Citrus Sinensis ID: 013305

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-----
Protein Sequence
MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDESKGGEVKDDSSLVSVMSSSISTEVDRLILPSEDAQSKEPKPFVQGMSMKISDMMAKAKTACSMSLGLGEDSINASAVLVMPMVSSKINGFRGNRFDRAKLFNVKNSGSDWSGISIDEDGAKLLETSAGLPPSP
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccEEEEEHHHHHHHHHEEEEEEcccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccHHHcccccccccccccEEEEEEHHHccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEccEEEEEEcccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccEccccccccHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccEEccccccccccccHHHHHHHEHHHHHHHHHHHHHHHHcccccccEcHHHEEEEcccccccccccccccccccEEEccccccccccccccccHHHHccccccccccc
Coil and Loop (DISEMBL)
MGEWVIGAFINLVGSIAINFGtnllklghierekhstldsdgtngkhslkpIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVsfgnhqspvytpeqlaekysnITFLVYCLILIFIVAIYHYIYRKGenllavsgqdnrywrmLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGIsllapdeskggevkddsSLVSVMSSsistevdrlilpsedaqskepkpfvqgMSMKISDMMAKAKTACSMslglgedsinASAVLVMPMVsskingfrgnrfdraklfnvknsgsdwsgisideDGAKLletsaglppsp
Flexible Loop (DISEMBL)
MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHstldsdgtngKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDESKGGEVKDDSSLVSVMSssistevdrlilpsedaqskepkpfVQGMSMKISDMMAKAKTACSMSLGLGEDSINASAVLVMPMVSSKINGFRGNRFDRAKLfnvknsgsdwsgisIDEDGAKLLetsaglppsp
Low Complexity Region (SEG)
MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDESKGGEvkddsslvsvmsssistevdRLILPSEDAQSKEPKPFVQGMSMKISDMMAKAKTACSMSLGLGEDSINASAVLVMPMVSSKINGFRGNRFDRAKLFNVKNSGSDWSGISIDEDGAKLLETSAGLPPSP
Disordered region (IsUnstruct)
***WVIGAFINLVGSIAINFGTNLLKLGHIE****************SLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLA*******************************************************************LGLGEDSINASAVLVMPMVSSKINGFRGNRFDRAKLFNVKN****W***********************
Disordered Region (DISOPRED)
*GEWVIGAFINLVGSIAINFGTNLLKLGH*******************LKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQS**YTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLL*****************************************************************************************************************************************
Disordered Region (DISEMBL)
MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDE************VSVMSSSISTEVDRLILPSEDAQSKEPKPFVQGMSMKISDMMAKAKTACSMSLGLGEDSINASAVLVMPMVSSKINGFRGNRFDRAKLFNVKNSGSDWSGISIDEDGAKLLET********
Disordered Region (DISPRO)
*GEWVIGAFINLVGSIAINFGTNLLKLGHIEREKH***********HSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDE*************************************EPKPFVQGMSMKISDMMAKAKTACSMSLGLGEDSINASAVLVMPMVSSKINGFRGNRFDRAKLFNVKNSGSDWSGISIDEDGAKLLETSAG*****
Transmembrane Helix (TMHMM)
ooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDESKGGEVKDDSSLVSVMSSSISTEVDRLILPSEDAQSKEPKPFVQGMSMKISDMMAKAKTACSMSLGLGEDSINASAVLVMPMVSSKINGFRGNRFDRAKLFNVKNSGSDWSGISIDEDGAKLLETSAGLPPSP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	445	2.2.26 [Sep-21-2011]
Q5RD30	406	NIPA-like protein 3 OS=Po	yes	no	0.748	0.820	0.226	5e-13
Q6P499	406	NIPA-like protein 3 OS=Ho	yes	no	0.640	0.701	0.236	6e-13
Q91WC7	383	NIPA-like protein 2 OS=Mu	yes	no	0.633	0.736	0.213	8e-12
Q9H841	368	NIPA-like protein 2 OS=Ho	no	no	0.647	0.782	0.206	1e-10
Q8BGN5	410	NIPA-like protein 3 OS=Mu	no	no	0.642	0.697	0.247	2e-09
Q8BZF2	406	Magnesium transporter NIP	no	no	0.622	0.682	0.208	1e-08
Q3SWX0	360	Magnesium transporter NIP	no	no	0.516	0.638	0.231	2e-08
Q0D2K0	466	Magnesium transporter NIP	no	no	0.507	0.484	0.228	9e-08
Q5R7Q3	360	Magnesium transporter NIP	no	no	0.516	0.638	0.223	1e-07
Q8N8Q9	360	Magnesium transporter NIP	no	no	0.516	0.638	0.223	1e-07

>sp|Q5RD30|NPAL3_PONAB NIPA-like protein 3 OS=Pongo abelii GN=NIPAL3 PE=2 SV=1

 Score = 76.3 bits (186), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 90/397 (22%), Positives = 160/397 (40%), Gaps = 64/397 (16%)

Query: 3   EWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGI 62
           E +IGA + + G + ++   NL K  HI              G    +      +W +G+
Sbjct: 32  ENLIGALLAIFGHLVVSIALNLQKYCHIR-----------LAGSKDPRAYFKTKTWWLGL 80

Query: 63  LVFLLGNCLNFISFGYAAQSLLAALGSVQFV-SNIAFSYFVFNKMVTVKVL-------VA 114
            + LLG    F S+ +A  SL+  L +V  + S I    F+  K      L       V 
Sbjct: 81  FLMLLGELGVFASYAFAPLSLIVPLSAVSVIASAIIGIIFIKEKWKPKDFLRRYILSFVG 140

Query: 115 TAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCL--ILIFIVAIYHYIYRKGE 172
               V+G   LV+F  +     T E +     +  FL+Y L  I++F + +Y Y  +   
Sbjct: 141 CGLAVVGTYLLVTFAPNSREKMTGENVTRHLVSWPFLLYMLVEIILFCLLLYFYKEKNAN 200

Query: 173 NLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYS 232
           N++ +                 ++   +GS +V+  K+++ +L L++    QL     Y 
Sbjct: 201 NIVVIL----------------LLVALLGSMTVVTVKAVAGMLVLSIQGNLQLDYPIFYV 244

Query: 233 MLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRAT 292
           M +   +TA +  A L++   ++D+ LI  +  I  T+ +I  G +++ ++   D L   
Sbjct: 245 MFVCMVATAVYQAAFLSQASQMYDSSLIASVGYILSTTIAITAGAIFYLDFIGEDVLHIC 304

Query: 293 MFILGTASVFIGISLLAPDESKGGEVKDDSSLVSVMSSSISTEVDRLILPSEDAQSKEPK 352
           MF LG    F+G+ L+  +  K                          +P E   S +  
Sbjct: 305 MFALGCLIAFLGVFLITRNRKKA-------------------------IPFEPYISMDAM 339

Query: 353 PFVQGMSMKISDMMAKAKTACSMSLGLGEDSINASAV 389
           P +Q M  K   M  + +   S S G  E++ N S +
Sbjct: 340 PGMQNMHDK--GMTVQPELKASFSYGALENNDNISEI 374

Pongo abelii (taxid: 9601)

>sp|Q6P499|NPAL3_HUMAN NIPA-like protein 3 OS=Homo sapiens GN=NIPAL3 PE=1 SV=1

 Score = 75.9 bits (185), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 138/322 (42%), Gaps = 37/322 (11%)

Query: 3   EWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGI 62
           E +IGA + + G + ++   NL K  HI              G    +      +W +G+
Sbjct: 32  ENLIGALLAIFGHLVVSIALNLQKYCHIRLA-----------GSKDPRAYFKTKTWWLGL 80

Query: 63  LVFLLGNCLNFISFGYAAQSLLAALGSVQFV-SNIAFSYFVFNKMVTVKVL-------VA 114
            + LLG    F S+ +A  SL+  L +V  + S I    F+  K      L       V 
Sbjct: 81  FLMLLGELGVFASYAFAPLSLIVPLSAVSVIASAIIGIIFIKEKWKPKDFLRRYVLSFVG 140

Query: 115 TAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCL--ILIFIVAIYHYIYRKGE 172
               V+G   LV+F  +     T E +     +  FL+Y L  I++F + +Y Y  +   
Sbjct: 141 CGLAVVGTYLLVTFAPNSHEKMTGENVTRHLVSWPFLLYMLVEIILFCLLLYFYKEKNAN 200

Query: 173 NLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYS 232
           N++ +                 ++   +GS +V+  K+++ +L L++    QL     Y 
Sbjct: 201 NIVVIL----------------LLVALLGSMTVVTVKAVAGMLVLSIQGNLQLDYPIFYV 244

Query: 233 MLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRAT 292
           M +   +TA +  A L++   ++D+ LI  +  I  T+ +I  G +++ ++   D L   
Sbjct: 245 MFVCMVATAVYQAAFLSQASQMYDSSLIASVGYILSTTIAITAGAIFYLDFIGEDVLHIC 304

Query: 293 MFILGTASVFIGISLLAPDESK 314
           MF LG    F+G+ L+  +  K
Sbjct: 305 MFALGCLIAFLGVFLITRNRKK 326

Homo sapiens (taxid: 9606)

>sp|Q91WC7|NPAL2_MOUSE NIPA-like protein 2 OS=Mus musculus GN=Nipal2 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 66/309 (21%), Positives = 132/309 (42%), Gaps = 27/309 (8%)

Query: 7   GAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFL 66
           G  + ++G++ I+   N+ K  H+   +           K   KP      W  G+L+  
Sbjct: 50  GVLLAILGNLVISISLNIQKYSHLHLAQ-----------KEHPKPYFKSVLWLSGVLLTA 98

Query: 67  LGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV 126
           LG   NF ++G A  +L+A LG +    +   S     + +    L+       G   LV
Sbjct: 99  LGETGNFAAYGVAPITLIAPLGCMSVTGSAIISVLFLKENLRASDLLGMTLAFAGTYLLV 158

Query: 127 SFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIY-RKGENLLAVSGQDNRYW 185
           +F  + +   +   +   +    FLVY ++ I +  I  Y + RKG   + V        
Sbjct: 159 NFAPNITQAISARTVQYYFVGWQFLVYVILEILVFCILLYFHKRKGMKHIVVL------- 211

Query: 186 RMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTAGFWM 245
                     +   + S +V+  K++S ++ L+++   QL     Y ML++  ++  F +
Sbjct: 212 --------LTLVALLASLTVISVKAVSGMITLSVTGKMQLTYAIFYIMLVIMIASCVFQV 263

Query: 246 ARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGI 305
             LN+   L+    +VP+  + +T+ +I  G +++QE+     L   +++ G    F+G+
Sbjct: 264 KFLNQATELYTMTTVVPVNHVFFTTSAIIAGIIFYQEFLGAAFLTVFIYLFGCFLSFLGV 323

Query: 306 SLLAPDESK 314
            L+  +  K
Sbjct: 324 FLVTRNREK 332

Mus musculus (taxid: 10090)

>sp|Q9H841|NPAL2_HUMAN NIPA-like protein 2 OS=Homo sapiens GN=NIPAL2 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/320 (20%), Positives = 139/320 (43%), Gaps = 32/320 (10%)

Query: 2   GEW-------VIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVH 54
           G+W       + G  + ++G++ I+   N+ K  H++  +           +H  +P   
Sbjct: 38  GDWYRRNQIHLFGVLLAILGNLVISISLNIQKYSHLQLAQQ----------EHP-RPYFK 86

Query: 55  YHSWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVA 114
              W  G+L+  +G   NF ++G+A  +L+A LG V    +   S       +    L+ 
Sbjct: 87  SVLWWGGVLLMAVGETGNFAAYGFAPITLIAPLGCVSVTGSAIISVTFLKDNLRASDLLG 146

Query: 115 TAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENL 174
           T     G   LV+F  + +   +   +        FL+Y ++ I I  I  Y Y++    
Sbjct: 147 TTLAFAGTYLLVNFAPNITQAISARTVQYYLVGWQFLIYVILEILIFCILLYFYKR---- 202

Query: 175 LAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSML 234
                +  ++  +LL      +   + S +V+  K++S ++  ++ +  QL     Y M 
Sbjct: 203 -----KGMKHMVILL-----TLVAILASLTVISVKAVSGMITFSVMDKMQLTYPIFYIMF 252

Query: 235 LLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMF 294
           ++  ++  F +  LN+   L++   +VP+  I +T  +I  G +++QE+     L   ++
Sbjct: 253 IIMIASCVFQVKFLNQATKLYNTTTVVPVNHIFFTISAIIAGIIFYQEFLGAPFLTVFIY 312

Query: 295 ILGTASVFIGISLLAPDESK 314
           + G    F+G+ L+  +  K
Sbjct: 313 LFGCFLSFLGVFLVTRNREK 332

Homo sapiens (taxid: 9606)

>sp|Q8BGN5|NPAL3_MOUSE NIPA-like protein 3 OS=Mus musculus GN=Nipal3 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 142/323 (43%), Gaps = 37/323 (11%)

Query: 3   EWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGI 62
           E +IGA + + G + ++   NL K  HI              G    +      +W +G+
Sbjct: 36  ENLIGALLAIFGHLVVSIALNLQKYCHIR-----------LAGSKDPRAYFKTKTWWLGL 84

Query: 63  LVFLLGNCLNFISFGYAAQSLLAALGSVQFV-SNIAFSYFVFNK-----MVTVKVL--VA 114
           L+ LLG    F S+ +A  SL+  L +V  + S I    F+  K      V   VL  V 
Sbjct: 85  LLLLLGELGVFASYAFAPLSLIVPLSAVSVIASAIIGIIFIKEKWKPKDFVRRYVLSFVG 144

Query: 115 TAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCL--ILIFIVAIYHYIYRKGE 172
               ++G   LV+F  +     T E +A    +  FL+Y L  I++F + +Y Y  R   
Sbjct: 145 CGLAIVGTYLLVTFAPNSHEKMTGENIARHLVSWPFLLYMLVAIVLFCLLLYFYKERNAN 204

Query: 173 NLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYS 232
           +++ +                 ++   +GS +V+  K++S +L L++    QL     Y 
Sbjct: 205 SIVVIL----------------LLVALLGSMTVVTVKAVSGMLVLSIQGNLQLDYPIFYV 248

Query: 233 MLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRAT 292
           M +   +TA +    L+E   ++D+ LI  +  I  T+ +I  G +++ ++   +AL   
Sbjct: 249 MFVCMVATAIYQATFLSEASQIYDSSLIASVGYILSTTAAITAGAIFYLDFLGEEALHIC 308

Query: 293 MFILGTASVFIGISLLAPDESKG 315
           MF LG    F+G+ L+  +  K 
Sbjct: 309 MFALGCLIAFLGVFLITRNRKKA 331

Mus musculus (taxid: 10090)

>sp|Q8BZF2|NIPA4_MOUSE Magnesium transporter NIPA4 OS=Mus musculus GN=Nipal4 PE=1 SV=1

 Score = 61.6 bits (148), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/316 (20%), Positives = 127/316 (40%), Gaps = 39/316 (12%)

Query: 58  WRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAF 117
           W  G+     G   NF ++ +A  +++  LG++  + +  FS +   + + +   +    
Sbjct: 107 WWAGMATMSAGEVANFGAYAFAPATVVTPLGALSVLISAIFSSYCLGESLNLLGKLGCVI 166

Query: 118 IVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVY-------CLILIFIVAIYHYIYRK 170
            + G+  +V     +  V T  ++A K  +  F+V+       CLILIFIVA  +     
Sbjct: 167 CMAGSTVMVIHAPKEEKVTTVAEMASKMKDTGFIVFAVLLVVSCLILIFIVAPRY----- 221

Query: 171 GENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFT 230
                   GQ N    +L+   Y I+   +GSFSV   K L   +R        +     
Sbjct: 222 --------GQRN----ILI---YIIICSVIGSFSVTAVKGLGVTIRNFFQGLPVVRHPLP 266

Query: 231 YSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALR 290
           Y + L+   +    +  LN  L +F+  L+ P++ + +T+  + +  V F+E+    A+ 
Sbjct: 267 YILSLILGLSIIIQVNFLNRALDIFNTSLVFPIYYVFFTTVVVASSIVLFKEWYTMSAVD 326

Query: 291 ATMFILGTASVFIGISLL------------APDESKGGEVKDDSSLVSVMSSSISTEVDR 338
               + G  ++ +G+ +L             P   K            +     +  VD 
Sbjct: 327 IVGTLSGFVTIILGVFMLHAFKDLDINQISLPHTHKNPTPAPAPEPTVIKLEDKNVLVDN 386

Query: 339 LILPSEDAQSKEPKPF 354
           + L S  +  ++PK F
Sbjct: 387 IELASTPSPQQKPKVF 402

Acts as a Mg(2+) transporter. Can also transport other divalent cations such as Ba(2+), Mn(2+), Sr(2+) and Co(2+) but to a much less extent than Mg(2+). May be a receptor for ligands (trioxilins A3 and B3) from the hepoxilin pathway.

Mus musculus (taxid: 10090)

>sp|Q3SWX0|NIPA2_BOVIN Magnesium transporter NIPA2 OS=Bos taurus GN=NIPA2 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 110/259 (42%), Gaps = 29/259 (11%)

Query: 58  WRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQ-FVSNIAFSYFVFNKMVTVKVLVATA 116
           W  G+L    G   NF ++ +A  +L+  LG++   VS I  SYF+ N+ + +   +   
Sbjct: 59  WWAGLLSMGAGEVANFAAYAFAPATLVTPLGALSVLVSAILSSYFL-NERLNLHGKIGCL 117

Query: 117 FIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYC-------LILIFIVAIYHYIYR 169
             +LG+  +V     +  + T  +++ K  +  F+V+        LILIF+V   H    
Sbjct: 118 LSILGSTVMVIHAPKEEEIETLNEMSHKLGDPGFVVFATLVVIVSLILIFVVGPRH---- 173

Query: 170 KGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWF 229
                    GQ N          Y  +   +G+ SV  AK L   ++   +    L    
Sbjct: 174 ---------GQTN-------ILVYITICSVIGAVSVSCAKGLGIAIKELFAGKPVLQHPL 217

Query: 230 TYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDAL 289
           T+ +LL         +  LN  L +F+  ++ P++ + +T+  I    + F+E+Q     
Sbjct: 218 TWILLLSLIVCVSTQINYLNRALDIFNTSIVTPIYYVFFTTSVITCSAILFKEWQDMPVD 277

Query: 290 RATMFILGTASVFIGISLL 308
                + G  ++ +GI LL
Sbjct: 278 DVIGTLSGFFTIIVGIFLL 296

Acts as a selective Mg(2+) transporter.

Bos taurus (taxid: 9913)

>sp|Q0D2K0|NIPA4_HUMAN Magnesium transporter NIPA4 OS=Homo sapiens GN=NIPAL4 PE=1 SV=3

 Score = 58.5 bits (140), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 116/263 (44%), Gaps = 37/263 (14%)

Query: 58  WRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQ-FVSNIAFSYFVFNKMVTVKVLVATA 116
           W  G L    G   NF ++ +A  +++  LG++   +S I  SYF+   +  +  L    
Sbjct: 167 WWAGFLTMAAGEVANFGAYAFAPATVVTPLGALSVLISAILSSYFLRESLNLLGKL-GCV 225

Query: 117 FIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVY-------CLILIFIVAIYHYIYR 169
             V G+  +V     +  V T  ++A K  +  F+V+       CLILIF++A  +    
Sbjct: 226 ICVAGSTVMVIHAPEEEKVTTIMEMASKMKDTGFIVFAVLLLVSCLILIFVIAPRY---- 281

Query: 170 KGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQ----L 225
                    GQ N    +L+   Y I+   +G+FSV   K L     + + N +Q    +
Sbjct: 282 ---------GQRN----ILI---YIIICSVIGAFSVAAVKGLG----ITIKNFFQGLPVV 321

Query: 226 HSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQV 285
                Y + L+   +    +  LN  L +F+  L+ P++ + +T+  + +  + F+E+  
Sbjct: 322 RHPLPYILSLILALSLSTQVNFLNRALDIFNTSLVFPIYYVFFTTVVVTSSIILFKEWYS 381

Query: 286 FDALRATMFILGTASVFIGISLL 308
             A+     + G  ++ +G+ +L
Sbjct: 382 MSAVDIAGTLSGFVTIILGVFML 404

Acts as a Mg(2+) transporter. Can also transport other divalent cations such as Ba(2+), Mn(2+), Sr(2+) and Co(2+) but to a much less extent than Mg(2+) (By similarity). May be a receptor for ligands (trioxilins A3 and B3) from the hepoxilin pathway.

Homo sapiens (taxid: 9606)

>sp|Q5R7Q3|NIPA2_PONAB Magnesium transporter NIPA2 OS=Pongo abelii GN=NIPA2 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 109/259 (42%), Gaps = 29/259 (11%)

Query: 58  WRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQ-FVSNIAFSYFVFNKMVTVKVLVATA 116
           W  G+L    G   NF ++ +A  +L+  LG++   VS I  SYF+ N+ + +   +   
Sbjct: 59  WWAGLLSMGAGEVANFAAYAFAPATLVTPLGALSVLVSAILSSYFL-NERLNLHGKIGCL 117

Query: 117 FIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVY-------CLILIFIVAIYHYIYR 169
             +LG+  +V     +  + T  +++ K  +  F+V+        LILIF+V   H    
Sbjct: 118 LSILGSTVMVIHAPKEEEIETLNEMSHKLGDPGFVVFATLVVIVALILIFVVGPRH---- 173

Query: 170 KGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWF 229
                    GQ N          Y  +   +G+FSV   K L   ++   +    L    
Sbjct: 174 ---------GQTN-------ILVYITICSVIGAFSVSCVKGLGIAIKELFAGKPVLRHPL 217

Query: 230 TYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDAL 289
            + +LL         +  LN  L +F+  ++ P++ + +T+  +    + F+E+Q     
Sbjct: 218 AWILLLSLIVCVSTQINYLNRALDIFNTSIVTPIYYVFFTTSVLTCSAILFKEWQDMPVD 277

Query: 290 RATMFILGTASVFIGISLL 308
                + G  ++ +GI LL
Sbjct: 278 DVIGTLSGFFTIIVGIFLL 296

Acts as a selective Mg(2+) transporter.

