Citrus Sinensis ID: 013311

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-----
MALQNIGASNSDDAFYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPPSYTTKYFGNELGAQSKFDEKTGTSLVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETDIIITKTQMVNLKCAACGFVSEVDMRDKLTTFILKNPPVQKKTSKDKKSLRRAEKERLKEGEAADEELKKIKKEAGKKKGSSANSKDVTAKGASTKKKAHSSDDDHSPSRSQADENEPAIDDADDDDDIQWQTDTSLEAAKQRIQEQLSSVTADMVMLSTTEEKKKSGKKSPDRESKGHENGASGPNTHLADQMKDFLKKGASASQFKSFLGSLSGTPQEVMDALFVALFDGIEKGFAKEVTKKKNYLAAATQEEGSQMVLLHSLESFCGKARPAAVKEVALVLKALYDNDLLEEEFILDWYQKGLGGANKNSQVWKNAKPVIEWLQNAESETEED
cccccccccccccccccccccccEEEEEEcccccEEEEEEHHHHHHHHccccHHHHHHHHHHHcccccccccccEEEEEccccHHHHHHHHHHHHHHcccccccccccccEEEEcccEEEEEEcccccccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcccccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccc
ccEEEEcccccccccEEEccccEEEEEEcccccEEEEEEcHHHHHHHHcccccccHHEcccEccccEEcccccccEEEcccccHHHHHHHHHHHHHHHEEccccccccEEEEEEcccEEEEcccccccccccccHcccEEEEEEcccccccccccHHHHHHHHHHHcccccccHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHccccHcHccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccc
malqnigasnsddafyrykmpkMITKIegrgngiktNVVNMVDIAKalarppsyttkyfgnelgaqskfdektgtslvngaHDTAKLAGLLENFIKKYVQcygcgnpetdIIITKTQMVNlkcaacgfvsevdmrDKLTTFilknppvqkktskdKKSLRRAEKERLKEGEAADEELKKIKKEAgkkkgssanskdvtakgastkkkahssdddhspsrsqadenepaiddadddddiqwqTDTSLEAAKQRIQEQLSSVTADMVMLSTTEEkkksgkkspdreskghengasgpnthLADQMKDFLKKGASASQFKSFlgslsgtpQEVMDALFVALFDGIEKGFAKEVTKKKNYLAAATQEEGSQMVLLHSLESFCGKARPAAVKEVALVLKALydndlleeEFILDWYQkglgganknsqvWKNAKPVIEWLQNaeseteed
malqnigasnsddafyrYKMPKMITkiegrgngikTNVVNMVDIAKALARPPSYTTKYFGNELGAQSKFDEKTGTSLVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETDIIITKTQMVNLKCAACGFVSEVDMRDKLTtfilknppvqkktskdkkslrraekerlkegeaadeelkkikkeagkkkgssanskdvtakgastkkkahssdddhspsrsqadenepaiddaddddDIQWQTDTSLEAAKQRIQEQLSSVTADMVMLStteekkksgkkspdreskghengasgpnthLADQMKDFLKKGASASQFKSFLGSLSGTPQEVMDALFVALFDGIEKGFAKEVTKKKNYLAAATQEEGSQMVLLHSLESFCGKARPAAVKEVALVLKALYDNDLLEEEFILDWYQKGLGGANknsqvwknAKPVIEWLqnaeseteed
MALQNIGASNSDDAFYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPPSYTTKYFGNELGAQSKFDEKTGTSLVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETDIIITKTQMVNLKCAACGFVSEVDMRDKLTTFILKNPPVQKKTSKDKKSLRRAEKERLKEGEAADEELkkikkeagkkkgssanskDVTAKGastkkkahssdddhspsrsQADENEPaiddadddddiQWQTDTSLEAAKQRIQEQLSSVTADMVMLstteekkksgkksPDRESKGHENGASGPNTHLADQMKDFLKKGASASQFKSFLGSLSGTPQEVMDALFVALFDGIEKGFAKEVTKKKNYLAAATQEEGSQMVLLHSLESFCGKARPaavkevalvlkalYDNDLLEEEFILDWYQKGLGGANKNSQVWKNAKPVIEWLQNAESETEED
*************AFYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPPSYTTKYFGNELGAQ**F***TGTSLVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETDIIITKTQMVNLKCAACGFVSEVDMRDKLTTFILK**************************************************************************************************************************************************************************************PQEVMDALFVALFDGIEKGFAKEVTKKKNYLAAATQEEGSQMVLLHSLESFCGKARPAAVKEVALVLKALYDNDLLEEEFILDWYQKGLGGANKNSQVWKNAKPVIEWL**********
