEEEEcCEE
Confidence                               0     123333333 3666  88899999998654 333 4666653 344567899999


Q ss_pred             EEccCCCCCCccC
Q 013303          159 VVCNGHFSVPRLA  171 (446)
Q Consensus       159 VvAtG~~s~p~~p  171 (446)
                      |+|+|  ..|+..
T Consensus       446 i~a~G--~~pn~~  456 (521)
T 1hyu_A          446 FVQIG--LLPNTH  456 (521)
T ss_dssp             EECCC--EEESCG
T ss_pred             EECcC--CCCCch
Confidence            99999  566543

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=97.95  E-value=5.5e-06  Score=88.10  Aligned_cols=41  Identities=32%  Similarity=0.524  Sum_probs=38.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI   42 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~   42 (446)
                      .++|+|||||++||++|..|++.|++|+|||+.+.+||.+.
T Consensus       278 ~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG~~~  318 (852)
T 2xag_A          278 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVA  318 (852)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCCCcee
Confidence            46999999999999999999999999999999999998643

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=97.95  E-value=5.2e-06  Score=82.35  Aligned_cols=41  Identities=20%  Similarity=0.353  Sum_probs=38.7

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~   43 (446)
                      +||+|||||++|+++|..|++.|.+|+++|+++.+||.+..
T Consensus        21 ~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~~~s   61 (475)
T 3p1w_A           21 YDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETAS   61 (475)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCCCccc
Confidence            69999999999999999999999999999999999997654

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=97.93  E-value=3.1e-05  Score=81.16  Aligned_cols=101  Identities=24%  Similarity=0.175  Sum_probs=72.3

Q ss_pred             CeEEEEC--cChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCccc
Q 013303            3 RHVAVIG--AGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (446)
Q Consensus         3 ~~V~IIG--aG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~   80 (446)
                      ++|+|||  +|..|+.+|..|++.|.+|+++++.+.+......                                     
T Consensus       524 ~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~~-------------------------------------  566 (690)
T 3k30_A          524 KKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNN-------------------------------------  566 (690)
T ss_dssp             SEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGGG-------------------------------------
T ss_pred             CEEEEEcCCCCccHHHHHHHHHhCCCeeEEEeccccccccccc-------------------------------------
Confidence            5799999  9999999999999999999999987643211100                                     


Q ss_pred             CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEE
Q 013303           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVV  160 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVv  160 (446)
                                            ..+...+.+.+++.|+.  ++.+++|++|+..   .-.+.... .++..++.+|.||+
T Consensus       567 ----------------------~~~~~~l~~~l~~~GV~--i~~~~~V~~i~~~---~~~v~~~~-~~~~~~i~aD~VV~  618 (690)
T 3k30_A          567 ----------------------TFEVNRIQRRLIENGVA--RVTDHAVVAVGAG---GVTVRDTY-ASIERELECDAVVM  618 (690)
T ss_dssp             ----------------------GTCHHHHHHHHHHTTCE--EEESEEEEEEETT---EEEEEETT-TCCEEEEECSEEEE
T ss_pred             ----------------------chhHHHHHHHHHHCCCE--EEcCcEEEEEECC---eEEEEEcc-CCeEEEEECCEEEE
Confidence                                  11235566677778888  9999999999743   22332211 22345789999999


Q ss_pred             ccCCCCCCcc
Q 013303          161 CNGHFSVPRL  170 (446)
Q Consensus       161 AtG~~s~p~~  170 (446)
                      |+|  ..|+.
T Consensus       619 A~G--~~p~~  626 (690)
T 3k30_A          619 VTA--RLPRE  626 (690)
T ss_dssp             ESC--EEECC
T ss_pred             CCC--CCCCh
Confidence            999  55553

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.92  E-value=1.3e-05  Score=76.62  Aligned_cols=39  Identities=33%  Similarity=0.430  Sum_probs=35.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCce
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS   40 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~   40 (446)
                      |+||+|||||+||+.||..|++.|.+|+|+|+.+..+..
T Consensus         1 m~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~~tp   39 (443)
T 3g5s_A            1 MERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKRMTP   39 (443)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTSCCS
T ss_pred             CCCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCcCCc
Confidence            489999999999999999999999999999998755443

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=97.89  E-value=3.6e-05  Score=72.21  Aligned_cols=34  Identities=21%  Similarity=0.424  Sum_probs=31.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .++|+|||||..|+-+|..|++.|.+|+++++..
T Consensus       152 ~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~  185 (314)
T 4a5l_A          152 NKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRD  185 (314)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             CCeEEEECCChHHHHHHHHHHHhCCeeeeecccc
Confidence            3789999999999999999999999999999753

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=97.86  E-value=2.8e-05  Score=72.14  Aligned_cols=33  Identities=24%  Similarity=0.363  Sum_probs=30.5

Q ss_pred             CEEEEEecCCcHHHHHHHHhcc-CCEEEEEEecC
Q 013303          198 QVVILIGHYASGLDIKRDLAGF-AKEVHIASRSV  230 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~-~~~V~l~~r~~  230 (446)
                      ..|+|||+|++|+.+|..|++. +.+|+++.+.+
T Consensus        40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~   73 (284)
T 1rp0_A           40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV   73 (284)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            4799999999999999999997 99999999875

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=97.86  E-value=7.3e-06  Score=78.50  Aligned_cols=34  Identities=29%  Similarity=0.334  Sum_probs=31.6

Q ss_pred             CeEEEECcChHHHHHHHHHHHCC------CcEEEEeeCCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREG------HTVVVYEKGEQ   36 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g------~~v~v~e~~~~   36 (446)
                      +||+|||||++|+++|.+|++.|      .+|+|+|+...
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~   40 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFT   40 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCG
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCC
Confidence            59999999999999999999998      89999999763

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=97.83  E-value=2.6e-05  Score=73.04  Aligned_cols=87  Identities=16%  Similarity=0.251  Sum_probs=59.4

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecCCccc-----------------------cccCCCCCCee-eccceeEEc
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVADET-----------------------HEKQPGYDNMW-LHSMVERAN  254 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~~~-----------------------~~~~~~~~~v~-~~~~v~~i~  254 (446)
                      .|+|||+|+.|+..|..+++.+.+|+++.+....-.                       ..++.++..+. ....+..+.
T Consensus         8 DVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (304)
T 4fk1_A            8 DCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYEKTVVMIT   87 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEECCEEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEeeEEEEee
Confidence            699999999999999999999999999987543000                       01112222221 222333332


Q ss_pred             c--CC--cEEecCCcEEeecEEEEecCccCCCCCC
Q 013303          255 E--DG--TVVFRNGRVVSADVIMHCTGYKYNYPFL  285 (446)
Q Consensus       255 ~--~~--~v~~~dG~~~~~D~vi~atG~~~~~~~l  285 (446)
                      .  ++  .+.+.||+++.+|.||+|||.+|..|-+
T Consensus        88 ~~~~~~~~v~~~~g~~~~a~~liiATGs~p~~p~i  122 (304)
T 4fk1_A           88 KQSTGLFEIVTKDHTKYLAERVLLATGMQEEFPSI  122 (304)
T ss_dssp             ECTTSCEEEEETTCCEEEEEEEEECCCCEEECCSC
T ss_pred             ecCCCcEEEEECCCCEEEeCEEEEccCCccccccc
Confidence            2  11  2778899999999999999999876644

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=97.72  E-value=9.4e-05  Score=73.66  Aligned_cols=34  Identities=12%  Similarity=0.173  Sum_probs=31.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .++|+|||||.+|+-+|..|++.|.+|+++++.+
T Consensus       197 ~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~  230 (464)
T 2xve_A          197 DKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRT  230 (464)
T ss_dssp             TSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSS
T ss_pred             CCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECC
Confidence            4789999999999999999999999999999865

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.64  E-value=0.00016  Score=71.85  Aligned_cols=35  Identities=31%  Similarity=0.401  Sum_probs=30.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHC--------------------CC-cEEEEeeCCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLRE--------------------GH-TVVVYEKGEQ   36 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~--------------------g~-~v~v~e~~~~   36 (446)
                      .++|+|||+|..|+-+|..|++.                    |. +|+|+++...
T Consensus       147 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~  202 (456)
T 1lqt_A          147 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP  202 (456)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCCh
Confidence            36899999999999999999874                    54 8999998753

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.60  E-value=0.00029  Score=70.02  Aligned_cols=34  Identities=24%  Similarity=0.325  Sum_probs=30.1

Q ss_pred             CCeEEEECcChHHHHHHHHHH--------------------HCCC-cEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELL--------------------REGH-TVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~--------------------~~g~-~v~v~e~~~   35 (446)
                      .++|+|||+|..|+-+|..|+                    +.|. +|+|+++..
T Consensus       145 ~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~  199 (460)
T 1cjc_A          145 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG  199 (460)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCC
Confidence            368999999999999999999                    5677 699999875

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.60  E-value=9.7e-05  Score=73.30  Aligned_cols=34  Identities=24%  Similarity=0.428  Sum_probs=30.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~   35 (446)
                      .++|+|||||..|+-+|..+.+.|. +|+++++.+
T Consensus       264 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~  298 (456)
T 2vdc_G          264 GKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRD  298 (456)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCC
Confidence            3689999999999999999999998 499998864

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=97.58  E-value=2.4e-05  Score=81.16  Aligned_cols=35  Identities=31%  Similarity=0.471  Sum_probs=33.5

Q ss_pred             CeEEEECcChHHHHHHHHHHHCC--------CcEEEEeeCC-Cc
Q 013303            3 RHVAVIGAGAAGLVVGHELLREG--------HTVVVYEKGE-QV   37 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g--------~~v~v~e~~~-~~   37 (446)
                      ++|+|||||++||+||..|.+.|        ++|+|||+++ ++
T Consensus        57 ~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           57 YRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence            68999999999999999999998        9999999998 88

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.58  E-value=0.00018  Score=78.09  Aligned_cols=95  Identities=17%  Similarity=0.146  Sum_probs=70.7

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d   82 (446)
                      ++|+|||+|+.|+.+|..|++.|.+|+|+|+.+.+                                             
T Consensus       285 k~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~---------------------------------------------  319 (965)
T 2gag_A          285 ARIAVATTNDSAYELVRELAATGGVVAVIDARSSI---------------------------------------------  319 (965)
T ss_dssp             SSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSC---------------------------------------------
T ss_pred             CeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCcc---------------------------------------------
Confidence            68999999999999999999999999999986522                                             


Q ss_pred             CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEc-CCCceEEEEEe--C---CCceEEEEEc
Q 013303           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV-ESNKWKVKSRK--K---DDVVEEETFD  156 (446)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~-~~~~~~v~~~~--~---~~~~~~~~~d  156 (446)
                                       .  ..     .+.+++.|+.  +++++.|.+|... ++....|++.+  .   .++..++.+|
T Consensus       320 -----------------~--~~-----~~~l~~~GV~--v~~~~~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D  373 (965)
T 2gag_A          320 -----------------S--AA-----AAQAVADGVQ--VISGSVVVDTEADENGELSAIVVAELDEARELGGTQRFEAD  373 (965)
T ss_dssp             -----------------C--HH-----HHHHHHTTCC--EEETEEEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECS
T ss_pred             -----------------c--hh-----HHHHHhCCeE--EEeCCEeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcC
Confidence                             0  01     2345677888  9999999999873 21223455554  1   1223579999


Q ss_pred             EEEEccCCCCCCcc
Q 013303          157 AVVVCNGHFSVPRL  170 (446)
Q Consensus       157 ~VVvAtG~~s~p~~  170 (446)
                      .||+|+|  ..|+.
T Consensus       374 ~Vv~a~G--~~P~~  385 (965)
T 2gag_A          374 VLAVAGG--FNPVV  385 (965)
T ss_dssp             EEEEECC--EEECC
T ss_pred             EEEECCC--cCcCh
Confidence            9999999  66664

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=97.55  E-value=7.9e-05  Score=69.87  Aligned_cols=87  Identities=14%  Similarity=0.199  Sum_probs=56.7

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecCCccc------cccCCCCC--------------------CeeeccceeE
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVADET------HEKQPGYD--------------------NMWLHSMVER  252 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~~~------~~~~~~~~--------------------~v~~~~~v~~  252 (446)
                      .|+|||+|+.|+..|..|++.|.+|+++.+...--.      +..++...                    .+.....+..
T Consensus         8 DvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (312)
T 4gcm_A            8 DIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSV   87 (312)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEEECCCCEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCeeecccccCCcCCccccchHHHHHHHHHHHhhccccccceeeeee
Confidence            699999999999999999999999999987543100      00111110                    0111111111


Q ss_pred             Ec-cCCcEEecCCcEEeecEEEEecCccCCCCCC
Q 013303          253 AN-EDGTVVFRNGRVVSADVIMHCTGYKYNYPFL  285 (446)
Q Consensus       253 i~-~~~~v~~~dG~~~~~D~vi~atG~~~~~~~l  285 (446)
                      .. ....+...+++++.+|.||+|||.+|..|-+
T Consensus        88 ~~~~~~~~~~~~~~~~~~d~liiAtGs~~~~~~i  121 (312)
T 4gcm_A           88 EDKGEYKVINFGNKELTAKAVIIATGAEYKKIGV  121 (312)
T ss_dssp             EECSSCEEEECSSCEEEEEEEEECCCEEECCCCC
T ss_pred             eeeecceeeccCCeEEEeceeEEcccCccCcCCC
Confidence            21 2233566788899999999999998876544

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=97.52  E-value=9.6e-05  Score=70.37  Aligned_cols=80  Identities=20%  Similarity=0.103  Sum_probs=56.4

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc----------------cccccCC----------------------
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD----------------ETHEKQP----------------------  239 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~----------------~~~~~~~----------------------  239 (446)
                      .+|+|||+|++|+.+|..|++.+.+|+++.+.+..                .....+.                      
T Consensus         4 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   83 (357)
T 4a9w_A            4 VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYLA   83 (357)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHHH
Confidence            47999999999999999999999999999987530                0000000                      


Q ss_pred             ----C-CCCeeeccceeEEccCCc----EEecCCcEEeecEEEEecCc
Q 013303          240 ----G-YDNMWLHSMVERANEDGT----VVFRNGRVVSADVIMHCTGY  278 (446)
Q Consensus       240 ----~-~~~v~~~~~v~~i~~~~~----v~~~dG~~~~~D~vi~atG~  278 (446)
                          + ...+..+..|.++..++.    |.+.+| ++.+|.||+|||.
T Consensus        84 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~  130 (357)
T 4a9w_A           84 QYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGT  130 (357)
T ss_dssp             HHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCS
T ss_pred             HHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCC
Confidence                0 013445567777764432    555566 8999999999995

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.49  E-value=0.00014  Score=75.91  Aligned_cols=55  Identities=16%  Similarity=0.114  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCCCcc
Q 013303          106 LRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRL  170 (446)
Q Consensus       106 ~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~p~~  170 (446)
                      ..++.+..++.|++  ++.+++|.+++.   +..+++ .  +++..++.+|.||+|+|  ..|+.
T Consensus       576 ~~~~~~~l~~~GV~--v~~~~~v~~i~~---~~v~~~-~--~G~~~~i~~D~Vi~a~G--~~p~~  630 (671)
T 1ps9_A          576 GWIHRTTLLSRGVK--MIPGVSYQKIDD---DGLHVV-I--NGETQVLAVDNVVICAG--QEPNR  630 (671)
T ss_dssp             HHHHHHHHHHTTCE--EECSCEEEEEET---TEEEEE-E--TTEEEEECCSEEEECCC--EEECC
T ss_pred             HHHHHHHHHhcCCE--EEeCcEEEEEeC---CeEEEe-c--CCeEEEEeCCEEEECCC--ccccH
Confidence            34566667778888  999999999873   333333 2  33345789999999999  56653

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=97.49  E-value=0.00027  Score=70.01  Aligned_cols=34  Identities=24%  Similarity=0.235  Sum_probs=31.5

Q ss_pred             CCEEEEEecCCcHHHHHHHHhccCC--EEEEEEecC
Q 013303          197 DQVVILIGHYASGLDIKRDLAGFAK--EVHIASRSV  230 (446)
Q Consensus       197 ~k~VvVVG~G~sg~eia~~l~~~~~--~V~l~~r~~  230 (446)
                      .++|+|||+|++|+-+|..|++.|.  +|+++.+.+
T Consensus         6 ~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~   41 (447)
T 2gv8_A            6 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG   41 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCC
Confidence            4689999999999999999999999  999999864

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.49  E-value=0.0002  Score=75.50  Aligned_cols=34  Identities=15%  Similarity=0.191  Sum_probs=31.5

Q ss_pred             CCeEEEEC--cChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIG--AGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIG--aG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .++|+|||  ||..|+.+|..|++.|.+|+++++.+
T Consensus       528 gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~  563 (729)
T 1o94_A          528 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH  563 (729)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc
Confidence            36899999  99999999999999999999999865

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=97.48  E-value=0.00014  Score=73.83  Aligned_cols=87  Identities=20%  Similarity=0.162  Sum_probs=62.2

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc------c------------cc------------------------
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD------E------------TH------------------------  235 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~------~------------~~------------------------  235 (446)
                      .+|+|||+|.+|+-+|..|++.|.+|+++.+.+..      .            .+                        
T Consensus        22 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~ei  101 (549)
T 4ap3_A           22 YDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPEI  101 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHHHH
T ss_pred             CCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHHHH
Confidence            58999999999999999999999999999985420      0            00                        


Q ss_pred             --------ccCCCCCCeeeccceeEEccC-C----cEEecCCcEEeecEEEEecC--ccCCCCC
Q 013303          236 --------EKQPGYDNMWLHSMVERANED-G----TVVFRNGRVVSADVIMHCTG--YKYNYPF  284 (446)
Q Consensus       236 --------~~~~~~~~v~~~~~v~~i~~~-~----~v~~~dG~~~~~D~vi~atG--~~~~~~~  284 (446)
                              .+..-...+..+..|.++..+ .    .|.+.+|+++.+|.||+|||  ..|..|-
T Consensus       102 ~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~p~  165 (549)
T 4ap3_A          102 LAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANTPA  165 (549)
T ss_dssp             HHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCCCC
T ss_pred             HHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCCCC
Confidence                    000000145566777777532 2    37888999999999999999  4555543

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=97.47  E-value=0.00013  Score=70.40  Aligned_cols=35  Identities=17%  Similarity=0.135  Sum_probs=31.9

Q ss_pred             CCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       197 ~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      ..+|+|||+|++|+.+|..|++.|.+|+++.+.+.
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~   45 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSE   45 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            46899999999999999999999999999998653

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=97.46  E-value=0.00021  Score=72.40  Aligned_cols=87  Identities=15%  Similarity=0.120  Sum_probs=62.0

Q ss_pred             CEEEEEecCCcHHHHHHHHh-ccCCEEEEEEecCCc------------------ccc-----------------------
Q 013303          198 QVVILIGHYASGLDIKRDLA-GFAKEVHIASRSVAD------------------ETH-----------------------  235 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~-~~~~~V~l~~r~~~~------------------~~~-----------------------  235 (446)
                      .+|+|||+|.+|+-+|..|+ +.|.+|+++.+.+..                  ..+                       
T Consensus         9 ~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~e   88 (540)
T 3gwf_A            9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQPE   88 (540)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHHH
Confidence            47999999999999999999 999999999986420                  000                       


Q ss_pred             ---------ccCCCCCCeeeccceeEEccCC-----cEEecCCcEEeecEEEEecCc--cCCCCC
Q 013303          236 ---------EKQPGYDNMWLHSMVERANEDG-----TVVFRNGRVVSADVIMHCTGY--KYNYPF  284 (446)
Q Consensus       236 ---------~~~~~~~~v~~~~~v~~i~~~~-----~v~~~dG~~~~~D~vi~atG~--~~~~~~  284 (446)
                               .+..-...+..+..|.++..++     .|.+.+|+++.+|.||+|||.  .|..|-
T Consensus        89 i~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~p~  153 (540)
T 3gwf_A           89 ILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINFPN  153 (540)
T ss_dssp             HHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCCCC
T ss_pred             HHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCCCC
Confidence                     0000001455567777775322     378889999999999999995  555443

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=97.43  E-value=0.00012  Score=74.32  Aligned_cols=88  Identities=15%  Similarity=0.096  Sum_probs=60.6

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc---------------------------c-----cc----------
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD---------------------------E-----TH----------  235 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~---------------------------~-----~~----------  235 (446)
                      .+|+|||+|.+|+-+|..|++.+.+|+++.+.+..                           .     ..          
T Consensus        10 ~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~ei   89 (545)
T 3uox_A           10 LDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQPEM   89 (545)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHHHH
Confidence            58999999999999999999999999999986420                           0     00          


Q ss_pred             --------ccCCCCCCeeeccceeEEccCC-----cEEecCCcEEeecEEEEecC--ccCCCCCC
Q 013303          236 --------EKQPGYDNMWLHSMVERANEDG-----TVVFRNGRVVSADVIMHCTG--YKYNYPFL  285 (446)
Q Consensus       236 --------~~~~~~~~v~~~~~v~~i~~~~-----~v~~~dG~~~~~D~vi~atG--~~~~~~~l  285 (446)
                              .+..-...+.++..|.++..+.     .|.+.+|+++.+|.||+|||  ..|..|-+
T Consensus        90 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~p~i  154 (545)
T 3uox_A           90 LRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRMPDI  154 (545)
T ss_dssp             HHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---CCC
T ss_pred             HHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcCCCC
Confidence                    0000001345566777775321     37888999999999999999  45555433

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=97.40  E-value=0.0004  Score=67.44  Aligned_cols=33  Identities=24%  Similarity=0.212  Sum_probs=30.6

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      -+|+|||+|++|+=+|..|++.|.+|+++.|.+
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~   34 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNS   34 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            379999999999999999999999999998754

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=97.38  E-value=0.00032  Score=68.41  Aligned_cols=36  Identities=17%  Similarity=0.138  Sum_probs=32.2

Q ss_pred             CCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       196 ~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      +..+|+|||+|++|+-+|..|++.|.+|+++.+.+.
T Consensus        22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~   57 (407)
T 3rp8_A           22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKE   57 (407)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            446899999999999999999999999999998763

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=97.36  E-value=0.00042  Score=67.37  Aligned_cols=34  Identities=24%  Similarity=0.273  Sum_probs=31.5

Q ss_pred             CCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       197 ~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      ..+|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~   38 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSP   38 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            3689999999999999999999999999998865

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.28  E-value=0.0011  Score=72.45  Aligned_cols=33  Identities=27%  Similarity=0.346  Sum_probs=30.4

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~   35 (446)
                      ++|+|||||..|+-+|..|++.|. +|+++++.+
T Consensus       333 ~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~  366 (1025)
T 1gte_A          333 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG  366 (1025)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CcEEEECCChHHHHHHHHHHHcCCCEEEEEEecC
Confidence            589999999999999999999996 899999864

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=97.28  E-value=0.00019  Score=73.01  Aligned_cols=35  Identities=26%  Similarity=0.552  Sum_probs=32.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~   36 (446)
                      .+|++|||||++|+++|..|++.|++|+|+|+...
T Consensus         7 ~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~   41 (546)
T 1kdg_A            7 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP   41 (546)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             ceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            47999999999999999999999999999999764

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=97.26  E-value=0.0002  Score=71.88  Aligned_cols=87  Identities=13%  Similarity=0.122  Sum_probs=61.8

Q ss_pred             CCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCcc-------------cc---------------------------
Q 013303          196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADE-------------TH---------------------------  235 (446)
Q Consensus       196 ~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~~-------------~~---------------------------  235 (446)
                      ...+|+|||+|++|+.+|..|++.|.+|+++.+.+...             .+                           
T Consensus        91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~  170 (497)
T 2bry_A           91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQL  170 (497)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHH
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHH
Confidence            45799999999999999999999999999999875300             00                           


Q ss_pred             ---ccCCC-CCCeeeccceeEEccC---C---cEEe--c-CC--cEEeecEEEEecCccCCC
Q 013303          236 ---EKQPG-YDNMWLHSMVERANED---G---TVVF--R-NG--RVVSADVIMHCTGYKYNY  282 (446)
Q Consensus       236 ---~~~~~-~~~v~~~~~v~~i~~~---~---~v~~--~-dG--~~~~~D~vi~atG~~~~~  282 (446)
                         +.+.+ ...+.....|.++..+   +   .|.+  . +|  .++.+|.||.|+|..+..
T Consensus       171 ~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~  232 (497)
T 2bry_A          171 LLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVP  232 (497)
T ss_dssp             HHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCC
T ss_pred             HHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCccc
Confidence               00001 1245556678888642   2   2556  3 56  468899999999998754

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=97.21  E-value=0.0012  Score=64.13  Aligned_cols=34  Identities=26%  Similarity=0.329  Sum_probs=31.5

Q ss_pred             CCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       197 ~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      ..+|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus        26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~   59 (398)
T 2xdo_A           26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDN   59 (398)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4689999999999999999999999999999864

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=97.13  E-value=0.00024  Score=71.89  Aligned_cols=35  Identities=26%  Similarity=0.504  Sum_probs=31.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHH-CCCcEEEEeeCCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLR-EGHTVVVYEKGEQ   36 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~-~g~~v~v~e~~~~   36 (446)
                      .+|++|||||+||+.+|..|++ .+++|+|+|++..
T Consensus        17 ~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~   52 (526)
T 3t37_A           17 NCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE   52 (526)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred             CeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence            3799999999999999999998 5789999999754

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=97.11  E-value=0.00021  Score=72.38  Aligned_cols=34  Identities=24%  Similarity=0.406  Sum_probs=31.9

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV   37 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~   37 (446)
                      +|++|||||+||+.+|..|++ |.+|+|+|++...
T Consensus        27 yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~   60 (536)
T 1ju2_A           27 YDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLP   60 (536)
T ss_dssp             EEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCG
T ss_pred             ccEEEECccHHHHHHHHHHhc-CCcEEEEecCCCc
Confidence            699999999999999999999 9999999998654

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=97.09  E-value=0.00064  Score=66.01  Aligned_cols=33  Identities=15%  Similarity=0.094  Sum_probs=30.6

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      .+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus         7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~   39 (399)
T 2x3n_A            7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQAR   39 (399)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            479999999999999999999999999998764

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.08  E-value=0.00039  Score=71.19  Aligned_cols=42  Identities=26%  Similarity=0.433  Sum_probs=39.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~   43 (446)
                      .+||+|||+|..|...|..|++.|.+|+++|+++.+||.|..
T Consensus         8 ~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~~~   49 (650)
T 1vg0_A            8 DFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWAS   49 (650)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCcccc
Confidence            579999999999999999999999999999999999998753

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=97.06  E-value=0.00026  Score=71.59  Aligned_cols=34  Identities=26%  Similarity=0.183  Sum_probs=31.4

Q ss_pred             CCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       197 ~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      .++|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus       107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~  140 (549)
T 3nlc_A          107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGK  140 (549)
T ss_dssp             CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccC
Confidence            4689999999999999999999999999999874

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=97.05  E-value=0.00079  Score=68.35  Aligned_cols=82  Identities=21%  Similarity=0.223  Sum_probs=58.2

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC----------c--------ccc--c-------------cC------
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----------D--------ETH--E-------------KQ------  238 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~----------~--------~~~--~-------------~~------  238 (446)
                      .+|+|||+|.+|+-+|..|++.|.+|+++.+.+.          +        ..+  .             ..      
T Consensus        17 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i   96 (542)
T 1w4x_A           17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI   96 (542)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHHHH
Confidence            4799999999999999999999999999987642          0        000  0             00      


Q ss_pred             --------CC---CCCeeeccceeEEccC---C--cEEecCCcEEeecEEEEecCcc
Q 013303          239 --------PG---YDNMWLHSMVERANED---G--TVVFRNGRVVSADVIMHCTGYK  279 (446)
Q Consensus       239 --------~~---~~~v~~~~~v~~i~~~---~--~v~~~dG~~~~~D~vi~atG~~  279 (446)
                              .+   ...+..+..|.++..+   +  .|.+.+|+++.+|.||.|||..
T Consensus        97 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~  153 (542)
T 1w4x_A           97 LRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQL  153 (542)
T ss_dssp             HHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSC
T ss_pred             HHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCC
Confidence                    00   0134455677776532   1  2777889899999999999963

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=97.00  E-value=0.00033  Score=68.60  Aligned_cols=33  Identities=21%  Similarity=0.266  Sum_probs=30.8

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      .+|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus        28 ~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~   60 (417)
T 3v76_A           28 QDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHAR   60 (417)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            479999999999999999999999999998865

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=96.97  E-value=0.00039  Score=70.87  Aligned_cols=35  Identities=29%  Similarity=0.411  Sum_probs=32.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCC-CcEEEEeeCCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQ   36 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g-~~v~v~e~~~~   36 (446)
                      .+|++|||||.||+++|..|++.+ .+|+|+|+...
T Consensus         6 ~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            6 HFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             EEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             cccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            479999999999999999999987 79999999865

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=96.95  E-value=0.00066  Score=68.24  Aligned_cols=37  Identities=24%  Similarity=0.336  Sum_probs=33.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG   38 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G   38 (446)
                      .+|++|||+|++|+.+|..|++.|.+|+|+|+....+
T Consensus         5 ~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~   41 (504)
T 1n4w_A            5 YVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWN   41 (504)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence            3699999999999999999999999999999987543

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=96.93  E-value=0.0017  Score=61.64  Aligned_cols=33  Identities=12%  Similarity=0.023  Sum_probs=30.0

Q ss_pred             CEEEEEecCCcHHHHHHHHhc---cCCEEEEEEecC
Q 013303          198 QVVILIGHYASGLDIKRDLAG---FAKEVHIASRSV  230 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~---~~~~V~l~~r~~  230 (446)
                      ++|+|||+|.+|+-+|..|++   .|.+|+++.++.
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~   37 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKAD   37 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSS
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCC
Confidence            379999999999999999999   899999998753

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=96.79  E-value=0.00066  Score=69.19  Aligned_cols=34  Identities=26%  Similarity=0.418  Sum_probs=31.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHC-CCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~-g~~v~v~e~~~   35 (446)
                      .+|++|||||.||+++|..|++. +.+|+|+|+..
T Consensus        19 ~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           19 TVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            37999999999999999999975 79999999987

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=96.79  E-value=0.00094  Score=67.17  Aligned_cols=35  Identities=29%  Similarity=0.374  Sum_probs=32.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~   36 (446)
                      .+|++|||+|++|+.+|..|++.|.+|+|+|+...
T Consensus        11 ~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~   45 (507)
T 1coy_A           11 RVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS   45 (507)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCC
Confidence            36999999999999999999999999999998754

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=96.72  E-value=0.00097  Score=65.14  Aligned_cols=33  Identities=18%  Similarity=0.136  Sum_probs=30.8

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      .+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus         6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~   38 (421)
T 3nix_A            6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQK   38 (421)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            479999999999999999999999999999865

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=96.67  E-value=0.00067  Score=68.99  Aligned_cols=36  Identities=36%  Similarity=0.394  Sum_probs=32.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHH-CCCcEEEEeeCCCc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLR-EGHTVVVYEKGEQV   37 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~-~g~~v~v~e~~~~~   37 (446)
                      .+|++|||||.||+.+|..|++ .+.+|+|+|+....
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~   38 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD   38 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence            5799999999999999999998 68999999997654

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=96.66  E-value=0.00097  Score=67.71  Aligned_cols=36  Identities=28%  Similarity=0.377  Sum_probs=32.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHC-CCcEEEEeeCCCc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQV   37 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~-g~~v~v~e~~~~~   37 (446)
                      .+|++|||||++|+++|..|++. |.+|+|+|+....
T Consensus        13 ~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~   49 (546)
T 2jbv_A           13 EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDD   49 (546)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcC
Confidence            36999999999999999999998 8999999998644

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=96.59  E-value=0.0021  Score=65.82  Aligned_cols=32  Identities=19%  Similarity=0.243  Sum_probs=30.2

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRS  229 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~  229 (446)
                      -.|+|||+|..|+++|..+++.|.+|.++.+.
T Consensus        29 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~   60 (651)
T 3ces_A           29 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHN   60 (651)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCEEEECChHHHHHHHHHHHhCCCCEEEEeec
Confidence            47999999999999999999999999999976

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=96.54  E-value=0.0017  Score=66.45  Aligned_cols=35  Identities=31%  Similarity=0.384  Sum_probs=32.1

Q ss_pred             CeEEEECcChHHHHHHHHHHH-CCCcEEEEeeCCCc
Q 013303            3 RHVAVIGAGAAGLVVGHELLR-EGHTVVVYEKGEQV   37 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~-~g~~v~v~e~~~~~   37 (446)
                      +|++|||||++|+++|..|++ .|.+|+|+|+....
T Consensus        25 ~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~   60 (587)
T 1gpe_A           25 YDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (587)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence            699999999999999999999 79999999997543

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=96.51  E-value=0.0023  Score=50.04  Aligned_cols=35  Identities=26%  Similarity=0.369  Sum_probs=31.7

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCC-CcEEEEeeCC
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGE   35 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g-~~v~v~e~~~   35 (446)
                      |+++|+|+|+|..|..++..|.+.| .+|+++++++
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            3578999999999999999999999 8999999864

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.49  E-value=0.00097  Score=58.88  Aligned_cols=76  Identities=7%  Similarity=0.085  Sum_probs=49.2

Q ss_pred             CCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCccccccCCCCCCeeeccceeEEccCCcEEecCCcEEeecEEE
Q 013303          194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIM  273 (446)
Q Consensus       194 ~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~~~~~~~~~~~~v~~~~~v~~i~~~~~v~~~dG~~~~~D~vi  273 (446)
                      ++++++|+|||+|.+|.--+..|.+.|.+|+++.+...+ .+..+...+.+.      -+...    |..+.--.+|.||
T Consensus        28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~-~l~~l~~~~~i~------~i~~~----~~~~dL~~adLVI   96 (223)
T 3dfz_A           28 DLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSA-EINEWEAKGQLR------VKRKK----VGEEDLLNVFFIV   96 (223)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCH-HHHHHHHTTSCE------EECSC----CCGGGSSSCSEEE
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCH-HHHHHHHcCCcE------EEECC----CCHhHhCCCCEEE
Confidence            357899999999999999999999999999999865431 122222112221      11110    1111112389999


Q ss_pred             EecCccC
Q 013303          274 HCTGYKY  280 (446)
Q Consensus       274 ~atG~~~  280 (446)
                      .|||-..
T Consensus        97 aAT~d~~  103 (223)
T 3dfz_A           97 VATNDQA  103 (223)
T ss_dssp             ECCCCTH
T ss_pred             ECCCCHH
Confidence            9998764

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=96.49  E-value=0.0015  Score=63.64  Aligned_cols=32  Identities=31%  Similarity=0.330  Sum_probs=30.2

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      +|+|||+|++|+-+|..+++.|.+|+++.+.+
T Consensus         6 dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~   37 (401)
T 2gqf_A            6 ENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGK   37 (401)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            69999999999999999999999999999865

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=96.44  E-value=0.0026  Score=64.89  Aligned_cols=32  Identities=16%  Similarity=0.178  Sum_probs=30.1

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRS  229 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~  229 (446)
                      -.|+|||+|..|++.|..+++.|.+|.++.+.
T Consensus        28 yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~   59 (637)
T 2zxi_A           28 FDVVVIGGGHAGIEAALAAARMGAKTAMFVLN   59 (637)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEEec
Confidence            46999999999999999999999999999976

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.41  E-value=0.0035  Score=50.98  Aligned_cols=34  Identities=32%  Similarity=0.408  Sum_probs=31.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      +++|+|+|+|..|..+|..|.+.|++|+++|+++
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            4689999999999999999999999999999864

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.41  E-value=0.0039  Score=50.74  Aligned_cols=34  Identities=29%  Similarity=0.531  Sum_probs=31.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      +.+|+|||+|..|...|+.|.+.|++|+++|+++
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~   40 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR   40 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            4689999999999999999999999999999865

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=96.33  E-value=0.0027  Score=61.38  Aligned_cols=32  Identities=28%  Similarity=0.237  Sum_probs=30.1

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      +|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus         4 dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   35 (394)
T 1k0i_A            4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (394)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            69999999999999999999999999999765

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=96.31  E-value=0.0052  Score=62.86  Aligned_cols=34  Identities=26%  Similarity=0.273  Sum_probs=31.6

Q ss_pred             CCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       197 ~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      ..+|+|||||.+|+-+|..|++.|.+|+++.+.+
T Consensus        23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~   56 (591)
T 3i3l_A           23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSA   56 (591)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCC
Confidence            4689999999999999999999999999999874

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=96.31  E-value=0.0035  Score=64.11  Aligned_cols=32  Identities=16%  Similarity=0.133  Sum_probs=30.4

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRS  229 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~  229 (446)
                      -.|+|||+|..|++.|..+++.|.+|.++.+.
T Consensus        22 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~   53 (641)
T 3cp8_A           22 YDVIVVGAGHAGCEAALAVARGGLHCLLITSD   53 (641)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEEec
Confidence            58999999999999999999999999999986

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.30  E-value=0.0044  Score=51.42  Aligned_cols=34  Identities=29%  Similarity=0.540  Sum_probs=31.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .++|+|||+|..|..+|..|.+.|.+|+++|+++
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~   52 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE   52 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            3689999999999999999999999999999864

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=96.09  E-value=0.0035  Score=61.93  Aligned_cols=33  Identities=27%  Similarity=0.188  Sum_probs=30.5

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      ..|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus        27 ~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~   59 (447)
T 2i0z_A           27 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGN   59 (447)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence            469999999999999999999999999999765

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=96.07  E-value=0.029  Score=51.34  Aligned_cols=144  Identities=16%  Similarity=0.229  Sum_probs=84.1

Q ss_pred             CCCCEEEEEecCCcHHHHHHHHhccCC-EEEEEEecCCccccccCCCCCCeeeccceeEEccCCcEEecCCcEEeecEEE
Q 013303          195 FQDQVVILIGHYASGLDIKRDLAGFAK-EVHIASRSVADETHEKQPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIM  273 (446)
Q Consensus       195 ~~~k~VvVVG~G~sg~eia~~l~~~~~-~V~l~~r~~~~~~~~~~~~~~~v~~~~~v~~i~~~~~v~~~dG~~~~~D~vi  273 (446)
                      ..+++++|+|+|-.|.-++..|.+.|. +|+++.|+...  .+.+.+.  +.    ...+..     +.+   +++|.||
T Consensus       120 ~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~k--a~~La~~--~~----~~~~~~-----l~~---l~~DivI  183 (282)
T 3fbt_A          120 IKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEK--TSEIYGE--FK----VISYDE-----LSN---LKGDVII  183 (282)
T ss_dssp             CTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHH--HHHHCTT--SE----EEEHHH-----HTT---CCCSEEE
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHH--HHHHHHh--cC----cccHHH-----HHh---ccCCEEE
Confidence            468999999999999999999999986 89999987641  1111111  10    011110     112   2799999


Q ss_pred             Eec--CccCCC---CCCCCCCeeeeCCCCcccccccccCCCCCCCeE-----EecCCCccCchhHHHHHHHHHHHHHcCC
Q 013303          274 HCT--GYKYNY---PFLETNGIVTVDDNRVGPLYKHVFPPVLAPGLS-----FVGIPQKVIPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       274 ~at--G~~~~~---~~l~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~-----~iG~~~~~~~~~~~~~qa~~~a~~l~g~  343 (446)
                      -||  |..|+.   | ++.. .+  ....  -+|+-++.|.  ++-+     ..|.. ......|...||...-+.|.|.
T Consensus       184 naTp~Gm~~~~~~~p-i~~~-~l--~~~~--~v~DlvY~P~--~T~ll~~A~~~G~~-~~~Gl~MLv~Qa~~~f~lwtg~  254 (282)
T 3fbt_A          184 NCTPKGMYPKEGESP-VDKE-VV--AKFS--SAVDLIYNPV--ETLFLKYARESGVK-AVNGLYMLVSQAAASEEIWNDI  254 (282)
T ss_dssp             ECSSTTSTTSTTCCS-SCHH-HH--TTCS--EEEESCCSSS--SCHHHHHHHHTTCE-EECSHHHHHHHHHHHHHHHHTC
T ss_pred             ECCccCccCCCccCC-CCHH-Hc--CCCC--EEEEEeeCCC--CCHHHHHHHHCcCe-EeCcHHHHHHHHHHHHHHHcCC
Confidence            999  555542   2 2110 00  0000  0222222222  1111     11321 2345688899999999999996


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHH
Q 013303          344 IVLPSQDEMMEDVKAFYSKLEA  365 (446)
Q Consensus       344 ~~lp~~~~m~~~~~~~~~~~~~  365 (446)
                      .  |+.+.|.+.+.+.....++
T Consensus       255 ~--~~~~~~~~~~~~~~~~~~~  274 (282)
T 3fbt_A          255 S--IDEIIVDEIFEVLEEKIKS  274 (282)
T ss_dssp             C--CCHHHHHHHHHHHHHHHHC
T ss_pred             C--CCHHHHHHHHHHHHHhhhc
Confidence            3  6678888777665555543

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=96.05  E-value=0.02  Score=57.37  Aligned_cols=34  Identities=18%  Similarity=0.336  Sum_probs=29.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~   35 (446)
                      .|+|+|||+|.+|.-++..|++.  +.+|+++-|+.
T Consensus       246 gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~  281 (501)
T 4b63_A          246 PYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDS  281 (501)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSS
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCC
Confidence            47899999999999999999875  67899998865

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=96.04  E-value=0.0032  Score=63.05  Aligned_cols=85  Identities=16%  Similarity=0.194  Sum_probs=55.4

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc--cc---------------------cccCCCCCCe--eeccceeE
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD--ET---------------------HEKQPGYDNM--WLHSMVER  252 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~--~~---------------------~~~~~~~~~v--~~~~~v~~  252 (446)
                      .+|+|||+|++|+-.|..|++. .+|+++.+.+..  ..                     ...+  ..++  .....+..
T Consensus       109 ~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l--~~~v~~~~~~~v~~  185 (493)
T 1y56_A          109 VDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKL--NENTKIYLETSALG  185 (493)
T ss_dssp             ESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTC--CTTEEEETTEEECC
T ss_pred             CCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHH--hcCCEEEcCCEEEE
Confidence            4799999999999999999999 999999986531  00                     0111  1122  23334444


Q ss_pred             EccCCc-EEe---cCCc--EEeecEEEEecCccCCCCCC
Q 013303          253 ANEDGT-VVF---RNGR--VVSADVIMHCTGYKYNYPFL  285 (446)
Q Consensus       253 i~~~~~-v~~---~dG~--~~~~D~vi~atG~~~~~~~l  285 (446)
                      +..++. +..   .+++  ++.+|.+|+|||..+..+-+
T Consensus       186 i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~~~  224 (493)
T 1y56_A          186 VFDKGEYFLVPVVRGDKLIEILAKRVVLATGAIDSTMLF  224 (493)
T ss_dssp             CEECSSSEEEEEEETTEEEEEEESCEEECCCEEECCCCC
T ss_pred             EEcCCcEEEEEEecCCeEEEEECCEEEECCCCCccCCCC
Confidence            433322 222   4554  57899999999998775533

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=96.03  E-value=0.0054  Score=61.65  Aligned_cols=33  Identities=21%  Similarity=0.179  Sum_probs=31.0

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      .+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus         8 ~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~   40 (512)
T 3e1t_A            8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREA   40 (512)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCEEEEccCC
Confidence            479999999999999999999999999999875

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.03  E-value=0.0072  Score=48.75  Aligned_cols=33  Identities=21%  Similarity=0.485  Sum_probs=30.8

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      ++|+|||+|..|...|..|.+.|++|+++|+++
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            589999999999999999999999999999854

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=95.96  E-value=0.0095  Score=49.17  Aligned_cols=33  Identities=21%  Similarity=0.189  Sum_probs=31.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG   34 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~   34 (446)
                      .++|+|+|+|..|...|..|.+.|++|+++|+.
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~   35 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNL   35 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence            468999999999999999999999999999985

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=95.92  E-value=0.0074  Score=48.87  Aligned_cols=34  Identities=38%  Similarity=0.502  Sum_probs=31.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      +++|+|+|+|..|..+|..|.+.|.+|+++|+.+
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4579999999999999999999999999999853

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=95.88  E-value=0.0079  Score=58.51  Aligned_cols=33  Identities=18%  Similarity=0.154  Sum_probs=30.8

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCE-EEEEEecC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKE-VHIASRSV  230 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~-V~l~~r~~  230 (446)
                      .+|+|||+|++|+-+|..|++.|.+ |+++.+.+
T Consensus         5 ~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~   38 (410)
T 3c96_A            5 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSS   38 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            4799999999999999999999999 99999865

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=95.86  E-value=0.0079  Score=60.25  Aligned_cols=35  Identities=23%  Similarity=0.264  Sum_probs=31.8

Q ss_pred             CCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       197 ~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      ..+|+|||+|++|+-+|..|++.|.+|+++.+.+.
T Consensus        12 ~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~   46 (499)
T 2qa2_A           12 DASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQ   46 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            35899999999999999999999999999998653

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=95.85  E-value=0.005  Score=60.85  Aligned_cols=32  Identities=16%  Similarity=0.171  Sum_probs=30.2

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      +|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus         8 dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~   39 (453)
T 3atr_A            8 DVLIIGGGFAGSSAAYQLSRRGLKILLVDSKP   39 (453)
T ss_dssp             SEEEECCSHHHHHHHHHHSSSSCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            69999999999999999999999999999865

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=95.78  E-value=0.0071  Score=60.59  Aligned_cols=34  Identities=26%  Similarity=0.340  Sum_probs=31.3

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      ..|+|||+|++|+-+|..|++.|.+|+++.+.+.
T Consensus        12 ~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~   45 (500)
T 2qa1_A           12 AAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVE   45 (500)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            5799999999999999999999999999998653

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=95.77  E-value=0.0053  Score=62.55  Aligned_cols=34  Identities=18%  Similarity=0.215  Sum_probs=30.7

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      ..|+|||+|++|+-+|..|++.|.+|+++.+.+.
T Consensus        50 ~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~   83 (570)
T 3fmw_A           50 TDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVE   83 (570)
T ss_dssp             -CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence            4699999999999999999999999999998653

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=95.62  E-value=0.011  Score=55.59  Aligned_cols=35  Identities=37%  Similarity=0.571  Sum_probs=31.4

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      |+++|+|||+|.-|.+.|..|++.|.+|+++++++
T Consensus         1 M~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            1 MSLNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             --CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            67899999999999999999999999999999864

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=95.39  E-value=0.012  Score=55.04  Aligned_cols=35  Identities=37%  Similarity=0.545  Sum_probs=30.4

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      |+++|+|||+|.-|.+.|..|++.|.+|+++++++
T Consensus         1 M~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            1 MSLRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             ---CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            66899999999999999999999999999999864

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=95.39  E-value=0.013  Score=48.58  Aligned_cols=48  Identities=13%  Similarity=0.205  Sum_probs=33.8

Q ss_pred             EEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          184 MHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       184 ~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      +|.+....++...+++|+|+|+|..|..+|..|...|.+|+++.+++.
T Consensus         6 ~~~~~~~~~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~   53 (155)
T 2g1u_A            6 IHHHHHHMSKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY   53 (155)
T ss_dssp             -----------CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             hhhhhhhhhcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            344444455666789999999999999999999999999999988754

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.34  E-value=0.016  Score=49.40  Aligned_cols=33  Identities=27%  Similarity=0.315  Sum_probs=30.8

Q ss_pred             CeEEEECcChHHHHHHHHHHHC-CCcEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLRE-GHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~-g~~v~v~e~~~   35 (446)
                      .+|+|||+|..|..+|+.|.+. |++|+++|+++
T Consensus        40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           40 AQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            4799999999999999999999 99999999864

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=95.32  E-value=0.015  Score=57.28  Aligned_cols=35  Identities=29%  Similarity=0.391  Sum_probs=32.1

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      |+++|+|||+|.-|+..|..|++.|++|+++|+++
T Consensus         1 M~mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~   35 (450)
T 3gg2_A            1 MSLDIAVVGIGYVGLVSATCFAELGANVRCIDTDR   35 (450)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence            56799999999999999999999999999999864

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=95.28  E-value=0.015  Score=51.20  Aligned_cols=33  Identities=27%  Similarity=0.337  Sum_probs=31.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG   34 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~   34 (446)
                      .++|+|||||..|...|+.|.+.|.+|+|+++.
T Consensus        31 gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           31 GRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             TCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            478999999999999999999999999999874

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=95.27  E-value=0.011  Score=58.00  Aligned_cols=34  Identities=29%  Similarity=0.350  Sum_probs=31.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .++|+|||.|.+|+++|+.|+++|++|+++|...
T Consensus         5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~   38 (439)
T 2x5o_A            5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRM   38 (439)
T ss_dssp             TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSS
T ss_pred             CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCC
Confidence            4789999999999999999999999999999865

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.26  E-value=0.015  Score=57.38  Aligned_cols=34  Identities=24%  Similarity=0.302  Sum_probs=31.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .++|+|||.|.+|+++|+.|++.|++|+++|...
T Consensus         9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A            9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            4789999999999999999999999999999864

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=95.26  E-value=0.0078  Score=54.09  Aligned_cols=32  Identities=25%  Similarity=0.417  Sum_probs=30.1

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      .|+|||+|++|+-+|..|++.|.+|+++.+++
T Consensus         4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~   35 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR   35 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            59999999999999999999999999999765

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=95.13  E-value=0.015  Score=53.78  Aligned_cols=35  Identities=29%  Similarity=0.365  Sum_probs=31.1

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      |+++|+|||+|.-|.+.|..|++.|.+|++++++.
T Consensus         1 M~mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            1 MSLSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            67899999999999999999999999999999863

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=95.03  E-value=0.02  Score=50.34  Aligned_cols=33  Identities=21%  Similarity=0.355  Sum_probs=30.7

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      ++|+|||+|..|...|+.|.+.|++|+++|+++
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~   33 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDR   33 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            379999999999999999999999999999864

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=94.98  E-value=0.018  Score=52.46  Aligned_cols=33  Identities=21%  Similarity=0.374  Sum_probs=31.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG   34 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~   34 (446)
                      .++|+|||||..|...++.|.+.|.+|+|+++.
T Consensus        13 ~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~   45 (274)
T 1kyq_A           13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (274)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence            478999999999999999999999999999974

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=94.93  E-value=0.024  Score=54.44  Aligned_cols=34  Identities=29%  Similarity=0.303  Sum_probs=31.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      ..+|+|||+|+.|+.+|+.|...|.+|+++|+..
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  223 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARRLGAVVSATDVRP  223 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSST
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3589999999999999999999999999999875

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=94.86  E-value=0.027  Score=51.79  Aligned_cols=34  Identities=24%  Similarity=0.463  Sum_probs=31.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .++|+|||+|.-|...|..|++.|++|+++|+++
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT   37 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            3689999999999999999999999999999864

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=94.85  E-value=0.024  Score=52.67  Aligned_cols=34  Identities=29%  Similarity=0.425  Sum_probs=30.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      +++|+|||+|.-|...|..|++.|++|+++++++
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            3 AMKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            5689999999999999999999999999999853

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=94.82  E-value=0.028  Score=52.13  Aligned_cols=34  Identities=38%  Similarity=0.620  Sum_probs=31.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      +++|+|||+|.-|...|..|++.|++|+++|+++
T Consensus        15 ~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   48 (302)
T 1f0y_A           15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   48 (302)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            4689999999999999999999999999999864

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=94.75  E-value=0.031  Score=53.30  Aligned_cols=35  Identities=20%  Similarity=0.376  Sum_probs=32.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~   36 (446)
                      ||+|+|||||..|..+++.+.+.|++++++|..+.
T Consensus         1 MK~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~   35 (363)
T 4ffl_A            1 MKTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ   35 (363)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            68999999999999999999999999999997653

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=94.71  E-value=0.031  Score=52.08  Aligned_cols=33  Identities=21%  Similarity=0.354  Sum_probs=31.0

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .+|+|||||.-|...|..++..|++|+++|..+
T Consensus         7 ~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~   39 (319)
T 3ado_A            7 GDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP   39 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence            589999999999999999999999999999864

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=94.66  E-value=0.035  Score=48.49  Aligned_cols=35  Identities=29%  Similarity=0.551  Sum_probs=31.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~   36 (446)
                      .++|+|||+|.-|.+.|..|++.|++|+++++++.
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            46899999999999999999999999999998653

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=94.66  E-value=0.035  Score=52.20  Aligned_cols=34  Identities=24%  Similarity=0.380  Sum_probs=31.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~   35 (446)
                      +++|+|||||..|.+.|..|+..|+ +|+++|..+
T Consensus        14 ~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~   48 (328)
T 2hjr_A           14 RKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE   48 (328)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence            4689999999999999999999998 999999864

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=94.63  E-value=0.026  Score=53.82  Aligned_cols=34  Identities=26%  Similarity=0.283  Sum_probs=31.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      ..+|+|||+|..|+.+|+.|...|.+|+++|++.
T Consensus       184 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  217 (381)
T 3p2y_A          184 PASALVLGVGVAGLQALATAKRLGAKTTGYDVRP  217 (381)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred             CCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999999999999999999999999864

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=94.60  E-value=0.035  Score=51.73  Aligned_cols=35  Identities=29%  Similarity=0.436  Sum_probs=31.0

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~   35 (446)
                      |+++|+|||||..|...|..|+..|+ +|+++|..+
T Consensus         1 M~~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~   36 (309)
T 1ur5_A            1 MRKKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   36 (309)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence            56799999999999999999999996 899999754

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=94.56  E-value=0.032  Score=51.95  Aligned_cols=34  Identities=29%  Similarity=0.429  Sum_probs=30.9

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      |+++|+|||+|.-|.+.|..|+ .|.+|+++++++
T Consensus         1 M~mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~   34 (307)
T 3ego_A            1 MSLKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ   34 (307)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence            6789999999999999999999 999999999864

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=94.54  E-value=0.027  Score=51.53  Aligned_cols=35  Identities=17%  Similarity=0.285  Sum_probs=32.0

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      |+++|+|+|||..|...+..|++.|++|+++.|..
T Consensus         4 m~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   38 (286)
T 3ius_A            4 MTGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP   38 (286)
T ss_dssp             -CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred             CcCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence            57899999999999999999999999999999864

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=94.43  E-value=0.015  Score=57.39  Aligned_cols=77  Identities=22%  Similarity=0.324  Sum_probs=52.8

Q ss_pred             CCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC--ccccccCCCCCCeeeccceeEEccCCcEEecCC---c-E
Q 013303          193 NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA--DETHEKQPGYDNMWLHSMVERANEDGTVVFRNG---R-V  266 (446)
Q Consensus       193 ~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~--~~~~~~~~~~~~v~~~~~v~~i~~~~~v~~~dG---~-~  266 (446)
                      .++++|+|+|||.|.+|+-+|..|.+.|.+|+.+.++..  ......+.               ..+ +.+..|   . .
T Consensus         5 ~~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~---------------~~g-i~~~~g~~~~~~   68 (451)
T 3lk7_A            5 TTFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLL---------------EEG-IKVVCGSHPLEL   68 (451)
T ss_dssp             CTTTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHH---------------HTT-CEEEESCCCGGG
T ss_pred             hhcCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHH---------------hCC-CEEEECCChHHh
Confidence            346789999999999999999999999999999987542  11111111               111 111111   1 1


Q ss_pred             -Ee-ecEEEEecCccCCCCCC
Q 013303          267 -VS-ADVIMHCTGYKYNYPFL  285 (446)
Q Consensus       267 -~~-~D~vi~atG~~~~~~~l  285 (446)
                       -. +|.||.++|..++.|.+
T Consensus        69 ~~~~~d~vv~spgi~~~~p~~   89 (451)
T 3lk7_A           69 LDEDFCYMIKNPGIPYNNPMV   89 (451)
T ss_dssp             GGSCEEEEEECTTSCTTSHHH
T ss_pred             hcCCCCEEEECCcCCCCChhH
Confidence             13 89999999999887764

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=94.40  E-value=0.038  Score=50.27  Aligned_cols=37  Identities=22%  Similarity=0.297  Sum_probs=33.7

Q ss_pred             CCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       194 ~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      +++|++|+|||+|.+|.--+..|.+.|.+|+++....
T Consensus        10 ~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           10 QLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             CCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             EcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            3478999999999999999999999999999998754

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=94.37  E-value=0.014  Score=58.33  Aligned_cols=33  Identities=18%  Similarity=0.168  Sum_probs=30.4

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      |+|+|||+|.+|+-.|..|++.|.+|+++.+++
T Consensus         2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~   34 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRD   34 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCC
Confidence            689999999999999999999999999998764

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=94.32  E-value=0.035  Score=54.15  Aligned_cols=34  Identities=29%  Similarity=0.469  Sum_probs=31.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      +.+|+|||.|..||.+|..|++.|++|+.||..+
T Consensus        21 m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~   54 (444)
T 3vtf_A           21 MASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNP   54 (444)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            5789999999999999999999999999999764

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=94.27  E-value=0.042  Score=51.38  Aligned_cols=34  Identities=29%  Similarity=0.439  Sum_probs=31.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC--cEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~--~v~v~e~~~   35 (446)
                      +++|+|||+|..|...|..|++.|+  +|+++|+..
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            4689999999999999999999998  999999853

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=94.23  E-value=0.035  Score=52.78  Aligned_cols=32  Identities=38%  Similarity=0.541  Sum_probs=30.2

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCC-cEEEEeeC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG   34 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~   34 (446)
                      .+|+|+|||.+|+.+|+.|...|. +|+++|+.
T Consensus       189 ~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~  221 (398)
T 2a9f_A          189 VSIVVNGGGSAGLSITRKLLAAGATKVTVVDKF  221 (398)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            589999999999999999999998 99999985

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=94.23  E-value=0.042  Score=54.29  Aligned_cols=35  Identities=14%  Similarity=0.381  Sum_probs=32.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHC-CC-cEEEEeeCCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLRE-GH-TVVVYEKGEQ   36 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~-g~-~v~v~e~~~~   36 (446)
                      .++|+|||+|.-|+..|..|++. |+ +|+++|+++.
T Consensus        18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            46899999999999999999999 99 9999999765

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=94.22  E-value=0.041  Score=54.55  Aligned_cols=34  Identities=32%  Similarity=0.561  Sum_probs=31.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .++|+|||+|.-|+..|..|++.|++|+++|+++
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~   41 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ   41 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            4789999999999999999999999999999864

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=94.22  E-value=0.023  Score=55.59  Aligned_cols=34  Identities=15%  Similarity=0.201  Sum_probs=31.4

Q ss_pred             CCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       197 ~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      .++|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            3689999999999999999999999999999876

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=94.20  E-value=0.047  Score=50.04  Aligned_cols=33  Identities=27%  Similarity=0.419  Sum_probs=30.6

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      ++|+|||+|.-|...|..|++.|++|+++++++
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   33 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVP   33 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCc
Confidence            379999999999999999999999999999865

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=94.19  E-value=0.043  Score=51.62  Aligned_cols=33  Identities=30%  Similarity=0.415  Sum_probs=30.6

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~   35 (446)
                      ++|+|||||..|.+.|..|++.|+ +|+++|..+
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~   43 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   43 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence            589999999999999999999998 999999864

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=94.16  E-value=0.038  Score=51.67  Aligned_cols=35  Identities=23%  Similarity=0.302  Sum_probs=32.2