Pongo abelii (taxid: 9601)

>sp|Q8N8Q9|NIPA2_HUMAN Magnesium transporter NIPA2 OS=Homo sapiens GN=NIPA2 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 109/259 (42%), Gaps = 29/259 (11%)

Query: 58  WRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQ-FVSNIAFSYFVFNKMVTVKVLVATA 116
           W  G+L    G   NF ++ +A  +L+  LG++   VS I  SYF+ N+ + +   +   
Sbjct: 59  WWAGLLSMGAGEVANFAAYAFAPATLVTPLGALSVLVSAILSSYFL-NERLNLHGKIGCL 117

Query: 117 FIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVY-------CLILIFIVAIYHYIYR 169
             +LG+  +V     +  + T  +++ K  +  F+V+        LILIF+V   H    
Sbjct: 118 LSILGSTVMVIHAPKEEEIETLNEMSHKLGDPGFVVFATLVVIVALILIFVVGPRH---- 173

Query: 170 KGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWF 229
                    GQ N          Y  +   +G+FSV   K L   ++   +    L    
Sbjct: 174 ---------GQTN-------ILVYITICSVIGAFSVSCVKGLGIAIKELFAGKPVLRHPL 217

Query: 230 TYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDAL 289
            + +LL         +  LN  L +F+  ++ P++ + +T+  +    + F+E+Q     
Sbjct: 218 AWILLLSLIVCVSTQINYLNRALDIFNTSIVTPIYYVFFTTSVLTCSAILFKEWQDMPVD 277

Query: 290 RATMFILGTASVFIGISLL 308
                + G  ++ +GI LL
Sbjct: 278 DVIGTLSGFFTIIVGIFLL 296

Acts as a selective Mg(2+) transporter.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	445
224128700	444	predicted protein [Populus trichocarpa]	0.993	0.995	0.788	0.0
255543473	1198	pentatricopeptide repeat-containing prot	0.970	0.360	0.8	0.0
359488543	1154	PREDICTED: uncharacterized protein LOC10	0.991	0.382	0.761	0.0
296082240	442	unnamed protein product [Vitis vinifera]	0.986	0.993	0.760	0.0
356498637	441	PREDICTED: uncharacterized protein LOC10	0.988	0.997	0.744	0.0
388515427	442	unknown [Lotus japonicus]	0.991	0.997	0.748	0.0
356559514	443	PREDICTED: uncharacterized protein LOC10	0.988	0.993	0.741	0.0
449520012	444	PREDICTED: uncharacterized LOC101223129	0.984	0.986	0.727	0.0
297818206	441	hypothetical protein ARALYDRAFT_484434 [	0.973	0.981	0.730	0.0
449455764	443	PREDICTED: uncharacterized protein LOC10	0.982	0.986	0.727	0.0

>gi|224128700|ref|XP_002320397.1| predicted protein [Populus trichocarpa] gi|222861170|gb|EEE98712.1| predicted protein [Populus trichocarpa]

 Score =  725 bits (1871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/445 (78%), Positives = 398/445 (89%), Gaps = 3/445 (0%)

Query: 1   MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRV 60
           MGEWVIGAFINL GSIAINFGTNLLKLGH ERE+HST D+ GT+GK  +KPI+++ +WRV
Sbjct: 1   MGEWVIGAFINLFGSIAINFGTNLLKLGHNERERHSTQDNVGTSGKVPVKPIIYFQTWRV 60

Query: 61  GILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVL 120
           GIL F LGNCLNFISFGYAAQSLLAALGS+QFVSNIAF+YFV NKMVTVKVLVATAFIVL
Sbjct: 61  GILFFFLGNCLNFISFGYAAQSLLAALGSIQFVSNIAFAYFVLNKMVTVKVLVATAFIVL 120

Query: 121 GNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQ 180
           GNIFLV+FGNHQSPVYTPEQLAEKYSN+TFL YCL+LI +VA++HYIYR+GE +LA+SGQ
Sbjct: 121 GNIFLVAFGNHQSPVYTPEQLAEKYSNMTFLFYCLVLILLVALHHYIYRRGEIILAISGQ 180

Query: 181 DNR-YWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFS 239
           D R YW+MLLPFSYA+VSGAVGS SVLFAKSLSNLLRLAMS+ YQLHSWFTYS+LLLF S
Sbjct: 181 DLRPYWQMLLPFSYAVVSGAVGSCSVLFAKSLSNLLRLAMSSDYQLHSWFTYSILLLFLS 240

Query: 240 TAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTA 299
           TAGFWM RLNEGL+LFDAILIVPMFQI WT FSICTGFVYFQEYQVFDALR TMFILG  
Sbjct: 241 TAGFWMTRLNEGLALFDAILIVPMFQIVWTFFSICTGFVYFQEYQVFDALRTTMFILGMT 300

Query: 300 SVFIGISLLAPDESKGGEVKDDSSLVSVMSSSISTEVDRLILPSEDAQSKEPKPFVQGMS 359
           SVF+GISLLAPDES+GGEVKD++SLV V+SSSIS E DRL++ SEDAQ+K+P+ F Q M 
Sbjct: 301 SVFVGISLLAPDESRGGEVKDNASLVPVVSSSISIETDRLVISSEDAQNKDPRSFAQAMV 360

Query: 360 MKISDMMAKAKTACSMSLGLGEDSINASAVLVMPMVSSKINGFRGNRFDRAKLFNVKNSG 419
           +KI +++AKAKTACS+SLG GEDSINASAVLVMPMVSSKI GFRG  FDR K F+++NSG
Sbjct: 361 IKIKEVLAKAKTACSLSLGFGEDSINASAVLVMPMVSSKITGFRGTVFDRPKFFSLRNSG 420

Query: 420 SDWSGISIDEDGAKLLETSAGLPPS 444
             WS IS+D+DG  +LET+  LP +
Sbjct: 421 --WSKISMDDDGVNVLETNPVLPQT 443

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543473|ref|XP_002512799.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223547810|gb|EEF49302.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/435 (80%), Positives = 393/435 (90%), Gaps = 3/435 (0%)

Query: 1   MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRV 60
           MGEWVIGAFINL GSIAINFGTNLLKLGH ERE+HSTLD+DG +GK  LKPI+H+ +WR+
Sbjct: 1   MGEWVIGAFINLFGSIAINFGTNLLKLGHTERERHSTLDNDGASGKSHLKPIIHFQTWRI 60

Query: 61  GILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVL 120
           GI+ F LGNCLNFISFGYAAQSLLAALGSVQFVSNIAF+YFV +KMVTVKVLVATAFIVL
Sbjct: 61  GIIFFFLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFAYFVLHKMVTVKVLVATAFIVL 120

Query: 121 GNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQ 180
           GN+FLV+FGNHQSPVYTPEQLAEKYSN+TFL+YC+ILI +VA++HY+YR+GE L A+SGQ
Sbjct: 121 GNVFLVAFGNHQSPVYTPEQLAEKYSNMTFLLYCMILILVVALHHYLYRRGEILAAISGQ 180

Query: 181 DNR-YWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFS 239
           D R YW+MLLPFSYA+VSGAVGS SVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLF S
Sbjct: 181 DLRPYWQMLLPFSYAVVSGAVGSCSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFLS 240

Query: 240 TAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTA 299
           TAGFWM RLNEGLSLFDAI+IVPMFQI WT FSICTGFVYFQEYQVFDALR TMFILG  
Sbjct: 241 TAGFWMTRLNEGLSLFDAIVIVPMFQIVWTFFSICTGFVYFQEYQVFDALRTTMFILGMM 300

Query: 300 SVFIGISLLAPDESKGGEVKDDSSLVSVMSSSISTEVDRLILPSEDAQSKEPKPFVQGMS 359
            VFIGISLLAPDE +GGE KD++SLVSV+SSS+S+E DRLI P+EDAQ+K+P+  VQG  
Sbjct: 301 CVFIGISLLAPDEPRGGEGKDNASLVSVVSSSVSSESDRLIKPAEDAQNKDPRTLVQGTM 360

Query: 360 MKISDMMAKAKTACSMSLGLGEDSINASAVLVMPMVSSKINGFRGNRFDRAKLFNVKNSG 419
            K+ +++AKAK ACS+SLG GEDSINASAVLVMPMVSSK+ GFRG+ FDR K+F++KNSG
Sbjct: 361 AKVMELIAKAKAACSISLGFGEDSINASAVLVMPMVSSKMTGFRGSVFDRPKIFSLKNSG 420

Query: 420 SDWSGISIDEDGAKL 434
             WS IS+DEDG KL
Sbjct: 421 --WSKISMDEDGVKL 433

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488543|ref|XP_002278038.2| PREDICTED: uncharacterized protein LOC100244618 [Vitis vinifera]

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/444 (76%), Positives = 380/444 (85%), Gaps = 3/444 (0%)

Query: 1   MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRV 60
           MGEWV+GA IN+ GSIAINFGTNLLKLGH ER +   LD++G NGK   KPI+++ +WRV
Sbjct: 1   MGEWVVGAIINVFGSIAINFGTNLLKLGHNERGRSLLLDNNGANGKLVPKPIIYFQTWRV 60

Query: 61  GILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVL 120
           G+L F LGNCLNFISFGYAAQSLLAALGS+QFVSNIAF+YFV NKMV+VKVLVATAFIVL
Sbjct: 61  GLLFFSLGNCLNFISFGYAAQSLLAALGSIQFVSNIAFAYFVLNKMVSVKVLVATAFIVL 120

Query: 121 GNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQ 180
           GNIFLV+FGNHQSPV+TPEQLAEK+SN TFLVYCLILI +VA+ HYIYR+GE   A+SGQ
Sbjct: 121 GNIFLVAFGNHQSPVFTPEQLAEKFSNATFLVYCLILILVVALNHYIYRRGEMQFAISGQ 180

Query: 181 D-NRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFS 239
           D   YW MLLPFSYA VSGAVGS SVLFAKSLSNLLRLAMS+GYQLHSWFTYSMLL F S
Sbjct: 181 DLEPYWHMLLPFSYATVSGAVGSCSVLFAKSLSNLLRLAMSSGYQLHSWFTYSMLLCFLS 240

Query: 240 TAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTA 299
           TAGFWMARLNEGLSLFDAILIVPMFQIAWT FSICTGFVYFQEYQVFD LR TMFILG  
Sbjct: 241 TAGFWMARLNEGLSLFDAILIVPMFQIAWTFFSICTGFVYFQEYQVFDTLRTTMFILGMM 300

Query: 300 SVFIGISLLAPDESKGGEVKDDSSLVSVMSSSISTEVDRLILPSEDAQSKEPKPFVQGMS 359
           SVFIGISLLAPDE KGGE KD+S+L S+ SSS  T+ DRLI PSEDAQ+++P+  +Q M 
Sbjct: 301 SVFIGISLLAPDEPKGGETKDNSTLASITSSSTPTDTDRLITPSEDAQTQDPRSRMQAML 360

Query: 360 MKISDMMAKAKTACSMSLGLGEDSINASAVLVMPMVSSKINGFRGNRFDRAKLFNVKNSG 419
           MK ++ + KAK ACS+SLG GEDSINASA LVMPMVSSKI GFRG+  D  +LF++KN G
Sbjct: 361 MKATEAIVKAKAACSLSLGFGEDSINASAGLVMPMVSSKITGFRGSSPDGGRLFSLKNPG 420

Query: 420 SDWSGISIDEDGAKLLETSAGLPP 443
             W+ IS+DEDGAK+L+TS   PP
Sbjct: 421 --WTKISMDEDGAKMLDTSIDPPP 442

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082240|emb|CBI21245.3| unnamed protein product [Vitis vinifera]

 Score =  685 bits (1768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/442 (76%), Positives = 380/442 (85%), Gaps = 3/442 (0%)

Query: 1   MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRV 60
           MGEWV+GA IN+ GSIAINFGTNLLKLGH ER +   LD++G NGK   KPI+++ +WRV
Sbjct: 1   MGEWVVGAIINVFGSIAINFGTNLLKLGHNERGRSLLLDNNGANGKLVPKPIIYFQTWRV 60

Query: 61  GILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVL 120
           G+L F LGNCLNFISFGYAAQSLLAALGS+QFVSNIAF+YFV NKMV+VKVLVATAFIVL
Sbjct: 61  GLLFFSLGNCLNFISFGYAAQSLLAALGSIQFVSNIAFAYFVLNKMVSVKVLVATAFIVL 120

Query: 121 GNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQ 180
           GNIFLV+FGNHQSPV+TPEQLAEK+SN TFLVYCLILI +VA+ HYIYR+GE   A+SGQ
Sbjct: 121 GNIFLVAFGNHQSPVFTPEQLAEKFSNATFLVYCLILILVVALNHYIYRRGEMQFAISGQ 180

Query: 181 D-NRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFS 239
           D   YW MLLPFSYA VSGAVGS SVLFAKSLSNLLRLAMS+GYQLHSWFTYSMLL F S
Sbjct: 181 DLEPYWHMLLPFSYATVSGAVGSCSVLFAKSLSNLLRLAMSSGYQLHSWFTYSMLLCFLS 240

Query: 240 TAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTA 299
           TAGFWMARLNEGLSLFDAILIVPMFQIAWT FSICTGFVYFQEYQVFD LR TMFILG  
Sbjct: 241 TAGFWMARLNEGLSLFDAILIVPMFQIAWTFFSICTGFVYFQEYQVFDTLRTTMFILGMM 300

Query: 300 SVFIGISLLAPDESKGGEVKDDSSLVSVMSSSISTEVDRLILPSEDAQSKEPKPFVQGMS 359
           SVFIGISLLAPDE KGGE KD+S+L S+ SSS  T+ DRLI PSEDAQ+++P+  +Q M 
Sbjct: 301 SVFIGISLLAPDEPKGGETKDNSTLASITSSSTPTDTDRLITPSEDAQTQDPRSRMQAML 360

Query: 360 MKISDMMAKAKTACSMSLGLGEDSINASAVLVMPMVSSKINGFRGNRFDRAKLFNVKNSG 419
           MK ++ + KAK ACS+SLG GEDSINASA LVMPMVSSKI GFRG+  D  +LF++KN G
Sbjct: 361 MKATEAIVKAKAACSLSLGFGEDSINASAGLVMPMVSSKITGFRGSSPDGGRLFSLKNPG 420

Query: 420 SDWSGISIDEDGAKLLETSAGL 441
             W+ IS+DEDGAK+L+TS+ +
Sbjct: 421 --WTKISMDEDGAKMLDTSSSM 440

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498637|ref|XP_003518156.1| PREDICTED: uncharacterized protein LOC100778788 [Glycine max]

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/446 (74%), Positives = 387/446 (86%), Gaps = 6/446 (1%)

Query: 1   MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRV 60
           MGEW++GAFINL GSIAINFGTNLLKLGH ERE+H  L SDG NGK +LKPI+++ SWR+
Sbjct: 1   MGEWIVGAFINLFGSIAINFGTNLLKLGHNERERH-LLGSDGVNGKMNLKPIIYFQSWRI 59

Query: 61  GILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVL 120
           GI+ F LGNCLNFISFGYAAQSLLAALGSVQFVSNIAF+YFV NKMVTVKVLVATAFIVL
Sbjct: 60  GIVFFFLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFAYFVLNKMVTVKVLVATAFIVL 119

Query: 121 GNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQ 180
           GN+FLV+FGNHQSPVYTPEQL EKY+NI+FL+Y L LI IVA++H IY++GE LL VSG 
Sbjct: 120 GNVFLVAFGNHQSPVYTPEQLTEKYTNISFLLYLLALISIVALHHSIYKRGELLLGVSGH 179

Query: 181 DNR-YWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFS 239
           D R YW MLLPFSYA+VSGAVGS SVLFAKSLSNLLRLA+SNGYQLHSWFTYSMLLLF S
Sbjct: 180 DLRPYWSMLLPFSYAVVSGAVGSCSVLFAKSLSNLLRLALSNGYQLHSWFTYSMLLLFLS 239

Query: 240 TAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTA 299
           TAGFWM RLNEGLSLFDAILIVPMFQIAWT FSICTGF+YFQEYQVFDALR TMF+LG  
Sbjct: 240 TAGFWMTRLNEGLSLFDAILIVPMFQIAWTLFSICTGFIYFQEYQVFDALRTTMFMLGMM 299

Query: 300 SVFIGISLLAPDESKGGEVKDDSSLVSVMSSSISTEVDRLILPSEDAQSKEPKPFVQGMS 359
            VFIGISLLAPDESKG E K DSSL S++SS+ISTE +RL++  E+AQ+K+ +  V+ + 
Sbjct: 300 CVFIGISLLAPDESKGPETK-DSSLDSMVSSAISTEANRLVVSPEEAQNKDTRSLVKAIL 358

Query: 360 MKISDMMAKAKTACSMSLGLGEDSINASAVLVMPMVSSKINGFRGNRFDRAKLFNVKNSG 419
           +KI+D++ KAKT C++SLG GED+INAS+VLVMPM+SS++ GFRGN  +RA++ +++N  
Sbjct: 359 IKITDLLVKAKTTCALSLGFGEDTINASSVLVMPMMSSRMTGFRGNGLERARILSMRNG- 417

Query: 420 SDWSGISIDEDGAKLLETSAGLPPSP 445
             W  I +DED  KLLETS+ +PPSP
Sbjct: 418 --WRKIPMDEDAGKLLETSSVVPPSP 441

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388515427|gb|AFK45775.1| unknown [Lotus japonicus]

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/446 (74%), Positives = 383/446 (85%), Gaps = 5/446 (1%)

Query: 1   MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRV 60
           MGEW++GAFINL GSIAINFGTNLLKLGH ERE+H  L SDG NGK +LKPI+ + SWR+
Sbjct: 1   MGEWIVGAFINLFGSIAINFGTNLLKLGHNERERH-VLGSDGLNGKMTLKPIISFQSWRI 59

Query: 61  GILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVL 120
           GIL F LGNCLNFISFGYAAQSLLAALGSVQFVSNIAF+YFV NKMVTVKVLVATAFIVL
Sbjct: 60  GILFFFLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFAYFVLNKMVTVKVLVATAFIVL 119

Query: 121 GNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQ 180
           GNIFLV+FGNHQSPV+TPEQL EKY+N+ FL+Y L LI IVA++H  Y++GE LLAVSG 
Sbjct: 120 GNIFLVAFGNHQSPVFTPEQLTEKYTNVAFLLYLLALIVIVALHHSGYKRGELLLAVSGH 179

Query: 181 DNR-YWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFS 239
           D R YW MLLPFSYA+VSGAVGS SVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLF S
Sbjct: 180 DLRPYWNMLLPFSYAVVSGAVGSCSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFLS 239

Query: 240 TAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTA 299
           TAGFWM RLNEGL+LFDAILIVPMFQIAWT FSICTGF+YFQEY VFDALR TMFILG  
Sbjct: 240 TAGFWMTRLNEGLALFDAILIVPMFQIAWTLFSICTGFIYFQEYLVFDALRTTMFILGMM 299

Query: 300 SVFIGISLLAPDESKGGEVKDDSSLVSVMSSSISTEVDRLILPSEDAQSKEPKPFVQGMS 359
            VF+GISLLAPDESKG E K DSSL S++S +IS E  RL++ SE+AQ++E + FV+GM 
Sbjct: 300 CVFLGISLLAPDESKGAETK-DSSLDSMVSPAISIEAKRLVVSSEEAQNRETRSFVKGMR 358

Query: 360 MKISDMMAKAKTACSMSLGLGEDSINASAVLVMPMVSSKINGFRGNRFDRAKLFNVKNSG 419
           +KI+DM+A+AK + ++S G GEDSINAS+VLVMPM+SS+I GFRG   DR+++ +++N G
Sbjct: 359 IKITDMLAQAKASFALSFGFGEDSINASSVLVMPMMSSRITGFRGTGIDRSRMLSMRNYG 418

Query: 420 SDWSGISIDEDGAKLLETSAGLPPSP 445
             WS I +DED  KLLETS  +PPSP
Sbjct: 419 --WSKIPMDEDAGKLLETSQIVPPSP 442

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559514|ref|XP_003548044.1| PREDICTED: uncharacterized protein LOC100812264 [Glycine max]

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/448 (74%), Positives = 386/448 (86%), Gaps = 8/448 (1%)

Query: 1   MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRV 60
           MGEW++GAFINL GSIAINFGTNLLKLGH ERE+H  L SDG NGK +LKPI+++ SWR+
Sbjct: 1   MGEWIVGAFINLFGSIAINFGTNLLKLGHNERERH-LLGSDGVNGKMNLKPIIYFQSWRI 59

Query: 61  GILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVL 120
           GI+ F LGNCLNFISFGYAAQSLLAALGSVQFVSNIAF+YFV NKMVTVKVLVATAFIVL
Sbjct: 60  GIVFFFLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFAYFVLNKMVTVKVLVATAFIVL 119

Query: 121 GNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQ 180
           GN+FLV+FGNHQSPVYTPEQL EKY+NI FL+Y L LI IVA++H IY++GE L AVSG 
Sbjct: 120 GNVFLVAFGNHQSPVYTPEQLTEKYTNIAFLLYLLALISIVALHHSIYKRGELLFAVSGH 179

Query: 181 DNR-YWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFS 239
           D R YW MLLPFSYA+VSGAVGS SVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLF S
Sbjct: 180 DLRPYWSMLLPFSYAVVSGAVGSCSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFLS 239

Query: 240 TAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTA 299
           TAGFWM RLNEGLSLFDAILIVPMFQI WT FSICTGF+YFQEYQVFDALR TMFILG  
Sbjct: 240 TAGFWMTRLNEGLSLFDAILIVPMFQITWTFFSICTGFIYFQEYQVFDALRTTMFILGMM 299

Query: 300 SVFIGISLLAPDESK--GGEVKDDSSLVSVMSSSISTEVDRLILPSEDAQSKEPKPFVQG 357
            VFIGISLLAPDESK  G E K DSSL S++SS++STE  RL++  E+AQ+K+ + FV+ 
Sbjct: 300 CVFIGISLLAPDESKVSGPETK-DSSLDSMVSSAMSTETSRLVVSPEEAQNKDSRSFVKA 358

Query: 358 MSMKISDMMAKAKTACSMSLGLGEDSINASAVLVMPMVSSKINGFRGNRFDRAKLFNVKN 417
           + +K++D++ KAKT+C++SLG GED+IN S+VLVMPM+SS++ GFRGN  +RA++ +++N
Sbjct: 359 ILIKVTDLLVKAKTSCALSLGFGEDTINTSSVLVMPMMSSRMTGFRGNGLERARILSMRN 418

Query: 418 SGSDWSGISIDEDGAKLLETSAGLPPSP 445
               WS I +DED  KLLETS+ +PPSP
Sbjct: 419 G---WSKIPMDEDAGKLLETSSVVPPSP 443

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520012|ref|XP_004167028.1| PREDICTED: uncharacterized LOC101223129 [Cucumis sativus]

 Score =  649 bits (1674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/441 (72%), Positives = 384/441 (87%), Gaps = 3/441 (0%)

Query: 1   MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRV 60
           MGEWVIGA INL GS+AINFGTNLLKLGH EREKHS L+++G+ GK  +KPI+++ +WRV
Sbjct: 1   MGEWVIGAVINLFGSLAINFGTNLLKLGHNEREKHSMLENNGSIGKTPMKPIIYFQTWRV 60

Query: 61  GILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVL 120
           GI  F++GNCLNFISFGYAAQSLLAALGSVQFVSNIAF+YFV +KMVTVKV+VATAFIVL
Sbjct: 61  GITFFIIGNCLNFISFGYAAQSLLAALGSVQFVSNIAFAYFVLHKMVTVKVMVATAFIVL 120

Query: 121 GNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQ 180
           GN+FLV+FGNHQSPVYTPEQL EKY NITFL+YC+ILI +VA++H IYR+GE LL+VSGQ
Sbjct: 121 GNVFLVAFGNHQSPVYTPEQLVEKYGNITFLLYCVILILVVALHHSIYRRGELLLSVSGQ 180

Query: 181 DNR-YWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFS 239
           D R YW MLLPFSYAIVSGA+GS SVLFAKSLS LLRLAMS+ YQLHSWFTYS+LLLF S
Sbjct: 181 DLRPYWHMLLPFSYAIVSGAIGSCSVLFAKSLSILLRLAMSSDYQLHSWFTYSLLLLFLS 240

Query: 240 TAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTA 299
           TAGFWMARLNEGLSLFDAILIVPMFQIAWT FSICTGF+YF+E+QV DALR TMFILG  
Sbjct: 241 TAGFWMARLNEGLSLFDAILIVPMFQIAWTFFSICTGFIYFKEFQVLDALRTTMFILGMM 300

Query: 300 SVFIGISLLAPDESKGGEVKDDSSLVSVMSSSISTEVDRLILPSEDAQSKEPKPFVQGMS 359
           SVFIGISLLAPDE + GE KD+SSLVS  S+S ++E +RLI+ S++ ++++ K F QG+ 
Sbjct: 301 SVFIGISLLAPDEPRDGEFKDNSSLVSGTSTSFTSEEERLIVSSKELETRDAKSFSQGVL 360

Query: 360 MKISDMMAKAKTACSMSLGLGEDSINASAVLVMPMVSSKINGFRGNRFDRAKLFNVKNSG 419
           +KI+D++AKAK A ++SLG GEDS+NASA+LVMPMVSS++ GFRG  F+R+K F+++   
Sbjct: 361 LKITDVVAKAKAALALSLGFGEDSLNASAILVMPMVSSRMTGFRGTGFERSKFFSMRK-- 418

Query: 420 SDWSGISIDEDGAKLLETSAG 440
            DWS IS+DE+  K+L+T  G
Sbjct: 419 PDWSRISLDEEDTKVLDTDIG 439

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818206|ref|XP_002876986.1| hypothetical protein ARALYDRAFT_484434 [Arabidopsis lyrata subsp. lyrata] gi|297322824|gb|EFH53245.1| hypothetical protein ARALYDRAFT_484434 [Arabidopsis lyrata subsp. lyrata]

 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/441 (73%), Positives = 380/441 (86%), Gaps = 8/441 (1%)

Query: 1   MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRV 60
           MGEWVIGAFIN+ GS+AINFGTNLLKLGH ERE+ +  D     GK  LKPI+H+ +WRV
Sbjct: 1   MGEWVIGAFINIFGSVAINFGTNLLKLGHNERERLALQDG---GGKMPLKPIIHFQTWRV 57

Query: 61  GILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVL 120
           GILVFLLGNCLNFISFGYAAQSLLAALGS+QFVSNIAF+Y V NKMVTVKVLVATAFIVL
Sbjct: 58  GILVFLLGNCLNFISFGYAAQSLLAALGSIQFVSNIAFAYVVLNKMVTVKVLVATAFIVL 117

Query: 121 GNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQ 180
           GN+FLV+FGNHQSPV+TPEQLAEKYSN+TFLVYC ILI IVA++H++YRKGE L+++ GQ
Sbjct: 118 GNVFLVAFGNHQSPVFTPEQLAEKYSNVTFLVYCGILILIVAVHHFLYRKGEVLISIPGQ 177

Query: 181 D-NRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFS 239
           + + YW+MLLPFSYA+VSGA+GS SVLFAKSLSNLLRLAMS+ YQLHSWFTYSMLLLF S
Sbjct: 178 EISSYWKMLLPFSYAVVSGAIGSCSVLFAKSLSNLLRLAMSSSYQLHSWFTYSMLLLFLS 237

Query: 240 TAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTA 299
           TAGFWM RLNEGLSL+DAILIVPMFQIAWT FSICTGF+YFQE+QVFDALR TMFILG  
Sbjct: 238 TAGFWMTRLNEGLSLYDAILIVPMFQIAWTFFSICTGFIYFQEFQVFDALRTTMFILGMM 297

Query: 300 SVFIGISLLAPDESKGGEVKDD-SSLVSVMSSSISTEVDRLI-LPSEDAQSKEPKPFVQG 357
            VFIGISLLAPD+++G E +D+ SSL S++SSS+ TE DRL+   SED  SK+ +  VQG
Sbjct: 298 CVFIGISLLAPDDTRGNETRDNSSSLDSIVSSSVPTEEDRLMPQSSEDGHSKDTRVVVQG 357

Query: 358 MSMKISDMMAKAKTACSMSLGLGEDSINASAVLVMPMVSSKINGFRGNRFDRAKLFNVKN 417
           M MK +D++AK K AC  +LG GEDSINASA+LVMPMVSSKI GFRGN  +RAK+ +++ 
Sbjct: 358 MYMKAADLIAKTKAACLAALGFGEDSINASAILVMPMVSSKITGFRGNGLERAKILSMRG 417

Query: 418 SGSDWSGISIDEDGAKLLETS 438
           SG  WS ++++E+G ++LE +
Sbjct: 418 SG--WSKLAMEEEGTRMLEKT 436

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455764|ref|XP_004145621.1| PREDICTED: uncharacterized protein LOC101223129 [Cucumis sativus]

 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/441 (72%), Positives = 385/441 (87%), Gaps = 4/441 (0%)

Query: 1   MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRV 60
           MGEWVIGA INL GS+AINFGTNLLKLGH EREKHS L+++G+ GK  +KPI+++ +WRV
Sbjct: 1   MGEWVIGAVINLFGSLAINFGTNLLKLGHNEREKHSMLENNGSIGKTPMKPIIYFQTWRV 60

Query: 61  GILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVL 120
           GI +F++GNCLNFISFGYAAQSLLAALGSVQFVSNIAF+YFV +KMVTVKV+VATAFIVL
Sbjct: 61  GI-IFIIGNCLNFISFGYAAQSLLAALGSVQFVSNIAFAYFVLHKMVTVKVMVATAFIVL 119