*A******SNSDDAFYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPPSYTTKYFGNELGAQSKFDEKTGTSLVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETDIIITKTQMVNLKCAACGFVSEVDMRDKLTTF****************************************************************************************DDADDDDDIQWQTDTSLE**************************************************HLADQMKDFLKKGASASQFKSFLGSLSGTPQEVMDALFVALFDGIEKGFAKEVTKKKNYLAAATQEEGSQMVLLHSLESFCGKARPAAVKEVALVLKALYDNDLLEEEFILDWYQK*********QVWKNAKPVIE************
MALQNIGASNSDDAFYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPPSYTTKYFGNELGAQSKFDEKTGTSLVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETDIIITKTQMVNLKCAACGFVSEVDMRDKLTTFILKNPP*************************ADEELKKIK*********************************************PAIDDADDDDDIQWQTDTSLEAAKQRIQEQLSSVTADMVMLST**********************ASGPNTHLADQMKDFLKKGASASQFKSFLGSLSGTPQEVMDALFVALFDGIEKGFAKEVTKKKNYLAAATQEEGSQMVLLHSLESFCGKARPAAVKEVALVLKALYDNDLLEEEFILDWYQKGLGGANKNSQVWKNAKPVIEWLQ*********
*ALQNIGASNSDDAFYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPPSYTTKYFGNELGAQSKFDEKTGTSLVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETDIIITKTQMVNLKCAACGFVSEVDMRDKLTTFILKNPPV*******************************************************************************************WQTDTSLEAAKQRIQEQLSSVTADMVMLST******************HENGASGPNTHLADQMKDFLKKGASASQFKSFLGSLSGTPQEVMDALFVALFDGIEKGFAKEVTKKKNYLAAATQEEGSQMVLLHSLESFCGKARPAAVKEVALVLKALYDNDLLEEEFILDWYQKGLGGANKNSQVWKNAKPVIEWLQNA*******
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MALQNIGASNSDDAFYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPPSYTTKYFGNELGAQSKFDEKTGTSLVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETDIIITKTQMVNLKCAACGFVSEVDMRDKLTTFILKNPPVQKKTSKDKKSLRRAEKERLKEGEAADEELKKIKKEAGKKKGSSANSKDVTAKGASTKKKAHSSDDDHSPSRSQADENEPAIDDADDDDDIQWQTDTSLEAAKQRIQEQLSSVTADMVMLSTTEEKKKSGKKSPDRESKGHENGASGPNTHLADQMKDFLKKGASASQFKSFLGSLSGTPQEVMDALFVALFDGIEKGFAKEVTKKKNYLAAATQEEGSQMVLLHSLESFCGKARPAAVKEVALVLKALYDNDLLEEEFILDWYQKGLGGANKNSQVWKNAKPVIEWLQNAESETEED
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query445 2.2.26 [Sep-21-2011]
Q9S825437 Probable eukaryotic trans yes no 0.948 0.965 0.671 1e-160
P48724443 Eukaryotic translation in N/A no 0.991 0.995 0.686 1e-159
Q9C8F1439 Probable eukaryotic trans no no 0.961 0.974 0.664 1e-154
P55876451 Eukaryotic translation in N/A no 0.968 0.955 0.639 1e-151
Q9VXK6464 Eukaryotic translation in yes no 0.871 0.836 0.310 6e-48
P59325429 Eukaryotic translation in yes no 0.319 0.331 0.576 4e-44
Q07205429 Eukaryotic translation in yes no 0.319 0.331 0.576 4e-44
Q22918436 Eukaryotic translation in no no 0.301 0.307 0.570 3e-42
Q09689395 Probable eukaryotic trans yes no 0.350 0.394 0.525 1e-41
P38431405 Eukaryotic translation in yes no 0.867 0.953 0.308 4e-41
>sp|Q9S825|IF5Z_ARATH Probable eukaryotic translation initiation factor 5-2 OS=Arabidopsis thaliana GN=At1g77840 PE=2 SV=1 Back     alignment and function desciption
 Score =  563 bits (1452), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 299/445 (67%), Positives = 353/445 (79%), Gaps = 23/445 (5%)

Query: 1   MALQNIGASNSDDAFYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPPSYTTKYFG 60
           MALQNIGASN +DAFYRYKMPKM+TK EG+GNGIKTN++N V+IAKALARPPSYTTKYFG
Sbjct: 1   MALQNIGASNRNDAFYRYKMPKMVTKTEGKGNGIKTNIINNVEIAKALARPPSYTTKYFG 60

Query: 61  NELGAQSKFDEKTGTSLVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETDIIITKTQMVN 120
            ELGAQSKFDEKTGTSLVNGAH+T+KLAGLLENFIKK+VQCYGCGNPET+IIITKTQMVN
Sbjct: 61  CELGAQSKFDEKTGTSLVNGAHNTSKLAGLLENFIKKFVQCYGCGNPETEIIITKTQMVN 120

Query: 121 LKCAACGFVSEVDMRDKLTTFILKNPPVQKKTSKDKKSLRRAEKERLKEGEAADEELKKI 180
           LKCAACGF+SEVDMRDKLT FILKNPP QKK SKDKK++R+AEKERLKEGE ADEE    
Sbjct: 121 LKCAACGFISEVDMRDKLTNFILKNPPEQKKVSKDKKAMRKAEKERLKEGELADEE---- 176

Query: 181 KKEAGKKKGSSANSKDVTAKGASTKKKAHSSDDDHSPSRSQADENE-PAIDDADDDDDIQ 239
           +++   KK + +N KD      S   K HSSD+D SP     DEN     +D DDDD ++
Sbjct: 177 QRKLKAKKKALSNGKD------SKTSKNHSSDEDISPKH---DENALEVDEDEDDDDGVE 227

Query: 240 WQTDTSLEAAKQRIQEQLSSVTADMVMLSTTEEKKKSGKKSPDRESKGHENGASGP---N 296
           WQTDTS EAA++R+ EQLS+ TA+MVMLS  E ++   KK+P  +S G+      P    
Sbjct: 228 WQTDTSREAAEKRMMEQLSAKTAEMVMLSAMEVEE---KKAPKSKSNGNVVKTENPPPQE 284

Query: 297 THLADQMKDFLKKGASASQFKSFLGSLSGTPQEVMDALFVALFDGIEKGFAKEVTKKKNY 356
            +L   MK++LKKG+  S  KSF+ SLS  PQ++MDALF ALFDG+ KGFAKEVTKKKNY
Sbjct: 285 KNLVQDMKEYLKKGSPISALKSFISSLSEPPQDIMDALFNALFDGVGKGFAKEVTKKKNY 344

Query: 357 LAAAT--QEEGSQMVLLHSLESFCGK-ARPAAVKEVALVLKALYDNDLLEEEFILDWYQK 413
           LAAA   QE+GSQM LL+S+ +FCGK     A+KEVALVLKALYD D++EEE +LDWY+K
Sbjct: 345 LAAAATMQEDGSQMHLLNSIGTFCGKNGNEEALKEVALVLKALYDQDIIEEEVVLDWYEK 404