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCC-CcEEEEeeCC
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGE   35 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g-~~v~v~e~~~   35 (446)
                      |+++|.|||+|.-|...|..|++.| ++|++++++.
T Consensus        23 M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           23 MMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             cCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            4578999999999999999999999 9999999864

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=94.14  E-value=0.046  Score=51.53  Aligned_cols=35  Identities=29%  Similarity=0.482  Sum_probs=31.7

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      |..+|+|||+|.-|.+.|..|++.|++|+++++++
T Consensus        13 ~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~   47 (335)
T 1z82_A           13 MEMRFFVLGAGSWGTVFAQMLHENGEEVILWARRK   47 (335)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             cCCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            46799999999999999999999999999999853

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=94.13  E-value=0.043  Score=53.10  Aligned_cols=34  Identities=32%  Similarity=0.346  Sum_probs=31.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      ..+|+|||+|.+|+.+++.|...|.+|+++|++.
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~  205 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRP  205 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            4689999999999999999999999999999864

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=94.12  E-value=0.046  Score=50.92  Aligned_cols=34  Identities=26%  Similarity=0.516  Sum_probs=31.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      +++|.|||.|.-|...|..|++.|++|+++++++
T Consensus        21 m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~   54 (310)
T 3doj_A           21 MMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTL   54 (310)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            4789999999999999999999999999999864

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=94.12  E-value=0.019  Score=46.73  Aligned_cols=34  Identities=12%  Similarity=0.086  Sum_probs=30.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .++|+|||+|..|...+..|.+.|.+|++++++.
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~   54 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI   54 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            4689999999999999999999999999999864

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=94.11  E-value=0.048  Score=50.56  Aligned_cols=34  Identities=24%  Similarity=0.336  Sum_probs=31.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      +++|.|||+|.-|...|..|++.|++|+++++++
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   40 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP   40 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            4689999999999999999999999999999864

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=94.10  E-value=0.035  Score=51.38  Aligned_cols=34  Identities=21%  Similarity=0.225  Sum_probs=31.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      +++|.|||.|.-|...|..|++.|++|+++|+++
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~   48 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRI   48 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSST
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            3589999999999999999999999999999865

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=94.08  E-value=0.055  Score=48.48  Aligned_cols=34  Identities=26%  Similarity=0.412  Sum_probs=31.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .++|.|||+|.-|.+.|..|++.|++|+++++++
T Consensus        19 ~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~   52 (245)
T 3dtt_A           19 GMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDP   52 (245)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            5789999999999999999999999999999864

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=94.04  E-value=0.05  Score=51.05  Aligned_cols=34  Identities=18%  Similarity=0.272  Sum_probs=30.9

Q ss_pred             CCeEEEECcChHHHH-HHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLV-VGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~-aA~~l~~~g~~v~v~e~~~   35 (446)
                      +++|.|||.|.+|++ +|+.|++.|++|++.|+..
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~   38 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKM   38 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            578999999999996 7888999999999999864

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=94.01  E-value=0.049  Score=50.91  Aligned_cols=34  Identities=29%  Similarity=0.459  Sum_probs=31.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~   35 (446)
                      +++|+|||+|..|.+.|..|++.|+ +|+++|+.+
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~   38 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE   38 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence            3689999999999999999999998 999999864

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=93.99  E-value=0.048  Score=51.81  Aligned_cols=33  Identities=36%  Similarity=0.375  Sum_probs=30.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG   34 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~   34 (446)
                      ..+|+|+|||.+|..+|+.|...|. +|+++|+.
T Consensus       192 ~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          192 EVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            4689999999999999999999998 79999986

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=93.98  E-value=0.053  Score=51.10  Aligned_cols=33  Identities=30%  Similarity=0.619  Sum_probs=30.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG   34 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~   34 (446)
                      +++|+|||+|.-|.+.|..|++.|++|+++++.
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            468999999999999999999999999999984

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=93.90  E-value=0.041  Score=50.95  Aligned_cols=35  Identities=29%  Similarity=0.516  Sum_probs=29.7

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      |.++|.+||-|.-|...|+.|++.|++|+++|++.
T Consensus         4 Ms~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~   38 (297)
T 4gbj_A            4 MSEKIAFLGLGNLGTPIAEILLEAGYELVVWNRTA   38 (297)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHHTTCEEEEC----
T ss_pred             CCCcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            56789999999999999999999999999999865

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=93.90  E-value=0.058  Score=51.92  Aligned_cols=34  Identities=29%  Similarity=0.296  Sum_probs=31.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      ..+|+|||+|.+|+.++..+...|.+|+++|+.+
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~  205 (384)
T 1l7d_A          172 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA  205 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999999999999999999999999864

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=93.82  E-value=0.056  Score=51.40  Aligned_cols=34  Identities=26%  Similarity=0.452  Sum_probs=31.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      +++|+|||+|.-|.+.|..|++.|++|+++++++
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~   62 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYES   62 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            3589999999999999999999999999999864

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=93.78  E-value=0.065  Score=48.02  Aligned_cols=35  Identities=14%  Similarity=0.373  Sum_probs=32.3

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCC----cEEEEeeCC
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGH----TVVVYEKGE   35 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~----~v~v~e~~~   35 (446)
                      |+++|.|||+|.-|.+.|..|.+.|+    +|+++++++
T Consensus         1 M~~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~   39 (247)
T 3gt0_A            1 MDKQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNT   39 (247)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCH
T ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCH
Confidence            56899999999999999999999998    999999864

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=93.77  E-value=0.065  Score=51.05  Aligned_cols=34  Identities=18%  Similarity=0.330  Sum_probs=31.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .++|+|+|+|.+|+.++..|+..|.+|+++++++
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            3689999999999999999999999999999864

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=93.76  E-value=0.043  Score=50.44  Aligned_cols=34  Identities=24%  Similarity=0.471  Sum_probs=31.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      |++|.|||.|.-|...|..|++.|++|+++++++
T Consensus         1 M~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~   34 (287)
T 3pdu_A            1 MTTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNP   34 (287)
T ss_dssp             CCCEEEECCSTTHHHHHHHHHHHTCCEEEECSSG
T ss_pred             CCeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            4689999999999999999999999999999864

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=93.65  E-value=0.036  Score=48.81  Aligned_cols=34  Identities=24%  Similarity=0.445  Sum_probs=30.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEE-EeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVV-YEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v-~e~~~   35 (446)
                      +++|+|||+|.-|.+.|..|++.|++|++ +++++
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~   57 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGP   57 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCH
Confidence            46899999999999999999999999998 77754

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=93.63  E-value=0.048  Score=52.26  Aligned_cols=36  Identities=11%  Similarity=0.189  Sum_probs=32.3

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCC-------CcEEEEeeCCC
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREG-------HTVVVYEKGEQ   36 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g-------~~v~v~e~~~~   36 (446)
                      |+++|+|||+|.-|.+.|..|++.|       ++|+++++++.
T Consensus        20 ~~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           20 GPLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             SCBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            3568999999999999999999999       99999998654

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=93.59  E-value=0.064  Score=49.25  Aligned_cols=34  Identities=21%  Similarity=0.512  Sum_probs=31.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      +++|.|||+|.-|...|..|++.|++|+++++++
T Consensus         1 s~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   34 (287)
T 3pef_A            1 SQKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSP   34 (287)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            3689999999999999999999999999999864

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=93.55  E-value=0.076  Score=46.49  Aligned_cols=34  Identities=24%  Similarity=0.386  Sum_probs=30.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      +++|+|||+|..|...|..|++.|++|++++++.
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~   61 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRNP   61 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3579999999999999999999999999999864

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=93.52  E-value=0.059  Score=49.73  Aligned_cols=35  Identities=31%  Similarity=0.518  Sum_probs=30.6

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      |+++|+|||+|..|...|..|.+.|++|++++++.
T Consensus         4 M~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   38 (299)
T 1vpd_A            4 MTMKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   38 (299)
T ss_dssp             --CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ccceEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            34689999999999999999999999999999853

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=93.52  E-value=0.069  Score=50.65  Aligned_cols=33  Identities=24%  Similarity=0.458  Sum_probs=30.7

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      ++|+|||+|..|...|..|++.|++|+++++++
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~   37 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   37 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            589999999999999999999999999999853

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=93.51  E-value=0.063  Score=48.23  Aligned_cols=32  Identities=19%  Similarity=0.367  Sum_probs=30.0

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCC-cEEEEeeC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG   34 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~   34 (446)
                      ++|+|||+|-.|..+|..|++.|. +++++|+.
T Consensus        32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d   64 (249)
T 1jw9_B           32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   64 (249)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            689999999999999999999997 89999985

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=93.51  E-value=0.1  Score=51.90  Aligned_cols=57  Identities=16%  Similarity=0.004  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHhC-CCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCC
Q 013303          103 EEVLRYLQNFAREFG-VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFS  166 (446)
Q Consensus       103 ~~v~~yl~~~~~~~~-l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s  166 (446)
                      ..+.+.|.+.+...+ +.  |+++++|++|+..+ +.++|++.++.    ++.||+||+|+|...
T Consensus       255 ~~l~~~l~~~l~~~g~~~--i~~~~~V~~i~~~~-~~v~v~~~~g~----~~~ad~vI~a~~~~~  312 (495)
T 2vvm_A          255 SAFARRFWEEAAGTGRLG--YVFGCPVRSVVNER-DAARVTARDGR----EFVAKRVVCTIPLNV  312 (495)
T ss_dssp             HHHHHHHHHHHHTTTCEE--EESSCCEEEEEECS-SSEEEEETTCC----EEEEEEEEECCCGGG
T ss_pred             HHHHHHHHHHhhhcCceE--EEeCCEEEEEEEcC-CEEEEEECCCC----EEEcCEEEECCCHHH
Confidence            455555555555555 54  89999999999876 66887765543    689999999999643

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=93.49  E-value=0.076  Score=48.72  Aligned_cols=34  Identities=24%  Similarity=0.411  Sum_probs=31.2

Q ss_pred             CCeEEEECc-ChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      +++|+|||+ |.-|...|..|++.|++|++++++.
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~   45 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAP   45 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            468999999 9999999999999999999999853

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=93.42  E-value=0.07  Score=49.13  Aligned_cols=33  Identities=33%  Similarity=0.425  Sum_probs=30.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .++|.|||+|.-|...|..|+ .|++|+++|+++
T Consensus        12 ~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~   44 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE   44 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence            478999999999999999999 999999999864

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=93.39  E-value=0.078  Score=52.00  Aligned_cols=35  Identities=26%  Similarity=0.346  Sum_probs=32.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~   36 (446)
                      .++|+|||+|.-|...|..|++.|++|+++|+++.
T Consensus        54 i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           54 VNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            36899999999999999999999999999998753

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=93.35  E-value=0.071  Score=49.84  Aligned_cols=34  Identities=24%  Similarity=0.524  Sum_probs=31.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      +++|.|||+|.-|...|..|++.|++|+++++++
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   64 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAGYALQVWNRTP   64 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCH
Confidence            3589999999999999999999999999999864

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=93.35  E-value=0.069  Score=51.94  Aligned_cols=33  Identities=27%  Similarity=0.477  Sum_probs=30.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      +++|+|||+|.-|+..|..|++ |++|+++|+.+
T Consensus        36 ~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~   68 (432)
T 3pid_A           36 FMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQ   68 (432)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCH
Confidence            3589999999999999999998 99999999864

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=93.33  E-value=0.077  Score=49.07  Aligned_cols=34  Identities=15%  Similarity=0.412  Sum_probs=31.1

Q ss_pred             CCeEEEEC-cChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIG-AGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIG-aG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      +++|+||| +|.-|.+.|..|++.|++|+++++++
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~   55 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDRED   55 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence            46899999 99999999999999999999998754

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=93.31  E-value=0.099  Score=47.73  Aligned_cols=34  Identities=24%  Similarity=0.498  Sum_probs=31.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      +++|+|.|+|..|...+..|++.|++|+++.+..
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   36 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSA   36 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTT
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4689999999999999999999999999999864

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=93.31  E-value=0.039  Score=52.79  Aligned_cols=32  Identities=16%  Similarity=0.218  Sum_probs=30.1

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      .|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus         6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~   37 (397)
T 3oz2_A            6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRP   37 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            59999999999999999999999999999865

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=93.30  E-value=0.076  Score=52.01  Aligned_cols=35  Identities=37%  Similarity=0.543  Sum_probs=32.2

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV   37 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~   37 (446)
                      -+++|||.|.-|+..|..|++.|++|+++|+++..
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~k   43 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARK   43 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTT
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            58999999999999999999999999999997643

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=93.26  E-value=0.097  Score=47.45  Aligned_cols=34  Identities=24%  Similarity=0.529  Sum_probs=31.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .++|+|||+|-+|.+++..|++.|.+|+|+.|+.
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~  151 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSS  151 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3689999999999999999999999999999864

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=93.24  E-value=0.089  Score=49.22  Aligned_cols=34  Identities=18%  Similarity=0.395  Sum_probs=30.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~   35 (446)
                      +++|+|||||..|..+|..|+..|+ +|+++|..+
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~   38 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   38 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence            4689999999999999999999998 999999754

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=93.22  E-value=0.083  Score=49.36  Aligned_cols=32  Identities=41%  Similarity=0.579  Sum_probs=29.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG   34 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~   34 (446)
                      +++|+|||+|.-|.+.|..|++.|++|+++ ++
T Consensus        19 ~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~   50 (318)
T 3hwr_A           19 GMKVAIMGAGAVGCYYGGMLARAGHEVILI-AR   50 (318)
T ss_dssp             -CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCeEEEE-Ec
Confidence            578999999999999999999999999999 64

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=93.21  E-value=0.081  Score=49.07  Aligned_cols=33  Identities=27%  Similarity=0.518  Sum_probs=30.3

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCC--cEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~--~v~v~e~~~   35 (446)
                      ++|+|||||..|.+.|..|+..|+  +|+++|..+
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            479999999999999999999998  999999854

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=93.13  E-value=0.096  Score=50.06  Aligned_cols=34  Identities=21%  Similarity=0.342  Sum_probs=31.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .++|+|+|+|..|+.+|+.|+..|.+|+++|+++
T Consensus       166 ~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          166 PASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            4689999999999999999999999999999864

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=93.11  E-value=0.091  Score=48.78  Aligned_cols=34  Identities=32%  Similarity=0.611  Sum_probs=31.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      +++|.|||.|.-|...|..|++.|++|+++++++
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~   42 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSP   42 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999999999999999999999999864

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=93.06  E-value=0.08  Score=52.25  Aligned_cols=34  Identities=29%  Similarity=0.423  Sum_probs=31.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .++|+|||+|.-|...|..|++.|++|+++|+++
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~   70 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDP   70 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            3579999999999999999999999999999864

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=93.03  E-value=0.11  Score=45.32  Aligned_cols=35  Identities=20%  Similarity=0.434  Sum_probs=31.0

Q ss_pred             CCCeEEEECc-ChHHHHHHHHHH-HCCCcEEEEeeCC
Q 013303            1 MFRHVAVIGA-GAAGLVVGHELL-REGHTVVVYEKGE   35 (446)
Q Consensus         1 ~~~~V~IIGa-G~aGl~aA~~l~-~~g~~v~v~e~~~   35 (446)
                      |++.|+|+|| |..|..+++.|+ +.|++|+++.++.
T Consensus         4 mmk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~   40 (221)
T 3r6d_A            4 MYXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQL   40 (221)
T ss_dssp             SCSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             eEEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCc
Confidence            4566999996 999999999999 8999999999864

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=93.02  E-value=0.074  Score=52.11  Aligned_cols=33  Identities=24%  Similarity=0.404  Sum_probs=30.6

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      ++|+|||+|..|+..|..|++.|++|+++|+++
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~   33 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            379999999999999999999999999999864

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=93.01  E-value=0.1  Score=50.03  Aligned_cols=34  Identities=35%  Similarity=0.341  Sum_probs=31.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .++|+|||+|..|+.+|+.++..|.+|+++|+..
T Consensus       168 g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~  201 (377)
T 2vhw_A          168 PADVVVIGAGTAGYNAARIANGMGATVTVLDINI  201 (377)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            4689999999999999999999999999999864

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=93.01  E-value=0.069  Score=53.02  Aligned_cols=34  Identities=24%  Similarity=0.255  Sum_probs=30.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~   35 (446)
                      +++|+|||+|.-|+..|..|++.  |++|+++|+++
T Consensus         9 ~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~   44 (481)
T 2o3j_A            9 VSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT   44 (481)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            46899999999999999999998  78999999864

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=93.01  E-value=0.1  Score=48.66  Aligned_cols=34  Identities=24%  Similarity=0.451  Sum_probs=31.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC--cEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~--~v~v~e~~~   35 (446)
                      .++|+|||+|.-|.+.|..|++.|+  +|+++|+++
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   68 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence            3689999999999999999999999  999999864

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=92.99  E-value=0.1  Score=47.50  Aligned_cols=34  Identities=26%  Similarity=0.203  Sum_probs=31.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .++|+|+|+|-.|.++|..|++.|.+|++++|+.
T Consensus       119 ~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~  152 (271)
T 1nyt_A          119 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV  152 (271)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCH
Confidence            4689999999999999999999999999998863

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=92.80  E-value=0.054  Score=52.48  Aligned_cols=32  Identities=25%  Similarity=0.280  Sum_probs=28.9

Q ss_pred             CCCeEEEECcChHHHHHHHHHHH-CCCcEEEEe
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLR-EGHTVVVYE   32 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~-~g~~v~v~e   32 (446)
                      |+++|+|||+|.-|.+.|..|++ .|++|++++
T Consensus         1 ~~mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~   33 (404)
T 3c7a_A            1 MTVKVCVCGGGNGAHTLSGLAASRDGVEVRVLT   33 (404)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred             CCceEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence            45789999999999999999988 499999998

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=92.78  E-value=0.1  Score=51.88  Aligned_cols=35  Identities=23%  Similarity=0.328  Sum_probs=32.6

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      |.++|.|||+|.-|...|..|++.|++|+++++++
T Consensus         9 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~   43 (497)
T 2p4q_A            9 MSADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQ   43 (497)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            56789999999999999999999999999999865

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=92.77  E-value=0.051  Score=52.02  Aligned_cols=33  Identities=15%  Similarity=0.148  Sum_probs=30.7

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      ++|+|||+|..|++.|..+++.|.+|.++.+++
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~   34 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRP   34 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence            469999999999999999999999999998765

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=92.72  E-value=0.056  Score=53.04  Aligned_cols=77  Identities=18%  Similarity=0.226  Sum_probs=51.5

Q ss_pred             CCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCccccccCCCCCCeeeccceeEEccCCcEEecC--CcEE-eecE
Q 013303          195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVERANEDGTVVFRN--GRVV-SADV  271 (446)
Q Consensus       195 ~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~~~~~~~~~~~~v~~~~~v~~i~~~~~v~~~d--G~~~-~~D~  271 (446)
                      +++|+|+|||.|.+|+..|..|++.|.+|+.+..+........+. .+ +             .+.+..  ...+ .+|.
T Consensus         3 ~~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~~~l~-~G-~-------------~~~~g~~~~~~~~~~d~   67 (439)
T 2x5o_A            3 YQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLP-EA-V-------------ERHTGSLNDEWLMAADL   67 (439)
T ss_dssp             CTTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTGGGSC-TT-S-------------CEEESSCCHHHHHTCSE
T ss_pred             CCCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchhHHhh-CC-C-------------EEEECCCcHHHhccCCE
Confidence            578999999999999999999999999999988765321111111 11 0             011110  0112 3799


Q ss_pred             EEEecCccCCCCCCC
Q 013303          272 IMHCTGYKYNYPFLE  286 (446)
Q Consensus       272 vi~atG~~~~~~~l~  286 (446)
                      ||.++|..++.|.+.
T Consensus        68 vV~s~gi~~~~p~~~   82 (439)
T 2x5o_A           68 IVASPGIALAHPSLS   82 (439)
T ss_dssp             EEECTTSCTTCHHHH
T ss_pred             EEeCCCCCCCCHHHH
Confidence            999999988777653

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=92.72  E-value=0.063  Score=52.17  Aligned_cols=34  Identities=21%  Similarity=0.198  Sum_probs=31.1

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      ++|+|||+|.+|+-+|..|++.|.+|+++.+++.
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~   34 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAM   34 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            4799999999999999999999999999998653

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=92.70  E-value=0.13  Score=48.15  Aligned_cols=34  Identities=26%  Similarity=0.380  Sum_probs=31.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~   35 (446)
                      +++|+|||||..|.+.|..|+..|+ +++++|..+
T Consensus         7 ~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~   41 (324)
T 3gvi_A            7 RNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE   41 (324)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence            4689999999999999999999998 999999864

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=92.66  E-value=0.12  Score=47.23  Aligned_cols=34  Identities=24%  Similarity=0.451  Sum_probs=30.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC--cEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~--~v~v~e~~~   35 (446)
                      +++|+|||+|.-|.+.|..|++.|+  +|+++++++
T Consensus         1 m~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   36 (281)
T 2g5c_A            1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (281)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CcEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            3689999999999999999999998  899998854

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=92.66  E-value=0.097  Score=51.57  Aligned_cols=33  Identities=21%  Similarity=0.264  Sum_probs=31.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG   34 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~   34 (446)
                      .++|+|||||..|...++.|.+.|.+|+|+++.
T Consensus        12 ~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~   44 (457)
T 1pjq_A           12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (457)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence            478999999999999999999999999999975

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=92.61  E-value=0.11  Score=48.01  Aligned_cols=34  Identities=21%  Similarity=0.253  Sum_probs=30.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~   35 (446)
                      .++|+|||+|.+|.++|..|++.|. +|+|++|+.
T Consensus       141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~  175 (297)
T 2egg_A          141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRTV  175 (297)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred             CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            4689999999999999999999998 899999863

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=92.59  E-value=0.099  Score=48.60  Aligned_cols=33  Identities=33%  Similarity=0.660  Sum_probs=30.2

Q ss_pred             CeEEEECcChHHHHHHHHHHHCC--CcEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g--~~v~v~e~~~   35 (446)
                      ++|+|||+|..|.+.|..|++.|  .+|+++|+..
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~   36 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence            68999999999999999999999  6899999853

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=92.58  E-value=0.14  Score=43.93  Aligned_cols=33  Identities=27%  Similarity=0.509  Sum_probs=30.8

Q ss_pred             CeEEEECc-ChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      ++|+|+|| |..|..+++.|++.|++|+++.++.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~   37 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeCh
Confidence            68999999 9999999999999999999999864

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=92.56  E-value=0.064  Score=51.43  Aligned_cols=34  Identities=18%  Similarity=0.250  Sum_probs=31.1

Q ss_pred             CEEEEEecCCcHHHHHHHHhcc--CCEEEEEEecCC
Q 013303          198 QVVILIGHYASGLDIKRDLAGF--AKEVHIASRSVA  231 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~--~~~V~l~~r~~~  231 (446)
                      ++|+|||+|++|+-+|..|++.  |.+|+++.+.+.
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~   36 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDE   36 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCC
Confidence            3799999999999999999998  999999998754

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=92.56  E-value=0.11  Score=48.37  Aligned_cols=34  Identities=24%  Similarity=0.296  Sum_probs=30.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC--cEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~--~v~v~e~~~   35 (446)
                      +++|+|||+|..|.++|..|+..++  +++++|...
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   42 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            3589999999999999999999987  899999753

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=92.55  E-value=0.053  Score=51.77  Aligned_cols=33  Identities=21%  Similarity=0.128  Sum_probs=30.8

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      .+|+|||+|.+|+-+|..|++.|.+|+++.+..
T Consensus        18 ~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~   50 (382)
T 1ryi_A           18 YEAVVIGGGIIGSAIAYYLAKENKNTALFESGT   50 (382)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            589999999999999999999999999999864

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=92.54  E-value=0.14  Score=47.40  Aligned_cols=34  Identities=21%  Similarity=0.338  Sum_probs=31.8

Q ss_pred             CCeEEEECc-ChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      +++|+|.|| |..|...+..|++.|++|+++.+..
T Consensus         7 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   41 (321)
T 3vps_A            7 KHRILITGGAGFIGGHLARALVASGEEVTVLDDLR   41 (321)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCS
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCC
Confidence            578999999 9999999999999999999999865

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=92.54  E-value=0.12  Score=50.12  Aligned_cols=35  Identities=29%  Similarity=0.420  Sum_probs=31.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~   36 (446)
                      ..+|+|||+|..|..+|+.|.+.|++|+++|+++.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~   38 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPD   38 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            35799999999999999999999999999998743

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=92.53  E-value=0.12  Score=45.55  Aligned_cols=34  Identities=32%  Similarity=0.373  Sum_probs=31.5

Q ss_pred             CCeEEEECc-ChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .++|+|.|| |..|..+++.|++.|++|+++.|+.
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   55 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNE   55 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCeEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence            578999999 9999999999999999999999864

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=92.48  E-value=0.07  Score=51.77  Aligned_cols=34  Identities=24%  Similarity=0.216  Sum_probs=31.1

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      ++|+|||+|.+|+-+|..|++.|.+|+++.+++.
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~   34 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPI   34 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCC
Confidence            3799999999999999999999999999988653

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=92.47  E-value=0.061  Score=51.29  Aligned_cols=32  Identities=28%  Similarity=0.442  Sum_probs=30.1

Q ss_pred             eEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         4 ~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      +|+|||+|.-|.+.|..|++.|++|+++++++
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            89999999999999999999999999999864

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=92.46  E-value=0.13  Score=47.92  Aligned_cols=33  Identities=27%  Similarity=0.459  Sum_probs=29.6

Q ss_pred             CeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~   35 (446)
                      ++|+|||+|..|.+.|..|++.  |.+|+++|+.+
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~   35 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            3799999999999999999985  78999999864

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=92.41  E-value=0.054  Score=53.45  Aligned_cols=34  Identities=21%  Similarity=0.456  Sum_probs=31.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .++|+|+|+|-.|...|+.|.+.|++|+++|+.+
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~   36 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDG   36 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            4689999999999999999999999999999864

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=92.37  E-value=0.096  Score=47.95  Aligned_cols=32  Identities=31%  Similarity=0.469  Sum_probs=29.5

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      ++|+|||+|.-|...|..|++ |++|++++++.
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~   33 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTF   33 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TSCEEEECSST
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            579999999999999999999 99999999854

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=92.37  E-value=0.14  Score=47.43  Aligned_cols=34  Identities=26%  Similarity=0.436  Sum_probs=31.4

Q ss_pred             CCCeEEEECc-ChHHHHHHHHHHHCCCcEEEEeeC
Q 013303            1 MFRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKG   34 (446)
Q Consensus         1 ~~~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~~   34 (446)
                      |+++|+|.|| |..|...+..|++.|++|+++.+.
T Consensus         1 M~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~   35 (311)
T 3m2p_A            1 MSLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRS   35 (311)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCC
Confidence            6789999996 999999999999999999999986

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=92.36  E-value=0.13  Score=47.90  Aligned_cols=32  Identities=31%  Similarity=0.432  Sum_probs=30.3

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCC-cEEEEeeC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG   34 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~   34 (446)
                      ++|+|||+|..|.+.|..|+..|+ +|+++|..
T Consensus         9 ~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            9 KKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            589999999999999999999999 99999985

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=92.34  E-value=0.13  Score=48.82  Aligned_cols=34  Identities=29%  Similarity=0.474  Sum_probs=31.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      +++|.|||.|.-|...|..|++.|++|+++++++
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~   55 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNV   55 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            3689999999999999999999999999999864

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=92.34  E-value=0.11  Score=48.46  Aligned_cols=33  Identities=21%  Similarity=0.394  Sum_probs=30.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG   34 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~   34 (446)
                      +++|.|||.|.-|...|..|++.|+ +|++++++
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            4689999999999999999999999 99999985

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=92.28  E-value=0.074  Score=51.17  Aligned_cols=33  Identities=21%  Similarity=0.261  Sum_probs=30.4

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      ..|+|||+|.+|+-+|..|++.|.+|+++.+..
T Consensus         5 ~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~   37 (397)
T 2oln_A            5 YDVVVVGGGPVGLATAWQVAERGHRVLVLERHT   37 (397)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            379999999999999999999999999999754

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=92.27  E-value=0.13  Score=50.84  Aligned_cols=33  Identities=33%  Similarity=0.596  Sum_probs=31.1

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      ++|+|||+|.-|...|..|++.|++|+++|+++
T Consensus         6 ~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~   38 (483)
T 3mog_A            6 QTVAVIGSGTMGAGIAEVAASHGHQVLLYDISA   38 (483)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            589999999999999999999999999999864

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=92.24  E-value=0.089  Score=48.89  Aligned_cols=32  Identities=28%  Similarity=0.294  Sum_probs=29.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHC-----C-CcEEEEee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLRE-----G-HTVVVYEK   33 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~-----g-~~v~v~e~   33 (446)
                      +++|+|||+|.-|...|..|++.     | ++|+++++
T Consensus         8 ~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            8 PIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            35899999999999999999998     9 99999987

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=92.22  E-value=0.11  Score=47.33  Aligned_cols=34  Identities=29%  Similarity=0.354  Sum_probs=31.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .++|+|||+|-+|.++|..|++.|.+|++++|+.
T Consensus       119 ~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~  152 (272)
T 1p77_A          119 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF  152 (272)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4689999999999999999999999999999863

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=92.20  E-value=0.077  Score=52.84  Aligned_cols=34  Identities=26%  Similarity=0.364  Sum_probs=31.4

Q ss_pred             CCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       197 ~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      .++|+|||+|.+|+..|..|++.|.+|+++.+++
T Consensus        33 ~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~   66 (498)
T 2iid_A           33 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   66 (498)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCC
Confidence            5789999999999999999999999999998764

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=92.20  E-value=0.13  Score=44.56  Aligned_cols=33  Identities=33%  Similarity=0.479  Sum_probs=30.2

Q ss_pred             CeEEEEC-cChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVIG-AGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIG-aG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      ++|+||| +|..|...|..|++.|++|++++++.
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~   34 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3799999 99999999999999999999999863

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=92.15  E-value=0.13  Score=47.61  Aligned_cols=34  Identities=21%  Similarity=0.465  Sum_probs=30.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC--cEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~--~v~v~e~~~   35 (446)
                      +++|+|||||..|...|..|+..|+  +++++|..+
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~   49 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSE   49 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence            4689999999999999999999998  899999864

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=92.15  E-value=0.11  Score=48.61  Aligned_cols=31  Identities=29%  Similarity=0.539  Sum_probs=29.3

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEee
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEK   33 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~   33 (446)
                      ++|+|||+|.-|...|..|++.|++|+++++
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            3799999999999999999999999999998

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=92.14  E-value=0.16  Score=44.06  Aligned_cols=33  Identities=30%  Similarity=0.467  Sum_probs=30.2

Q ss_pred             CeEEEECc-ChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      ++|+|+|| |..|..+++.|++.|++|+++.|+.
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA   34 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence            36999997 9999999999999999999999864

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=92.06  E-value=0.16  Score=46.87  Aligned_cols=34  Identities=26%  Similarity=0.407  Sum_probs=31.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .++|+|||+|..|..+|+.|...|.+|+++++..
T Consensus       157 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          157 GSQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4789999999999999999999999999999853

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=92.04  E-value=0.1  Score=50.56  Aligned_cols=32  Identities=28%  Similarity=0.348  Sum_probs=29.5

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      ++|+|||+|.-|+..|..|++ |++|+++|+++
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~   32 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILP   32 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCH
Confidence            379999999999999999999 99999999864

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=92.02  E-value=0.14  Score=47.63  Aligned_cols=33  Identities=30%  Similarity=0.595  Sum_probs=30.7

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      ++|+|||+|.-|...|..|++.|++|+++++++
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~   63 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTA   63 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSG
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            689999999999999999999999999999854

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=91.99  E-value=0.17  Score=46.62  Aligned_cols=34  Identities=29%  Similarity=0.388  Sum_probs=31.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .++|+|||+|..|..+|+.|...|.+|+++++..
T Consensus       155 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          155 GANVAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            4789999999999999999999999999999853

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=91.99  E-value=0.11  Score=51.31  Aligned_cols=34  Identities=24%  Similarity=0.290  Sum_probs=31.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~   35 (446)
                      +++|+|||+|.-|+..|..|++.  |++|+++|+++
T Consensus         5 ~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~   40 (467)
T 2q3e_A            5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE   40 (467)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             ccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            35899999999999999999998  79999999864

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=91.95  E-value=0.13  Score=48.11  Aligned_cols=33  Identities=21%  Similarity=0.470  Sum_probs=30.2

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCC--cEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~--~v~v~e~~~   35 (446)
                      ++|+|||+|..|.+.|..|++.|+  +|+++|+.+
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~   35 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            479999999999999999999998  999999853

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=91.93  E-value=0.076  Score=50.19  Aligned_cols=33  Identities=36%  Similarity=0.369  Sum_probs=30.9

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      ..|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus         5 ~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~   37 (369)
T 3dme_A            5 IDCIVIGAGVVGLAIARALAAGGHEVLVAEAAE   37 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            479999999999999999999999999999874

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=91.87  E-value=0.18  Score=47.01  Aligned_cols=34  Identities=24%  Similarity=0.453  Sum_probs=30.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~   35 (446)
                      +++|+|||+|..|.+.|..|+..++ +++++|..+
T Consensus         5 ~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~   39 (321)
T 3p7m_A            5 RKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ   39 (321)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh
Confidence            4689999999999999999999888 999999864

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=91.84  E-value=0.13  Score=44.97  Aligned_cols=34  Identities=26%  Similarity=0.430  Sum_probs=31.3

Q ss_pred             CCeEEEECc-ChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      +++|+|+|| |..|...++.|++.|++|+++.|..
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~   38 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHP   38 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCG
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCc
Confidence            478999997 9999999999999999999999864

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=91.80  E-value=0.11  Score=49.77  Aligned_cols=34  Identities=18%  Similarity=0.252  Sum_probs=31.8

Q ss_pred             CCCEEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303          196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS  229 (446)
Q Consensus       196 ~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~  229 (446)
                      ...+|+|||+|.+|+-+|..|++.|.+|+++.++
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~   76 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEAN   76 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCcEEEEecc
Confidence            4679999999999999999999999999999987

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=91.77  E-value=0.13  Score=39.67  Aligned_cols=36  Identities=19%  Similarity=0.137  Sum_probs=31.8

Q ss_pred             CCCEEEEEecCCcHHHHHHHHhccC-CEEEEEEecCC
Q 013303          196 QDQVVILIGHYASGLDIKRDLAGFA-KEVHIASRSVA  231 (446)
Q Consensus       196 ~~k~VvVVG~G~sg~eia~~l~~~~-~~V~l~~r~~~  231 (446)
                      .+++|+|+|+|..|..++..|.+.| .+|+++.|++.
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~   40 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLA   40 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHH
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHH
Confidence            3578999999999999999999998 88999988654

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=91.75  E-value=0.11  Score=49.33  Aligned_cols=32  Identities=31%  Similarity=0.349  Sum_probs=30.1

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRS  229 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~  229 (446)
                      ..|+|||+|.+|+-+|..|++.|.+|+++.+.
T Consensus         7 ~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~   38 (363)
T 1c0p_A            7 KRVVVLGSGVIGLSSALILARKGYSVHILARD   38 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence            57999999999999999999999999999974

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=91.74  E-value=0.1  Score=51.44  Aligned_cols=33  Identities=24%  Similarity=0.289  Sum_probs=30.7

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCC--EEEEEEecC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAK--EVHIASRSV  230 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~--~V~l~~r~~  230 (446)
                      ++|+|||+|.+|+-.|..|++.|.  +|+++.+++
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~   37 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSE   37 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSS
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCC
Confidence            589999999999999999999999  999998755

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=91.73  E-value=0.15  Score=47.24  Aligned_cols=35  Identities=31%  Similarity=0.311  Sum_probs=29.7

Q ss_pred             CCCeEEEECc-ChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            1 MFRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         1 ~~~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      |.++|+|.|| |..|..++..|++.|++|+++++..
T Consensus         1 m~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   36 (315)
T 2ydy_A            1 MNRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRR   36 (315)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC---
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCC
Confidence            5689999999 9999999999999999999998753

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=91.71  E-value=0.19  Score=45.90  Aligned_cols=34  Identities=18%  Similarity=0.291  Sum_probs=31.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC---cEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH---TVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~---~v~v~e~~~   35 (446)
                      +++|.|||+|.-|.+.|..|.+.|+   +|+++++++
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~   39 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL   39 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH
Confidence            5789999999999999999999998   899999864

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=91.69  E-value=0.13  Score=42.20  Aligned_cols=35  Identities=17%  Similarity=0.206  Sum_probs=31.7

Q ss_pred             CCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       196 ~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      ..++|+|+|+|..|..++..|.+.+.+|+++.+++
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            35789999999999999999999999999999864

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=91.66  E-value=0.18  Score=47.12  Aligned_cols=33  Identities=27%  Similarity=0.469  Sum_probs=30.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG   34 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~   34 (446)
                      ..+|+|||+|-.|..+|+.|++.|. +++++|..
T Consensus        34 ~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D   67 (340)
T 3rui_A           34 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG   67 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Confidence            4689999999999999999999997 78999874

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=91.66  E-value=0.084  Score=50.47  Aligned_cols=33  Identities=18%  Similarity=0.128  Sum_probs=30.3

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      .+|+|||+|.+|+-+|..|++.|.+|+++.+..
T Consensus         4 ~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~   36 (389)
T 2gf3_A            4 FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (389)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            479999999999999999999999999998753

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=91.60  E-value=0.18  Score=49.91  Aligned_cols=34  Identities=18%  Similarity=0.281  Sum_probs=31.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      +++|.|||.|.-|...|..|++.|++|++++++.
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~   37 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   37 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999999999999999999999999875

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=91.56  E-value=0.18  Score=45.90  Aligned_cols=33  Identities=24%  Similarity=0.493  Sum_probs=30.1

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      ++|+|||+|.-|.+.|..|.+.|++|+++++++
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   33 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            379999999999999999999999999998853

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=91.56  E-value=0.21  Score=46.44  Aligned_cols=33  Identities=15%  Similarity=0.366  Sum_probs=30.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG   34 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~   34 (446)
                      .++++|+|+|-+|.++|..|++.|. +|+|+.|+
T Consensus       154 gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~  187 (315)
T 3tnl_A          154 GKKMTICGAGGAATAICIQAALDGVKEISIFNRK  187 (315)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             CCEEEEECCChHHHHHHHHHHHCCCCEEEEEECC
Confidence            4789999999999999999999998 89999986

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=91.52  E-value=0.2  Score=43.63  Aligned_cols=32  Identities=38%  Similarity=0.581  Sum_probs=29.9

Q ss_pred             eEEEECc-ChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            4 HVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         4 ~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      +|+|+|| |..|..+++.|++.|++|+++.|+.
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDP   34 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence            6999999 9999999999999999999999863

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=91.52  E-value=0.068  Score=50.82  Aligned_cols=33  Identities=15%  Similarity=0.107  Sum_probs=30.3

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      ..|+|||+|.+|+-+|..|++.|.+|+++.+..
T Consensus         3 ~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~   35 (372)
T 2uzz_A            3 YDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHM   35 (372)
T ss_dssp             EEEEESCTTHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            369999999999999999999999999998764

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=91.50  E-value=0.15  Score=46.51  Aligned_cols=34  Identities=24%  Similarity=0.293  Sum_probs=30.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~   35 (446)
                      .++|+|||+|-+|.++|..|++.|. +|+++.|+.
T Consensus       117 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  151 (277)
T 3don_A          117 DAYILILGAGGASKGIANELYKIVRPTLTVANRTM  151 (277)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCG
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            3689999999999999999999998 899999864

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=91.48  E-value=0.23  Score=46.56  Aligned_cols=34  Identities=35%  Similarity=0.332  Sum_probs=31.5

Q ss_pred             CCCeEEEECc-ChHHHHHHHHHHHCCCcEEEEeeC
Q 013303            1 MFRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKG   34 (446)
Q Consensus         1 ~~~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~~   34 (446)
                      |+++|+|.|| |..|..+++.|++.|++|+++++.
T Consensus         1 M~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~   35 (348)
T 1ek6_A            1 MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNF   35 (348)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecC
Confidence            6789999997 999999999999999999999875

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=91.41  E-value=0.22  Score=45.63  Aligned_cols=36  Identities=28%  Similarity=0.350  Sum_probs=32.2

Q ss_pred             CeEEEECc-ChHHHHHHHHHHHCCCcEEEEeeCCCcC
Q 013303            3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGEQVG   38 (446)
Q Consensus         3 ~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~~~~~G   38 (446)
                      ++|+|.|| |..|-..+..|.++|++|+++.|++..+
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~   37 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPG   37 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcC
Confidence            46999999 9999999999999999999998876443

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=91.41  E-value=0.17  Score=46.69  Aligned_cols=34  Identities=35%  Similarity=0.490  Sum_probs=31.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      +++|+|||+|.-|...|..|++.|++|+++++++
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   37 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLME   37 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            4689999999999999999999999999998853

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=91.40  E-value=0.17  Score=45.55  Aligned_cols=34  Identities=15%  Similarity=0.346  Sum_probs=30.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCC----CcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREG----HTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g----~~v~v~e~~~   35 (446)
                      +++|.|||+|.-|.+.|..|++.|    ++|++++++.
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~   41 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSK   41 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCc
Confidence            368999999999999999999999    6899999864

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=91.40  E-value=0.18  Score=47.19  Aligned_cols=34  Identities=32%  Similarity=0.515  Sum_probs=30.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC--cEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~--~v~v~e~~~   35 (446)
                      .++|+|||+|..|.++|..|+..|+  +++++|...
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~   40 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNK   40 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecch
Confidence            3589999999999999999999987  899999853

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=91.39  E-value=0.092  Score=51.89  Aligned_cols=34  Identities=21%  Similarity=0.265  Sum_probs=31.0

Q ss_pred             CCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       197 ~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      ..+|+|||+|.+|+-.|..|++.|.+|+++.+++
T Consensus        16 ~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~   49 (478)
T 2ivd_A           16 GMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSA   49 (478)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            4689999999999999999999999999998865

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=91.38  E-value=0.2  Score=46.50  Aligned_cols=34  Identities=21%  Similarity=0.367  Sum_probs=31.1

Q ss_pred             CCeEEEECc-ChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      +++|+|+|| |..|...++.|++.|++|+++.|..
T Consensus        11 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   45 (318)
T 2r6j_A           11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPN   45 (318)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTT
T ss_pred             CCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCC
Confidence            468999997 9999999999999999999999864

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=91.37  E-value=0.17  Score=46.18  Aligned_cols=34  Identities=29%  Similarity=0.504  Sum_probs=30.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .++|+|||+|-.|.+.|..|.+.|.+|++++++.
T Consensus       129 ~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~  162 (275)
T 2hk9_A          129 EKSILVLGAGGASRAVIYALVKEGAKVFLWNRTK  162 (275)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSH
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCCEEEEEECCH
Confidence            3689999999999999999999999999999863

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=91.36  E-value=0.22  Score=47.84  Aligned_cols=34  Identities=18%  Similarity=0.343  Sum_probs=31.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .++|+|||+|..|..+++.+.+.|++|++++..+
T Consensus        14 ~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~   47 (389)
T 3q2o_A           14 GKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTK   47 (389)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            4689999999999999999999999999998754

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=91.36  E-value=0.17  Score=46.48  Aligned_cols=33  Identities=24%  Similarity=0.477  Sum_probs=30.2

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      ++|+|||+|.-|...|..|++.|++|++++++.
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~   33 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFP   33 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHTTCCEEEECSST
T ss_pred             CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            369999999999999999999999999999854

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=91.33  E-value=0.22  Score=45.56  Aligned_cols=34  Identities=26%  Similarity=0.403  Sum_probs=30.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~   35 (446)
                      .++|+|+|+|-+|.+++..|++.|. +|+|+.|+.
T Consensus       127 ~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~  161 (283)
T 3jyo_A          127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT  161 (283)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCH
Confidence            4789999999999999999999998 699998863

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=91.32  E-value=0.2  Score=45.71  Aligned_cols=34  Identities=21%  Similarity=0.176  Sum_probs=30.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~   35 (446)
                      .++|+|||+|-+|.+++..|.+.|. +|+|+.|+.
T Consensus       122 ~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~  156 (282)
T 3fbt_A          122 NNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNP  156 (282)
T ss_dssp             TSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            4789999999999999999999998 899999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	446
d2gv8a1	335	c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox	8e-26
d2gv8a1	335	c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox	6e-21
d2gv8a2	107	c.3.1.5 (A:181-287) Flavin-dependent monoxygenase	1e-18
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	2e-17
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	5e-13
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	6e-12
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	5e-10
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	1e-09
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	2e-09
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	3e-09
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	3e-09
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	1e-08
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	2e-08
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	2e-08
d1w4xa2	235	c.3.1.5 (A:155-389) Phenylacetone monooxygenase {T	7e-08
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	1e-07
d1cjca2	230	c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase	2e-07
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	3e-07
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	9e-07
d1lqta2	239	c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reduct	2e-06
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	2e-06
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	3e-06
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	3e-06
d1c0pa1	268	c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida	4e-06
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	5e-06
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	7e-06
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	9e-06
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	9e-06
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	1e-05
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	1e-05
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	1e-05
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	4e-05
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	4e-05
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	5e-05
d1kifa1	246	c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N	5e-05
d1n4wa1	367	c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of	1e-04
d3coxa1	370	c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of	1e-04
d2bs2a2	336	c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo	3e-04
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	6e-04
d1neka2	330	c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase	6e-04
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	7e-04
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	0.001
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	0.001
d1ps9a3	179	c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA redu	0.002
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	0.002
d1f0ya2	192	c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA	0.003
d1ks9a2	167	c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Esc	0.003
d1pn0a1	360	c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So	0.004
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	0.004
d1bg6a2	184	c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin	0.004

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score =  105 bits (261), Expect = 8e-26
 Identities = 65/291 (22%), Positives = 110/291 (37%), Gaps = 51/291 (17%)

Query: 3   RHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSET------------- 47
           R +A+IGAG +GLV    LL E     V ++E+    GG W YTS               
Sbjct: 5   RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPIL 64

Query: 48  ESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLR 107
            ++P+          S LY+ L+ N P ELMG+    F            ++P    +  
Sbjct: 65  TTEPIVGPAALPVYPSPLYRDLQTNTPIELMGYCDQSFKP-------QTLQFPHRHTIQE 117

Query: 108 YLQNFAREFGVDQVVRLHTEVLNARLVESNKWK--VKSRKKDDVVEEETFDAVVVCNGHF 165
           Y + +A+       ++L T+VL+    +   W    K  K    + ++ FDAV +CNGH+
Sbjct: 118 YQRIYAQPLLPF--IKLATDVLDIE-KKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHY 174

Query: 166 SVPRLAQVPGI-----------------DSWPGKQMHSHNYRIPNP---FQDQVVILIGH 205
            VP    +  +                 D      ++ H + IP+P   F    + ++  
Sbjct: 175 EVPYTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVPF 234

Query: 206 YASGLDIKRDLAGFAKEVHIASRSVA----DETHEKQPGYDNMWLHSMVER 252
             S          ++  + + S+       DE      G +NM+      +
Sbjct: 235 PTSQAQAAFLARVWSGRLKLPSKEEQLKWQDELMFSLSGANNMYHSLDYPK 285

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 91.3 bits (225), Expect = 6e-21
 Identities = 37/160 (23%), Positives = 61/160 (38%), Gaps = 12/160 (7%)

Query: 242 DNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNY--------PFLETNGIVTV 293
           D  W+ +                 V   +         Y Y                +  
Sbjct: 143 DGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYTGYLYSVPFPSLAKLKSPETKLID 202

Query: 294 DDNRVGPLYKHVFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMM 353
           D + V  +Y+H+F     P L+FVG+   V+PFP  + Q+ ++A V SGR+ LPS++E +
Sbjct: 203 DGSHVHNVYQHIFYIP-DPTLAFVGLALHVVPFPTSQAQAAFLARVWSGRLKLPSKEEQL 261

Query: 354 EDVKAFYSKLEASGKPKRYTHIMDYPQLIEYTDWLAAQCN 393
           +        L  +       H +DYP+   Y + L   C 
Sbjct: 262 KWQDELMFSLSGANNMY---HSLDYPKDATYINKLHDWCK 298

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 107

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 78.9 bits (194), Expect = 1e-18
 Identities = 23/109 (21%), Positives = 47/109 (43%), Gaps = 11/109 (10%)

Query: 173 VPGIDSW----PGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR 228
           + G+D +    PG  +HS  +R P  F  + V+++G  +S  D+ R L   AK     S 
Sbjct: 4   IKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSL 63

Query: 229 SVADETHEKQPGYDNMWLHSMVERANEDG-TVVFRNGRVVSA-DVIMHC 275
                        +++     + + +     +  + G+V+S  D +++C
Sbjct: 64  L-----GGGDIQNESLQQVPEITKFDPTTREIYLKGGKVLSNIDRVIYC 107

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 80.6 bits (198), Expect = 2e-17
 Identities = 42/194 (21%), Positives = 65/194 (33%), Gaps = 30/194 (15%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS 64
           V V+GAG +GL   + L   G +V V E    VGG W +             NRYP    
Sbjct: 10  VLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYW-------------NRYPGARC 56

Query: 65  LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRL 124
             +S+           Q + +            RY    E+LRY+   A +F +   +  
Sbjct: 57  DIESIEYCYSFSEEVLQEWNWT----------ERYASQPEILRYINFVADKFDLRSGITF 106

Query: 125 HTEVLNARL-VESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPG--IDSWPG 181
           HT V  A     +N W V +   D          +++ +G  S      +    I     
Sbjct: 107 HTTVTAAAFDEATNTWTVDTNHGDR----IRARYLIMASGQLSDALTGALFKIDIRGVGN 162

Query: 182 KQMHSHNYRIPNPF 195
             +       P  +
Sbjct: 163 VALKEKWAAGPRTY 176

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 66.4 bits (161), Expect = 5e-13
 Identities = 33/170 (19%), Positives = 72/170 (42%), Gaps = 8/170 (4%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESD--PLGVDPNRYPVH 62
             +IGAGAAGL    +L + G +V V++ G+++G   + +     +   L V P  Y   
Sbjct: 7   NIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQ 66

Query: 63  SS--LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQ 120
           +   +  +L      + +   A   +  + +    L    G E+++  L++   ++G   
Sbjct: 67  NPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKI 126

Query: 121 VVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRL 170
              L +EV     +++++      + +    +     ++V  G  S+P L
Sbjct: 127 --LLRSEVSQVERIQNDEKVRFVLQVNS--TQWQCKNLIVATGGLSMPGL 172

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 63.1 bits (152), Expect = 6e-12
 Identities = 45/233 (19%), Positives = 76/233 (32%), Gaps = 23/233 (9%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT-----SETESDPLGVDPNRY 59
           V VIG G +GL+       EG  V++ +KG ++G     +     + T   PL       
Sbjct: 5   VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHI 64

Query: 60  PVHSSLYKSLRVNLPRE--LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG 117
           P +     S       E  +  F+      +  +           + V+  L    ++ G
Sbjct: 65  PGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLG 124

Query: 118 VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGID 177
           V        E +     E+ + K    +  +       + VV+  G  SVP+        
Sbjct: 125 VKIRTNTPVETI---EYENGQTKAVILQTGE---VLETNHVVIAVGGKSVPQTGSTGDGY 178

Query: 178 SWPGKQMHSHNY--------RIPNPFQDQVVILIGHYASG--LDIKRDLAGFA 220
           +W  K  H+           +  NP +       G Y  G  LDI     G+ 
Sbjct: 179 AWAEKAGHTITELFGGGVSVKEINPKEMSSKFTNGLYFCGEVLDIHGYTGGYN 231

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 58.6 bits (140), Expect = 5e-10
 Identities = 44/284 (15%), Positives = 84/284 (29%), Gaps = 31/284 (10%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVD--PNRYP 60
           +HV ++GAG AGL   + L   GH V V E  E+ GG  + T   E      +  P R P
Sbjct: 31  KHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGG-RVRTYRNEEAGWYANLGPMRLP 89

Query: 61  VHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQ 120
               + +         L  F      A  +  ++  +     ++                
Sbjct: 90  EKHRIVREYIRKFDLRLNEFSQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKS 149

Query: 121 VVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWP 180
             +L+ E L               K  + ++      ++     +S        G  S  
Sbjct: 150 AGQLYEESL--------------GKVVEELKRTNCSYILNKYDTYSTKEYLIKEGDLSPG 195

Query: 181 GKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPG 240
              M        + +    +  + H                E+      +    +     
Sbjct: 196 AVDMIGDLLNEDSGYYVSFIESLKHDDIF-----AYEKRFDEIVDGMDKLPTAMYRDIQD 250

Query: 241 YDNMWLHSMVERANEDG---TVVFR----NGRVVSADVIMHCTG 277
              +  ++ V +  ++    TVV+         V+AD ++ CT 
Sbjct: 251 K--VHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTT 292

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.5 bits (137), Expect = 1e-09
 Identities = 31/291 (10%), Positives = 57/291 (19%), Gaps = 22/291 (7%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS 64
           V V+G G    ++   +   G  V+  ++    GG            +      Y     
Sbjct: 9   VIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSS--------ITPLEELYKRFQL 60

Query: 65  LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRL 124
           L                  P         V +  Y      L +             +  
Sbjct: 61  LEGPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYK 120

Query: 125 HTEVLNARLVES------------NKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQ 172
                   L  +                V +  ++D    E  D                
Sbjct: 121 VPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLG 180

Query: 173 VPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKE--VHIASRSV 230
              ID               +    + +  I  Y+  L              +    +  
Sbjct: 181 QDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGELPQGF 240

Query: 231 ADETHEKQPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYN 281
           A  +      Y        +   N     V   G V     ++    Y  +
Sbjct: 241 ARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYVPD 291

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 56.3 bits (134), Expect = 2e-09
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS 64
          VAV+G G +GL V H L   G   V+ E   ++GG  + T       +   PN +     
Sbjct: 3  VAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGG-AVGTHALAGYLVEQGPNSFLDREP 61

Query: 65 LYKSL 69
            ++L
Sbjct: 62 ATRAL 66

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (134), Expect = 3e-09
 Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 6/118 (5%)

Query: 4   HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR----- 58
            V +IG+G +GL    +L   G  V + E  ++VGG  + T    +    +         
Sbjct: 7   KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG-RVATFRKGNYVADLGAMVVTGLG 65

Query: 59  YPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREF 116
               + + K + + L +       Y    +      D         +L      + + 
Sbjct: 66  GNPMAVVSKQVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQL 123

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 56.0 bits (133), Expect = 3e-09
 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 5/92 (5%)

Query: 3  RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPN----R 58
          + VAVIGAG +GL   ++L   G  V V+E   + GG  + +   +        N     
Sbjct: 2  KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGG-KLRSVSQDGLIWDEGANTMTES 60

Query: 59 YPVHSSLYKSLRVNLPRELMGFQAYPFVARNY 90
              + L  SL +   ++    Q   ++ARN 
Sbjct: 61 EGDVTFLIDSLGLREKQQFPLSQNKRYIARNG 92

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 1e-08
 Identities = 39/274 (14%), Positives = 64/274 (23%), Gaps = 26/274 (9%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVD------PNR 58
           V V+G G +G+     L   G  VVV E  ++VGG   YT   +     VD         
Sbjct: 2   VVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGG-RTYTLRNQ-KVKYVDLGGSYVGPT 59

Query: 59  YPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGV 118
                 L K L +   +     +    V               +        NF R    
Sbjct: 60  QNRILRLAKELGLETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDD 119

Query: 119 DQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDS 178
                       A L E           D +   E+   +     +  V           
Sbjct: 120 MGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVSALW 179

Query: 179 WPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQ 238
           +                 +          SG   +R +      V +             
Sbjct: 180 FLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLLGDRVKLERP---------- 229

Query: 239 PGYDNMWLHSMVERANEDGTVVFRNGRVVSADVI 272
                      +++  E+  V   N  +  A  +
Sbjct: 230 --------VIYIDQTRENVLVETLNHEMYEAKYV 255

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 53.8 bits (127), Expect = 2e-08
 Identities = 32/330 (9%), Positives = 83/330 (25%), Gaps = 33/330 (10%)

Query: 4   HVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNR---- 58
            V V+GAG +G+     L   G   +++ E  + +GG  ++ +      + +  N     
Sbjct: 2   RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGG-RMHKTNFAGINVELGANWVEGV 60

Query: 59  -YPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFG 117
                + ++  +   L                Y+    +      ++ +    +      
Sbjct: 61  NGGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEEMGE 120

Query: 118 VDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGID 177
                   +   +  ++   +             +   D           PR+  +    
Sbjct: 121 KLSATLHASGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTSLQNTV 180

Query: 178 SWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEK 237
                     +       +    ++                         ++        
Sbjct: 181 PLATFSDFGDDVYFVADQRGYEAVVYYLA-----------------GQYLKTDDKSGKIV 223

Query: 238 QPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNY-------PFLETNGI 290
            P      +   ++ +    TV   +  V SAD +M                P L T  +
Sbjct: 224 DPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKV 283

Query: 291 VTVDDNRVGPLYKHVFPPVLAP--GLSFVG 318
             +       + ++ +  + AP   + F G
Sbjct: 284 RAIYQFWPVGVNRYEYDQLRAPVGRVYFTG 313

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 53.3 bits (127), Expect = 2e-08
 Identities = 20/146 (13%), Positives = 62/146 (42%), Gaps = 9/146 (6%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVD--PNRYP 60
           + + ++GAG +G V+G +L  +GH V + ++ + +GG+     ++E++ +     P+ + 
Sbjct: 3   KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFH 62

Query: 61  VHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQ 120
             +    +        +             + +V+ + +     +    Q F++    D+
Sbjct: 63  TDNETVWNYVNKHAEMMPYV-------NRVKATVNGQVFSLPINLHTINQFFSKTCSPDE 115

Query: 121 VVRLHTEVLNARLVESNKWKVKSRKK 146
              L  E  ++ + +   ++ ++ + 
Sbjct: 116 ARALIAEKGDSTIADPQTFEEEALRF 141

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 50.9 bits (120), Expect = 7e-08
 Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 1/122 (0%)

Query: 167 VPRLAQVPGIDSWPGKQMHSHNY-RIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHI 225
           VP+L   PG+  + G   H+ N+   P  F  Q V +IG  +SG+ +   +A  A E+ +
Sbjct: 1   VPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFV 60

Query: 226 ASRSVADETHEKQPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFL 285
             R+       +    D  +L  + +R  E                         +   +
Sbjct: 61  FQRTPHFAVPARNAPLDPEFLADLKKRYAEFREESRNTPGGTHRYQGPKSALEVSDEELV 120

Query: 286 ET 287
           ET
Sbjct: 121 ET 122

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 51.0 bits (121), Expect = 1e-07
 Identities = 36/238 (15%), Positives = 78/238 (32%), Gaps = 16/238 (6%)

Query: 1   MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYP 60
           M+    ++G+G  G V  +EL +    V+V EK   +GG   YT + E    G+  ++Y 
Sbjct: 1   MYD-YIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGG-NAYTEDCE----GIQIHKYG 54

Query: 61  VH-SSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVD 119
            H          +   +L+ F  +            L   P +      +          
Sbjct: 55  AHIFHTNDKYIWDYVNDLVEFNRFTNSPLAIY-KDKLFNLPFNMNTFHQMWGVKDPQEAQ 113