Query: 121 GNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQ 180
           GN+FLV+FGNHQSPVYTPEQL EKY NITFL+YC+ILI +VA++H IYR+GE LL+VSGQ
Sbjct: 120 GNVFLVAFGNHQSPVYTPEQLVEKYGNITFLLYCVILILVVALHHSIYRRGELLLSVSGQ 179

Query: 181 DNR-YWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFS 239
           D R YW MLLPFSYAIVSGA+GS SVLFAKSLS LLRLAMS+ YQLHSWFTYS+LLLF S
Sbjct: 180 DLRPYWHMLLPFSYAIVSGAIGSCSVLFAKSLSILLRLAMSSDYQLHSWFTYSLLLLFLS 239

Query: 240 TAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTA 299
           TAGFWMARLNEGLSLFDAILIVPMFQIAWT FSICTGF+YF+E+QV DALR TMFILG  
Sbjct: 240 TAGFWMARLNEGLSLFDAILIVPMFQIAWTFFSICTGFIYFKEFQVLDALRTTMFILGMM 299

Query: 300 SVFIGISLLAPDESKGGEVKDDSSLVSVMSSSISTEVDRLILPSEDAQSKEPKPFVQGMS 359
           SVFIGISLLAPDE + GE KD+SSLVS  S+S ++E +RLI+ S++ ++++ K F QG+ 
Sbjct: 300 SVFIGISLLAPDEPRDGEFKDNSSLVSGTSTSFTSEEERLIVSSKELETRDAKSFSQGVL 359

Query: 360 MKISDMMAKAKTACSMSLGLGEDSINASAVLVMPMVSSKINGFRGNRFDRAKLFNVKNSG 419
           +KI+D++AKAK A ++SLG GEDS+NASA+LVMPMVSS++ GFRG  F+R+K F+++   
Sbjct: 360 LKITDVVAKAKAALALSLGFGEDSLNASAILVMPMVSSRMTGFRGTGFERSKFFSMRK-- 417

Query: 420 SDWSGISIDEDGAKLLETSAG 440
            DWS IS+DE+  K+L+T  G
Sbjct: 418 PDWSRISLDEEDTKVLDTDIG 438

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	445
TAIR|locus:2090822	441	AT3G26670 "AT3G26670" [Arabido	0.968	0.977	0.708	1.9e-163
ZFIN|ZDB-GENE-040718-379	387	nipal3 "NIPA-like domain conta	0.635	0.731	0.260	1.2e-18
UNIPROTKB|F1NBN3	339	NPAL2 "Uncharacterized protein	0.566	0.743	0.255	1.6e-18
MGI|MGI:1921802	410	Nipal3 "NIPA-like domain conta	0.640	0.695	0.246	2e-15
UNIPROTKB|E2REQ4	406	NIPAL3 "Uncharacterized protei	0.638	0.699	0.235	4.3e-15
UNIPROTKB|E1BLE7	406	NIPAL3 "Uncharacterized protei	0.638	0.699	0.235	5.5e-15
UNIPROTKB|E1BR96	408	NIPAL3 "Uncharacterized protei	0.640	0.698	0.236	9.6e-15
UNIPROTKB|A6NN97	368	NIPAL3 "Uncharacterized protei	0.638	0.771	0.232	1.4e-14
RGD|1564315	383	Nipal2 "NIPA-like domain conta	0.568	0.660	0.228	1.7e-14
TAIR|locus:2076186	335	AT3G23870 "AT3G23870" [Arabido	0.550	0.731	0.197	2e-14

TAIR|locus:2090822 AT3G26670 "AT3G26670" [Arabidopsis thaliana (taxid:3702)]

 Score = 1591 (565.1 bits), Expect = 1.9e-163, P = 1.9e-163
 Identities = 311/439 (70%), Positives = 362/439 (82%)

Query:     1 MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRV 60
             MGEWVIGAFIN+ GS+AINFGTNLLKLGH ERE+ +    DG  GK  LKPI+H  +WRV
Sbjct:     1 MGEWVIGAFINIFGSVAINFGTNLLKLGHNERERLAL--QDG-GGKMPLKPIIHNQTWRV 57

Query:    61 GILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVL 120
             GILVFLLGNCLNFISFGYAAQSLLAALGS+QFVSNIAF+Y V NKMVTVKVLVATAFIVL
Sbjct:    58 GILVFLLGNCLNFISFGYAAQSLLAALGSIQFVSNIAFAYVVLNKMVTVKVLVATAFIVL 117

Query:   121 GNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQ 180
             GN+FLV+FGNHQSPV+TPEQLAEKYSN+TFLVYC ILI IVA++H++YRKGE L++  GQ
Sbjct:   118 GNVFLVAFGNHQSPVFTPEQLAEKYSNVTFLVYCGILILIVAVHHFLYRKGEVLISTPGQ 177

Query:   181 D-NRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFS 239
             + + YW+MLLPFSYA+VSGA+GS SVLFAKSLSNLLRLAMS+ YQLHSWFTYSMLLLF S
Sbjct:   178 EISSYWKMLLPFSYAVVSGAIGSCSVLFAKSLSNLLRLAMSSSYQLHSWFTYSMLLLFLS 237

Query:   240 TAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTA 299
             TAGFWM RLNEGLSL+DAILIVPMFQIAWT FSICTG +YFQE+QVFDALR TMFILG  
Sbjct:   238 TAGFWMTRLNEGLSLYDAILIVPMFQIAWTFFSICTGCIYFQEFQVFDALRTTMFILGMM 297

Query:   300 SVFIGISLLAPDESKGGEXXXXXXXXXXXXXXXXXXXXRLILP--SEDAQSKEPKPFVQG 357
              VFIGISLLAPD+++G E                      ++P  SED  SK+ +  VQG
Sbjct:   298 CVFIGISLLAPDDTRGNETKDNSSSLDSIVSSSVPTEEDRLIPQSSEDGHSKDTRVVVQG 357

Query:   358 MSMKISDMMAKAKTACSMSLGLGEDSINASAVLVMPMVSSKINGFRGNRFDRAKLFNVKN 417
             M MK +D++AK KTAC  +LG GEDSINASA+LVMPMVSSKI GFRGN  +RAK+ +++ 
Sbjct:   358 MYMKAADLIAKTKTACLAALGFGEDSINASAILVMPMVSSKITGFRGNGLERAKILSMRG 417

Query:   418 SGSDWSGISIDEDGAKLLE 436
             SG  WS ++++E+G ++LE
Sbjct:   418 SG--WSKLAMEEEGTRMLE 434

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040718-379 nipal3 "NIPA-like domain containing 3" [Danio rerio (taxid:7955)]

 Score = 245 (91.3 bits), Expect = 1.2e-18, P = 1.2e-18
 Identities = 82/315 (26%), Positives = 151/315 (47%)

Query:    11 NLVGSIAINFGTNLLKLG-HIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGN 69
             NL+G++   FG  L+ +   I+++ H TL      G    +   +  +W +G+++ +LG 
Sbjct:    20 NLIGTLLAIFGNLLVSISVSIQKQSHVTLA-----GNKDPRQYYYTKTWLLGLVLMVLGE 74

Query:    70 CLNFISFGYAAQSLLAALGSVQFVSNIAFSY-FVFNKMVTVKVL---VAT----AFIVLG 121
                F+S+ +A  SL+A L +V  +S+    + F+  K    + L   + T    A    G
Sbjct:    75 GALFVSYAFAPLSLIAPLNAVSVISSSILGFLFLREKWKAQEFLKRYILTFLGCAMTAGG 134

Query:   122 NIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCL--ILIFIVAIYHYIYRKGENLLAVSG 179
                 V+FG +       E + +   +  FL+Y L  I+ F + +Y+Y  R    L+ +  
Sbjct:   135 TYLFVTFGPNSHEKLNAENIVKHVISWPFLLYLLLGIIAFCLVLYYYKQRNANYLVLI-- 192

Query:   180 QDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFS 239
                    +LL    A++    GS +V+  K++S ++ L++    QL     Y M +   +
Sbjct:   193 -------LLL---VALL----GSVTVITVKAVSGMIVLSIVGPLQLSYPIFYVMFVCMVA 238

Query:   240 TAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTA 299
             T  F  + L +   L+D+ LI  +  I  T+F+I  G V++QE+   D L   +F+LG A
Sbjct:   239 TIVFQASFLAQASHLYDSSLIACVNYIFCTTFAIGGGAVFYQEFNHEDVLHICLFLLGCA 298

Query:   300 SVFIGISLLAPDESK 314
               F+G+ L+  ++ K
Sbjct:   299 ICFLGVFLITKNKRK 313

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

GO:0015693 "magnesium ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|F1NBN3 NPAL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 239 (89.2 bits), Expect = 1.6e-18, P = 1.6e-18
 Identities = 68/266 (25%), Positives = 132/266 (49%)

Query:    49 LKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVT 108
             L+P      W  G ++  +G   NF ++G+A  +L+A LG V  + +   S     K + 
Sbjct:    37 LQPFYRSKLWWCGAVLLGIGELGNFTAYGFAPIALVAPLGCVSIIGSAFISVIFLKKTMR 96

Query:   109 VKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIY 168
                ++  A  V+G   LV+F  + S   T  Q+     +  FLVY ++ I I  I  Y Y
Sbjct:    97 AADILGGALAVVGTYLLVTFAPNVSQQLTARQVQNDLVSWPFLVYVILEIIIFCILLYFY 156

Query:   169 RKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSW 228
             ++     AV     ++  +LL     ++   + S +V+  K++++++ L+     QL   
Sbjct:   157 KRK----AV-----KHIVVLL-----MMVALLASLTVIAVKAVASMIILSAKGKMQLTYP 202

Query:   229 FTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDA 288
               Y ML+L  ++  F +  LN+ L L++A  +VP+  +  T+ +I +G +++QE+Q    
Sbjct:   203 VFYIMLILMATSCVFQVKFLNQALHLYEARAVVPINFVFCTTSAIISGVIFYQEFQSAAF 262

Query:   289 LRATMFILGTASVFIGISLLAPDESK 314
             L   MF+ G    F+ + ++A ++++
Sbjct:   263 LSVFMFLFGCLLSFLSVFVIAVNKNE 288

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

MGI|MGI:1921802 Nipal3 "NIPA-like domain containing 3" [Mus musculus (taxid:10090)]

 Score = 219 (82.2 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 77/313 (24%), Positives = 145/313 (46%)

Query:    11 NLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNC 70
             NL+G++   FG  ++ +  +  +K+  +   G+    +        +W +G+L+ LLG  
Sbjct:    37 NLIGALLAIFGHLVVSIA-LNLQKYCHIRLAGSKDPRAY---FKTKTWWLGLLLLLLGEL 92

Query:    71 LNFISFGYAAQSLLAALGSVQFVSNIAFSY-FVFNK-----MVTVKVL--VATAFIVLGN 122
               F S+ +A  SL+  L +V  +++      F+  K      V   VL  V     ++G 
Sbjct:    93 GVFASYAFAPLSLIVPLSAVSVIASAIIGIIFIKEKWKPKDFVRRYVLSFVGCGLAIVGT 152

Query:   123 IFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYR-KGENLLAVSGQD 181
               LV+F  +     T E +A    +  FL+Y L+ I +  +  Y Y+ +  N + V    
Sbjct:   153 YLLVTFAPNSHEKMTGENIARHLVSWPFLLYMLVAIVLFCLLLYFYKERNANSIVV---- 208

Query:   182 NRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTA 241
                  +LL     +V+  +GS +V+  K++S +L L++    QL     Y M +   +TA
Sbjct:   209 -----ILL-----LVA-LLGSMTVVTVKAVSGMLVLSIQGNLQLDYPIFYVMFVCMVATA 257

Query:   242 GFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASV 301
              +    L+E   ++D+ LI  +  I  T+ +I  G +++ ++   +AL   MF LG    
Sbjct:   258 IYQATFLSEASQIYDSSLIASVGYILSTTAAITAGAIFYLDFLGEEALHICMFALGCLIA 317

Query:   302 FIGISLLAPDESK 314
             F+G+ L+  +  K
Sbjct:   318 FLGVFLITRNRKK 330

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

GO:0015693 "magnesium ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0034220 "ion transmembrane transport" evidence=IEA

UNIPROTKB|E2REQ4 NIPAL3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 216 (81.1 bits), Expect = 4.3e-15, P = 4.3e-15
 Identities = 74/314 (23%), Positives = 144/314 (45%)

Query:    11 NLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNC 70
             NL+G++   FG  ++ +  +  +K+  +   G+    +        +W +G+ + LLG  
Sbjct:    33 NLIGALLAIFGHLVVSIA-LNLQKYCHIRLAGSKDPRAY---FKTKTWWLGLFLMLLGEL 88

Query:    71 LNFISFGYAAQSLLAALGSVQFVSNIAFSY-FVFNKMVTVKVL-------VATAFIVLGN 122
               F S+ +A  SL+  L +V  +++      F+  K      L       V     ++G 
Sbjct:    89 GVFASYAFAPLSLIVPLSAVSVIASAIIGIIFIKEKWKPKDFLRRYVLSFVGCGLAIVGT 148

Query:   123 IFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCL--ILIFIVAIYHYIYRKGENLLAVSGQ 180
               LV+F  +     T E + +   +  FL+Y L  I++F + +Y Y  +   N++ +   
Sbjct:   149 YLLVTFAPNSHEKMTGENITKHLVSWPFLLYMLVEIVLFCLLLYFYKEKNANNIIVI--- 205

Query:   181 DNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFST 240
                   +LL    A++    GS +V+  K+++ +L L++    QL     Y M +   +T
Sbjct:   206 ------LLL---VALL----GSMTVVTVKAVAGMLVLSIQGNLQLDYPIFYVMFVCMVAT 252

Query:   241 AGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTAS 300
             A +  A L++   ++D+ LI  +  I  T+ +I  G V++ ++   DAL   MF LG   
Sbjct:   253 AVYQAAFLSQASQMYDSSLIASVGYILSTTIAITAGAVFYLDFIGEDALHICMFALGCLI 312

Query:   301 VFIGISLLAPDESK 314
              F+G+ L+  +  K
Sbjct:   313 AFLGVFLITRNRKK 326

GO:0016020 "membrane" evidence=IEA

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

UNIPROTKB|E1BLE7 NIPAL3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 215 (80.7 bits), Expect = 5.5e-15, P = 5.5e-15
 Identities = 74/314 (23%), Positives = 142/314 (45%)

Query:    11 NLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNC 70
             NL+G++   FG  ++ +  +  +K+  +   G+    +        +W +G+ + LLG  
Sbjct:    33 NLIGALLAIFGHLVVSIA-LNLQKYCHIRLAGSKDPRAY---FKTKTWWLGLFLMLLGEL 88

Query:    71 LNFISFGYAAQSLLAALGSVQFVSNIAFSY-FVFNKMVTVKVL-------VATAFIVLGN 122
               F S+ +A  SL+  L +V  +++      F+  K      L       V     ++G 
Sbjct:    89 GVFASYAFAPLSLIVPLSAVSVIASAIIGIIFIKEKWKPKDFLRRYILSFVGCGLAIVGT 148

Query:   123 IFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCL--ILIFIVAIYHYIYRKGENLLAVSGQ 180
               LV+FG +     T + +     +  FL+Y L  I++F + +Y Y  R   N++ +   
Sbjct:   149 YLLVTFGPNSHEKMTGDNIIRHLVSWPFLLYMLVEIILFCLLLYFYKERNANNIVVI--- 205

Query:   181 DNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFST 240
                   +LL    A++    GS +V+  K+++ +L L++    QL     Y M +   +T
Sbjct:   206 ------LLL---VALL----GSMTVVTVKAVAGMLVLSIQGNLQLDYPIFYVMFVCMVAT 252

Query:   241 AGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTAS 300
             A +  A L +   ++D+ LI  +  I  T+ +I  G V++ ++   D L   MF LG   
Sbjct:   253 AIYQAAFLGQASQMYDSSLIASVGYILSTTVAITAGAVFYLDFLGQDVLHVCMFALGCLI 312

Query:   301 VFIGISLLAPDESK 314
              F+G+ L+  +  K
Sbjct:   313 AFLGVFLITRNRKK 326

GO:0016020 "membrane" evidence=IEA

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

UNIPROTKB|E1BR96 NIPAL3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 213 (80.0 bits), Expect = 9.6e-15, P = 9.6e-15
 Identities = 74/313 (23%), Positives = 143/313 (45%)

Query:    11 NLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNC 70
             NL+G++   FG  ++ +  +  +K+S +   G+  K S +      +W  G+ + +LG  
Sbjct:    35 NLIGALLAIFGHLVISIA-LNLQKYSHIRLAGS--KDS-RAYFKTKTWWCGLFLLVLGEL 90

Query:    71 LNFISFGYAAQSLLAALGSVQFVSNIAFSY-FVFNKMVTVKVL-------VATAFIVLGN 122
               F S+ +A  SL+  L +V  +++      F+  K    + L       V     ++G 
Sbjct:    91 GVFSSYAFAPLSLIVPLSAVSVIASAIIGIIFIKEKWKPKEFLRRYVLSFVGCGLAIVGT 150

Query:   123 IFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYR-KGENLLAVSGQD 181
               L++FG +     T E +     +  FL+Y L+ I I  +  Y Y+ K  N + +    
Sbjct:   151 YLLITFGPNSHEKMTGENITRHLVSWPFLLYMLVEIIIFCLLLYFYKEKNANYIVI---- 206

Query:   182 NRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTA 241
                  +LL     +V+  +GS +V+  K+++ ++ +++    QL+    Y ML+   +TA
Sbjct:   207 -----ILL-----LVA-LLGSMTVVTVKAVAGMIVVSIRGNLQLNYPIFYIMLVCMIATA 255

Query:   242 GFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASV 301
              F    L +   L+D+  I  +  I  T+ +I  G  ++ ++   D L   MF LG    
Sbjct:   256 VFQATFLAQASQLYDSSQIASIGYILSTTVAITAGATFYLDFTGEDVLHICMFALGCLIA 315

Query:   302 FIGISLLAPDESK 314
             F+G+ L+  +  K
Sbjct:   316 FLGVFLITRNRKK 328

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|A6NN97 NIPAL3 "Uncharacterized protein" [Homo sapiens (taxid:9606)]

 Score = 210 (79.0 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 73/314 (23%), Positives = 142/314 (45%)

Query:    11 NLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNC 70
             NL+G++   FG  ++ +  +  +K+  +   G+    +        +W +G+ + LLG  
Sbjct:    33 NLIGALLAIFGHLVVSIA-LNLQKYCHIRLAGSKDPRAY---FKTKTWWLGLFLMLLGEL 88

Query:    71 LNFISFGYAAQSLLAALGSVQFVSNIAFSY-FVFNKMVTVKVL-------VATAFIVLGN 122
               F S+ +A  SL+  L +V  +++      F+  K      L       V     V+G 
Sbjct:    89 GVFASYAFAPLSLIVPLSAVSVIASAIIGIIFIKEKWKPKDFLRRYVLSFVGCGLAVVGT 148

Query:   123 IFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCL--ILIFIVAIYHYIYRKGENLLAVSGQ 180
               LV+F  +     T E +     +  FL+Y L  I++F + +Y Y  +   N++ +   
Sbjct:   149 YLLVTFAPNSHEKMTGENVTRHLVSWPFLLYMLVEIILFCLLLYFYKEKNANNIVVI--- 205

Query:   181 DNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFST 240
                   +LL    A++    GS +V+  K+++ +L L++    QL     Y M +   +T
Sbjct:   206 ------LLL---VALL----GSMTVVTVKAVAGMLVLSIQGNLQLDYPIFYVMFVCMVAT 252

Query:   241 AGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTAS 300
             A +  A L++   ++D+ LI  +  I  T+ +I  G +++ ++   D L   MF LG   
Sbjct:   253 AVYQAAFLSQASQMYDSSLIASVGYILSTTIAITAGAIFYLDFIGEDVLHICMFALGCLI 312

Query:   301 VFIGISLLAPDESK 314
              F+G+ L+  +  K
Sbjct:   313 AFLGVFLITRNRKK 326

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

RGD|1564315 Nipal2 "NIPA-like domain containing 2" [Rattus norvegicus (taxid:10116)]

 Score = 210 (79.0 bits), Expect = 1.7e-14, P = 1.7e-14
 Identities = 62/271 (22%), Positives = 124/271 (45%)

Query:    46 KHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNK 105
             K   KP      W  G+L+  +G   NF ++G A  +L+A LG V    +   S     +
Sbjct:    78 KEHPKPYFKSVLWLSGVLLMAIGETGNFAAYGVAPITLIAPLGCVSVTGSAVISVIFLKE 137

Query:   106 MVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCL--ILIFIVAI 163
              +    L+       G   LV+F  + +   +   +   +    FLVY +  IL+F + +
Sbjct:   138 NLRASDLLGMTLAFAGTYLLVNFAPNITQAISARTIQYYFVGWQFLVYMILEILVFCILL 197

Query:   164 YHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGY 223
             Y +  RKG+  + +          LL     +V+  + S +V+  K++S ++ L+++   
Sbjct:   198 YFH-KRKGKKHIVI----------LL----TLVA-LLASLTVISVKAVSGMITLSVTGKM 241

Query:   224 QLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEY 283
             QL     Y ML++  ++  F +  LN+   L+    +VP+  + +T+ +I  G +++QE+
Sbjct:   242 QLTYAIFYIMLVIMIASCVFQVKFLNQATELYTMTTVVPVNHVFFTTSAIIAGIIFYQEF 301

Query:   284 QVFDALRATMFILGTASVFIGISLLAPDESK 314
                  L   +++ G    F+G+ L+  +  +
Sbjct:   302 LGAAFLTVFIYLFGCFLSFLGVFLVTRNRER 332

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2076186 AT3G23870 "AT3G23870" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 2.0e-14, P = 2.0e-14
 Identities = 51/258 (19%), Positives = 121/258 (46%)

Query:    58 WRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAF 117
             W  G++  ++G   NF ++ +A   L+  LG++  + +   ++F+  + + +  ++    
Sbjct:    56 WWAGMITMIVGEVANFAAYAFAPAILVTPLGALSIIFSAVLAHFILKEKLHMFGILGCIL 115

Query:   118 IVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAV 177
              V+G+  +V    H+  + + +Q+ +      FLVY  +++ +VAI  + Y         
Sbjct:   116 CVVGSTTIVLHAPHEQKIESVKQIWQLAIEPGFLVYSAVIVIVVAILIFYY--------- 166

Query:   178 SGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLF 237
                + RY +  +   Y  +   +GS +V+  K+++  ++L  S   Q   + T+  +L+ 
Sbjct:   167 ---EPRYGKTHM-IVYVGICSLMGSLTVMSVKAVAIAIKLTFSGTNQFKYFNTWIFILVV 222

Query:   238 FSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILG 297
              +     +  LN+ L  F+  +I P++ + +T+F+I    + F+++     L+    + G
Sbjct:   223 ATCCILQINYLNKALDTFNTAVISPVYYVMFTTFTIIASMIMFKDWASQSGLKIATELCG 282

Query:   298 TASVFIGISLLAPDESKG 315
               ++  G  LL   +  G
Sbjct:   283 FVTILSGTFLLHKTKDMG 300

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_XIV0798 hypothetical protein (444 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	445
pfam05653	300	pfam05653, Mg_trans_NIPA, Magnesium transporter NI	5e-19

>gnl|CDD|114381 pfam05653, Mg_trans_NIPA, Magnesium transporter NIPA

 Score = 86.8 bits (215), Expect = 5e-19
 Identities = 58/306 (18%), Positives = 128/306 (41%), Gaps = 23/306 (7%)

Query: 5   VIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILV 64
            IG  + +  SI I     + K G +   +       G  G   LK  +    W  G+L 
Sbjct: 6   YIGLILAVSSSIFIGSSFIIKKKGLLRLARGGM--RAGEGGYGYLKEWL----WWAGLLT 59

Query: 65  FLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIF 124
            ++G   NF ++ +A  +L+  LG++  + +   S F  N+ + +   +     ++G+  
Sbjct: 60  MIVGEAANFAAYAFAPATLVTPLGALSVIISAVLSSFFLNEKLNLFGKLGCVLCIVGSTV 119

Query: 125 LVSFGNHQSPVYTPEQLAEKYSNITFLVY--CLILIFIVAIYHYIYRKGENLLAVSGQDN 182
           +V     +  + +  ++    ++  FLVY   ++ + ++ I+    R G+  + V     
Sbjct: 120 IVIHAPKEQEIESVREVWNLATDPGFLVYVILVVGVVLILIFFVEPRHGQTNILV----- 174

Query: 183 RYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTAG 242
                     Y  +   +GS +V+  K+L   ++L  S   QL     +  L++  +   
Sbjct: 175 ----------YITICSLIGSLTVMSVKALGIAIKLTFSGKNQLGYPQFWIFLVVVVTCVV 224

Query: 243 FWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVF 302
             +  LN+ L +F+  ++ P++ + +T+  I    + F+E+           + G  ++ 
Sbjct: 225 TQINYLNKALDIFNTSIVTPVYYVFFTTSVIAASAILFKEWLGQSFDDIAGELCGFFTIL 284

Query: 303 IGISLL 308
           +G  LL
Sbjct: 285 LGTFLL 290

NIPA (nonimprinted in Prader-Willi/Angelman syndrome) is a family of integral membrane proteins which function as magnesium transporters. Length = 300