Query: 414 GLGGANKNSQVWKNAKPVIEWLQNA 438
           GL GA+K+S VWKN KP +EWLQ+A
Sbjct: 405 GLTGADKSSPVWKNVKPFVEWLQSA 429
Catalyzes the hydrolysis of GTP bound to the 40S ribosomal initiation complex (40S.mRNA.Met-tRNA[F].eIF-2.GTP) with the subsequent joining of a 60S ribosomal subunit resulting in the release of eIF-2 and the guanine nucleotide. The subsequent joining of a 60S ribosomal subunit results in the formation of a functional 80S initiation complex (80S.mRNA.Met-tRNA[F]).
Arabidopsis thaliana (taxid: 3702)
>sp|P48724|IF5_PHAVU Eukaryotic translation initiation factor 5 OS=Phaseolus vulgaris GN=EIF5 PE=2 SV=1 Back     alignment and function description
>sp|Q9C8F1|IF5Y_ARATH Probable eukaryotic translation initiation factor 5-1 OS=Arabidopsis thaliana GN=At1g36730 PE=2 SV=1 Back     alignment and function description
>sp|P55876|IF5_MAIZE Eukaryotic translation initiation factor 5 OS=Zea mays GN=EIF5 PE=2 SV=1 Back     alignment and function description
>sp|Q9VXK6|IF5_DROME Eukaryotic translation initiation factor 5 OS=Drosophila melanogaster GN=eIF5 PE=1 SV=1 Back     alignment and function description
>sp|P59325|IF5_MOUSE Eukaryotic translation initiation factor 5 OS=Mus musculus GN=Eif5 PE=1 SV=1 Back     alignment and function description
>sp|Q07205|IF5_RAT Eukaryotic translation initiation factor 5 OS=Rattus norvegicus GN=Eif5 PE=1 SV=1 Back     alignment and function description
>sp|Q22918|IF5_CAEEL Eukaryotic translation initiation factor 5 OS=Caenorhabditis elegans GN=C37C3.2 PE=2 SV=2 Back     alignment and function description
>sp|Q09689|IF5_SCHPO Probable eukaryotic translation initiation factor 5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2F7.05c PE=3 SV=1 Back     alignment and function description
>sp|P38431|IF5_YEAST Eukaryotic translation initiation factor 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TIF5 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query445
255545566447 eukaryotic translation initiation factor 0.982 0.977 0.773 0.0
225459435450 PREDICTED: eukaryotic translation initia 0.982 0.971 0.759 0.0
449524096444 PREDICTED: LOW QUALITY PROTEIN: eukaryot 0.988 0.990 0.717 1e-176
449465960444 PREDICTED: eukaryotic translation initia 0.988 0.990 0.717 1e-176
224077216452 predicted protein [Populus trichocarpa] 0.982 0.966 0.723 1e-173
224119320444 predicted protein [Populus trichocarpa] 0.982 0.984 0.692 1e-167
147809825459 hypothetical protein VITISV_030619 [Viti 0.977 0.947 0.696 1e-167
225453080458 PREDICTED: eukaryotic translation initia 0.977 0.949 0.696 1e-167
356570163444 PREDICTED: eukaryotic translation initia 0.993 0.995 0.684 1e-163
297839641440 hypothetical protein ARALYDRAFT_476949 [ 0.959 0.970 0.690 1e-161
>gi|255545566|ref|XP_002513843.1| eukaryotic translation initiation factor, putative [Ricinus communis] gi|223546929|gb|EEF48426.1| eukaryotic translation initiation factor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/441 (77%), Positives = 383/441 (86%), Gaps = 4/441 (0%)

Query: 1   MALQNIGASNSDDAFYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPPSYTTKYFG 60
           MALQNIGASNSDDAFYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARP +YTTKYFG
Sbjct: 1   MALQNIGASNSDDAFYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPAAYTTKYFG 60