Query: 120 QVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSW 179
            ++    +    ++ E+ + +  S   +D+ +        +  G+           + ++
Sbjct: 114 NIINAQKKKYGDKVPENLEEQAISLVGEDLYQA-------LIKGYTEKQWGRSAKELPAF 166

Query: 180 PGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEK 237
             K++    +   N +       I        I++ L G   ++ I      D    K
Sbjct: 167 IIKRIPV-RFTFDNNYFSDRYQGIPVGGYTKLIEKMLEGVDVKLGIDFLKDKDSLASK 223

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.1 bits (116), Expect = 2e-07
 Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 2/42 (4%)

Query: 4  HVAVIGAGAAGLVVGHELLR--EGHTVVVYEKGEQVGGSWIY 43
           + V+G+G AG      LL+      V +YEK     G   +
Sbjct: 3  QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRF 44

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 49.6 bits (117), Expect = 3e-07
 Identities = 35/216 (16%), Positives = 61/216 (28%), Gaps = 15/216 (6%)

Query: 1   MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPN--- 57
           M   VA+IGAG +GL++G  L + G   V+ E+                    ++     
Sbjct: 1   MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDY------VLGRIRAGVLEQGMVD 54

Query: 58  ---RYPVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAR 114
                 V   + +   V+   E+        +              G  EV R L     
Sbjct: 55  LLREAGVDRRMARDGLVHEGVEIAFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEARE 114

Query: 115 EFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVP 174
             G   V +     L        +    + ++D        D +  C+G   + R +   
Sbjct: 115 ACGATTVYQAAEVRL---HDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGISRQSIPA 171

Query: 175 GIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGL 210
                    +      I  P   + + L     S L
Sbjct: 172 ERMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTL 207

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.3 bits (113), Expect = 9e-07
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW 41
          V V+G G    ++   L  +G  V+  +K +  GG  
Sbjct: 8  VIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEA 44

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 239

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 46.6 bits (109), Expect = 2e-06
 Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 7/47 (14%)

Query: 4  HVAVIGAGAAGLVVGHELLREGHT-------VVVYEKGEQVGGSWIY 43
          ++A++G+G +       LL+   T       V + E      G    
Sbjct: 4  YIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRS 50

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 46.8 bits (110), Expect = 2e-06
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 5  VAVIGAGAAGLVVGHELLRE-GHTVVVYEKGEQVGGSWIY 43
          V V+GAG+AGL   +E+ +     V + E+    GG    
Sbjct: 36 VVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWL 75

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 46.2 bits (108), Expect = 3e-06
 Identities = 43/277 (15%), Positives = 81/277 (29%), Gaps = 21/277 (7%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS 64
           + VIG G+ G+       R    V + EK   +GG+ +                 P    
Sbjct: 4   LIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGGTCVNV------------GCVPKKIM 50

Query: 65  LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRL 124
              +   ++      +      + N    V+ R          Y QN +++         
Sbjct: 51  FNAASVHDILENSRHYGFDTKFSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTA 110

Query: 125 HTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQM 184
                N  L++  K            E      +++  G+  V R      +        
Sbjct: 111 SFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVGRSPDTENLKLEKLNVE 170

Query: 185 HSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNM 244
            ++NY + +  Q   V     YA G     D     K   I   ++    +E++      
Sbjct: 171 TNNNYIVVDENQRTSV--NNIYAVG-----DCCMVKKSKEIEDLNLLKLYNEERYLNKKE 223

Query: 245 WLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYN 281
            +   +    +   V    GR++ AD +      K N
Sbjct: 224 NVTEDIFYNVQLTPVAINAGRLL-ADRLFLKKTRKTN 259

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 46.5 bits (109), Expect = 3e-06
 Identities = 13/41 (31%), Positives = 19/41 (46%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTS 45
          V +IG+G AGL         G  V++ EK    GG+    +
Sbjct: 26 VVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAA 66

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

 Score = 45.8 bits (107), Expect = 4e-06
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 3  RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40
          + V V+G+G  GL     L R+G++V +  +      S
Sbjct: 7  KRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVS 44

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 46.1 bits (108), Expect = 5e-06
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTS 45
          V V+GAG+AG        + G  V++ +K    GG+ + ++
Sbjct: 22 VLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISA 62

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 45.4 bits (106), Expect = 7e-06
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40
          V V+G+G AG          G  V++ EK   +GG+
Sbjct: 19 VVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGN 54

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 44.7 bits (104), Expect = 9e-06
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW 41
            VIG G  G  + + L +E     ++E G   G + 
Sbjct: 7  AVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTT 43

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 44.7 bits (104), Expect = 9e-06
 Identities = 9/36 (25%), Positives = 21/36 (58%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40
          V V+GAG+ G+  G++L ++G   ++ +  +    +
Sbjct: 6  VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTN 41

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (103), Expect = 1e-05
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETES 49
          V +IG G AG V   +  + G      EK  ++GG+ +      S
Sbjct: 8  VVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPS 52

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.9 bits (105), Expect = 1e-05
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 5   VAVIGAGAAGLVVGHEL--LREGHTVVVYEKGEQVGGSWIYTSETESDPL 52
           V ++GAG++GL   + +   R    V + E     GG      +  S  +
Sbjct: 53  VIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMV 102

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 43.7 bits (102), Expect = 1e-05
 Identities = 14/55 (25%), Positives = 21/55 (38%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRY 59
          V +IG G  G V   +  + G      EK   +GG+ +      S  L    + Y
Sbjct: 6  VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMY 60

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 42.8 bits (99), Expect = 4e-05
 Identities = 12/37 (32%), Positives = 17/37 (45%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW 41
          +AV+G   +GL     L   G  V VYE+  Q    +
Sbjct: 7  IAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGF 43

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 42.2 bits (98), Expect = 4e-05
 Identities = 13/48 (27%), Positives = 19/48 (39%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPL 52
          V V+G G  G         EG  V + E+ + +GG  +      S  L
Sbjct: 9  VVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKAL 56

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score = 43.0 bits (100), Expect = 5e-05
 Identities = 16/96 (16%), Positives = 32/96 (33%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS 64
           V ++G+G  G     EL+  G+ V +++ GE   G  I   +  +     + +++     
Sbjct: 7   VVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQ 66

Query: 65  LYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYP 100
                       L+     P   +     V     P
Sbjct: 67  GQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNP 102

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 42.2 bits (98), Expect = 5e-05
 Identities = 10/35 (28%), Positives = 14/35 (40%)

Query: 4  HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG 38
           V VIGAG  GL     +    H+V+     +   
Sbjct: 2  RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYA 36

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 14/99 (14%), Positives = 25/99 (25%), Gaps = 3/99 (3%)

Query: 5   VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLG---VDPNRYPV 61
             VIG G    V    L   G   ++ E G+         +               +   
Sbjct: 5   AVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNRT 64

Query: 62  HSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYP 100
            + L   L +++    +   A      NY+         
Sbjct: 65  EAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRG 103

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

 Score = 41.8 bits (97), Expect = 1e-04
 Identities = 10/55 (18%), Positives = 15/55 (27%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRY 59
            VIG+G  G V    L + G    + E G                      + +
Sbjct: 10 ALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMW 64

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score = 40.1 bits (92), Expect = 3e-04
 Identities = 9/36 (25%), Positives = 13/36 (36%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGS 40
            VIG G AGL       ++G + +V          
Sbjct: 8  SLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSH 43

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 38.8 bits (89), Expect = 6e-04
 Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44
             IG G+ G+   +     G    + E   ++GG+ +  
Sbjct: 5  YIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCVNV 43

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 330

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

 Score = 39.5 bits (91), Expect = 6e-04
 Identities = 10/39 (25%), Positives = 16/39 (41%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY 43
            VIGAG AG+    ++ + G T  +  K        + 
Sbjct: 10 AVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVS 48

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 38.6 bits (88), Expect = 7e-04
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 5  VAVIGAGAAGLVVGHELLREGHT-VVVYEKGEQVGGSWIY 43
          +A++GAG A +     L R G++ + ++EK E VGG    
Sbjct: 7  IALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTS 46

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 4  HVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVG 38
           + + GAG  GL     L + G   V + E   ++ 
Sbjct: 3  DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIR 38

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 5  VAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQVGGS 40
          + +IGAG  G  +  EL+  G + + V ++G      
Sbjct: 4  IVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNMPG 40

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

 Score = 37.1 bits (85), Expect = 0.002
 Identities = 16/71 (22%), Positives = 30/71 (42%)

Query: 3   RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVH 62
           +++AV+GAG AGL         GH V +++   ++GG +    +        +  RY   
Sbjct: 44  KNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRR 103

Query: 63  SSLYKSLRVNL 73
                 + + L
Sbjct: 104 MIEVTGVTLKL 114

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 37.1 bits (85), Expect = 0.002
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT 44
            V+GAG  G V      + G  V + EKG  +GG  +  
Sbjct: 6  TLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN-LGGVCLNV 44

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.003
 Identities = 14/52 (26%), Positives = 22/52 (42%)

Query: 1  MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPL 52
          + +HV VIG G  G  +       GHTVV+ ++ E +        E     +
Sbjct: 3  IVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKV 54

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 11/42 (26%), Positives = 18/42 (42%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSE 46
          + V+G GA G +    L ++GH V  + +  Q   S      
Sbjct: 3  ITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVET 44

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

 Score = 37.0 bits (84), Expect = 0.004
 Identities = 32/265 (12%), Positives = 69/265 (26%), Gaps = 29/265 (10%)

Query: 5   VAVIGAGAAGLVVGHELL-----REGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRY 59
           V ++GAG AGL+    L      +    V + +K                   G+     
Sbjct: 10  VLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKV--------YNGQADGLQCR-- 59

Query: 60  PVHSSLYKSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVD 119
                   +L   L    +  +           ++      GH      + +        
Sbjct: 60  --------TLES-LKNLGLADKILSEANDMSTIALYNPDENGHIRRTDRIPDTLPGISRY 110

Query: 120 QVVRLHTEVLNARL---VESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPGI 176
             V LH   +  R+   +          ++  + E+   D+    +          +  +
Sbjct: 111 HQVVLHQGRIERRILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAYPVT-MTLRYM 169

Query: 177 DSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHE 236
                  +   +      F+  +       A+    +   AG  + VH       D  H 
Sbjct: 170 SEDESTPLQFGHKTENGLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHS 229

Query: 237 KQPGYDNMWLHSMVERANEDGTVVF 261
                   +   + E+ ++D  V  
Sbjct: 230 WVR-RTLGFEMIVTEKFSKDERVFI 253

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 12/37 (32%), Positives = 16/37 (43%)

Query: 5  VAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW 41
          V VIGAG  G V   +  + G    + EK +   G  
Sbjct: 6  VIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKT 42

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

 Score = 36.0 bits (82), Expect = 0.004
 Identities = 9/35 (25%), Positives = 16/35 (45%)

Query: 3  RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV 37
          +  AV+G G  G      L  +G +V+ ++   Q 
Sbjct: 2  KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQR 36

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	446
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	100.0
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.94
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.78
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.77
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	99.75
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	99.67
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.66
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.65
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	99.65
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	99.61
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.6
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.58
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	99.58
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.57
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.55
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.54
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	99.53
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.52
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.51
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	99.5
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.49
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.42
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	99.42
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	99.41
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.4
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.39
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	99.39
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.39
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.38
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.37
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	99.37
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.36
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.35
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.33
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.33
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.33
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.32
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.32
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.32
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.32
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.32
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.31
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.3
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	99.3
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.3
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.3
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.3
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.29
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.28
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.27
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	99.26
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.26
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.25
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.24
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.23
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.23
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.22
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	99.22
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	99.22
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.2
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.17
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.17
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.16
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	99.16
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.14
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	99.14
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.13
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.13
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.13
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	99.13
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.13
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.11
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.1
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	99.09
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	99.08
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.08
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.06
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.05
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	99.02
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.02
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.02
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.01
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.0
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.99
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.97
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.97
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.92
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.91
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.89
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.88
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	98.87
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.86
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.83
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	98.83
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.82
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.82
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.79
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.78
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.76
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.75
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.75
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.74
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.71
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	98.68
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.66
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.65
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.63
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.57
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.57
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	98.49
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.46
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.44
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.39
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.36
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	98.32
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.3
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	98.27
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	98.23
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	98.17
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.17
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.11
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.1
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.08
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.06
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.02
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	97.99
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	97.97
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	97.93
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	97.91
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	97.9
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	97.89
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	97.83
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.81
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	97.8
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	97.79
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	97.73
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	97.72
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	97.72
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	97.67
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.66
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.59
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	97.5
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	97.45
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	97.44
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	97.44
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	97.38
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.29
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.28
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	97.27
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.24
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	97.19
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	97.14
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	97.08
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	96.91
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	96.87
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	96.82
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.75
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.73
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.72
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.71
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.65
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.52
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	96.51
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.5
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	96.34
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.33
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.32
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.3
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.28
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	96.28
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.16
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.12
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.0
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	95.97
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	95.83
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	95.83
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	95.8
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	95.73
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	95.67
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	95.58
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	95.46
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	95.42
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	95.42
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	95.32
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	95.29
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	95.29
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	95.26
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	95.26
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	95.2
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	95.16
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	95.07
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	95.05
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	94.95
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	94.92
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	94.91
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	94.89
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	94.82
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	94.69
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	94.61
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	94.6
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	94.56
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	94.49
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	94.46
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	94.43
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	94.31
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	94.31
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	94.27
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	94.26
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	94.24
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	94.23
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	94.23
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	94.14
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	94.12
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	94.02
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	94.01
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	93.87
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	93.85
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	93.85
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	93.83
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	93.76
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	93.73
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	93.71
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	93.68
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	93.65
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	93.65
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	93.6
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	93.59
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	93.57
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	93.51
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	93.45
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	93.33
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	93.28
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	93.2
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	93.16
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	93.14
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	93.05
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	93.02
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	92.98
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	92.88
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	92.78
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	92.76
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	92.65
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	92.43
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	92.34
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	92.2
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	92.12
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	91.98
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	91.96
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	91.79
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	91.78
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	91.67
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	91.65
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	91.6
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	91.52
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	91.07
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	91.01
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	90.9
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	90.89
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	90.85
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	90.79
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	90.73
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	90.72
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	90.72
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	90.71
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	90.65
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	90.62
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	90.62
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	90.6
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	90.6
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	90.53
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	90.4
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	90.33
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	90.31
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	90.27
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	90.15
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	89.95
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	89.85
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	89.81
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	89.77
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	89.51
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	89.28
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	89.17
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	88.93
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	88.76
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	88.75
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	88.68
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	88.63
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	88.61
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	88.55
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	88.45
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	88.39
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	88.09
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	88.02
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	87.91
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	87.72
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	87.64
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	87.62
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	87.62
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	87.51
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	87.47
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	87.31
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	87.19
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	87.1
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	87.1
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	87.05
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	86.89
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	86.8
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	86.79
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	86.65
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	86.53
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	86.53
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	86.5
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	86.41
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	86.33
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	86.12
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	86.06
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	85.91
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	85.9
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	85.72
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	85.68
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	85.59
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	85.56
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	85.49
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	85.44
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	85.37
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	85.36
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	85.28
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	85.28
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	85.13
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	85.11
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	85.03
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	84.79
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	84.75
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	84.74
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	84.73
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	84.69
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	84.34
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	84.28
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	84.26
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	84.19
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	84.18
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	84.14
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	84.09
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	84.06
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	84.0
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	83.94
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	83.85
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	83.82
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	83.8
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	83.67
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	83.58
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	83.57
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	83.55
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	83.54
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	83.5
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	83.4
d1iowa1	96	D-Ala-D-Ala ligase, N-domain {Escherichia coli, ge	83.3
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	83.24
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	83.21
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	83.13
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	83.1
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	83.07
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	82.9
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	82.78
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	82.7
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	82.6
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	82.49
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	82.43
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	82.41
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	82.34
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	82.32
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	82.28
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	81.64
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	81.55
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	81.5
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	81.47
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	81.46
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	81.42
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	81.38
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	81.29
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	81.29
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	81.19
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	81.15
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	81.02
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	80.96
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	80.75
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	80.67
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	80.65
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	80.65
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	80.62
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	80.61
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	80.51
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	80.49
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	80.41
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	80.32
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	80.29
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	80.2
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	80.18
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	80.09

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=100.00  E-value=6.8e-38  Score=300.18  Aligned_cols=277  Identities=31%  Similarity=0.554  Sum_probs=216.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCC--CcEEEEeeCCCcCceeeeCCCCCCCC--CCC-----------CCCCCCccCCcc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETESDP--LGV-----------DPNRYPVHSSLY   66 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g--~~v~v~e~~~~~GG~w~~~~~~~~~~--~g~-----------~p~~~~~~~~~y   66 (446)
                      +|+|||||||+|||++|+.|++.|  .+|+||||++.+||+|.+....+...  ...           ........+.+|
T Consensus         4 ~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~y   83 (335)
T d2gv8a1           4 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLY   83 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCC
T ss_pred             CCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCcccccccccccccccccccccccccc
Confidence            589999999999999999999876  59999999999999999865443210  000           011123457899


Q ss_pred             CceeecCCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC
Q 013303           67 KSLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK  146 (446)
Q Consensus        67 ~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~  146 (446)
                      ..+.++.+...+.|++++++..       .+.|+++.++.+||..+++.++..  |+||++|++|++.+ ++|+|++.+.
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~~~-------~~~f~~~~~~~~yl~~~~~~~~~~--I~~~t~V~~v~~~~-~~w~Vt~~~~  153 (335)
T d2gv8a1          84 RDLQTNTPIELMGYCDQSFKPQ-------TLQFPHRHTIQEYQRIYAQPLLPF--IKLATDVLDIEKKD-GSWVVTYKGT  153 (335)
T ss_dssp             TTCBCSSCHHHHSCTTCCCCTT-------CCSSCBHHHHHHHHHHHHGGGGGG--EECSEEEEEEEEET-TEEEEEEEES
T ss_pred             hhhhcCCcHhhhhhhhhcCCcc-------cccCCchHHHHHHHHHHHHHhhhc--ccCceEEEEEEecC-CEEEEEEEec
Confidence            9999999999999999999876       788999999999999999987654  99999999999987 8999999886


Q ss_pred             CC--ceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEE
Q 013303          147 DD--VVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVH  224 (446)
Q Consensus       147 ~~--~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~  224 (446)
                      ..  +..++.||+||+|||+++.|++|.+++..           +.....|++++                         
T Consensus       154 ~~~~~~~~~~~d~VI~AtG~~s~p~~~~~~~~~-----------~p~~~~f~~~~-------------------------  197 (335)
T d2gv8a1         154 KAGSPISKDIFDAVSICNGHYEVPYTGYLYSVP-----------FPSLAKLKSPE-------------------------  197 (335)
T ss_dssp             STTCCEEEEEESEEEECCCSSSSBCCCBCCCCC-----------CHHHHSCCSTT-------------------------
T ss_pred             CCCCeEEEEEeeEEEEcccccccceecccccCC-----------CCcchhcccCc-------------------------
Confidence            53  44567899999999999999998764421           10000111110                         


Q ss_pred             EEEecCCccccccCCCCCCeeeccceeEEccCCcEEecCCcEEeecEEEEecCccCCCCCCCCCCeeeeCCCCccccccc
Q 013303          225 IASRSVADETHEKQPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKH  304 (446)
Q Consensus       225 l~~r~~~~~~~~~~~~~~~v~~~~~v~~i~~~~~v~~~dG~~~~~D~vi~atG~~~~~~~l~~~g~i~~~~~~~~~l~~~  304 (446)
                                                                                      ..+..+.+...+||+|
T Consensus       198 ----------------------------------------------------------------~~~~~~~~~~~~ly~~  213 (335)
T d2gv8a1         198 ----------------------------------------------------------------TKLIDDGSHVHNVYQH  213 (335)
T ss_dssp             ----------------------------------------------------------------TCCCSSSSSCCSEETT
T ss_pred             ----------------------------------------------------------------cceeccccceeeeecc
Confidence                                                                            0111123445589999


Q ss_pred             ccCCCCCCCeEEecCCCccCchhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHcCCCCcceeecCCcchhHH
Q 013303          305 VFPPVLAPGLSFVGIPQKVIPFPFFELQSKWIASVLSGRIVLPSQDEMMEDVKAFYSKLEASGKPKRYTHIMDYPQLIEY  384 (446)
Q Consensus       305 ~~~~~~~p~l~~iG~~~~~~~~~~~~~qa~~~a~~l~g~~~lp~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y  384 (446)
                      +|.+. +|+|+|+|.+..+.++++++.||.++++.++|+..||+.++|.++..++....  .+...++ |.+..+.+.+|
T Consensus       214 ~~~~~-~p~l~f~G~~~~v~~~~~~e~Qa~~~a~~~~g~~~Lps~~~m~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~y  289 (335)
T d2gv8a1         214 IFYIP-DPTLAFVGLALHVVPFPTSQAQAAFLARVWSGRLKLPSKEEQLKWQDELMFSL--SGANNMY-HSLDYPKDATY  289 (335)
T ss_dssp             TEETT-CTTEEESSCCBSSCHHHHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHHHHH--TTCGGGT-TBCTTTHHHHH
T ss_pred             cccCC-CCceEEeeeEEEEecCCchHHHHHHHHHHHcCCccCCCcchhhhhhHHHHHhh--cccCccc-eecCCchHHHH
Confidence            99988 99999999998899999999999999999999999999999999877654333  3434334 66655578999


Q ss_pred             HHHHHHHC
Q 013303          385 TDWLAAQC  392 (446)
Q Consensus       385 ~~~l~~~~  392 (446)
                      +++|++.+
T Consensus       290 ~~~L~~~~  297 (335)
T d2gv8a1         290 INKLHDWC  297 (335)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998875

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.94  E-value=7.5e-27  Score=217.88  Aligned_cols=147  Identities=27%  Similarity=0.390  Sum_probs=121.6

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d   82 (446)
                      .||+|||||++||++|++|++.|++|+|||+++.+||+|.++                    .|++++.+.+...+.++.
T Consensus         8 ~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n--------------------~ypg~~~d~~~~~~~~s~   67 (298)
T d1w4xa1           8 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWN--------------------RYPGARCDIESIEYCYSF   67 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHC--------------------CCTTCBCSSCTTTSSCCS
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccC--------------------CCCCceeccccccccccc
Confidence            589999999999999999999999999999999999999875                    355566666666666655


Q ss_pred             CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCC-CceEEEEEeCCCceEEEEEcEEEEc
Q 013303           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES-NKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~-~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                      .+....   .......||+++++.+|+++++++++|.++|+|+++|++++.+++ +.|+|++.++.    ++++|+||+|
T Consensus        68 ~~~~~~---~~~~~~~~p~~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~----~~~~~~~i~a  140 (298)
T d1w4xa1          68 SEEVLQ---EWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGD----RIRARYLIMA  140 (298)
T ss_dssp             CHHHHH---HCCCCBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCC----EEEEEEEEEC
T ss_pred             cccccC---CCCCccccCccchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeecccccc----ccccceEEEe
Confidence            542211   012356789999999999999999999888999999999997653 67999987764    7899999999


Q ss_pred             cCCCCCCccCCCCCC
Q 013303          162 NGHFSVPRLAQVPGI  176 (446)
Q Consensus       162 tG~~s~p~~p~i~G~  176 (446)
                      ||.++.|.+|.++++
T Consensus       141 tG~ls~~~~p~~~~~  155 (298)
T d1w4xa1         141 SGQLSDALTGALFKI  155 (298)
T ss_dssp             CCSCCCCTTHHHHTS
T ss_pred             ecccccccCCccccc
Confidence            999999988876554

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=3.6e-21  Score=163.91  Aligned_cols=122  Identities=26%  Similarity=0.476  Sum_probs=99.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      +|+|+|||||||||+||..|+++|++|+|||+.+.+||.++...                                    
T Consensus        43 ~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~------------------------------------   86 (179)
T d1ps9a3          43 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAK------------------------------------   86 (179)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHT------------------------------------
T ss_pred             CcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEE------------------------------------
Confidence            58999999999999999999999999999999999999887521                                    


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                   ..+.+....++.+|+.+.+++++++  +++|+.|+.              +     ....||.||+|
T Consensus        87 -------------~~p~~~~~~~~~~~~~~~~~~~gV~--i~l~~~Vt~--------------~-----~~~~~d~vilA  132 (179)
T d1ps9a3          87 -------------QIPGKEEFYETLRYYRRMIEVTGVT--LKLNHTVTA--------------D-----QLQAFDETILA  132 (179)
T ss_dssp             -------------TSTTCTTHHHHHHHHHHHHHHHTCE--EEESCCCCS--------------S-----SSCCSSEEEEC
T ss_pred             -------------eCcccchHHHHHHHHHHhhhcCCeE--EEeCCEEcc--------------c-----ccccceeEEEe
Confidence                         0123334478999999999999998  999987742              0     02468999999


Q ss_pred             cCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHH
Q 013303          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIK  213 (446)
Q Consensus       162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia  213 (446)
                      ||  +.|+.+.+||.+                  .+++|+|+|+|.+++|+.
T Consensus       133 tG--~~~~~~~~pg~~------------------~g~~v~vigggd~a~~~~  164 (179)
T d1ps9a3         133 SG--IPNRALAQPLID------------------SGKTVHLIGGCDVAMELD  164 (179)
T ss_dssp             CC--EECCTTHHHHHT------------------TTCCEEECGGGTCCSSCC
T ss_pred             ec--CCCcccccchhc------------------cCCEEEEECCcHhhhhcc
Confidence            99  778877777653                  368999999999999873

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.77  E-value=1.1e-19  Score=141.93  Aligned_cols=101  Identities=23%  Similarity=0.427  Sum_probs=86.6

Q ss_pred             cCCCCCCCCC----CccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCccccccCCCCCCee
Q 013303          170 LAQVPGIDSW----PGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMW  245 (446)
Q Consensus       170 ~p~i~G~~~~----~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~~~~~~~~~~~~v~  245 (446)
                      +|.+||+++|    +|.++||+.|+++.+|+||+|+|||+|.||+|+|.+|++.+++|+++.|++..     .....++.
T Consensus         1 iP~ipGl~~f~~~~~G~i~Hs~~y~~~~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~~-----~~~~~~~~   75 (107)
T d2gv8a2           1 IPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGG-----DIQNESLQ   75 (107)
T ss_dssp             BCCCBTHHHHHHHSTTSEEEGGGCCCGGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCC-----SCBCSSEE
T ss_pred             CcCCCChHHHhccCCccEEECCcCcchhhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCcc-----ccccccce
Confidence            5889997765    59999999999999999999999999999999999999999998888887651     12234677


Q ss_pred             eccceeEEccCC-cEEecCCcEEe-ecEEEEe
Q 013303          246 LHSMVERANEDG-TVVFRNGRVVS-ADVIMHC  275 (446)
Q Consensus       246 ~~~~v~~i~~~~-~v~~~dG~~~~-~D~vi~a  275 (446)
                      ..+.|.+++.++ .+.|.||++++ +|.||+|
T Consensus        76 ~~~~i~~~~~~~~~v~~~dG~~~~~vD~Ii~C  107 (107)
T d2gv8a2          76 QVPEITKFDPTTREIYLKGGKVLSNIDRVIYC  107 (107)
T ss_dssp             EECCEEEEETTTTEEEETTTEEECCCSEEEEC
T ss_pred             ecCCeeEEecCCCEEEEcCCCEEeCCCEEEEC
Confidence            788899987655 49999999987 8999998

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.75  E-value=8.6e-22  Score=177.35  Aligned_cols=166  Identities=13%  Similarity=0.110  Sum_probs=103.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||||||++|..|++.|++|+|||+++.+||.|......                                  
T Consensus        49 ~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~~~~~----------------------------------   94 (233)
T d1djqa3          49 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAAL----------------------------------   94 (233)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTS----------------------------------
T ss_pred             CceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCcccccccc----------------------------------
Confidence            5799999999999999999999999999999999999999863110                                  


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                     +.+.......++......+.....  . ...+   ..   +...++...    ..++.||+||+|
T Consensus        95 ---------------~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~---~~---~~~~~~~~~----~~~~~~d~vviA  146 (233)
T d1djqa3          95 ---------------PGLGEWSYHRDYRETQITKLLKKN--K-ESQL---AL---GQKPMTADD----VLQYGADKVIIA  146 (233)
T ss_dssp             ---------------TTCGGGGHHHHHHHHHHHHHHTTC--T-TCEE---EC---SCCCCCHHH----HHTSCCSEEEEC
T ss_pred             ---------------ceeecccccchhHHHHHHHHhhcc--e-eeee---ec---ccccccchh----hhhhccceeeec
Confidence                           000111233344444444332220  0 0010   10   111111111    124679999999


Q ss_pred             cCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          162 NGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       162 tG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      ||  +.+..|.+++.+.......+...........+++|+|||+|.+|+|+|.+|++.+++|+++.|++.
T Consensus       147 tG--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~  214 (233)
T d1djqa3         147 TG--ASECTLWNELKARESEWAENDIKGIYLIGDAEAPRLIADATFTGHRVAREIEEANPQIAIPYKRET  214 (233)
T ss_dssp             CC--EECCHHHHHHHHTTHHHHHTTCCEEEECGGGTSCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCC
T ss_pred             cC--CCcccccccccccccccchhhhhhhhhccccCCceeEecCchHHHHHHHHHHhcCCceEEEEeccc
Confidence            99  555555444322211111111111111224678999999999999999999999999999998864

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.67  E-value=7.8e-17  Score=144.38  Aligned_cols=64  Identities=31%  Similarity=0.554  Sum_probs=59.7

Q ss_pred             CCccCCCCCCCCCCccEEEeeecC-CCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          167 VPRLAQVPGIDSWPGKQMHSHNYR-IPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       167 ~p~~p~i~G~~~~~g~~~hs~~~~-~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      .|++|++||++.|+|.++||.+|. .+.+++||+|+|||+|.||+|+|.++++.+++++++.|++
T Consensus         1 vP~iP~~pG~e~F~G~v~HS~~~~~~~~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2           1 VPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             CCCCCCCTTGGGCCSEEEEGGGCCSSCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCCCCCCCChhhCCCcEEecCcCCCCCCCCCCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            489999999999999999999995 6678999999999999999999999999999999988776

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=2.4e-19  Score=159.30  Aligned_cols=184  Identities=15%  Similarity=0.209  Sum_probs=108.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCC-ccCceeecCCCCCccc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS-LYKSLRVNLPRELMGF   80 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~-~y~~l~~~~~~~~~~~   80 (446)
                      .+||+||||||||++||..+++.|.+|+|+|+. .+||+|.+.        ||.|++.+..++ .++.+....+...+..
T Consensus         2 ~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~-~~GGtc~~~--------gc~p~k~l~~~a~~~~~~~~~~~~~g~~~   72 (217)
T d1gesa1           2 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCVNV--------GCVPKKVMWHAAQIREAIHMYGPDYGFDT   72 (217)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHHHH--------SHHHHHHHHHHHHHHHHHHTTGGGGTEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecc-CcCCeEecc--------cccccccchhhHHHHHHHHhhhhhcCccC
Confidence            589999999999999999999999999999995 699999875        666665443322 1221111111100000


Q ss_pred             CCCCCCcCCCCCCCCCCCCCCHHHHHHHH-----------HHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCc
Q 013303           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYL-----------QNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDV  149 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl-----------~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~  149 (446)
                      .               ..-....++.++.           +...++.+++  +.........      ...+.  ..   
T Consensus        73 ~---------------~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~gV~--v~~~~~~~~~------~~~~~--~~---  124 (217)
T d1gesa1          73 T---------------INKFNWETLIASRTAYIDRIHTSYENVLGKNNVD--VIKGFARFVD------AKTLE--VN---  124 (217)
T ss_dssp             E---------------EEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEESCCEEEE------TTEEE--ET---
T ss_pred             C---------------cccccHHHHHHHHHHHHHHHHHHHHHHHhCCeEE--EEeeecccce------eeeec--CC---
Confidence            0               0001123333332           2223333443  3332211110      01111  11   


Q ss_pred             eEEEEEcEEEEccCCCCCCccCCCCCCCCCC----ccEEEeeecCCC---CCCCCCEEEEEecCCcHHHHHHHHhccCCE
Q 013303          150 VEEETFDAVVVCNGHFSVPRLAQVPGIDSWP----GKQMHSHNYRIP---NPFQDQVVILIGHYASGLDIKRDLAGFAKE  222 (446)
Q Consensus       150 ~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~----g~~~hs~~~~~~---~~~~~k~VvVVG~G~sg~eia~~l~~~~~~  222 (446)
                      ...+.++.+++|||  +.|.+|.+|+.+...    +.......+...   .....++|.|||+|.+|+|+|..+++.|.+
T Consensus       125 ~~~~~~~~~iiatG--~~p~ip~ip~~~~l~l~~~gv~~~~~~~i~~d~~~~t~~~~i~~iG~g~~g~ela~~~~~~G~~  202 (217)
T d1gesa1         125 GETITADHILIATG--GRPSHPREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAVELTPVAVAAGRR  202 (217)
T ss_dssp             TEEEEEEEEEECCC--EEECCCEEESCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECSGGGTSCCCHHHHHHHHHH
T ss_pred             CceeeeeeeeeecC--ccccCCCCCCcCCcccccccEEEcCCccEeeCchhccCCCcEEEECCCccHHHHHHHHHHHHHH
Confidence            14789999999999  899999888765421    111111112111   123457899999999999999999888877


Q ss_pred             EE
Q 013303          223 VH  224 (446)
Q Consensus       223 V~  224 (446)
                      |+
T Consensus       203 v~  204 (217)
T d1gesa1         203 LS  204 (217)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.65  E-value=5.1e-16  Score=137.72  Aligned_cols=43  Identities=26%  Similarity=0.431  Sum_probs=40.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT   44 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~   44 (446)
                      .+||+||||||||+++|..+++.|.+|+|||+.+.+||.|.+.
T Consensus         3 ~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~~~   45 (221)
T d1dxla1           3 ENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNV   45 (221)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeeecc
Confidence            5899999999999999999999999999999999999998764

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.65  E-value=1.6e-16  Score=142.34  Aligned_cols=214  Identities=19%  Similarity=0.242  Sum_probs=126.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCC---CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCc-cCceeecCCCCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREG---HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSL-YKSLRVNLPREL   77 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g---~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~-y~~l~~~~~~~~   77 (446)
                      +.+|+||||||||++||.++++.|   ++|+++|+ ..+||+|.+.        ||+|+|.++.+.. +..++ +.+.  
T Consensus         1 ~~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk-~~~GG~cln~--------GciPsK~ll~~a~~~~~~~-~~~~--   68 (233)
T d1xdia1           1 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDC-DGIGGAAVLD--------DCVPSKTFIASTGLRTELR-RAPH--   68 (233)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEES-SCTTHHHHHT--------SHHHHHHHHHHHHHHHHHT-TTTT--
T ss_pred             CcEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEec-CCCCceeecc--------cccccEEEEeecchhhhhh-hhhh--
Confidence            468999999999999999988865   57999998 5799999875        8888876544322 21111 1111  


Q ss_pred             cccCCCCCCcCCCCCCCCCCCCCCHHHHHH-----------HHHHHHHHhCCCCcEEeCeEEEEEEEcC-CCceEEEEEe
Q 013303           78 MGFQAYPFVARNYEGSVDLRRYPGHEEVLR-----------YLQNFAREFGVDQVVRLHTEVLNARLVE-SNKWKVKSRK  145 (446)
Q Consensus        78 ~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~-----------yl~~~~~~~~l~~~i~~~~~V~~v~~~~-~~~~~v~~~~  145 (446)
                      +++ .+.+..          .-.....+.+           .+....+..++.  +..+ +..-+.... ....++....
T Consensus        69 ~G~-~i~~~~----------~~~d~~~~~~~~~~v~~~~~~~~~~~~~~~gV~--vi~G-~~~~~~~~~~~~~~~v~v~~  134 (233)
T d1xdia1          69 LGF-HIDFDD----------AKISLPQIHARVKTLAAAQSADITAQLLSMGVQ--VIAG-RGELIDSTPGLARHRIKATA  134 (233)
T ss_dssp             TTB-C----------------CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCE--EEES-EEEECCSSSCCSSEEEEEEC
T ss_pred             cCC-cccccC----------ceeeeeeeccccceeeeeeecceehhhccccee--EEEC-cccccccccccccceEEEEe
Confidence            110 000000          0011122222           233334444554  3332 211111111 1335666666


Q ss_pred             CCCceEEEEEcEEEEccCCCCCCccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEE
Q 013303          146 KDDVVEEETFDAVVVCNGHFSVPRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHI  225 (446)
Q Consensus       146 ~~~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l  225 (446)
                      .+++..++.+|.||+|||  +.|+.+.....       .+.                                       
T Consensus       135 ~dg~~~~i~ad~viiAtG--~~p~~~~~~~~-------~~~---------------------------------------  166 (233)
T d1xdia1         135 ADGSTSEHEADVVLVATG--ASPRILPSGSV-------PNT---------------------------------------  166 (233)
T ss_dssp             TTSCEEEEEESEEEECCC--EEECCCGGCEE-------ECC---------------------------------------
T ss_pred             cCCceeeeecceeeeecC--ccccccccccc-------ccc---------------------------------------
Confidence            666677899999999999  66665432000       000                                       


Q ss_pred             EEecCCccccccCCCCCCeeeccceeEEccCCcEEecCCcEEeecEEEEecCccCCCCCCCCCCeeeeCCCCcccccccc
Q 013303          226 ASRSVADETHEKQPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLETNGIVTVDDNRVGPLYKHV  305 (446)
Q Consensus       226 ~~r~~~~~~~~~~~~~~~v~~~~~v~~i~~~~~v~~~dG~~~~~D~vi~atG~~~~~~~l~~~g~i~~~~~~~~~l~~~~  305 (446)
                                .      .               +-+++            +|     =-+++.|.|.+|+.++       
T Consensus       167 ----------~------~---------------l~l~~------------~g-----v~~~~~G~I~vd~~~~-------  191 (233)
T d1xdia1         167 ----------S------G---------------LGLER------------VG-----IQLGRGNYLTVDRVSR-------  191 (233)
T ss_dssp             ----------S------S---------------SCTTT------------TT-----CCCBTTTBCCCCSSSB-------
T ss_pred             ----------c------c---------------cccch------------hh-----hcccCCCcCCcCCCcc-------
Confidence                      0      0               00000            00     0145678899998887       


Q ss_pred             cCCCCCCCeEEecCCCccC-chhHHHHHHHHHHHHHcCCCCCC
Q 013303          306 FPPVLAPGLSFVGIPQKVI-PFPFFELQSKWIASVLSGRIVLP  347 (446)
Q Consensus       306 ~~~~~~p~l~~iG~~~~~~-~~~~~~~qa~~~a~~l~g~~~lp  347 (446)
                         |+.|+||++|++.... ..+.+..|++.+|.++.|...-|
T Consensus       192 ---T~~~gIyA~GDv~~~~~l~~~A~~~g~~aa~~~~g~~~~p  231 (233)
T d1xdia1         192 ---TLATGIYAAGDCTGLLPLASVAAMQGRIAMYHALGEGVSP  231 (233)
T ss_dssp             ---CSSTTEEECSGGGTSCSCHHHHHHHHHHHHHHHTTCCCCC
T ss_pred             ---cCCCCEEEEEEeCCCchhHHHHHHHHHHHHHHHcCCCCCC
Confidence               6799999999986443 45688999999999999876555

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.61  E-value=6.5e-19  Score=160.90  Aligned_cols=53  Identities=25%  Similarity=0.511  Sum_probs=47.6

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSS   64 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~   64 (446)
                      +||+||||||||++||..+++.|++|+|+|+. .+||+|.+.        ||+|++.++.+.
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~-~~GGtc~n~--------gciPsK~l~~~~   54 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKS-RLGGTCVNV--------GCVPKKIMFNAA   54 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTHHHHHT--------SHHHHHHHHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecC-CCCCeEEee--------CCcchHHHHhhh
Confidence            79999999999999999999999999999985 699999875        899988776544

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.60  E-value=1.3e-16  Score=144.41  Aligned_cols=160  Identities=19%  Similarity=0.219  Sum_probs=94.2

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCC-----ccCCccCceeecC-C
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYP-----VHSSLYKSLRVNL-P   74 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~-----~~~~~y~~l~~~~-~   74 (446)
                      |.+||+||||||+||+||..|++.|++|+|||+++.+|+.+..............+...+     .....+....... .
T Consensus         1 M~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (251)
T d2i0za1           1 MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNN   80 (251)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCH
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhhhhh
Confidence            789999999999999999999999999999999999886543321110000000000000     0000000000000 0


Q ss_pred             CC---CcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceE-EEEEeCCCce
Q 013303           75 RE---LMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSRKKDDVV  150 (446)
Q Consensus        75 ~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~-v~~~~~~~~~  150 (446)
                      ..   .+.....++...  ..+...+......++.+.|.+.+++.|++  ++++++|+.|..++ +.+. |.++++.   
T Consensus        81 ~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~i~~~L~~~~~~~gv~--i~~~~~v~~i~~~~-~~~~~v~~~~g~---  152 (251)
T d2i0za1          81 EDIITFFENLGVKLKEE--DHGRMFPVSNKAQSVVDALLTRLKDLGVK--IRTNTPVETIEYEN-GQTKAVILQTGE---  152 (251)
T ss_dssp             HHHHHHHHHTTCCEEEC--GGGEEEETTCCHHHHHHHHHHHHHHTTCE--EECSCCEEEEEEET-TEEEEEEETTCC---
T ss_pred             HHHHHHHHhcCCccccc--cccceecccccHHHHHHHHHHHHHHcCCc--ccCCcEEEEEEEEC-CEEEEEEeCCCC---
Confidence            00   000001111110  00000112235578899999999999988  99999999999876 5443 5554443   


Q ss_pred             EEEEEcEEEEccCCCCCCc
Q 013303          151 EEETFDAVVVCNGHFSVPR  169 (446)
Q Consensus       151 ~~~~~d~VVvAtG~~s~p~  169 (446)
                       .+++|+||+|||..|.|.
T Consensus       153 -~i~a~~vI~AtGg~S~p~  170 (251)
T d2i0za1         153 -VLETNHVVIAVGGKSVPQ  170 (251)
T ss_dssp             -EEECSCEEECCCCSSSGG
T ss_pred             -eEecCeEEEccCCccccc
Confidence             799999999999877654

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.58  E-value=1.2e-15  Score=139.09  Aligned_cols=52  Identities=23%  Similarity=0.217  Sum_probs=45.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPV   61 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~   61 (446)
                      .+||+||||||+|+.+|..+++.|.+|+++|+.+.+||.|...        ||.|++.+.
T Consensus        42 ~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~n~--------GcvP~k~l~   93 (261)
T d1mo9a1          42 EYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHN--------ACVPHHLFS   93 (261)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHH--------SHHHHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccccc--------cccchHHHH
Confidence            4689999999999999999999999999999999999998765        677765433

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=1.3e-15  Score=136.40  Aligned_cols=48  Identities=19%  Similarity=0.148  Sum_probs=39.2

Q ss_pred             CCeeeeCCCCcccccccccCCCCCCCeEEecCCCccC--chhHHHHHHHHHHHHHcCCCC
Q 013303          288 NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI--PFPFFELQSKWIASVLSGRIV  345 (446)
Q Consensus       288 ~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~--~~~~~~~qa~~~a~~l~g~~~  345 (446)
                      .|.|.+|++++          |+.|+||++|++....  ..+.+..|++.+|+++.|..+
T Consensus       182 ~g~I~vd~~~~----------TsvpgIyA~GDv~~g~~~l~~~A~~eG~~aa~~~~g~~~  231 (235)
T d1h6va1         182 TGKIPVTDEEQ----------TNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRLYGGST  231 (235)
T ss_dssp             SCCBCCCTTSB----------CSSTTEEECGGGBTTSCCCHHHHHHHHHHHHHHHHHCCC
T ss_pred             cCccccCCccc----------cCCCCEEEEEeccCCCcccHHHHHHHHHHHHHHHcCCCC
Confidence            47799999988          7899999999986432  357899999999999987543

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.57  E-value=1.6e-15  Score=134.56  Aligned_cols=42  Identities=31%  Similarity=0.516  Sum_probs=38.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT   44 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~   44 (446)
                      .+||+||||||||++||..+++.|.+|+|||+. .+||+|...
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~-~~GG~~~~~   44 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCLNV   44 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecC-CCCcceecc
Confidence            589999999999999999999999999999995 689988764

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.55  E-value=1.9e-15  Score=137.08  Aligned_cols=157  Identities=20%  Similarity=0.379  Sum_probs=89.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCC--CCCCCCCCCCcc--CCccCceeecCCCCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESD--PLGVDPNRYPVH--SSLYKSLRVNLPREL   77 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~--~~g~~p~~~~~~--~~~y~~l~~~~~~~~   77 (446)
                      .+||+|||||||||+||..|++.|++|+|||+.+.+|+.+........+  .....|......  ..+...+....+...
T Consensus         4 ~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~~~~~~   83 (253)
T d2gqfa1           4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDF   83 (253)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhhhcccch
Confidence            4799999999999999999999999999999999887432211100000  000000000000  000000000000000


Q ss_pred             ccc---CCCCCCcCCCCCCCCCCCCC--CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceE--EEEEeCCCce
Q 013303           78 MGF---QAYPFVARNYEGSVDLRRYP--GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK--VKSRKKDDVV  150 (446)
Q Consensus        78 ~~~---~d~~~~~~~~~~~~~~~~~~--~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~--v~~~~~~~~~  150 (446)
                      +.+   ...++...     .....|+  ...++.+.|.+.+++.+++  |+++++|+++.+.++ .+.  +.+....   
T Consensus        84 ~~~~~~~g~~~~~~-----~~~~~~~~~~a~~i~~~L~~~~~~~gV~--i~~~~~V~~i~~~~~-~~~v~~~~~~~~---  152 (253)
T d2gqfa1          84 ISLVAEQGITYHEK-----ELGQLFCDEGAEQIVEMLKSECDKYGAK--ILLRSEVSQVERIQN-DEKVRFVLQVNS---  152 (253)
T ss_dssp             HHHHHHTTCCEEEC-----STTEEEETTCTHHHHHHHHHHHHHHTCE--EECSCCEEEEEECCS-CSSCCEEEEETT---
T ss_pred             hhhhhhcCcceeee-----cCCccccccchhHHHHHHHHHHHHcCCC--eecCceEEEEEeecC-CceeEEEEecCC---
Confidence            000   01111110     0011122  3578999999999999998  999999999998763 332  2222222   


Q ss_pred             EEEEEcEEEEccCCCCCCc
Q 013303          151 EEETFDAVVVCNGHFSVPR  169 (446)
Q Consensus       151 ~~~~~d~VVvAtG~~s~p~  169 (446)
                      .++++|+||+|||..+.|.
T Consensus       153 ~~~~a~~VIiAtGG~S~p~  171 (253)
T d2gqfa1         153 TQWQCKNLIVATGGLSMPG  171 (253)
T ss_dssp             EEEEESEEEECCCCSSCGG
T ss_pred             EEEEeCEEEEcCCcccccc
Confidence            3799999999999766554

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.54  E-value=1.1e-14  Score=125.03  Aligned_cols=135  Identities=16%  Similarity=0.115  Sum_probs=97.5

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCcc------cc----------ccC----CCC--CCeeeccceeEEcc
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADE------TH----------EKQ----PGY--DNMWLHSMVERANE  255 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~~------~~----------~~~----~~~--~~v~~~~~v~~i~~  255 (446)
                      ++|+|||+|++|+|+|..|++.+.+|+++.+++...      .+          ..+    ...  ..+.....++++..
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~~   83 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFDP   83 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEETCCEEEEET
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEEecccccccc
Confidence            469999999999999999999998877776654310      00          000    011  13445567888865


Q ss_pred             CC-cEEecCCcEEeecEEEEecCccCCCCCCC----------CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCcc-
Q 013303          256 DG-TVVFRNGRVVSADVIMHCTGYKYNYPFLE----------TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-  323 (446)
Q Consensus       256 ~~-~v~~~dG~~~~~D~vi~atG~~~~~~~l~----------~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-  323 (446)
                      +. .+.++||+++++|.+|+|||..|+..+++          .++.|.+|++++          ++.|+||++|++... 
T Consensus        84 ~~~~~~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~gl~~~~~I~vd~~~~----------ts~~~IyA~GD~a~~~  153 (183)
T d1d7ya1          84 QAHTVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGLACDDGIFVDAYGR----------TTCPDVYALGDVTRQR  153 (183)
T ss_dssp             TTTEEEETTSCEEECSEEEECCCEEECCEEECCHHHHHTTCCBSSSEECCTTCB----------CSSTTEEECGGGEEEE
T ss_pred             ccceeEecCCcEeeeeeEEEEEEEEcccccccccccceeeEeeCCcEEecccee----------ccccccchhhhhhccc
Confidence            54 48899999999999999999999865532          234477787766          568999999987521 


Q ss_pred             ----------CchhHHHHHHHHHHHHHcC
Q 013303          324 ----------IPFPFFELQSKWIASVLSG  342 (446)
Q Consensus       324 ----------~~~~~~~~qa~~~a~~l~g  342 (446)
                                .....+..||+.+|++|..
T Consensus       154 ~~~~g~~~~~~~~~~A~~qg~~aa~nil~  182 (183)
T d1d7ya1         154 NPLSGRFERIETWSNAQNQGIAVARHLVD  182 (183)
T ss_dssp             CTTTCSEEECCCHHHHHHHHHHHHHHHHC
T ss_pred             eeeCCceechhHHHHHHHHHHHHHHHHcC
Confidence                      1345688999999999853

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.1e-15  Score=132.55  Aligned_cols=51  Identities=25%  Similarity=0.408  Sum_probs=43.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPV   61 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~   61 (446)
                      .+||+||||||+|++||..+++.|.+|+|+|+ ..+||.|.+.        ||.|++.++
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk-~~~GG~c~n~--------g~~~~k~l~   53 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGARAAVVES-HKLGGTCVNV--------GCVPKKVMW   53 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHHHH--------SHHHHHHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCEEEEEec-cCCCCccccc--------hhhhhhhhh
Confidence            48999999999999999999999999999998 5689988764        566555443

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.52  E-value=4.3e-15  Score=131.65  Aligned_cols=51  Identities=24%  Similarity=0.392  Sum_probs=44.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPV   61 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~   61 (446)
                      ++||+||||||+|+.||..+++.|.+|+|+|+. .+||+|.+.        ||.|++.+.
T Consensus         5 ~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~-~~GG~c~~~--------gc~p~k~~~   55 (220)
T d1lvla1           5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ-ALGGTCLNI--------GCIPSKALI   55 (220)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS-CTTHHHHHH--------SHHHHHHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCCccccc--------ccccchhhh
Confidence            589999999999999999999999999999985 699999875        676665443

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.51  E-value=4.1e-14  Score=121.41  Aligned_cols=138  Identities=19%  Similarity=0.232  Sum_probs=97.3

Q ss_pred             CCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc-------cccccCCC----CC---------------Ceeeccc
Q 013303          196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD-------ETHEKQPG----YD---------------NMWLHSM  249 (446)
Q Consensus       196 ~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~-------~~~~~~~~----~~---------------~v~~~~~  249 (446)
                      ++++|+|||+|++|+|+|..|++.+.+|+++.+.+..       .....+..    ..               .+.....
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQ   81 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhcccceeeeccce
Confidence            4689999999999999999999999998888776541       00000000    00               1111223


Q ss_pred             eeEEccCC-cEEecCCcEEeecEEEEecCccCCCCCC--------CCCCeeeeCCCCcccccccccCCCCCCCeEEecCC
Q 013303          250 VERANEDG-TVVFRNGRVVSADVIMHCTGYKYNYPFL--------ETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIP  320 (446)
Q Consensus       250 v~~i~~~~-~v~~~dG~~~~~D~vi~atG~~~~~~~l--------~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~  320 (446)
                      +..+..+. .+.+.++.++++|.+++++|.+|..|.+        ..++.+.+|++++          ++.|++|++|++
T Consensus        82 ~~~~~~~~~~v~~~~~~~i~~d~~i~~~G~~~~~~~~~~~~~~~~~~~~~i~Vd~~~~----------ts~~~vya~GD~  151 (185)
T d1q1ra1          82 VTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPNCELASAAGLQVDNGIVINEHMQ----------TSDPLIMAVGDC  151 (185)
T ss_dssp             EEEEETTTTEEEETTSCEEECSEEEECCCEEEEEECCHHHHHTTCCBSSSEECCTTSB----------CSSTTEEECGGG
T ss_pred             eeeecccccEEEeeceeEEEeeeeeeeeecccCCCCchhHHhCCccccCccccCCccc----------cchhhhhcchhh
Confidence            34443333 3888899999999999999998765543        3345577777766          568999999986


Q ss_pred             Ccc-----------CchhHHHHHHHHHHHHHcCC
Q 013303          321 QKV-----------IPFPFFELQSKWIASVLSGR  343 (446)
Q Consensus       321 ~~~-----------~~~~~~~~qa~~~a~~l~g~  343 (446)
                      ...           ...+.+..||+.+|++|+|+
T Consensus       152 ~~~~~~~~~~~~~~~~a~~A~~~g~~aa~~i~G~  185 (185)
T d1q1ra1         152 ARFHSQLYDRWVRIESVPNALEQARKIAAILCGK  185 (185)
T ss_dssp             EEEEETTTTEEEECCSHHHHHHHHHHHHHHHTTC
T ss_pred             hccccccCCcccchhhHHHHHHHHHHHHHHccCC
Confidence            432           23567899999999999986

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.50  E-value=6.3e-14  Score=118.24  Aligned_cols=133  Identities=18%  Similarity=0.192  Sum_probs=96.5

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecCCcc--------cccc------CCCC---------CCeeeccceeEEcc
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVADE--------THEK------QPGY---------DNMWLHSMVERANE  255 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~~--------~~~~------~~~~---------~~v~~~~~v~~i~~  255 (446)
                      ||+|||+|++|+|+|..|++ +.+|+++.+.+...        .+..      +...         .++.....++.++.
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~   80 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLIDR   80 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEEET
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEeccccccccccchhhhhhhhhhhhhhhHHHHHHHHhccceeeeecccccccc
Confidence            79999999999999999976 56999998865410        0100      0000         13444567888877


Q ss_pred             CCcEEecCCcEEeecEEEEecCccCCCCC-----CCCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCcc-----Cc
Q 013303          256 DGTVVFRNGRVVSADVIMHCTGYKYNYPF-----LETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-----IP  325 (446)
Q Consensus       256 ~~~v~~~dG~~~~~D~vi~atG~~~~~~~-----l~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-----~~  325 (446)
                      +..+.+.+++++++|.+|+|+|..|+ ++     +..+..+.+|++++          ++.|++|++|++...     ..
T Consensus        81 ~~~~~~~~~~~i~~D~li~a~G~~~~-~~~~~~gl~~~~~i~v~~~~~----------t~~~~i~aiGD~~~~~~~~~~~  149 (167)
T d1xhca1          81 GRKVVITEKGEVPYDTLVLATGAPNV-DLARRSGIHTGRGILIDDNFR----------TSAKDVYAIGDCAEYSGIIAGT  149 (167)
T ss_dssp             TTTEEEESSCEEECSEEEECCCEECC-HHHHHTTCCBSSSEECCTTSB----------CSSTTEEECGGGEEBTTBCCCS
T ss_pred             ccccccccccccccceeEEEEEecCC-chhhhcCceeCCceeeccccE----------ecCCCeEEeeecccCCCeEECh
Confidence            76788899999999999999999875 33     22223366666665          558999999987532     23


Q ss_pred             hhHHHHHHHHHHHHHcCC
Q 013303          326 FPFFELQSKWIASVLSGR  343 (446)
Q Consensus       326 ~~~~~~qa~~~a~~l~g~  343 (446)
                      .+.+..||+.+|++|+|+
T Consensus       150 ~~~a~~~a~~~a~~i~Ge  167 (167)
T d1xhca1         150 AKAAMEQARVLADILKGE  167 (167)
T ss_dssp             HHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHcCCC
Confidence            457788999999999884

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=1.2e-13  Score=108.88  Aligned_cols=96  Identities=18%  Similarity=0.177  Sum_probs=81.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      +++|+|||||+.|+.+|..|++.|.+|+++|+.+++...                                         
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~-----------------------------------------   59 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS-----------------------------------------   59 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-----------------------------------------
T ss_pred             CCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhh-----------------------------------------
Confidence            478999999999999999999999999999997644110                                         


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                       +  .+++.+++.+..++.|++  ++++++|+.+...+++..+++++++.    ++.+|.||+|
T Consensus        60 -----------------~--d~~~~~~~~~~l~~~GV~--~~~~~~v~~i~~~~~~~~~v~~~~g~----~~~~D~vi~a  114 (116)
T d1gesa2          60 -----------------F--DPMISETLVEVMNAEGPQ--LHTNAIPKAVVKNTDGSLTLELEDGR----SETVDCLIWA  114 (116)
T ss_dssp             -----------------S--CHHHHHHHHHHHHHHSCE--EECSCCEEEEEECTTSCEEEEETTSC----EEEESEEEEC
T ss_pred             -----------------c--chhhHHHHHHHHHHCCCE--EEeCCEEEEEEEcCCcEEEEEECCCC----EEEcCEEEEe
Confidence                             0  157889999999999998  99999999999876566777776654    7899999999


Q ss_pred             cC
Q 013303          162 NG  163 (446)
Q Consensus       162 tG  163 (446)
                      +|
T Consensus       115 ~G  116 (116)
T d1gesa2         115 IG  116 (116)
T ss_dssp             SC
T ss_pred             cC
Confidence            98

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.42  E-value=1.2e-13  Score=122.96  Aligned_cols=43  Identities=26%  Similarity=0.420  Sum_probs=40.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT   44 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~   44 (446)
                      .+||+|||||||||+||..|++.|++|+|||+.+.+||.+...
T Consensus         6 dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~~~~~   48 (229)
T d1ojta1           6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNV   48 (229)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHH
T ss_pred             ccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeecc
Confidence            3799999999999999999999999999999999999988764

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.42  E-value=1.7e-15  Score=135.79  Aligned_cols=148  Identities=16%  Similarity=0.092  Sum_probs=91.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCC-------CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREG-------HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLP   74 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g-------~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~   74 (446)
                      +++|+|||||||||+||..|+++|       ++|+|||+.+.+||.|++.-         .                   
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi---------~-------------------   53 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGV---------A-------------------   53 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTS---------C-------------------
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeecc---------C-------------------
Confidence            569999999999999999999987       47999999999999998731         0                   


Q ss_pred             CCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEE
Q 013303           75 RELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEET  154 (446)
Q Consensus        75 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~  154 (446)
                                            +.+.....+.++........++.  +++|++|.....         .     +.....
T Consensus        54 ----------------------p~~~~~~~~~~~~~~~~~~~g~~--~~~~~~v~~~~~---------~-----~~~~~~   95 (239)
T d1lqta2          54 ----------------------PDHPKIKSISKQFEKTAEDPRFR--FFGNVVVGEHVQ---------P-----GELSER   95 (239)
T ss_dssp             ----------------------TTCTGGGGGHHHHHHHHTSTTEE--EEESCCBTTTBC---------H-----HHHHHH
T ss_pred             ----------------------cccccchhhhhhhhhhhccCCce--EEEEEEeccccc---------h-----hhhhcc
Confidence                                  11111234455555556666655  666655421000         0     001235