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	445
KOG2922	335	consensus Uncharacterized conserved protein [Funct	100.0
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	100.0
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.02
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.99
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.64
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.61
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.6
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.58
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	98.53
PRK15430	296	putative chloramphenical resistance permease RarD;	98.42
PRK11689	295	aromatic amino acid exporter; Provisional	98.37
PLN00411	358	nodulin MtN21 family protein; Provisional	98.31
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	98.25
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.24
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.24
PRK11272	292	putative DMT superfamily transporter inner membran	98.24
COG2510	140	Predicted membrane protein [Function unknown]	98.2
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.18
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.1
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	98.08
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.07
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.97
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.93
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.82
PRK13499	345	rhamnose-proton symporter; Provisional	97.68
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	97.68
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	97.57
PRK10532	293	threonine and homoserine efflux system; Provisiona	97.55
COG2510	140	Predicted membrane protein [Function unknown]	97.41
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	97.4
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	97.27
PLN00411	358	nodulin MtN21 family protein; Provisional	97.22
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	97.16
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.05
PRK11431	105	multidrug efflux system protein; Provisional	97.03
KOG4510	346	consensus Permease of the drug/metabolite transpor	96.93
COG2076	106	EmrE Membrane transporters of cations and cationic	96.84
PRK11272	292	putative DMT superfamily transporter inner membran	96.71
PRK11689	295	aromatic amino acid exporter; Provisional	96.71
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	96.71
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	96.48
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	96.27
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	96.24
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	96.08
COG2962	293	RarD Predicted permeases [General function predict	95.91
COG0697	292	RhaT Permeases of the drug/metabolite transporter	95.58
PRK09541	110	emrE multidrug efflux protein; Reviewed	95.57
PRK15430	296	putative chloramphenical resistance permease RarD;	95.37
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	95.01
PRK11431	105	multidrug efflux system protein; Provisional	94.52
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	94.5
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	94.33
PRK10650	109	multidrug efflux system protein MdtI; Provisional	94.3
KOG2765	416	consensus Predicted membrane protein [Function unk	94.14
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	94.01
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	93.52
PF13536	113	EmrE: Multidrug resistance efflux transporter	93.43
KOG3912	372	consensus Predicted integral membrane protein [Gen	93.2
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	93.04
COG2076	106	EmrE Membrane transporters of cations and cationic	92.15
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	91.92
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	91.9
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	91.18
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	90.84
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	89.83
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	89.31
KOG2766	336	consensus Predicted membrane protein [Function unk	89.11
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	88.95
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	87.99
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	86.72
COG3169	116	Uncharacterized protein conserved in bacteria [Fun	86.68
COG1742	109	Uncharacterized conserved protein [Function unknow	85.09
KOG4831	125	consensus Unnamed protein [Function unknown]	83.86
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	82.14

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=2.5e-63  Score=489.44  Aligned_cols=297  Identities=24%  Similarity=0.400  Sum_probs=274.2

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHhhhh
Q 013305            1 MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAA   80 (445)
Q Consensus         1 m~~~~IGi~Lal~ss~l~a~G~~lqK~a~~~~~~~~~~~~~g~~g~~~~~~ll~~p~W~~G~~l~~~g~il~~~Al~~ap   80 (445)
                      +++|++|+++|+.||++++.+.++|||+|+|.++...++..  .++    +|++.|+||+|++.|++|+++||.||+|||
T Consensus        16 ~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~~~~ra~~--gg~----~yl~~~~Ww~G~ltm~vGei~NFaAYaFAP   89 (335)
T KOG2922|consen   16 SSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGASGLRAGE--GGY----GYLKEPLWWAGMLTMIVGEIANFAAYAFAP   89 (335)
T ss_pred             ccCceeeeeehhhccEEEeeehhhhHHHHHHHhhhcccccC--CCc----chhhhHHHHHHHHHHHHHhHhhHHHHhhch
Confidence            46899999999999999999999999999998765444322  233    345679999999999999999999999999


Q ss_pred             hHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeecCCCCCCCCHHHHHHHhcchhHHHHHHHHHHH
Q 013305           81 QSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFI  160 (445)
Q Consensus        81 ~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g~~~~~~~t~~eL~~~~~~~~fl~y~~i~ivi  160 (445)
                      +++|+|||++++++++++|+++|||+++..+.+||++|++|.+++|.|+|++++..|++|+.+++.+|+|++|+.+.+++
T Consensus        90 asLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~el~~~~~~~~Fliy~~~iil~  169 (335)
T KOG2922|consen   90 ASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEEVWELATEPGFLVYVIIIILI  169 (335)
T ss_pred             HhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccccHHHHHHHhcCccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHHhccccccccCCCchhhhhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHH
Q 013305          161 VAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFST  240 (445)
Q Consensus       161 v~l~~~~~r~~~~~~~~~g~~~~~~~~l~~l~y~~~sGllgg~svl~aK~~~~ll~~ti~g~~qf~~w~tY~llv~~v~~  240 (445)
                      ++++++.++.++      |+.       +.++|..+|+++|++||+++|+++.+++++++|++|+.+|+||+++++++.|
T Consensus       170 ~~il~~~~~p~~------g~t-------nilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~ql~~~~ty~~~l~~~~~  236 (335)
T KOG2922|consen  170 VLILIFFYAPRY------GQT-------NILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNNQLFYPLTWIFLLVVATC  236 (335)
T ss_pred             HHHHheeecccc------ccc-------ceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHH
Confidence            777666555432      444       5789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHHHhhheecCCCCCCC
Q 013305          241 AGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDESKGG  316 (445)
Q Consensus       241 ~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lLs~~~~~~~  316 (445)
                      +.+|++||||||++||+++|.|+|||+||+++|++|.|+|+||++++..++.++++|+++++.|+++|.+.++.+.
T Consensus       237 ~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~~~kd~~~  312 (335)
T KOG2922|consen  237 VSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLHRTKDMEI  312 (335)
T ss_pred             HHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEeeeeccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999988775543

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=100.00  E-value=6.4e-61  Score=479.86  Aligned_cols=295  Identities=31%  Similarity=0.536  Sum_probs=267.9

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHhhhhh
Q 013305            2 GEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQ   81 (445)
Q Consensus         2 ~~~~IGi~Lal~ss~l~a~G~~lqK~a~~~~~~~~~~~~~g~~g~~~~~~ll~~p~W~~G~~l~~~g~il~~~Al~~ap~   81 (445)
                      .+|+||+++|++||++++.|.++|||+|.|.++.+.++      ....++++++|+||+|+++|++|++++++||+|+|+
T Consensus         3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~------~~~~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~   76 (300)
T PF05653_consen    3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRA------GSGGRSYLRRPLWWIGLLLMVLGEILNFVALGFAPA   76 (300)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc------cchhhHHHhhHHHHHHHHHHhcchHHHHHHHHhhhH
Confidence            36899999999999999999999999999887643321      112457899999999999999999999999999999


Q ss_pred             HHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeecCCCCCCCCHHHHHHHhcchhHHHHHHHHHHHH
Q 013305           82 SLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIV  161 (445)
Q Consensus        82 slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g~~~~~~~t~~eL~~~~~~~~fl~y~~i~iviv  161 (445)
                      ++|||+|++++++|++++++++|||+++++++|++++++|+++++.++|++++.+|++|+.+++.+|.|+.|+.+..++.
T Consensus        77 slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~~~~~~~~fl~y~~~~~~~~  156 (300)
T PF05653_consen   77 SLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELIALLSQPGFLVYFILVLVLI  156 (300)
T ss_pred             HHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHHHHhcCcceehhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988776655


Q ss_pred             HHHHHHHHhccccccccCCCchhhhhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHH
Q 013305          162 AIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTA  241 (445)
Q Consensus       162 ~l~~~~~r~~~~~~~~~g~~~~~~~~l~~l~y~~~sGllgg~svl~aK~~~~ll~~ti~g~~qf~~w~tY~llv~~v~~~  241 (445)
                      +.+.+..+++      .|++       +.+.|..+||++|++|++++|+++..++++++|+|||.+|.+|++++++++++
T Consensus       157 ~~L~~~~~~r------~g~~-------~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~~f~~~~~y~l~~~~v~~~  223 (300)
T PF05653_consen  157 LILIFFIKPR------YGRR-------NILVYISICSLIGSFTVLSAKAISILIKLTFSGDNQFTYPLTYLLLLVLVVTA  223 (300)
T ss_pred             HHHHHhhcch------hccc-------ceEEEEEEeccccchhhhHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHH
Confidence            4443333321      1322       34679999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHHHhhheecCCCCCC
Q 013305          242 GFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDESKG  315 (445)
Q Consensus       242 l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lLs~~~~~~  315 (445)
                      +.|++||||||++||+++|+|+|||+||++++++|+++|||+.++++++++++.+|++++++||++|+.+++++
T Consensus       224 ~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~~~  297 (300)
T PF05653_consen  224 VLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKDKE  297 (300)
T ss_pred             HHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999887654

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.02  E-value=3.8e-08  Score=97.45  Aligned_cols=265  Identities=11%  Similarity=0.031  Sum_probs=142.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhccccC-CCCCC---CCC---c---cccccccccchh---HHHHHHHHHHHHHHHH
Q 013305            8 AFINLVGSIAINFGTNLLKLGHIEREKHST-LDSDG---TNG---K---HSLKPIVHYHSW---RVGILVFLLGNCLNFI   74 (445)
Q Consensus         8 i~Lal~ss~l~a~G~~lqK~a~~~~~~~~~-~~~~g---~~g---~---~~~~~ll~~p~W---~~G~~l~~~g~il~~~   74 (445)
                      .++.+.++++.+..+.+.|+...++..-.. ..--.   ...   .   ....+..++..|   ..+.........+.+.
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADKEPDFLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLAQ   82 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence            567889999999999999966443211000 00000   000   0   000001111122   2233334556677778


Q ss_pred             HHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeecCCCCCCCCHHHHHHHhcchhHHHHH
Q 013305           75 SFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYC  154 (445)
Q Consensus        75 Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g~~~~~~~t~~eL~~~~~~~~fl~y~  154 (445)
                      ++...|.+.++|+...+-++..+++.+++||++++++|.|.++++.|+.++..  +. ....+.         ... .+.
T Consensus        83 a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~--~~-~~~~~~---------~g~-~~~  149 (281)
T TIGR03340        83 AYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL--SR-FAQHRR---------KAY-AWA  149 (281)
T ss_pred             HHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--cc-ccccch---------hHH-HHH
Confidence            99999999999999999999999999999999999999999999999987653  21 111110         111 122


Q ss_pred             HHHHHHHHHHHHHHHhccccccccCCCchhhhhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccCcc-chhHHHHHH
Q 013305          155 LILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQ-LHSWFTYSM  233 (445)
Q Consensus       155 ~i~iviv~l~~~~~r~~~~~~~~~g~~~~~~~~l~~l~y~~~sGllgg~svl~aK~~~~ll~~ti~g~~q-f~~w~tY~l  233 (445)
                      .+..+..+......|+...     +.+ ...   ....+...+-++++.-.....    ...   .+... ...+..+.+
T Consensus       150 l~aal~~a~~~i~~k~~~~-----~~~-~~~---~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~  213 (281)
T TIGR03340       150 LAAALGTAIYSLSDKAAAL-----GVP-AFY---SALGYLGIGFLAMGWPFLLLY----LKR---HGRSMFPYARQILPS  213 (281)
T ss_pred             HHHHHHHHHhhhhcccccc-----chh-ccc---ccHHHHHHHHHHHHHHHHHHH----HHH---hccchhhhHHHHHHH
Confidence            2111111111111222110     000 000   111111111111111111000    000   11111 111222222


Q ss_pred             HHHHHHHHHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHHHhhhee
Q 013305          234 LLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLL  308 (445)
Q Consensus       234 lv~~v~~~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lL  308 (445)
                      +....+.......+.++++++.+++.+.+..|. .++++++.|.++++|..+  .    .-.+|..++++|+++|
T Consensus       214 ~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l-~pv~a~l~g~~~lgE~~~--~----~~~iG~~lil~Gv~l~  281 (281)
T TIGR03340       214 ATLGGLMIGGAYALVLWAMTRLPVATVVALRNT-SIVFAVVLGIWFLNERWY--L----TRLMGVCIIVAGLVVL  281 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCceEEEeeccc-HHHHHHHHHHHHhCCCcc--H----HHHHHHHHHHHhHHhC
Confidence            333333333344456999999999999999876 589999999999999753  2    2456778888888764

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.99  E-value=1.5e-09  Score=96.74  Aligned_cols=117  Identities=16%  Similarity=0.103  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCCccccccccccc--hhHHHHHHHHHHHHHHHHHHhhhhhHH
Q 013305            6 IGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYH--SWRVGILVFLLGNCLNFISFGYAAQSL   83 (445)
Q Consensus         6 IGi~Lal~ss~l~a~G~~lqK~a~~~~~~~~~~~~~g~~g~~~~~~ll~~p--~W~~G~~l~~~g~il~~~Al~~ap~sl   83 (445)
                      +|.++.+++.++.+.||.+.|++..+.+..+..     ...........+|  .-+.|+.+++++.++|..++...|+++
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~-----~~~~~~~~~~~~p~~~i~lgl~~~~la~~~w~~aL~~~~ls~   76 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHA-----WDFIAALLAFGLALRAVLLGLAGYALSMLCWLKALRYLPLSR   76 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccch-----hHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCcHH
Confidence            477889999999999999999998764321100     0000111234567  788999999999999999999999999


Q ss_pred             HhhhchhhHHHHHHHHHH--HhccccccchhhhHHHhhhceeeEEe
Q 013305           84 LAALGSVQFVSNIAFSYF--VFNKMVTVKVLVATAFIVLGNIFLVS  127 (445)
Q Consensus        84 V~PLgal~lv~~~l~a~~--~l~E~~~~~~~~G~~lii~G~~liv~  127 (445)
                      ..|+-+..+++..+++..  ++||+++..+++|+++|++|++++..
T Consensus        77 Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~  122 (129)
T PRK02971         77 AYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINL  122 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence            999999998888888875  79999999999999999999987653

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.64  E-value=1.4e-07  Score=81.79  Aligned_cols=102  Identities=17%  Similarity=0.116  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCCccccccccccchhHHHH--HHHHHHHHHHHHHHhhhhhHHHhhh
Q 013305           10 INLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGI--LVFLLGNCLNFISFGYAAQSLLAAL   87 (445)
Q Consensus        10 Lal~ss~l~a~G~~lqK~a~~~~~~~~~~~~~g~~g~~~~~~ll~~p~W~~G~--~l~~~g~il~~~Al~~ap~slV~PL   87 (445)
                      +-+++.++-..|+.+.|++.+..+.          +....     ++.++.+.  ..|.++..++..++...|+++.+|+
T Consensus         5 ~l~~ai~~ev~g~~~lK~s~~~~~~----------~~~~~-----~~l~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~   69 (111)
T PRK15051          5 TLVFASLLSVAGQLCQKQATRPVAI----------GKRRK-----HIVLWLGLALACLGLAMVLWLLVLQNVPVGIAYPM   69 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCc----------chhhh-----HHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHH
Confidence            4556777888999999998533210          11000     12334544  6678899999999999999999999


Q ss_pred             chhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEE
Q 013305           88 GSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV  126 (445)
Q Consensus        88 gal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv  126 (445)
                      .+++++++.+++.+++||+++.++++|.++++.|++++.
T Consensus        70 ~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         70 LSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999987654

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.61  E-value=5.6e-06  Score=82.90  Aligned_cols=224  Identities=16%  Similarity=0.125  Sum_probs=139.0

Q ss_pred             hhHHHHHH---HHHHHHHHHHHHhhhhhHHHhhhch-hhHHHHHHHHHHHhccccccch----hhhHHHhhhceeeEEee
Q 013305           57 SWRVGILV---FLLGNCLNFISFGYAAQSLLAALGS-VQFVSNIAFSYFVFNKMVTVKV----LVATAFIVLGNIFLVSF  128 (445)
Q Consensus        57 ~W~~G~~l---~~~g~il~~~Al~~ap~slV~PLga-l~lv~~~l~a~~~l~E~~~~~~----~~G~~lii~G~~liv~~  128 (445)
                      .|..|++.   +..|+++.+.|.....+++-.|+.. ++++++.+.+.+++||+.++++    ++|++++++|++++...
T Consensus        58 ~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~  137 (290)
T TIGR00776        58 IFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRS  137 (290)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEec
Confidence            45667777   8899999999999999999999999 8999999999999999999999    99999999998877654


Q ss_pred             cCCCCCCCCHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCchhhhhhhhHHHHHHHhhhhhHHHHHH
Q 013305          129 GNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFA  208 (445)
Q Consensus       129 g~~~~~~~t~~eL~~~~~~~~fl~y~~i~iviv~l~~~~~r~~~~~~~~~g~~~~~~~~l~~l~y~~~sGllgg~svl~a  208 (445)
                      .+++.   ..++.   ...+.=+.+..+..+..+......|.-+    .++         ....+....|++.+-.+++.
T Consensus       138 ~~~~~---~~~~~---~~~~~Gi~~~l~sg~~y~~~~~~~~~~~----~~~---------~~~~~~~~~g~~~~~~~~~~  198 (290)
T TIGR00776       138 KDKSA---GIKSE---FNFKKGILLLLMSTIGYLVYVVVAKAFG----VDG---------LSVLLPQAIGMVIGGIIFNL  198 (290)
T ss_pred             ccccc---ccccc---cchhhHHHHHHHHHHHHHHHHHHHHHcC----CCc---------ceehhHHHHHHHHHHHHHHH
Confidence            32211   11110   0111111222222211111111223211    011         01122233344433333333


Q ss_pred             HHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCCh
Q 013305          209 KSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDA  288 (445)
Q Consensus       209 K~~~~ll~~ti~g~~qf~~w~tY~llv~~v~~~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~  288 (445)
                      .-.    +   .  ..+.....+..++..+.. ..+..+...+++.+......++.....++++++.|+.+|+|..  ++
T Consensus       199 ~~~----~---~--~~~~~~~~~~~~~~Gi~~-~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~--~~  266 (290)
T TIGR00776       199 GHI----L---A--KPLKKYAILLNILPGLMW-GIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKK--TK  266 (290)
T ss_pred             HHh----c---c--cchHHHHHHHHHHHHHHH-HHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCC--Cc
Confidence            220    1   0  112222333333344444 5555555677774555556677777779999999999999986  46


Q ss_pred             HHHHHHHHHHHHHHHhhheecCC
Q 013305          289 LRATMFILGTASVFIGISLLAPD  311 (445)
Q Consensus       289 ~~~~~~~~G~~vi~~GV~lLs~~  311 (445)
                      .++..+.+|+++++.|+.+++-.
T Consensus       267 ~~~~~~~iG~~lIi~~~~l~~~~  289 (290)
T TIGR00776       267 REMIAISVGIILIIIAANILGIG  289 (290)
T ss_pred             ceeehhHHHHHHHHHHHHHHhcc
Confidence            78888999999999999887643

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.60  E-value=3.4e-06  Score=84.31  Aligned_cols=208  Identities=14%  Similarity=0.151  Sum_probs=114.5

Q ss_pred             HHHHHHHHhh-hhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeecCCCCCCCCHHHHHHHhcc
Q 013305           69 NCLNFISFGY-AAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSN  147 (445)
Q Consensus        69 ~il~~~Al~~-ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g~~~~~~~t~~eL~~~~~~  147 (445)
                      ..+.+.++.+ .|....+-+..+.-++..+++++++|||+++++++|+++.++|+.++... ..+....+         .
T Consensus        73 ~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~-~~~~~~~~---------~  142 (299)
T PRK11453         73 FAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED-SLNGQHVA---------M  142 (299)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc-cCCCcchh---------H
Confidence            3344566666 47777777777788899999999999999999999999999998877631 11111100         0


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhccccccccCCCchhhhhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccCc----
Q 013305          148 ITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGY----  223 (445)
Q Consensus       148 ~~fl~y~~i~iviv~l~~~~~r~~~~~~~~~g~~~~~~~~l~~l~y~~~sGllgg~svl~aK~~~~ll~~ti~g~~----  223 (445)
                      .+ ..+..+..+..++.....|+-.       ++....   ..+.+.....++++.-...   .+ .+.   ++.+    
T Consensus       143 ~G-~~l~l~aal~~a~~~v~~~~~~-------~~~~~~---~~~~~~~~~~~~~~~~~~~---~~-~~~---~~~~~~~~  204 (299)
T PRK11453        143 LG-FMLTLAAAFSWACGNIFNKKIM-------SHSTRP---AVMSLVVWSALIPIIPFFV---AS-LIL---DGSATMIH  204 (299)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHh-------cccCcc---chhHHHHHHHHHHHHHHHH---HH-HHh---cCchhhhh
Confidence            11 1122111222222111222210       000000   1112222222222211110   00 000   1110    


Q ss_pred             --cchhHHHHH-HHHHHHHHHHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHHH
Q 013305          224 --QLHSWFTYS-MLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTAS  300 (445)
Q Consensus       224 --qf~~w~tY~-llv~~v~~~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~v  300 (445)
                        ...++..+. ++...+++...+....++++++.++..+.++ ....++++++.|.++++|...  ..    ..+|.++
T Consensus       205 ~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~-~~l~Pv~a~~~~~l~lgE~~~--~~----~~iG~~l  277 (299)
T PRK11453        205 SLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPL-SLLVPVVGLASAALLLDERLT--GL----QFLGAVL  277 (299)
T ss_pred             hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHHHHHHHhCCCcc--HH----HHHHHHH
Confidence              011233332 3333445566666677999999999877775 558899999999999999743  33    3577788


Q ss_pred             HHHhhheecCC
Q 013305          301 VFIGISLLAPD  311 (445)
Q Consensus       301 i~~GV~lLs~~  311 (445)
                      +++|+++....
T Consensus       278 I~~gv~l~~~~  288 (299)
T PRK11453        278 IMAGLYINVFG  288 (299)
T ss_pred             HHHHHHHHhcc
Confidence            88888876543

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.58  E-value=4.6e-06  Score=80.64  Aligned_cols=207  Identities=16%  Similarity=0.113  Sum_probs=120.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeecCCCCCCCC
Q 013305           58 WRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYT  137 (445)
Q Consensus        58 W~~G~~l~~~g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g~~~~~~~t  137 (445)
                      -..|.+.+.+.+.+.+.|+.+.|.+...++..+.=+++.+++.+++|||++++++.|+++.++|+.++...+   +...+
T Consensus        50 ~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~---~~~~~  126 (260)
T TIGR00950        50 LLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDG---NLSIN  126 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCC---ccccc
Confidence            356666677888888999999999999999999999999999999999999999999999999998875422   11100


Q ss_pred             HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCchhhhhhhhHHH--HHHHhhhhhHHHHHHHHHHHHH
Q 013305          138 PEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSY--AIVSGAVGSFSVLFAKSLSNLL  215 (445)
Q Consensus       138 ~~eL~~~~~~~~fl~y~~i~iviv~l~~~~~r~~~~~~~~~g~~~~~~~~l~~l~y--~~~sGllgg~svl~aK~~~~ll  215 (445)
                               ..+ ..+..+..+..+......|+....   .+..       ....+  ....|   +.. +..-.     
T Consensus       127 ---------~~G-~~~~l~a~~~~a~~~~~~k~~~~~---~~~~-------~~~~~~~~~~~~---~~~-l~~~~-----  177 (260)
T TIGR00950       127 ---------PAG-LLLGLGSGISFALGTVLYKRLVKK---EGPE-------LLQFTGWVLLLG---ALL-LLPFA-----  177 (260)
T ss_pred             ---------HHH-HHHHHHHHHHHHHHHHHHhHHhhc---CCch-------HHHHHHHHHHHH---HHH-HHHHH-----
Confidence                     011 112222222222211222321100   0000       00111  11111   111 11100     


Q ss_pred             HHHhccCccchhHHHHH-HHHHHHHHHHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHH
Q 013305          216 RLAMSNGYQLHSWFTYS-MLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMF  294 (445)
Q Consensus       216 ~~ti~g~~qf~~w~tY~-llv~~v~~~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~  294 (445)
                        .+.++....++..+. ++...+++........++++++.++..+..+.+ ..++++++.+.++++|..  ++.    .
T Consensus       178 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~-~~pv~~~ll~~~~~~E~~--~~~----~  248 (260)
T TIGR00950       178 --WFLGPNPQALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILAL-AEPLVALLLGLLILGETL--SLP----Q  248 (260)
T ss_pred             --HhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHH-HHHHHHHHHHHHHhCCCC--CHH----H
Confidence              012222112333443 222233333333334489999999887777655 889999999999999964  343    3


Q ss_pred             HHHHHHHHHhh
Q 013305          295 ILGTASVFIGI  305 (445)
Q Consensus       295 ~~G~~vi~~GV  305 (445)
                      ..|.++++.|+
T Consensus       249 ~~G~~li~~g~  259 (260)
T TIGR00950       249 LIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHhc
Confidence            45666666665

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=98.53  E-value=1.6e-05  Score=81.43  Aligned_cols=76  Identities=12%  Similarity=0.243  Sum_probs=64.8

Q ss_pred             cccchhHHHHH--HHHHHHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEee
Q 013305           53 VHYHSWRVGIL--VFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSF  128 (445)
Q Consensus        53 l~~p~W~~G~~--l~~~g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~  128 (445)
                      +++|.|.-=++  +.+.++.+...||.+-+++-++=|...+++++++++.++||||.++.+++|+++|+.|+++++..
T Consensus        75 ~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~s  152 (334)
T PF06027_consen   75 LKRPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVS  152 (334)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeee
Confidence            45555543332  23678888899999999999999999999999999999999999999999999999998876654

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.42  E-value=1.3e-05  Score=80.20  Aligned_cols=125  Identities=10%  Similarity=0.003  Sum_probs=86.3

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCC-CC--CC----------CCccccccccccchh----HHHHH
Q 013305            1 MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLD-SD--GT----------NGKHSLKPIVHYHSW----RVGIL   63 (445)
Q Consensus         1 m~~~~IGi~Lal~ss~l~a~G~~lqK~a~~~~~~~~~~~-~~--g~----------~g~~~~~~ll~~p~W----~~G~~   63 (445)
                      |.....|++++++++++.+....+-|... +-+....-. +.  +.          .+....++..+++.+    ..|..
T Consensus         3 ~~~~~~g~~~~l~a~~~wg~~~~~~k~~~-~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (296)
T PRK15430          3 AKQTRQGVLLALAAYFIWGIAPAYFKLIY-YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAV   81 (296)
T ss_pred             chhhhhHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHH
Confidence            55667789999999998888888887542 100000000 00  00          000000000111222    25566