Query: 61  NELGAQSKFDEKTGTSLVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETDIIITKTQMVN 120
           NELGAQSKFDEKTGTSLVNGAHDT KLAGLLENFIKKYVQCYGCGNPET+I+ITKTQM+N
Sbjct: 61  NELGAQSKFDEKTGTSLVNGAHDTPKLAGLLENFIKKYVQCYGCGNPETEIVITKTQMIN 120

Query: 121 LKCAACGFVSEVDMRDKLTTFILKNPPVQKKTSKDKKSLRRAEKERLKEGEAADEELKKI 180
           LKCAACGFVS+VDMRDKLTTFILKNPP  KK +KDKK++RRAEKERLKEGE ADEE KK 
Sbjct: 121 LKCAACGFVSDVDMRDKLTTFILKNPPEPKKGAKDKKAMRRAEKERLKEGEFADEEQKKH 180

Query: 181 KKEAGKKKGSSANSKDVTAKGASTKKKAHSSDDDHSPSRSQADENEP-AIDDADDDDDIQ 239
           KKE  KKKG + +SKD+T KG S++KK + SD+DHSP+RS  DEN+    DD +DD D+Q
Sbjct: 181 KKETIKKKGPTVSSKDIT-KGTSSRKKGNGSDEDHSPTRSLPDENDQLTADDDEDDGDVQ 239

Query: 240 WQTDTSLEAAKQRIQEQLSSVTADMVMLSTTEEKKKSGKKSPDRESKGHENG--ASGPNT 297
           WQTDTSLEAAKQRIQEQLS+VTADMVML+T EEK KS KKSP+RE K HENG  ++G   
Sbjct: 240 WQTDTSLEAAKQRIQEQLSTVTADMVMLTTDEEKAKSAKKSPEREVKVHENGSKSNGSQE 299

Query: 298 HLADQMKDFLKKGASASQFKSFLGSLSGTPQEVMDALFVALFDGIEKGFAKEVTKKKNYL 357
            L  ++K  LKKG+S SQ KS+L SLSGT QEVM+ALF ALF+G+EKGF+KEVTK+K YL
Sbjct: 300 GLVHEIKAHLKKGSSPSQLKSYLSSLSGTSQEVMNALFAALFEGVEKGFSKEVTKRKKYL 359

Query: 358 AAATQEEGSQMVLLHSLESFCGKARPAAVKEVALVLKALYDNDLLEEEFILDWYQKGLGG 417
           AAATQEEGSQ+VLLH++ESF  K  P A KEV+LVLK LYDND+LEE+FIL WYQKGL G
Sbjct: 360 AAATQEEGSQIVLLHAIESFFAKLSPEATKEVSLVLKVLYDNDVLEEDFILAWYQKGLSG 419