Q ss_pred             EcEEEEccCCCCCCccCCCCCCCCC---Cc-cEEEeeecCCCC------CCCCCEEEEEecCCcHHHHHHHHh
Q 013303          155 FDAVVVCNGHFSVPRLAQVPGIDSW---PG-KQMHSHNYRIPN------PFQDQVVILIGHYASGLDIKRDLA  217 (446)
Q Consensus       155 ~d~VVvAtG~~s~p~~p~i~G~~~~---~g-~~~hs~~~~~~~------~~~~k~VvVVG~G~sg~eia~~l~  217 (446)
                      ||+|++|||.  .+..+.++|.+..   .. ............      ...+++++|+|+|..++|++..+.
T Consensus        96 ~~~v~~atGa--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vv~g~g~~a~d~a~~~v  166 (239)
T d1lqta2          96 YDAVIYAVGA--QSRGVPTPGLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTLI  166 (239)
T ss_dssp             SSEEEECCCC--CEECCCCTTSCCBTTTTBCCEETTEETTCSSEEECTHHHHCSCSCTTHHHHHHHHHHHHHH
T ss_pred             ccceeeecCC--CccccccccccccccccchhhhhhhhccccccccceeecCCCEEEEeCCCchHHHHHHHHH
Confidence            9999999994  4555555554321   10 011110000010      123678889999999999887654

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.41  E-value=3.8e-13  Score=114.82  Aligned_cols=145  Identities=17%  Similarity=0.137  Sum_probs=92.9

Q ss_pred             CCCEEEEEecCCcHHHHHHHHhccC--CEEEEEEecCCc------ccc-------ccC-------CCCCCeeeccceeEE
Q 013303          196 QDQVVILIGHYASGLDIKRDLAGFA--KEVHIASRSVAD------ETH-------EKQ-------PGYDNMWLHSMVERA  253 (446)
Q Consensus       196 ~~k~VvVVG~G~sg~eia~~l~~~~--~~V~l~~r~~~~------~~~-------~~~-------~~~~~v~~~~~v~~i  253 (446)
                      .||||+|||+|++|+++|..|.+.+  .+|+++++.+..      ..+       ...       ...........+..+
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   80 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDSATGI   80 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECCCEEEC
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccceeEeeeeeEee
Confidence            4899999999999999999999876  479999877640      000       000       000111112233333


Q ss_pred             ccC-CcEEecCCcEEeecEEEEecCccCCCCCCCCCCe-------eeeCCCCcccccccccCCCCCCCeEEecCCCccCc
Q 013303          254 NED-GTVVFRNGRVVSADVIMHCTGYKYNYPFLETNGI-------VTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVIP  325 (446)
Q Consensus       254 ~~~-~~v~~~dG~~~~~D~vi~atG~~~~~~~l~~~g~-------i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~~  325 (446)
                      ... ..+.+.+++++++|.+|+|||.+++.+++.....       +..+... .+...+.+..+..|++|++|+.....+
T Consensus        81 ~~~~~~~~~~~~~~i~~D~li~atG~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~iGd~~~~~~  159 (186)
T d1fcda1          81 DPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQIAGLTNDAGW-CPVDIKTFESSIHKGIHVIGDASIANP  159 (186)
T ss_dssp             CTTTTEEEETTSCEEECSEEEECCCEEECCTTSTEEECHHHHHHTCCCTTSS-EEBCSSSCBBSSSTTEEECTTSEECTT
T ss_pred             eeccceeecccceeeccceEEEEeccccchhhhhhhhhhheeccCccccccc-ccceeeeeecccccCceEeccccccCC
Confidence            322 3377889999999999999999999988753211       1112211 123333333345899999998753322


Q ss_pred             ----hhHHHHHHHHHHHHHc
Q 013303          326 ----FPFFELQSKWIASVLS  341 (446)
Q Consensus       326 ----~~~~~~qa~~~a~~l~  341 (446)
                          ...+..||+.+|+++.
T Consensus       160 ~p~~~~~A~~q~~~~A~ni~  179 (186)
T d1fcda1         160 MPKSGYSANSQGKVAAAAVV  179 (186)
T ss_dssp             CCSSHHHHHHHHHHHHHHHH
T ss_pred             CCchHhHHHHHHHHHHHHHH
Confidence                4567889999999875

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.40  E-value=1.2e-14  Score=129.61  Aligned_cols=43  Identities=28%  Similarity=0.470  Sum_probs=40.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYT   44 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~   44 (446)
                      ++||+||||||||++||.+|++.|.+|+|||+.+.+||+|.+.
T Consensus         5 ~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~~~~   47 (233)
T d1v59a1           5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNV   47 (233)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceEeEEe
Confidence            5799999999999999999999999999999999999999875

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.39  E-value=3.1e-12  Score=100.96  Aligned_cols=98  Identities=27%  Similarity=0.360  Sum_probs=82.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      +++++|||||+.|+..|..|++.|.+|+++|+.+++.                                           
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll-------------------------------------------   58 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFL-------------------------------------------   58 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS-------------------------------------------
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccC-------------------------------------------
Confidence            5789999999999999999999999999999976441                                           


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                        |.             +  .+++.++++++.++.|+.  ++++++|++++..+ +.-+|++.++. ..+++.||.|++|
T Consensus        59 --~~-------------~--d~ei~~~l~~~l~~~Gv~--i~~~~~v~~i~~~~-~~v~v~~~~~~-~~~~~~~D~vlvA  117 (119)
T d3lada2          59 --PA-------------V--DEQVAKEAQKILTKQGLK--ILLGARVTGTEVKN-KQVTVKFVDAE-GEKSQAFDKLIVA  117 (119)
T ss_dssp             --TT-------------S--CHHHHHHHHHHHHHTTEE--EEETCEEEEEEECS-SCEEEEEESSS-EEEEEEESEEEEC
T ss_pred             --Cc-------------c--cchhHHHHHHHHHhcCce--eecCcEEEEEEEeC-CEEEEEEEECC-CCEEEECCEEEEe
Confidence              00             0  168899999999999998  99999999999877 66778877654 3457899999999


Q ss_pred             cC
Q 013303          162 NG  163 (446)
Q Consensus       162 tG  163 (446)
                      +|
T Consensus       118 vG  119 (119)
T d3lada2         118 VG  119 (119)
T ss_dssp             SC
T ss_pred             eC
Confidence            98

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.39  E-value=8e-14  Score=124.98  Aligned_cols=52  Identities=12%  Similarity=0.056  Sum_probs=42.4

Q ss_pred             CCCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCCCCC
Q 013303          285 LETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGRIVL  346 (446)
Q Consensus       285 l~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~~~l  346 (446)
                      +++.|.|.+|++++          |+.|+||++|++... ...+.+..|++.+|+++.|..+.
T Consensus       185 ~~~~G~I~vd~~~~----------Ts~~~iyA~GDv~~~~~~~~~A~~eg~~aa~~~~~~~~~  237 (240)
T d1feca1         185 VAKNGAIKVDAYSK----------TNVDNIYAIGDVTDRVMLTPVAINEGAAFVDTVFANKPR  237 (240)
T ss_dssp             BCTTSCBCCCTTCB----------CSSTTEEECGGGGCSCCCHHHHHHHHHHHHHHHHSSCCC
T ss_pred             ECCCCcEEcCcccC----------cCCCCEEEEEECCCCccchhhHHHHHHHHHHHHhCCCCC
Confidence            56678899998877          779999999998644 34578999999999999886554

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.39  E-value=1.3e-13  Score=109.33  Aligned_cols=104  Identities=13%  Similarity=0.186  Sum_probs=75.9

Q ss_pred             cCCCCCCCCCCccEEEeeecCCCC-----CCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc------c----c
Q 013303          170 LAQVPGIDSWPGKQMHSHNYRIPN-----PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD------E----T  234 (446)
Q Consensus       170 ~p~i~G~~~~~g~~~hs~~~~~~~-----~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~------~----~  234 (446)
                      +|++||.+.   .+...+...+..     .-.+++|+|||+|.+|+|+|..|++.+.+|+++.+++..      .    .
T Consensus         1 iP~ipG~~~---~v~~lrtl~Da~~l~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~   77 (121)
T d1d7ya2           1 LPTLQGATM---PVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADF   77 (121)
T ss_dssp             CGGGTTCSS---CEEECCSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHH
T ss_pred             CccCCCCCC---CEEEeCCHHHHHHHHHhhhcCCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccccCCHHHHHH
Confidence            588999874   232222211111     124689999999999999999999999999999998751      1    1


Q ss_pred             c-ccCCCCC-CeeeccceeEEccCCcEEecCCcEEeecEEEEecC
Q 013303          235 H-EKQPGYD-NMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTG  277 (446)
Q Consensus       235 ~-~~~~~~~-~v~~~~~v~~i~~~~~v~~~dG~~~~~D~vi~atG  277 (446)
                      + +.+.+.+ ++..+..|+++.. +.++++||+++++|.||+|+|
T Consensus        78 ~~~~l~~~GV~i~~~~~v~~~~~-~~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          78 VARYHAAQGVDLRFERSVTGSVD-GVVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             HHHHHHTTTCEEEESCCEEEEET-TEEEETTSCEEECSEEEECSC
T ss_pred             HHHHHHHCCcEEEeCCEEEEEeC-CEEEECCCCEEECCEEEEeeC
Confidence            1 1122233 5677888999865 469999999999999999998

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.38  E-value=7.3e-14  Score=123.93  Aligned_cols=38  Identities=29%  Similarity=0.272  Sum_probs=34.4

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcC
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG   38 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G   38 (446)
                      +++||+|||||||||+||..|++.|++|+|||+....+
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~   39 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKE   39 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCC
Confidence            47899999999999999999999999999999865443

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.37  E-value=6.6e-12  Score=98.87  Aligned_cols=96  Identities=19%  Similarity=0.253  Sum_probs=80.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      +++|+|||||+.|+.+|..|++.|.+|+|+|+.+++...                                         
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~-----------------------------------------   60 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG-----------------------------------------   60 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-----------------------------------------
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEEEecceeccc-----------------------------------------
Confidence            579999999999999999999999999999998755211                                         


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                       +  ..++.+++.+..++.|++  ++++++|++++..+ +..++++..+ ++.+++.+|.|++.
T Consensus        61 -----------------~--d~~~~~~l~~~l~~~GI~--i~~~~~v~~i~~~~-~~~~v~~~~~-g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          61 -----------------F--EKQMAAIIKKRLKKKGVE--VVTNALAKGAEERE-DGVTVTYEAN-GETKTIDADYVLVT  117 (117)
T ss_dssp             -----------------S--CHHHHHHHHHHHHHTTCE--EEESEEEEEEEEET-TEEEEEEEET-TEEEEEEESEEEEC
T ss_pred             -----------------c--cchhHHHHHHHHHhcCCE--EEcCCEEEEEEEcC-CEEEEEEEeC-CCEEEEEeEEEEEC
Confidence                             0  157889999999999998  99999999999877 6677777653 44568999999984

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.37  E-value=2.2e-14  Score=124.31  Aligned_cols=43  Identities=33%  Similarity=0.473  Sum_probs=39.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCCCcCceeeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQVGGSWIYT   44 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~~~GG~w~~~   44 (446)
                      .++|+||||||+||+||..|++.|+ +|+|||+.+.+||.|.+.
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~~   47 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSE   47 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHT
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhhh
Confidence            5899999999999999999999998 599999999999988763

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.7e-12  Score=113.88  Aligned_cols=136  Identities=13%  Similarity=0.066  Sum_probs=96.5

Q ss_pred             CEEEEEecCCcHHHHHHHHhccC--CEEEEEEecCCcc----cc------------------------------------
Q 013303          198 QVVILIGHYASGLDIKRDLAGFA--KEVHIASRSVADE----TH------------------------------------  235 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~--~~V~l~~r~~~~~----~~------------------------------------  235 (446)
                      .+++|||+|..|+++|..|.+.+  .+|+++.+.+...    .+                                    
T Consensus         5 ~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (213)
T d1m6ia1           5 VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFY   84 (213)
T ss_dssp             EEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGGGS
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhcccchhhhhcCChhhh
Confidence            57899999999999999998764  4799987643200    00                                    


Q ss_pred             ------ccCCCCC-CeeeccceeEEccCC-cEEecCCcEEeecEEEEecCccCCCCCC---------CCCCeeeeCCCCc
Q 013303          236 ------EKQPGYD-NMWLHSMVERANEDG-TVVFRNGRVVSADVIMHCTGYKYNYPFL---------ETNGIVTVDDNRV  298 (446)
Q Consensus       236 ------~~~~~~~-~v~~~~~v~~i~~~~-~v~~~dG~~~~~D~vi~atG~~~~~~~l---------~~~g~i~~~~~~~  298 (446)
                            ..+.+.+ ++.....|++++.+. .|.++||+++++|.+|+|||..|+.+.|         +..+.|.+|+.++
T Consensus        85 ~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~V~l~dG~~i~~d~lViAtG~~~~~~~l~~~~gl~~~~~~~~i~vd~~l~  164 (213)
T d1m6ia1          85 VSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTEPNVELAKTGGLEIDSDFGGFRVNAELQ  164 (213)
T ss_dssp             BCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEEECCTTHHHHTCCBCTTTCSEECCTTCE
T ss_pred             hhhhhHHHHHHCCeEEEeCCEEEEeeccCceeeeccceeeccceEEEeeeeecchhhhhhccchhhhhhhhhhhhhHhcC
Confidence                  0000111 345567888986543 4999999999999999999987665433         2334577777665


Q ss_pred             ccccccccCCCCCCCeEEecCCCcc----------CchhHHHHHHHHHHHHHcCCC
Q 013303          299 GPLYKHVFPPVLAPGLSFVGIPQKV----------IPFPFFELQSKWIASVLSGRI  344 (446)
Q Consensus       299 ~~l~~~~~~~~~~p~l~~iG~~~~~----------~~~~~~~~qa~~~a~~l~g~~  344 (446)
                                + .|+||++|++...          ...+.+..||+.+|++|+|..
T Consensus       165 ----------~-~~~VyA~GD~a~~~~~~~g~~~i~~~~~A~~~gr~aa~ni~g~~  209 (213)
T d1m6ia1         165 ----------A-RSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAA  209 (213)
T ss_dssp             ----------E-ETTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHTSCC
T ss_pred             ----------c-CCceEEeeeeeeeccccCCcEEeeEhHHHHHHHHHHHHHhcCCC
Confidence                      5 4899999976421          224678899999999999974

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.35  E-value=2.1e-13  Score=108.65  Aligned_cols=109  Identities=23%  Similarity=0.318  Sum_probs=87.0

Q ss_pred             ccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC----ccccccCCCCC--
Q 013303          169 RLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETHEKQPGYD--  242 (446)
Q Consensus       169 ~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~----~~~~~~~~~~~--  242 (446)
                      +.+++||.+.|.|+.+|.+..+++..|+||+|+|||+|.||+|.|..|++.+++||+++|++.    ....+++...+  
T Consensus         2 R~L~ipge~~~~gkGV~yca~cD~~~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~~~~~~~~~~~~~~I   81 (126)
T d1fl2a2           2 RNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKLRSLKNV   81 (126)
T ss_dssp             CCCCCTTTTTTBTTTEESCHHHHGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCSCHHHHHHHHTCTTE
T ss_pred             CcCCCCCHHHhcCCCEEEEEecChhhcCCceEEEEeCCHHHHHHHHhhhccCCceEEEecccccccccccccccccccce
Confidence            456899999999999998888888899999999999999999999999999999999999875    12223333334  


Q ss_pred             CeeeccceeEEccCC-c---EEecC---Cc--EEeecEEEEecC
Q 013303          243 NMWLHSMVERANEDG-T---VVFRN---GR--VVSADVIMHCTG  277 (446)
Q Consensus       243 ~v~~~~~v~~i~~~~-~---v~~~d---G~--~~~~D~vi~atG  277 (446)
                      .+..+..|.++.+++ .   +.+.|   |+  ++++|.|+++.|
T Consensus        82 ~v~~~~~v~~i~G~~~~v~~v~l~~~~tge~~~l~vdgvFv~IG  125 (126)
T d1fl2a2          82 DIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIG  125 (126)
T ss_dssp             EEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred             eEEcCcceEEEEccccceeeEEEEECCCCCEEEEECCEEEEEeC
Confidence            455677888888753 3   55654   43  488999999988

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.33  E-value=2.5e-12  Score=102.18  Aligned_cols=99  Identities=19%  Similarity=0.206  Sum_probs=83.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++++|||||+.|+.+|..+++.|.+|+++|+.+.+...+                                        
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~~----------------------------------------   65 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGA----------------------------------------   65 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTS----------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccccc----------------------------------------
Confidence            5789999999999999999999999999999976541110                                        


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                          ..++.+++.+..++.|+.  ++++++|.+++..+ ++..|++....+..+++.+|.|++|
T Consensus        66 --------------------d~~~~~~l~~~l~~~gv~--~~~~~~v~~v~~~~-~g~~v~~~~~~g~~~~i~~D~vl~A  122 (125)
T d1ojta2          66 --------------------DRDLVKVWQKQNEYRFDN--IMVNTKTVAVEPKE-DGVYVTFEGANAPKEPQRYDAVLVA  122 (125)
T ss_dssp             --------------------CHHHHHHHHHHHGGGEEE--EECSCEEEEEEEET-TEEEEEEESSSCCSSCEEESCEEEC
T ss_pred             --------------------hhhHHHHHHHHHHHcCcc--cccCcEEEEEEEcC-CcEEEEEEeCCCCeEEEEcCEEEEe
Confidence                                158899999999999988  99999999999877 5567777766555567999999999


Q ss_pred             cC
Q 013303          162 NG  163 (446)
Q Consensus       162 tG  163 (446)
                      +|
T Consensus       123 ~G  124 (125)
T d1ojta2         123 AG  124 (125)
T ss_dssp             CC
T ss_pred             cC
Confidence            99

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.33  E-value=2.5e-12  Score=117.31  Aligned_cols=62  Identities=21%  Similarity=0.138  Sum_probs=52.0

Q ss_pred             CCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303           98 RYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus        98 ~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      .......+...|.+.+++.|+.  ++.+++|+.|.+.+ +.|.|.+.++     ++.||.||+|+|.++.
T Consensus       146 g~i~~~~~~~~l~~~~~~~Gv~--i~~~~~V~~i~~~~-~~~~V~t~~g-----~i~a~~vV~AaG~~s~  207 (276)
T d1ryia1         146 VHVEPYFVCKAYVKAAKMLGAE--IFEHTPVLHVERDG-EALFIKTPSG-----DVWANHVVVASGVWSG  207 (276)
T ss_dssp             CBCCHHHHHHHHHHHHHHTTCE--EETTCCCCEEECSS-SSEEEEETTE-----EEEEEEEEECCGGGTH
T ss_pred             eeeecccchhHHHHHHHHcCCE--EecceEEEeEEeec-ceEEEecCCe-----EEEcCEEEECCCccHH
Confidence            3556788889999999999988  99999999999876 6788877553     6899999999998663

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.33  E-value=2.2e-12  Score=111.87  Aligned_cols=137  Identities=15%  Similarity=0.156  Sum_probs=94.5

Q ss_pred             EEEEEecCCcHHHHHHHHhcc--CCEEEEEEecCCccc---------------cccC--------CC-CCCeeeccceeE
Q 013303          199 VVILIGHYASGLDIKRDLAGF--AKEVHIASRSVADET---------------HEKQ--------PG-YDNMWLHSMVER  252 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~--~~~V~l~~r~~~~~~---------------~~~~--------~~-~~~v~~~~~v~~  252 (446)
                      +|+|||+|++|+|+|..|++.  ..+|++++|.+....               ...+        .+ ..++++...|.+
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V~~   81 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEITA   81 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccccccCcchhhcccccchHHHHHhhHHHHHHCCcEEEEeeceee
Confidence            799999999999999999987  457999988653100               0111        01 114566778999


Q ss_pred             EccCCc-EEe---cCCcE--EeecEEEEecCccCC--------CCC------CCCCCeeeeCCCCcccccccccCCCCCC
Q 013303          253 ANEDGT-VVF---RNGRV--VSADVIMHCTGYKYN--------YPF------LETNGIVTVDDNRVGPLYKHVFPPVLAP  312 (446)
Q Consensus       253 i~~~~~-v~~---~dG~~--~~~D~vi~atG~~~~--------~~~------l~~~g~i~~~~~~~~~l~~~~~~~~~~p  312 (446)
                      ++.++. |.+   .+|++  +++|.+|+|+|..++        ..|      +++.|.|.+|+..+          ++.|
T Consensus        82 i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~~~g~~~~~~~~~~~~~~~~~G~i~vd~~~~----------T~~~  151 (198)
T d1nhpa1          82 IQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGVRPNTAWLKGTLELHPNGLIKTDEYMR----------TSEP  151 (198)
T ss_dssp             EETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCEEESCGGGTTTSCBCTTSCBCCCTTCB----------CSST
T ss_pred             EeeccccceeeecccccccccccceeeEeecceeecccccccccccccccceeccCCceecCCccc----------cccc
Confidence            986543 543   45543  679999999998754        222      24556677777665          5689


Q ss_pred             CeEEecCCCccC-----------chhHHHHHHHHHHHHHcCCCC
Q 013303          313 GLSFVGIPQKVI-----------PFPFFELQSKWIASVLSGRIV  345 (446)
Q Consensus       313 ~l~~iG~~~~~~-----------~~~~~~~qa~~~a~~l~g~~~  345 (446)
                      +||++|++....           ....+..||+.+|++|.+...
T Consensus       152 ~IyA~GD~a~~~~~~~~~~~~~~~a~~A~~~g~~aa~ni~~~~~  195 (198)
T d1nhpa1         152 DVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPVK  195 (198)
T ss_dssp             TEEECGGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSSSCCC
T ss_pred             ceEEecceeecccccCCCcccccHHHHHHHHHHHHHHhhCCCCC
Confidence            999999875321           234567899999999987643

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.32  E-value=1.9e-11  Score=96.74  Aligned_cols=98  Identities=26%  Similarity=0.399  Sum_probs=80.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      +++++|||||+.|+.+|..|++.|.+|+|+|+++++..                                          
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~------------------------------------------   60 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA------------------------------------------   60 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSS------------------------------------------
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccch------------------------------------------
Confidence            57999999999999999999999999999999875411                                          


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCC-ceEEEEEeCC-CceEEEEEcEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESN-KWKVKSRKKD-DVVEEETFDAVV  159 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~-~~~v~~~~~~-~~~~~~~~d~VV  159 (446)
                                      .+  ..++.+++++..++.|++  ++++++|++++..+++ ...++..++. ++.+++.+|.|+
T Consensus        61 ----------------~~--d~ei~~~l~~~l~~~GV~--i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vl  120 (122)
T d1v59a2          61 ----------------SM--DGEVAKATQKFLKKQGLD--FKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLL  120 (122)
T ss_dssp             ----------------SS--CHHHHHHHHHHHHHTTCE--EECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEE
T ss_pred             ----------------hh--hhhhHHHHHHHHHhccce--EEeCCEEEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEE
Confidence                            00  168999999999999998  9999999999987643 2345555554 456789999999


Q ss_pred             Ec
Q 013303          160 VC  161 (446)
Q Consensus       160 vA  161 (446)
                      +|
T Consensus       121 vA  122 (122)
T d1v59a2         121 VA  122 (122)
T ss_dssp             EC
T ss_pred             EC
Confidence            97

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.32  E-value=8e-13  Score=103.92  Aligned_cols=101  Identities=16%  Similarity=0.257  Sum_probs=74.7

Q ss_pred             cCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC-----ccc----c-ccCC
Q 013303          170 LAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-----DET----H-EKQP  239 (446)
Q Consensus       170 ~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~-----~~~----~-~~~~  239 (446)
                      +|+|||.+.    .+.+.++.....  +++|+|||+|.+|+|+|..|++.|.+||++.|++.     +..    + +.+.
T Consensus         1 ~P~IpG~e~----~~ts~~~~~l~~--p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~   74 (117)
T d1onfa2           1 FPPVKGIEN----TISSDEFFNIKE--SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMK   74 (117)
T ss_dssp             CCSCTTGGG----CEEHHHHTTCCC--CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHHH
T ss_pred             CcccCCHhH----cCchhHHhccCC--CCEEEEECCchHHHHHHHHHHhccccceeeehhccccccccHHHHHHHHHHHH
Confidence            488899864    456655544432  68999999999999999999999999999999875     111    1 1122


Q ss_pred             CC-CCeeeccceeEEcc--CCc--EEecCCcEEe-ecEEEEec
Q 013303          240 GY-DNMWLHSMVERANE--DGT--VVFRNGRVVS-ADVIMHCT  276 (446)
Q Consensus       240 ~~-~~v~~~~~v~~i~~--~~~--v~~~dG~~~~-~D~vi~at  276 (446)
                      +. -++..+..|++++.  ++.  +.++||++++ +|.||+|.
T Consensus        75 ~~gV~i~~~~~v~~i~~~~~~~~~v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          75 KNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             HTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECC
T ss_pred             hCCCEEEECCEEEEEEEcCCCeEEEEECCCCEEEeCCEEEEeC
Confidence            22 26777888999863  332  7789999885 79999984

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.32  E-value=3e-12  Score=100.53  Aligned_cols=95  Identities=22%  Similarity=0.277  Sum_probs=75.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      +++++|||||+.|+.+|..|++.|.+|+++|+.+++..                                          
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~------------------------------------------   58 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP------------------------------------------   58 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSST------------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeeeccccc------------------------------------------
Confidence            57999999999999999999999999999999875410                                          


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                      .+  ..++.+++.+..++.|++  ++++++|++++.   + -.+.. ...+...++.||.||+|
T Consensus        59 ----------------~~--d~~~~~~l~~~l~~~gV~--i~~~~~V~~i~~---~-~~~~~-~~~~~~~~i~~D~vi~A  113 (115)
T d1lvla2          59 ----------------TY--DSELTAPVAESLKKLGIA--LHLGHSVEGYEN---G-CLLAN-DGKGGQLRLEADRVLVA  113 (115)
T ss_dssp             ----------------TS--CHHHHHHHHHHHHHHTCE--EETTCEEEEEET---T-EEEEE-CSSSCCCEECCSCEEEC
T ss_pred             ----------------cc--cchhHHHHHHHHHhhcce--EEcCcEEEEEcC---C-eEEEE-EcCCCeEEEEcCEEEEe
Confidence                            00  157889999999999998  999999999862   2 23332 33333457999999999


Q ss_pred             cC
Q 013303          162 NG  163 (446)
Q Consensus       162 tG  163 (446)
                      +|
T Consensus       114 ~G  115 (115)
T d1lvla2         114 VG  115 (115)
T ss_dssp             CC
T ss_pred             cC
Confidence            98

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.32  E-value=1e-11  Score=99.86  Aligned_cols=97  Identities=23%  Similarity=0.287  Sum_probs=77.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++|+.+.+....                                        
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~----------------------------------------   74 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERV----------------------------------------   74 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTT----------------------------------------
T ss_pred             CCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccc----------------------------------------
Confidence            4789999999999999999999999999999976441100                                        


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCce--EEEEEeCCCceEEEEEcEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW--KVKSRKKDDVVEEETFDAVV  159 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~--~v~~~~~~~~~~~~~~d~VV  159 (446)
                                         ..+++.+++.+..++.|++  ++++++|+.++...++..  .+.+.++.    ++.+|.||
T Consensus        75 -------------------~~~~~~~~~~~~~~~~GV~--i~~~~~v~~i~~~~~~~~v~~v~~~~G~----~i~~D~vi  129 (133)
T d1q1ra2          75 -------------------TAPPVSAFYEHLHREAGVD--IRTGTQVCGFEMSTDQQKVTAVLCEDGT----RLPADLVI  129 (133)
T ss_dssp             -------------------SCHHHHHHHHHHHHHHTCE--EECSCCEEEEEECTTTCCEEEEEETTSC----EEECSEEE
T ss_pred             -------------------cchhhhhhhhhcccccccE--EEeCCeEEEEEEeCCCceEEEEECCCCC----EEECCEEE
Confidence                               0157888999999999998  999999999988653322  23344443    79999999


Q ss_pred             EccC
Q 013303          160 VCNG  163 (446)
Q Consensus       160 vAtG  163 (446)
                      +|+|
T Consensus       130 ~a~G  133 (133)
T d1q1ra2         130 AGIG  133 (133)
T ss_dssp             ECCC
T ss_pred             EeeC
Confidence            9998

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.32  E-value=7e-12  Score=98.71  Aligned_cols=96  Identities=19%  Similarity=0.265  Sum_probs=78.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHC---CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLRE---GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM   78 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~---g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~   78 (446)
                      +++|+|||||+.|+.+|..|.+.   |.+|+++|+.+.+.                                        
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il----------------------------------------   57 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL----------------------------------------   57 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS----------------------------------------
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceeccccccc----------------------------------------
Confidence            57999999999999999876654   78999999976441                                        


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEE
Q 013303           79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV  158 (446)
Q Consensus        79 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~V  158 (446)
                                        +.+  .+++.+++.+..++.|++  ++++++|++|+..+++...++.+++.    ++.||.|
T Consensus        58 ------------------~~~--d~~~~~~~~~~l~~~GI~--v~~~~~v~~i~~~~~g~~~v~~~~g~----~i~~D~V  111 (117)
T d1feca2          58 ------------------RGF--DSELRKQLTEQLRANGIN--VRTHENPAKVTKNADGTRHVVFESGA----EADYDVV  111 (117)
T ss_dssp             ------------------TTS--CHHHHHHHHHHHHHTTEE--EEETCCEEEEEECTTSCEEEEETTSC----EEEESEE
T ss_pred             ------------------ccc--cchhhHHHHHHHhhCcEE--EEcCCEEEEEEECCCCEEEEEECCCC----EEEcCEE
Confidence                              001  157889999999999998  99999999999876566667776664    7899999


Q ss_pred             EEccC
Q 013303          159 VVCNG  163 (446)
Q Consensus       159 VvAtG  163 (446)
                      |+|+|
T Consensus       112 i~a~G  116 (117)
T d1feca2         112 MLAIG  116 (117)
T ss_dssp             EECSC
T ss_pred             EEecC
Confidence            99999

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.31  E-value=2.7e-12  Score=117.51  Aligned_cols=62  Identities=21%  Similarity=0.250  Sum_probs=52.1

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCCCc
Q 013303          100 PGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPR  169 (446)
Q Consensus       100 ~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~p~  169 (446)
                      .....+...+.+.+++.|++  ++++++|.+++..+ ++|.|.+.++     ++.+|.||+|+|.++...
T Consensus       147 ~~p~~~~~~l~~~a~~~Gv~--i~~~~~V~~i~~~~-~~v~V~t~~g-----~i~a~~VViAaG~~s~~l  208 (281)
T d2gf3a1         147 LFSENCIRAYRELAEARGAK--VLTHTRVEDFDISP-DSVKIETANG-----SYTADKLIVSMGAWNSKL  208 (281)
T ss_dssp             EEHHHHHHHHHHHHHHTTCE--EECSCCEEEEEECS-SCEEEEETTE-----EEEEEEEEECCGGGHHHH
T ss_pred             cccccccccccccccccccc--ccCCcEEEEEEEEC-CEEEEEECCc-----EEEcCEEEECCCCcchhh
Confidence            34578889999999999988  99999999999887 7888887554     689999999999876543

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.30  E-value=3.1e-13  Score=120.67  Aligned_cols=48  Identities=17%  Similarity=0.133  Sum_probs=40.0

Q ss_pred             CCeeeeCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCCCC
Q 013303          288 NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGRIV  345 (446)
Q Consensus       288 ~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~~~  345 (446)
                      .|.|.+|++++          ++.|+||++|++... ...+.+..|++.+|+.+.|..+
T Consensus       187 ~G~I~vde~~~----------T~~~~iyAvGDv~~~~~l~~~A~~eg~~aa~~i~g~~~  235 (238)
T d1aoga1         187 NGGVQVDEYSR----------TNVSNIYAIGDVTNRVMLTPVAINEAAALVDTVFGTTP  235 (238)
T ss_dssp             TTEECCCTTCB----------CSSTTEEECGGGGTSCCCHHHHHHHHHHHHHHHHSSSC
T ss_pred             CCeEEecCCee----------eccCCEEEEEEecCCccchhhHHHHHHHHHHHHcCCCC
Confidence            36799999988          779999999998743 4557899999999999998654

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=2.5e-11  Score=96.55  Aligned_cols=99  Identities=14%  Similarity=0.136  Sum_probs=80.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      +++|+|||||+.|+.+|..|++.|.+|+++++++++-                                           
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l-------------------------------------------   58 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL-------------------------------------------   58 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC-------------------------------------------
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccc-------------------------------------------
Confidence            4799999999999999999999999999999976440                                           


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCC-C----ceEEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-D----VVEEETFD  156 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~-~----~~~~~~~d  156 (446)
                                     +.+  ..++.+++.+..++.|++  ++++++|++|+..+ +++.++..... +    ....+.+|
T Consensus        59 ---------------~~~--d~~~~~~~~~~l~~~Gv~--i~~~~~v~~i~~~~-~g~~v~~~~~~~g~~~~~~~~~~~D  118 (125)
T d3grsa2          59 ---------------RSF--DSMISTNCTEELENAGVE--VLKFSQVKEVKKTL-SGLEVSMVTAVPGRLPVMTMIPDVD  118 (125)
T ss_dssp             ---------------TTS--CHHHHHHHHHHHHHTTCE--EETTEEEEEEEEET-TEEEEEEEECCTTSCCEEEEEEEES
T ss_pred             ---------------cch--hhHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcC-CeEEEEEEEccCCcCcCccccccCC
Confidence                           000  157889999999999999  99999999999877 66776655432 2    23467899


Q ss_pred             EEEEccC
Q 013303          157 AVVVCNG  163 (446)
Q Consensus       157 ~VVvAtG  163 (446)
                      .|++|+|
T Consensus       119 ~vl~a~G  125 (125)
T d3grsa2         119 CLLWAIG  125 (125)
T ss_dssp             EEEECSC
T ss_pred             EEEEEeC
Confidence            9999998

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.30  E-value=2e-11  Score=96.74  Aligned_cols=100  Identities=15%  Similarity=0.123  Sum_probs=80.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+-.|..|++.|.+|+++++.+.+.                                           
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l-------------------------------------------   58 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK-------------------------------------------   58 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT-------------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhh-------------------------------------------
Confidence            4789999999999999999999999999999976431                                           


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                     +.+  .+++.+++.+..++.+++  ++++++|..++..+++.+........+..+++.+|.||+|
T Consensus        59 ---------------~~~--d~~~~~~~~~~l~~~gI~--v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a  119 (121)
T d1mo9a2          59 ---------------LIK--DNETRAYVLDRMKEQGME--IISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLG  119 (121)
T ss_dssp             ---------------TCC--SHHHHHHHHHHHHHTTCE--EESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEEC
T ss_pred             ---------------ccc--ccchhhhhhhhhhccccE--EEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEE
Confidence                           000  157889999999999998  9999999999987755544333333344568999999999


Q ss_pred             cC
Q 013303          162 NG  163 (446)
Q Consensus       162 tG  163 (446)
                      +|
T Consensus       120 ~G  121 (121)
T d1mo9a2         120 LG  121 (121)
T ss_dssp             CC
T ss_pred             EC
Confidence            98

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.30  E-value=1.2e-11  Score=97.04  Aligned_cols=95  Identities=18%  Similarity=0.405  Sum_probs=78.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+|+|+.+++.                                           
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il-------------------------------------------   58 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL-------------------------------------------   58 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC-------------------------------------------
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhcccc-------------------------------------------
Confidence            4789999999999999999999999999999976441                                           


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                     +.|  .+++.+++.+..++.|+.  ++++++|++++..+++..++++.++.   ....||.||+|
T Consensus        59 ---------------~~~--d~~~~~~~~~~l~~~gV~--i~~~~~v~~i~~~~~~~~~v~~~~G~---~~~~~D~Vi~A  116 (117)
T d1onfa2          59 ---------------RKF--DESVINVLENDMKKNNIN--IVTFADVVEIKKVSDKNLSIHLSDGR---IYEHFDHVIYC  116 (117)
T ss_dssp             ---------------TTS--CHHHHHHHHHHHHHTTCE--EECSCCEEEEEESSTTCEEEEETTSC---EEEEESEEEEC
T ss_pred             ---------------ccc--cHHHHHHHHHHHHhCCCE--EEECCEEEEEEEcCCCeEEEEECCCC---EEEeCCEEEEe
Confidence                           011  168899999999999998  99999999999877566777777654   22368999998

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=4e-13  Score=105.72  Aligned_cols=101  Identities=16%  Similarity=0.290  Sum_probs=72.8

Q ss_pred             CCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC-----ccc-----cccCCCC
Q 013303          172 QVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-----DET-----HEKQPGY  241 (446)
Q Consensus       172 ~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~-----~~~-----~~~~~~~  241 (446)
                      +|||.+.    .+++.+..+... .+++|+|||+|++|+|+|..|++.|.+||++.|++.     +..     .+.+.+.
T Consensus         1 diPG~e~----~~t~~~~~~l~~-~p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~~d~~~~~~~~~~l~~~   75 (116)
T d1gesa2           1 DIPGVEY----GIDSDGFFALPA-LPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAE   75 (116)
T ss_dssp             CSTTGGG----SBCHHHHHHCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHH
T ss_pred             CcCCccc----cCCHHHHhChhh-CCCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhhcchhhHHHHHHHHHHC
Confidence            4677653    233433333222 358999999999999999999999999999999875     111     1111122


Q ss_pred             -CCeeeccceeEEccCC----cEEecCCcEEeecEEEEecC
Q 013303          242 -DNMWLHSMVERANEDG----TVVFRNGRVVSADVIMHCTG  277 (446)
Q Consensus       242 -~~v~~~~~v~~i~~~~----~v~~~dG~~~~~D~vi~atG  277 (446)
                       -++..+..|+++..++    .+.++||+++++|.||+|||
T Consensus        76 GV~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          76 GPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             SCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             CCEEEeCCEEEEEEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence             2667788888887543    27789999999999999998

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.29  E-value=1.4e-13  Score=109.57  Aligned_cols=106  Identities=22%  Similarity=0.256  Sum_probs=75.9

Q ss_pred             CCccCCCCCCCCCCccEEEeeecCCCCC-----CCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc----cc---
Q 013303          167 VPRLAQVPGIDSWPGKQMHSHNYRIPNP-----FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD----ET---  234 (446)
Q Consensus       167 ~p~~p~i~G~~~~~g~~~hs~~~~~~~~-----~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~----~~---  234 (446)
                      +|+.|+|||.+.    ++++..+.+.+.     ..+++|+|||||++|+|+|..|++.|.+|+++++++..    ..   
T Consensus         1 R~r~p~ipG~e~----~~t~~~~~d~~~l~~~~~~~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~~d~~~~~   76 (122)
T d1xhca2           1 RAREPQIKGKEY----LLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLGLDEELSN   76 (122)
T ss_dssp             EECCCCSBTGGG----EECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTTCCHHHHH
T ss_pred             CCCCcCCCCccc----eEccCCHHHHHHHHHHhhcCCcEEEECCcHHHHHHHHHhhcccceEEEEeccccccCCCHHHHH
Confidence            478899999753    333333222111     13589999999999999999999999999999998751    11   


Q ss_pred             -c-ccCCCCC-CeeeccceeEEccCCcEEecCCcEEeecEEEEecCc
Q 013303          235 -H-EKQPGYD-NMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGY  278 (446)
Q Consensus       235 -~-~~~~~~~-~v~~~~~v~~i~~~~~v~~~dG~~~~~D~vi~atG~  278 (446)
                       + +.+.+.+ ++..+..+.++..++  .+.|++++++|.||+|||.
T Consensus        77 ~~~~~l~~~GV~~~~~~~v~~~~~~~--v~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          77 MIKDMLEETGVKFFLNSELLEANEEG--VLTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             HHHHHHHHTTEEEECSCCEEEECSSE--EEETTEEEECSCEEEECCE
T ss_pred             HHHHHHHHCCcEEEeCCEEEEEeCCE--EEeCCCEEECCEEEEEEEe
Confidence             1 1112222 566678899997654  4678899999999999994

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.28  E-value=6.9e-12  Score=99.08  Aligned_cols=92  Identities=20%  Similarity=0.259  Sum_probs=74.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++|+.+++...                                         
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~-----------------------------------------   68 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR-----------------------------------------   68 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT-----------------------------------------
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccc-----------------------------------------
Confidence            478999999999999999999999999999997643100                                         


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                      .  -.+++.+++.+..++.|++  ++++++|+++..   +  .+++.++.    ++.+|.||+|
T Consensus        69 ----------------~--~~~~~~~~~~~~l~~~GV~--i~~~~~v~~~~~---~--~v~l~dg~----~i~~D~vi~a  119 (121)
T d1d7ya2          69 ----------------A--APATLADFVARYHAAQGVD--LRFERSVTGSVD---G--VVLLDDGT----RIAADMVVVG  119 (121)
T ss_dssp             ----------------T--SCHHHHHHHHHHHHTTTCE--EEESCCEEEEET---T--EEEETTSC----EEECSEEEEC
T ss_pred             ----------------c--CCHHHHHHHHHHHHHCCcE--EEeCCEEEEEeC---C--EEEECCCC----EEECCEEEEe
Confidence                            0  0157889999999999998  999999988763   2  35555554    7999999999


Q ss_pred             cC
Q 013303          162 NG  163 (446)
Q Consensus       162 tG  163 (446)
                      +|
T Consensus       120 ~G  121 (121)
T d1d7ya2         120 IG  121 (121)
T ss_dssp             SC
T ss_pred             eC
Confidence            98

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=4.7e-13  Score=106.71  Aligned_cols=106  Identities=17%  Similarity=0.218  Sum_probs=82.7

Q ss_pred             CCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc----cccccC---CCCCC-
Q 013303          172 QVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD----ETHEKQ---PGYDN-  243 (446)
Q Consensus       172 ~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~----~~~~~~---~~~~~-  243 (446)
                      ++||.+.|.|+.+|.+..+++..|+||+|+|||+|.||+|.|..|++.+++||+++|++..    ....++   ....+ 
T Consensus         2 ~ipge~~~~gkgV~yca~cD~~~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~~~~~~~~~~~~~~~~~~i   81 (126)
T d1trba2           2 GLPSEEAFKGRGVSACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNI   81 (126)
T ss_dssp             CCHHHHHTBTTTEESCHHHHGGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCCCHHHHHHHHHHHHTSSE
T ss_pred             cCCCHHHhcCCCEEEEEecchHHhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecccccchhHHHHHHHHhhcccce
Confidence            5788888999999988888888899999999999999999999999999999999998751    111111   12233 


Q ss_pred             -eeeccceeEEccCCc----EEecCC------cEEeecEEEEecC
Q 013303          244 -MWLHSMVERANEDGT----VVFRNG------RVVSADVIMHCTG  277 (446)
Q Consensus       244 -v~~~~~v~~i~~~~~----v~~~dG------~~~~~D~vi~atG  277 (446)
                       +..+..+.++.+++.    |++.|.      +++++|.|+++.|
T Consensus        82 ~~~~~~~v~~i~G~~~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG  126 (126)
T d1trba2          82 ILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIG  126 (126)
T ss_dssp             EEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred             eEecceEEEEEECCCCceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence             444667888887643    666653      3488999999987

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=99.26  E-value=7.9e-12  Score=113.05  Aligned_cols=146  Identities=16%  Similarity=0.122  Sum_probs=79.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCcee----eeCCCCC--CCCCCCCCCCCCccCCccCceeecCCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW----IYTSETE--SDPLGVDPNRYPVHSSLYKSLRVNLPR   75 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w----~~~~~~~--~~~~g~~p~~~~~~~~~y~~l~~~~~~   75 (446)
                      .++|+||||||+||++|..|++.|++|+||||++.++..+    ...+...  .+..|..           ..... .+.
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~-----------~~~~~-~~~   71 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVE-----------LDSIS-VPS   71 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCC-----------GGGTC-BCC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcc-----------hhhhc-cCC
Confidence            5799999999999999999999999999999976543222    1110000  0000100           00000 000


Q ss_pred             CCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEE
Q 013303           76 ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETF  155 (446)
Q Consensus        76 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~  155 (446)
                      ..+.+.+++...... .......+.....+..  .......+..  ++++++|+.+.... +.++|+++++.    ++++
T Consensus        72 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~v~~~~~~~-~~v~v~~~dG~----~~~~  141 (265)
T d2voua1          72 SSMEYVDALTGERVG-SVPADWRFTSYDSIYG--GLYELFGPER--YHTSKCLVGLSQDS-ETVQMRFSDGT----KAEA  141 (265)
T ss_dssp             CEEEEEETTTCCEEE-EEECCCCEEEHHHHHH--HHHHHHCSTT--EETTCCEEEEEECS-SCEEEEETTSC----EEEE
T ss_pred             CcceeEeccCCceec-ccccccccchhHHHHH--HHHHhcccce--eecCcEEEEEEeeC-CceEEEECCCC----EEEE
Confidence            001111111000000 0000011111122221  2222223344  89999999999877 77999887765    7899


Q ss_pred             cEEEEccCCCCCCc
Q 013303          156 DAVVVCNGHFSVPR  169 (446)
Q Consensus       156 d~VVvAtG~~s~p~  169 (446)
                      |.||.|.|.++..+
T Consensus       142 d~~v~adG~~s~~r  155 (265)
T d2voua1         142 NWVIGADGGASVVR  155 (265)
T ss_dssp             SEEEECCCTTCHHH
T ss_pred             EEEecccccccccc
Confidence            99999999766544

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.26  E-value=9.5e-12  Score=114.81  Aligned_cols=40  Identities=38%  Similarity=0.625  Sum_probs=37.4

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceee
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI   42 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~   42 (446)
                      +||+|||||++||+||..|++.|++|+|||+++.+||...
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~   40 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVG   40 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCceEE
Confidence            4899999999999999999999999999999999999543

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.25  E-value=3.7e-11  Score=95.20  Aligned_cols=98  Identities=24%  Similarity=0.291  Sum_probs=81.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      +++++|||||+.|+.+|..|.+.|.+|+++|+++.+.                                           
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l-------------------------------------------   61 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV-------------------------------------------   61 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS-------------------------------------------
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccC-------------------------------------------
Confidence            5789999999999999999999999999999976441                                           


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCC-CceEEEEEcEEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD-DVVEEETFDAVVV  160 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~-~~~~~~~~d~VVv  160 (446)
                        |.             +  ..++.+++.+..++.|++  +++|++|.+|+..+ ++.+|++.... ++..++.+|.|++
T Consensus        62 --~~-------------~--d~~~~~~l~~~l~~~GI~--i~~~~~v~~i~~~~-~~~~v~~~~~~~g~~~~i~~D~vLv  121 (123)
T d1dxla2          62 --PT-------------M--DAEIRKQFQRSLEKQGMK--FKLKTKVVGVDTSG-DGVKLTVEPSAGGEQTIIEADVVLV  121 (123)
T ss_dssp             --TT-------------S--CHHHHHHHHHHHHHSSCC--EECSEEEEEEECSS-SSEEEEEEESSSCCCEEEEESEEEC
T ss_pred             --ch-------------h--hhcchhhhhhhhhcccce--EEcCCceEEEEEcc-CeEEEEEEECCCCeEEEEEcCEEEE
Confidence              00             0  158899999999999998  99999999999876 66777776543 3556799999999


Q ss_pred             cc
Q 013303          161 CN  162 (446)
Q Consensus       161 At  162 (446)
                      |.
T Consensus       122 AA  123 (123)
T d1dxla2         122 SA  123 (123)
T ss_dssp             CC
T ss_pred             cC
Confidence            83

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=8.3e-12  Score=106.62  Aligned_cols=113  Identities=16%  Similarity=0.183  Sum_probs=75.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .+||+||||||+|++||..+++.|.+|+|||++  +||.+.....                              ...+.
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar~G~~v~iie~~--~gg~~~~~~~------------------------------~~~~~   48 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGGQILDTVD------------------------------IENYI   48 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSS--TTGGGGGCCE------------------------------ECCBT
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe--cCCccccccc------------------------------ceecc
Confidence            379999999999999999999999999999974  6777664310                              00011


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                      .++.              .....+...+...+++++.+  ......+..+.+.....+.........  .++.++.++++
T Consensus        49 ~~~~--------------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  110 (184)
T d1fl2a1          49 SVPK--------------TEGQKLAGALKVHVDEYDVD--VIDSQSASKLIPAAVEGGLHQIETASG--AVLKARSIIVA  110 (184)
T ss_dssp             TBSS--------------EEHHHHHHHHHHHHHTSCEE--EECSCCEEEEECCSSTTCCEEEEETTS--CEEEEEEEEEC
T ss_pred             ccch--------------hhhHHHHHHHHHHhhheece--eeccceeeeecccccccceeeeeeecc--eeeeccccccc
Confidence            1111              23467777788888887765  556667777765543322222222221  37889999999


Q ss_pred             cCC
Q 013303          162 NGH  164 (446)
Q Consensus       162 tG~  164 (446)
                      +|.
T Consensus       111 ~g~  113 (184)
T d1fl2a1         111 TGA  113 (184)
T ss_dssp             CCE
T ss_pred             ccc
Confidence            995

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.4e-11  Score=98.34  Aligned_cols=96  Identities=22%  Similarity=0.266  Sum_probs=78.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHH----CCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLR----EGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPREL   77 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~----~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~   77 (446)
                      .++++|||||+.|+.+|..|++    .|.+|+++++++.+..                                      
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~--------------------------------------   78 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMG--------------------------------------   78 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTT--------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCc--------------------------------------
Confidence            4689999999999999988864    5899999999764310                                      


Q ss_pred             cccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcE
Q 013303           78 MGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA  157 (446)
Q Consensus        78 ~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~  157 (446)
                                         ..|+  +++.+++.+..++.|++  +++++.|.+++..+ +...|+++++.    ++.+|.
T Consensus        79 -------------------~~~~--~~~~~~~~~~l~~~GV~--~~~~~~V~~i~~~~-~~~~v~l~~G~----~i~aD~  130 (137)
T d1m6ia2          79 -------------------KILP--EYLSNWTMEKVRREGVK--VMPNAIVQSVGVSS-GKLLIKLKDGR----KVETDH  130 (137)
T ss_dssp             -------------------TTSC--HHHHHHHHHHHHTTTCE--EECSCCEEEEEEET-TEEEEEETTSC----EEEESE
T ss_pred             -------------------ccCC--HHHHHHHHHHHHhCCcE--EEeCCEEEEEEecC-CEEEEEECCCC----EEECCE
Confidence                               0111  57888999999999998  99999999999876 67778877764    899999


Q ss_pred             EEEccC
Q 013303          158 VVVCNG  163 (446)
Q Consensus       158 VVvAtG  163 (446)
                      ||+|+|
T Consensus       131 Vi~A~G  136 (137)
T d1m6ia2         131 IVAAVG  136 (137)
T ss_dssp             EEECCC
T ss_pred             EEEeec
Confidence            999999

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=1.7e-11  Score=105.34  Aligned_cols=110  Identities=19%  Similarity=0.319  Sum_probs=80.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .+||+||||||+||.||..|++.|++|+|||+.. .||.+.......                                 
T Consensus         5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~-~~g~~~~~~~i~---------------------------------   50 (190)
T d1trba1           5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGME-KGGQLTTTTEVE---------------------------------   50 (190)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS-TTGGGGGCSBCC---------------------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec-ccccccccchhh---------------------------------
Confidence            4689999999999999999999999999999864 455554321100                                 


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                      .++          ..+......++.+.+...+.++++.  +.+ .+|+.+.... +.+.++....     .+.++.+|+|
T Consensus        51 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~V~~~~~~~-~~~~v~~~~~-----~~~~~~viva  111 (190)
T d1trba1          51 NWP----------GDPNDLTGPLLMERMHEHATKFETE--IIF-DHINKVDLQN-RPFRLNGDNG-----EYTCDALIIA  111 (190)
T ss_dssp             CST----------TCCSSCBHHHHHHHHHHHHHHTTCE--EEC-CCEEEEECSS-SSEEEEESSC-----EEEEEEEEEC
T ss_pred             hhh----------ccccccchHHHHHHHHHHHHhcCcE--Eec-ceeEEEecCC-CcEEEEEeee-----eEeeeeeeee
Confidence            000          0122345678888889899999876  544 5788888765 6677765442     6899999999


Q ss_pred             cCC
Q 013303          162 NGH  164 (446)
Q Consensus       162 tG~  164 (446)
                      +|.
T Consensus       112 ~G~  114 (190)
T d1trba1         112 TGA  114 (190)
T ss_dssp             CCE
T ss_pred             cce
Confidence            994

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.22  E-value=1.9e-11  Score=114.55  Aligned_cols=40  Identities=43%  Similarity=0.638  Sum_probs=37.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCcee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSW   41 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w   41 (446)
                      .++|+|||||++||+||..|++.|++|+|||+++.+||..
T Consensus        30 pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG~~   69 (370)
T d2iida1          30 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRV   69 (370)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCee
Confidence            5799999999999999999999999999999999999954

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.22  E-value=1.1e-10  Score=92.23  Aligned_cols=99  Identities=18%  Similarity=0.281  Sum_probs=78.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      +++++|||||+.|+..|..|++.|.+|+|+++.. +    .                                       
T Consensus        20 P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~-~----l---------------------------------------   55 (122)
T d1h6va2          20 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSI-L----L---------------------------------------   55 (122)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-S----S---------------------------------------
T ss_pred             CCeEEEECCCccHHHHHHHHhhcCCeEEEEEech-h----h---------------------------------------
Confidence            4789999999999999999999999999998742 2    0                                       


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCC---CceEEEEEeCCC-ceEEEEEcE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVES---NKWKVKSRKKDD-VVEEETFDA  157 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~---~~~~v~~~~~~~-~~~~~~~d~  157 (446)
                                     +.|  .+++.+++.+..++.|++  ++++++|++++...+   +...++...+.+ +.....||.
T Consensus        56 ---------------~~~--D~~~~~~l~~~l~~~Gv~--i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~  116 (122)
T d1h6va2          56 ---------------RGF--DQDMANKIGEHMEEHGIK--FIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNT  116 (122)
T ss_dssp             ---------------TTS--CHHHHHHHHHHHHHTTEE--EEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESE
T ss_pred             ---------------ccC--CHHHHHHHHHHHHHCCCE--EEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCE
Confidence                           000  168899999999999998  999999999976542   345666665543 445678999


Q ss_pred             EEEccC
Q 013303          158 VVVCNG  163 (446)
Q Consensus       158 VVvAtG  163 (446)
                      |++|+|
T Consensus       117 vl~AiG  122 (122)
T d1h6va2         117 VLLAVG  122 (122)
T ss_dssp             EECCCC
T ss_pred             EEEEeC
Confidence            999998

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.22  E-value=7.1e-12  Score=115.29  Aligned_cols=159  Identities=18%  Similarity=0.210  Sum_probs=86.7

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcC-------ceeeeCCCCCCCCCCCCCCCCCccCCccCceeecC
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVG-------GSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNL   73 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~G-------G~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~   73 (446)
                      |+++|+||||||+||++|..|++.|++|+|||+.+..+       +.+......-.+..|..... ......+.......
T Consensus         1 mk~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~l-~~~~~~~~~~~~~~   79 (292)
T d1k0ia1           1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRM-ARDGLVHEGVEIAF   79 (292)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHH-HHHCEEESCEEEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcCchHHH-HhhcccccceEEEe
Confidence            67899999999999999999999999999999976432       11110000000000000000 00000000000000


Q ss_pred             CCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEE
Q 013303           74 PRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEE  153 (446)
Q Consensus        74 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~  153 (446)
                      ....... ++....     ........+...+.+.|.+.++..+..  +.++..+..+...+++...|+...+ ++..++
T Consensus        80 ~~~~~~~-~~~~~~-----~~~~~~~~~~~~l~~~L~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~-g~~~~i  150 (292)
T d1k0ia1          80 AGQRRRI-DLKRLS-----GGKTVTVYGQTEVTRDLMEAREACGAT--TVYQAAEVRLHDLQGERPYVTFERD-GERLRL  150 (292)
T ss_dssp             TTEEEEE-CHHHHH-----TSCCEEECCHHHHHHHHHHHHHHTTCE--EESSCEEEEEECTTSSSCEEEEEET-TEEEEE
T ss_pred             ccccccc-cccccc-----ccccceeecHHHHHHHHHHHHHhCCCc--EEEcceeeeeeeeccCceEEEEecC-CcEEEE
Confidence            0000000 000000     001223346678888999988888765  6777666655544436677777654 344578


Q ss_pred             EEcEEEEccCCCCCCc
Q 013303          154 TFDAVVVCNGHFSVPR  169 (446)
Q Consensus       154 ~~d~VVvAtG~~s~p~  169 (446)
                      .||+||.|.|.+|.-+
T Consensus       151 ~a~~vVgADG~~S~vR  166 (292)
T d1k0ia1         151 DCDYIAGCDGFHGISR  166 (292)
T ss_dssp             ECSEEEECCCTTCSTG
T ss_pred             EeCEEEECCCCCCccc
Confidence            9999999999766544

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.20  E-value=5.7e-12  Score=100.05  Aligned_cols=106  Identities=12%  Similarity=0.167  Sum_probs=74.8

Q ss_pred             CccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC-----ccc----c-cc
Q 013303          168 PRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-----DET----H-EK  237 (446)
Q Consensus       168 p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~-----~~~----~-~~  237 (446)
                      |++|.+|+.+    +++.+.+...... .+++++|||+|.+|+|+|..+++.|.+|+++.+++.     +..    + +.
T Consensus         2 ~~lP~ip~~~----~i~ts~~~l~l~~-~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~~d~~~~~~l~~~   76 (125)
T d1ojta2           2 TKLPFIPEDP----RIIDSSGALALKE-VPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQ   76 (125)
T ss_dssp             CCCSSCCCCT----TEECHHHHTTCCC-CCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHH
T ss_pred             CCCCCCCCCC----cEEcHHHhhCccc-cCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccccchhhHHHHHHHH
Confidence            5666666532    4666666555443 468999999999999999999999999999999875     111    1 12


Q ss_pred             CCCCC-CeeeccceeEEccCCc---EEecC--C--cEEeecEEEEecCc
Q 013303          238 QPGYD-NMWLHSMVERANEDGT---VVFRN--G--RVVSADVIMHCTGY  278 (446)
Q Consensus       238 ~~~~~-~v~~~~~v~~i~~~~~---v~~~d--G--~~~~~D~vi~atG~  278 (446)
                      +.+.+ ++..+..+.+++.+..   +.+.+  |  +++++|.|++|+|+
T Consensus        77 l~~~gv~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~GR  125 (125)
T d1ojta2          77 NEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGR  125 (125)
T ss_dssp             HGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCE
T ss_pred             HHHcCcccccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecCC
Confidence            22222 5667778888864332   55543  3  36899999999995

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.17  E-value=7.5e-11  Score=93.37  Aligned_cols=93  Identities=22%  Similarity=0.209  Sum_probs=73.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||||+.|+.+|..|++.|.+|+++|+.+++-+.                                         
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~-----------------------------------------   68 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV-----------------------------------------   68 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT-----------------------------------------
T ss_pred             CCEEEEECChHHHHHHHHHhhccceEEEEEEecCccccc-----------------------------------------
Confidence            468999999999999999999999999999997643100                                         