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEE
Q 013305           64 VFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV  126 (445)
Q Consensus        64 l~~~g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv  126 (445)
                      .+.+...+.+.++...|.+...-+..+.=++..+++.+++|||+++++|.|.++..+|++++.
T Consensus        82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~  144 (296)
T PRK15430         82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL  144 (296)
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence            677788999999999999999999999989999999999999999999999999999998764

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.37  E-value=2.9e-05  Score=77.55  Aligned_cols=216  Identities=18%  Similarity=0.105  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhh----hhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeecCCCCCC
Q 013305           60 VGILVFLLGNCLNFISFGYA----AQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPV  135 (445)
Q Consensus        60 ~G~~l~~~g~il~~~Al~~a----p~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g~~~~~~  135 (445)
                      .|.+.+.....+.+.++.++    +.+...-+..+.=++..+++++++|||++++++.|+++..+|+.++....+    .
T Consensus        66 ~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~----~  141 (295)
T PRK11689         66 AGGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDN----G  141 (295)
T ss_pred             HHhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCc----c
Confidence            33333444445555555443    445555666777789999999999999999999999999999987764211    0


Q ss_pred             CCHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCchhhhhhhhHHHHHHHhhhhhHHHHHHHHHHHH
Q 013305          136 YTPEQLAEKY-SNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNL  214 (445)
Q Consensus       136 ~t~~eL~~~~-~~~~fl~y~~i~iviv~l~~~~~r~~~~~~~~~g~~~~~~~~l~~l~y~~~sGllgg~svl~aK~~~~l  214 (445)
                      .+.+++.... .++.=..+..+..+..+......|+-.       ++.      .++.+...   .++.....    ...
T Consensus       142 ~~~~~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~-------~~~------~~~~~~~~---~~~~~l~~----~~~  201 (295)
T PRK11689        142 LSLAELINNIASNPLSYGLAFIGAFIWAAYCNVTRKYA-------RGK------NGITLFFI---LTALALWI----KYF  201 (295)
T ss_pred             chhhhhhhccccChHHHHHHHHHHHHHHHHHHHHhhcc-------CCC------CchhHHHH---HHHHHHHH----HHH
Confidence            1111110000 011001111111111111111223211       110      01111111   11111111    001


Q ss_pred             HHHHhccCc-cchhHHHHHHHHH-HHHHHHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHH
Q 013305          215 LRLAMSNGY-QLHSWFTYSMLLL-FFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRAT  292 (445)
Q Consensus       215 l~~ti~g~~-qf~~w~tY~llv~-~v~~~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~  292 (445)
                      .    .+.. .-.++..+..++. .+.+.+. ..+.|+++++.+++.+.+. .-..++++++.|.++++|..+  +.   
T Consensus       202 ~----~~~~~~~~~~~~~~~l~~~~~~t~~~-~~l~~~al~~~~a~~~s~~-~~l~Pv~a~i~~~~~lgE~~~--~~---  270 (295)
T PRK11689        202 L----SPQPAMVFSLPAIIKLLLAAAAMGFG-YAAWNVGILHGNMTLLATA-SYFTPVLSAALAALLLSTPLS--FS---  270 (295)
T ss_pred             H----hcCccccCCHHHHHHHHHHHHHHHHH-HHHHHHHHHccCHHHHHHH-HHhHHHHHHHHHHHHhCCCCc--HH---
Confidence            1    1211 1122333332222 2333333 3445999999998865555 457899999999999999743  32   


Q ss_pred             HHHHHHHHHHHhhheecCC
Q 013305          293 MFILGTASVFIGISLLAPD  311 (445)
Q Consensus       293 ~~~~G~~vi~~GV~lLs~~  311 (445)
                       ..+|+++++.|+++....
T Consensus       271 -~~iG~~lI~~gv~~~~~~  288 (295)
T PRK11689        271 -FWQGVAMVTAGSLLCWLA  288 (295)
T ss_pred             -HHHHHHHHHHhHHHHhhh
Confidence             457888888888765443

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.31  E-value=4e-05  Score=79.26  Aligned_cols=220  Identities=11%  Similarity=0.167  Sum_probs=116.5

Q ss_pred             HHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHH------hccccccchhhhHHHhhhceeeEEeecCCC------CCC
Q 013305           68 GNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFV------FNKMVTVKVLVATAFIVLGNIFLVSFGNHQ------SPV  135 (445)
Q Consensus        68 g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~------l~E~~~~~~~~G~~lii~G~~liv~~g~~~------~~~  135 (445)
                      .+.+.+.++.+.+.+...=+..+.=++.++++.++      +|||+++++++|++++.+|+.++...+...      ++.
T Consensus        91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~  170 (358)
T PLN00411         91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPY  170 (358)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccccc
Confidence            33456789999999999999999999999999999      699999999999999999998765422210      000


Q ss_pred             CCHHHHH--HHhcchhHHHH-HHHHHHHHH--HHHHHHHhccccccccCCCchhhhhhhhHHHHHHHhhhhhHHHHHHHH
Q 013305          136 YTPEQLA--EKYSNITFLVY-CLILIFIVA--IYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKS  210 (445)
Q Consensus       136 ~t~~eL~--~~~~~~~fl~y-~~i~iviv~--l~~~~~r~~~~~~~~~g~~~~~~~~l~~l~y~~~sGllgg~svl~aK~  210 (445)
                      .+..+..  ....+..++.- +.++...++  +...+.|+-.+   +.+.         ...+....+++++.-....  
T Consensus       171 ~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~---~~~~---------~~~~t~~~~~~~~~~~~~~--  236 (358)
T PLN00411        171 LNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMS---EYPA---------AFTVSFLYTVCVSIVTSMI--  236 (358)
T ss_pred             ccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCc---------HhHHHHHHHHHHHHHHHHH--
Confidence            0000000  00000111111 111111111  11112232110   0000         0111112222222211110  


Q ss_pred             HHHHHHHHhccC--cc-chhH--HHHHHHHHHHHHHHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhccccc
Q 013305          211 LSNLLRLAMSNG--YQ-LHSW--FTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQV  285 (445)
Q Consensus       211 ~~~ll~~ti~g~--~q-f~~w--~tY~llv~~v~~~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~  285 (445)
                       + .+.   ++.  .. ...|  ..+.++...+++.+ -..+.|+++++-+++. ..++.-.-++++++.|.++++|...
T Consensus       237 -~-l~~---~~~~~~~~~~~~~~~~~~i~y~~i~t~l-ay~lw~~~v~~~ga~~-as~~~~L~PV~a~llg~l~LgE~lt  309 (358)
T PLN00411        237 -G-LVV---EKNNPSVWIIHFDITLITIVTMAIITSV-YYVIHSWTVRHKGPLY-LAIFKPLSILIAVVMGAIFLNDSLY  309 (358)
T ss_pred             -H-HHH---ccCCcccceeccchHHHHHHHHHHHHHH-HHHHHHHHHhccCchH-HHHHHhHHHHHHHHHHHHHhCCCCc
Confidence             0 111   111  11 1111  11222222222332 2334699999988884 4555668899999999999999753


Q ss_pred             CChHHHHHHHHHHHHHHHhhheecCCCCC
Q 013305          286 FDALRATMFILGTASVFIGISLLAPDESK  314 (445)
Q Consensus       286 ~~~~~~~~~~~G~~vi~~GV~lLs~~~~~  314 (445)
                        +.    -++|.++++.|+++..+.+.+
T Consensus       310 --~~----~~iG~~LIl~Gv~l~~~~~~~  332 (358)
T PLN00411        310 --LG----CLIGGILITLGFYAVMWGKAN  332 (358)
T ss_pred             --HH----HHHHHHHHHHHHHHHHhhhhh
Confidence              33    447888999999997765443

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=98.25  E-value=9.8e-07  Score=76.89  Aligned_cols=107  Identities=20%  Similarity=0.248  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHhhhhhhccccCCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhc-hhhHHH
Q 013305           16 IAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALG-SVQFVS   94 (445)
Q Consensus        16 ~l~a~G~~lqK~a~~~~~~~~~~~~~g~~g~~~~~~ll~~p~W~~G~~l~~~g~il~~~Al~~ap~slV~PLg-al~lv~   94 (445)
                      ++-+..+-+.||+....++...+    .+-....+.+++||..+++++++..|.+.-+..++-+|+|+..|+. ++++++
T Consensus         6 ~~WG~Tnpfik~g~~~~~~~~~~----~~~~~~~~~Ll~n~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvf   81 (113)
T PF10639_consen    6 ILWGCTNPFIKRGSSGLEKVKAS----LQLLQEIKFLLLNPKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVF   81 (113)
T ss_pred             HHhcCchHHHHHHHhhcCCccch----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHH
Confidence            34456677888887654321110    0012334568899999999999999999999999999999999995 999999


Q ss_pred             HHHHHHHHhccccccchhhhHHHhhhceeeEE
Q 013305           95 NIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV  126 (445)
Q Consensus        95 ~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv  126 (445)
                      +++.++++.+|..+++.++|+.+++.|+.+.+
T Consensus        82 T~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lcv  113 (113)
T PF10639_consen   82 TALTGWLLGEEVISRRTWLGMALILAGVALCV  113 (113)
T ss_pred             HHHHHHHhcCcccchhHHHHHHHHHcCeeeeC
Confidence            99999777667777888999999999988753

Many members are annotated as potential transmembrane proteins.

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.24  E-value=5e-05  Score=75.84  Aligned_cols=67  Identities=16%  Similarity=0.212  Sum_probs=60.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeE
Q 013305           58 WRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFL  125 (445)
Q Consensus        58 W~~G~~l~~~g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~li  125 (445)
                      ...|+. +.+...++..++.+.+.+..+-+.+++-++..+++++++|||++++++.|.+++++|+.+.
T Consensus        69 ~~~g~~-~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~  135 (302)
T TIGR00817        69 LPVAIV-HTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA  135 (302)
T ss_pred             HHHHHH-HHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh
Confidence            456666 5678888999999999999999999999999999999999999999999999999999754

specificities overlap.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.24  E-value=0.00011  Score=71.00  Aligned_cols=212  Identities=15%  Similarity=0.159  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHH-HHhccccccchhhhHHHhhhceeeEEeecCCCCCCCC
Q 013305           59 RVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSY-FVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYT  137 (445)
Q Consensus        59 ~~G~~l~~~g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~-~~l~E~~~~~~~~G~~lii~G~~liv~~g~~~~~~~t  137 (445)
                      ..|...+..+..+.+.++...+.+..+++.+..-++..+++. +++|||++++++.|..+...|+.++...+..+...  
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~--  151 (292)
T COG0697          74 LLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGIL--  151 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhH--
Confidence            345555567888888999999999999999999999999997 77799999999999999999988776543322211  


Q ss_pred             HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCchhhhhhhhHH-HHHHHhhhhhHHHHHHHHHHHHHH
Q 013305          138 PEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFS-YAIVSGAVGSFSVLFAKSLSNLLR  216 (445)
Q Consensus       138 ~~eL~~~~~~~~fl~y~~i~iviv~l~~~~~r~~~~~~~~~g~~~~~~~~l~~l~-y~~~sGllgg~svl~aK~~~~ll~  216 (445)
                               ...-..+.....+..++.....|+-       .+..    ...... +...    ......        +.
T Consensus       152 ---------~~~g~~~~l~a~~~~a~~~~~~~~~-------~~~~----~~~~~~~~~~~----~~~~~~--------~~  199 (292)
T COG0697         152 ---------SLLGLLLALAAALLWALYTALVKRL-------SRLG----PVTLALLLQLL----LALLLL--------LL  199 (292)
T ss_pred             ---------HHHHHHHHHHHHHHHHHHHHHHHHh-------cCCC----hHHHHHHHHHH----HHHHHH--------HH
Confidence                     0001112222222222211122211       0000    001111 1111    001000        00


Q ss_pred             HHhccCccchhHHHHHHHHH-HHHHHHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHH
Q 013305          217 LAMSNGYQLHSWFTYSMLLL-FFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFI  295 (445)
Q Consensus       217 ~ti~g~~qf~~w~tY~llv~-~v~~~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~  295 (445)
                      ......+....+..+..++. .++....-..+.+++++..++..+.+.. ...++.+++.+.++++|.-+  ..    ..
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~l~~~e~~~--~~----~~  272 (292)
T COG0697         200 FFLSGFGAPILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLS-LLEPVFAALLGVLLLGEPLS--PA----QL  272 (292)
T ss_pred             HHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHH-HHHHHHHHHHHHHHhCCCCc--HH----HH
Confidence            01111111122333332222 2222223345568999999999877776 67777888899999999743  33    33


Q ss_pred             HHHHHHHHhhheecCC
Q 013305          296 LGTASVFIGISLLAPD  311 (445)
Q Consensus       296 ~G~~vi~~GV~lLs~~  311 (445)
                      +|.++++.|+.+...+
T Consensus       273 ~G~~li~~g~~l~~~~  288 (292)
T COG0697         273 LGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            5667788888887655

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=98.24  E-value=5.3e-05  Score=75.51  Aligned_cols=212  Identities=14%  Similarity=0.047  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHHHHHHHHH-hhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeecCCCCCCCC
Q 013305           59 RVGILVFLLGNCLNFISF-GYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYT  137 (445)
Q Consensus        59 ~~G~~l~~~g~il~~~Al-~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g~~~~~~~t  137 (445)
                      +.|....+++..+.+.++ ...|.....-+..+.=++..+++.+ +|||++++++.|.++.++|+.++...  ++ ...+
T Consensus        73 ~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~--~~-~~~~  148 (292)
T PRK11272         73 LIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG--GN-LSGN  148 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC--cc-cccc
Confidence            345555555566667777 8888888888888888889999975 79999999999999999998765321  11 1100


Q ss_pred             HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCchhhhhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 013305          138 PEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRL  217 (445)
Q Consensus       138 ~~eL~~~~~~~~fl~y~~i~iviv~l~~~~~r~~~~~~~~~g~~~~~~~~l~~l~y~~~sGllgg~svl~aK~~~~ll~~  217 (445)
                               ..+ ..+..+..+..+......|+..       ++..    .....|....|   +......   . ..  
T Consensus       149 ---------~~G-~l~~l~a~~~~a~~~~~~~~~~-------~~~~----~~~~~~~~~~~---~~~~~~~---~-~~--  198 (292)
T PRK11272        149 ---------PWG-AILILIASASWAFGSVWSSRLP-------LPVG----MMAGAAEMLAA---GVVLLIA---S-LL--  198 (292)
T ss_pred             ---------hHH-HHHHHHHHHHHHHHHHHHHhcC-------CCcc----hHHHHHHHHHH---HHHHHHH---H-HH--
Confidence                     011 1111111111111111222211       1100    01112222211   1111000   0 01  


Q ss_pred             HhccCc--cchhHHHHHH-HHHHHHHHHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHH
Q 013305          218 AMSNGY--QLHSWFTYSM-LLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMF  294 (445)
Q Consensus       218 ti~g~~--qf~~w~tY~l-lv~~v~~~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~  294 (445)
                        .+.+  ...++..|.. +...+.+...-..+.|+++++.+++.+... ....++++.+.|.++++|..  ++.    .
T Consensus       199 --~~~~~~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~-~~l~Pi~a~i~~~~~l~E~~--t~~----~  269 (292)
T PRK11272        199 --SGERLTALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSY-AYVNPVVAVLLGTGLGGETL--SPI----E  269 (292)
T ss_pred             --cCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH-HHHHHHHHHHHHHHHcCCCC--cHH----H
Confidence              1211  1123333332 222333344444556999999988766655 66889999999999999973  333    4


Q ss_pred             HHHHHHHHHhhheecCCCC
Q 013305          295 ILGTASVFIGISLLAPDES  313 (445)
Q Consensus       295 ~~G~~vi~~GV~lLs~~~~  313 (445)
                      .+|+++++.|+++++.++.
T Consensus       270 iiG~~lIi~gv~~~~~~~~  288 (292)
T PRK11272        270 WLALGVIVFAVVLVTLGKY  288 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            5788889999988876543

>COG2510 Predicted membrane protein [Function unknown]

Probab=98.20  E-value=8e-06  Score=72.43  Aligned_cols=114  Identities=18%  Similarity=0.235  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhcccc-C--CC------------CCCCCCccccccccccchh----HHHHHHHHHHH
Q 013305            9 FINLVGSIAINFGTNLLKLGHIEREKHS-T--LD------------SDGTNGKHSLKPIVHYHSW----RVGILVFLLGN   69 (445)
Q Consensus         9 ~Lal~ss~l~a~G~~lqK~a~~~~~~~~-~--~~------------~~g~~g~~~~~~ll~~p~W----~~G~~l~~~g~   69 (445)
                      +.|+.++++.++..++-|.+....+..- +  .+            ..   |......-...+.|    ..| +.-+++.
T Consensus         6 ~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~---g~~~~~~~~~~k~~lflilSG-la~glsw   81 (140)
T COG2510           6 IYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVT---GNWQAGGEIGPKSWLFLILSG-LAGGLSW   81 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhc---CceecccccCcceehhhhHHH-HHHHHHH
Confidence            6889999999999999998865321100 0  00            00   00000000111223    233 4455777


Q ss_pred             HHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEE
Q 013305           70 CLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV  126 (445)
Q Consensus        70 il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv  126 (445)
                      ++-|.|+.-+++|.|+|+-.++.++..+++..+|||+++...|+|+++|++|++++.
T Consensus        82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510          82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence            777899999999999999999999999999999999999999999999999998764

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.18  E-value=0.0006  Score=68.07  Aligned_cols=263  Identities=13%  Similarity=0.080  Sum_probs=133.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCC-CCCCCC-----c-cccccccccc----hhHHHHHHHHHHHHHHH
Q 013305            5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLD-SDGTNG-----K-HSLKPIVHYH----SWRVGILVFLLGNCLNF   73 (445)
Q Consensus         5 ~IGi~Lal~ss~l~a~G~~lqK~a~~~~~~~~~~~-~~g~~g-----~-~~~~~ll~~p----~W~~G~~l~~~g~il~~   73 (445)
                      ..|+.+.+++.++.+.+..+-|.+....+....-. +.....     . ...+.-.+++    .++.|.. +.+.+.+.+
T Consensus        11 ~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~   89 (293)
T PRK10532         11 WLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVS-LGGMNYLFY   89 (293)
T ss_pred             chHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHH-HHHHHHHHH
Confidence            45788999999999999999997754211000000 000000     0 0000001122    2356654 566677778


Q ss_pred             HHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeecCCCCCCCCHHHHHHHhcchhHHHH
Q 013305           74 ISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVY  153 (445)
Q Consensus        74 ~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g~~~~~~~t~~eL~~~~~~~~fl~y  153 (445)
                      .++.+.|.+...-+..+.=++..+++    +|+..  ++.+..+.++|+.+++..+... ...+   .      .+. .+
T Consensus        90 ~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~--~~~~~~i~~~Gv~li~~~~~~~-~~~~---~------~G~-ll  152 (293)
T PRK10532         90 LSIQTVPLGIAVALEFTGPLAVALFS----SRRPV--DFVWVVLAVLGLWFLLPLGQDV-SHVD---L------TGA-AL  152 (293)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHh----cCChH--HHHHHHHHHHHHheeeecCCCc-ccCC---h------HHH-HH
Confidence            89999999877666655555555554    25443  4566777888988766432211 1111   0      011 11


Q ss_pred             HHHHHHHHHHHHHHHHhccccccccCCCchhhhhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccCccchhHHHHHH
Q 013305          154 CLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSM  233 (445)
Q Consensus       154 ~~i~iviv~l~~~~~r~~~~~~~~~g~~~~~~~~l~~l~y~~~sGllgg~svl~aK~~~~ll~~ti~g~~qf~~w~tY~l  233 (445)
                      .....+..+......|+..+      +.+    . ....+   ..++++... ..  +.  .   ..+.....++..+..
T Consensus       153 ~l~aa~~~a~~~v~~r~~~~------~~~----~-~~~~~---~~~~~~~~l-~~--~~--~---~~~~~~~~~~~~~~~  210 (293)
T PRK10532        153 ALGAGACWAIYILSGQRAGA------EHG----P-ATVAI---GSLIAALIF-VP--IG--A---LQAGEALWHWSILPL  210 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHhc------cCC----c-hHHHH---HHHHHHHHH-HH--HH--H---HccCcccCCHHHHHH
Confidence            11111111221112232110      000    0 01111   112222111 10  11  0   111111234444432


Q ss_pred             -HHHHHHHHHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHHHhhheecCCC
Q 013305          234 -LLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDE  312 (445)
Q Consensus       234 -lv~~v~~~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lLs~~~  312 (445)
                       +...+++...+....|+++++.+++.+.+. ....++++++.|.++|+|..  ++.    ..+|.++++.|+......+
T Consensus       211 ~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~-~~l~Pv~a~l~~~l~lgE~~--~~~----~~iG~~lIl~~~~~~~~~~  283 (293)
T PRK10532        211 GLAVAILSTALPYSLEMIALTRLPTRTFGTL-MSMEPALAAVSGMIFLGETL--TLI----QWLALGAIIAASMGSTLTI  283 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcChhHHHHH-HHhHHHHHHHHHHHHhCCCC--cHH----HHHHHHHHHHHHHHHHhcC
Confidence             334455566676677999999999866655 55889999999999999974  343    3456666777777665554


Q ss_pred             CC
Q 013305          313 SK  314 (445)
Q Consensus       313 ~~  314 (445)
                      .+
T Consensus       284 ~~  285 (293)
T PRK10532        284 RR  285 (293)
T ss_pred             CC
Confidence            44

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.10  E-value=0.00035  Score=71.92  Aligned_cols=69  Identities=16%  Similarity=0.149  Sum_probs=58.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEE
Q 013305           57 SWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV  126 (445)
Q Consensus        57 ~W~~G~~l~~~g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv  126 (445)
                      ....|+.-. .+..+...++.+.+++..+=+-+++=++.++++++++|||++++.+.+++++++|+.+.+
T Consensus       117 llp~gl~~~-~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~  185 (350)
T PTZ00343        117 FLPQGLCHL-FVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS  185 (350)
T ss_pred             HHHHHHHHH-HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence            344555433 345556699999999999999999999999999999999999999999999999999865

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=98.08  E-value=0.00058  Score=68.55  Aligned_cols=227  Identities=17%  Similarity=0.208  Sum_probs=128.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeecCCCCCCCC
Q 013305           58 WRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYT  137 (445)
Q Consensus        58 W~~G~~l~~~g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g~~~~~~~t  137 (445)
                      +..+ .++.++..++-.|+.+.|...-+=+-+...+++++++.+++|+|.+++++++++++++|++++.....++.+..+
T Consensus        68 ~~~~-~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~  146 (303)
T PF08449_consen   68 AILS-FLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSN  146 (303)
T ss_pred             HHHH-HHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccc
Confidence            4555 456688889999999999999999999999999999999999999999999999999999988776544433222


Q ss_pred             HHHHHHHhcchhHHHHHHHHHHHHHHH-HHHHHhccccccccCCCchhhhhhhhHHHHHHHhhhhhHHHHHH-HHHHHHH
Q 013305          138 PEQLAEKYSNITFLVYCLILIFIVAIY-HYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFA-KSLSNLL  215 (445)
Q Consensus       138 ~~eL~~~~~~~~fl~y~~i~iviv~l~-~~~~r~~~~~~~~~g~~~~~~~~l~~l~y~~~sGllgg~svl~a-K~~~~ll  215 (445)
                      .++     .++.. -++.+++-.++-. ...+.  |+....++...  +   ..+.|--.-|+......... + -.+ .
T Consensus       147 ~~~-----~~~~~-G~~ll~~sl~~~a~~~~~q--e~~~~~~~~~~--~---~~mfy~n~~~~~~~~~~~~~l~-~~~-~  211 (303)
T PF08449_consen  147 SSS-----FSSAL-GIILLLLSLLLDAFTGVYQ--EKLFKKYGKSP--W---ELMFYTNLFSLPFLLILLFLLP-TGE-F  211 (303)
T ss_pred             ccc-----ccchh-HHHHHHHHHHHHHHHHHHH--HHHHHHhCCcH--H---HHHHHHHHHHHHHHHHHHHHHH-hhH-h
Confidence            211     01110 1111111111100 01110  11111112221  1   23444444344322222111 1 111 1


Q ss_pred             HHHhccCccchhHHHHHHHHHHHHHHHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHH
Q 013305          216 RLAMSNGYQLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFI  295 (445)
Q Consensus       216 ~~ti~g~~qf~~w~tY~llv~~v~~~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~  295 (445)
                      ...+  +....||..+..++...++...-..+.+.-.+++++... -+....=...+++.++++|++  ++++.++    
T Consensus       212 ~~~~--~f~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~-t~v~t~Rk~~sillS~~~f~~--~~~~~~~----  282 (303)
T PF08449_consen  212 RSAI--RFISAHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTT-TIVTTLRKFLSILLSVIIFGH--PLSPLQW----  282 (303)
T ss_pred             hHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhh-hhHHHHHHHHHHHHHHHhcCC--cCChHHH----
Confidence            1111  111256666655555444433333455666778877644 444555678889999999986  4556555    


Q ss_pred             HHHHHHHHhhheec
Q 013305          296 LGTASVFIGISLLA  309 (445)
Q Consensus       296 ~G~~vi~~GV~lLs  309 (445)
                      .|.++++.|+.+=+
T Consensus       283 ~G~~lv~~g~~~~~  296 (303)
T PF08449_consen  283 IGIVLVFAGIFLYS  296 (303)
T ss_pred             HHHHHhHHHHHHHH
Confidence            45556677766533

; GO: 0055085 transmembrane transport

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.07  E-value=5.7e-06  Score=71.27  Aligned_cols=66  Identities=26%  Similarity=0.425  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEe
Q 013305           61 GILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS  127 (445)
Q Consensus        61 G~~l~~~g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~  127 (445)
                      |++...++..+.+.|+.++| ..++++.+++.+++.+++.+++|||++++++.|++++.+|++++..
T Consensus        41 g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~  106 (113)
T PF13536_consen   41 GLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAW  106 (113)
T ss_pred             HHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhh
Confidence            45555578999999999999 5899999999999999999999999999999999999999987765