Query: 418 ANKNSQVWKNAKPVIEWLQNA 438
           +NKNS VWK  KP +EWL+NA
Sbjct: 420 SNKNSAVWKYVKPFVEWLENA 440

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225459435|ref|XP_002285825.1| PREDICTED: eukaryotic translation initiation factor 5-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449524096|ref|XP_004169059.1| PREDICTED: LOW QUALITY PROTEIN: eukaryotic translation initiation factor 5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449465960|ref|XP_004150695.1| PREDICTED: eukaryotic translation initiation factor 5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224077216|ref|XP_002305183.1| predicted protein [Populus trichocarpa] gi|222848147|gb|EEE85694.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224119320|ref|XP_002331282.1| predicted protein [Populus trichocarpa] gi|222873707|gb|EEF10838.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147809825|emb|CAN64883.1| hypothetical protein VITISV_030619 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225453080|ref|XP_002270702.1| PREDICTED: eukaryotic translation initiation factor 5-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356570163|ref|XP_003553260.1| PREDICTED: eukaryotic translation initiation factor 5-like [Glycine max] Back     alignment and taxonomy information
>gi|297839641|ref|XP_002887702.1| hypothetical protein ARALYDRAFT_476949 [Arabidopsis lyrata subsp. lyrata] gi|297333543|gb|EFH63961.1| hypothetical protein ARALYDRAFT_476949 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query445
TAIR|locus:2029416437 AT1G77840 [Arabidopsis thalian 0.395 0.402 0.875 3.5e-137
TAIR|locus:2196376439 AT1G36730 [Arabidopsis thalian 0.966 0.979 0.590 9.9e-126
MGI|MGI:95309429 Eif5 "eukaryotic translation i 0.359 0.372 0.532 1.1e-55
RGD|619861429 Eif5 "eukaryotic translation i 0.359 0.372 0.532 1.1e-55
UNIPROTKB|Q07205429 Eif5 "Eukaryotic translation i 0.359 0.372 0.532 1.1e-55
UNIPROTKB|F1N0F7429 EIF5 "Uncharacterized protein" 0.370 0.384 0.531 2.4e-55
UNIPROTKB|P55010431 EIF5 "Eukaryotic translation i 0.359 0.371 0.532 3e-55
UNIPROTKB|Q5ZIE0430 EIF5 "Uncharacterized protein" 0.370 0.383 0.526 3e-55
UNIPROTKB|E2RJU3430 EIF5 "Uncharacterized protein" 0.359 0.372 0.526 4.9e-55
UNIPROTKB|E1C073431 EIF5 "Uncharacterized protein" 0.370 0.382 0.522 2.6e-54
TAIR|locus:2029416 AT1G77840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 822 (294.4 bits), Expect = 3.5e-137, Sum P(2) = 3.5e-137
 Identities = 154/176 (87%), Positives = 168/176 (95%)

Query:     1 MALQNIGASNSDDAFYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPPSYTTKYFG 60
             MALQNIGASN +DAFYRYKMPKM+TK EG+GNGIKTN++N V+IAKALARPPSYTTKYFG
Sbjct:     1 MALQNIGASNRNDAFYRYKMPKMVTKTEGKGNGIKTNIINNVEIAKALARPPSYTTKYFG 60

Query:    61 NELGAQSKFDEKTGTSLVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETDIIITKTQMVN 120
              ELGAQSKFDEKTGTSLVNGAH+T+KLAGLLENFIKK+VQCYGCGNPET+IIITKTQMVN
Sbjct:    61 CELGAQSKFDEKTGTSLVNGAHNTSKLAGLLENFIKKFVQCYGCGNPETEIIITKTQMVN 120

Query:   121 LKCAACGFVSEVDMRDKLTTFILKNPPVQKKTSKDKKSLRRAEKERLKEGEAADEE 176
             LKCAACGF+SEVDMRDKLT FILKNPP QKK SKDKK++R+AEKERLKEGE ADEE
Sbjct:   121 LKCAACGFISEVDMRDKLTNFILKNPPEQKKVSKDKKAMRKAEKERLKEGELADEE 176
GO:0003743 "translation initiation factor activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0006413 "translational initiation" evidence=IEA
GO:0006446 "regulation of translational initiation" evidence=ISS
GO:0005737 "cytoplasm" evidence=IDA
GO:0006865 "amino acid transport" evidence=RCA
TAIR|locus:2196376 AT1G36730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:95309 Eif5 "eukaryotic translation initiation factor 5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|619861 Eif5 "eukaryotic translation initiation factor 5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q07205 Eif5 "Eukaryotic translation initiation factor 5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1N0F7 EIF5 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P55010 EIF5 "Eukaryotic translation initiation factor 5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZIE0 EIF5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2RJU3 EIF5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1C073 EIF5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9VXK6IF5_DROMENo assigned EC number0.31000.87190.8362yesno
P55876IF5_MAIZENo assigned EC number0.63930.96850.9556N/Ano
P38431IF5_YEASTNo assigned EC number0.30870.86740.9530yesno
P48724IF5_PHAVUNo assigned EC number0.68680.99100.9954N/Ano
Q9S825IF5Z_ARATHNo assigned EC number0.67190.94830.9656yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
grail3.0038004701
hypothetical protein (452 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_Genewise1_v1.C_LG_IV3730
SubName- Full=Putative uncharacterized protein; (223 aa)
     •  0.822
grail3.0124004301
hypothetical protein (575 aa)
     •  0.821
estExt_Genewise1_v1.C_LG_VIII0704
SubName- Full=Putative uncharacterized protein; (293 aa)
    ••  0.820
grail3.0022021301
SubName- Full=Putative uncharacterized protein; (294 aa)
     •  0.820
fgenesh4_pm.C_LG_XVI000211
hypothetical protein (895 aa)
     •  0.812
fgenesh4_pg.C_LG_II000156
hypothetical protein (910 aa)
     •  0.812
estExt_fgenesh4_pm.C_LG_V0660
hypothetical protein (897 aa)
     •  0.812
estExt_Genewise1_v1.C_LG_XIV3113
SubName- Full=Putative uncharacterized protein; (333 aa)
     •  0.811
grail3.0024032201
SubName- Full=Putative uncharacterized protein; (437 aa)
     •  0.811
grail3.0022015701
SubName- Full=Putative uncharacterized protein; (287 aa)
     •  0.811