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEc
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVC  161 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvA  161 (446)
                                      .+  .+++.+++.++.+..|++  ++++++|++++.++ ....+ ..++.    ++.+|.||+|
T Consensus        69 ----------------~~--d~~~~~~~~~~l~~~gv~--~~~~~~v~~i~~~~-~~~~v-~~dg~----~i~~D~vi~a  122 (123)
T d1nhpa2          69 ----------------YL--DKEFTDVLTEEMEANNIT--IATGETVERYEGDG-RVQKV-VTDKN----AYDADLVVVA  122 (123)
T ss_dssp             ----------------TC--CHHHHHHHHHHHHTTTEE--EEESCCEEEEECSS-BCCEE-EESSC----EEECSEEEEC
T ss_pred             ----------------cc--chhhHHHHHHHhhcCCeE--EEeCceEEEEEcCC-CEEEE-EeCCC----EEECCEEEEE
Confidence                            00  157889999999999998  99999999998643 22333 44443    7999999998

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.17  E-value=1.4e-10  Score=91.01  Aligned_cols=94  Identities=16%  Similarity=0.188  Sum_probs=77.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHC---CCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLRE---GHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM   78 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~---g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~   78 (446)
                      +++|+|||||+.|+.+|..|.+.   |.+|+++|+.+++-                                        
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL----------------------------------------   59 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL----------------------------------------   59 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS----------------------------------------
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh----------------------------------------
Confidence            47999999999999999877765   45799999976440                                        


Q ss_pred             ccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEE
Q 013303           79 GFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAV  158 (446)
Q Consensus        79 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~V  158 (446)
                                        +.|  .+++.+++.+..++.|++  ++++++|++++...++..+|+++++.    ++.||.|
T Consensus        60 ------------------~~~--d~~~~~~l~~~l~~~GV~--v~~~~~v~~ie~~~~~~~~v~~~~G~----~i~~D~V  113 (117)
T d1aoga2          60 ------------------RGF--DHTLREELTKQLTANGIQ--ILTKENPAKVELNADGSKSVTFESGK----KMDFDLV  113 (117)
T ss_dssp             ------------------TTS--CHHHHHHHHHHHHHTTCE--EEESCCEEEEEECTTSCEEEEETTSC----EEEESEE
T ss_pred             ------------------ccc--chHHHHHHHHHHHhcCcE--EEcCCEEEEEEEcCCCeEEEEECCCc----EEEeCEE
Confidence                              011  168889999999999999  99999999999876567888887764    7899999


Q ss_pred             EEc
Q 013303          159 VVC  161 (446)
Q Consensus       159 VvA  161 (446)
                      |+|
T Consensus       114 i~A  116 (117)
T d1aoga2         114 MMA  116 (117)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            998

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.16  E-value=2.4e-10  Score=105.73  Aligned_cols=162  Identities=17%  Similarity=0.151  Sum_probs=89.0

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCC-------CCCCCCCC-----CccCCcc----
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDP-------LGVDPNRY-----PVHSSLY----   66 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~-------~g~~p~~~-----~~~~~~y----   66 (446)
                      +||+|||||++||++|..|++.|.+|+|+||.+..||.-......-...       .+..-+..     ......+    
T Consensus        17 ~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~s~~s~G~~~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~d~   96 (308)
T d1y0pa2          17 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDP   96 (308)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcceecCCCCccccchhhhhhhccchHHHHHHHHHhhhhhccch
Confidence            6999999999999999999999999999999987776432211000000       00000000     0000000    


Q ss_pred             ---CceeecCCCC--CcccCCCCCCcCCCC--CC-----CCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEc
Q 013303           67 ---KSLRVNLPRE--LMGFQAYPFVARNYE--GS-----VDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV  134 (446)
Q Consensus        67 ---~~l~~~~~~~--~~~~~d~~~~~~~~~--~~-----~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~  134 (446)
                         ..+..+.+..  .+.-...+|......  ..     ...........+...+.+.+.+.++.  ++++++|+.+..+
T Consensus        97 ~lv~~~~~~~~~~i~~L~~~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~--i~~~~~v~~li~~  174 (308)
T d1y0pa2          97 ALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNID--LRMNTRGIEVLKD  174 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCE--EESSEEEEEEEEC
T ss_pred             HHHHHHHHhhhHHHHHHHHcCCCccccccccccccccccccccccchHHHHHHHHHHHHHhccce--EEEeeccchhhhh
Confidence               0000000000  000000111100000  00     00011112356777888888888988  9999999998776


Q ss_pred             CCCce-EEEEEeCCCceEEEEEcEEEEccCCCC
Q 013303          135 ESNKW-KVKSRKKDDVVEEETFDAVVVCNGHFS  166 (446)
Q Consensus       135 ~~~~~-~v~~~~~~~~~~~~~~d~VVvAtG~~s  166 (446)
                      +++.. -|.+.+..+....+.++.||+|||.|+
T Consensus       175 ~~G~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~  207 (308)
T d1y0pa2         175 DKGTVKGILVKGMYKGYYWVKADAVILATGGFA  207 (308)
T ss_dssp             TTSCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred             cccccccccccccccceeEeecCeEEEccCccc
Confidence            64443 356666555567899999999999655

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.16  E-value=1.8e-12  Score=115.15  Aligned_cols=42  Identities=29%  Similarity=0.441  Sum_probs=38.4

Q ss_pred             CeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCCCcCceeeeC
Q 013303            3 RHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIYT   44 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG~w~~~   44 (446)
                      .+|+|||||||||+||..|++.  |++|+|||+.+.+||.+.+.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~~   45 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFG   45 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHT
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehhh
Confidence            5899999999999999999876  67999999999999998863

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.14  E-value=6e-11  Score=93.89  Aligned_cols=88  Identities=24%  Similarity=0.305  Sum_probs=71.6

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQA   82 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d   82 (446)
                      ++|+|||||+.|+.+|..|++.|.+|+++|+.+.+.+                                           
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~-------------------------------------------   69 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG-------------------------------------------   69 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT-------------------------------------------
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEeccccccC-------------------------------------------
Confidence            6899999999999999999999999999999764311                                           


Q ss_pred             CCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEcc
Q 013303           83 YPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCN  162 (446)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAt  162 (446)
                        +                .+++.+++.+..++.|++  ++++++|.+++.+    . + +.++    .++.+|.||+|+
T Consensus        70 --~----------------d~~~~~~~~~~l~~~GV~--~~~~~~v~~~~~~----~-v-~~~~----~~i~~D~vi~a~  119 (122)
T d1xhca2          70 --L----------------DEELSNMIKDMLEETGVK--FFLNSELLEANEE----G-V-LTNS----GFIEGKVKICAI  119 (122)
T ss_dssp             --C----------------CHHHHHHHHHHHHHTTEE--EECSCCEEEECSS----E-E-EETT----EEEECSCEEEEC
T ss_pred             --C----------------CHHHHHHHHHHHHHCCcE--EEeCCEEEEEeCC----E-E-EeCC----CEEECCEEEEEE
Confidence              0                157888999999999988  9999999988632    2 2 2232    378999999999


Q ss_pred             C
Q 013303          163 G  163 (446)
Q Consensus       163 G  163 (446)
                      |
T Consensus       120 G  120 (122)
T d1xhca2         120 G  120 (122)
T ss_dssp             C
T ss_pred             E
Confidence            9

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.14  E-value=4.6e-10  Score=101.98  Aligned_cols=156  Identities=16%  Similarity=0.065  Sum_probs=84.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCCCcCceeeeC---CCCC--CCCCCCCCCCCCc-cCCccCceeecCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQVGGSWIYT---SETE--SDPLGVDPNRYPV-HSSLYKSLRVNLP   74 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~~~GG~w~~~---~~~~--~~~~g~~p~~~~~-~~~~y~~l~~~~~   74 (446)
                      +.||+|||||||||++|..|++.|+ +|+|||+.+.++..+.-.   +..-  .+..++..  .+. .+..........+
T Consensus         1 ~~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~   78 (288)
T d3c96a1           1 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGP--ALAATAIPTHELRYIDQ   78 (288)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHH--HHHHHSEEECEEEEECT
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEECHHHHHHHHHcCchh--hhHhhhcccccceeEcC
Confidence            3699999999999999999999996 899999988765322110   0000  00000000  000 0000001111111


Q ss_pred             C--CCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHH--HhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCce
Q 013303           75 R--ELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAR--EFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVV  150 (446)
Q Consensus        75 ~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~--~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~  150 (446)
                      .  ....+........     ...............+.....  ..+..  +.++++|+.+...+ +..+|++.++.++.
T Consensus        79 ~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~-~~v~v~~~~g~~~~  150 (288)
T d3c96a1          79 SGATVWSEPRGVEAGN-----AYPQYSIHRGELQMILLAAVRERLGQQA--VRTGLGVERIEERD-GRVLIGARDGHGKP  150 (288)
T ss_dssp             TSCEEEEEECGGGGTC-----SSCEEEEEHHHHHHHHHHHHHHHHCTTS--EEESEEEEEEEEET-TEEEEEEEETTSCE
T ss_pred             CCCEEEeccccccccc-----cCcccccchhhhHHHHHHHHHHhccCee--eecCcEEEEeeecC-CcEEEEEEcCCCCe
Confidence            1  0000100000000     000111122222333222222  23444  89999999998876 77889999987777


Q ss_pred             EEEEEcEEEEccCCCCC
Q 013303          151 EEETFDAVVVCNGHFSV  167 (446)
Q Consensus       151 ~~~~~d~VVvAtG~~s~  167 (446)
                      .++.+|.||.|.|.+|.
T Consensus       151 ~~~~ad~vi~ADG~~S~  167 (288)
T d3c96a1         151 QALGADVLVGADGIHSA  167 (288)
T ss_dssp             EEEEESEEEECCCTTCH
T ss_pred             EEEeeceeeccCCccce
Confidence            88999999999997654

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.13  E-value=2e-10  Score=107.11  Aligned_cols=163  Identities=23%  Similarity=0.214  Sum_probs=90.6

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCC-------CCCCCCCC------------CccC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDP-------LGVDPNRY------------PVHS   63 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~-------~g~~p~~~------------~~~~   63 (446)
                      .||+|||||++||+||..|++.|++|+|+||.+..||.-......-...       .+..-+..            +...
T Consensus        24 ~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~s~~s~Ggi~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~d~  103 (322)
T d1d4ca2          24 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNINDP  103 (322)
T ss_dssp             CSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred             ceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCCcccccCchhhhhcccCCCHHHHHHHHHhccccccCH
Confidence            6999999999999999999999999999999988776433221100000       00000000            0000


Q ss_pred             CccCceeecCCCC--CcccCCCCCCcCCCCC-------CCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEc
Q 013303           64 SLYKSLRVNLPRE--LMGFQAYPFVARNYEG-------SVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV  134 (446)
Q Consensus        64 ~~y~~l~~~~~~~--~~~~~d~~~~~~~~~~-------~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~  134 (446)
                      .....+..+.+..  .+.-...+|.......       ......-.....+.+.|...+.+.++.  |+++++|+.+..+
T Consensus       104 ~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~--i~~~t~v~~li~d  181 (322)
T d1d4ca2         104 ELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTD--IRLNSRVVRILED  181 (322)
T ss_dssp             HHHHHHHHTHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCSHHHHHHHHHHHHHHTTCE--EETTEEEEEEECC
T ss_pred             HHhhhhhhhhhhhhhhhhhhcccccccccccccccccccccccccchhHHHHHHHHHHHHhcCce--EEEeeeccccccc
Confidence            0000000000000  0000011111100000       000111224578888999999999988  9999999998876


Q ss_pred             CCCce-EEEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303          135 ESNKW-KVKSRKKDDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus       135 ~~~~~-~v~~~~~~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      +++.- -|...+..+....+.++.||+|||.++.
T Consensus       182 ~~G~V~Gv~~~~~~~~~~~i~Ak~VIlAtGG~~~  215 (322)
T d1d4ca2         182 ASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAK  215 (322)
T ss_dssp             SSSCCCEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred             ccccccceEEEeecccEEEEeCCeEEEcCCCccc
Confidence            53432 2455554455567999999999996553

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.13  E-value=3.8e-11  Score=103.30  Aligned_cols=112  Identities=17%  Similarity=0.193  Sum_probs=78.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc----CceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV----GGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPREL   77 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~----GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~   77 (446)
                      .+||+||||||+|++||..|++.|++++|+|+....    |+.....                       ....+     
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~-----------------------~~~~~-----   56 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTT-----------------------TDVEN-----   56 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGC-----------------------SEECC-----
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccc-----------------------hhhhc-----
Confidence            479999999999999999999999999999976532    1111110                       00000     


Q ss_pred             cccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcE
Q 013303           78 MGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDA  157 (446)
Q Consensus        78 ~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~  157 (446)
                        +..             .+......++...+.+.++++++.  +.+ .+|..++... ..+.+.+..     .+..+|.
T Consensus        57 --~~~-------------~~~~~~~~el~~~~~~q~~~~g~~--i~~-~~V~~~~~~~-~~~~v~~~~-----~~~~~~~  112 (192)
T d1vdca1          57 --FPG-------------FPEGILGVELTDKFRKQSERFGTT--IFT-ETVTKVDFSS-KPFKLFTDS-----KAILADA  112 (192)
T ss_dssp             --STT-------------CTTCEEHHHHHHHHHHHHHHTTCE--EEC-CCCCEEECSS-SSEEEECSS-----EEEEEEE
T ss_pred             --ccc-------------ccccccchHHHHHHHHHHHhhcce--eee-eeEEeccccc-CcEEecccc-----eeeeeee
Confidence              001             122345688999999999999987  654 4788888665 556665443     3688999


Q ss_pred             EEEccCCC
Q 013303          158 VVVCNGHF  165 (446)
Q Consensus       158 VVvAtG~~  165 (446)
                      +++|+|..
T Consensus       113 ~~~a~g~~  120 (192)
T d1vdca1         113 VILAIGAV  120 (192)
T ss_dssp             EEECCCEE
T ss_pred             EEEEeeee
Confidence            99999953

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.13  E-value=1.5e-11  Score=97.94  Aligned_cols=105  Identities=15%  Similarity=0.178  Sum_probs=79.9

Q ss_pred             CCCCCCC----CCccEEEeeecCCC--CCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC----ccccccCCCC
Q 013303          172 QVPGIDS----WPGKQMHSHNYRIP--NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DETHEKQPGY  241 (446)
Q Consensus       172 ~i~G~~~----~~g~~~hs~~~~~~--~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~----~~~~~~~~~~  241 (446)
                      .+||..+    |.|+.+|.+..++.  +.|+||+|+|||+|.||+|.|..|++.+++||+++|++.    +...+++.+.
T Consensus         3 ~~pGe~E~~~~f~gkGVsyca~CDg~a~~frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra~~~~~~~l~~~   82 (130)
T d1vdca2           3 SFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQQRALSN   82 (130)
T ss_dssp             CCBTCSSSSSCCBTTTEESCHHHHTTSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHHHHTC
T ss_pred             CCCccccccccccCCcEEEEEEecCchHHhCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEeccccccchhhhhccccC
Confidence            4677554    88899998888875  479999999999999999999999999999999999875    2233444445


Q ss_pred             CC--eeeccceeEEccCCc------EEec---CC--cEEeecEEEEec
Q 013303          242 DN--MWLHSMVERANEDGT------VVFR---NG--RVVSADVIMHCT  276 (446)
Q Consensus       242 ~~--v~~~~~v~~i~~~~~------v~~~---dG--~~~~~D~vi~at  276 (446)
                      ++  +..++.+.++.+++.      +.+.   +|  +++++|.|+++.
T Consensus        83 ~nI~v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVaI  130 (130)
T d1vdca2          83 PKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAI  130 (130)
T ss_dssp             TTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECS
T ss_pred             CceEEEeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEEC
Confidence            54  455678888876542      4443   34  458899998864

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=99.13  E-value=7e-11  Score=107.84  Aligned_cols=138  Identities=17%  Similarity=0.133  Sum_probs=81.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHH-CCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCc-c
Q 013303            2 FRHVAVIGAGAAGLVVGHELLR-EGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELM-G   79 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~-~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~-~   79 (446)
                      .+||+||||||+||+||..|++ .|++|+|||+++.+||.|.+.        |+.          |+..........+ .
T Consensus        33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~~--------g~~----------~~~~~~~~~~~~~~~   94 (278)
T d1rp0a1          33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLG--------GQL----------FSAMIVRKPAHLFLD   94 (278)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCC--------STT----------CCCEEEETTTHHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceeec--------CEE----------cCHHHHhhhHHHHHH
Confidence            4699999999999999999987 599999999999999988763        221          1111111111000 0


Q ss_pred             cCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceE-EEEEe------C----CC
Q 013303           80 FQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK-VKSRK------K----DD  148 (446)
Q Consensus        80 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~-v~~~~------~----~~  148 (446)
                      -...++...    ............+..++..++...+..  +..++.+..+.... +... +....      .    ..
T Consensus        95 ~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~v~gv~~~~~~~~~~~~~~~~~  167 (278)
T d1rp0a1          95 EIGVAYDEQ----DTYVVVKHAALFTSTIMSKLLARPNVK--LFNAVAAEDLIVKG-NRVGGVVTNWALVAQNHHTQSCM  167 (278)
T ss_dssp             HHTCCCEEC----SSEEEESCHHHHHHHHHHHHHTSTTEE--EEETEEEEEEEEET-TEEEEEEEEEHHHHTCTTTSSCC
T ss_pred             HcCCceecC----CccceecccHHHHHHHHHHHHHhCCCE--EEeCCcceeeeecC-CeEEEEEeccceeeeeecccccc
Confidence            001111111    000122334456666677666655554  77888888776654 2221 11110      0    01


Q ss_pred             ceEEEEEcEEEEccCC
Q 013303          149 VVEEETFDAVVVCNGH  164 (446)
Q Consensus       149 ~~~~~~~d~VVvAtG~  164 (446)
                      ...++.++.||+|+|+
T Consensus       168 ~~~~~~a~~vv~a~G~  183 (278)
T d1rp0a1         168 DPNVMEAKIVVSSCGH  183 (278)
T ss_dssp             CCEEEEEEEEEECCCS
T ss_pred             cceeeccceEEECcCC
Confidence            2357899999999996

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.13  E-value=2.7e-11  Score=95.27  Aligned_cols=83  Identities=20%  Similarity=0.266  Sum_probs=63.6

Q ss_pred             CCCEEEEEecCCcHHHHHHHHhc---cCCEEEEEEecCC-----cc----cc-ccCCCCC-CeeeccceeEEccCC--c-
Q 013303          196 QDQVVILIGHYASGLDIKRDLAG---FAKEVHIASRSVA-----DE----TH-EKQPGYD-NMWLHSMVERANEDG--T-  258 (446)
Q Consensus       196 ~~k~VvVVG~G~sg~eia~~l~~---~~~~V~l~~r~~~-----~~----~~-~~~~~~~-~v~~~~~v~~i~~~~--~-  258 (446)
                      .+++++|||+|++|+|+|..+++   .+.+|+++.+++.     +.    .+ +.+.+.+ ++..+..|+++..+.  . 
T Consensus        17 ~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g~~   96 (117)
T d1feca2          17 APKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTR   96 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCE
T ss_pred             cCCeEEEECCChHHHHHHHHhHhhcccccccceecccccccccccchhhHHHHHHHhhCcEEEEcCCEEEEEEECCCCEE
Confidence            46899999999999999987665   4889999999875     11    11 1122222 677788999997432  2 


Q ss_pred             -EEecCCcEEeecEEEEecCc
Q 013303          259 -VVFRNGRVVSADVIMHCTGY  278 (446)
Q Consensus       259 -v~~~dG~~~~~D~vi~atG~  278 (446)
                       +.++||+++++|.||+|||+
T Consensus        97 ~v~~~~g~~i~~D~Vi~a~GR  117 (117)
T d1feca2          97 HVVFESGAEADYDVVMLAIGR  117 (117)
T ss_dssp             EEEETTSCEEEESEEEECSCE
T ss_pred             EEEECCCCEEEcCEEEEecCC
Confidence             88999999999999999995

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.11  E-value=6.3e-11  Score=93.23  Aligned_cols=95  Identities=17%  Similarity=0.131  Sum_probs=71.1

Q ss_pred             cEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC-----ccc----c-ccCCCCC-Ceeeccce
Q 013303          182 KQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-----DET----H-EKQPGYD-NMWLHSMV  250 (446)
Q Consensus       182 ~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~-----~~~----~-~~~~~~~-~v~~~~~v  250 (446)
                      .+++|.+....+. .+++++|||+|.+|+|+|..+++.|++|+++.+++.     +..    + +.+.+.+ .+..+..+
T Consensus         8 ~v~~s~~~l~l~~-~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~~d~ei~~~l~~~l~~~Gv~i~~~~~v   86 (119)
T d3lada2           8 VIVDSTGALDFQN-VPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARV   86 (119)
T ss_dssp             SEEEHHHHTSCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCEE
T ss_pred             EEEchhHhhCccc-CCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCcccchhHHHHHHHHHhcCceeecCcEE
Confidence            5677776655443 568999999999999999999999999999999875     111    1 1222333 67778889


Q ss_pred             eEEccCCc---EEecCC---cEEeecEEEEecC
Q 013303          251 ERANEDGT---VVFRNG---RVVSADVIMHCTG  277 (446)
Q Consensus       251 ~~i~~~~~---v~~~dG---~~~~~D~vi~atG  277 (446)
                      ++++.++.   +++.++   +++++|.||+|+|
T Consensus        87 ~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          87 TGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             EEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred             EEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence            99875543   666655   4688999999998

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.10  E-value=4.5e-10  Score=104.39  Aligned_cols=162  Identities=20%  Similarity=0.246  Sum_probs=90.6

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCC---C----CCCCCCCCC------------CccC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETES---D----PLGVDPNRY------------PVHS   63 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~---~----~~g~~p~~~------------~~~~   63 (446)
                      .||+|||||++||+||.+|++.|.+|+|+||.+..||.-......-.   .    ..+...+..            ....
T Consensus        20 ~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG~S~~a~Ggi~a~~~~~~~~~g~~d~~~~~~~d~~~~~~~~~d~   99 (317)
T d1qo8a2          20 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDI   99 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCCCcccccchhhhhcccCCcHHHHHHHHHHhhccccch
Confidence            68999999999999999999999999999999877654222110000   0    000000000            0000


Q ss_pred             CccCceeecCCCCC--cccCCCCCCcCCCCCC--CC-----CCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEc
Q 013303           64 SLYKSLRVNLPREL--MGFQAYPFVARNYEGS--VD-----LRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLV  134 (446)
Q Consensus        64 ~~y~~l~~~~~~~~--~~~~d~~~~~~~~~~~--~~-----~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~  134 (446)
                      .+.+.+..+.+..+  +.-...+|........  ..     ......+..+...|...+++.++.  ++++++|+.+...
T Consensus       100 ~lv~~~~~~a~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~g~~~g~~i~~~L~~~~~~~g~~--i~~~~~v~~l~~~  177 (317)
T d1qo8a2         100 KLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGID--TRLNSRVVKLVVN  177 (317)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCC--EECSEEEEEEEEC
T ss_pred             hHHHHHHhhhhhhhhhHHHhhhcccccccccCcccccccccccccccchhhhHHHHHHhhhccce--eeeccchhheeec
Confidence            00000000000000  0000111111000000  00     011124567889999999999998  9999999998776


Q ss_pred             CCCceE-EEEEeCCCceEEEEEcEEEEccCCCC
Q 013303          135 ESNKWK-VKSRKKDDVVEEETFDAVVVCNGHFS  166 (446)
Q Consensus       135 ~~~~~~-v~~~~~~~~~~~~~~d~VVvAtG~~s  166 (446)
                      +++.-. |...+.++....+.++.||+|||.|+
T Consensus       178 ~~g~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~  210 (317)
T d1qo8a2         178 DDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYG  210 (317)
T ss_dssp             TTSBEEEEEEEETTTEEEEEEEEEEEECCCCCT
T ss_pred             ccccceeeEeecccceEEEEeccceEEeccccc
Confidence            534332 55556555666789999999999654

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=2.8e-11  Score=101.12  Aligned_cols=55  Identities=22%  Similarity=0.228  Sum_probs=46.9

Q ss_pred             CccCCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEE
Q 013303          168 PRLAQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVH  224 (446)
Q Consensus       168 p~~p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~  224 (446)
                      |+.|+|||.+.  ..++|+.++.......||+|+|||||.+|+|+|..+++.|.+++
T Consensus         2 Pr~p~IpG~d~--~~V~~a~d~L~~~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~~   56 (162)
T d1ps9a2           2 PRTPPIDGIDH--PKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTS   56 (162)
T ss_dssp             ECCCCCBTTTS--TTEEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGG
T ss_pred             CCCCCCCCCCC--CCeEEHHHHhhCccccCCceEEEcCchhHHHHHHHHHHcCCccc
Confidence            78999999875  45788778776666789999999999999999999999887543

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=99.08  E-value=1.9e-10  Score=100.10  Aligned_cols=39  Identities=23%  Similarity=0.279  Sum_probs=34.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeC-CCcCce
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG-EQVGGS   40 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~-~~~GG~   40 (446)
                      .+||+|||||+||+.||.+++|.|.+++||+++ +.+|+.
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~   41 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMP   41 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhccc
Confidence            589999999999999999999999999999986 334433

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.08  E-value=1.7e-10  Score=106.62  Aligned_cols=61  Identities=20%  Similarity=0.225  Sum_probs=48.4

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCc-eEEEEEeCCCceEEEEEcEEEEccCCCCC
Q 013303           99 YPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNK-WKVKSRKKDDVVEEETFDAVVVCNGHFSV  167 (446)
Q Consensus        99 ~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~-~~v~~~~~~~~~~~~~~d~VVvAtG~~s~  167 (446)
                      ......+...+.+.+++.|+.  +.++++|+++...+ ++ +.|.+.++     +++||.||+|+|.++.
T Consensus       144 ~~~p~~l~~~l~~~a~~~gv~--i~~~~~V~~i~~~~-~~v~~V~T~~g-----~i~a~~VV~aaG~~s~  205 (305)
T d1pj5a2         144 LASAARAVQLLIKRTESAGVT--YRGSTTVTGIEQSG-GRVTGVQTADG-----VIPADIVVSCAGFWGA  205 (305)
T ss_dssp             EECHHHHHHHHHHHHHHTTCE--EECSCCEEEEEEET-TEEEEEEETTE-----EEECSEEEECCGGGHH
T ss_pred             ccchhhhhhhHHhhhhccccc--ccCCceEEEEEEeC-CEEEEEeccce-----eEECCEEEEecchhHH
Confidence            345678888888889999998  99999999999887 54 34555332     6999999999998654

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=2.3e-10  Score=107.70  Aligned_cols=39  Identities=36%  Similarity=0.584  Sum_probs=37.2

Q ss_pred             eEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceee
Q 013303            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI   42 (446)
Q Consensus         4 ~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~   42 (446)
                      ||+|||||++||+||..|++.|++|+|||+++.+||.+.
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr~~   39 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTY   39 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBTTCC
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcceee
Confidence            799999999999999999999999999999999999654

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.05  E-value=6e-11  Score=95.28  Aligned_cols=82  Identities=16%  Similarity=0.171  Sum_probs=64.0

Q ss_pred             CCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc------c----ccccC-CCC-CCeeeccceeEEccCC------
Q 013303          196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD------E----THEKQ-PGY-DNMWLHSMVERANEDG------  257 (446)
Q Consensus       196 ~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~------~----~~~~~-~~~-~~v~~~~~v~~i~~~~------  257 (446)
                      .+++|+|||+|++|+|+|..|++.|.+|+++.+.+..      +    .+.+. .+. -++..+..|++++...      
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~  113 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVT  113 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEE
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccccchhhhhhhhhcccccccEEEeCCeEEEEEEeCCCceEE
Confidence            4699999999999999999999999999999998751      0    11111 111 2567778888886432      


Q ss_pred             cEEecCCcEEeecEEEEecC
Q 013303          258 TVVFRNGRVVSADVIMHCTG  277 (446)
Q Consensus       258 ~v~~~dG~~~~~D~vi~atG  277 (446)
                      .+.++||+++++|.||+|+|
T Consensus       114 ~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2         114 AVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             EEEETTSCEEECSEEEECCC
T ss_pred             EEECCCCCEEECCEEEEeeC
Confidence            27789999999999999998

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.02  E-value=6.9e-11  Score=98.01  Aligned_cols=123  Identities=13%  Similarity=0.050  Sum_probs=86.8

Q ss_pred             ccCCCCCCccC-CCCCCCCCCccEEEeeecCCCCCCCCCEEEEE--ecCCcHHHHHHHHhccCCEEEEEEecCCc-----
Q 013303          161 CNGHFSVPRLA-QVPGIDSWPGKQMHSHNYRIPNPFQDQVVILI--GHYASGLDIKRDLAGFAKEVHIASRSVAD-----  232 (446)
Q Consensus       161 AtG~~s~p~~p-~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVV--G~G~sg~eia~~l~~~~~~V~l~~r~~~~-----  232 (446)
                      |||  +.|..| ++||++.-...++.+.+........++.|+|+  |+|.+|+|+|..|++.|++||++.+.+..     
T Consensus         4 atG--~~~~~~~pipG~~~~~~~v~t~~d~l~~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~~~   81 (156)
T d1djqa2           4 TDG--TNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHF   81 (156)
T ss_dssp             SSC--CCTTTSSCCTTCCTTSTTEECHHHHHHTCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHHHH
T ss_pred             CCC--CCCCCCCCCCCccCCCCEEECHHHHhcCccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccccc
Confidence            799  888887 79998753335666666655555567888887  99999999999999999999999997641     


Q ss_pred             -----cccccCCCC-CCeeeccceeEEccCCcEEecCCcEEeecEEEEecCccCCCCCCC
Q 013303          233 -----ETHEKQPGY-DNMWLHSMVERANEDGTVVFRNGRVVSADVIMHCTGYKYNYPFLE  286 (446)
Q Consensus       233 -----~~~~~~~~~-~~v~~~~~v~~i~~~~~v~~~dG~~~~~D~vi~atG~~~~~~~l~  286 (446)
                           ...+.+.+. ..+..+..+.++..++ +.+.+....+.+.++.++|..|+....+
T Consensus        82 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~-v~l~~~~~~~~~~v~~~~g~~~~~~~~~  140 (156)
T d1djqa2          82 TLEYPNMMRRLHELHVEELGDHFCSRIEPGR-MEIYNIWGDGSKRTYRGPGVSPRDANTS  140 (156)
T ss_dssp             TTCHHHHHHHHHHTTCEEEETEEEEEEETTE-EEEEETTCSCSCCCCCCTTSCSSCCCCC
T ss_pred             hhHHHHHHHHHhhccceEEeccEEEEecCcc-eEEEeeeccccceeeeeeEEEecccCCc
Confidence                 111222222 2667778888887654 6666655555666666666666655543

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.02  E-value=3.8e-11  Score=95.06  Aligned_cols=84  Identities=15%  Similarity=0.164  Sum_probs=62.1

Q ss_pred             CCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC-----cc----cc-ccCCCC-CCeeeccceeEEccCC--c--
Q 013303          194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-----DE----TH-EKQPGY-DNMWLHSMVERANEDG--T--  258 (446)
Q Consensus       194 ~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~-----~~----~~-~~~~~~-~~v~~~~~v~~i~~~~--~--  258 (446)
                      ..++++|+|||+|++|+|+|..|++.+.+|+++.+++.     +.    .+ +.+.+. -++..+..+.+++.++  .  
T Consensus        19 ~~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~~~d~~~~~~~~~~l~~~gI~v~~~~~v~~i~~~~~~~~~   98 (121)
T d1mo9a2          19 YEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQ   98 (121)
T ss_dssp             SCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEE
T ss_pred             hCCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhcccccchhhhhhhhhhccccEEEcCCEEEEEEecCCceEE
Confidence            44689999999999999999999999999999999875     10    11 111122 2677778888887543  2  


Q ss_pred             -EE---ecCCcEEeecEEEEecC
Q 013303          259 -VV---FRNGRVVSADVIMHCTG  277 (446)
Q Consensus       259 -v~---~~dG~~~~~D~vi~atG  277 (446)
                       +.   ..+++++++|.||+|+|
T Consensus        99 ~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          99 AVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             EEEEEETTEEEEEECSCEEECCC
T ss_pred             EEEEEeCCCCEEEEcCEEEEEEC
Confidence             11   23456799999999998

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.02  E-value=5.9e-11  Score=92.90  Aligned_cols=96  Identities=17%  Similarity=0.184  Sum_probs=67.6

Q ss_pred             ccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC-----cc----cc-ccCCCC-CCeeeccc
Q 013303          181 GKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-----DE----TH-EKQPGY-DNMWLHSM  249 (446)
Q Consensus       181 g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~-----~~----~~-~~~~~~-~~v~~~~~  249 (446)
                      ++++.|.+...... .+++++|||+|+.|+|+|..|++.|++||++.+.+.     +.    .+ +.+.+. -++.....
T Consensus         6 ~~~~~s~~~l~~~~-~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~   84 (115)
T d1lvla2           6 GPVISSTEALAPKA-LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHS   84 (115)
T ss_dssp             TTEECHHHHTCCSS-CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEETTCE
T ss_pred             CcEECChHHhCccc-CCCeEEEECCCHHHHHHHHHHhhcccceEEEeeeccccccccchhHHHHHHHHHhhcceEEcCcE
Confidence            45666666554443 468999999999999999999999999999999875     10    11 111122 25666778


Q ss_pred             eeEEccCCcEEe-cC--CcEEeecEEEEecC
Q 013303          250 VERANEDGTVVF-RN--GRVVSADVIMHCTG  277 (446)
Q Consensus       250 v~~i~~~~~v~~-~d--G~~~~~D~vi~atG  277 (446)
                      |+++..+..+.. .+  ++++++|.||+|||
T Consensus        85 V~~i~~~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          85 VEGYENGCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             EEEEETTEEEEECSSSCCCEECCSCEEECCC
T ss_pred             EEEEcCCeEEEEEcCCCeEEEEcCEEEEecC
Confidence            999865432222 22  25689999999998

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.01  E-value=2.6e-10  Score=90.13  Aligned_cols=81  Identities=21%  Similarity=0.261  Sum_probs=64.5

Q ss_pred             CCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC------cc----cc-ccCCCCC-CeeeccceeEEccCCc--EEe
Q 013303          196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA------DE----TH-EKQPGYD-NMWLHSMVERANEDGT--VVF  261 (446)
Q Consensus       196 ~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~------~~----~~-~~~~~~~-~v~~~~~v~~i~~~~~--v~~  261 (446)
                      .+|+|+|||+|++|+|+|..|++.|.+||++.+.+.      +.    .+ +.+.+.+ ++..+..++++.+++.  ..+
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~  108 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVV  108 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECSSBCCEEE
T ss_pred             CCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccccchhhHHHHHHHhhcCCeEEEeCceEEEEEcCCCEEEEE
Confidence            578999999999999999999999999999999864      11    11 1112223 6778889999987654  568


Q ss_pred             cCCcEEeecEEEEec
Q 013303          262 RNGRVVSADVIMHCT  276 (446)
Q Consensus       262 ~dG~~~~~D~vi~at  276 (446)
                      .||+++++|.||+|.
T Consensus       109 ~dg~~i~~D~vi~aI  123 (123)
T d1nhpa2         109 TDKNAYDADLVVVAV  123 (123)
T ss_dssp             ESSCEEECSEEEECS
T ss_pred             eCCCEEECCEEEEEC
Confidence            999999999999984

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.6e-10  Score=93.40  Aligned_cols=82  Identities=20%  Similarity=0.236  Sum_probs=64.0

Q ss_pred             CCEEEEEecCCcHHHHHHHHhc----cCCEEEEEEecCC------cccc-----ccCCCCC-CeeeccceeEEccCC---
Q 013303          197 DQVVILIGHYASGLDIKRDLAG----FAKEVHIASRSVA------DETH-----EKQPGYD-NMWLHSMVERANEDG---  257 (446)
Q Consensus       197 ~k~VvVVG~G~sg~eia~~l~~----~~~~V~l~~r~~~------~~~~-----~~~~~~~-~v~~~~~v~~i~~~~---  257 (446)
                      +++++|||+|.+|+|+|..|++    .+.+|+++.+.+.      +..+     +.+.+.+ ++..+..|++++.++   
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~~~GV~~~~~~~V~~i~~~~~~~  116 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKL  116 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEECSCCEEEEEEETTEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHHHhCCcEEEeCCEEEEEEecCCEE
Confidence            6899999999999999999964    5889999998764      1111     1122232 677788999997654   


Q ss_pred             cEEecCCcEEeecEEEEecCc
Q 013303          258 TVVFRNGRVVSADVIMHCTGY  278 (446)
Q Consensus       258 ~v~~~dG~~~~~D~vi~atG~  278 (446)
                      .++++||+++++|.||+|||.
T Consensus       117 ~v~l~~G~~i~aD~Vi~A~Gv  137 (137)
T d1m6ia2         117 LIKLKDGRKVETDHIVAAVGL  137 (137)
T ss_dssp             EEEETTSCEEEESEEEECCCE
T ss_pred             EEEECCCCEEECCEEEEeecC
Confidence            288999999999999999993

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.99  E-value=1.5e-10  Score=90.79  Aligned_cols=100  Identities=15%  Similarity=0.230  Sum_probs=70.4

Q ss_pred             CCCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC-----cccc-----ccCCC
Q 013303          171 AQVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-----DETH-----EKQPG  240 (446)
Q Consensus       171 p~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~-----~~~~-----~~~~~  240 (446)
                      |.+|+.+    +++.+.+...... .+++|+|||+|++|+|+|..+++.|.+||++.|++.     +..+     +.+.+
T Consensus         1 P~~~~~~----~i~~s~~~l~~~~-~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~~d~~~~~~l~~~l~~   75 (117)
T d1ebda2           1 PNFKFSN----RILDSTGALNLGE-VPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKK   75 (117)
T ss_dssp             TTBCCCS----SEECHHHHHTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHH
T ss_pred             CcCCCCC----CEEChhHhhChhh-cCCeEEEECCCccceeeeeeecccccEEEEEEecceecccccchhHHHHHHHHHh
Confidence            4555543    4677766555543 468999999999999999999999999999999886     1111     11222


Q ss_pred             C-CCeeeccceeEEccCCc---EEe-cCC--cEEeecEEEEe
Q 013303          241 Y-DNMWLHSMVERANEDGT---VVF-RNG--RVVSADVIMHC  275 (446)
Q Consensus       241 ~-~~v~~~~~v~~i~~~~~---v~~-~dG--~~~~~D~vi~a  275 (446)
                      . -++..+..|++++.++.   +.+ .+|  +++++|.||+.
T Consensus        76 ~GI~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          76 KGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             TTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEEC
T ss_pred             cCCEEEcCCEEEEEEEcCCEEEEEEEeCCCEEEEEeEEEEEC
Confidence            2 37778889999975432   444 345  45899999873

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.97  E-value=1.7e-10  Score=90.45  Aligned_cols=81  Identities=15%  Similarity=0.257  Sum_probs=60.5

Q ss_pred             CCCEEEEEecCCcHHHHHHHHhcc---CCEEEEEEecCC-----cccc-----ccCCCC-CCeeeccceeEEccC--Cc-
Q 013303          196 QDQVVILIGHYASGLDIKRDLAGF---AKEVHIASRSVA-----DETH-----EKQPGY-DNMWLHSMVERANED--GT-  258 (446)
Q Consensus       196 ~~k~VvVVG~G~sg~eia~~l~~~---~~~V~l~~r~~~-----~~~~-----~~~~~~-~~v~~~~~v~~i~~~--~~-  258 (446)
                      .+++++|||+|++|+|+|..+...   +.+||++.+++.     +..+     +.+.+. -++..+..+++++.+  +. 
T Consensus        19 ~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~~d~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~~~~   98 (117)
T d1aoga2          19 PPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGSK   98 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCE
T ss_pred             cCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcccchHHHHHHHHHHHhcCcEEEcCCEEEEEEEcCCCeE
Confidence            468999999999999999877655   457999999875     1111     111222 267778899999643  22 


Q ss_pred             -EEecCCcEEeecEEEEec
Q 013303          259 -VVFRNGRVVSADVIMHCT  276 (446)
Q Consensus       259 -v~~~dG~~~~~D~vi~at  276 (446)
                       +.++||+++++|.||+|.
T Consensus        99 ~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          99 SVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             EEEETTSCEEEESEEEECS
T ss_pred             EEEECCCcEEEeCEEEEeC
Confidence             889999999999999984

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.5e-10  Score=91.96  Aligned_cols=101  Identities=16%  Similarity=0.229  Sum_probs=68.1

Q ss_pred             CCCCCCCCCccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC-----ccc----c-ccCCCC
Q 013303          172 QVPGIDSWPGKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-----DET----H-EKQPGY  241 (446)
Q Consensus       172 ~i~G~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~-----~~~----~-~~~~~~  241 (446)
                      .|||.+.    .+.|.+....+. .+|+|+|||+|++|+|+|..|++.|.+||++.|++.     +..    + +.+.+.
T Consensus         2 ~IPG~e~----~~ts~~~~~l~~-~pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~   76 (125)
T d3grsa2           2 QIPGASL----GITSDGFFQLEE-LPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENA   76 (125)
T ss_dssp             TSTTGGG----SBCHHHHTTCCS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHT
T ss_pred             CCCCccc----cCCHHHHhChhh-cCCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccccchhhHHHHHHHHHHHHC
Confidence            4677653    244555444333 358999999999999999999999999999999875     111    1 111222


Q ss_pred             C-CeeeccceeEEccCCc---EE---ecCCc------EEeecEEEEecC
Q 013303          242 D-NMWLHSMVERANEDGT---VV---FRNGR------VVSADVIMHCTG  277 (446)
Q Consensus       242 ~-~v~~~~~v~~i~~~~~---v~---~~dG~------~~~~D~vi~atG  277 (446)
                      + ++..+..++++..++.   +.   ..+|.      .+++|.||+|||
T Consensus        77 Gv~i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          77 GVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             TCEEETTEEEEEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             CCEEEeCCEEEEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence            2 6777788888864332   22   23342      367999999998

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.92  E-value=5.1e-10  Score=88.29  Aligned_cols=93  Identities=15%  Similarity=0.162  Sum_probs=65.8

Q ss_pred             cEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC-----ccc----c-ccCCCCC-Ceeeccce
Q 013303          182 KQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA-----DET----H-EKQPGYD-NMWLHSMV  250 (446)
Q Consensus       182 ~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~-----~~~----~-~~~~~~~-~v~~~~~v  250 (446)
                      .++.|.+...... .+|+++|||+|++|+|+|..|++.|.+||++.+++.     +..    + +.+.+.+ +++.+..|
T Consensus         9 ~v~ts~~~~~l~~-~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~GV~i~~~~~v   87 (122)
T d1v59a2           9 KIVSSTGALSLKE-IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKV   87 (122)
T ss_dssp             SEECHHHHTTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEE
T ss_pred             EEEehHHhhCccc-CCCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchhhhhhhHHHHHHHHHhccceEEeCCEE
Confidence            4666665554443 458999999999999999999999999999999875     111    1 1122233 67778888


Q ss_pred             eEEccC--Cc---EEecCC-----cEEeecEEEEe
Q 013303          251 ERANED--GT---VVFRNG-----RVVSADVIMHC  275 (446)
Q Consensus       251 ~~i~~~--~~---v~~~dG-----~~~~~D~vi~a  275 (446)
                      ++++.+  +.   +.+.++     +++++|.|++|
T Consensus        88 ~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          88 ISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             EEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             EEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            888643  21   445554     35899999986

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.91  E-value=9.2e-10  Score=94.84  Aligned_cols=113  Identities=22%  Similarity=0.318  Sum_probs=71.6

Q ss_pred             CeEEEECcChHHHHHHHHHHHCC--CcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCccc
Q 013303            3 RHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGF   80 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g--~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~   80 (446)
                      ++|+|||||++|+.+|..|++.+  .+|+++|+.+.+.  +...                   .    +......     
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~--~~~~-------------------~----~~~~l~~-----   50 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFIS--FLSA-------------------G----MQLYLEG-----   50 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSS--BCGG-------------------G----HHHHHTT-----
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCccc--cccc-------------------C----cchhhcc-----
Confidence            47999999999999999999874  5899999976441  0000                   0    0000000     


Q ss_pred             CCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEEE
Q 013303           81 QAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVV  159 (446)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~VV  159 (446)
                                       .....+++..+..+..++.|++  ++++++|.+|+...   -.|++.+. .++..++.||.||
T Consensus        51 -----------------~~~~~~~~~~~~~~~l~~~gi~--v~~~~~V~~i~~~~---~~v~~~~~~~g~~~~~~~D~li  108 (198)
T d1nhpa1          51 -----------------KVKDVNSVRYMTGEKMESRGVN--VFSNTEITAIQPKE---HQVTVKDLVSGEERVENYDKLI  108 (198)
T ss_dssp             -----------------SSCCGGGSBSCCHHHHHHTTCE--EEETEEEEEEETTT---TEEEEEETTTCCEEEEECSEEE
T ss_pred             -----------------cccchHHHHHhhHHHHHHCCcE--EEEeeceeeEeecc---ccceeeecccccccccccceee
Confidence                             0000011111223345566887  89999999998754   34665553 3566788999999


Q ss_pred             EccCCCCCCc
Q 013303          160 VCNGHFSVPR  169 (446)
Q Consensus       160 vAtG~~s~p~  169 (446)
                      +|+|  +.|.
T Consensus       109 ~a~G--~~~~  116 (198)
T d1nhpa1         109 ISPG--AVPF  116 (198)
T ss_dssp             ECCC--EEEC
T ss_pred             Eeec--ceee
Confidence            9999  5554

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.89  E-value=5.6e-10  Score=88.22  Aligned_cols=94  Identities=16%  Similarity=0.206  Sum_probs=66.6

Q ss_pred             cEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc-----c-----ccccCCCCC-Ceeeccce
Q 013303          182 KQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD-----E-----THEKQPGYD-NMWLHSMV  250 (446)
Q Consensus       182 ~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~-----~-----~~~~~~~~~-~v~~~~~v  250 (446)
                      .++.|.+...... .+++++|||+|.+|+|+|..+++.|.+||++.|++..     .     ..+.+.+.+ +++.+..+
T Consensus        11 ~v~ts~~~l~l~~-~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~v   89 (123)
T d1dxla2          11 KIVSSTGALALSE-IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKV   89 (123)
T ss_dssp             SEECHHHHTTCSS-CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEECSEEE
T ss_pred             eEEeHHHhhCccc-cCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCchhhhcchhhhhhhhhcccceEEcCCce
Confidence            4566665554443 4689999999999999999999999999999998751     1     112222333 78888899


Q ss_pred             eEEccCCc---EEec---CC--cEEeecEEEEec
Q 013303          251 ERANEDGT---VVFR---NG--RVVSADVIMHCT  276 (446)
Q Consensus       251 ~~i~~~~~---v~~~---dG--~~~~~D~vi~at  276 (446)
                      .+++.++.   +.+.   +|  +++++|.|++|.
T Consensus        90 ~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          90 VGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             EEEECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             EEEEEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence            99975432   3332   33  348899999873

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=2.5e-09  Score=91.36  Aligned_cols=123  Identities=14%  Similarity=0.195  Sum_probs=76.1

Q ss_pred             CCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCcc------ccccCCC--------------------CCCeeeccc
Q 013303          196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADE------THEKQPG--------------------YDNMWLHSM  249 (446)
Q Consensus       196 ~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~~------~~~~~~~--------------------~~~v~~~~~  249 (446)
                      ++++|+|||||++|++.|..+++.+.+|+++.+.....      .+.....                    .........
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDH   83 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcEEecce
Confidence            45789999999999999999999999999998765410      0111000                    011111224


Q ss_pred             eeEEccCCc--EEecCCcEEeecEEEEecCccCC-----CCCCC-----CCCeeeeCCCCcccccccccCCCCCCCeEEe
Q 013303          250 VERANEDGT--VVFRNGRVVSADVIMHCTGYKYN-----YPFLE-----TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFV  317 (446)
Q Consensus       250 v~~i~~~~~--v~~~dG~~~~~D~vi~atG~~~~-----~~~l~-----~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~i  317 (446)
                      |.++...+.  ........+.++.++++||..+.     ..++.     ++|.|.++.....+.+    . ++.|++|++
T Consensus        84 V~~~~~~~~~~~v~~~~~~~~~~~viva~G~~~~~~~~~~~~~~~~~e~~~g~i~~~~~~~~~~~----~-T~v~gV~aa  158 (190)
T d1trba1          84 INKVDLQNRPFRLNGDNGEYTCDALIIATGASARYHSPNTAIFEGQLELENGYIKVQSGIHGNAT----Q-TSIPGVFAA  158 (190)
T ss_dssp             EEEEECSSSSEEEEESSCEEEEEEEEECCCEEECCEEESCGGGTTTSCEETTEECCCCSSSSCTT----B-CSSTTEEEC
T ss_pred             eEEEecCCCcEEEEEeeeeEeeeeeeeecceeeeeecccceeecceEecCCcEEEEecCCccccc----c-cccCeEEEe
Confidence            455443322  22334556889999999997654     33332     3455666654332222    2 558999999


Q ss_pred             cCCCcc
Q 013303          318 GIPQKV  323 (446)
Q Consensus       318 G~~~~~  323 (446)
                      |++...
T Consensus       159 GDv~~~  164 (190)
T d1trba1         159 GDVMDH  164 (190)
T ss_dssp             GGGGCS
T ss_pred             EEecCc
Confidence            987643

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.86  E-value=9.3e-09  Score=95.93  Aligned_cols=63  Identities=11%  Similarity=0.152  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEe-CCCceEEEEEcEEEEccCCCC
Q 013303          102 HEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRK-KDDVVEEETFDAVVVCNGHFS  166 (446)
Q Consensus       102 ~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~-~~~~~~~~~~d~VVvAtG~~s  166 (446)
                      +..+...|.+.+++.++.  |+.++.|..+..+++...-+...+ .+++...+.++.||+|||.+.
T Consensus       157 G~~i~~~l~~~~~~~gv~--i~~~~~~~~li~~~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~  220 (336)
T d2bs2a2         157 GHTMLFAVANECLKLGVS--IQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYG  220 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCE--EECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCG
T ss_pred             HHHHHHHHHHHHHhcccc--ccceeeeeecccccccccceeEEeccCCcEEEEecCeEEEeccccc
Confidence            567888888889999988  999999998877662223344444 345677899999999999543

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.83  E-value=9.1e-10  Score=98.22  Aligned_cols=41  Identities=24%  Similarity=0.362  Sum_probs=38.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI   42 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~   42 (446)
                      .+||+|||||++||+||..|++.|++|+|||+++.+||.+.
T Consensus         5 ~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG~~~   45 (297)
T d2bcgg1           5 DYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAA   45 (297)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCcceE
Confidence            47999999999999999999999999999999999999765

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.83  E-value=1.7e-10  Score=96.57  Aligned_cols=153  Identities=20%  Similarity=0.325  Sum_probs=84.9

Q ss_pred             eEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccCCC
Q 013303            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQAY   83 (446)
Q Consensus         4 ~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~d~   83 (446)
                      +|+|||||++|+.+|..|++ +.+|+|+++.+.+.    +..                  ....       ..   +   
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~----~~~------------------~~~~-------~~---~---   45 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPY----YSK------------------PMLS-------HY---I---   45 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCC----CCS------------------TTHH-------HH---H---
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEecccccc----ccc------------------cchh-------hh---h---
Confidence            79999999999999999965 77999999865321    100                  0000       00   0   


Q ss_pred             CCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccC
Q 013303           84 PFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNG  163 (446)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG  163 (446)
                                   ..+.....+..+..++.++.+++  ++++++|+.++...   . +...++.    ++.||.||+|+|
T Consensus        46 -------------~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~---~-~~~~~~~----~i~~D~li~a~G  102 (167)
T d1xhca1          46 -------------AGFIPRNRLFPYSLDWYRKRGIE--IRLAEEAKLIDRGR---K-VVITEKG----EVPYDTLVLATG  102 (167)
T ss_dssp             -------------TTSSCGGGGCSSCHHHHHHHTEE--EECSCCEEEEETTT---T-EEEESSC----EEECSEEEECCC
T ss_pred             -------------hhhhhhhhhhHHHHHHHHhccce--eeeecccccccccc---c-ccccccc----ccccceeEEEEE
Confidence                         00000111222234445566776  88899999887432   2 3333433    689999999999


Q ss_pred             CCCCCccC-CCCCCCCCCccEEEeeecCCCC--CCC-----CCEEEEEecCCcHHHHHHHHhc
Q 013303          164 HFSVPRLA-QVPGIDSWPGKQMHSHNYRIPN--PFQ-----DQVVILIGHYASGLDIKRDLAG  218 (446)
Q Consensus       164 ~~s~p~~p-~i~G~~~~~g~~~hs~~~~~~~--~~~-----~k~VvVVG~G~sg~eia~~l~~  218 (446)
                        ..|..+ .-.|++.-.+ +.....++...  -|.     ..+.+++|++..|.+.|..+++
T Consensus       103 --~~~~~~~~~~gl~~~~~-i~v~~~~~t~~~~i~aiGD~~~~~~~~~~~~~~a~~~a~~~a~  162 (167)
T d1xhca1         103 --APNVDLARRSGIHTGRG-ILIDDNFRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLAD  162 (167)
T ss_dssp             --EECCHHHHHTTCCBSSS-EECCTTSBCSSTTEEECGGGEEBTTBCCCSHHHHHHHHHHHHH
T ss_pred             --ecCCchhhhcCceeCCc-eeeccccEecCCCeEEeeecccCCCeEEChHHHHHHHHHHHHH
Confidence              444321 2234433222 22222222211  121     1223456788888888887765

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.82  E-value=1e-09  Score=101.09  Aligned_cols=41  Identities=39%  Similarity=0.584  Sum_probs=38.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI   42 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~   42 (446)
                      .|+|+|||||+|||+||..|++.|++|+|||+++.+||.+.
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~   41 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLR   41 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcCceE
Confidence            48999999999999999999999999999999999999664

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.82  E-value=9.1e-10  Score=101.26  Aligned_cols=42  Identities=29%  Similarity=0.470  Sum_probs=39.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~   43 (446)
                      |+||+|||||+|||+||+.|++.|++|+|||+++++||.+..
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~~~t   42 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYT   42 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCE
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccceEE
Confidence            689999999999999999999999999999999999998754

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=2e-10  Score=100.32  Aligned_cols=51  Identities=16%  Similarity=0.214  Sum_probs=38.7

Q ss_pred             HHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccCCCCCCccCCCCC
Q 013303          114 REFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNGHFSVPRLAQVPG  175 (446)
Q Consensus       114 ~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG~~s~p~~p~i~G  175 (446)
                      ++.+++  ++++++|++|+..+   .+|++.++.    ++.||.||+|||  +.|..+.+++
T Consensus        94 ~~~gI~--~~~g~~V~~id~~~---~~V~l~dG~----~i~~d~lViAtG--~~~~~~~l~~  144 (213)
T d1m6ia1          94 ENGGVA--VLTGKKVVQLDVRD---NMVKLNDGS----QITYEKCLIATG--GTEPNVELAK  144 (213)
T ss_dssp             TTCEEE--EEETCCEEEEEGGG---TEEEETTSC----EEEEEEEEECCC--EEEECCTTHH
T ss_pred             HHCCeE--EEeCCEEEEeeccC---ceeeeccce----eeccceEEEeee--eecchhhhhh
Confidence            445666  88999999998654   467777665    799999999999  6666555543

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.78  E-value=8.6e-09  Score=88.11  Aligned_cols=132  Identities=15%  Similarity=0.154  Sum_probs=79.6

Q ss_pred             CCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc-----c------ccccCCCC--------------------CCee
Q 013303          197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD-----E------THEKQPGY--------------------DNMW  245 (446)
Q Consensus       197 ~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~-----~------~~~~~~~~--------------------~~v~  245 (446)
                      .++|+|||||++|++.|..+++.|.+|.++.+....     .      ........                    +.-.
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q~~~~g~~i   84 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTI   84 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEE
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccchhhhccccccccccchHHHHHHHHHHHhhccee
Confidence            378999999999999999999999999999865430     0      00001000                    1001


Q ss_pred             eccceeEEccCCc--EEecCCcEEeecEEEEecCcc-----CCCCCC------CCCCeeeeCCCCcccccccccCCCCCC
Q 013303          246 LHSMVERANEDGT--VVFRNGRVVSADVIMHCTGYK-----YNYPFL------ETNGIVTVDDNRVGPLYKHVFPPVLAP  312 (446)
Q Consensus       246 ~~~~v~~i~~~~~--v~~~dG~~~~~D~vi~atG~~-----~~~~~l------~~~g~i~~~~~~~~~l~~~~~~~~~~p  312 (446)
                      ....|.+++..+.  ....+..+..+|.+++++|..     |+..++      ++.|.|.+++...        . ++.|
T Consensus        85 ~~~~V~~~~~~~~~~~v~~~~~~~~~~~~~~a~g~~~~g~~p~~~~~~~~veld~~G~i~~~~~~~--------~-Ts~~  155 (192)
T d1vdca1          85 FTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAKGHEPATKFLDGGVELDSDGYVVTKPGTT--------Q-TSVP  155 (192)
T ss_dssp             ECCCCCEEECSSSSEEEECSSEEEEEEEEEECCCEEECCEEESCGGGTTSSCBCTTSCBCCCTTSC--------B-CSST
T ss_pred             eeeeEEecccccCcEEecccceeeeeeeEEEEeeeeecccCchHHHhcCceeecCCCeEEeCCCce--------E-ecCC
Confidence            1223445543332  333455667899999999864     555553      4455565554322        2 5589


Q ss_pred             CeEEecCCCccCc--hhHHHHHHHHHH
Q 013303          313 GLSFVGIPQKVIP--FPFFELQSKWIA  337 (446)
Q Consensus       313 ~l~~iG~~~~~~~--~~~~~~qa~~~a  337 (446)
                      ++|++|++.....  ...+.-++..+|
T Consensus       156 GV~a~GDv~~~~~r~~v~A~g~G~~aA  182 (192)
T d1vdca1         156 GVFAAGDVQDKKYRQAITAAGTGCMAA  182 (192)
T ss_dssp             TEEECGGGGCSSCCCHHHHHHHHHHHH
T ss_pred             CEEEeeecCCcccceEEEEEechHHHH
Confidence            9999998764332  233444444444

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.76  E-value=2e-09  Score=96.93  Aligned_cols=40  Identities=28%  Similarity=0.560  Sum_probs=37.1

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCCCcCceee
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGEQVGGSWI   42 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~~~GG~w~   42 (446)
                      .||+|||||+|||+||..|++.|+ +|+|||+++.+||.+.
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~GG~~~   41 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMH   41 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSC
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCCceEE
Confidence            489999999999999999999996 7999999999999764

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.75  E-value=2.4e-09  Score=99.03  Aligned_cols=43  Identities=28%  Similarity=0.626  Sum_probs=40.0

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~   43 (446)
                      ++|+|+|||||++||+||..|++.|++|+|||+++++||.+..
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~~~t   43 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYD   43 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCeeeE
Confidence            3689999999999999999999999999999999999998743

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.75  E-value=3.1e-10  Score=96.59  Aligned_cols=37  Identities=27%  Similarity=0.362  Sum_probs=32.0