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.97  E-value=5.4e-05  Score=66.78  Aligned_cols=99  Identities=14%  Similarity=0.141  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhc-h
Q 013305           11 NLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALG-S   89 (445)
Q Consensus        11 al~ss~l~a~G~~lqK~a~~~~~~~~~~~~~g~~g~~~~~~ll~~p~W~~G~~l~~~g~il~~~Al~~ap~slV~PLg-a   89 (445)
                      -+.+.++-..|....|++...+            +         ...|+..+.++++++.+...|+...|+++.+|+- +
T Consensus         7 L~~Ai~~Ev~~t~~LK~s~g~~------------~---------~~~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~G   65 (120)
T PRK10452          7 LALAIATEITGTLSMKWASVSE------------G---------NGGFILMLVMISLSYIFLSFAVKKIALGVAYALWEG   65 (120)
T ss_pred             HHHHHHHHHHHHHHHHhhccCC------------C---------cHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHH
Confidence            3455666777888888773210            0         1136778888889999999999999999999994 6


Q ss_pred             hhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeecC
Q 013305           90 VQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGN  130 (445)
Q Consensus        90 l~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g~  130 (445)
                      ++.+...+.+.+++||+++..+++|..++++|++++=..++
T Consensus        66 iG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~  106 (120)
T PRK10452         66 IGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTR  106 (120)
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence            99999999999999999999999999999999987755443

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.93  E-value=0.00038  Score=69.36  Aligned_cols=215  Identities=17%  Similarity=0.190  Sum_probs=117.6

Q ss_pred             hhHHHHHH---HHHHHHHHHHHHhhhhhHHHhhhch-hhHHHHHHHHHHHhccccccchhh----hHHHhhhceeeEEee
Q 013305           57 SWRVGILV---FLLGNCLNFISFGYAAQSLLAALGS-VQFVSNIAFSYFVFNKMVTVKVLV----ATAFIVLGNIFLVSF  128 (445)
Q Consensus        57 ~W~~G~~l---~~~g~il~~~Al~~ap~slV~PLga-l~lv~~~l~a~~~l~E~~~~~~~~----G~~lii~G~~liv~~  128 (445)
                      .|+.+++.   -.+|+++|+.++...-.|...|+.. .+++.|.+.+.+++||--+..+++    +.+++++|+++....
T Consensus        44 ~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~  123 (269)
T PF06800_consen   44 SFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQ  123 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccc
Confidence            36665553   4579999999999999999999994 899999999999999977766644    778899998876664


Q ss_pred             cCCCCCCCCHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCchhhhhhhhHHHHHHHhhhhhHHHHHH
Q 013305          129 GNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFA  208 (445)
Q Consensus       129 g~~~~~~~t~~eL~~~~~~~~fl~y~~i~iviv~l~~~~~r~~~~~~~~~g~~~~~~~~l~~l~y~~~sGllgg~svl~a  208 (445)
                      ..++++..+..+..     ... .+    +++..+.++.|..-.+....+     .|....|...    |++-+-.+...
T Consensus       124 ~~~~~~~~~~~~~~-----kgi-~~----Ll~stigy~~Y~~~~~~~~~~-----~~~~~lPqai----Gm~i~a~i~~~  184 (269)
T PF06800_consen  124 DKKSDKSSSKSNMK-----KGI-LA----LLISTIGYWIYSVIPKAFHVS-----GWSAFLPQAI----GMLIGAFIFNL  184 (269)
T ss_pred             cccccccccccchh-----hHH-HH----HHHHHHHHHHHHHHHHhcCCC-----hhHhHHHHHH----HHHHHHHHHhh
Confidence            44443322222211     111 11    111122233332211100001     1122222222    22211111111


Q ss_pred             HHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHHHHH-H-hhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccC
Q 013305          209 KSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTAGFWMAR-L-NEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVF  286 (445)
Q Consensus       209 K~~~~ll~~ti~g~~qf~~w~tY~llv~~v~~~l~Ql~~-L-N~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~  286 (445)
                      +.           ++++.+-.+|.=++..++-.+.=+.| + ++  + --.+.-+|+-|.. .+.+.++|+.+|||..  
T Consensus       185 ~~-----------~~~~~~k~~~~nil~G~~w~ignl~~~is~~--~-~G~a~af~lSQ~~-vvIStlgGI~il~E~K--  247 (269)
T PF06800_consen  185 FS-----------KKPFFEKKSWKNILTGLIWGIGNLFYLISAQ--K-NGVATAFTLSQLG-VVISTLGGIFILKEKK--  247 (269)
T ss_pred             cc-----------cccccccchHHhhHHHHHHHHHHHHHHHhHH--h-ccchhhhhHHhHH-HHHHHhhhheEEEecC--
Confidence            10           12222223333222222211111111 1 22  1 1223455666665 6688899999999986  


Q ss_pred             ChHHHHHHHHHHHHHHHhhhe
Q 013305          287 DALRATMFILGTASVFIGISL  307 (445)
Q Consensus       287 ~~~~~~~~~~G~~vi~~GV~l  307 (445)
                      +........+|+++++.|.++
T Consensus       248 t~ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  248 TKKEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             chhhHHHHHHHHHHHHHhhhc
Confidence            346778888999999888765

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.82  E-value=0.00013  Score=63.40  Aligned_cols=97  Identities=16%  Similarity=0.166  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCCccccccccccch-hHHHHHHHHHHHHHHHHHHhhhhhHHHhhh-c
Q 013305           11 NLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHS-WRVGILVFLLGNCLNFISFGYAAQSLLAAL-G   88 (445)
Q Consensus        11 al~ss~l~a~G~~lqK~a~~~~~~~~~~~~~g~~g~~~~~~ll~~p~-W~~G~~l~~~g~il~~~Al~~ap~slV~PL-g   88 (445)
                      -+++.++-..|....|++.               |.       +++. ++..+.+|+++..+...|+...|+++..|+ .
T Consensus         7 L~~a~~~Ev~~~~~lK~s~---------------gf-------~~~~~~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~   64 (110)
T PRK09541          7 LGGAILAEVIGTTLMKFSE---------------GF-------TRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWS   64 (110)
T ss_pred             HHHHHHHHHHHHHHHHHhc---------------CC-------CchhHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHH
Confidence            3455677777888888773               11       1122 356677778888888899999999999999 5


Q ss_pred             hhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeec
Q 013305           89 SVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFG  129 (445)
Q Consensus        89 al~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g  129 (445)
                      +++.+.+.+.+.+++||+++..+++|..++++|++++-..+
T Consensus        65 GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~  105 (110)
T PRK09541         65 GVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            69999999999999999999999999999999998875433

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.68  E-value=0.00089  Score=69.03  Aligned_cols=300  Identities=10%  Similarity=0.042  Sum_probs=148.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhhhhh-ccccC----------CCCCCCCCcccccccc---ccchhHHHHH---HH
Q 013305            3 EWVIGAFINLVGSIAINFGTNLLKLGHIER-EKHST----------LDSDGTNGKHSLKPIV---HYHSWRVGIL---VF   65 (445)
Q Consensus         3 ~~~IGi~Lal~ss~l~a~G~~lqK~a~~~~-~~~~~----------~~~~g~~g~~~~~~ll---~~p~W~~G~~---l~   65 (445)
                      +..+|++..+++.++.+.=.+-|||...=+ |.-..          +---+--+...+.+++   ....|..+++   +-
T Consensus         4 ~~~~G~~~~~i~~~~~GS~~~p~K~~k~w~wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~~W   83 (345)
T PRK13499          4 AIILGIIWHLIGGASSGSFYAPFKKVKKWSWETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGALW   83 (345)
T ss_pred             hhHHHHHHHHHHHHHhhcccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHHHH
Confidence            567799999999999988888888842111 00000          0000000000001111   1234544443   34


Q ss_pred             HHHHHHHHHHHhhhhhHHHhhhch-hhHHHHHHHHHHHhcccc---c----cchhhhHHHhhhceeeEEeecCCCCCCCC
Q 013305           66 LLGNCLNFISFGYAAQSLLAALGS-VQFVSNIAFSYFVFNKMV---T----VKVLVATAFIVLGNIFLVSFGNHQSPVYT  137 (445)
Q Consensus        66 ~~g~il~~~Al~~ap~slV~PLga-l~lv~~~l~a~~~l~E~~---~----~~~~~G~~lii~G~~liv~~g~~~~~~~t  137 (445)
                      .+|++.++.++.+.-+|+-.|++. ++++.+.++..+++||=-   +    ....+|++++++|+++....+...++..+
T Consensus        84 ~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~~~~~  163 (345)
T PRK13499         84 GIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKERKMG  163 (345)
T ss_pred             HhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhcccccc
Confidence            679999999999999999999987 889999999999998632   2    23467999999999988776654444332


Q ss_pred             HHHHHHHhcchhHHHHHHHHHHH-HHHHHHHHHhcccc---ccccCCCchhhhhhhhHHHHHHHhhhhhHHHHHHHHHHH
Q 013305          138 PEQLAEKYSNITFLVYCLILIFI-VAIYHYIYRKGENL---LAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSN  213 (445)
Q Consensus       138 ~~eL~~~~~~~~fl~y~~i~ivi-v~l~~~~~r~~~~~---~~~~g~~~~~~~~l~~l~y~~~sGllgg~svl~aK~~~~  213 (445)
                      .||-.+.-..-.. +.+.+..+. .+.. +....+...   .+..|.+. .+ ...+...+..-   |++..-+.=+...
T Consensus       164 ~~~~~~~~~~KGi-~ialisgi~~~~f~-~~~~~~~~~~~~a~~~g~~~-~~-~~lp~~~~~~~---G~~~~n~~~~~~~  236 (345)
T PRK13499        164 IKKAEEFNLKKGL-ILAVMSGIFSACFS-FAMDAGKPMHEAAAALGVDP-LY-AALPSYVVIMG---GGAITNLGFCFIR  236 (345)
T ss_pred             cccccccchHhHH-HHHHHHHHHHHHHH-HHHhhccchhhhhhhcCCCc-hH-HHHHHHHHHHH---HHHHHHHHHHHHH
Confidence            2110011111121 122111111 1111 111111110   00112211 11 11222212212   2221111000111


Q ss_pred             HHH-HHhccCccchh-----HHHHHHHHHHHHHHHHHHHHH--hhhhcccc--cceehhhHHHHHHHHHHHHHHhhhccc
Q 013305          214 LLR-LAMSNGYQLHS-----WFTYSMLLLFFSTAGFWMARL--NEGLSLFD--AILIVPMFQIAWTSFSICTGFVYFQEY  283 (445)
Q Consensus       214 ll~-~ti~g~~qf~~-----w~tY~llv~~v~~~l~Ql~~L--N~aL~~~d--a~~VvPv~~v~~t~~si~~G~i~f~E~  283 (445)
                      +-+ ++.+....+..     +..|++-.+.-+.=..|..+.  -.+ +..+  +....++-+-...+++.+.|+ +++|+
T Consensus       237 ~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~-~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~  314 (345)
T PRK13499        237 LAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHS-KLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEW  314 (345)
T ss_pred             HhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCccchHHHHHhccHHHHHHHHhhh-hhhhc
Confidence            011 11100011211     344443333322233443332  222 1111  111233444555577888888 59999


Q ss_pred             ccCChHHHHHHHHHHHHHHHhhheecCC
Q 013305          284 QVFDALRATMFILGTASVFIGISLLAPD  311 (445)
Q Consensus       284 ~~~~~~~~~~~~~G~~vi~~GV~lLs~~  311 (445)
                      ...+........+|+++++.|.+++.-.
T Consensus       315 K~a~~k~~~~l~~G~vliI~g~~lig~~  342 (345)
T PRK13499        315 KGASRRPVRVLSLGCVVIILAANIVGLG  342 (345)
T ss_pred             cCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence            9988888899999999999999887643

>TIGR00688 rarD rarD protein

Probab=97.68  E-value=0.0044  Score=60.33  Aligned_cols=62  Identities=10%  Similarity=0.026  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEE
Q 013305           65 FLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV  126 (445)
Q Consensus        65 ~~~g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv  126 (445)
                      +.++..+.+.|+...|.+...-+..+.=++..+++++++|||+++++|+|+++..+|+++++
T Consensus        80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~  141 (256)
T TIGR00688        80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI  141 (256)
T ss_pred             HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            55678888899999999988888888889999999999999999999999999999988654

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=97.57  E-value=0.0014  Score=64.42  Aligned_cols=73  Identities=18%  Similarity=0.354  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeecCC
Q 013305           59 RVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNH  131 (445)
Q Consensus        59 ~~G~~l~~~g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g~~  131 (445)
                      .+=-++|.+.+.+.++++...+.+.-|=+...-++++.+++.++||+|+++++|++.++.++|++++-.....
T Consensus        21 ~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~   93 (244)
T PF04142_consen   21 AVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ   93 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence            3344679999999999999999999999999999999999999999999999999999999998876654443

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=97.55  E-value=0.00028  Score=70.48  Aligned_cols=125  Identities=14%  Similarity=0.063  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCC-CCC--------c-cccccccccc----hhHHHHHHHHHHHH
Q 013305            5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDG-TNG--------K-HSLKPIVHYH----SWRVGILVFLLGNC   70 (445)
Q Consensus         5 ~IGi~Lal~ss~l~a~G~~lqK~a~~~~~~~~~~~~~g-~~g--------~-~~~~~ll~~p----~W~~G~~l~~~g~i   70 (445)
                      .+|.+++++++++.++...+.|+...+.+.... . .. .-+        . ..........    .++.|++..+++..
T Consensus       147 ~~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~  224 (293)
T PRK10532        147 LTGAALALGAGACWAIYILSGQRAGAEHGPATV-A-IGSLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYS  224 (293)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhccCCchHH-H-HHHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHH
Confidence            469999999999999999998887433211000 0 00 000        0 0000000111    24677777788889


Q ss_pred             HHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeecCC
Q 013305           71 LNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNH  131 (445)
Q Consensus        71 l~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g~~  131 (445)
                      ++..++...|.+.+.++..+.-+++.+++.+++||+++..+++|.++++.|+++.....++
T Consensus       225 l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~  285 (293)
T PRK10532        225 LEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRR  285 (293)
T ss_pred             HHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999999999999999999999999999998877655444

>COG2510 Predicted membrane protein [Function unknown]

Probab=97.41  E-value=0.00088  Score=59.67  Aligned_cols=114  Identities=18%  Similarity=0.257  Sum_probs=76.6

Q ss_pred             hHHHHHHHhhhhhHHHHHHHHHHH--------HHHH-----------HhccCccch---hHHHHHHHHH-HHHHHHHHHH
Q 013305          190 PFSYAIVSGAVGSFSVLFAKSLSN--------LLRL-----------AMSNGYQLH---SWFTYSMLLL-FFSTAGFWMA  246 (445)
Q Consensus       190 ~l~y~~~sGllgg~svl~aK~~~~--------ll~~-----------ti~g~~qf~---~w~tY~llv~-~v~~~l~Ql~  246 (445)
                      ...|+..++.+.|++.+++|..-+        .+++           ...|+.|-.   .+..|..+++ .+.+.+.|+.
T Consensus         4 ~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl~   83 (140)
T COG2510           4 AIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWLL   83 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHHH
Confidence            467778888888888888876533        1111           123433322   3344443333 3445555555


Q ss_pred             HHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHHHhhheecCC
Q 013305          247 RLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPD  311 (445)
Q Consensus       247 ~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lLs~~  311 (445)
                      | =+||+.++++.|+|+ --.....+++.+..+++|.....      -.+|++++.+|+++++.+
T Consensus        84 Y-f~ALk~G~as~VvPl-dk~svvl~~lls~lfL~E~ls~~------~~iG~~LI~~Gailvs~~  140 (140)
T COG2510          84 Y-FRALKKGKASRVVPL-DKTSVVLAVLLSILFLGERLSLP------TWIGIVLIVIGAILVSLR  140 (140)
T ss_pred             H-HHHHhcCCcceEEEc-ccccHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhCeeeEecC
Confidence            4 479999999999998 44667788899999999986543      347899999999998863

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=97.40  E-value=0.001  Score=55.77  Aligned_cols=85  Identities=15%  Similarity=0.111  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCCccccccccccchhH-HHHHHHHHHHHHHHHHHhhhhhHHHhhhc-h
Q 013305           12 LVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWR-VGILVFLLGNCLNFISFGYAAQSLLAALG-S   89 (445)
Q Consensus        12 l~ss~l~a~G~~lqK~a~~~~~~~~~~~~~g~~g~~~~~~ll~~p~W~-~G~~l~~~g~il~~~Al~~ap~slV~PLg-a   89 (445)
                      +++.++...|+...|+++..                      +++.|. ..+.+++++..+...|+...|.++..|+- +
T Consensus         7 ~~a~~~ev~~~~~lK~s~g~----------------------~~~~~~~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g   64 (93)
T PF00893_consen    7 LLAILFEVVGTIALKASHGF----------------------TQLIPTILAVVGYGLSFYFLSLALKKLPLSVAYAVWTG   64 (93)
T ss_dssp             HHHHHHHHHHHHH------------------------------------HHHHHHHHHHHHHHHHH-------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhh----------------------cchhhHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence            45556777788888885321                      112233 44446788989999999999999999975 5


Q ss_pred             hhHHHHHHHHHHHhccccccchhhhHHHh
Q 013305           90 VQFVSNIAFSYFVFNKMVTVKVLVATAFI  118 (445)
Q Consensus        90 l~lv~~~l~a~~~l~E~~~~~~~~G~~li  118 (445)
                      ++.+...+.+.+++||+++..++.|..+|
T Consensus        65 ~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   65 LGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            99999999999999999999999999875

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=97.27  E-value=0.00018  Score=60.81  Aligned_cols=68  Identities=16%  Similarity=0.335  Sum_probs=61.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeE
Q 013305           58 WRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFL  125 (445)
Q Consensus        58 W~~G~~l~~~g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~li  125 (445)
                      ...|.+...++..+...++...|.+.++++..++-+++.+++.+++||+++.+++.|+++++.|++++
T Consensus        57 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~  124 (126)
T PF00892_consen   57 LFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI  124 (126)
T ss_pred             hHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            45566656789999999999999999999999999999999999999999999999999999998764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=97.22  E-value=0.0012  Score=68.42  Aligned_cols=124  Identities=13%  Similarity=0.134  Sum_probs=84.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCC-C---C----------CCCcccccccc-ccchhHHHHHH---
Q 013305            3 EWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDS-D---G----------TNGKHSLKPIV-HYHSWRVGILV---   64 (445)
Q Consensus         3 ~~~IGi~Lal~ss~l~a~G~~lqK~a~~~~~~~~~~~~-~---g----------~~g~~~~~~ll-~~p~W~~G~~l---   64 (445)
                      +|.+|.++++.++++.++..++||+-..+......-.. .   +          .++. ....+. .-..++..++.   
T Consensus       186 ~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~i~y~~i  264 (358)
T PLN00411        186 DWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKN-NPSVWIIHFDITLITIVTMAI  264 (358)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccC-CcccceeccchHHHHHHHHHH
Confidence            36789999999999999999999986543211100000 0   0          0000 000000 00111112221   


Q ss_pred             -HHHHHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEe
Q 013305           65 -FLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS  127 (445)
Q Consensus        65 -~~~g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~  127 (445)
                       ..++..+|..++...+.+.+..+.-+.=+++++++..++||+++..+++|+++++.|+.+...
T Consensus       265 ~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~  328 (358)
T PLN00411        265 ITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMW  328 (358)
T ss_pred             HHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence             234777788899999999999999999999999999999999999999999999999887653

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=97.16  E-value=0.0028  Score=61.20  Aligned_cols=119  Identities=15%  Similarity=0.152  Sum_probs=84.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCC---C--CC-----CC-ccccccccccchh----HHHHHHHHHH
Q 013305            4 WVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDS---D--GT-----NG-KHSLKPIVHYHSW----RVGILVFLLG   68 (445)
Q Consensus         4 ~~IGi~Lal~ss~l~a~G~~lqK~a~~~~~~~~~~~~---~--g~-----~g-~~~~~~ll~~p~W----~~G~~l~~~g   68 (445)
                      ...|+.++++++++.+....++|+...+.+.....-.   .  +.     -. ............|    +.|.+..+++
T Consensus       126 ~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (260)
T TIGR00950       126 NPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALA  205 (260)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHH
Confidence            3569999999999999999999997543211000000   0  00     00 0000000111223    2444555678


Q ss_pred             HHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhce
Q 013305           69 NCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGN  122 (445)
Q Consensus        69 ~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~  122 (445)
                      ..+++.++...|.+.+..+..+.-+++.+++.+++||+++..++.|+++++.|+
T Consensus       206 ~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       206 YFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            889999999999999999999999999999999999999999999999999986

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.05  E-value=0.0053  Score=53.35  Aligned_cols=97  Identities=12%  Similarity=0.109  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCCccccccccccchhHHH-HHHHHHHHHHHHHHHhhhhhHHHh
Q 013305            7 GAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVG-ILVFLLGNCLNFISFGYAAQSLLA   85 (445)
Q Consensus         7 Gi~Lal~ss~l~a~G~~lqK~a~~~~~~~~~~~~~g~~g~~~~~~ll~~p~W~~G-~~l~~~g~il~~~Al~~ap~slV~   85 (445)
                      ....-+++.++-..|....|++.               |.       ++|.|.+. +..+++++.+-..|+...|..+..
T Consensus         8 ~~~~L~~Ai~~Ev~~t~~Lk~s~---------------gf-------~~~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAY   65 (109)
T PRK10650          8 HAAWLALAIVLEIVANIFLKFSD---------------GF-------RRKIYGILSLAAVLAAFSALSQAVKGIDLSVAY   65 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc---------------CC-------cchHHHHHHHHHHHHHHHHHHHHHhhCchHHHH
Confidence            44455666777788888888772               11       12334333 333456666667888899999999


Q ss_pred             hhch-hhHHHHHHHHHHHhccccccchhhhHHHhhhceeeE
Q 013305           86 ALGS-VQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFL  125 (445)
Q Consensus        86 PLga-l~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~li  125 (445)
                      ++=+ ++.+...+.+.+++||+++..++.|..+++.|++++
T Consensus        66 AvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         66 ALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            9866 889999999999999999999999999999998764

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.03  E-value=0.0042  Score=53.60  Aligned_cols=92  Identities=15%  Similarity=0.088  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCCccccccccccch-hHHHHHHHHHHHHHHHHHHhhhhhHHHhhhch-
Q 013305           12 LVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHS-WRVGILVFLLGNCLNFISFGYAAQSLLAALGS-   89 (445)
Q Consensus        12 l~ss~l~a~G~~lqK~a~~~~~~~~~~~~~g~~g~~~~~~ll~~p~-W~~G~~l~~~g~il~~~Al~~ap~slV~PLga-   89 (445)
                      +++.++-..|...+|++.               |.       +++. +..-+.++.+++.+-..|+...|.++..++=+ 
T Consensus         7 ~~Ai~~Ev~~t~~Lk~s~---------------gf-------~~~~~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~G   64 (105)
T PRK11431          7 VIAGLLEVVWAVGLKYTH---------------GF-------SRLTPSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTG   64 (105)
T ss_pred             HHHHHHHHHHHHHHHhhh---------------CC-------ccHHHHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHH
Confidence            345566677777777762               11       1122 33445556777777788999999999999876 


Q ss_pred             hhHHHHHHHHHHHhccccccchhhhHHHhhhceeeE
Q 013305           90 VQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFL  125 (445)
Q Consensus        90 l~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~li  125 (445)
                      ++.+...+.+.+++||+++..++.|..+++.|++.+
T Consensus        65 iG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l  100 (105)
T PRK11431         65 IGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL  100 (105)
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence            899999999999999999999999999999998865

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=96.93  E-value=0.0037  Score=62.13  Aligned_cols=212  Identities=17%  Similarity=0.111  Sum_probs=118.4

Q ss_pred             HHHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEE----eecCCCCCCCCHHHHH
Q 013305           67 LGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV----SFGNHQSPVYTPEQLA  142 (445)
Q Consensus        67 ~g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv----~~g~~~~~~~t~~eL~  142 (445)
                      .|-.+..+||.+.|++=..-..-.+=+++.++|+.+|||+.++.+.+|......|+++++    +||..++.+.+..   
T Consensus       109 tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~---  185 (346)
T KOG4510|consen  109 TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQ---  185 (346)
T ss_pred             hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCcccccccc---
Confidence            466677889988888866555666778999999999999999999999999999999998    6776555433222   


Q ss_pred             HHhcchhHHHHHHHHHHHHH-HHHHHHHhccccccccCCCchhhhhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcc
Q 013305          143 EKYSNITFLVYCLILIFIVA-IYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSN  221 (445)
Q Consensus       143 ~~~~~~~fl~y~~i~iviv~-l~~~~~r~~~~~~~~~g~~~~~~~~l~~l~y~~~sGllgg~svl~aK~~~~ll~~ti~g  221 (445)
                      .-+..|.-.+  .+..++.+ -.+.+.|+-       ||+. +..  ..+.|=..-+++-++-.          -.+ -|
T Consensus       186 ~~~~~~gt~a--ai~s~lf~asvyIilR~i-------Gk~~-h~~--msvsyf~~i~lV~s~I~----------~~~-ig  242 (346)
T KOG4510|consen  186 VEYDIPGTVA--AISSVLFGASVYIILRYI-------GKNA-HAI--MSVSYFSLITLVVSLIG----------CAS-IG  242 (346)
T ss_pred             ccccCCchHH--HHHhHhhhhhHHHHHHHh-------hccc-cEE--EEehHHHHHHHHHHHHH----------Hhh-cc
Confidence            1234555222  22222211 122333432       2221 111  11222211111111110          001 12