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV   37 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~   37 (446)
                      |+.+|+|||||++|+.+|..|++.|.++.+++..+..
T Consensus         2 m~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~   38 (183)
T d1d7ya1           2 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEA   38 (183)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSC
T ss_pred             CCCCEEEECccHHHHHHHHHHHhcCCceEEEEEeccc
Confidence            6789999999999999999999999887777765543

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=3e-09  Score=99.46  Aligned_cols=41  Identities=32%  Similarity=0.524  Sum_probs=38.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI   42 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~   42 (446)
                      .+||+|||||+|||+||..|++.|++|+|||+++++||...
T Consensus         5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr~~   45 (449)
T d2dw4a2           5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVA   45 (449)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcccEE
Confidence            56899999999999999999999999999999999999543

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.71  E-value=3e-09  Score=83.71  Aligned_cols=82  Identities=16%  Similarity=0.218  Sum_probs=56.8

Q ss_pred             CCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC----ccc-----cccCCCCC-CeeeccceeEEcc-----CCc--
Q 013303          196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA----DET-----HEKQPGYD-NMWLHSMVERANE-----DGT--  258 (446)
Q Consensus       196 ~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~----~~~-----~~~~~~~~-~v~~~~~v~~i~~-----~~~--  258 (446)
                      .+++++|||+|++|+|+|..+++.|.+|+++.|+..    +..     .+.+.+.+ ++..+..|+++..     ++.  
T Consensus        19 ~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~l~~~D~~~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~~~   98 (122)
T d1h6va2          19 CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLK   98 (122)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSTTSCHHHHHHHHHHHHHTTEEEEESCEEEEEEEEECSTTCEEE
T ss_pred             CCCeEEEECCCccHHHHHHHHhhcCCeEEEEEechhhccCCHHHHHHHHHHHHHCCCEEEECCEEEEEEEecCCCccEEE
Confidence            458999999999999999999999999999987642    111     11122222 5666777777742     112  


Q ss_pred             EEecCC---c--EEeecEEEEecC
Q 013303          259 VVFRNG---R--VVSADVIMHCTG  277 (446)
Q Consensus       259 v~~~dG---~--~~~~D~vi~atG  277 (446)
                      +.+.++   +  .+++|.|++|+|
T Consensus        99 v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          99 VTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             EEEECTTSCEEEEEEESEEECCCC
T ss_pred             EEEEECCCCcEEEEECCEEEEEeC
Confidence            444332   2  356999999998

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=98.68  E-value=6.1e-10  Score=94.27  Aligned_cols=36  Identities=22%  Similarity=0.304  Sum_probs=31.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCC--CcEEEEeeCCCc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREG--HTVVVYEKGEQV   37 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g--~~v~v~e~~~~~   37 (446)
                      .|+|+|||||++|+.+|..|++.+  .+|+|+|+.+..
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~   39 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDY   39 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCE
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCcc
Confidence            479999999999999999999987  489999997643

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.66  E-value=2.3e-08  Score=94.87  Aligned_cols=126  Identities=17%  Similarity=0.228  Sum_probs=69.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHH------CCCcEEEEeeCCCcCceeeeCCCCCCCCCC---CCCCC----CCccCCcc-C
Q 013303            2 FRHVAVIGAGAAGLVVGHELLR------EGHTVVVYEKGEQVGGSWIYTSETESDPLG---VDPNR----YPVHSSLY-K   67 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~------~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g---~~p~~----~~~~~~~y-~   67 (446)
                      .+||+||||||||++||..|++      .|++|+||||...+|.........  .+.+   +.|..    ........ .
T Consensus        32 e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~Ggvl--~~~~l~~l~p~~~~~~~~~~~~~~~~  109 (380)
T d2gmha1          32 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACL--DPRAFEELFPDWKEKGAPLNTPVTED  109 (380)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEE--CTHHHHHHCTTHHHHTCCCCEECCEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCccccccc--cHHHHHHHccchhhhccccccceecc
Confidence            3799999999999999999998      799999999998875432110000  0000   00000    00000000 0


Q ss_pred             ceeecCCCCCcccCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcC
Q 013303           68 SLRVNLPRELMGFQAYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVE  135 (446)
Q Consensus        68 ~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~  135 (446)
                      ............+...+...    .............+..++...++..+..  +..+..+..+...+
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~Ae~~g~~--~~~~~~~~~~l~~~  171 (380)
T d2gmha1         110 RFGILTEKYRIPVPILPGLP----MNNHGNYVVRLGHLVSWMGEQAEALGVE--VYPGYAAAEILFHE  171 (380)
T ss_dssp             EEEEECSSCEEECCCCTTST----TCCTTCEECCHHHHHHHHHHHHHHTTCE--EETTCCEEEEEECT
T ss_pred             eEEEeeccccccccccCchh----cccccceeehhhHHHHHHHHHHhhccce--eeeecceeeeeecc
Confidence            11111111111111111000    0111233457789999999999999887  78888888877665

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.65  E-value=4.6e-08  Score=90.13  Aligned_cols=38  Identities=21%  Similarity=0.303  Sum_probs=33.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCCCcCc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGG   39 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG   39 (446)
                      ..||+|||+|+|||+||.++++.  |.+|+|+||....||
T Consensus         5 ~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~g   44 (311)
T d1kf6a2           5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRS   44 (311)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGS
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCCC
Confidence            36999999999999999999986  679999999875544

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=6.6e-08  Score=84.01  Aligned_cols=137  Identities=17%  Similarity=0.120  Sum_probs=85.0

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecCC------------------ccccc---cCCCCCCee------------
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA------------------DETHE---KQPGYDNMW------------  245 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~------------------~~~~~---~~~~~~~v~------------  245 (446)
                      .|+|||+|+.|+..|..+++.|.+|.++.+...                  .+.+.   .......+.            
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~~   83 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWETLI   83 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEeccCcCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccccHHHHH
Confidence            589999999999999999999999999987542                  00000   000000000            


Q ss_pred             ------------------eccceeEEccCC-----cEEecCCcEEeecEEEEecCccCCCCCCC---------------C
Q 013303          246 ------------------LHSMVERANEDG-----TVVFRNGRVVSADVIMHCTGYKYNYPFLE---------------T  287 (446)
Q Consensus       246 ------------------~~~~v~~i~~~~-----~v~~~dG~~~~~D~vi~atG~~~~~~~l~---------------~  287 (446)
                                        ....|+-+....     .....++..+.++.+++|||..|..|-++               +
T Consensus        84 ~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~~~~~~~~~~~~~~~~~iiatG~~p~ip~ip~~~~l~l~~~gv~~~~  163 (217)
T d1gesa1          84 ASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVNGETITADHILIATGGRPSHPREPANDNINLEAAGVKTNE  163 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETTEEEETTEEEEEEEEEECCCEEECCCEEESCTTSCHHHHTCCBCT
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeEEEEeeecccceeeeecCCCceeeeeeeeeecCccccCCCCCCcCCcccccccEEEcC
Confidence                              001122111111     12335667789999999999987765321               2


Q ss_pred             CCeeeeCCCCcccccccccCCCCCCCeEEecCCCccC-chhHHHHHHHHHHHHHcCCCC
Q 013303          288 NGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI-PFPFFELQSKWIASVLSGRIV  345 (446)
Q Consensus       288 ~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~-~~~~~~~qa~~~a~~l~g~~~  345 (446)
                      .+.+.+|+...          ++.|+||++|....+. ..+.+..+++-++..+.|..+
T Consensus       164 ~~~i~~d~~~~----------t~~~~i~~iG~g~~g~ela~~~~~~G~~v~~~~~~~~p  212 (217)
T d1gesa1         164 KGYIVVDKYQN----------TNIEGIYAVGDNTGAVELTPVAVAAGRRLSERLFNNKP  212 (217)
T ss_dssp             TSCBCCCTTSB----------CSSTTEEECSGGGTSCCCHHHHHHHHHHHHHHHHTTCT
T ss_pred             CccEeeCchhc----------cCCCcEEEECCCccHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            23333333333          4478999999776444 456778888888888777654

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.57  E-value=7.4e-08  Score=90.79  Aligned_cols=32  Identities=28%  Similarity=0.395  Sum_probs=30.6

Q ss_pred             eEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            4 HVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         4 ~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      ||+|||+|++|+.+|..|++.|++|+|+|+..
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   35 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ   35 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             eEEEeCcCHHHHHHHHHHHHCcCeEEEEecCC
Confidence            89999999999999999999999999999953

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=3e-07  Score=85.29  Aligned_cols=64  Identities=11%  Similarity=-0.088  Sum_probs=45.2

Q ss_pred             CHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceE--EEEEeCCCceEEEEEcEEEEccCCCC
Q 013303          101 GHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWK--VKSRKKDDVVEEETFDAVVVCNGHFS  166 (446)
Q Consensus       101 ~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~--v~~~~~~~~~~~~~~d~VVvAtG~~s  166 (446)
                      .+..+...|.+.+++.++.  +..++.+..+....++.-.  +.....+++...+.++.||+|||.+.
T Consensus       141 ~G~~i~~~L~~~~~~~~v~--~~~~~~~~~l~~~~~~~~~g~~~~~~~~g~~~~~~a~~vIlAtGG~~  206 (330)
T d1neka2         141 TGHALLHTLYQQNLKNHTT--IFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAG  206 (330)
T ss_dssp             HHHHHHHHHHHHHHHTTCE--EECSEEEEEEEECTTSCEEEEEEEETTTCCEEEEEESCEEECCCCCG
T ss_pred             cHHHHHHHHHHHHHhcCCe--EEEEEEEEEeeeeccccceeeeeEEccCCcEEEEeccEEEEcCCCcc
Confidence            4578888898989888887  7778888877664433222  22333345677899999999999543

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=98.49  E-value=2.4e-07  Score=87.28  Aligned_cols=61  Identities=18%  Similarity=0.208  Sum_probs=42.4

Q ss_pred             HHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCC--C---ceEEEEEcEEEEccCCCCCCcc
Q 013303          108 YLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKD--D---VVEEETFDAVVVCNGHFSVPRL  170 (446)
Q Consensus       108 yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~--~---~~~~~~~d~VVvAtG~~s~p~~  170 (446)
                      ||....+.-++.  |+.+++|++|..++++.+.|.+...+  +   ...++.+|.||||.|....|.+
T Consensus       228 ~L~~a~~~g~~~--i~t~~~V~~I~~~~~~~~~V~v~~~~~~~~~~~~~~~~A~~VILaAGai~Tp~L  293 (370)
T d3coxa1         228 YLAQAAATGKLT--ITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTSKL  293 (370)
T ss_dssp             HHHHHHHTTCEE--EECSEEEEEEEECSSSSEEEEEEEECTTSCEEEEEEEEEEEEEECSHHHHHHHH
T ss_pred             HHHHHHhCCCcE--EEecCcEEEEEEcCCCeEEEEEEEeCCccceeeEEEEECCEEEEeeCHHHhHHH
Confidence            444433333455  88999999999887667777766433  2   2357899999999997555544

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.46  E-value=2.1e-07  Score=87.13  Aligned_cols=38  Identities=24%  Similarity=0.254  Sum_probs=33.2

Q ss_pred             CCeEEEECcChHHHHHHHHHHH----CCCcEEEEeeCCCcCc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLR----EGHTVVVYEKGEQVGG   39 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~----~g~~v~v~e~~~~~GG   39 (446)
                      ..||+|||||+|||+||.+|++    .|++|+|+||....||
T Consensus        21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg   62 (356)
T d1jnra2          21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERS   62 (356)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTC
T ss_pred             ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCC
Confidence            4699999999999999999976    6899999999876654

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.44  E-value=7.5e-08  Score=85.81  Aligned_cols=38  Identities=26%  Similarity=0.372  Sum_probs=33.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGG   39 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG   39 (446)
                      .+||+|||||++||++|..|+++|++|+||||....+|
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~~~~   43 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDV   43 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCT
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            47899999999999999999999999999999764333

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.39  E-value=1.1e-07  Score=80.18  Aligned_cols=36  Identities=25%  Similarity=0.367  Sum_probs=32.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV   37 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~   37 (446)
                      .++|+|||||++|+.+|..|++.|.++++++..+..
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~   38 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDAT   38 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCcc
Confidence            469999999999999999999999999988877644

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.36  E-value=1.1e-06  Score=73.75  Aligned_cols=114  Identities=15%  Similarity=0.123  Sum_probs=71.2

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecCCcccccc-----CCCC-------------------C-CeeeccceeEE
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEK-----QPGY-------------------D-NMWLHSMVERA  253 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~~~~~~-----~~~~-------------------~-~v~~~~~v~~i  253 (446)
                      .|+|||||++|++.|..+++.|.+|.++.++........     ....                   . +......+..+
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL   82 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEecCCcccccccceeccccchhhhHHHHHHHHHHhhheeceeeccceeeee
Confidence            599999999999999999999999999987542111100     0000                   0 01111122222


Q ss_pred             ccC---C---cEEecCCcEEeecEEEEecCccCCCCCC-------CCCCeeeeCCCCcccccccccCCCCCCCeEEecCC
Q 013303          254 NED---G---TVVFRNGRVVSADVIMHCTGYKYNYPFL-------ETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIP  320 (446)
Q Consensus       254 ~~~---~---~v~~~dG~~~~~D~vi~atG~~~~~~~l-------~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~  320 (446)
                      ...   .   .....++.++.++.++.++|..++...+       ...|.+.+|+...          ++.|++|++|++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~i~v~~~~~----------t~~~gv~a~gd~  152 (184)
T d1fl2a1          83 IPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEGAVERNRMGEIIIDAKCE----------TNVKGVFAAGDC  152 (184)
T ss_dssp             ECCSSTTCCEEEEETTSCEEEEEEEEECCCEEEESCGGGTTTSCBCTTSCBCCCTTCB----------CSSTTEEECSTT
T ss_pred             cccccccceeeeeeecceeeecccccccccccccccccccccccccccceeccCCcee----------eeCCCEEEEeee
Confidence            211   1   1334566788999999999987654332       2234566666554          558999999987


Q ss_pred             Cc
Q 013303          321 QK  322 (446)
Q Consensus       321 ~~  322 (446)
                      ..
T Consensus       153 ~~  154 (184)
T d1fl2a1         153 TT  154 (184)
T ss_dssp             BS
T ss_pred             cC
Confidence            54

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.32  E-value=3e-07  Score=74.87  Aligned_cols=38  Identities=18%  Similarity=0.218  Sum_probs=32.5

Q ss_pred             CCCCCEEEEEecCCcHHHHHHHHhccC-CEEEEEEecCC
Q 013303          194 PFQDQVVILIGHYASGLDIKRDLAGFA-KEVHIASRSVA  231 (446)
Q Consensus       194 ~~~~k~VvVVG~G~sg~eia~~l~~~~-~~V~l~~r~~~  231 (446)
                      ...+++|+|||||.+|+|+|..+.+.| ++|++++|++.
T Consensus        42 p~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~   80 (153)
T d1gtea3          42 PSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGF   80 (153)
T ss_dssp             CCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCG
T ss_pred             ccCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCCh
Confidence            345789999999999999999998885 67999998764

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.30  E-value=1.3e-07  Score=87.07  Aligned_cols=42  Identities=24%  Similarity=0.406  Sum_probs=38.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHC--CCcEEEEeeCCCcCceeee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLRE--GHTVVVYEKGEQVGGSWIY   43 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~--g~~v~v~e~~~~~GG~w~~   43 (446)
                      .+||+||||||+||+||..|+++  |++|+|||+++.+||.+..
T Consensus        50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (311)
T d2gjca1          50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL   93 (311)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcceeEe
Confidence            36899999999999999999964  8999999999999998764

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.27  E-value=1.8e-06  Score=70.51  Aligned_cols=35  Identities=14%  Similarity=0.218  Sum_probs=30.7

Q ss_pred             CeEEEE--CcChHHHHHHHHHHHCCCcEEEEeeCCCc
Q 013303            3 RHVAVI--GAGAAGLVVGHELLREGHTVVVYEKGEQV   37 (446)
Q Consensus         3 ~~V~II--GaG~aGl~aA~~l~~~g~~v~v~e~~~~~   37 (446)
                      +.|+||  |||..|+.+|..|++.|.+|+++++.+.+
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~   76 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLA   76 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred             CceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            456665  99999999999999999999999997655

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=98.23  E-value=7.9e-07  Score=78.98  Aligned_cols=33  Identities=30%  Similarity=0.322  Sum_probs=30.7

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      ..|+|||+|++|+-.|..|++.|.+|.++.+.+
T Consensus         5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~   37 (253)
T d2gqfa1           5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGK   37 (253)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            359999999999999999999999999999875

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.17  E-value=2.3e-06  Score=70.25  Aligned_cols=50  Identities=16%  Similarity=0.103  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCceEEEEEeCCCceEEEEEcEEEEccC
Q 013303          106 LRYLQNFAREFGVDQVVRLHTEVLNARLVESNKWKVKSRKKDDVVEEETFDAVVVCNG  163 (446)
Q Consensus       106 ~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~~~~~~~~~~d~VVvAtG  163 (446)
                      ........++.++.  +..+++|..++.   +...+..   .+.++++.||.||+|+|
T Consensus       111 ~~~~~~~~~~~gv~--~~~~~~v~~i~~---~gv~~~~---~g~e~~i~aD~Vv~A~G  160 (162)
T d1ps9a2         111 GWIHRTTLLSRGVK--MIPGVSYQKIDD---DGLHVVI---NGETQVLAVDNVVICAG  160 (162)
T ss_dssp             HHHHHHHHHHTTCE--EECSCEEEEEET---TEEEEEE---TTEEEEECCSEEEECCC
T ss_pred             hHHHHHHHhhCCeE--EEeeeEEEEEcC---CCCEEec---CCeEEEEECCEEEECCC
Confidence            34456667777877  888999999863   2233332   34456789999999999

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.17  E-value=1.3e-06  Score=79.47  Aligned_cols=34  Identities=24%  Similarity=0.180  Sum_probs=31.6

Q ss_pred             CCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       197 ~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      +|+|+|||+|++|+-.|..|++.|.+|+++.+++
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            5899999999999999999999999999998753

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.11  E-value=7.6e-07  Score=82.94  Aligned_cols=35  Identities=29%  Similarity=0.439  Sum_probs=31.8

Q ss_pred             CeEEEECcChHHHHHHHHHH-----HCCCcEEEEeeCCCc
Q 013303            3 RHVAVIGAGAAGLVVGHELL-----REGHTVVVYEKGEQV   37 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~-----~~g~~v~v~e~~~~~   37 (446)
                      +||+||||||+||++|..|+     +.|++|+|||+.+.+
T Consensus         8 yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~   47 (360)
T d1pn0a1           8 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   47 (360)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence            79999999999999999996     469999999998654

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.10  E-value=8.5e-07  Score=83.29  Aligned_cols=36  Identities=28%  Similarity=0.492  Sum_probs=33.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV   37 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~   37 (446)
                      .+||||||+|++|+++|..|++.|++|+|+|++...
T Consensus         4 ~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~   39 (379)
T d2f5va1           4 KYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID   39 (379)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             cccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCC
Confidence            579999999999999999999999999999996543

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.08  E-value=4.1e-06  Score=72.29  Aligned_cols=38  Identities=26%  Similarity=0.295  Sum_probs=32.2

Q ss_pred             CCCCCEEEEEecCCcHHHHHHHHh--------------------cc-CCEEEEEEecCC
Q 013303          194 PFQDQVVILIGHYASGLDIKRDLA--------------------GF-AKEVHIASRSVA  231 (446)
Q Consensus       194 ~~~~k~VvVVG~G~sg~eia~~l~--------------------~~-~~~V~l~~r~~~  231 (446)
                      .+.+++|+|||+|++|+|+|..++                    +. .++|+++.|+.+
T Consensus        36 ~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~   94 (216)
T d1lqta1          36 DLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP   94 (216)
T ss_dssp             CCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred             cccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECCh
Confidence            467999999999999999998876                    23 568999999875

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.06  E-value=8.1e-07  Score=81.25  Aligned_cols=40  Identities=38%  Similarity=0.504  Sum_probs=33.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWI   42 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~   42 (446)
                      .+||+|||+|+|||+||.++++.| +|+|+||.+..||.-.
T Consensus         7 ~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~gG~s~   46 (305)
T d1chua2           7 SCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEGSTF   46 (305)
T ss_dssp             ECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTTC----
T ss_pred             cCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCCCCchH
Confidence            479999999999999999998888 9999999987777543

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=1.5e-06  Score=72.46  Aligned_cols=37  Identities=16%  Similarity=0.236  Sum_probs=34.5

Q ss_pred             CCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       195 ~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      ..+|+|+|||+|++|++.|..|++.|.+|+++.+.+.
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~   77 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE   77 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCc
Confidence            4679999999999999999999999999999999775

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=97.99  E-value=4.1e-05  Score=59.59  Aligned_cols=97  Identities=14%  Similarity=0.140  Sum_probs=72.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||+|-+++-.|..|++..-+|+++-|.+.+                                            
T Consensus        27 ~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~--------------------------------------------   62 (126)
T d1trba2          27 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF--------------------------------------------   62 (126)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC--------------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecccc--------------------------------------------
Confidence            589999999999999999999998899999876422                                            


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCce-EEEEEeCC-C-ceEEEEEcEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW-KVKSRKKD-D-VVEEETFDAV  158 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~-~v~~~~~~-~-~~~~~~~d~V  158 (446)
                                        ...+.+.+.+.+..+.-++.  +.+++.+..+.-++ ... .|++.+.. + +.+++.+|.|
T Consensus        63 ------------------~~~~~~~~~~~~~~~~~~i~--~~~~~~v~~i~G~~-~~v~~v~l~~~~~~e~~~~l~~dgv  121 (126)
T d1trba2          63 ------------------RAEKILIKRLMDKVENGNII--LHTNRTLEEVTGDQ-MGVTGVRLRDTQNSDNIESLDVAGL  121 (126)
T ss_dssp             ------------------CCCHHHHHHHHHHHHTSSEE--EECSCEEEEEEECS-SSEEEEEEECCTTCCCCEEEECSEE
T ss_pred             ------------------cchhHHHHHHHHhhccccee--EecceEEEEEECCC-CceEEEEEEECCCCceEEEEECCEE
Confidence                              01145566666666555555  78899999998764 333 46676643 2 3467899999


Q ss_pred             EEccC
Q 013303          159 VVCNG  163 (446)
Q Consensus       159 VvAtG  163 (446)
                      +++.|
T Consensus       122 Fv~iG  126 (126)
T d1trba2         122 FVAIG  126 (126)
T ss_dssp             EECSC
T ss_pred             EEEeC
Confidence            99987

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.97  E-value=4.2e-05  Score=61.69  Aligned_cols=34  Identities=26%  Similarity=0.304  Sum_probs=29.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCc-EEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHT-VVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~-v~v~e~~~   35 (446)
                      .++|+|||||-+|+-+|..+.+.|.+ |+++.+.+
T Consensus        45 ~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          45 RGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            36899999999999999999999864 78887754

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=97.93  E-value=7.2e-06  Score=72.67  Aligned_cols=35  Identities=23%  Similarity=0.265  Sum_probs=32.3

Q ss_pred             CCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       196 ~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      ..++|+|||+|++|+-+|..|++.|.+|+++.+++
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~   37 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSP   37 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            35799999999999999999999999999999864

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.91  E-value=3.8e-06  Score=74.70  Aligned_cols=32  Identities=25%  Similarity=0.344  Sum_probs=29.7

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      .|+|||+|+.|+..|..+++.|.+|.++.+..
T Consensus         3 DviVIG~G~aG~~aA~~aa~~G~~V~liE~~~   34 (259)
T d1onfa1           3 DLIVIGGGSGGMAAARRAARHNAKVALVEKSR   34 (259)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            38999999999999999999999999999754

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.90  E-value=3.3e-05  Score=60.11  Aligned_cols=94  Identities=22%  Similarity=0.259  Sum_probs=67.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||+|-+.+-.|..|++..-+|+++-+.+.+    .                                       
T Consensus        30 gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~----~---------------------------------------   66 (126)
T d1fl2a2          30 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEM----K---------------------------------------   66 (126)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSC----C---------------------------------------
T ss_pred             CceEEEEeCCHHHHHHHHhhhccCCceEEEeccccc----c---------------------------------------
Confidence            589999999999999999999988899999886522    0                                       


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHH-hCCCCcEEeCeEEEEEEEcCCCceEEEEEeC-CCceEEEEEcEEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFARE-FGVDQVVRLHTEVLNARLVESNKWKVKSRKK-DDVVEEETFDAVV  159 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~-~~l~~~i~~~~~V~~v~~~~~~~~~v~~~~~-~~~~~~~~~d~VV  159 (446)
                           .              .+    .+.+.+.. -++.  +.++++|..+.-+++.--.|.+.+. +++.+++.+|.|+
T Consensus        67 -----~--------------~~----~~~~~~~~~~~I~--v~~~~~v~~i~G~~~~v~~v~l~~~~tge~~~l~vdgvF  121 (126)
T d1fl2a2          67 -----A--------------DQ----VLQDKLRSLKNVD--IILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIF  121 (126)
T ss_dssp             -----S--------------CH----HHHHHHHTCTTEE--EESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEE
T ss_pred             -----c--------------cc----cccccccccccee--EEcCcceEEEEccccceeeEEEEECCCCCEEEEECCEEE
Confidence                 0              01    12222222 2344  8899999999875422334666664 3567889999999


Q ss_pred             EccC
Q 013303          160 VCNG  163 (446)
Q Consensus       160 vAtG  163 (446)
                      ++-|
T Consensus       122 v~IG  125 (126)
T d1fl2a2         122 VQIG  125 (126)
T ss_dssp             ECSC
T ss_pred             EEeC
Confidence            9988

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.89  E-value=4e-06  Score=70.90  Aligned_cols=36  Identities=14%  Similarity=0.175  Sum_probs=32.8

Q ss_pred             CCCEEEEEecCCcHHHHHHHHhccCC-EEEEEEecCC
Q 013303          196 QDQVVILIGHYASGLDIKRDLAGFAK-EVHIASRSVA  231 (446)
Q Consensus       196 ~~k~VvVVG~G~sg~eia~~l~~~~~-~V~l~~r~~~  231 (446)
                      .+|||+|||+|++|+++|..|++.|. +|+++.+++.
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            36899999999999999999999997 5999999875

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=97.83  E-value=8.6e-06  Score=73.86  Aligned_cols=167  Identities=18%  Similarity=0.204  Sum_probs=105.6

Q ss_pred             CCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc-----------------c----------------c--------
Q 013303          196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD-----------------E----------------T--------  234 (446)
Q Consensus       196 ~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~-----------------~----------------~--------  234 (446)
                      +.-.|+|||+|+||+-+|..|.+.|.+|+++.+.+..                 .                .        
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p~~~   85 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQP   85 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHH
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccCccc
Confidence            3457999999999999999999999999999886530                 0                0        


Q ss_pred             -----c----ccCCCCCCeeeccceeEEc--cC-Cc--EEecCCcEEeecEEEEecCcc--CCCCCC---C---CCCeee
Q 013303          235 -----H----EKQPGYDNMWLHSMVERAN--ED-GT--VVFRNGRVVSADVIMHCTGYK--YNYPFL---E---TNGIVT  292 (446)
Q Consensus       235 -----~----~~~~~~~~v~~~~~v~~i~--~~-~~--v~~~dG~~~~~D~vi~atG~~--~~~~~l---~---~~g~i~  292 (446)
                           +    ++..-...+.++++|.++.  ++ +.  |.+.++.+..+|.||.|||+.  |..|.+   +   .+|...
T Consensus        86 e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~ls~~~~p~~~~~~i~g~~g~~l  165 (298)
T d1w4xa1          86 EILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSDALTGALFKIDIRGVGNVAL  165 (298)
T ss_dssp             HHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCTTHHHHTSEEECGGGCBH
T ss_pred             hHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecccccccCCcccccccccCCCeee
Confidence                 0    0000012467778888885  22 22  888899999999999999975  333222   2   222111


Q ss_pred             eCCCCccc-ccccccCCCCCCCeEEecCCCcc----CchhHHHHHHHHHHHHHc-----CCCCCCCHHHHHHHHHHHHHH
Q 013303          293 VDDNRVGP-LYKHVFPPVLAPGLSFVGIPQKV----IPFPFFELQSKWIASVLS-----GRIVLPSQDEMMEDVKAFYSK  362 (446)
Q Consensus       293 ~~~~~~~~-l~~~~~~~~~~p~l~~iG~~~~~----~~~~~~~~qa~~~a~~l~-----g~~~lp~~~~m~~~~~~~~~~  362 (446)
                      -+.....| -|..+..+. .||+|+++-+...    ....++|.|+.++++.|.     |...+-.+++.++++.++.+.
T Consensus       166 ~~~W~~~p~ty~G~~v~g-fPN~f~~~Gp~s~~~~~~~~~~~e~q~~~i~~~i~~~~~~~~~~ve~~~~a~~~~~~~~~~  244 (298)
T d1w4xa1         166 KEKWAAGPRTYLGLSTAG-FPNLFFIAGPGSPSALSNMLVSIEQHVEWVTDHIAYMFKNGLTRSEAVLEKEDEWVEHVNE  244 (298)
T ss_dssp             HHHTTTSCCCBTTTBCTT-STTEEESSCTTSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCCCEEECHHHHHHHHHHHHH
T ss_pred             hhhchhhHHHHHHHhcCC-CCeEEEecCCCCccccccHHHHHHHHHHHHHHHHHHHHhcCCCEEEechHHHHHHHHHHHH
Confidence            12222223 566666666 9999998655422    233567999999998875     333333344445544444433


Q ss_pred             H
Q 013303          363 L  363 (446)
Q Consensus       363 ~  363 (446)
                      +
T Consensus       245 ~  245 (298)
T d1w4xa1         245 I  245 (298)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.81  E-value=1.7e-05  Score=70.38  Aligned_cols=151  Identities=17%  Similarity=0.072  Sum_probs=100.0

Q ss_pred             ccEEEeeecCCCCCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc----------------------cccccC
Q 013303          181 GKQMHSHNYRIPNPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD----------------------ETHEKQ  238 (446)
Q Consensus       181 g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~----------------------~~~~~~  238 (446)
                      +..+...+...+   +.-.|+|||+|+.|++.|..+++.|.+|+++.+.+.-                      ..+...
T Consensus        29 ~~~~~~~~~~~~---k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~n~GcvP~k~l~~~a~~~~~~~~~  105 (261)
T d1mo9a1          29 GEVIYNVDENDP---REYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTF  105 (261)
T ss_dssp             CCEEEECCTTCC---SCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHT
T ss_pred             CceEecCCCCCC---ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccccccccchHHHHhhHHhHHHHHHh
Confidence            345554443333   3347999999999999999999999999999986530                      000000


Q ss_pred             CC--------CCCeee------------------------ccceeE-EccCCc-----EEecCCcEEeecEEEEecCccC
Q 013303          239 PG--------YDNMWL------------------------HSMVER-ANEDGT-----VVFRNGRVVSADVIMHCTGYKY  280 (446)
Q Consensus       239 ~~--------~~~v~~------------------------~~~v~~-i~~~~~-----v~~~dG~~~~~D~vi~atG~~~  280 (446)
                      ..        ...+..                        ...+.. +.....     ....+|+++++|.||+|||.+|
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~v~~~g~~i~ad~viiAtG~~P  185 (261)
T d1mo9a1         106 SGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHTVEAAGKVFKAKNLILAVGAGP  185 (261)
T ss_dssp             TTSTTCCCCTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEETTEEEETTEEEEBSCEEECCCEEC
T ss_pred             hhhccccccccccccHHHHHHHHHHHHHhhhhhHHHHhhhcccceeEeeeEEEEeeecccccccceEeeeeeeeccCCCC
Confidence            00        000000                        000111 111111     2335788899999999999999


Q ss_pred             CCCCCC-----------------CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcC
Q 013303          281 NYPFLE-----------------TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSG  342 (446)
Q Consensus       281 ~~~~l~-----------------~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g  342 (446)
                      +.+.+.                 +.|.|.+|++++          |+.|+||++|++... ...+.+..|++.+|.++.|
T Consensus       186 ~~~~i~~~~~~~~l~~~~Gl~~~~~G~I~Vn~~~~----------Ts~~~IyA~GDv~~~~~l~~~A~~~G~~aa~~i~G  255 (261)
T d1mo9a1         186 GTLDVPEQPRSAELAKILGLDLGPKGEVLVNEYLQ----------TSVPNVYAVGDLIGGPMEMFKARKSGCYAARNVMG  255 (261)
T ss_dssp             CCCCSTCEECCHHHHHHHTCCBCTTSCBCCCTTSB----------CSSTTEEECGGGGCSSCSHHHHHHHHHHHHHHHTT
T ss_pred             CcCcccccccccccccceeeeeccCCEEEeCCCcc----------cCCCCEEEEEEeCCCcccHHHHHHHHHHHHHHHCC
Confidence            987653                 456677777766          679999999998643 3457789999999999998


Q ss_pred             CC
Q 013303          343 RI  344 (446)
Q Consensus       343 ~~  344 (446)
                      +.
T Consensus       256 ~k  257 (261)
T d1mo9a1         256 EK  257 (261)
T ss_dssp             CC
T ss_pred             CC
Confidence            63

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=97.80  E-value=5.3e-06  Score=73.10  Aligned_cols=32  Identities=28%  Similarity=0.211  Sum_probs=30.0

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      .|+|||+|++|+-+|..|++.|.+|.++.+.+
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~   35 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGN   35 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            49999999999999999999999999999865

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=97.79  E-value=2.5e-05  Score=67.09  Aligned_cols=83  Identities=17%  Similarity=0.152  Sum_probs=56.3

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecCC---------------cccc------------------c-cCCCCCCe
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA---------------DETH------------------E-KQPGYDNM  244 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~---------------~~~~------------------~-~~~~~~~v  244 (446)
                      .|+|||+|+.|++.|...++.|.++.++..+..               ...+                  + .+....++
T Consensus         4 DVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~~~nL   83 (230)
T d2cula1           4 QVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRPL   83 (230)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTTE
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhhhcCH
Confidence            599999999999999999999999999986421               0000                  0 00011222


Q ss_pred             ee-ccceeEEc-cCCc---EEecCCcEEeecEEEEecCccCC
Q 013303          245 WL-HSMVERAN-EDGT---VVFRNGRVVSADVIMHCTGYKYN  281 (446)
Q Consensus       245 ~~-~~~v~~i~-~~~~---v~~~dG~~~~~D~vi~atG~~~~  281 (446)
                      .+ ...|..+. +++.   |++.+|.++.+..||+|||...+
T Consensus        84 ~i~q~~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTFL~  125 (230)
T d2cula1          84 HLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLG  125 (230)
T ss_dssp             EEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSS
T ss_pred             HHHhccceeeEecccceeeEEeccccEEEEeEEEEccCccee
Confidence            22 23455543 2332   77889999999999999997654

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.73  E-value=1.8e-05  Score=68.57  Aligned_cols=38  Identities=24%  Similarity=0.296  Sum_probs=33.5

Q ss_pred             CCCCCEEEEEecCCcHHHHHHHHhc---------------------cCCEEEEEEecCC
Q 013303          194 PFQDQVVILIGHYASGLDIKRDLAG---------------------FAKEVHIASRSVA  231 (446)
Q Consensus       194 ~~~~k~VvVVG~G~sg~eia~~l~~---------------------~~~~V~l~~r~~~  231 (446)
                      .+.+++|+|||+|.+|+|+|..+.+                     ..++|+++.|++.
T Consensus        36 ~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~   94 (225)
T d1cjca1          36 DLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP   94 (225)
T ss_dssp             CTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             cccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcCh
Confidence            4679999999999999999999987                     3478999999875

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=97.72  E-value=1.1e-05  Score=75.19  Aligned_cols=35  Identities=26%  Similarity=0.548  Sum_probs=32.7

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      +.+|++|||+|+||+.+|..|++.|.+|+|+|+..
T Consensus         1 t~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~   35 (360)
T d1kdga1           1 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGG   35 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CcCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence            46899999999999999999999999999999963

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.72  E-value=1.1e-05  Score=74.44  Aligned_cols=33  Identities=24%  Similarity=0.289  Sum_probs=29.6

Q ss_pred             CEEEEEecCCcHHHHHHHHhccC--CEEEEEEecC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFA--KEVHIASRSV  230 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~--~~V~l~~r~~  230 (446)
                      |+|+|||+|+||+-+|..|++.+  .+|+++.+++
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            79999999999999999998765  5999999875

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.67  E-value=3.7e-06  Score=73.65  Aligned_cols=32  Identities=31%  Similarity=0.315  Sum_probs=28.5

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKG   34 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~   34 (446)
                      ++|+|||||++||++|.+|+++|++|+++|+.
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~e~~   32 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDV   32 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEE
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCceEEeee
Confidence            47999999999999999999999887777763

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.66  E-value=1.1e-05  Score=59.42  Aligned_cols=77  Identities=18%  Similarity=0.200  Sum_probs=54.8

Q ss_pred             CCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCccccccCCCCCCeeeccceeEEccCCcEEecC-Cc-EE-eec
Q 013303          194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVERANEDGTVVFRN-GR-VV-SAD  270 (446)
Q Consensus       194 ~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~~~~~~~~~~~~v~~~~~v~~i~~~~~v~~~d-G~-~~-~~D  270 (446)
                      +|+||+|+|+|.|.||.-+|..|.+.|.+|+++..+...+....+...               ..+.+.. .+ .+ .+|
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~d   66 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEA---------------VERHTGSLNDEWLMAAD   66 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSCTT---------------SCEEESBCCHHHHHHCS
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHhhc---------------cceeecccchhhhccCC
Confidence            589999999999999999999999999999999876653322222111               1112111 11 12 489


Q ss_pred             EEEEecCccCCCCCC
Q 013303          271 VIMHCTGYKYNYPFL  285 (446)
Q Consensus       271 ~vi~atG~~~~~~~l  285 (446)
                      .||.++|..++.|++
T Consensus        67 ~vi~SPGi~~~~~~~   81 (93)
T d2jfga1          67 LIVASPGIALAHPSL   81 (93)
T ss_dssp             EEEECTTSCTTSHHH
T ss_pred             EEEECCCCCCCCHHH
Confidence            999999998887764

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.59  E-value=3.6e-05  Score=56.46  Aligned_cols=34  Identities=29%  Similarity=0.350  Sum_probs=32.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .|+|+|||.|.+|+++|+.|.+.|.+|+++|.+.
T Consensus         5 ~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~   38 (93)
T d2jfga1           5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRM   38 (93)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSS
T ss_pred             CCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCc
Confidence            5789999999999999999999999999999865

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.50  E-value=0.00026  Score=55.03  Aligned_cols=93  Identities=16%  Similarity=0.184  Sum_probs=65.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeeeCCCCCCCCCCCCCCCCCccCCccCceeecCCCCCcccC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIYTSETESDPLGVDPNRYPVHSSLYKSLRVNLPRELMGFQ   81 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~~~~~~~~~~g~~p~~~~~~~~~y~~l~~~~~~~~~~~~   81 (446)
                      .++|+|||+|-+.+-.|..|++.--+|+++-|.+.+-+                                          
T Consensus        34 gk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra------------------------------------------   71 (130)
T d1vdca2          34 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA------------------------------------------   71 (130)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS------------------------------------------
T ss_pred             CCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccccc------------------------------------------
Confidence            58999999999999999999998889999988653300                                          


Q ss_pred             CCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEeCeEEEEEEEcCCCce--EEEEEeC-CCceEEEEEcEE
Q 013303           82 AYPFVARNYEGSVDLRRYPGHEEVLRYLQNFAREFGVDQVVRLHTEVLNARLVESNKW--KVKSRKK-DDVVEEETFDAV  158 (446)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~~~i~~~~~V~~v~~~~~~~~--~v~~~~~-~~~~~~~~~d~V  158 (446)
                                          .+..   .++..+.-++.  +.++++|..+.-+....+  .+.+.+. +++..++.+|.|
T Consensus        72 --------------------~~~~---~~~l~~~~nI~--v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGv  126 (130)
T d1vdca2          72 --------------------SKIM---QQRALSNPKID--VIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGL  126 (130)
T ss_dssp             --------------------CHHH---HHHHHTCTTEE--EECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEE
T ss_pred             --------------------chhh---hhccccCCceE--EEeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECCEE
Confidence                                0122   22222222444  889999999987542222  3566653 456778999999


Q ss_pred             EEc
Q 013303          159 VVC  161 (446)
Q Consensus       159 VvA  161 (446)
                      +||
T Consensus       127 FVa  129 (130)
T d1vdca2         127 FFA  129 (130)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            987

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.45  E-value=3.4e-05  Score=67.16  Aligned_cols=37  Identities=22%  Similarity=0.289  Sum_probs=34.2

Q ss_pred             CCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       195 ~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      ..+|+|+|||+|++|+..|..|++.|.+|+++.+++.
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK   83 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence            4679999999999999999999999999999998764

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=97.44  E-value=4.1e-05  Score=72.13  Aligned_cols=35  Identities=31%  Similarity=0.390  Sum_probs=32.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCC-CcEEEEeeCCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGEQ   36 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g-~~v~v~e~~~~   36 (446)
                      .+|++|||||+||+.+|..|++.+ ++|+|+|++..
T Consensus        24 tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~   59 (391)
T d1gpea1          24 TYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY   59 (391)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             eeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence            379999999999999999999988 79999999853

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=97.38  E-value=4.3e-05  Score=71.87  Aligned_cols=34  Identities=26%  Similarity=0.398  Sum_probs=31.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCC-CcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g-~~v~v~e~~~   35 (446)
                      .+|++|||||+||+.+|..|++.+ ++|+|+|++.
T Consensus        17 tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~   51 (385)
T d1cf3a1          17 TVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   51 (385)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSC
T ss_pred             eEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence            379999999999999999999876 8999999975

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.29  E-value=0.0001  Score=60.65  Aligned_cols=147  Identities=14%  Similarity=0.163  Sum_probs=83.1

Q ss_pred             CCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC--ccccccCCCCCCeeeccceeEEccCCcEEecCCcEEeecE
Q 013303          194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA--DETHEKQPGYDNMWLHSMVERANEDGTVVFRNGRVVSADV  271 (446)
Q Consensus       194 ~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~--~~~~~~~~~~~~v~~~~~v~~i~~~~~v~~~dG~~~~~D~  271 (446)
                      ..++|+|+|+|+|-+|--++..|.+.+.+|+++.|+..  ....+.+....      .+..+.      +.+-....+|.
T Consensus        15 ~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~------~~~~~~------~~~~~~~~~dl   82 (170)
T d1nyta1          15 IRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTG------SIQALS------MDELEGHEFDL   82 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGS------SEEECC------SGGGTTCCCSE
T ss_pred             CCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcc------cccccc------cccccccccce
Confidence            45789999999999999999999999999999988764  11111111111      111111      11111235899


Q ss_pred             EEEec--CccCCCCCCCCCCeeeeCCCCcccccccccCCCCCCCeE---EecCCCccCchhHHHHHHHHHHHHHcCCCCC
Q 013303          272 IMHCT--GYKYNYPFLETNGIVTVDDNRVGPLYKHVFPPVLAPGLS---FVGIPQKVIPFPFFELQSKWIASVLSGRIVL  346 (446)
Q Consensus       272 vi~at--G~~~~~~~l~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~---~iG~~~~~~~~~~~~~qa~~~a~~l~g~~~l  346 (446)
                      ||-||  |..++.+.++.+. +  ....  -+|+-++.|...|-+-   ..|.........|.-.||...-+.|.|..  
T Consensus        83 iIN~Tp~G~~~~~~~~~~~~-~--~~~~--~v~D~vY~P~~T~ll~~A~~~G~~~~i~Gl~MLi~Qa~~~f~lwtG~~--  155 (170)
T d1nyta1          83 IINATSSGISGDIPAIPSSL-I--HPGI--YCYDMFYQKGKTPFLAWCEQRGSKRNADGLGMLVAQAAHAFLLWHGVL--  155 (170)
T ss_dssp             EEECCSCGGGTCCCCCCGGG-C--CTTC--EEEESCCCSSCCHHHHHHHHTTCCEEECTHHHHHHHHHHHHHHHHSSC--
T ss_pred             eecccccCcccCCCCCcHHH-h--ccCc--EEEEeecCCCCCHHHHHHHHcCCCcccCCHHHHHHHHHHHHHHHhCCC--
Confidence            99999  4444433322110 0  1110  1233333332111111   11322122356888999999999999964  


Q ss_pred             CCHHHHHHHHHHH
Q 013303          347 PSQDEMMEDVKAF  359 (446)
Q Consensus       347 p~~~~m~~~~~~~  359 (446)
                      |..++|.+.+.+.
T Consensus       156 ~~~~~~~~~l~~~  168 (170)
T d1nyta1         156 PDVEPVIKQLQEE  168 (170)
T ss_dssp             CCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHh
Confidence            6778888766653

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.28  E-value=0.00011  Score=61.02  Aligned_cols=34  Identities=24%  Similarity=0.417  Sum_probs=32.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      +|+|+|||||..|++.|..|++.|++|+++++.+
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4799999999999999999999999999999864

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=97.27  E-value=5.2e-05  Score=70.28  Aligned_cols=33  Identities=24%  Similarity=0.460  Sum_probs=30.2

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~   36 (446)
                      +|++|||||+||+.+|..|++. .+|+|+|++..
T Consensus        27 YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~~   59 (351)
T d1ju2a1          27 YDYVIVGGGTSGCPLAATLSEK-YKVLVLERGSL   59 (351)
T ss_dssp             EEEEEECCSTTHHHHHHHHTTT-SCEEEECSSBC
T ss_pred             ccEEEECccHHHHHHHHHhcCC-CCEEEEecCCC
Confidence            6999999999999999999876 99999999753

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.24  E-value=0.00011  Score=60.76  Aligned_cols=35  Identities=20%  Similarity=0.166  Sum_probs=32.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~   36 (446)
                      .|+|+|||||-.|..+|+.|.+.|++|+|+||+..
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            58999999999999999999999999999998753

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=97.19  E-value=0.00011  Score=65.33  Aligned_cols=32  Identities=22%  Similarity=0.150  Sum_probs=30.0

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      .|+|||+|.+|+-+|.+|++.|.+|+++.+..
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            59999999999999999999999999999854

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.14  E-value=0.00011  Score=63.02  Aligned_cols=138  Identities=9%  Similarity=0.037  Sum_probs=91.7

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC---------------------ccccccCCCC---C----C--ee--
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA---------------------DETHEKQPGY---D----N--MW--  245 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~---------------------~~~~~~~~~~---~----~--v~--  245 (446)
                      ..++|||+|+.|++.|..+++.|.+|+++.+...                     .....++...   +    .  ..  
T Consensus         6 ~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~~GG~c~~~gc~p~k~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   85 (220)
T d1lvla1           6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRLDIG   85 (220)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCCCHH
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcccccccccchhhhhhHHHHhhhhhccccccceEEeccceehHH
Confidence            4699999999999999999999999999987542                     0001111100   0    0  00  


Q ss_pred             ---------------------eccceeEEccCCc-----EEecCCcEEeecEEEEecCccCCCC-C---C----------
Q 013303          246 ---------------------LHSMVERANEDGT-----VVFRNGRVVSADVIMHCTGYKYNYP-F---L----------  285 (446)
Q Consensus       246 ---------------------~~~~v~~i~~~~~-----v~~~dG~~~~~D~vi~atG~~~~~~-~---l----------  285 (446)
                                           ....+.-+.+...     ....++.++.+|.||+|||.+|..+ .   .          
T Consensus        86 ~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~~~~~~~~~~~~~~~~i~a~~viiAtG~~p~~lp~~~~~~~~~~~~~~~  165 (220)
T d1lvla1          86 QSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVDGQRIQCEHLLLATGSSSVELPRRPRTKGFNLECLDL  165 (220)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEETTEEEETTEEEECSEEEECCCEEECCBTEEECCSSSSGGGSCC
T ss_pred             HHhhhheeEEeeeccchhhhhccCceEEEEeeecccCcccccccceeEeeceeeEcCCCCcccccccccccCCcceeeeh
Confidence                                 0011222221111     2234556789999999999988642 1   1          


Q ss_pred             -CCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCCCC
Q 013303          286 -ETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGRIV  345 (446)
Q Consensus       286 -~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~~~  345 (446)
                       .+.+.|.+|+.++          ++.|+||++|++... ...+.+..|++.+|++++|+..
T Consensus       166 ~~~~g~i~vd~~~~----------T~~~~I~A~GDv~~~~~l~~~a~~~g~~~a~~i~G~~~  217 (220)
T d1lvla1         166 KMNGAAIAIDERCQ----------TSMHNVWAIGDVAGEPMLAHRAMAQGEMVAEIIAGKAR  217 (220)
T ss_dssp             CEETTEECCCTTCB----------CSSTTEEECGGGGCSSCCHHHHHHHHHHHHHHHTTCCC
T ss_pred             hhcCCcccccchhh----------cCCCCEEEEEEeCCcccchhhhhhhHHHHHHHHcCCCC
Confidence             1245677887777          679999999988644 3456788999999999999753

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=97.08  E-value=0.00015  Score=65.47  Aligned_cols=32  Identities=13%  Similarity=0.320  Sum_probs=28.9

Q ss_pred             EEEEEecCCcHHHHHHHHhccC-CEEEEEEecC
Q 013303          199 VVILIGHYASGLDIKRDLAGFA-KEVHIASRSV  230 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~-~~V~l~~r~~  230 (446)
                      +|+|||+|.+|+-+|..|++.| ++|+++.++.
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            5999999999999999999998 5799998763

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=96.91  E-value=0.00033  Score=62.21  Aligned_cols=32  Identities=19%  Similarity=0.159  Sum_probs=29.8

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      .|+|||+|.+|+-+|.+|++.|.+|+++.+..
T Consensus         5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~~   36 (281)
T d2gf3a1           5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            59999999999999999999999999998753

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.87  E-value=0.00076  Score=59.46  Aligned_cols=34  Identities=18%  Similarity=0.178  Sum_probs=30.8

Q ss_pred             CEEEEEecCCcHHHHHHHHhccC-CEEEEEEecCC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFA-KEVHIASRSVA  231 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~-~~V~l~~r~~~  231 (446)
                      -+|+|||+|++|+-+|..|++.| .+|+++.+++.
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE   36 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            37999999999999999999999 59999998764

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.82  E-value=0.0003  Score=60.08  Aligned_cols=136  Identities=15%  Similarity=0.085  Sum_probs=87.6

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc------------ccc-----------ccCCC----CCC--------
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD------------ETH-----------EKQPG----YDN--------  243 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~------------~~~-----------~~~~~----~~~--------  243 (446)
                      .|+|||+|++|+..|..+++.|.+|+++.+.+.-            ..+           .....    ...        
T Consensus         5 DvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~   84 (221)
T d1dxla1           5 DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDLAAM   84 (221)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeeecchhhhhhhhhHhHHHHHHHhhhhhhcCeecccceecHHHH
Confidence            5999999999999999999999999999876430            000           00000    000        


Q ss_pred             -----------------eeeccceeEEc------cCCcEE----ecCCcEEeecEEEEecC-----ccCCCCCC------
Q 013303          244 -----------------MWLHSMVERAN------EDGTVV----FRNGRVVSADVIMHCTG-----YKYNYPFL------  285 (446)
Q Consensus       244 -----------------v~~~~~v~~i~------~~~~v~----~~dG~~~~~D~vi~atG-----~~~~~~~l------  285 (446)
                                       ......|+-+.      ......    ..++..+.+|.||+|||     +.|+.+.|      
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~a~~VIiATGs~~~gr~p~~~~l~l~~~g  164 (221)
T d1dxla1          85 MGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKGRTPFTSGLNLDKIG  164 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCEEECCEEECCTTSCCTTTT
T ss_pred             HHHHHHHHHHHhhHHHHhhhcCCeEEEEeccccccccccccccccccccccccceEEEeECCCccCccccCCCCChHhcC
Confidence                             00001122221      111111    12334578999999999     56676654      


Q ss_pred             ---CCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCccC-chhHHHHHHHHHHHHHcCCC
Q 013303          286 ---ETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI-PFPFFELQSKWIASVLSGRI  344 (446)
Q Consensus       286 ---~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~-~~~~~~~qa~~~a~~l~g~~  344 (446)
                         ++.|.|.+|+..+          |+.|+||++|++..++ ..+.+..|++.+|++|+|+.
T Consensus       165 v~~~~~G~i~vd~~~~----------T~v~gi~A~GDv~~g~~l~~~A~~~g~~aa~~i~g~~  217 (221)
T d1dxla1         165 VETDKLGRILVNERFS----------TNVSGVYAIGDVIPGPMLAHKAEEDGVACVEYLAGKV  217 (221)
T ss_dssp             CCBCSSSCBCCCTTCB----------CSSTTEEECSTTSSSCCCHHHHHHHHHHHHHHHTTSC
T ss_pred             ceEcCCCcEEeCCCcc----------cCCCCEEEEeccCCCcccHHHHHHHHHHHHHHHcCCC
Confidence               2445555665554          6699999999987543 45678899999999999875

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.75  E-value=0.00069  Score=54.92  Aligned_cols=35  Identities=29%  Similarity=0.404  Sum_probs=32.2

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCc
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQV   37 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~   37 (446)
                      ++|+|||+|.-|...|..|++.|++|++++|.+..
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~   35 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQP   35 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHH
Confidence            58999999999999999999999999999997643

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.00073  Score=56.38  Aligned_cols=35  Identities=37%  Similarity=0.626  Sum_probs=32.6

Q ss_pred             CCCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            1 MFRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         1 ~~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      |.++|+|||||.-|...|..+++.|++|+++|+++
T Consensus         3 ~IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (192)
T d1f0ya2           3 IVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   37 (192)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             eeEEEEEECcCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            45899999999999999999999999999999865

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.72  E-value=0.00088  Score=53.81  Aligned_cols=34  Identities=18%  Similarity=0.330  Sum_probs=31.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .-+|+|||||.+|+.|++.+.+.|.+|++||.+.
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~   65 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV   65 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence            4589999999999999999999999999999863

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.71  E-value=0.00081  Score=52.37  Aligned_cols=33  Identities=21%  Similarity=0.485  Sum_probs=31.1

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      ++|+|+|+|.-|...|+.|.+.|++|+++|+++
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~   33 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   33 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence            579999999999999999999999999999865

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.65  E-value=0.00092  Score=54.47  Aligned_cols=34  Identities=29%  Similarity=0.296  Sum_probs=31.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .-+|+|||||.+|+.|++.+.+.|..|++||.+.
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~   62 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA   62 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccH
Confidence            3589999999999999999999999999999864

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.52  E-value=0.0011  Score=51.66  Aligned_cols=33  Identities=39%  Similarity=0.548  Sum_probs=31.1

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      |+++|||+|..|..+|..|.+.|++|+++|+++
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~   33 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   33 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence            679999999999999999999999999999864

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.51  E-value=0.00079  Score=59.95  Aligned_cols=32  Identities=28%  Similarity=0.237  Sum_probs=30.6

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      +|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            69999999999999999999999999999876

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.50  E-value=0.0012  Score=52.62  Aligned_cols=37  Identities=22%  Similarity=0.297  Sum_probs=33.7

Q ss_pred             CCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       194 ~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      +.+||+|+|||||..|.+-|..|.+.|.+|+++....
T Consensus        10 ~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~~   46 (150)
T d1kyqa1          10 QLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (150)
T ss_dssp             CCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             eeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            3579999999999999999999999999999997653

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.34  E-value=0.0012  Score=59.64  Aligned_cols=36  Identities=28%  Similarity=0.391  Sum_probs=33.3

Q ss_pred             CCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       196 ~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      +.|+|+|||||.||+-+|..|++.|.+|+++.+++.
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~   36 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            358999999999999999999999999999998875

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.33  E-value=0.0014  Score=55.07  Aligned_cols=33  Identities=24%  Similarity=0.404  Sum_probs=30.8

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      ++|+|||.|.-|+.+|..|++.|++|+++|.+.
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            479999999999999999999999999999864

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.32  E-value=0.0022  Score=48.34  Aligned_cols=34  Identities=21%  Similarity=0.219  Sum_probs=31.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .++|+|||||..|...|+.|++.|.+|++++...
T Consensus        12 ~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~   45 (113)
T d1pjqa1          12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (113)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            5799999999999999999999999999998654

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.30  E-value=0.0015  Score=54.15  Aligned_cols=34  Identities=24%  Similarity=0.412  Sum_probs=31.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .++|+|||||.-|...|..+++.|++|+++|+++
T Consensus         4 I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (186)
T d1wdka3           4 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINE   37 (186)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            3689999999999999999999999999999864

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.28  E-value=0.0015  Score=52.09  Aligned_cols=33  Identities=21%  Similarity=0.374  Sum_probs=30.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG   34 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~   34 (446)
                      .++|+|||||..|+..|+.|++.|.+|+|+...
T Consensus        13 gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            589999999999999999999999999999653

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=96.28  E-value=0.00094  Score=55.51  Aligned_cols=34  Identities=26%  Similarity=0.438  Sum_probs=31.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      |++|+|||||.-|.+.|..|++.|++|+++.+++
T Consensus         7 m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~   40 (189)
T d1n1ea2           7 LNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   40 (189)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred             eceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence            4689999999999999999999999999999864

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.16  E-value=0.0012  Score=59.73  Aligned_cols=36  Identities=25%  Similarity=0.345  Sum_probs=33.0

Q ss_pred             CCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       196 ~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      .+|+|+|||+|.+|+-.|..|++.|.+|+++.+++.
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~   64 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASER   64 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            468999999999999999999999999999998653

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.12  E-value=0.0022  Score=48.32  Aligned_cols=38  Identities=11%  Similarity=0.134  Sum_probs=34.2

Q ss_pred             CCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       194 ~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      +.+||+|+|||+|.+|..-|..|.+.|.+|+++.....
T Consensus         9 ~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~   46 (113)
T d1pjqa1           9 QLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFI   46 (113)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCC
T ss_pred             EeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            35789999999999999999999999999999876654

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.00  E-value=0.011  Score=47.76  Aligned_cols=143  Identities=12%  Similarity=0.130  Sum_probs=78.2

Q ss_pred             CCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCccccccCCCCCCeeeccceeEEccCCcEEecCCcEEeecEEE
Q 013303          194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIM  273 (446)
Q Consensus       194 ~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~~~~~~~~~~~~v~~~~~v~~i~~~~~v~~~dG~~~~~D~vi  273 (446)
                      ..++|+|+|+|+|-+|--++..|.+.+++|+++.|+...  .+.+.+  .+.....+..+.      +.+....++|.||
T Consensus        15 ~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~--a~~l~~--~~~~~~~~~~~~------~~~~~~~~~diiI   84 (171)
T d1p77a1          15 LRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSK--TKELAE--RFQPYGNIQAVS------MDSIPLQTYDLVI   84 (171)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHH--HHHHHH--HHGGGSCEEEEE------GGGCCCSCCSEEE
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHH--HHHHHH--HHhhccccchhh------hccccccccceee
Confidence            457899999999999999999998888999999998641  111100  000011112121      1122224589999


Q ss_pred             EecCccCC--CCCCCC----CCeeeeCCCCcccccccccCCCCCCCeEE-----ecCCCccCchhHHHHHHHHHHHHHcC
Q 013303          274 HCTGYKYN--YPFLET----NGIVTVDDNRVGPLYKHVFPPVLAPGLSF-----VGIPQKVIPFPFFELQSKWIASVLSG  342 (446)
Q Consensus       274 ~atG~~~~--~~~l~~----~g~i~~~~~~~~~l~~~~~~~~~~p~l~~-----iG~~~~~~~~~~~~~qa~~~a~~l~g  342 (446)
                      -||.....  .+.++.    .+.+.+|-...        +|  .++.|.     .|...-.....|.-.||...-+.|.|
T Consensus        85 N~tp~g~~~~~~~~~~~~~~~~~~~~D~vy~--------~p--~~T~~l~~A~~~g~~~v~~Gl~Ml~~Qa~~~f~iwtg  154 (171)
T d1p77a1          85 NATSAGLSGGTASVDAEILKLGSAFYDMQYA--------KG--TDTPFIALCKSLGLTNVSDGFGMLVAQAAHSFHLWRG  154 (171)
T ss_dssp             ECCCC-------CCCHHHHHHCSCEEESCCC--------TT--SCCHHHHHHHHTTCCCEECSHHHHHHHHHHHHHHHHS
T ss_pred             ecccccccccccchhhhhhcccceeeeeecc--------Cc--ccHHHHHHHHHcCCCcccCcHHHHHHHHHHHHHHHHC
Confidence            99976532  221111    01122221111        11  112111     22211113478899999999999999


Q ss_pred             CCCCCCHHHHHHHHHH
Q 013303          343 RIVLPSQDEMMEDVKA  358 (446)
Q Consensus       343 ~~~lp~~~~m~~~~~~  358 (446)
                      ..  |..+.|.+.+.+
T Consensus       155 ~~--~~~~~~~~~l~~  168 (171)
T d1p77a1         155 VM--PDFVSVYEQLKK  168 (171)
T ss_dssp             CC--CCHHHHHHHHHH
T ss_pred             CC--CChHHHHHHHHH
Confidence            64  667777766553

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=95.97  E-value=0.0021  Score=55.74  Aligned_cols=34  Identities=29%  Similarity=0.355  Sum_probs=31.6

Q ss_pred             CCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       197 ~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      .|+|+|||+|.+|+-+|..|++.|.+|+++.|..
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4789999999999999999999999999999854

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.0037  Score=52.88  Aligned_cols=136  Identities=18%  Similarity=0.149  Sum_probs=89.6

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecCC------------------c---cccccC------CCCCCe-------
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA------------------D---ETHEKQ------PGYDNM-------  244 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~------------------~---~~~~~~------~~~~~v-------  244 (446)
                      .|+|||+|+.|++.|..+++.|.+|.++.+...                  .   ......      .....+       
T Consensus         5 DviIIG~GpaG~~aA~~aar~G~kV~vIEk~~~GG~c~n~g~~~~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (221)
T d3grsa1           5 DYLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVIKE   84 (221)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGTSCCCCCCCCHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEeccCCCCccccchhhhhhhhhhHHHHHHHHhhhhhccccccccchhhhhhhh
Confidence            489999999999999999999999999987542                  0   000000      000000       


Q ss_pred             ----------------eeccceeEEccCC------cEE-ecCCcEEeecEEEEecCccCCCCC----------C------
Q 013303          245 ----------------WLHSMVERANEDG------TVV-FRNGRVVSADVIMHCTGYKYNYPF----------L------  285 (446)
Q Consensus       245 ----------------~~~~~v~~i~~~~------~v~-~~dG~~~~~D~vi~atG~~~~~~~----------l------  285 (446)
                                      .....|+-+.+.+      .+. ..+...+.+|.++++||..|..|.          |      
T Consensus        85 ~~~~~v~~~~~~~~~~~~~~gV~~i~G~a~~~~~~~~~~~~~~~~~~~~~~~iatG~~p~vp~~r~p~~~~l~L~~~gv~  164 (221)
T d3grsa1          85 KRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHERVPNTKDLSLNKLGIQ  164 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEESCCEECSCSSCEEEETTEEEECSCEEECCCEEECCCCTEEESCTTTTGGGTTCC
T ss_pred             hhheEEeeeccchhhhhccCceEEEEEeeeeccccceeeeeeccccccceeEEecCccccCCCccccCCCCcCchhcCcE
Confidence                            0012233343322      122 223355779999999998776542          2      


Q ss_pred             -CCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCcc-CchhHHHHHHHHHHHHHcCCC
Q 013303          286 -ETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKV-IPFPFFELQSKWIASVLSGRI  344 (446)
Q Consensus       286 -~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~-~~~~~~~~qa~~~a~~l~g~~  344 (446)
                       ++.|.|.+|+.++          |+.|+||++|++... ...+.+..|++.+|+.+.+..
T Consensus       165 ~~~~G~I~vd~~~~----------T~~~gvyA~GDv~~~~~l~~~A~~~G~~aa~~~~~~~  215 (221)
T d3grsa1         165 TDDKGHIIVDEFQN----------TNVKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFEYK  215 (221)
T ss_dssp             BCTTSCBCCCTTCB----------CSSTTEEECGGGGTSSCCHHHHHHHHHHHHHHHHSCC
T ss_pred             ECCCccEEeCCCcc----------ccCCcEEEEEEccCCcCcHHHHHHHHHHHHHHHcCCC
Confidence             3456677777766          679999999998654 356789999999999887643

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=95.83  E-value=0.0043  Score=49.30  Aligned_cols=34  Identities=15%  Similarity=0.412  Sum_probs=31.6

Q ss_pred             CCeEEEEC-cChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIG-AGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIG-aG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      +++|+||| .|.-|...|+.|++.|++|.++|+..
T Consensus         9 ~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2           9 IHKIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            57999999 69999999999999999999999864

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.80  E-value=0.0047  Score=50.24  Aligned_cols=35  Identities=17%  Similarity=0.189  Sum_probs=33.0

Q ss_pred             CCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       197 ~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      .|+|+|||+|.+|.-+|..|++.|.+|+++.|+..
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            68999999999999999999999999999999865

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=95.73  E-value=0.0049  Score=49.69  Aligned_cols=33  Identities=24%  Similarity=0.493  Sum_probs=30.7

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      ++|.|||+|.-|.+.|+.|.+.|++|+++|+++
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            479999999999999999999999999999864

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.67  E-value=0.0043  Score=50.90  Aligned_cols=32  Identities=28%  Similarity=0.514  Sum_probs=29.7

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKG   34 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~   34 (446)
                      ++|+|||||.-|.+.|..|++.|.+|+++.+.
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~   32 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTE   32 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            58999999999999999999999999999763

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.58  E-value=0.0034  Score=56.71  Aligned_cols=36  Identities=31%  Similarity=0.427  Sum_probs=32.4

Q ss_pred             CCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       196 ~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      +.++|+|||+|.+|+-.|..|++.|.+|+++..++.
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r   39 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR   39 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            346899999999999999999999999999987654

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.46  E-value=0.02  Score=46.47  Aligned_cols=139  Identities=17%  Similarity=0.213  Sum_probs=77.2

Q ss_pred             CCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc-ccc-ccCCCCCCeeeccceeEEccCCcEEecCCc--EEee
Q 013303          194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD-ETH-EKQPGYDNMWLHSMVERANEDGTVVFRNGR--VVSA  269 (446)
Q Consensus       194 ~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~-~~~-~~~~~~~~v~~~~~v~~i~~~~~v~~~dG~--~~~~  269 (446)
                      ..++|+|+|+|+|-+|--++..|.+.+ +|+++.|+... +.+ ..+..........         .+.+.+-.  ..++
T Consensus        15 ~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~   84 (177)
T d1nvta1          15 RVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGE---------EVKFSGLDVDLDGV   84 (177)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHH---------HEEEECTTCCCTTC
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhh---------hhhhhhhhhccchh
Confidence            358899999999999999999998776 89999887541 000 0000000000000         12232221  2348


Q ss_pred             cEEEEecCccC--CCCC---CCC----CCeeeeCCCCcccccccccCCCC--------CCCeEEecCCCccCchhHHHHH
Q 013303          270 DVIMHCTGYKY--NYPF---LET----NGIVTVDDNRVGPLYKHVFPPVL--------APGLSFVGIPQKVIPFPFFELQ  332 (446)
Q Consensus       270 D~vi~atG~~~--~~~~---l~~----~g~i~~~~~~~~~l~~~~~~~~~--------~p~l~~iG~~~~~~~~~~~~~q  332 (446)
                      |.+|-||..-.  +.+.   ++.    .+.+..|         -++.|..        .-+...+      ....|.-.|
T Consensus        85 dliIn~tp~g~~~~~~~~~~~~~~~~~~~~~v~D---------~~y~p~~T~l~~~a~~~G~~~i------~Gl~MLv~Q  149 (177)
T d1nvta1          85 DIIINATPIGMYPNIDVEPIVKAEKLREDMVVMD---------LIYNPLETVLLKEAKKVNAKTI------NGLGMLIYQ  149 (177)
T ss_dssp             CEEEECSCTTCTTCCSSCCSSCSTTCCSSSEEEE---------CCCSSSSCHHHHHHHTTTCEEE------CTHHHHHHH
T ss_pred             hhhccCCcccccccccccchhhhhccCcccceee---------ecCCcHhHHHHHHHHHCCCccc------CCHHHHHHH
Confidence            99999986532  2211   111    1112222         2221110        1123332      245788899


Q ss_pred             HHHHHHHHcCCCCCCCHHHHHHHHHHH
Q 013303          333 SKWIASVLSGRIVLPSQDEMMEDVKAF  359 (446)
Q Consensus       333 a~~~a~~l~g~~~lp~~~~m~~~~~~~  359 (446)
                      |...-+.|.|.  .|+.++|.+.+.+.
T Consensus       150 a~~qf~lwtg~--~~~~~~~r~~l~~~  174 (177)
T d1nvta1         150 GAVAFKIWTGV--EPNIEVMKNAIIDK  174 (177)
T ss_dssp             HHHHHHHHHSS--CCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHCC--CCCHHHHHHHHHHH
Confidence            99999999997  37788888766543

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.42  E-value=0.0029  Score=54.85  Aligned_cols=32  Identities=22%  Similarity=0.323  Sum_probs=29.2

Q ss_pred             EEEEEecCCcHHHHHHHHhccC-CEEEEEEecC
Q 013303          199 VVILIGHYASGLDIKRDLAGFA-KEVHIASRSV  230 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~-~~V~l~~r~~  230 (446)
                      +|+|||+|++|+-.|..|++.| ++|+++.+++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            5999999999999999999999 5799998765

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.42  E-value=0.0065  Score=51.97  Aligned_cols=32  Identities=13%  Similarity=0.154  Sum_probs=26.6

Q ss_pred             EEEEEecCCcHHHHHHHHhccC---CEEEEEEecC
Q 013303          199 VVILIGHYASGLDIKRDLAGFA---KEVHIASRSV  230 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~---~~V~l~~r~~  230 (446)
                      +|+|||+|+.|+..|..+++.+   .+|.++.+..
T Consensus         3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~   37 (233)
T d1xdia1           3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   37 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence            7999999999999988777654   5799998754

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=95.32  E-value=0.0035  Score=55.41  Aligned_cols=33  Identities=21%  Similarity=0.276  Sum_probs=30.6

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      +|+|||+|.+|+-.|..|++.|.+|+++.+++.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~   34 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSAR   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            699999999999999999999999999998653

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.29  E-value=0.0035  Score=53.68  Aligned_cols=33  Identities=18%  Similarity=0.046  Sum_probs=30.9

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      .|+|||+|.+|+-+|..|++.|.+|+++.+++.
T Consensus         7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~   39 (297)
T d2bcgg1           7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQDH   39 (297)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence            499999999999999999999999999999764

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.29  E-value=0.0078  Score=44.59  Aligned_cols=34  Identities=12%  Similarity=-0.000  Sum_probs=29.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .|+|+|||+|.+|+-.|..|++...++++.-+.+
T Consensus        32 gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          32 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             CCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            5899999999999999999998887877776643

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=95.26  E-value=0.0079  Score=47.33  Aligned_cols=34  Identities=21%  Similarity=0.414  Sum_probs=30.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC--cEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~--~v~v~e~~~   35 (446)
                      .++|+|||+|.-|.++|..|+..|+  +++++|..+
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            4699999999999999999999884  899999754

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.26  E-value=0.0043  Score=55.41  Aligned_cols=33  Identities=18%  Similarity=0.208  Sum_probs=30.8

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      .|+|||||.||+-+|..|++.|.+|+++.+++.
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~   35 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH   35 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            689999999999999999999999999998764

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.20  E-value=0.0085  Score=48.07  Aligned_cols=34  Identities=26%  Similarity=0.518  Sum_probs=31.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      |++|.|||-|.-|...|+.|++.|++|.++|++.
T Consensus         1 M~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~   34 (162)
T d3cuma2           1 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ   34 (162)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEEEEHHHHHHHHHHHHHCCCeEEEEECch
Confidence            5789999999999999999999999999999864

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=95.16  E-value=0.01  Score=47.09  Aligned_cols=34  Identities=29%  Similarity=0.372  Sum_probs=30.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~   35 (446)
                      +++|+|||+|.-|.++|..|+..++ +++++|..+
T Consensus         7 ~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           7 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            5799999999999999999888886 899999764

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.07  E-value=0.0088  Score=41.19  Aligned_cols=34  Identities=21%  Similarity=0.240  Sum_probs=31.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      +|+|.|||||--|...+....+.|+++.+++..+
T Consensus         1 ~k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~   34 (78)
T d3etja2           1 MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDA   34 (78)
T ss_dssp             CEEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTS
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCC
Confidence            4789999999999999999999999999999764

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.05  E-value=0.0047  Score=52.77  Aligned_cols=35  Identities=14%  Similarity=0.069  Sum_probs=31.2

Q ss_pred             CCEEEEEecCCcHHHHHHHHhccC-------CEEEEEEecCC
Q 013303          197 DQVVILIGHYASGLDIKRDLAGFA-------KEVHIASRSVA  231 (446)
Q Consensus       197 ~k~VvVVG~G~sg~eia~~l~~~~-------~~V~l~~r~~~  231 (446)
                      +.+|+|||+|++|+..|..|++.|       .+|+++.+.+.
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~   43 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   43 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence            469999999999999999999886       47999998775

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.95  E-value=0.0079  Score=49.93  Aligned_cols=32  Identities=28%  Similarity=0.342  Sum_probs=28.3

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      ++|+|||.|..||.+|..|+ .|++|+.+|-++
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~   32 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILP   32 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCH
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEEEECCH
Confidence            47999999999999998775 699999999764

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.92  E-value=0.038  Score=46.69  Aligned_cols=34  Identities=24%  Similarity=0.302  Sum_probs=29.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHC--------------------CC-cEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLRE--------------------GH-TVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~--------------------g~-~v~v~e~~~   35 (446)
                      .++|+|||+|-.++=+|+.|.+.                    |. +|.++.|+.
T Consensus        39 gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg   93 (225)
T d1cjca1          39 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG   93 (225)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred             CceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcC
Confidence            47999999999999999999983                    54 799998865

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.91  E-value=0.011  Score=48.56  Aligned_cols=33  Identities=33%  Similarity=0.479  Sum_probs=30.0

Q ss_pred             CeEEEE-CcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVI-GAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~II-GaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      ++|+|| |+|.-|.+.|+.|++.|++|++..|++
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            469999 679999999999999999999999864

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=94.89  E-value=0.012  Score=46.16  Aligned_cols=34  Identities=32%  Similarity=0.595  Sum_probs=30.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC--cEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~--~v~v~e~~~   35 (446)
                      .++|+|||+|..|.++|..|+..|+  +++++|..+
T Consensus         1 ~kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   36 (146)
T d1hyha1           1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (146)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            4799999999999999999999885  799999754

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=94.82  E-value=0.014  Score=45.58  Aligned_cols=34  Identities=26%  Similarity=0.407  Sum_probs=30.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~   35 (446)
                      +++|+|||+|--|.++|..|+..++ +++++|..+
T Consensus         1 r~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~   35 (142)
T d1uxja1           1 RKKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   35 (142)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence            4699999999999999999998876 899999754

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=94.69  E-value=0.017  Score=45.08  Aligned_cols=34  Identities=24%  Similarity=0.296  Sum_probs=30.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC--cEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~--~v~v~e~~~   35 (446)
                      +++|+|||+|--|.++|..|+..++  +++++|..+
T Consensus         1 r~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~   36 (142)
T d1y6ja1           1 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   36 (142)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccC
Confidence            3689999999999999999999986  799999765

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.61  E-value=0.014  Score=55.03  Aligned_cols=42  Identities=26%  Similarity=0.433  Sum_probs=39.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCCcCceeee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQVGGSWIY   43 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~~GG~w~~   43 (446)
                      .+||+|+|-|..=...|..|++.|.+|+-+|+++..||.|..
T Consensus         6 e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg~~aS   47 (491)
T d1vg0a1           6 DFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWAS   47 (491)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred             ccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCCCcccc
Confidence            479999999999999999999999999999999999999864

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.60  E-value=0.015  Score=46.51  Aligned_cols=33  Identities=30%  Similarity=0.528  Sum_probs=30.9

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      ++|.|||-|.-|...|+.|++.|++|.++|+++
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~   33 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   33 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            469999999999999999999999999999864

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=94.56  E-value=0.021  Score=45.46  Aligned_cols=34  Identities=18%  Similarity=0.368  Sum_probs=30.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC--cEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~--~v~v~e~~~   35 (446)
                      .++|+|||+|--|.++|..|...|+  +++++|..+
T Consensus        20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~   55 (160)
T d1i0za1          20 NNKITVVGVGQVGMACAISILGKSLADELALVDVLE   55 (160)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            4699999999999999999999997  899999854

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=94.49  E-value=0.02  Score=46.15  Aligned_cols=34  Identities=26%  Similarity=0.203  Sum_probs=31.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .++|+|+|+|=++-+++..|.+.|.+++|+.|+.
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          18 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            4799999999999999999999999999998863

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=94.46  E-value=0.022  Score=44.45  Aligned_cols=33  Identities=27%  Similarity=0.418  Sum_probs=29.6

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCC--cEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~--~v~v~e~~~   35 (446)
                      ++|+|||||--|.++|..|+..++  +++++|..+
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~   35 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence            479999999999999999999885  899999765

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=94.43  E-value=0.02  Score=46.45  Aligned_cols=34  Identities=18%  Similarity=0.281  Sum_probs=31.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      +.+|.|||-|.-|...|+.|++.|++|.++|+++
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~   35 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            4689999999999999999999999999999865

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.31  E-value=0.021  Score=47.46  Aligned_cols=34  Identities=26%  Similarity=0.495  Sum_probs=31.5

Q ss_pred             CCeEEEECc-ChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      +++|+|+|| |..|..++..|++.|++|+++.|+.
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~   37 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcCh
Confidence            689999997 9999999999999999999998853

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.31  E-value=0.028  Score=41.69  Aligned_cols=35  Identities=26%  Similarity=0.359  Sum_probs=31.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~   36 (446)
                      .++|.|||||--|...|..+.+.|+++.++|..+.
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            36899999999999999999999999999998753

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=94.27  E-value=0.025  Score=44.08  Aligned_cols=34  Identities=29%  Similarity=0.439  Sum_probs=30.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC--cEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~--~v~v~e~~~   35 (446)
                      +.+|+|||+|--|.++|..|...++  +++++|..+
T Consensus         1 p~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           1 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            3689999999999999999999986  799999754

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.26  E-value=0.024  Score=45.58  Aligned_cols=34  Identities=24%  Similarity=0.451  Sum_probs=29.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC--cEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~--~v~v~e~~~   35 (446)
                      |++|+|||.|.-|.+.|+.|.+.|+  +|..+|++.
T Consensus         1 Mk~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (171)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence            4689999999999999999999986  677788764

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.24  E-value=0.021  Score=44.90  Aligned_cols=34  Identities=32%  Similarity=0.452  Sum_probs=30.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC--cEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~--~v~v~e~~~   35 (446)
                      .++|+|||||--|.++|..|+..++  +++++|..+
T Consensus         6 ~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            3589999999999999999999886  799999754

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.23  E-value=0.023  Score=45.67  Aligned_cols=33  Identities=18%  Similarity=0.266  Sum_probs=30.0

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      ..|+|+|+|+.|+.++..++..|.+|++++.++
T Consensus        29 ~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~   61 (168)
T d1piwa2          29 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSS   61 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred             CEEEEECCCCcchhHHHHhhhccccccccccch
Confidence            579999999999999998888899999999864

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.23  E-value=0.011  Score=50.18  Aligned_cols=33  Identities=15%  Similarity=0.279  Sum_probs=29.3

Q ss_pred             EEEEEecCCcHHHHHHHHhcc--CCEEEEEEecCC
Q 013303          199 VVILIGHYASGLDIKRDLAGF--AKEVHIASRSVA  231 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~--~~~V~l~~r~~~  231 (446)
                      +|+|||+|++|+.+|..|++.  +.+|+++.+.+.
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            799999999999999999765  679999988764

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=94.14  E-value=0.02  Score=46.05  Aligned_cols=33  Identities=36%  Similarity=0.370  Sum_probs=30.2

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .+|+|+|+|+.|+.++..++..|.+|+++|+++
T Consensus        28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~   60 (170)
T d1e3ja2          28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP   60 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEEcccccchhhHhhHhhhcccccccchHH
Confidence            479999999999999999999999999999864

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=94.12  E-value=0.034  Score=41.40  Aligned_cols=34  Identities=15%  Similarity=0.253  Sum_probs=30.8

Q ss_pred             CCeEEEECcC-----------hHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAG-----------AAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG-----------~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .++|+|||+|           .++..|+++|++.|++++++..++
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NP   48 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNP   48 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCT
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecCh
Confidence            5789999999           589999999999999999998765

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=94.02  E-value=0.026  Score=45.76  Aligned_cols=33  Identities=24%  Similarity=0.472  Sum_probs=30.8

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      ++|.|||-|.-|...|++|++.|++|.++|++.
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~   34 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCH
Confidence            579999999999999999999999999999853

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.01  E-value=0.013  Score=49.16  Aligned_cols=137  Identities=17%  Similarity=0.132  Sum_probs=89.3

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCCc---------------------cccccCCC------CCCe------
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVAD---------------------ETHEKQPG------YDNM------  244 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~~---------------------~~~~~~~~------~~~v------  244 (446)
                      ..|+|||+|+.|++.|..+++.|.+|.++.+...-                     ........      ...+      
T Consensus         4 ~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (223)
T d1ebda1           4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAKVQ   83 (223)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEecCCCCcceeccccccccccccccchhhhhhhhhhhcccchhheeeHHHHh
Confidence            35999999999999999999999999999876530                     00000000      0000      


Q ss_pred             -----------------eeccceeE------EccCCc--EEec-CCcEEeecEEEEec--------CccCCCCCC-----
Q 013303          245 -----------------WLHSMVER------ANEDGT--VVFR-NGRVVSADVIMHCT--------GYKYNYPFL-----  285 (446)
Q Consensus       245 -----------------~~~~~v~~------i~~~~~--v~~~-dG~~~~~D~vi~at--------G~~~~~~~l-----  285 (446)
                                       .....|+-      +.....  +... ++.++.+|.+|+|+        |+.|++..|     
T Consensus        84 ~~~~~~v~~l~~~~~~~~~~~~V~~i~G~a~f~~~~~~~v~~~~~~~~~~~~~iiIa~g~~p~~~~G~~p~~~~l~l~~~  163 (223)
T d1ebda1          84 EWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAIIATGSRPIELVGRRPNTDELGLEQI  163 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEETTEEEEEETTEEEEEECSEEEECCCEEECCBSCEEESCSSSSTTTT
T ss_pred             hHHHHHHHHHHhhHHHhhhccceeeeccEEEEccCcccceeccccceEEecccEEEEcCCCccccccceecCCCCChHhc
Confidence                             00011221      222221  2222 33457789999885        888887754     


Q ss_pred             ----CCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCccC-chhHHHHHHHHHHHHHcCCC
Q 013303          286 ----ETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI-PFPFFELQSKWIASVLSGRI  344 (446)
Q Consensus       286 ----~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~-~~~~~~~qa~~~a~~l~g~~  344 (446)
                          ++.|.|.+|++++          |+.|+||++|++...+ ..+.+..|++.+|.++.|+.
T Consensus       164 gv~~~~~G~I~vd~~~~----------T~~~gvyA~GDv~~~~~~~~~A~~~g~~aa~~i~g~~  217 (223)
T d1ebda1         164 GIKMTNRGLIEVDQQCR----------TSVPNIFAIGDIVPGPALAHKASYEGKVAAEAIAGHP  217 (223)
T ss_dssp             TCCBCTTSCBCCCTTCB----------CSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTSCC
T ss_pred             CceECCCCCEeECCCCC----------CCCCCEEEEeccCCCcccHHHHHHHHHHHHHHHcCCC
Confidence                3455666666665          6699999999987544 34678899999999999874

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.87  E-value=0.014  Score=52.64  Aligned_cols=31  Identities=19%  Similarity=0.219  Sum_probs=29.2

Q ss_pred             EEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          200 VILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       200 VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      |+|||+|.+|+-.|..|++.|.+|+++.+++
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            8999999999999999999999999998754

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.85  E-value=0.025  Score=45.60  Aligned_cols=33  Identities=33%  Similarity=0.351  Sum_probs=29.6

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~   35 (446)
                      ..|+|+|+|+.|+.++..+...|. +|+++|+++
T Consensus        28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CEEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence            479999999999999999999998 699999764

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.85  E-value=0.027  Score=45.04  Aligned_cols=33  Identities=24%  Similarity=0.280  Sum_probs=30.0

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .+|+|+|+|+.|+.++..++..|.+|+++++++
T Consensus        29 ~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          29 QWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence            579999999999999999999999999999864

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.83  E-value=0.017  Score=48.83  Aligned_cols=63  Identities=16%  Similarity=0.010  Sum_probs=45.0

Q ss_pred             EEEEecCccCCCCCCC---------CCCeeeeCCCCcccccccccCCCCCCCeEEecCCCccC-chhHHHHHHHHHHHHH
Q 013303          271 VIMHCTGYKYNYPFLE---------TNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI-PFPFFELQSKWIASVL  340 (446)
Q Consensus       271 ~vi~atG~~~~~~~l~---------~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~-~~~~~~~qa~~~a~~l  340 (446)
                      .++.++|++|+.+.|.         +.|.|.+|+..+          ++.|+||++|++..++ ..+.+..+++.+|+.+
T Consensus       156 ~~~~~~G~~p~~~~l~l~~~gv~~~~~g~i~vd~~~~----------T~~~~v~A~GD~~~g~~l~~~a~~~G~~aa~~i  225 (233)
T d1v59a1         156 EVTPFVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFN----------SKFPHIKVVGDVTFGPMLAHKAEEEGIAAVEML  225 (233)
T ss_dssp             EECCCSCEEECCTTSCTTTTTCCBCTTSCBCCCTTSB----------CSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHH
T ss_pred             ccceecccccCCCCcCchhcCeEEcCCCcEEECCeEe----------cCCCCEEEEcCCcccHHHHHHHHHHHHHHHHHH
Confidence            3444899999988652         334455555544          5699999999886443 3467889999999998


Q ss_pred             cCC
Q 013303          341 SGR  343 (446)
Q Consensus       341 ~g~  343 (446)
                      .+.
T Consensus       226 ~~~  228 (233)
T d1v59a1         226 KTG  228 (233)
T ss_dssp             HHS
T ss_pred             ccC
Confidence            754

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.76  E-value=0.029  Score=44.20  Aligned_cols=33  Identities=27%  Similarity=0.361  Sum_probs=30.3

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      ++|.|||.|-.|...|+.|++.|++++++++..
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~   33 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGR   33 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTC
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCch
Confidence            479999999999999999999999999998754

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=93.73  E-value=0.018  Score=48.78  Aligned_cols=69  Identities=14%  Similarity=0.062  Sum_probs=49.8

Q ss_pred             EeecEEEEecCcc-CCCCC---------CCCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCccC-chhHHHHHHHH
Q 013303          267 VSADVIMHCTGYK-YNYPF---------LETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI-PFPFFELQSKW  335 (446)
Q Consensus       267 ~~~D~vi~atG~~-~~~~~---------l~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~-~~~~~~~qa~~  335 (446)
                      ..+|.+++++|.+ |....         +++.|.|.+|++++          |+.|+||++|++...+ ..+.+..|++.
T Consensus       147 ~~~~~~~l~~~~~~~~~~~~~~e~~g~~~d~~G~I~vd~~~~----------TsvpgVyAaGDv~~~~~l~~~A~~eG~~  216 (229)
T d1ojta1         147 VAFKNCIIAAGSRAPNGKLISAEKAGVAVTDRGFIEVDKQMR----------TNVPHIYAIGDIVGQPMLAHKAVHEGHV  216 (229)
T ss_dssp             EEEEEEEECCCEEEECGGGTTGGGTTCCCCTTSCCCCCTTSB----------CSSTTEEECGGGTCSSCCHHHHHHHHHH
T ss_pred             eecceEEEEecccCCcccccchhhhCccCCCCCCEEcCCCcc----------CCCCCEEEEEecCCCcchHHHHHHHHHH
Confidence            4466666666654 43221         35667788888777          7799999999886543 44678899999


Q ss_pred             HHHHHcCCCC
Q 013303          336 IASVLSGRIV  345 (446)
Q Consensus       336 ~a~~l~g~~~  345 (446)
                      +|.++.|...
T Consensus       217 Aa~~i~G~~~  226 (229)
T d1ojta1         217 AAENCAGHKA  226 (229)
T ss_dssp             HHHHHTTCCC
T ss_pred             HHHHHcCCCC
Confidence            9999998754

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=93.71  E-value=0.014  Score=51.28  Aligned_cols=36  Identities=22%  Similarity=0.360  Sum_probs=31.9

Q ss_pred             CCCEEEEEecCCcHHHHHHHHhc-cCCEEEEEEecCC
Q 013303          196 QDQVVILIGHYASGLDIKRDLAG-FAKEVHIASRSVA  231 (446)
Q Consensus       196 ~~k~VvVVG~G~sg~eia~~l~~-~~~~V~l~~r~~~  231 (446)
                      ....|+|||+|++|+-+|..|++ .|.+|+++.+++.
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~   68 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS   68 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence            45679999999999999999987 5999999998763

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=93.68  E-value=0.031  Score=48.86  Aligned_cols=35  Identities=26%  Similarity=0.350  Sum_probs=32.3

Q ss_pred             CCCeEEEECc-ChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            1 MFRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         1 ~~~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .+++|+|+|| |..|-..+..|.+.|++|+++.|..
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~   37 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES   37 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence            3689999998 9999999999999999999999864

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.65  E-value=0.036  Score=44.01  Aligned_cols=33  Identities=18%  Similarity=0.456  Sum_probs=29.7

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCC--cEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~--~v~v~e~~~   35 (446)
                      .+|.|||+|--|.++|..|...|+  +++++|..+
T Consensus        20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          20 CKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            479999999999999999999986  799999754

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.65  E-value=0.029  Score=43.86  Aligned_cols=33  Identities=27%  Similarity=0.412  Sum_probs=29.2

Q ss_pred             CeEEEECc-ChHHHHHHHHHHHCCC--cEEEEeeCC
Q 013303            3 RHVAVIGA-GAAGLVVGHELLREGH--TVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGa-G~aGl~aA~~l~~~g~--~v~v~e~~~   35 (446)
                      ++|+|||| |.-|.++|..|+..++  +++++|..+
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~   36 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH   36 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence            47999996 9999999999999985  899999754

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.60  E-value=0.043  Score=43.09  Aligned_cols=34  Identities=18%  Similarity=0.395  Sum_probs=29.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~   35 (446)
                      +.+|.|||+|--|.++|..|.+.++ +++++|..+
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~   37 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   37 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence            4689999999999999998888775 799999754

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=93.59  E-value=0.047  Score=42.89  Aligned_cols=33  Identities=21%  Similarity=0.217  Sum_probs=30.4

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      -+|+|+|.|..|..++..|.+.|.+|+++|..+
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            469999999999999999999999999999754

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.57  E-value=0.032  Score=43.41  Aligned_cols=33  Identities=18%  Similarity=0.294  Sum_probs=29.2

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCC--cEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~--~v~v~e~~~   35 (446)
                      ++|+|||+|--|.++|..|+..++  +++++|..+
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence            489999999999999999998875  799999754

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=93.51  E-value=0.036  Score=44.42  Aligned_cols=34  Identities=21%  Similarity=0.313  Sum_probs=30.5

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~   35 (446)
                      .++|+|||+|=++.+++..|.+.|. ++.|+.|+.
T Consensus        17 ~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          17 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence            4689999999999999999999996 799998853

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=93.45  E-value=0.018  Score=46.80  Aligned_cols=34  Identities=15%  Similarity=0.033  Sum_probs=31.9

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      |++.|||+|..|.-+|..|++.|.+|+++.|++.
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~   35 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQ   35 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            7999999999999999999999999999998754

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.33  E-value=0.02  Score=47.28  Aligned_cols=34  Identities=21%  Similarity=0.203  Sum_probs=32.1

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      |+|.|||+|..|..+|..++..|.+|+++.+++.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   38 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            7999999999999999999999999999998764

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.28  E-value=0.039  Score=42.83  Aligned_cols=33  Identities=21%  Similarity=0.470  Sum_probs=29.0

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCC--cEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGH--TVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~--~v~v~e~~~   35 (446)
                      ++|+|||+|--|.++|..|+..++  +++++|..+
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            489999999999999999998875  799999753

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.20  E-value=0.021  Score=48.00  Aligned_cols=69  Identities=19%  Similarity=0.216  Sum_probs=51.6

Q ss_pred             EEeecEEEEecCccCCCC---------C-------CCCCCeeeeCCCCcccccccccCCCCCCCeEEecCCCccC-chhH
Q 013303          266 VVSADVIMHCTGYKYNYP---------F-------LETNGIVTVDDNRVGPLYKHVFPPVLAPGLSFVGIPQKVI-PFPF  328 (446)
Q Consensus       266 ~~~~D~vi~atG~~~~~~---------~-------l~~~g~i~~~~~~~~~l~~~~~~~~~~p~l~~iG~~~~~~-~~~~  328 (446)
                      ++.++.++++||.+|..+         +       |++.|.|.+|++++          |+.|+||++|++..++ ..+.
T Consensus       140 ~~~~~~~i~atG~~~~~~~~~~~~~~~~~~~~gv~l~~~G~i~vd~~~~----------T~vpgiyA~GDv~~g~~l~~~  209 (229)
T d3lada1         140 VLDTENVILASGSKPVEIPRRPVTTDLLAADSGVTLDERGFIYVDDYCA----------TSVPGVYAIGDVVRGAMLAHK  209 (229)
T ss_dssp             EECCSCEEECCCEEECCCTEEECCTTCCSSCCSCCBCTTSCBCCCTTSB----------CSSTTEEECGGGSSSCCCHHH
T ss_pred             eeecccccccCCcccccccccccccccchHhcCeeecCCCcEEeccccc----------CCCCCEEEEeCCcchHHHHHH
Confidence            356899999999987643         2       23455666666665          6699999999886544 4566


Q ss_pred             HHHHHHHHHHHHcCCC
Q 013303          329 FELQSKWIASVLSGRI  344 (446)
Q Consensus       329 ~~~qa~~~a~~l~g~~  344 (446)
                      +..+++.+|+.++|..
T Consensus       210 A~~~G~~aa~~i~g~~  225 (229)
T d3lada1         210 ASEEGVVVAERIAGHK  225 (229)
T ss_dssp             HHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHcCCC
Confidence            7889999999998764

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=93.16  E-value=0.034  Score=45.26  Aligned_cols=33  Identities=27%  Similarity=0.296  Sum_probs=29.6

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~   35 (446)
                      .+|+|+|+|+.|+.++..+...|. +|+++|+++
T Consensus        30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~   63 (182)
T d1vj0a2          30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP   63 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred             CEEEEECCCccchhheeccccccccccccccccc
Confidence            579999999999999999999997 789999864

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=93.14  E-value=0.042  Score=48.30  Aligned_cols=35  Identities=23%  Similarity=0.304  Sum_probs=31.8

Q ss_pred             CCCeEEEECc-ChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            1 MFRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         1 ~~~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      ++++|+|+|| |..|...+.+|.+.|++|+++.|..
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   37 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE   37 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCC
Confidence            3678999998 9999999999999999999998854

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.05  E-value=0.026  Score=47.82  Aligned_cols=32  Identities=28%  Similarity=0.401  Sum_probs=29.8

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      .|+|||+|+.|+..|..+++.|.+|.++...+
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~   36 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVT   36 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECCCC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            69999999999999999999999999998654

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=93.02  E-value=0.048  Score=43.63  Aligned_cols=33  Identities=27%  Similarity=0.380  Sum_probs=29.6

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .+|+|+|+|+.|+.++..+...|.++++++..+
T Consensus        32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~   64 (168)
T d1uufa2          32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSE   64 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CEEEEeccchHHHHHHHHhhcccccchhhccch
Confidence            579999999999999999999999999998754

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=92.98  E-value=0.03  Score=44.62  Aligned_cols=33  Identities=21%  Similarity=0.055  Sum_probs=31.2

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      +|+|+|+|..|.-+|..|++.|.+|+++.|++.
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            799999999999999999999999999998765

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=92.88  E-value=0.06  Score=40.56  Aligned_cols=34  Identities=24%  Similarity=0.442  Sum_probs=30.6

Q ss_pred             CCeEEEECcCh-----------HHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGA-----------AGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~-----------aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .++|+|||+||           ++..|+++|++.|++++++..++
T Consensus         7 ~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP   51 (127)
T d1a9xa3           7 IKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNP   51 (127)
T ss_dssp             CCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCT
T ss_pred             CCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCch
Confidence            47899999995           89999999999999999998765

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=92.78  E-value=0.059  Score=42.73  Aligned_cols=33  Identities=33%  Similarity=0.513  Sum_probs=30.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG   34 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~   34 (446)
                      .++|+|||+|-.|..+|++|...|. +++|+-|+
T Consensus        24 ~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt   57 (159)
T d1gpja2          24 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT   57 (159)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             cCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence            5789999999999999999999998 58888885

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.76  E-value=0.047  Score=42.52  Aligned_cols=32  Identities=28%  Similarity=0.420  Sum_probs=28.3

Q ss_pred             eEEEECc-ChHHHHHHHHHHHCCC--cEEEEeeCC
Q 013303            4 HVAVIGA-GAAGLVVGHELLREGH--TVVVYEKGE   35 (446)
Q Consensus         4 ~V~IIGa-G~aGl~aA~~l~~~g~--~v~v~e~~~   35 (446)
                      +|+|||| |.-|.++|..|...++  +++++|...
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~   36 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc
Confidence            7999996 9999999999999886  799999753

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.65  E-value=0.06  Score=48.44  Aligned_cols=34  Identities=35%  Similarity=0.332  Sum_probs=32.0

Q ss_pred             CCCeEEEECc-ChHHHHHHHHHHHCCCcEEEEeeC
Q 013303            1 MFRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKG   34 (446)
Q Consensus         1 ~~~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~~   34 (446)
                      |.|+|+|.|| |..|-..++.|++.|++|+++|+.
T Consensus         1 M~kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~   35 (346)
T d1ek6a_           1 MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNF   35 (346)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECS
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            7899999998 999999999999999999999974

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=92.43  E-value=0.027  Score=49.90  Aligned_cols=32  Identities=13%  Similarity=0.221  Sum_probs=30.0

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      .|+|||+|.+|+-.|..|++.|.+|.++.+.+
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~   49 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEP   49 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            59999999999999999999999999998765

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=92.34  E-value=0.049  Score=43.93  Aligned_cols=33  Identities=27%  Similarity=0.287  Sum_probs=29.1

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~   35 (446)
                      ..|+|+|+|+.|+.++..++..|. +|+++|.++
T Consensus        29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~   62 (174)
T d1jqba2          29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP   62 (174)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred             CEEEEEcCCcchhhhhhhhhcccccccccccchh
Confidence            479999999999999999998996 789998754

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=92.20  E-value=0.091  Score=42.57  Aligned_cols=34  Identities=21%  Similarity=0.448  Sum_probs=30.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~   35 (446)
                      .++|+|||+|-+|-+++..|.+.|. +++|+.|+.
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~   52 (182)
T d1vi2a1          18 GKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD   52 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHHhhcCCceEeeeccch
Confidence            4789999999999999999999987 688998864

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=92.12  E-value=0.021  Score=46.82  Aligned_cols=34  Identities=12%  Similarity=0.057  Sum_probs=31.7

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      ++|.|||+|..|..+|..++..|.+|+++.+++.
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEH   38 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            6899999999999999999999999999998764

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=91.98  E-value=0.036  Score=49.54  Aligned_cols=32  Identities=19%  Similarity=0.245  Sum_probs=30.0

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      .|+|||+|.+|+-.|..|++.|.+|.++.+.+
T Consensus        25 DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~   56 (322)
T d1d4ca2          25 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEP   56 (322)
T ss_dssp             SEEEECSSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            59999999999999999999999999998754

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.96  E-value=0.06  Score=44.10  Aligned_cols=39  Identities=18%  Similarity=0.276  Sum_probs=35.2

Q ss_pred             CCCCCCEEEEEe-cCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          193 NPFQDQVVILIG-HYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       193 ~~~~~k~VvVVG-~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      .+++||+|+|.| +|-+|..+|..|++.|.+|+++.|+..
T Consensus        19 ~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~   58 (191)
T d1luaa1          19 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLD   58 (191)
T ss_dssp             SCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchH
Confidence            357899999999 689999999999999999999999864

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=91.79  E-value=0.069  Score=42.88  Aligned_cols=34  Identities=29%  Similarity=0.354  Sum_probs=30.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .++|+|+|+|-++.+++..|.+.+.+++|+.|+.
T Consensus        18 ~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~   51 (171)
T d1p77a1          18 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF   51 (171)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence            4789999999999999999998888999999863

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=91.78  E-value=0.07  Score=43.85  Aligned_cols=33  Identities=30%  Similarity=0.343  Sum_probs=28.2

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~   35 (446)
                      .+|+|+|+|+.|+.++..+...|. +|+++|..+
T Consensus        27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~   60 (195)
T d1kola2          27 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP   60 (195)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence            579999999999999999988876 688888753

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=91.67  E-value=0.083  Score=42.51  Aligned_cols=33  Identities=21%  Similarity=0.269  Sum_probs=28.4

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~   35 (446)
                      ..|+|+|+|+-|+.++..+...|. +|++.|.++
T Consensus        30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~   63 (174)
T d1e3ia2          30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDING   63 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CEEEEECCChHHHHHHHHHHHhCCceeeeeccch
Confidence            479999999999999999999998 466777754

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=91.65  E-value=0.046  Score=49.70  Aligned_cols=32  Identities=9%  Similarity=-0.017  Sum_probs=30.1

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      .|||||+|..|+-+|..|++.|.+|.++.+..
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   35 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ   35 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             eEEEeCcCHHHHHHHHHHHHCcCeEEEEecCC
Confidence            58999999999999999999999999999864

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=91.60  E-value=0.046  Score=49.55  Aligned_cols=32  Identities=22%  Similarity=0.306  Sum_probs=30.1

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      .|+|||+|..|+-+|..|++.|.+|.++.+..
T Consensus         6 DviIVGsG~aG~v~A~~La~~G~kVlvLEaG~   37 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVGAGYKVAMFDIGE   37 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cEEEECcCHHHHHHHHHHhhCCCeEEEEecCC
Confidence            69999999999999999999999999999864

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.52  E-value=0.088  Score=41.82  Aligned_cols=33  Identities=30%  Similarity=0.384  Sum_probs=29.6

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      ..|+|+|+|+.|+.++..+...|.+|++++.++
T Consensus        29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~   61 (168)
T d1rjwa2          29 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD   61 (168)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEeecccchhhhhHHHhcCCCeEeccCCCH
Confidence            579999999999999999999999999998754

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=91.07  E-value=0.047  Score=49.67  Aligned_cols=32  Identities=16%  Similarity=0.082  Sum_probs=30.0

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      .|+|||+|..|+-+|..|++.|.+|.++.+..
T Consensus         9 dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   40 (370)
T d3coxa1           9 PALVIGSGYGGAVAALRLTQAGIPTQIVEMGR   40 (370)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            59999999999999999999999999999864

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=91.01  E-value=0.033  Score=42.35  Aligned_cols=35  Identities=11%  Similarity=0.148  Sum_probs=26.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHH-CCCcEEE-EeeCCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLR-EGHTVVV-YEKGEQ   36 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~-~g~~v~v-~e~~~~   36 (446)
                      +.+|+|+|||-+|.+.+.++.+ .+++++. ||..+.
T Consensus         3 ~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~   39 (126)
T d2dt5a2           3 KWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPE   39 (126)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTT
T ss_pred             CceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchH
Confidence            4689999999999999887754 3666654 565443

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=90.90  E-value=0.096  Score=44.70  Aligned_cols=32  Identities=19%  Similarity=0.367  Sum_probs=29.5

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCC-cEEEEeeC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG   34 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~   34 (446)
                      .+|+|||+|--|..+|..|++.|. +++++|..
T Consensus        31 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          31 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            689999999999999999999998 78999864

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=90.89  E-value=0.074  Score=42.11  Aligned_cols=38  Identities=21%  Similarity=0.392  Sum_probs=32.8

Q ss_pred             CCCCCEEEEEecCCcHHHHHHHHhccCC-EEEEEEecCC
Q 013303          194 PFQDQVVILIGHYASGLDIKRDLAGFAK-EVHIASRSVA  231 (446)
Q Consensus       194 ~~~~k~VvVVG~G~sg~eia~~l~~~~~-~V~l~~r~~~  231 (446)
                      .+.+++|+|||+|..|..++..|...+. ++++..|+..
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~   59 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYE   59 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHH
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHH
Confidence            4578999999999999999999998875 6888888743

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=90.85  E-value=0.049  Score=48.51  Aligned_cols=33  Identities=12%  Similarity=0.242  Sum_probs=30.3

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      -.|+|||+|.+|+-.|..+++.|.+|.++.+.+
T Consensus        20 ~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~   52 (317)
T d1qo8a2          20 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAP   52 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            369999999999999999999999999998754

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=90.79  E-value=0.11  Score=40.61  Aligned_cols=33  Identities=21%  Similarity=0.455  Sum_probs=29.5

Q ss_pred             CeEEEECcChHHHHHHHHHHHCC-CcEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREG-HTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g-~~v~v~e~~~   35 (446)
                      ++|.+||+|--|.+.|+.|.+.| .++.+++++.
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~   34 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence            47999999999999999998887 8999999864

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=90.73  E-value=0.11  Score=41.72  Aligned_cols=33  Identities=21%  Similarity=0.296  Sum_probs=29.5

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~   35 (446)
                      ..|+|+|+|+.|+.++..++..|. +|+++|.++
T Consensus        31 ~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~   64 (176)
T d1d1ta2          31 STCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNK   64 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceEEEecCcH
Confidence            469999999999999999999995 799999864

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=90.72  E-value=0.056  Score=48.34  Aligned_cols=31  Identities=16%  Similarity=0.038  Sum_probs=28.9

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRS  229 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~  229 (446)
                      .|+|||+|.+|+-.|..+++.|.+|.++...
T Consensus         7 DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~   37 (336)
T d2bs2a2           7 DSLVIGGGLAGLRAAVATQQKGLSTIVLSLI   37 (336)
T ss_dssp             SEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEecC
Confidence            4999999999999999999999999999864

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=90.72  E-value=0.13  Score=39.63  Aligned_cols=31  Identities=29%  Similarity=0.459  Sum_probs=27.7

Q ss_pred             CeEEEEC-cChHHHHHHHHHHHCCC--cEEEEee
Q 013303            3 RHVAVIG-AGAAGLVVGHELLREGH--TVVVYEK   33 (446)
Q Consensus         3 ~~V~IIG-aG~aGl~aA~~l~~~g~--~v~v~e~   33 (446)
                      .+|+||| +|.-|.++|..|...++  +++++|.
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di   34 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence            3799999 69999999999999986  7899985

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=90.71  E-value=0.046  Score=41.84  Aligned_cols=34  Identities=21%  Similarity=0.190  Sum_probs=31.1

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      |+++|+|.|..|..+|..|.+.|.+|+++..++.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~   34 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEE   34 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHH
Confidence            6799999999999999999999999999987653

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.65  E-value=0.12  Score=45.71  Aligned_cols=32  Identities=25%  Similarity=0.525  Sum_probs=30.2

Q ss_pred             CCeEEEECc-ChHHHHHHHHHHHCCCcEEEEee
Q 013303            2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEK   33 (446)
Q Consensus         2 ~~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~   33 (446)
                      +|+|+|.|| |..|...+.+|++.|++|+.+++
T Consensus         1 kKKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~   33 (312)
T d2b69a1           1 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDN   33 (312)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence            589999999 99999999999999999999986

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.62  E-value=0.14  Score=46.31  Aligned_cols=34  Identities=24%  Similarity=0.357  Sum_probs=30.9

Q ss_pred             CCeEEEECc-ChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .++|+|.|| |.-|..++..|.++|++|+++++..
T Consensus        15 nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~   49 (363)
T d2c5aa1          15 NLKISITGAGGFIASHIARRLKHEGHYVIASDWKK   49 (363)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence            578999997 9999999999999999999998753

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.62  E-value=0.096  Score=42.22  Aligned_cols=32  Identities=22%  Similarity=0.501  Sum_probs=28.3

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG   34 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~   34 (446)
                      .++|+|||+|-++-+++..|.+.| +|.|+.|+
T Consensus        18 ~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~   49 (177)
T d1nvta1          18 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRT   49 (177)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHHcccc-ceeeehhh
Confidence            478999999999999999997776 89999885

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.60  E-value=0.076  Score=40.47  Aligned_cols=33  Identities=12%  Similarity=0.239  Sum_probs=30.5

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      +|+|+|+|..|..+|..|.+.|.+|+++..++.
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~   34 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKD   34 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCChh
Confidence            699999999999999999999999999988653

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=90.60  E-value=0.1  Score=40.89  Aligned_cols=33  Identities=15%  Similarity=0.298  Sum_probs=30.1

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      ++|.|||+|--|.+.|..|.+.|.++++.+++.
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~   33 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSL   33 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence            479999999999999999999999999998853

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.53  E-value=0.042  Score=48.87  Aligned_cols=37  Identities=35%  Similarity=0.343  Sum_probs=31.9

Q ss_pred             CCCCEEEEEecCCcHHHHHHHHhcc--CCEEEEEEecCC
Q 013303          195 FQDQVVILIGHYASGLDIKRDLAGF--AKEVHIASRSVA  231 (446)
Q Consensus       195 ~~~k~VvVVG~G~sg~eia~~l~~~--~~~V~l~~r~~~  231 (446)
                      ..++.|+|||+|++|+..|..|++.  +.+|+++.+.+.
T Consensus        48 ~~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~   86 (311)
T d2gjca1          48 FAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA   86 (311)
T ss_dssp             TTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS
T ss_pred             ccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCC
Confidence            3457799999999999999999954  889999998764

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=90.40  E-value=0.067  Score=47.95  Aligned_cols=33  Identities=24%  Similarity=0.298  Sum_probs=29.5

Q ss_pred             EEEEEecCCcHHHHHHHHh-----ccCCEEEEEEecCC
Q 013303          199 VVILIGHYASGLDIKRDLA-----GFAKEVHIASRSVA  231 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~-----~~~~~V~l~~r~~~  231 (446)
                      .|+|||||++|+-+|..|+     +.|.+|+++.+.+.
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~   46 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST   46 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence            6999999999999999996     56889999998764

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=90.33  E-value=0.15  Score=45.65  Aligned_cols=34  Identities=26%  Similarity=0.311  Sum_probs=31.4

Q ss_pred             CCCeEEEECc-ChHHHHHHHHHHHCCCcEEEEeeC
Q 013303            1 MFRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKG   34 (446)
Q Consensus         1 ~~~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~~   34 (446)
                      ++|.|+|+|| |..|-..++.|++.|++|+++-|+
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~   36 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHS   36 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECC
Confidence            4689999998 999999999999999999999875

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=90.31  E-value=0.098  Score=41.72  Aligned_cols=36  Identities=17%  Similarity=0.232  Sum_probs=31.7

Q ss_pred             CCCEEEEEecCCcHHHHHHHHhccC-CEEEEEEecCC
Q 013303          196 QDQVVILIGHYASGLDIKRDLAGFA-KEVHIASRSVA  231 (446)
Q Consensus       196 ~~k~VvVVG~G~sg~eia~~l~~~~-~~V~l~~r~~~  231 (446)
                      ++++|+|+|+|-+|--++..|.+.+ ++|+++.|+..
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~   52 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVK   52 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHH
Confidence            5789999999999999999999988 47999888754

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.27  E-value=0.13  Score=40.52  Aligned_cols=34  Identities=24%  Similarity=0.230  Sum_probs=31.7

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .|.|+|||-|..|-.+|..|+..|.+|++.|..+
T Consensus        24 Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          24 GKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            4789999999999999999999999999999854

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=90.15  E-value=0.17  Score=41.19  Aligned_cols=34  Identities=24%  Similarity=0.325  Sum_probs=30.9

Q ss_pred             CCeEEEECc-ChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .|+|+|.|| |-.|..+|+.|++.|.+|++++|+.
T Consensus        23 gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          23 GKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            478999995 8999999999999999999999964

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=89.95  E-value=0.14  Score=42.81  Aligned_cols=34  Identities=24%  Similarity=0.543  Sum_probs=30.6

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .|+|+|||+|.+|+-+|..|++.+.+++++=+..
T Consensus        32 gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          32 GQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            4899999999999999999999999888887754

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=89.85  E-value=0.16  Score=45.44  Aligned_cols=34  Identities=29%  Similarity=0.188  Sum_probs=31.4

Q ss_pred             CCeEEEECc-ChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .|+|+|.|| |..|..++..|.+.|++|..+++..
T Consensus         8 ~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~   42 (356)
T d1rkxa_           8 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTA   42 (356)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            589999996 9999999999999999999999854

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=89.81  E-value=0.13  Score=41.23  Aligned_cols=33  Identities=18%  Similarity=0.220  Sum_probs=28.6

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~   35 (446)
                      ..|+|+|+|+.|+.++..+...|. +|+++|.++
T Consensus        29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~   62 (174)
T d1p0fa2          29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHK   62 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceeeccCChH
Confidence            469999999999999999999996 688888754

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.77  E-value=0.07  Score=48.89  Aligned_cols=33  Identities=18%  Similarity=0.281  Sum_probs=29.7

Q ss_pred             EEEEEecCCcHHHHHHHHhc------cCCEEEEEEecCC
Q 013303          199 VVILIGHYASGLDIKRDLAG------FAKEVHIASRSVA  231 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~------~~~~V~l~~r~~~  231 (446)
                      .|+|||||++|.-.|..|++      .|.+|.++.+...
T Consensus        34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~   72 (380)
T d2gmha1          34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH   72 (380)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCC
Confidence            69999999999999999986      6889999998753

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=89.51  E-value=0.076  Score=43.41  Aligned_cols=34  Identities=18%  Similarity=0.159  Sum_probs=31.0

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      ++|+|+|+|..|.=+|..|++.+.+|++..|++.
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~   41 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEE   41 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHH
Confidence            5799999999999999999999999999988653

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=89.28  E-value=0.17  Score=45.20  Aligned_cols=32  Identities=31%  Similarity=0.485  Sum_probs=29.4

Q ss_pred             CeEEEECc-ChHHHHHHHHHHHCCCcEEEEeeC
Q 013303            3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKG   34 (446)
Q Consensus         3 ~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~~   34 (446)
                      ++|+|+|| |..|-..++.|++.|++|+++++-
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~   33 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNL   33 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            35999999 999999999999999999999863

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=89.17  E-value=0.17  Score=40.41  Aligned_cols=31  Identities=23%  Similarity=0.295  Sum_probs=26.0

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEE-Eee
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVV-YEK   33 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v-~e~   33 (446)
                      .+|+|+|+|+.|+.++..+...|.++++ .+.
T Consensus        30 ~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~   61 (174)
T d1f8fa2          30 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDI   61 (174)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCSEEEEEES
T ss_pred             CEEEEeCCCHHHhhhhhcccccccceeeeecc
Confidence            4799999999999999999888886654 454

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=88.93  E-value=0.18  Score=43.15  Aligned_cols=38  Identities=21%  Similarity=0.311  Sum_probs=33.5

Q ss_pred             CCCCCEEEEEecC-CcHHHHHHHHhccCCEEEEEEecCC
Q 013303          194 PFQDQVVILIGHY-ASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       194 ~~~~k~VvVVG~G-~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      +++||.|+|.|++ -+|.++|.+|++.|.+|.++.|+..
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~   40 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVE   40 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSC
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            4789999999976 4899999999999999999988765

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.76  E-value=0.022  Score=48.36  Aligned_cols=31  Identities=19%  Similarity=0.214  Sum_probs=26.1

Q ss_pred             EEEEEecCCcHHHHHHHHhccCC------EEEEEEec
Q 013303          199 VVILIGHYASGLDIKRDLAGFAK------EVHIASRS  229 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~------~V~l~~r~  229 (446)
                      +|+|||+|.+|+-+|..|++.|.      +++++.+.
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~~   38 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADR   38 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESC
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEeeeeecccC
Confidence            79999999999999999999875      46666544

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=88.75  E-value=0.21  Score=40.33  Aligned_cols=38  Identities=16%  Similarity=0.165  Sum_probs=32.6

Q ss_pred             CCCCCEEEEEecCCcHHHHHHHHhccCC-EEEEEEecCC
Q 013303          194 PFQDQVVILIGHYASGLDIKRDLAGFAK-EVHIASRSVA  231 (446)
Q Consensus       194 ~~~~k~VvVVG~G~sg~eia~~l~~~~~-~V~l~~r~~~  231 (446)
                      +.++|+|+|+|+|-+|--++..|...+. +++++.|++.
T Consensus        15 ~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~   53 (182)
T d1vi2a1          15 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE   53 (182)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchH
Confidence            4678999999999999999999988764 7999998764

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.68  E-value=0.14  Score=40.43  Aligned_cols=38  Identities=21%  Similarity=0.265  Sum_probs=34.7

Q ss_pred             CCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       194 ~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      .+.||+|+|+|-|..|--+|..+...|.+|++....|.
T Consensus        21 ~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~   58 (163)
T d1li4a1          21 MIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPI   58 (163)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             eecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccc
Confidence            46799999999999999999999999999999987663

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=88.63  E-value=0.22  Score=38.52  Aligned_cols=33  Identities=27%  Similarity=0.374  Sum_probs=26.5

Q ss_pred             CeEEEEC-cChHHHHHHHHHHH-CC--CcEEEEeeCC
Q 013303            3 RHVAVIG-AGAAGLVVGHELLR-EG--HTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIG-aG~aGl~aA~~l~~-~g--~~v~v~e~~~   35 (446)
                      ++|+||| +|.-|.++|..|.. .+  .++.++|..+
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~   37 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP   37 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc
Confidence            4899999 59999999998864 34  5899999643

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=88.61  E-value=0.28  Score=39.50  Aligned_cols=34  Identities=32%  Similarity=0.392  Sum_probs=31.4

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .++|.|||.|..|-..|+.|...|.+|..+++..
T Consensus        42 gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~   75 (181)
T d1qp8a1          42 GEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP   75 (181)
T ss_dssp             TCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CceEEEeccccccccceeeeeccccccccccccc
Confidence            4789999999999999999999999999999864

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=88.55  E-value=0.11  Score=47.16  Aligned_cols=33  Identities=21%  Similarity=0.249  Sum_probs=30.6