Q ss_pred             Cccc-hhHHHH-HHHHHHHHHHHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHH
Q 013305          222 GYQL-HSWFTY-SMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTA  299 (445)
Q Consensus       222 ~~qf-~~w~tY-~llv~~v~~~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~  299 (445)
                      .-|+ +.|.=+ +++.+.+...+.| .+|.+|||.=.+-- +.++.+...+++.+.-+++|+|+..  .|.+    +|.+
T Consensus       243 ~~~lP~cgkdr~l~~~lGvfgfigQ-IllTm~lQiErAGp-vaim~~~dvvfAf~wqv~ff~~~Pt--~ws~----~Ga~  314 (346)
T KOG4510|consen  243 AVQLPHCGKDRWLFVNLGVFGFIGQ-ILLTMGLQIERAGP-VAIMTYTDVVFAFFWQVLFFGHWPT--IWSW----VGAV  314 (346)
T ss_pred             ceecCccccceEEEEEehhhhhHHH-HHHHHHhhhhccCC-eehhhHHHHHHHHHHHHHHhcCCCh--HHHh----hcee
Confidence            2222 222222 2333445555666 56788998744442 3456667788889999999999853  3433    4555


Q ss_pred             HHHHhhheecCCC
Q 013305          300 SVFIGISLLAPDE  312 (445)
Q Consensus       300 vi~~GV~lLs~~~  312 (445)
                      +++..++..+..+
T Consensus       315 ~vvsS~v~~a~~k  327 (346)
T KOG4510|consen  315 MVVSSTVWVALKK  327 (346)
T ss_pred             eeehhHHHHHHHH
Confidence            4444444444433

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=96.84  E-value=0.0085  Score=51.79  Aligned_cols=93  Identities=19%  Similarity=0.161  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCCccccccccccchhHH-HHHHHHHHHHHHHHHHhhhhhHHHhhhch
Q 013305           11 NLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRV-GILVFLLGNCLNFISFGYAAQSLLAALGS   89 (445)
Q Consensus        11 al~ss~l~a~G~~lqK~a~~~~~~~~~~~~~g~~g~~~~~~ll~~p~W~~-G~~l~~~g~il~~~Al~~ap~slV~PLga   89 (445)
                      -+++.++-..|....|+++-               .       +|+.|.+ -++.+++++.+-..|+...|+.+..++=+
T Consensus         7 L~lAi~~EV~~~~~lK~s~g---------------f-------~~~~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~   64 (106)
T COG2076           7 LLLAILLEVVGTTLLKYSDG---------------F-------TRLWPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWT   64 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHhc---------------c-------cccchHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHH
Confidence            34455666777777888742               1       1223444 44555677777788999999999988754


Q ss_pred             -hhHHHHHHHHHHHhccccccchhhhHHHhhhceeeE
Q 013305           90 -VQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFL  125 (445)
Q Consensus        90 -l~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~li  125 (445)
                       ++.+...+.+.+++||+++..+++|..++++|++.+
T Consensus        65 GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~L  101 (106)
T COG2076          65 GIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGL  101 (106)
T ss_pred             HHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHh
Confidence             899999999999999999999999999999998754

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=96.71  E-value=0.006  Score=60.83  Aligned_cols=121  Identities=12%  Similarity=0.102  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhccccC--CCCCC---------CCCccccccccccchh----HHHHHHHHHHH
Q 013305            5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHST--LDSDG---------TNGKHSLKPIVHYHSW----RVGILVFLLGN   69 (445)
Q Consensus         5 ~IGi~Lal~ss~l~a~G~~lqK~a~~~~~~~~~--~~~~g---------~~g~~~~~~ll~~p~W----~~G~~l~~~g~   69 (445)
                      ..|..++++++++.+++...+||...+......  .---+         ..+. ..........|    +.|+...+++.
T Consensus       149 ~~G~l~~l~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~l~i~~s~~~~  227 (292)
T PRK11272        149 PWGAILILIASASWAFGSVWSSRLPLPVGMMAGAAEMLAAGVVLLIASLLSGE-RLTALPTLSGFLALGYLAVFGSIIAI  227 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHcCC-cccccCCHHHHHHHHHHHHHHHHHHH
Confidence            469999999999999999999986432110000  00000         0000 00000001123    23455556778


Q ss_pred             HHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEE
Q 013305           70 CLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV  126 (445)
Q Consensus        70 il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv  126 (445)
                      .++..++...+.+.+..+..+.-+++.+++.+++||+++..+++|+++++.|+.++.
T Consensus       228 ~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~  284 (292)
T PRK11272        228 SAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVT  284 (292)
T ss_pred             HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence            888999999999999999999999999999999999999999999999999987653

>PRK11689 aromatic amino acid exporter; Provisional

Probab=96.71  E-value=0.0063  Score=60.80  Aligned_cols=118  Identities=8%  Similarity=0.023  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCC---------CCCccccccccccchh----HHHHHHHHHHHHH
Q 013305            5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDG---------TNGKHSLKPIVHYHSW----RVGILVFLLGNCL   71 (445)
Q Consensus         5 ~IGi~Lal~ss~l~a~G~~lqK~a~~~~~~~~~~~~~g---------~~g~~~~~~ll~~p~W----~~G~~l~~~g~il   71 (445)
                      ..|.+++++++++.+++.++.||-..+.......---+         ..+. ...+ .....|    +.| +..++++.+
T Consensus       155 ~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~-~~~~~~~~l~~~~-~~t~~~~~l  231 (295)
T PRK11689        155 PLSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFFILTALALWIKYFLSPQ-PAMV-FSLPAIIKLLLAA-AAMGFGYAA  231 (295)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhcC-cccc-CCHHHHHHHHHHH-HHHHHHHHH
Confidence            45999999999999999999998643211000000000         0000 0000 000112    223 234567888


Q ss_pred             HHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeE
Q 013305           72 NFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFL  125 (445)
Q Consensus        72 ~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~li  125 (445)
                      +..++...|.+.+.++..+.-+++++++.+++||+++..+++|.++|+.|+.+.
T Consensus       232 ~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~  285 (295)
T PRK11689        232 WNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLC  285 (295)
T ss_pred             HHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHH
Confidence            899999999999999999999999999999999999999999999999997755

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=96.71  E-value=0.018  Score=49.87  Aligned_cols=80  Identities=16%  Similarity=0.060  Sum_probs=59.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHHHh
Q 013305          225 LHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIG  304 (445)
Q Consensus       225 f~~w~tY~llv~~v~~~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~G  304 (445)
                      +++|.......+.+++...-..++..+++.-|....+|+.+ .-.+.+.+.|..+|+|..+  ..    -.+|+.++++|
T Consensus        31 ~~~~~~l~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~-l~~v~~~~~~~l~f~E~ls--~~----~~~Gi~lii~G  103 (111)
T PRK15051         31 KRRKHIVLWLGLALACLGLAMVLWLLVLQNVPVGIAYPMLS-LNFVWVTLAAVKLWHEPVS--PR----HWCGVAFIIGG  103 (111)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHH-HHHHHHHHHHHHHhCCCCC--HH----HHHHHHHHHHH
Confidence            45554444444444444556677899999999999999999 6777788999999999753  43    34677888899


Q ss_pred             hheecCC
Q 013305          305 ISLLAPD  311 (445)
Q Consensus       305 V~lLs~~  311 (445)
                      +++++++
T Consensus       104 v~~i~~~  110 (111)
T PRK15051        104 IVILGST  110 (111)
T ss_pred             HHHHhcc
Confidence            9888764

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=96.48  E-value=0.0021  Score=63.69  Aligned_cols=119  Identities=13%  Similarity=0.058  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCC---C--CCCc--cc------cccc-ccc-chh---HHHHHHHHH
Q 013305            6 IGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSD---G--TNGK--HS------LKPI-VHY-HSW---RVGILVFLL   67 (445)
Q Consensus         6 IGi~Lal~ss~l~a~G~~lqK~a~~~~~~~~~~~~~---g--~~g~--~~------~~~l-l~~-p~W---~~G~~l~~~   67 (445)
                      -|+.++++++++.+.+..+.|+.+.+..........   +  ..+.  ..      ..+. ... ..|   +.+.+...+
T Consensus       144 ~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l  223 (281)
T TIGR03340       144 KAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMIGG  223 (281)
T ss_pred             hHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHH
Confidence            366788899999999988888764321110000000   0  0000  00      0000 001 111   334444567


Q ss_pred             HHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceee
Q 013305           68 GNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIF  124 (445)
Q Consensus        68 g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~l  124 (445)
                      ++.+++.++...|.+.+.++.-++-+++.+++.+++||+++..+++|.+++++|+.+
T Consensus       224 ~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       224 AYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            888889999999999999999999999999999999999999999999999999865

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=96.27  E-value=0.16  Score=52.30  Aligned_cols=69  Identities=13%  Similarity=0.266  Sum_probs=62.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEE
Q 013305           58 WRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV  126 (445)
Q Consensus        58 W~~G~~l~~~g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv  126 (445)
                      |-+=-++|.+-+-+.+++++..|.+.-+...-+-++.+.++...+|++|+++++|...++..+|+.++-
T Consensus        95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ  163 (345)
T KOG2234|consen   95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ  163 (345)
T ss_pred             HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence            445556888877799999999999999999999999999999999999999999999999999988765

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=96.24  E-value=0.022  Score=56.97  Aligned_cols=121  Identities=12%  Similarity=0.128  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCC-CCC---------------CCCcccc-ccc-cccch-h----HHH
Q 013305            5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLD-SDG---------------TNGKHSL-KPI-VHYHS-W----RVG   61 (445)
Q Consensus         5 ~IGi~Lal~ss~l~a~G~~lqK~a~~~~~~~~~~~-~~g---------------~~g~~~~-~~l-l~~p~-W----~~G   61 (445)
                      ..|+.++++++++.+....++|+-..+.+...... ...               .++.... .++ -.++. |    +.|
T Consensus       142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  221 (299)
T PRK11453        142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA  221 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence            36999999999999999999998643211100000 000               0000000 000 00111 2    234


Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeE
Q 013305           62 ILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFL  125 (445)
Q Consensus        62 ~~l~~~g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~li  125 (445)
                      ++..+++..+++.++...+...+.++..+.=+++.+++.+++||+++..+++|.+++++|+.+.
T Consensus       222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~  285 (299)
T PRK11453        222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYIN  285 (299)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence            4445667777778888888888999999999999999999999999999999999999998754

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=96.08  E-value=0.091  Score=46.89  Aligned_cols=70  Identities=14%  Similarity=0.232  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHH-hhhcccccCChHHHHHHHHHHHHHHHhhheecCCCC
Q 013305          238 FSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGF-VYFQEYQVFDALRATMFILGTASVFIGISLLAPDES  313 (445)
Q Consensus       238 v~~~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~-i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lLs~~~~  313 (445)
                      +++...-..+++.+|++.|.+..+|+....+....+..-. ++|+|...  ..    -.+|.+++++||+++++++.
T Consensus        55 l~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls--~~----~~iGi~lIi~GV~lv~~~~~  125 (129)
T PRK02971         55 LAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFS--LK----KTLGVACIMLGVWLINLPTT  125 (129)
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCC--HH----HHHHHHHHHHHHHHhccCCC
Confidence            3344455556799999999999999998887555544443 58999753  33    45788999999999987654

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=95.91  E-value=0.36  Score=48.73  Aligned_cols=121  Identities=17%  Similarity=0.135  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhh----hhhccccCC-CC-------CCCCCccccccccccchhHHHHHHHHHHHHHHHH
Q 013305            7 GAFINLVGSIAINFGTNLLKLGH----IEREKHSTL-DS-------DGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFI   74 (445)
Q Consensus         7 Gi~Lal~ss~l~a~G~~lqK~a~----~~~~~~~~~-~~-------~g~~g~~~~~~ll~~p~W~~G~~l~~~g~il~~~   74 (445)
                      |+++++.+.++-++--...|.-.    .+--.|..- +-       .-.+..+..++..++|.=+..+.+..+=-..|..
T Consensus         8 Gil~~l~Ay~lwG~lp~y~kll~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li~~nW~   87 (293)
T COG2962           8 GILLALLAYLLWGLLPLYFKLLEPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLIGLNWW   87 (293)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence            77888888887766655555321    110000000 00       0000123344567788777777766666666766


Q ss_pred             HHhhhhhH---HHhhhchh-hHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEe
Q 013305           75 SFGYAAQS---LLAALGSV-QFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS  127 (445)
Q Consensus        75 Al~~ap~s---lV~PLgal-~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~  127 (445)
                      -|-.+|-.   +=+.+|=. .=++|++++..++|||+++.+|+++.+..+|+.....
T Consensus        88 lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~  144 (293)
T COG2962          88 LFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTW  144 (293)
T ss_pred             HhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence            67777654   33444432 2257999999999999999999999999999875433

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=95.58  E-value=0.022  Score=54.97  Aligned_cols=122  Identities=16%  Similarity=0.137  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCC-CCC-CCCc--------cccccccccch---hHHHHHHHHHHHHH
Q 013305            5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLD-SDG-TNGK--------HSLKPIVHYHS---WRVGILVFLLGNCL   71 (445)
Q Consensus         5 ~IGi~Lal~ss~l~a~G~~lqK~a~~~~~~~~~~~-~~g-~~g~--------~~~~~ll~~p~---W~~G~~l~~~g~il   71 (445)
                      ..|+.+++.++++.++...++|+-. +.......- -.. ....        ....+......   -+.|+...+++..+
T Consensus       153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  231 (292)
T COG0697         153 LLGLLLALAAALLWALYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLL  231 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999998654 110000000 000 0000        00000000001   13344444457888


Q ss_pred             HHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEe
Q 013305           72 NFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS  127 (445)
Q Consensus        72 ~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~  127 (445)
                      ++.++...+...++++..+..+++.+++.++++|+++..+++|+++++.|+.+...
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~  287 (292)
T COG0697         232 WYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASL  287 (292)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhc
Confidence            88999999999999999999999999999999999999999999999999876543

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=95.57  E-value=0.15  Score=44.30  Aligned_cols=80  Identities=8%  Similarity=0.020  Sum_probs=60.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHHH
Q 013305          224 QLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFI  303 (445)
Q Consensus       224 qf~~w~tY~llv~~v~~~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~  303 (445)
                      .|+++.+....+++   ...-.+++.++++.-|....+|+-...=+....+.|.++|+|..+  ..    -.+|+.+++.
T Consensus        26 gf~~~~~~i~~~~~---~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~--~~----~~~gi~lIi~   96 (110)
T PRK09541         26 GFTRLWPSVGTIIC---YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLD--LP----AIIGMMLICA   96 (110)
T ss_pred             CCCchhHHHHHHHH---HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCC--HH----HHHHHHHHHH
Confidence            36777766544333   344466789999999999999988888888889999999999754  33    3467788999


Q ss_pred             hhheecCCC
Q 013305          304 GISLLAPDE  312 (445)
Q Consensus       304 GV~lLs~~~  312 (445)
                      ||+++....
T Consensus        97 GVi~l~l~~  105 (110)
T PRK09541         97 GVLVINLLS  105 (110)
T ss_pred             HHHHHhcCC
Confidence            999986543

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=95.37  E-value=0.018  Score=57.60  Aligned_cols=62  Identities=11%  Similarity=-0.022  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEe
Q 013305           66 LLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS  127 (445)
Q Consensus        66 ~~g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~  127 (445)
                      .++..+++.++...|.+.++++.-+.-+++.+++.+++||+++...++|++++++|+.++..
T Consensus       224 ~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~  285 (296)
T PRK15430        224 TVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVM  285 (296)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            36788889999999999999999999999999999999999999999999999888776653

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=95.01  E-value=0.36  Score=42.65  Aligned_cols=66  Identities=14%  Similarity=0.121  Sum_probs=52.8

Q ss_pred             HHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHHHhhheecCCCC
Q 013305          242 GFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDES  313 (445)
Q Consensus       242 l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lLs~~~~  313 (445)
                      ..-.+++.++++.-|..+.+|+....=++...+.|.++|+|..+  ..    -.+|+.+++.||+++....+
T Consensus        41 ~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s--~~----~~~gi~lIi~GVi~l~l~~~  106 (120)
T PRK10452         41 SLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLS--LM----KIAGLTTLVAGIVLIKSGTR  106 (120)
T ss_pred             HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCC--HH----HHHHHHHHHHHHHHhhcCCC
Confidence            34466789999999999999998888888889999999999754  33    34688889999999865543

>PRK11431 multidrug efflux system protein; Provisional

Probab=94.52  E-value=0.33  Score=41.92  Aligned_cols=79  Identities=16%  Similarity=0.032  Sum_probs=59.4

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHH
Q 013305          223 YQLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVF  302 (445)
Q Consensus       223 ~qf~~w~tY~llv~~v~~~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~  302 (445)
                      +.|++|.++++.+++.   ..-.++|.++++.-|....+++....=+....+.|.++|+|..+  +.+    .+|+.+++
T Consensus        24 ~gf~~~~~~~~~i~~~---~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~--~~~----~~gi~lIi   94 (105)
T PRK11431         24 HGFSRLTPSIITVTAM---IVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESAS--PAR----LLSLALIV   94 (105)
T ss_pred             hCCccHHHHHHHHHHH---HHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCC--HHH----HHHHHHHH
Confidence            3577887776554443   34466789999999988888888877788888899999999754  333    36778889


Q ss_pred             HhhheecC
Q 013305          303 IGISLLAP  310 (445)
Q Consensus       303 ~GV~lLs~  310 (445)
                      .||+.|..
T Consensus        95 ~GVv~l~l  102 (105)
T PRK11431         95 AGIIGLKL  102 (105)
T ss_pred             HHHHhhhc
Confidence            99998753

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=94.50  E-value=0.88  Score=45.86  Aligned_cols=78  Identities=14%  Similarity=0.333  Sum_probs=60.5

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHhhh-hhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeecCCC
Q 013305           55 YHSWRVGILVFLLGNCLNFISFGYA-AQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQ  132 (445)
Q Consensus        55 ~p~W~~G~~l~~~g~il~~~Al~~a-p~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g~~~  132 (445)
                      .+.|..=..++-..+++|=.|+.|. |.-+=--+=+-+++.|+.++..++|++-+.+++..++++.+|+++.-.+..++
T Consensus        64 lk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d  142 (330)
T KOG1583|consen   64 LKDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKD  142 (330)
T ss_pred             hhhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcc
Confidence            3457777777777888888888876 22222223455899999999999999999999999999999988777766554

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=94.33  E-value=0.88  Score=43.84  Aligned_cols=61  Identities=11%  Similarity=0.085  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEe
Q 013305           67 LGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS  127 (445)
Q Consensus        67 ~g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~  127 (445)
                      ..+.+-..||.....+.+..+.+..--|..+++...||+++...+++.+++.+.|++++.+
T Consensus        65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay  125 (290)
T KOG4314|consen   65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAY  125 (290)
T ss_pred             cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEe
Confidence            3455667788899999999999999999999999999999999999999999999887765

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=94.30  E-value=0.39  Score=41.77  Aligned_cols=78  Identities=9%  Similarity=0.068  Sum_probs=58.6

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHH
Q 013305          223 YQLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVF  302 (445)
Q Consensus       223 ~qf~~w~tY~llv~~v~~~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~  302 (445)
                      +.|++|.+.+..++..   ..=.++|.++++.-|....+++-...-+....+.|.++|+|..+  ..    -.+|+.+++
T Consensus        30 ~gf~~~~~~~~~~~~~---~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~--~~----~~~gi~lIi  100 (109)
T PRK10650         30 DGFRRKIYGILSLAAV---LAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLN--RK----GWIGLVLLL  100 (109)
T ss_pred             cCCcchHHHHHHHHHH---HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCC--HH----HHHHHHHHH
Confidence            3477777765554433   33356789999999999888888888888899999999999754  33    336777888


Q ss_pred             Hhhheec
Q 013305          303 IGISLLA  309 (445)
Q Consensus       303 ~GV~lLs  309 (445)
                      .||+.|.
T Consensus       101 ~GVi~lk  107 (109)
T PRK10650        101 AGMVMIK  107 (109)
T ss_pred             HHHHHhc
Confidence            8888763

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=94.14  E-value=0.19  Score=52.30  Aligned_cols=61  Identities=13%  Similarity=0.125  Sum_probs=54.5

Q ss_pred             HHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeecCCCCC
Q 013305           74 ISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSP  134 (445)
Q Consensus        74 ~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g~~~~~  134 (445)
                      .||++-.++-..=+.+.+=+|.++++.++.+||++..+.+++++.+.|++++.....++..
T Consensus       178 aALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~  238 (416)
T KOG2765|consen  178 AALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNS  238 (416)
T ss_pred             HHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccc
Confidence            6899999999999999999999999999999999999999999999998877776555433

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=94.01  E-value=0.073  Score=53.37  Aligned_cols=120  Identities=14%  Similarity=0.145  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCC--CCC----ccc--cccccccchhH----HHHHHHHHHHHHH
Q 013305            5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDG--TNG----KHS--LKPIVHYHSWR----VGILVFLLGNCLN   72 (445)
Q Consensus         5 ~IGi~Lal~ss~l~a~G~~lqK~a~~~~~~~~~~~~~g--~~g----~~~--~~~ll~~p~W~----~G~~l~~~g~il~   72 (445)
                      ..|+++++++++++++-...-|+.+........+.--|  ..+    ..+  .+++ ..+.+|    .|+. ..+++.+-
T Consensus       151 ~~Gi~~~l~sg~~y~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Gi~-~~ia~~~y  228 (290)
T TIGR00776       151 KKGILLLLMSTIGYLVYVVVAKAFGVDGLSVLLPQAIGMVIGGIIFNLGHILAKPL-KKYAILLNILPGLM-WGIGNFFY  228 (290)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHcCCCcceehhHHHHHHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHH-HHHHHHHH
Confidence            46999999999999888888776531100000000000  000    000  0111 112333    5555 46777787


Q ss_pred             HHHHh-hhhhHHHhhhchhhHHHHHHHHHHHhccccccchh----hhHHHhhhceeeEE
Q 013305           73 FISFG-YAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVL----VATAFIVLGNIFLV  126 (445)
Q Consensus        73 ~~Al~-~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~----~G~~lii~G~~liv  126 (445)
                      +.+.. ..+.+...++..+..+.+.+.+.+++||+.+++++    +|+++++.|+.++.
T Consensus       229 ~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       229 LFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG  287 (290)
T ss_pred             HHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence            88888 89999999999999999999999999999999999    99999999987654

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=93.52  E-value=0.27  Score=43.57  Aligned_cols=57  Identities=18%  Similarity=0.290  Sum_probs=47.2

Q ss_pred             HHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceee
Q 013305           68 GNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIF  124 (445)
Q Consensus        68 g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~l  124 (445)
                      -++..+..+.........=++.+--+...+++.++++|+++..++.|.+++++|..+
T Consensus        94 ~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   94 YNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence            344445666666666777788888899999999999999999999999999999764

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=93.43  E-value=0.67  Score=39.66  Aligned_cols=64  Identities=17%  Similarity=0.163  Sum_probs=46.4

Q ss_pred             HHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHHHhhheecCCCCC
Q 013305          243 FWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDESK  314 (445)
Q Consensus       243 ~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lLs~~~~~  314 (445)
                      ........|+++.+ ..+.| .+...++++.+.|.++|+|..  +..    ..+|.+++++||.++.-++..
T Consensus        47 ~~~~~~~~a~~~~~-~~v~~-i~~~~pi~~~ll~~~~~~er~--~~~----~~~a~~l~~~Gv~li~~~~~~  110 (113)
T PF13536_consen   47 VAYLLFFYALSYAP-ALVAA-IFSLSPIFTALLSWLFFKERL--SPR----RWLAILLILIGVILIAWSDLT  110 (113)
T ss_pred             HHHHHHHHHHHhCc-HHHHH-HHHHHHHHHHHHHHHHhcCCC--CHH----HHHHHHHHHHHHHHHhhhhcc
Confidence            33444578888888 45554 455799999999999999854  444    345777888999998876544

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=93.20  E-value=0.67  Score=46.79  Aligned_cols=71  Identities=18%  Similarity=0.286  Sum_probs=64.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEee
Q 013305           58 WRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSF  128 (445)
Q Consensus        58 W~~G~~l~~~g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~  128 (445)
                      ...=.++.+.|..+..+.|-+..++--|-+-..-++|.-+++..+||++++.++|+|...+.+|.+.+...
T Consensus        89 fl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~  159 (372)
T KOG3912|consen   89 FLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL  159 (372)
T ss_pred             ecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence            34456788999999999999999999999999999999999999999999999999999999998877654

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=93.04  E-value=0.49  Score=48.87  Aligned_cols=130  Identities=14%  Similarity=0.156  Sum_probs=79.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCC---------ccccccccccchhHHHHH-HHHHHHHHH
Q 013305            3 EWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNG---------KHSLKPIVHYHSWRVGIL-VFLLGNCLN   72 (445)
Q Consensus         3 ~~~IGi~Lal~ss~l~a~G~~lqK~a~~~~~~~~~~~~~g~~g---------~~~~~~ll~~p~W~~G~~-l~~~g~il~   72 (445)
                      ..++|-+++++|+++.|+..++|++-..+.++.+.-...|.-|         --+... +++-.|=.... +++...++.
T Consensus       165 ~~i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~-i~~~~w~~~~~~~~v~~~~~l  243 (334)
T PF06027_consen  165 NPILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERSG-IESIHWTSQVIGLLVGYALCL  243 (334)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehhh-hhccCCChhhHHHHHHHHHHH
Confidence            4578999999999999999999998765433221100000000         000000 11111222222 233444455


Q ss_pred             HHHHhhhhhHHH------hhhch-hhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeecCCCC
Q 013305           73 FISFGYAAQSLL------AALGS-VQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQS  133 (445)
Q Consensus        73 ~~Al~~ap~slV------~PLga-l~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g~~~~  133 (445)
                      +.-|...|..+.      .-++- ++-++++++..++.|++++..-++|.++|++|.++.....++++
T Consensus       244 f~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~  311 (334)
T PF06027_consen  244 FLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEE  311 (334)
T ss_pred             HHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCccc
Confidence            777777777542      12222 24688999999999999999999999999999887766554443

Some of the sequences in this family are annotated as putative membrane proteins.

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=92.15  E-value=1.1  Score=38.88  Aligned_cols=77  Identities=14%  Similarity=0.141  Sum_probs=56.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHHHh
Q 013305          225 LHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIG  304 (445)
Q Consensus       225 f~~w~tY~llv~~v~~~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~G  304 (445)
                      |+++.++++.+++.   ..-.++|.++++.-|....+++-.-.=+....+.|.++|+|..+  +.    =.+|+.++++|
T Consensus        27 f~~~~~~il~~v~~---~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~--~~----~~~gl~LiiaG   97 (106)
T COG2076          27 FTRLWPSILTIVGY---GLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLS--LI----KLLGLALILAG   97 (106)
T ss_pred             ccccchHHHHHHHH---HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCC--HH----HHHHHHHHHHH
Confidence            55666655444433   33356789999999988888888888888888899999999754  33    34677788999


Q ss_pred             hheecC
Q 013305          305 ISLLAP  310 (445)
Q Consensus       305 V~lLs~  310 (445)
                      |+.|..
T Consensus        98 vi~Lk~  103 (106)
T COG2076          98 VIGLKL  103 (106)
T ss_pred             HHHhhh
Confidence            988754

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=91.92  E-value=1.4  Score=44.18  Aligned_cols=76  Identities=13%  Similarity=0.075  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHHHhhheecCCCCCCC
Q 013305          238 FSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDESKGG  316 (445)
Q Consensus       238 v~~~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lLs~~~~~~~  316 (445)
                      ++-++-|.. .=++.++--.+...|+-..+--+.+.+.|+++|+||...  .+.+.-.++++++++|+++-+.++++++
T Consensus        53 ~~W~iGq~~-qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~--~~~~~G~~Al~liiiGv~lts~~~~~~~  128 (269)
T PF06800_consen   53 AFWAIGQIG-QFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTT--TQKIIGFLALVLIIIGVILTSYQDKKSD  128 (269)
T ss_pred             HHHHHHHHH-HHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCc--chHHHHHHHHHHHHHHHHHhcccccccc
Confidence            333444432 245666777888999999999999999999999999864  4566666788999999999887765544

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=91.90  E-value=0.79  Score=40.19  Aligned_cols=54  Identities=28%  Similarity=0.242  Sum_probs=42.6

Q ss_pred             hhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHHHhhhee
Q 013305          249 NEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLL  308 (445)
Q Consensus       249 N~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lL  308 (445)
                      .-.|...|-++.+|+.+..--+++++.|..+.+|...-   +   -.+|+.++++||.+.
T Consensus        59 ~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~---~---~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   59 FLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISR---R---TWLGMALILAGVALC  112 (113)
T ss_pred             HHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccch---h---HHHHHHHHHcCeeee
Confidence            44677789999999999998899999998877776432   2   247888899998763

Many members are annotated as potential transmembrane proteins.

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=91.18  E-value=1.5  Score=36.61  Aligned_cols=58  Identities=10%  Similarity=0.047  Sum_probs=30.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhccccc
Q 013305          225 LHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQV  285 (445)
Q Consensus       225 f~~w~tY~llv~~v~~~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~  285 (445)
                      ++++.+....++   +-..-.+++.+++++-|..+.+|+....=+....+.|..+|+|..+
T Consensus        26 ~~~~~~~~~~~~---~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s   83 (93)
T PF00893_consen   26 FTQLIPTILAVV---GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLS   83 (93)
T ss_dssp             --------HHHH---HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH-----
T ss_pred             hcchhhHHHHHH---HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            455555443332   3344567889999999999999999988889999999999999754

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=90.84  E-value=0.31  Score=40.80  Aligned_cols=60  Identities=17%  Similarity=0.226  Sum_probs=45.9

Q ss_pred             HHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHHHhhhee
Q 013305          242 GFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLL  308 (445)
Q Consensus       242 l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lL  308 (445)
                      ..-..+.++|+++.++..+.++.+ ..++.+.+.+.++++|..+  ..    ..+|+.+++.|++++
T Consensus        65 ~~~~~~~~~a~~~~~~~~~~~~~~-~~pv~~~i~~~~~~~e~~~--~~----~~~g~~l~~~g~~l~  124 (126)
T PF00892_consen   65 ALAYLLYFYALKYISASIVSILQY-LSPVFAAILGWLFLGERPS--WR----QIIGIILIIIGVVLI  124 (126)
T ss_pred             ehHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHHHHcCCCCC--HH----HHHHHHHHHHHHHHH
Confidence            333455689999999999998877 7999999999999999753  33    445666777777664

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>TIGR00803 nst UDP-galactose transporter

Probab=89.83  E-value=1.6  Score=41.53  Aligned_cols=122  Identities=11%  Similarity=0.023  Sum_probs=78.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCC---------------CCCCCCcc-cccc-ccc-cchhHHHHHH
Q 013305            3 EWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLD---------------SDGTNGKH-SLKP-IVH-YHSWRVGILV   64 (445)
Q Consensus         3 ~~~IGi~Lal~ss~l~a~G~~lqK~a~~~~~~~~~~~---------------~~g~~g~~-~~~~-ll~-~p~W~~G~~l   64 (445)
                      ....|+...+.+.++-++..+.|++..++++......               .....+.. ...+ ... .+.+|.=+++
T Consensus        82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (222)
T TIGR00803        82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGLL  161 (222)
T ss_pred             cHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHHHH
Confidence            3456777777777777889999998855432110000               00000000 0000 011 1223333344


Q ss_pred             HHHHHHHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceee
Q 013305           65 FLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIF  124 (445)
Q Consensus        65 ~~~g~il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~l  124 (445)
                      ...+.++-...+.+++.....=...+..+++.+++.++++|+++...+.|+.++..|+.+
T Consensus       162 ~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       162 NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            456666666788888888999999999999999999999999999999999999988653

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=89.31  E-value=0.29  Score=48.87  Aligned_cols=56  Identities=14%  Similarity=0.228  Sum_probs=48.1

Q ss_pred             HHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeE
Q 013305           70 CLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFL  125 (445)
Q Consensus        70 il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~li  125 (445)
                      .+++.++...+.+...-.+.+.=++.++++.+++||+++..+++|.++++.|+.+.
T Consensus       236 ~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~  291 (302)
T TIGR00817       236 QVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLY  291 (302)
T ss_pred             HHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHH
Confidence            44456777888888888888888999999999999999999999999999998754

specificities overlap.

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=89.11  E-value=4.8  Score=40.38  Aligned_cols=57  Identities=11%  Similarity=0.255  Sum_probs=49.1

Q ss_pred             HHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeec
Q 013305           73 FISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFG  129 (445)
Q Consensus        73 ~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g  129 (445)
                      .-|+.+....-++-|-.-+++..++++.++||.|-+..++.|++.|++|+++++..-
T Consensus        96 V~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sD  152 (336)
T KOG2766|consen   96 VKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSD  152 (336)
T ss_pred             eeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEee
Confidence            457777777788888888899999999999999999999999999999998777543

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=88.95  E-value=27  Score=35.07  Aligned_cols=84  Identities=12%  Similarity=0.021  Sum_probs=49.1

Q ss_pred             cchhHHHHHHHHH-HHHHHHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHH
Q 013305          224 QLHSWFTYSMLLL-FFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVF  302 (445)
Q Consensus       224 qf~~w~tY~llv~-~v~~~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~  302 (445)
                      .+.+|....+-+. .+.+...--..-+-+|++-++. ..-+..+..+.++-+.|.++++|..  ++.+++.+.+ ++...
T Consensus       202 ~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~-~F~~LlSLePa~aAl~G~i~L~e~l--s~~qwlaI~~-ViaAs  277 (292)
T COG5006         202 ALFSPSLLPLALGVAVLSSALPYSLEMIALRRLPAR-TFGTLLSLEPALAALSGLIFLGETL--TLIQWLAIAA-VIAAS  277 (292)
T ss_pred             hhcChHHHHHHHHHHHHhcccchHHHHHHHhhCChh-HHHHHHHhhHHHHHHHHHHHhcCCC--CHHHHHHHHH-HHHHH
Confidence            3455554433222 2333333333346677776554 5667788999999999999999975  4566654332 23345


Q ss_pred             HhhheecCC
Q 013305          303 IGISLLAPD  311 (445)
Q Consensus       303 ~GV~lLs~~  311 (445)
                      .|+.+=.++
T Consensus       278 aG~~lt~~~  286 (292)
T COG5006         278 AGSTLTARK  286 (292)
T ss_pred             hccccccCC
Confidence            555553333

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=87.99  E-value=17  Score=37.81  Aligned_cols=235  Identities=14%  Similarity=0.081  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHhhhhhHHHhhhch-hhHHHHHHHHHHHhcc-------ccccchhhhHHHhhhceeeEEeecCCCCCCCCH
Q 013305           67 LGNCLNFISFGYAAQSLLAALGS-VQFVSNIAFSYFVFNK-------MVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTP  138 (445)
Q Consensus        67 ~g~il~~~Al~~ap~slV~PLga-l~lv~~~l~a~~~l~E-------~~~~~~~~G~~lii~G~~liv~~g~~~~~~~t~  138 (445)
                      +|.+.--.+..+.-.|+-+...- ++.++..++-..+.++       +-....++|++++++|++++...|...+.+.+.
T Consensus        85 IGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~~~~~  164 (344)
T PF06379_consen   85 IGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEKELGE  164 (344)
T ss_pred             cchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhhhhcc
Confidence            34444445555666666555433 4445555554555432       223455789999999999888877654444332


Q ss_pred             HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhcccc---ccccCCCchhhhhhhhHHHHHHHhhhhhHHHHHHHHHHHHH
Q 013305          139 EQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENL---LAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLL  215 (445)
Q Consensus       139 ~eL~~~~~~~~fl~y~~i~iviv~l~~~~~r~~~~~---~~~~g~~~~~~~~l~~l~y~~~sGllgg~svl~aK~~~~ll  215 (445)
                      + -.|.-...+.++-+..-+.-.|+.+ ....++..   ....|.++ -+..+...+.    =+.||+..=+.=++-...
T Consensus       165 ~-~~efn~~kGl~iAv~sGv~Sa~fn~-g~~ag~pi~~~a~a~G~~~-l~~~l~~~vv----v~~GGf~tN~~yc~~~l~  237 (344)
T PF06379_consen  165 E-AKEFNFKKGLIIAVLSGVMSACFNF-GLDAGKPIHEAAVAAGVNP-LYANLPVYVV----VLWGGFITNLIYCLILLA  237 (344)
T ss_pred             c-hhhhhhhhhHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHcCCCc-HHHhCchhhh----hhhhHHHHHHHHHHHHHh
Confidence            2 1221112222211111111112221 11111111   01112211 1111111111    233555554554544433


Q ss_pred             H-HHhc--cCccc-hhH--HHHHHHHHHHHHHHHHHHHHhhhhcc-cc--cceehhhHHHHHHHHHHHHHHhhhcccccC
Q 013305          216 R-LAMS--NGYQL-HSW--FTYSMLLLFFSTAGFWMARLNEGLSL-FD--AILIVPMFQIAWTSFSICTGFVYFQEYQVF  286 (445)
Q Consensus       216 ~-~ti~--g~~qf-~~w--~tY~llv~~v~~~l~Ql~~LN~aL~~-~d--a~~VvPv~~v~~t~~si~~G~i~f~E~~~~  286 (445)
                      + .+.+  +|... +++  .-|++.++.-+.=-.|..|.-.|=.. .+  ....-++...+..+++.+.| +.++||.+.
T Consensus       238 ~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwG-l~lkEWKg~  316 (344)
T PF06379_consen  238 KNKNWSWKGDYSVAKPPLLKNYLFCALAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWG-LILKEWKGA  316 (344)
T ss_pred             hcCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHH-HHHHHhccC
Confidence            2 1222  22111 121  22444444444455777665444332 22  24467788888888888877 568999999


Q ss_pred             ChHHHHHHHHHHHHHHHhhheec
Q 013305          287 DALRATMFILGTASVFIGISLLA  309 (445)
Q Consensus       287 ~~~~~~~~~~G~~vi~~GV~lLs  309 (445)
                      +......+.+|+++++..+.++.
T Consensus       317 s~kt~~vl~~G~~vlI~s~~ivG  339 (344)
T PF06379_consen  317 SKKTIRVLVLGIAVLILSVVIVG  339 (344)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHh
Confidence            88777888999988888877654

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=86.72  E-value=0.48  Score=46.95  Aligned_cols=223  Identities=17%  Similarity=0.189  Sum_probs=119.8

Q ss_pred             ccccchhHHHHHHH---HHHHHHHHHHHhhhhhHHHhhhch-hhHHHHHHHHHHHhccccccch----hhhHHHhhhcee
Q 013305           52 IVHYHSWRVGILVF---LLGNCLNFISFGYAAQSLLAALGS-VQFVSNIAFSYFVFNKMVTVKV----LVATAFIVLGNI  123 (445)
Q Consensus        52 ll~~p~W~~G~~l~---~~g~il~~~Al~~ap~slV~PLga-l~lv~~~l~a~~~l~E~~~~~~----~~G~~lii~G~~  123 (445)
                      .+.-..|..|++--   .+|+..||-|+.+.-.|...|+.. .+++-+.+++.+.+||=-+..+    .++.++++.|+.
T Consensus        53 ~~T~~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~  132 (288)
T COG4975          53 ELTLTIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIY  132 (288)
T ss_pred             ccchhhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhhe
Confidence            33344577777644   469999999999999999999987 7899999999999999766555    335678888877


Q ss_pred             eEEeecCCCCCCCCHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCchhhhhhhhHHHHHHHhhhhhH
Q 013305          124 FLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSF  203 (445)
Q Consensus       124 liv~~g~~~~~~~t~~eL~~~~~~~~fl~y~~i~iviv~l~~~~~r~~~~~~~~~g~~~~~~~~l~~l~y~~~sGllgg~  203 (445)
                      +-..-.+.+.++.+++.+.          +..+.+.+.-+.+..|-.-.+.                +.       +.|.
T Consensus       133 lTs~~~~~nk~~~~~~n~k----------kgi~~L~iSt~GYv~yvvl~~~----------------f~-------v~g~  179 (288)
T COG4975         133 LTSKQDRNNKEEENPSNLK----------KGIVILLISTLGYVGYVVLFQL----------------FD-------VDGL  179 (288)
T ss_pred             EeeeeccccccccChHhhh----------hheeeeeeeccceeeeEeeecc----------------cc-------ccch
Confidence            6655433223333443332          2111111111111111100000                00       2333


Q ss_pred             HHHHHHHHHHHHHH---HhccCccchhHHHHHHHHHHHHHHHHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhh
Q 013305          204 SVLFAKSLSNLLRL---AMSNGYQLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYF  280 (445)
Q Consensus       204 svl~aK~~~~ll~~---ti~g~~qf~~w~tY~llv~~v~~~l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f  280 (445)
                      ++++-.+++-.+--   +..+.+...+-.+|.-++..+.-+.--+.++-.+=..+-++- ..+-|. -.+.+.++|+.++
T Consensus       180 saiLPqAiGMv~~ali~~~~~~~~~~~K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~-FSlSQl-gViisTiGGIl~L  257 (288)
T COG4975         180 SAILPQAIGMVIGALILGFFKMEKRFNKYTWLNIIPGLIWAIGNLFMLLAAQKVGVATS-FSLSQL-GVIISTIGGILFL  257 (288)
T ss_pred             hhhhHHHHHHHHHHHHHhhcccccchHHHHHHHHhhHHHHHhhHHHHHHhhhhhceeee-eeHhhh-eeeeeecceEEEE
Confidence            44444443322211   111222333444555444443333322222211111111110 001110 1125677899999


Q ss_pred             cccccCChHHHHHHHHHHHHHHHhhheecCC
Q 013305          281 QEYQVFDALRATMFILGTASVFIGISLLAPD  311 (445)
Q Consensus       281 ~E~~~~~~~~~~~~~~G~~vi~~GV~lLs~~  311 (445)
                      +|..  +...+.....|++++++|..+|.--
T Consensus       258 ~ekK--tkkEm~~v~iGiilivvgai~lg~~  286 (288)
T COG4975         258 GEKK--TKKEMVYVIIGIILIVVGAILLGIA  286 (288)
T ss_pred             eccC--chhhhhhhhhhHHHHHHHhhhhhee
Confidence            9986  4678888999999999998887654

>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.68  E-value=2.8  Score=35.95  Aligned_cols=105  Identities=16%  Similarity=0.268  Sum_probs=64.9

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCCccccccccccchhHHHHHHHHHHHHHH---HHHHh
Q 013305            1 MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLN---FISFG   77 (445)
Q Consensus         1 m~~~~IGi~Lal~ss~l~a~G~~lqK~a~~~~~~~~~~~~~g~~g~~~~~~ll~~p~W~~G~~l~~~g~il~---~~Al~   77 (445)
                      |+.++--++|-++|++++.++    =++|.+....+          -....   --.|=+.++=|.+..-.|   -..|+
T Consensus         5 ~~~~l~~vlLL~~SNvFMTFA----WYghLk~~~~p----------l~~~i---~~SWGIA~fEY~LqvPaNRiG~~v~s   67 (116)
T COG3169           5 MSVYLYPVLLLIGSNVFMTFA----WYGHLKFTNKP----------LVIVI---LASWGIAFFEYLLQVPANRIGHQVYS   67 (116)
T ss_pred             CchHHHHHHHHHhhHHHHHHH----HHHHHhccCCc----------hhHHH---HHHhhHHHHHHHHhCccchhhhhhcc
Confidence            678888899999999999887    57877632110          00000   113444444343322222   23344


Q ss_pred             hhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceee
Q 013305           78 YAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIF  124 (445)
Q Consensus        78 ~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~l  124 (445)
                      .+.+-..|-  .+++..-++++.++++|+++...+.|.+++..|+.+
T Consensus        68 ~~QLK~mQE--VItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~f  112 (116)
T COG3169          68 AAQLKTMQE--VITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYF  112 (116)
T ss_pred             HHHHHHHHH--HHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHH
Confidence            444444443  356777788999999999999999988888777654

>COG1742 Uncharacterized conserved protein [Function unknown]

Probab=85.09  E-value=5  Score=34.75  Aligned_cols=48  Identities=21%  Similarity=0.297  Sum_probs=39.4

Q ss_pred             HHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeecCC
Q 013305           83 LLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNH  131 (445)
Q Consensus        83 lV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g~~  131 (445)
                      +-+.-|.+=++.+++-..+.-|.++++.||.|.++|.+|+. ++.++|.
T Consensus        60 vYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~-vil~~pR  107 (109)
T COG1742          60 VYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVA-VILFGPR  107 (109)
T ss_pred             HHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhcee-eeEeCCC
Confidence            45667778788888888888899999999999999999955 5556654

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=83.86  E-value=0.6  Score=40.53  Aligned_cols=77  Identities=18%  Similarity=0.299  Sum_probs=60.8

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhch-hhHHHHHHHHHHHhccccc-cchhhhHHHhhhceeeEE
Q 013305           49 LKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALGS-VQFVSNIAFSYFVFNKMVT-VKVLVATAFIVLGNIFLV  126 (445)
Q Consensus        49 ~~~ll~~p~W~~G~~l~~~g~il~~~Al~~ap~slV~PLga-l~lv~~~l~a~~~l~E~~~-~~~~~G~~lii~G~~liv  126 (445)
                      .+.++.+-..|+=+++---|..+-+.-|+-+|.++..|+.. +++.|+.+++.. |+|+.. ++.+.|+.+++.|+.+.+
T Consensus        46 ~~tl~l~w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~-LGE~~~g~~a~lGt~liv~Gi~Lci  124 (125)
T KOG4831|consen   46 MKTLFLNWEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKA-LGEETQGGLALLGTSLIVFGIWLCI  124 (125)
T ss_pred             HHHHHHhHHHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHH-hccccccceeehhhhHHhhhhhhee
Confidence            34455555667788888788888889999999999999864 789999999966 577665 555779999999987654

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=82.14  E-value=3  Score=41.70  Aligned_cols=124  Identities=14%  Similarity=0.083  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCC-C---------CCCcccccccccc-chhHHHHHHHHH----HH
Q 013305            5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSD-G---------TNGKHSLKPIVHY-HSWRVGILVFLL----GN   69 (445)
Q Consensus         5 ~IGi~Lal~ss~l~a~G~~lqK~a~~~~~~~~~~~~~-g---------~~g~~~~~~ll~~-p~W~~G~~l~~~----g~   69 (445)
                      .+|+.+|+.+..|-+.=.++=||.....  ++...-. |         .-|...-.+.+.+ +.-..++.+-++    =+
T Consensus       147 p~Gv~~Al~AG~~Wa~YIv~G~r~g~~~--~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPY  224 (292)
T COG5006         147 PVGVALALGAGACWALYIVLGQRAGRAE--HGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPY  224 (292)
T ss_pred             HHHHHHHHHHhHHHHHHHHHcchhcccC--CCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccch
Confidence            5799999999998887777767665311  1100000 0         0000011111222 233444444444    45


Q ss_pred             HHHHHHHhhhhhHHHhhhchhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeecC
Q 013305           70 CLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGN  130 (445)
Q Consensus        70 il~~~Al~~ap~slV~PLgal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g~  130 (445)
                      .+..+|+...|...-.-|.++.=.+..+.+..+|||+++..+|+|+++++.++........
T Consensus       225 sLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~  285 (292)
T COG5006         225 SLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTAR  285 (292)
T ss_pred             HHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccC
Confidence            6778999999999999999999999999999999999999999999999998875554333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	445
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.76
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.64
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	97.24
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	96.66

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.76  E-value=2.5e-08  Score=84.91  Aligned_cols=99  Identities=15%  Similarity=0.149  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHhhhhhHHHhhh-
Q 013305            9 FINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAAL-   87 (445)
Q Consensus         9 ~Lal~ss~l~a~G~~lqK~a~~~~~~~~~~~~~g~~g~~~~~~ll~~p~W~~G~~l~~~g~il~~~Al~~ap~slV~PL-   87 (445)
                      ++.+++.++-+.|+.+.|++..               .  .    +.+.++.+.+.+++++.+...++...|++.+.|+ 
T Consensus         5 l~l~~a~~~e~~~~~~lK~s~~---------------~--~----~~~~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~   63 (110)
T 3b5d_A            5 IYLGGAILAEVIGTTLMKFSEG---------------F--T----RLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIW   63 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHhccC---------------c--c----hHHHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHH
Confidence            4566788899999999999731               1  0    1234678888899999999999999999999999 


Q ss_pred             chhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEee
Q 013305           88 GSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSF  128 (445)
Q Consensus        88 gal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~  128 (445)
                      .+++.++..+++.+++||+++..+++|+++++.|++++...
T Consensus        64 ~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~  104 (110)
T 3b5d_A           64 SGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (110)
T ss_pred             hhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            89999999999999999999999999999999999877553

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.64  E-value=2.1e-08  Score=88.91  Aligned_cols=100  Identities=15%  Similarity=0.153  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHhhhhhHHHhhh-
Q 013305            9 FINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAAL-   87 (445)
Q Consensus         9 ~Lal~ss~l~a~G~~lqK~a~~~~~~~~~~~~~g~~g~~~~~~ll~~p~W~~G~~l~~~g~il~~~Al~~ap~slV~PL-   87 (445)
                      ++.+++.++-+.|+.+.|++..               ..      +.+.++.|+++++++++++..++...|++.+.|+ 
T Consensus         5 l~Ll~ail~ev~~~~~lK~s~g---------------~~------~~~~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw   63 (137)
T 2i68_A            5 IYLGGAILAEVIGTTLMKFSEG---------------FT------RLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIW   63 (137)
T ss_dssp             HHHHHHHHHHHHHHHHC---------------------------------CHHHHHHHHHHHHHHHHHC-----CHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcc---------------cc------hHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHH
Confidence            3456788889999999999731               00      1234678999999999999999999999999999 


Q ss_pred             chhhHHHHHHHHHHHhccccccchhhhHHHhhhceeeEEeec
Q 013305           88 GSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFG  129 (445)
Q Consensus        88 gal~lv~~~l~a~~~l~E~~~~~~~~G~~lii~G~~liv~~g  129 (445)
                      .+++.++..+++.+++||+++..+++|++++++|++++....
T Consensus        64 ~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           64 SGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            899999999999999999999999999999999998776543

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=97.24  E-value=0.00049  Score=60.74  Aligned_cols=65  Identities=9%  Similarity=0.054  Sum_probs=44.6

Q ss_pred             HHHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHHHhhheecCCC
Q 013305          242 GFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDE  312 (445)
Q Consensus       242 l~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lLs~~~  312 (445)
                      ..-.+++++++++.|.+.++|+....-++++++.|.++|+|....  .    -.+|++++++||++++..+
T Consensus        41 ~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~--~----~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           41 CASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDL--P----AIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             HHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCH--H----HHHHHHHHHHHHHHHhcCC
Confidence            334556799999999999999988889999999999999997543  3    3578888999999987643

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=96.66  E-value=0.015  Score=49.03  Aligned_cols=64  Identities=11%  Similarity=0.096  Sum_probs=53.6

Q ss_pred             HHHHHHhhhhcccccceehhhHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHHHHHHhhheecCCC
Q 013305          243 FWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDE  312 (445)
Q Consensus       243 ~Ql~~LN~aL~~~da~~VvPv~~v~~t~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lLs~~~  312 (445)
                      .-..++++++++.|.+.++|+....-++.+.+.|.++|+|..  +..+    .+|..+++.||++++..+
T Consensus        42 ~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~--s~~~----~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           42 ASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRL--DLPA----IIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCC--CHHH----HHHHHHHHHHHHHHhcCC
Confidence            334567899999999999999888999999999999999975  3443    578889999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00