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      .++|||+|.+|+=+|..|++.+.+|.++.+.+.
T Consensus         4 D~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~~   36 (360)
T d1kdga1           4 DYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP   36 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CEEEECcCHHHHHHHHHHhhCCCeEEEEEccCC
Confidence            589999999999999999999999999998864

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.45  E-value=0.23  Score=43.57  Aligned_cols=44  Identities=34%  Similarity=0.480  Sum_probs=37.7

Q ss_pred             ecCCCCCCCCCEEEEEecC-CcHHHHHHHHhccCCEEEEEEecCC
Q 013303          188 NYRIPNPFQDQVVILIGHY-ASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       188 ~~~~~~~~~~k~VvVVG~G-~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      +|..|..++||.++|.|++ -+|..+|..|++.|.+|.+..|+..
T Consensus         3 ~y~~~g~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~   47 (297)
T d1yxma1           3 SYLAPGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLE   47 (297)
T ss_dssp             CSBCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4667777899999999865 4889999999999999999998754

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=88.39  E-value=0.15  Score=46.81  Aligned_cols=42  Identities=17%  Similarity=0.218  Sum_probs=34.7

Q ss_pred             CCCCCCCCC--EEEEEecCCcHHHHHHHHhccC-CEEEEEEecCC
Q 013303          190 RIPNPFQDQ--VVILIGHYASGLDIKRDLAGFA-KEVHIASRSVA  231 (446)
Q Consensus       190 ~~~~~~~~k--~VvVVG~G~sg~eia~~l~~~~-~~V~l~~r~~~  231 (446)
                      .+|++..++  .++|||+|.+|+-+|..|++.+ .+|.++.+.+.
T Consensus        15 ~~p~~~~~~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~   59 (391)
T d1gpea1          15 SDPSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY   59 (391)
T ss_dssp             CCGGGTTTCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             CCcccccCCeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence            345555565  5999999999999999999988 48999998863

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=88.09  E-value=0.24  Score=39.46  Aligned_cols=33  Identities=24%  Similarity=0.344  Sum_probs=28.0

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~   35 (446)
                      ..|+|+|+|+.|+.++..++..|. +|+++++.+
T Consensus        30 ~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~   63 (175)
T d1cdoa2          30 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNP   63 (175)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CEEEEEecCCccchHHHHHHHHhhchheeecchH
Confidence            469999999999999999999876 577788754

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=88.02  E-value=0.075  Score=47.55  Aligned_cols=32  Identities=13%  Similarity=0.240  Sum_probs=29.5

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      .|+|||+|..|+-.|.++++.|.+|.++.+.+
T Consensus         9 DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~   40 (330)
T d1neka2           9 DAVVIGAGGAGMRAALQISQSGQTCALLSKVF   40 (330)
T ss_dssp             SCEEECCSHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence            59999999999999999999999999998754

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=87.91  E-value=0.19  Score=43.07  Aligned_cols=38  Identities=29%  Similarity=0.448  Sum_probs=33.5

Q ss_pred             CCCCCEEEEEecCC-cHHHHHHHHhccCCEEEEEEecCC
Q 013303          194 PFQDQVVILIGHYA-SGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       194 ~~~~k~VvVVG~G~-sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      +|+||.++|.|++. +|..+|..|++.|.+|.+..|+..
T Consensus         6 ~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   44 (260)
T d1h5qa_           6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAA   44 (260)
T ss_dssp             CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCT
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            47899999998764 899999999999999999999765

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=87.72  E-value=0.22  Score=39.04  Aligned_cols=34  Identities=21%  Similarity=0.202  Sum_probs=31.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .|.|+|+|=|.-|-.+|..|+..|.+|+|.|..+
T Consensus        23 Gk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP   56 (163)
T d1v8ba1          23 GKIVVICGYGDVGKGCASSMKGLGARVYITEIDP   56 (163)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CCEEEEecccccchhHHHHHHhCCCEEEEEecCc
Confidence            4799999999999999999999999999999864

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.64  E-value=0.77  Score=38.47  Aligned_cols=34  Identities=35%  Similarity=0.611  Sum_probs=29.0

Q ss_pred             CCeEEEECcC-hHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAG-AAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG-~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .|.++|.||+ =-|.++|+.|++.|.+|++.+++.
T Consensus         7 gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~   41 (237)
T d1uzma1           7 SRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGS   41 (237)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            4678888885 478999999999999999999864

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.62  E-value=0.15  Score=41.10  Aligned_cols=33  Identities=27%  Similarity=0.338  Sum_probs=30.0

Q ss_pred             EEEEE-ecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          199 VVILI-GHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       199 ~VvVV-G~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      +|.|| |+|..|.-+|..|++.|.+|++..|++.
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e   35 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREE   35 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            68899 6799999999999999999999998764

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=87.62  E-value=0.28  Score=42.69  Aligned_cols=40  Identities=18%  Similarity=0.295  Sum_probs=34.5

Q ss_pred             CCCCCCCEEEEEecC---CcHHHHHHHHhccCCEEEEEEecCC
Q 013303          192 PNPFQDQVVILIGHY---ASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       192 ~~~~~~k~VvVVG~G---~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      +-+++||+++|.|++   -+|..+|..|++.|.+|.+..|.+.
T Consensus         3 ~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~   45 (297)
T d1d7oa_           3 PIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPA   45 (297)
T ss_dssp             CCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHH
T ss_pred             CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchh
Confidence            346789999999976   5899999999999999999988653

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.51  E-value=0.61  Score=35.81  Aligned_cols=43  Identities=26%  Similarity=0.306  Sum_probs=33.8

Q ss_pred             CCCeEEEECc-ChHHHHHHHHHHHCC---CcEEEEeeCCCcCceeee
Q 013303            1 MFRHVAVIGA-GAAGLVVGHELLREG---HTVVVYEKGEQVGGSWIY   43 (446)
Q Consensus         1 ~~~~V~IIGa-G~aGl~aA~~l~~~g---~~v~v~e~~~~~GG~w~~   43 (446)
                      ++.+|+|||| |..|....+-|.+++   .++..+-.+...|-....
T Consensus         1 q~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~   47 (144)
T d2hjsa1           1 QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGF   47 (144)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceee
Confidence            4679999999 999999999998654   478888766666655544

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=87.47  E-value=0.29  Score=40.62  Aligned_cols=33  Identities=36%  Similarity=0.375  Sum_probs=28.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCC-cEEEEeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG   34 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~   34 (446)
                      ..+|+|.|||.||+..|..|.+.+. ++.++|+.
T Consensus        26 d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~   59 (222)
T d1vl6a1          26 EVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK   59 (222)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             hcEEEEEChHHHHHHHHHHHHHhcccceEeecce
Confidence            3689999999999999999998886 68888875

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=87.31  E-value=0.17  Score=45.41  Aligned_cols=37  Identities=19%  Similarity=0.071  Sum_probs=33.7

Q ss_pred             CCCCEEEEEe-cCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          195 FQDQVVILIG-HYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       195 ~~~k~VvVVG-~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      |++|+|+|.| +|..|..++..|.+.|.+|+.+.|...
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   43 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            6899999999 689999999999999999999998764

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=87.19  E-value=0.16  Score=43.67  Aligned_cols=33  Identities=18%  Similarity=0.308  Sum_probs=30.2

Q ss_pred             CeEEEECc-ChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      ++|+|.|| |..|-..+..|.+.|++|+.+++..
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            46999998 9999999999999999999998854

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.10  E-value=0.3  Score=40.55  Aligned_cols=34  Identities=32%  Similarity=0.386  Sum_probs=28.4

Q ss_pred             CCeEEEECcChHHHHHHHHHH--------------------HCCC-cEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELL--------------------REGH-TVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~--------------------~~g~-~v~v~e~~~   35 (446)
                      .++|+|||+|-.++=+|+.|+                    +.|. +|.++-|..
T Consensus        39 gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg   93 (216)
T d1lqta1          39 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG   93 (216)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred             CceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECC
Confidence            478999999999999999887                    4565 689998764

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.10  E-value=0.25  Score=40.98  Aligned_cols=31  Identities=29%  Similarity=0.365  Sum_probs=27.5

Q ss_pred             CCeEEEECc-ChHHHHHHHHHHHCCCcEEEEe
Q 013303            2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYE   32 (446)
Q Consensus         2 ~~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e   32 (446)
                      +++|+|.|| |..|..+++.|++.|+++.+++
T Consensus         3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~   34 (252)
T d2q46a1           3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKG   34 (252)
T ss_dssp             CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEE
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCcEEEEE
Confidence            689999996 9999999999999998876655

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=87.05  E-value=0.24  Score=44.29  Aligned_cols=33  Identities=27%  Similarity=0.417  Sum_probs=28.0

Q ss_pred             CCCeEEEECc-ChHHHHHHHHHHHCCCcE--EEEee
Q 013303            1 MFRHVAVIGA-GAAGLVVGHELLREGHTV--VVYEK   33 (446)
Q Consensus         1 ~~~~V~IIGa-G~aGl~aA~~l~~~g~~v--~v~e~   33 (446)
                      ++|+|+|.|| |..|-..+..|.+.|.+|  +++|+
T Consensus         1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~   36 (346)
T d1oc2a_           1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDK   36 (346)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred             CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeC
Confidence            5799999996 999999999999998764  55554

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.89  E-value=0.33  Score=42.63  Aligned_cols=33  Identities=27%  Similarity=0.320  Sum_probs=30.7

Q ss_pred             CeEEEECc-ChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      |+|+|.|| |..|-.++..|++.|++|..+++..
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~   34 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARR   34 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            68999999 9999999999999999999999864

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.80  E-value=0.31  Score=43.11  Aligned_cols=34  Identities=21%  Similarity=0.208  Sum_probs=31.1

Q ss_pred             CCeEEEECc-ChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      +|.++|.|| |..|...+..|.+.|++|+.+++..
T Consensus         1 ~k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~   35 (339)
T d1n7ha_           1 RKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRS   35 (339)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCC
Confidence            478899998 9999999999999999999999853

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=86.79  E-value=0.2  Score=45.66  Aligned_cols=41  Identities=17%  Similarity=0.165  Sum_probs=33.7

Q ss_pred             CCCCCCCCC--EEEEEecCCcHHHHHHHHhccC-CEEEEEEecC
Q 013303          190 RIPNPFQDQ--VVILIGHYASGLDIKRDLAGFA-KEVHIASRSV  230 (446)
Q Consensus       190 ~~~~~~~~k--~VvVVG~G~sg~eia~~l~~~~-~~V~l~~r~~  230 (446)
                      .++++..++  .++|||+|.+|+=+|..|++.+ .+|-++.+.+
T Consensus         8 ~~p~~~~~~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~   51 (385)
T d1cf3a1           8 TDPKDVSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   51 (385)
T ss_dssp             CCGGGTTTCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSC
T ss_pred             CCcccccCCeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence            345555555  6899999999999999999876 5899999875

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=86.65  E-value=0.31  Score=41.56  Aligned_cols=38  Identities=16%  Similarity=0.273  Sum_probs=32.3

Q ss_pred             CCCCCEEEEEecC---CcHHHHHHHHhccCCEEEEEEecCC
Q 013303          194 PFQDQVVILIGHY---ASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       194 ~~~~k~VvVVG~G---~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      +++||.++|.|++   -+|..+|..|++.|.+|.+..|+..
T Consensus         5 ~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~   45 (256)
T d1ulua_           5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER   45 (256)
T ss_dssp             CCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHH
Confidence            4689999999975   4899999999999999988877643

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=86.53  E-value=0.31  Score=39.24  Aligned_cols=36  Identities=25%  Similarity=0.282  Sum_probs=33.0

Q ss_pred             CCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       195 ~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      ..||+|.|||.|.+|..+|..+...|.+|+...+.+
T Consensus        40 l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~   75 (181)
T d1qp8a1          40 IQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP   75 (181)
T ss_dssp             CTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             ccCceEEEeccccccccceeeeeccccccccccccc
Confidence            678999999999999999999999999999887654

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.53  E-value=0.34  Score=43.06  Aligned_cols=33  Identities=21%  Similarity=0.173  Sum_probs=30.5

Q ss_pred             CCeEEEECc-ChHHHHHHHHHHHCCCcEEEEeeC
Q 013303            2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKG   34 (446)
Q Consensus         2 ~~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~~   34 (446)
                      +|.|+|.|| |..|-..+.+|.+.|++|+.+|+.
T Consensus        16 ~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~   49 (341)
T d1sb8a_          16 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNF   49 (341)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            578999998 999999999999999999999973

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.50  E-value=0.5  Score=37.44  Aligned_cols=38  Identities=18%  Similarity=0.096  Sum_probs=32.8

Q ss_pred             CCCCCCEEEEEecC-CcHHHHHHHHhccCCEEEEEEecC
Q 013303          193 NPFQDQVVILIGHY-ASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       193 ~~~~~k~VvVVG~G-~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      .+.+||+|+|||.+ ..|.-+|..|++.+..|++++...
T Consensus        25 ~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~   63 (171)
T d1edza1          25 NRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNN   63 (171)
T ss_dssp             CTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSE
T ss_pred             CCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEecccc
Confidence            46789999999966 569999999999999999887654

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=86.41  E-value=0.32  Score=41.12  Aligned_cols=38  Identities=11%  Similarity=0.104  Sum_probs=33.7

Q ss_pred             CCCCCEEEEEecCC-cHHHHHHHHhccCCEEEEEEecCC
Q 013303          194 PFQDQVVILIGHYA-SGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       194 ~~~~k~VvVVG~G~-sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      .++||.++|.|++. +|..+|..|++.|.+|++..|+..
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~   40 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREER   40 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            36899999999775 999999999999999999998764

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=86.33  E-value=0.48  Score=37.27  Aligned_cols=37  Identities=14%  Similarity=0.079  Sum_probs=32.5

Q ss_pred             CCCCCEEEEEecCC-cHHHHHHHHhccCCEEEEEEecC
Q 013303          194 PFQDQVVILIGHYA-SGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       194 ~~~~k~VvVVG~G~-sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      .+.||+|+|||.+. .|.-+|..|.+.+..|++++...
T Consensus        34 ~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t   71 (166)
T d1b0aa1          34 DTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT   71 (166)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC
T ss_pred             ccccceEEEEeccccccHHHHHHHHHhhcccccccccc
Confidence            46899999999775 99999999999999999887654

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.12  E-value=0.19  Score=40.45  Aligned_cols=33  Identities=24%  Similarity=0.286  Sum_probs=30.2

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      +|.|||+|..|.-+|..|++.+.+|++..|...
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~   34 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFD   34 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCGGG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEeccc
Confidence            689999999999999999999999999988543

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=86.06  E-value=0.25  Score=33.57  Aligned_cols=34  Identities=12%  Similarity=0.098  Sum_probs=30.8

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      |+|.|+|+|.-|.-++....+.|-+|+++...+.
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            6899999999999999999999999999886554

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=85.91  E-value=0.22  Score=39.02  Aligned_cols=38  Identities=16%  Similarity=0.241  Sum_probs=34.9

Q ss_pred             CCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       194 ~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      .+.||+|+|+|-|..|--+|..+...|.+|++....|.
T Consensus        20 ~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi   57 (163)
T d1v8ba1          20 LISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPI   57 (163)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred             eecCCEEEEecccccchhHHHHHHhCCCEEEEEecCch
Confidence            36799999999999999999999999999999988764

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.90  E-value=0.42  Score=40.44  Aligned_cols=39  Identities=10%  Similarity=0.137  Sum_probs=33.7

Q ss_pred             CCCCCCEEEEEecCC-cHHHHHHHHhccCCEEEEEEecCC
Q 013303          193 NPFQDQVVILIGHYA-SGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       193 ~~~~~k~VvVVG~G~-sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      +...||.++|.|++. +|.++|..|++.|.+|.+..|+..
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~   42 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKH   42 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            346899999988765 999999999999999999998754

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=85.72  E-value=0.23  Score=37.35  Aligned_cols=32  Identities=34%  Similarity=0.440  Sum_probs=27.2

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCCcEEEEeeCCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGHTVVVYEKGEQ   36 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~~   36 (446)
                      |.|+|+|.|..|..+++.|.  +.+++++|..+.
T Consensus         1 kHivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~   32 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELR--GSEVFVLAEDEN   32 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSC--GGGEEEEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHc--CCCCEEEEcchH
Confidence            57999999999999999984  567888888654

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.68  E-value=0.39  Score=40.60  Aligned_cols=38  Identities=18%  Similarity=0.231  Sum_probs=32.9

Q ss_pred             CCCCCEEEEEecC-CcHHHHHHHHhccCCEEEEEEecCC
Q 013303          194 PFQDQVVILIGHY-ASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       194 ~~~~k~VvVVG~G-~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      +|+||+++|.|++ -+|..+|..|++.|.+|.+..|+..
T Consensus         2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNS   40 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4789999999865 5888999999999999999998754

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=85.59  E-value=0.35  Score=38.11  Aligned_cols=36  Identities=19%  Similarity=0.325  Sum_probs=32.6

Q ss_pred             CCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       196 ~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      ++.+|+|+|+|..|...+....+.|.+|+++..+..
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~   66 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVE   66 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHH
Confidence            457999999999999999999999999999987654

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=85.56  E-value=0.39  Score=40.95  Aligned_cols=38  Identities=18%  Similarity=0.215  Sum_probs=33.1

Q ss_pred             CCCCCEEEEEecC-CcHHHHHHHHhccCCEEEEEEecCC
Q 013303          194 PFQDQVVILIGHY-ASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       194 ~~~~k~VvVVG~G-~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      +++||.++|.|++ -+|..+|..|++.|.+|.+..|+..
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDE   40 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4789999999876 4888999999999999999998754

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=85.49  E-value=0.42  Score=41.01  Aligned_cols=37  Identities=5%  Similarity=0.086  Sum_probs=32.5

Q ss_pred             CCCCEEEEEecC---CcHHHHHHHHhccCCEEEEEEecCC
Q 013303          195 FQDQVVILIGHY---ASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       195 ~~~k~VvVVG~G---~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      ++||+++|.|++   -+|..+|..|++.|.+|++..|+..
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~   42 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   42 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            579999999963   4899999999999999999998754

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.44  E-value=0.48  Score=37.47  Aligned_cols=38  Identities=16%  Similarity=0.204  Sum_probs=33.6

Q ss_pred             CCCCCEEEEEecC-CcHHHHHHHHhccCCEEEEEEecCC
Q 013303          194 PFQDQVVILIGHY-ASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       194 ~~~~k~VvVVG~G-~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      ++.||+|+|||.+ ..|.-+|..|++.+..|++++....
T Consensus        36 ~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~   74 (170)
T d1a4ia1          36 PIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTA   74 (170)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS
T ss_pred             ccccceEEEEecCCccchHHHHHHHhccCceEEEecccc
Confidence            5789999999976 5999999999999999999987654

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.37  E-value=0.37  Score=43.76  Aligned_cols=30  Identities=27%  Similarity=0.440  Sum_probs=28.8

Q ss_pred             CeEEEECc-ChHHHHHHHHHHHCCCcEEEEe
Q 013303            3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYE   32 (446)
Q Consensus         3 ~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e   32 (446)
                      ++|+|.|| |.-|..+++.|++.|++|+++|
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            68999999 9999999999999999999998

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=85.36  E-value=0.39  Score=34.11  Aligned_cols=34  Identities=26%  Similarity=0.440  Sum_probs=30.5

Q ss_pred             CCeEEEECcChHHHHH-HHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVV-GHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~a-A~~l~~~g~~v~v~e~~~   35 (446)
                      .++|-+||-|=+|+++ |+.|.+.|++|+--|...
T Consensus         8 ~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~   42 (96)
T d1p3da1           8 VQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD   42 (96)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred             CCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            5789999999999998 889999999999999864

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=85.28  E-value=0.41  Score=38.06  Aligned_cols=33  Identities=24%  Similarity=0.312  Sum_probs=28.4

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~~   35 (446)
                      ..|+|+|+|..|+.++..++..|. +|++++.++
T Consensus        30 dtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~   63 (176)
T d2jhfa2          30 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDINK   63 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CEEEEECCCCcHHHHHHHHHHcCCceEEeecCcH
Confidence            469999999999999999999985 788888754

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.28  E-value=0.37  Score=40.57  Aligned_cols=38  Identities=29%  Similarity=0.479  Sum_probs=33.7

Q ss_pred             CCCCCEEEEEecC-CcHHHHHHHHhccCCEEEEEEecCC
Q 013303          194 PFQDQVVILIGHY-ASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       194 ~~~~k~VvVVG~G-~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      .|+||+++|.|++ -+|..+|..|++.|.+|.+..|+..
T Consensus         4 sl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~   42 (237)
T d1uzma1           4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSG   42 (237)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            5789999999876 4999999999999999999998764

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=85.13  E-value=0.36  Score=41.07  Aligned_cols=37  Identities=8%  Similarity=0.152  Sum_probs=32.3

Q ss_pred             CCCCEEEEEecCC---cHHHHHHHHhccCCEEEEEEecCC
Q 013303          195 FQDQVVILIGHYA---SGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       195 ~~~k~VvVVG~G~---sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      ++||+|+|.|++-   .|..+|..|++.|.+|++..|+..
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~   42 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK   42 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            6799999998764   788999999999999999998754

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=85.11  E-value=0.57  Score=38.21  Aligned_cols=34  Identities=26%  Similarity=0.347  Sum_probs=31.1

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .++|.|||.|-.|..+|+.|..-|.+|..+++..
T Consensus        45 ~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~   78 (199)
T d1dxya1          45 QQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYP   78 (199)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             ceeeeeeecccccccccccccccceeeeccCCcc
Confidence            3689999999999999999999999999999854

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=85.03  E-value=0.36  Score=41.27  Aligned_cols=37  Identities=8%  Similarity=0.109  Sum_probs=31.6

Q ss_pred             CCCCEEEEEec-CC--cHHHHHHHHhccCCEEEEEEecCC
Q 013303          195 FQDQVVILIGH-YA--SGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       195 ~~~k~VvVVG~-G~--sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      ++||+++|.|+ |.  +|..+|..|++.|.+|.+..|+..
T Consensus         4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~   43 (268)
T d2h7ma1           4 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRL   43 (268)
T ss_dssp             TTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChH
Confidence            57899999995 44  789999999999999999887654

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.79  E-value=0.27  Score=42.36  Aligned_cols=39  Identities=26%  Similarity=0.343  Sum_probs=33.6

Q ss_pred             CCCCCCEEEEEecCC-cHHHHHHHHhccCCEEEEEEecCC
Q 013303          193 NPFQDQVVILIGHYA-SGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       193 ~~~~~k~VvVVG~G~-sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      ..++||+++|.|++. .|..+|..|++.|.+|.++.|+..
T Consensus        10 ~~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~   49 (269)
T d1xu9a_          10 EMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKE   49 (269)
T ss_dssp             GGGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            346899999998764 899999999999999999999754

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=84.75  E-value=0.4  Score=38.96  Aligned_cols=38  Identities=13%  Similarity=0.134  Sum_probs=33.6

Q ss_pred             CCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          193 NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       193 ~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      .+..|++|.|||.|.+|..+|..+...|.+|....+..
T Consensus        45 ~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~   82 (193)
T d1mx3a1          45 ARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYL   82 (193)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTS
T ss_pred             eeeeCceEEEeccccccccceeeeeccccceeeccCcc
Confidence            34689999999999999999999999999998877654

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.74  E-value=0.32  Score=44.91  Aligned_cols=32  Identities=31%  Similarity=0.392  Sum_probs=29.7

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCC-cEEEEeeC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG   34 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~   34 (446)
                      .+|+|||+|--|..+|+.|++.|+ +++|+|..
T Consensus        38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D   70 (426)
T d1yovb1          38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMD   70 (426)
T ss_dssp             CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            589999999999999999999998 89999974

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=84.73  E-value=0.53  Score=38.43  Aligned_cols=32  Identities=25%  Similarity=0.235  Sum_probs=29.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEee
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEK   33 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~   33 (446)
                      .++|+|.|-|-.|..+|+.|.+.|.+|++.|.
T Consensus        27 gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~   58 (201)
T d1c1da1          27 GLTVLVQGLGAVGGSLASLAAEAGAQLLVADT   58 (201)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEecc
Confidence            47899999999999999999999999998875

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.69  E-value=0.53  Score=37.16  Aligned_cols=33  Identities=30%  Similarity=0.358  Sum_probs=29.8

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKG   34 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~   34 (446)
                      .++|+|||=|.-|-+=|..|+..|++|+|==|.
T Consensus        16 ~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~   48 (182)
T d1np3a2          16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRS   48 (182)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCT
T ss_pred             CCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCC
Confidence            578999999999999999999999999886553

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=84.34  E-value=0.5  Score=40.50  Aligned_cols=35  Identities=11%  Similarity=0.190  Sum_probs=29.6

Q ss_pred             CCeEEEECc-C--hHHHHHHHHHHHCCCcEEEEeeCCC
Q 013303            2 FRHVAVIGA-G--AAGLVVGHELLREGHTVVVYEKGEQ   36 (446)
Q Consensus         2 ~~~V~IIGa-G--~aGl~aA~~l~~~g~~v~v~e~~~~   36 (446)
                      .|.++|.|| |  =-|.++|+.|+++|.+|++.++++.
T Consensus         5 gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~   42 (274)
T d2pd4a1           5 GKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   42 (274)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            578899996 3  2699999999999999999998653

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=84.28  E-value=0.46  Score=42.55  Aligned_cols=34  Identities=21%  Similarity=0.281  Sum_probs=29.2

Q ss_pred             CCeEEEECc-ChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      +|.|+|.|| |.-|..++..|++.|++|+++++..
T Consensus         1 ~K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~   35 (357)
T d1db3a_           1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA   35 (357)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            367779995 9999999999999999999999853

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=84.26  E-value=0.29  Score=39.96  Aligned_cols=36  Identities=25%  Similarity=0.244  Sum_probs=32.0

Q ss_pred             CCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEec
Q 013303          194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRS  229 (446)
Q Consensus       194 ~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~  229 (446)
                      +..|++|.|||.|.+|..+|..+...|.+|....+.
T Consensus        40 el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~   75 (197)
T d1j4aa1          40 EVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIF   75 (197)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             cccCCeEEEecccccchhHHHhHhhhcccccccCcc
Confidence            457899999999999999999999999999877654

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.19  E-value=0.51  Score=38.57  Aligned_cols=31  Identities=26%  Similarity=0.273  Sum_probs=26.4

Q ss_pred             CCCeEEEECc-ChHHHHHHHHHHHCCCcEEEE
Q 013303            1 MFRHVAVIGA-GAAGLVVGHELLREGHTVVVY   31 (446)
Q Consensus         1 ~~~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~   31 (446)
                      ++|+|+|+|| |..|-..+++|.+.|..+.|+
T Consensus         1 t~KkIlItGatG~iG~~lv~~L~~~~~~~~v~   32 (212)
T d2a35a1           1 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVI   32 (212)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEE
Confidence            4789999999 999999999999999743333

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.18  E-value=0.4  Score=37.87  Aligned_cols=38  Identities=18%  Similarity=-0.018  Sum_probs=31.1

Q ss_pred             CCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          194 PFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       194 ~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      ..+|++|+|+|+|..|.=.+..+...|.+|+.+.+++.
T Consensus        25 ~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          25 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR   62 (168)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             cCCCCEEEEECCCCcchhHHHHhhhccccccccccchh
Confidence            34689999999999998877766677999998887664

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=84.14  E-value=0.47  Score=40.54  Aligned_cols=38  Identities=18%  Similarity=0.234  Sum_probs=32.7

Q ss_pred             CCCCCEEEEEecC-CcHHHHHHHHhccCCEEEEEEecCC
Q 013303          194 PFQDQVVILIGHY-ASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       194 ~~~~k~VvVVG~G-~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      .++||.++|.|++ -+|..+|..|++.|.+|.+..|+..
T Consensus         2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNRE   40 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4689999999875 4888999999999999999998653

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=84.09  E-value=0.22  Score=41.84  Aligned_cols=32  Identities=22%  Similarity=0.326  Sum_probs=27.5

Q ss_pred             EEEEEecCCcHHHHHHHHhccC-CEEEEEEecC
Q 013303          199 VVILIGHYASGLDIKRDLAGFA-KEVHIASRSV  230 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~-~~V~l~~r~~  230 (446)
                      .|+|||+|+.|+..|..+++.+ ++|.++....
T Consensus         5 DvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~   37 (240)
T d1feca1           5 DLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQK   37 (240)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHCCCEEEEESCS
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCEEEEEEEec
Confidence            6999999999999999999987 5688887543

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=84.06  E-value=0.33  Score=43.56  Aligned_cols=31  Identities=19%  Similarity=0.249  Sum_probs=28.4

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      .++|||+|.+|+-+|..|++. .+|.++.+.+
T Consensus        28 D~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~   58 (351)
T d1ju2a1          28 DYVIVGGGTSGCPLAATLSEK-YKVLVLERGS   58 (351)
T ss_dssp             EEEEECCSTTHHHHHHHHTTT-SCEEEECSSB
T ss_pred             cEEEECccHHHHHHHHHhcCC-CCEEEEecCC
Confidence            799999999999999999986 7899999876

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.00  E-value=0.54  Score=39.18  Aligned_cols=34  Identities=29%  Similarity=0.514  Sum_probs=30.4

Q ss_pred             CCeEEEECc-ChHHHHHHHHHHHCCC--cEEEEeeCC
Q 013303            2 FRHVAVIGA-GAAGLVVGHELLREGH--TVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGa-G~aGl~aA~~l~~~g~--~v~v~e~~~   35 (446)
                      +++|+|.|| |.-|-..++.|.+.|.  +|+++.|++
T Consensus        14 ~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~   50 (232)
T d2bkaa1          14 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRK   50 (232)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecCh
Confidence            578999999 9999999999999984  899999854

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=83.94  E-value=0.52  Score=37.31  Aligned_cols=32  Identities=25%  Similarity=0.309  Sum_probs=26.6

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCC-cEEEEeeC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG   34 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~   34 (446)
                      ..|+|+|+|+.|+.++..++..|. .|++.+++
T Consensus        34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~   66 (172)
T d1h2ba2          34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVK   66 (172)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred             CEEEEeCCChHHHHHHHHHHhhcCcccccccch
Confidence            479999999999999999988886 55666764

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.85  E-value=0.51  Score=37.37  Aligned_cols=33  Identities=27%  Similarity=0.267  Sum_probs=28.7

Q ss_pred             CeEEEECc-ChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .+|+|+|| |+.|+.+...+...|.+|+++..++
T Consensus        30 ~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~   63 (174)
T d1yb5a2          30 ESVLVHGASGGVGLAACQIARAYGLKILGTAGTE   63 (174)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CEEEEEeccccccccccccccccCcccccccccc
Confidence            47999996 9999999999988999998887643

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=83.82  E-value=0.53  Score=38.46  Aligned_cols=36  Identities=17%  Similarity=0.159  Sum_probs=32.4

Q ss_pred             CCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEe
Q 013303          193 NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASR  228 (446)
Q Consensus       193 ~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r  228 (446)
                      ..++|++|+|.|.|..|.-+|..|.+.|.+|++...
T Consensus        23 ~~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~   58 (201)
T d1c1da1          23 GSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADT   58 (201)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecc
Confidence            457899999999999999999999999999987654

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.80  E-value=0.36  Score=39.47  Aligned_cols=35  Identities=17%  Similarity=0.209  Sum_probs=31.8

Q ss_pred             CCEEEEEe-cCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          197 DQVVILIG-HYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       197 ~k~VvVVG-~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      .|+|+|+| +|..|..++..|.+.|.+|+++.|++.
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~   38 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS   38 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChh
Confidence            47899999 599999999999999999999999764

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.67  E-value=0.63  Score=38.96  Aligned_cols=34  Identities=26%  Similarity=0.218  Sum_probs=29.9

Q ss_pred             CCeEEEECc-ChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .|.|+|.|| |=-|.++|+.|+++|.+|.++++..
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~   36 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVE   36 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            589999999 4579999999999999999998754

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=83.58  E-value=0.68  Score=37.65  Aligned_cols=34  Identities=26%  Similarity=0.317  Sum_probs=31.0

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .++|.|||-|..|...|+.|..-|.+|..+++..
T Consensus        43 gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~   76 (197)
T d1j4aa1          43 DQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFR   76 (197)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCeEEEecccccchhHHHhHhhhcccccccCccc
Confidence            4789999999999999999999999999998753

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=83.57  E-value=0.32  Score=39.76  Aligned_cols=38  Identities=18%  Similarity=0.145  Sum_probs=33.3

Q ss_pred             CCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          193 NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       193 ~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      .+..+|+|.|||.|.+|..+|..+...|.+|+...+..
T Consensus        41 ~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~   78 (199)
T d1dxya1          41 KELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYP   78 (199)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             ccccceeeeeeecccccccccccccccceeeeccCCcc
Confidence            34578999999999999999999999999998877644

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=83.55  E-value=0.35  Score=41.59  Aligned_cols=35  Identities=14%  Similarity=0.229  Sum_probs=31.7

Q ss_pred             CCEEEEEec-CCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          197 DQVVILIGH-YASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       197 ~k~VvVVG~-G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      -|+|+|.|+ |..|..++..|.+.|.+|+.+.|.+.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~   38 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVREST   38 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCc
Confidence            378999996 99999999999999999999998765

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=83.54  E-value=0.34  Score=42.39  Aligned_cols=34  Identities=21%  Similarity=0.380  Sum_probs=30.4

Q ss_pred             CCeEEEECc-ChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      +|+|+|.|| |.-|-..+.+|++.|..+++++...
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~   36 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD   36 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCch
Confidence            579999999 9999999999999999988887543

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=83.50  E-value=0.43  Score=38.14  Aligned_cols=36  Identities=17%  Similarity=0.150  Sum_probs=32.5

Q ss_pred             CCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          196 QDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       196 ~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      ++.+|+|+|+|..|...+......|..|+++..+..
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~   63 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA   63 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHH
Confidence            356999999999999999999999999999988765

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=83.40  E-value=0.56  Score=39.97  Aligned_cols=37  Identities=24%  Similarity=0.393  Sum_probs=32.6

Q ss_pred             CCCCEEEEEecC-CcHHHHHHHHhccCCEEEEEEecCC
Q 013303          195 FQDQVVILIGHY-ASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       195 ~~~k~VvVVG~G-~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      ++||+++|.|++ -+|..+|..|++.|.+|.+..|+..
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~   41 (258)
T d1ae1a_           4 LKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEK   41 (258)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            579999999964 5889999999999999999998764

>d1iowa1 c.30.1.2 (A:1-96) D-Ala-D-Ala ligase, N-domain {Escherichia coli, gene ddlB [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: D-Alanine ligase N-terminal domain
domain: D-Ala-D-Ala ligase, N-domain
species: Escherichia coli, gene ddlB [TaxId: 562]

Probab=83.30  E-value=0.94  Score=31.97  Aligned_cols=35  Identities=26%  Similarity=0.267  Sum_probs=30.3

Q ss_pred             CCCeEEEECcCh---------HHHHHHHHHHHCCCcEEEEeeCC
Q 013303            1 MFRHVAVIGAGA---------AGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         1 ~~~~V~IIGaG~---------aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      |+++|+|+-||+         +|.+....|.+.+++|..+|...
T Consensus         1 M~~kI~vl~GG~S~E~~iSl~Sa~~v~~~L~~~~~~v~~i~~~~   44 (96)
T d1iowa1           1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE   44 (96)
T ss_dssp             CCCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTT
T ss_pred             CCceEEEEeCcCchhhHhHHhhHHHHHHHHHHcCeeEeeecCcc
Confidence            788999999996         57888888889999999999754

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=83.24  E-value=0.54  Score=37.02  Aligned_cols=33  Identities=21%  Similarity=0.281  Sum_probs=28.0

Q ss_pred             CeEEEECc-ChHHHHHHHHHHHCCC-cEEEEeeCC
Q 013303            3 RHVAVIGA-GAAGLVVGHELLREGH-TVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGa-G~aGl~aA~~l~~~g~-~v~v~e~~~   35 (446)
                      .+|+|+|+ |+.|+.++..+...|. +|++++.++
T Consensus        29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~   63 (170)
T d1jvba2          29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE   63 (170)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred             CEEEEEeccccceeeeeecccccccccccccccch
Confidence            47999995 9999999999988884 888888754

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=83.21  E-value=0.41  Score=41.46  Aligned_cols=34  Identities=15%  Similarity=0.142  Sum_probs=30.7

Q ss_pred             CEEEEEec-CCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          198 QVVILIGH-YASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       198 k~VvVVG~-G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      ++|+|+|| |..|..++..|.+.|.+|+.+.|+..
T Consensus         4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   38 (312)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence            57999996 99999999999999999999998754

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=83.13  E-value=0.43  Score=41.49  Aligned_cols=38  Identities=26%  Similarity=0.397  Sum_probs=33.6

Q ss_pred             CCCCCEEEEEec-CCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          194 PFQDQVVILIGH-YASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       194 ~~~~k~VvVVG~-G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      .++||.++|.|+ +-+|..+|..|++.|.+|++..|+..
T Consensus        22 ~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~   60 (294)
T d1w6ua_          22 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMD   60 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH
Confidence            588999999984 67889999999999999999998764

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.10  E-value=0.27  Score=43.99  Aligned_cols=32  Identities=19%  Similarity=0.184  Sum_probs=27.1

Q ss_pred             EEEEEecCCcHHHHHHHHhc----cCCEEEEEEecC
Q 013303          199 VVILIGHYASGLDIKRDLAG----FAKEVHIASRSV  230 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~----~~~~V~l~~r~~  230 (446)
                      .|+|||+|.+|+-.|..+++    .|.+|.++.+.+
T Consensus        23 DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~   58 (356)
T d1jnra2          23 DILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA   58 (356)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSC
T ss_pred             CEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCC
Confidence            59999999999998888864    688999998643

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.07  E-value=0.57  Score=41.46  Aligned_cols=33  Identities=27%  Similarity=0.365  Sum_probs=29.8

Q ss_pred             CeE-EEECc-ChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHV-AVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V-~IIGa-G~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      |+| +|.|| |..|-.++..|.+.|++|+.+++..
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~   35 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRS   35 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            578 68898 8999999999999999999999854

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=82.90  E-value=0.58  Score=39.69  Aligned_cols=38  Identities=26%  Similarity=0.398  Sum_probs=32.6

Q ss_pred             CCCCCEEEEEecC-CcHHHHHHHHhccCCEEEEEEecCC
Q 013303          194 PFQDQVVILIGHY-ASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       194 ~~~~k~VvVVG~G-~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      +++||.++|.|++ -+|..+|..|++.|.+|.+..|+..
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~   40 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLE   40 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4689999999875 4888999999999999999998754

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=82.78  E-value=0.29  Score=42.85  Aligned_cols=31  Identities=32%  Similarity=0.414  Sum_probs=27.2

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      .|+|||+|.+|+-.|..+++.+ +|.++...+
T Consensus         9 DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~   39 (305)
T d1chua2           9 DVLIIGSGAAGLSLALRLADQH-QVIVLSKGP   39 (305)
T ss_dssp             SEEEECCSHHHHHHHHHHTTTS-CEEEECSSC
T ss_pred             CEEEECccHHHHHHHHHhhcCC-CEEEEECCC
Confidence            5999999999999999998877 899987654

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=82.70  E-value=0.71  Score=37.36  Aligned_cols=34  Identities=24%  Similarity=0.304  Sum_probs=30.9

Q ss_pred             CCeEEEECcChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .+.|.|||.|-.|-..|+.|...|.+|..+++..
T Consensus        49 gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~   82 (193)
T d1mx3a1          49 GETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYL   82 (193)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTS
T ss_pred             CceEEEeccccccccceeeeeccccceeeccCcc
Confidence            4689999999999999999999999999999753

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.60  E-value=0.67  Score=39.03  Aligned_cols=37  Identities=16%  Similarity=0.231  Sum_probs=32.4

Q ss_pred             CCCCEEEEEecC-CcHHHHHHHHhccCCEEEEEEecCC
Q 013303          195 FQDQVVILIGHY-ASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       195 ~~~k~VvVVG~G-~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      .+||.++|.|++ -.|..+|..|++.|.+|.++.|+..
T Consensus         3 lkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~   40 (248)
T d2o23a1           3 VKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNS   40 (248)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            589999999865 4888999999999999999998765

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=82.49  E-value=0.39  Score=37.71  Aligned_cols=32  Identities=19%  Similarity=0.105  Sum_probs=29.5

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      +|.|||.|..|.-+|..|.+.|.+|+...|++
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            69999999999999999999999999987764

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=82.43  E-value=0.44  Score=37.54  Aligned_cols=37  Identities=22%  Similarity=0.152  Sum_probs=31.6

Q ss_pred             CCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       195 ~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      ..|.+|+|+|+|..|.=.+..+...|.+|+.+.+++.
T Consensus        25 ~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~   61 (170)
T d1e3ja2          25 QLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPR   61 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEEcccccchhhHhhHhhhcccccccchHHH
Confidence            3578999999999999988888888999998887654

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=82.41  E-value=0.6  Score=39.59  Aligned_cols=35  Identities=20%  Similarity=0.340  Sum_probs=28.7

Q ss_pred             CCeEEEECcCh---HHHHHHHHHHHCCCcEEEEeeCCC
Q 013303            2 FRHVAVIGAGA---AGLVVGHELLREGHTVVVYEKGEQ   36 (446)
Q Consensus         2 ~~~V~IIGaG~---aGl~aA~~l~~~g~~v~v~e~~~~   36 (446)
                      .|.++|.||+-   -|.++|+.|++.|.+|++.++.+.
T Consensus         8 gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~   45 (256)
T d1ulua_           8 GKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER   45 (256)
T ss_dssp             TCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHH
Confidence            46788888642   699999999999999998887643

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=82.34  E-value=0.62  Score=39.66  Aligned_cols=33  Identities=12%  Similarity=0.145  Sum_probs=27.6

Q ss_pred             CCeEEEECc-Ch--HHHHHHHHHHHCCCcEEEEeeC
Q 013303            2 FRHVAVIGA-GA--AGLVVGHELLREGHTVVVYEKG   34 (446)
Q Consensus         2 ~~~V~IIGa-G~--aGl~aA~~l~~~g~~v~v~e~~   34 (446)
                      .|.++|.|| |-  .|.++|+.|++.|.+|++.+++
T Consensus         6 gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~   41 (268)
T d2h7ma1           6 GKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFD   41 (268)
T ss_dssp             TCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            478889985 54  5888999999999999998764

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=82.32  E-value=0.65  Score=39.12  Aligned_cols=37  Identities=14%  Similarity=0.134  Sum_probs=32.3

Q ss_pred             CCCCEEEEEecC-CcHHHHHHHHhccCCEEEEEEecCC
Q 013303          195 FQDQVVILIGHY-ASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       195 ~~~k~VvVVG~G-~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      ++||.++|.|++ -+|..+|..|++.|.+|.+..|+..
T Consensus         3 L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~   40 (242)
T d1ulsa_           3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEG   40 (242)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            678999999865 5999999999999999999998754

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=82.28  E-value=0.66  Score=33.79  Aligned_cols=35  Identities=20%  Similarity=0.251  Sum_probs=31.6

Q ss_pred             CCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          197 DQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       197 ~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      ..+|.|+|||.-|.-+|....+.|.+|+++..++.
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            46899999999999999999999999999987654

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=81.64  E-value=0.81  Score=38.57  Aligned_cols=33  Identities=18%  Similarity=0.295  Sum_probs=26.7

Q ss_pred             CeEEEECc-ChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      |=|+|.|| +=-|.++|+.|++.|.+|++.++++
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~   35 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRD   35 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            44566676 4478999999999999999999754

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.55  E-value=0.72  Score=40.91  Aligned_cols=31  Identities=32%  Similarity=0.406  Sum_probs=28.2

Q ss_pred             CeEEEECc-ChHHHHHHHHHHHCCCcEEEEee
Q 013303            3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEK   33 (446)
Q Consensus         3 ~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~   33 (446)
                      |-|+|.|| |.-|-..+..|++.|++|+++++
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~   33 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADN   33 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEEC
Confidence            55888888 89999999999999999999985

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.50  E-value=0.65  Score=37.87  Aligned_cols=32  Identities=19%  Similarity=0.013  Sum_probs=29.0

Q ss_pred             EEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          199 VVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      +|.|||.|..|.-+|..|++.|.+|+.+....
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            68999999999999999999999999887543

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=81.47  E-value=0.71  Score=40.92  Aligned_cols=33  Identities=30%  Similarity=0.227  Sum_probs=29.4

Q ss_pred             CCeEEEECc-ChHHHHHHHHHHHCCCcEEEEeeC
Q 013303            2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKG   34 (446)
Q Consensus         2 ~~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~~   34 (446)
                      .++|+|.|| |..|...++.|.+.|++|..+.|+
T Consensus        11 gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~   44 (342)
T d1y1pa1          11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARS   44 (342)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCC
Confidence            378999999 999999999999999999877653

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=81.46  E-value=0.62  Score=39.70  Aligned_cols=34  Identities=21%  Similarity=0.332  Sum_probs=28.7

Q ss_pred             CCeEEEECcCh-HHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGAGA-AGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGaG~-aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      .|.++|.||+- -|.++|+.|++.|.+|++.+++.
T Consensus         9 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   43 (260)
T d1h5qa_           9 NKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSA   43 (260)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            36678888854 68899999999999999999865

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=81.42  E-value=0.71  Score=39.07  Aligned_cols=35  Identities=14%  Similarity=0.294  Sum_probs=28.8

Q ss_pred             CCeEEEECcCh---HHHHHHHHHHHCCCcEEEEeeCCC
Q 013303            2 FRHVAVIGAGA---AGLVVGHELLREGHTVVVYEKGEQ   36 (446)
Q Consensus         2 ~~~V~IIGaG~---aGl~aA~~l~~~g~~v~v~e~~~~   36 (446)
                      .|.|+|.||+-   -|.++|+.|++.|.+|++.++++.
T Consensus         5 gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~   42 (258)
T d1qsga_           5 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK   42 (258)
T ss_dssp             TCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            46788888754   478899999999999999998754

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=81.38  E-value=0.74  Score=39.18  Aligned_cols=38  Identities=21%  Similarity=0.307  Sum_probs=32.4

Q ss_pred             CCCCCEEEEEecC-CcHHHHHHHHhccCCEEEEEEecCC
Q 013303          194 PFQDQVVILIGHY-ASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       194 ~~~~k~VvVVG~G-~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      +++||.++|.|++ -+|..+|..|++.|.+|.+..|+..
T Consensus         5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   43 (259)
T d2ae2a_           5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQK   43 (259)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            3579999999876 4888999999999999999998654

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=81.29  E-value=0.77  Score=33.80  Aligned_cols=35  Identities=9%  Similarity=0.067  Sum_probs=29.6

Q ss_pred             CCEEEEEecCC-----------cHHHHHHHHhccCCEEEEEEecCC
Q 013303          197 DQVVILIGHYA-----------SGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       197 ~k~VvVVG~G~-----------sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      .|+|+|+|+|+           ++..++..|.+.|.++.++...|.
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe   49 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE   49 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence            47999999995           677788889999999999887765

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=81.29  E-value=0.73  Score=38.53  Aligned_cols=37  Identities=22%  Similarity=0.295  Sum_probs=31.9

Q ss_pred             CCCCEEEEEecC-CcHHHHHHHHhccCCEEEEEEecCC
Q 013303          195 FQDQVVILIGHY-ASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       195 ~~~k~VvVVG~G-~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      .+||+++|.|++ -+|..+|..|++.|.+|.+..|+..
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~   39 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEE   39 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            478999999964 5899999999999999999988753

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=81.19  E-value=0.7  Score=40.49  Aligned_cols=30  Identities=20%  Similarity=0.445  Sum_probs=28.2

Q ss_pred             eEEEECc-ChHHHHHHHHHHHCCCcEEEEee
Q 013303            4 HVAVIGA-GAAGLVVGHELLREGHTVVVYEK   33 (446)
Q Consensus         4 ~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~   33 (446)
                      +|+|.|| |.-|-..++.|.++|++|+++++
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~   32 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            6899998 99999999999999999999985

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=81.15  E-value=0.61  Score=36.88  Aligned_cols=33  Identities=24%  Similarity=0.175  Sum_probs=28.3

Q ss_pred             CeEEEECc-ChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      ..|+|.|| |+.|+.+...+...|.+|+..++++
T Consensus        29 ~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~   62 (171)
T d1iz0a2          29 EKVLVQAAAGALGTAAVQVARAMGLRVLAAASRP   62 (171)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CEEEEEeccccchhhhhhhhcccccccccccccc
Confidence            46889896 9999999999988999999888653

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.02  E-value=0.7  Score=36.12  Aligned_cols=34  Identities=12%  Similarity=0.113  Sum_probs=30.7

Q ss_pred             CEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          198 QVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       198 k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      ++|.|||-|..|.-+|..|.+.|.+|++..|+..
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~   35 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQS   35 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchh
Confidence            5799999999999999999999999999887653

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=80.96  E-value=0.74  Score=38.43  Aligned_cols=34  Identities=26%  Similarity=0.301  Sum_probs=29.4

Q ss_pred             CCeEEEECc-ChHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            2 FRHVAVIGA-GAAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         2 ~~~V~IIGa-G~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      ..+|+|.|| |=.|.+.|+.|++.|.+|+++++..
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~   36 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSA   36 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            357999998 5668999999999999999999864

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=80.75  E-value=0.4  Score=37.12  Aligned_cols=34  Identities=18%  Similarity=0.137  Sum_probs=30.9

Q ss_pred             CEEEEEe-cCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          198 QVVILIG-HYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       198 k~VvVVG-~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      ++|.||| .|..|.-+|..|.+.|-+|++..+...
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~   44 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   44 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccc
Confidence            7999999 699999999999999999999887653

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=80.67  E-value=0.65  Score=37.03  Aligned_cols=37  Identities=19%  Similarity=0.139  Sum_probs=30.1

Q ss_pred             CCCCEEEEEecCCcHHHHHHHHhccCC-EEEEEEecCC
Q 013303          195 FQDQVVILIGHYASGLDIKRDLAGFAK-EVHIASRSVA  231 (446)
Q Consensus       195 ~~~k~VvVVG~G~sg~eia~~l~~~~~-~V~l~~r~~~  231 (446)
                      -+|.+|+|+|+|.+|.-.+..+...|. +|+++.+++.
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~   64 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN   64 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred             CCCCEEEEECCCccchhheecccccccccccccccccc
Confidence            368999999999999877777777775 7888887654

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=80.65  E-value=0.82  Score=39.06  Aligned_cols=38  Identities=24%  Similarity=0.302  Sum_probs=32.5

Q ss_pred             CCCCCEEEEEecC-CcHHHHHHHHhccCCEEEEEEecCC
Q 013303          194 PFQDQVVILIGHY-ASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       194 ~~~~k~VvVVG~G-~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      .++||.++|.|++ -+|..+|..|++.|.+|.+..|+..
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~   41 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADD   41 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4689999999865 5888999999999999999998654

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=80.65  E-value=0.85  Score=40.22  Aligned_cols=32  Identities=31%  Similarity=0.424  Sum_probs=28.5

Q ss_pred             CeEEEECc-ChHHHHHHHHHHHCC-CcEEEEeeC
Q 013303            3 RHVAVIGA-GAAGLVVGHELLREG-HTVVVYEKG   34 (446)
Q Consensus         3 ~~V~IIGa-G~aGl~aA~~l~~~g-~~v~v~e~~   34 (446)
                      ++|+|.|| |..|-..++.|++.| .+|.++++.
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~   34 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIG   34 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            37999999 999999999999998 589999874

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=80.62  E-value=0.36  Score=40.13  Aligned_cols=31  Identities=23%  Similarity=0.334  Sum_probs=26.3

Q ss_pred             EEEEEecCCcHHHHHHHHhccCC-EEEEEEec
Q 013303          199 VVILIGHYASGLDIKRDLAGFAK-EVHIASRS  229 (446)
Q Consensus       199 ~VvVVG~G~sg~eia~~l~~~~~-~V~l~~r~  229 (446)
                      .|+|||+|+.|+..|..+++.+. .|.++...
T Consensus         5 DviIIG~GpaGl~aA~~aa~~g~k~V~iie~~   36 (238)
T d1aoga1           5 DLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQ   36 (238)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTSCCCEEEEESC
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCEEEEEEee
Confidence            58999999999999999999875 57777653

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.61  E-value=0.4  Score=37.38  Aligned_cols=32  Identities=19%  Similarity=0.129  Sum_probs=25.1

Q ss_pred             CCeEEEECc-ChHHHHHHHHHHHCCC-------cEEEEee
Q 013303            2 FRHVAVIGA-GAAGLVVGHELLREGH-------TVVVYEK   33 (446)
Q Consensus         2 ~~~V~IIGa-G~aGl~aA~~l~~~g~-------~v~v~e~   33 (446)
                      +.+|+|||| |..|.++|..|+..++       +..++|.
T Consensus         3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~   42 (154)
T d5mdha1           3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDI   42 (154)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECC
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecC
Confidence            468999996 9999999999987542       3556655

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=80.51  E-value=0.89  Score=36.54  Aligned_cols=38  Identities=24%  Similarity=0.255  Sum_probs=33.9

Q ss_pred             CCCCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecC
Q 013303          193 NPFQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSV  230 (446)
Q Consensus       193 ~~~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~  230 (446)
                      .+..+++|.|||.|.+|..+|..+...+.+|....+..
T Consensus        40 ~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~   77 (188)
T d2naca1          40 YDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHR   77 (188)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSC
T ss_pred             eeccccceeeccccccchhhhhhhhccCceEEEEeecc
Confidence            45678999999999999999999999999999888754

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.49  E-value=0.56  Score=44.57  Aligned_cols=32  Identities=25%  Similarity=0.386  Sum_probs=29.4

Q ss_pred             CeEEEECcChHHHHHHHHHHHCCC-cEEEEeeC
Q 013303            3 RHVAVIGAGAAGLVVGHELLREGH-TVVVYEKG   34 (446)
Q Consensus         3 ~~V~IIGaG~aGl~aA~~l~~~g~-~v~v~e~~   34 (446)
                      .+|+|||+|..|..+|+.|...|. +++|+|..
T Consensus        26 s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d   58 (529)
T d1yova1          26 AHVCLINATATGTEILKNLVLPGIGSFTIIDGN   58 (529)
T ss_dssp             CEEEECCCSHHHHHHHHHHHTTTCSEEEEECCS
T ss_pred             CCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCC
Confidence            589999999999999999999997 79999864

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.41  E-value=0.58  Score=36.66  Aligned_cols=37  Identities=16%  Similarity=-0.039  Sum_probs=31.0

Q ss_pred             CCCCEEEEEecCCcHHHHHHHHhccCCEEEEEEecCC
Q 013303          195 FQDQVVILIGHYASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       195 ~~~k~VvVVG~G~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      .+|++|+|+|+|..|.=.+..+...|.+|+.+.+++.
T Consensus        26 ~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~   62 (166)
T d1llua2          26 RPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDA   62 (166)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEeeccccHHHHHHHHHHcCCccceecchhh
Confidence            4688999999999998888777778899998887653

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=80.32  E-value=0.84  Score=38.68  Aligned_cols=33  Identities=30%  Similarity=0.610  Sum_probs=26.5

Q ss_pred             CeEE-EECcC-hHHHHHHHHHHHCCCcEEEEeeCC
Q 013303            3 RHVA-VIGAG-AAGLVVGHELLREGHTVVVYEKGE   35 (446)
Q Consensus         3 ~~V~-IIGaG-~aGl~aA~~l~~~g~~v~v~e~~~   35 (446)
                      |+|+ |-||+ =-|.++|+.|++.|.+|++.++++
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~   35 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYND   35 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            5665 55764 478899999999999999999864

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=80.29  E-value=0.59  Score=39.79  Aligned_cols=38  Identities=21%  Similarity=0.252  Sum_probs=32.0

Q ss_pred             CCCCCEEEEEecC-CcHHHHHHHHhccCCEEEEEEecCC
Q 013303          194 PFQDQVVILIGHY-ASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       194 ~~~~k~VvVVG~G-~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      .+.||.|+|.|++ -+|.++|..|++.|.+|.+..++..
T Consensus         3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~   41 (259)
T d1ja9a_           3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSS   41 (259)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCCh
Confidence            3679999998865 4889999999999999998877654

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.20  E-value=0.5  Score=39.95  Aligned_cols=88  Identities=15%  Similarity=0.157  Sum_probs=52.0

Q ss_pred             CCCCEEEEEec-CCcHHHHHHHHhccCCEEEEEEecCCccccccCCCCCCeeeccceeEEccCCcEEecCCcEEeecEEE
Q 013303          195 FQDQVVILIGH-YASGLDIKRDLAGFAKEVHIASRSVADETHEKQPGYDNMWLHSMVERANEDGTVVFRNGRVVSADVIM  273 (446)
Q Consensus       195 ~~~k~VvVVG~-G~sg~eia~~l~~~~~~V~l~~r~~~~~~~~~~~~~~~v~~~~~v~~i~~~~~v~~~dG~~~~~D~vi  273 (446)
                      ++||.++|.|+ +-.|..+|..|++.|.+|.+..|+..  .++++.+...+..  .+..+.....+...-...-..|.+|
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~--~l~~~~~~~~~~~--~~~d~~~~~~~~~~~~~~~~id~lV   79 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINES--KLQELEKYPGIQT--RVLDVTKKKQIDQFANEVERLDVLF   79 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH--HHGGGGGSTTEEE--EECCTTCHHHHHHHHHHCSCCSEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHhccCCce--eeeeccccccccccccccccceeEE
Confidence            78999988875 56888999999999999999998753  2222222222111  0000000000000000012479999


Q ss_pred             EecCccCCCCCCC
Q 013303          274 HCTGYKYNYPFLE  286 (446)
Q Consensus       274 ~atG~~~~~~~l~  286 (446)
                      .+.|..+..++.+
T Consensus        80 n~ag~~~~~~~~~   92 (245)
T d2ag5a1          80 NVAGFVHHGTVLD   92 (245)
T ss_dssp             ECCCCCCCBCGGG
T ss_pred             ecccccCCCChhh
Confidence            9999988877654

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=80.18  E-value=0.89  Score=38.32  Aligned_cols=38  Identities=21%  Similarity=0.283  Sum_probs=32.7

Q ss_pred             CCCCCEEEEEecC-CcHHHHHHHHhccCCEEEEEEecCC
Q 013303          194 PFQDQVVILIGHY-ASGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       194 ~~~~k~VvVVG~G-~sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      .++||.++|.|++ -+|..+|..|++.|.+|.+..|++.
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~   40 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA   40 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            4689999998875 4888999999999999999988764

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=80.09  E-value=1  Score=33.51  Aligned_cols=36  Identities=17%  Similarity=0.157  Sum_probs=30.1

Q ss_pred             CCCEEEEEecCC-----------cHHHHHHHHhccCCEEEEEEecCC
Q 013303          196 QDQVVILIGHYA-----------SGLDIKRDLAGFAKEVHIASRSVA  231 (446)
Q Consensus       196 ~~k~VvVVG~G~-----------sg~eia~~l~~~~~~V~l~~r~~~  231 (446)
                      ..|+|+|+|+|+           +++..+..|.+.|-++.++...+.
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~   52 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPA   52 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTT
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchH
Confidence            358999999996           677788889999999998887764