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query445
smart00653110 smart00653, eIF2B_5, domain present in translation 5e-52
pfam01873125 pfam01873, eIF-5_eIF-2B, Domain found in IF2B/IF5 2e-49
cd11561157 cd11561, W2_eIF5, C-terminal W2 domain of eukaryot 3e-43
smart0051583 smart00515, eIF5C, Domain at the C-termini of GCD6 2e-21
pfam0202075 pfam02020, W2, eIF4-gamma/eIF5/eIF2-epsilon 5e-17
cd11558169 cd11558, W2_eIF2B_epsilon, C-terminal W2 domain of 1e-15
PRK03988138 PRK03988, PRK03988, translation initiation factor 2e-15
TIGR00311133 TIGR00311, aIF-2beta, translation initiation facto 1e-11
COG1601151 COG1601, GCD7, Translation initiation factor 2, be 5e-11
PRK12336201 PRK12336, PRK12336, translation initiation factor 3e-10
cd11560194 cd11560, W2_eIF5C_like, C-terminal W2 domain of th 1e-07
cd11473135 cd11473, W2, C-terminal domain of eIF4-gamma/eIF5/ 3e-04
>gnl|CDD|214764 smart00653, eIF2B_5, domain present in translation initiation factor eIF2B and eIF5 Back     alignment and domain information 
 Score =  170 bits (432), Expect = 5e-52
 Identities = 53/115 (46%), Positives = 67/115 (58%), Gaps = 5/115 (4%)

Query: 15  FYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPPSYTTKYFGNELGAQSKFDEKTG 74
           FYR+KMP      EG+G   KT +VN  DIAKAL RPP +  K+   ELG Q   D K G
Sbjct: 1   FYRFKMPPPQVLREGKG---KTVIVNFADIAKALNRPPDHVLKFLLAELGTQGSIDGK-G 56

Query: 75  TSLVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETDIIITKTQMVNLKCAACGFV 129
             +VNG     KL  LL  +IK+YV C  CG+P+T++I    ++  LKC ACG  
Sbjct: 57  RLIVNGRFTPKKLQDLLRRYIKEYVLCPECGSPDTELIKE-NRLFFLKCEACGAR 110

Length = 110
>gnl|CDD|216754 pfam01873, eIF-5_eIF-2B, Domain found in IF2B/IF5 Back     alignment and domain information
>gnl|CDD|211399 cd11561, W2_eIF5, C-terminal W2 domain of eukaryotic translation initiation factor 5 Back     alignment and domain information
>gnl|CDD|214705 smart00515, eIF5C, Domain at the C-termini of GCD6, eIF-2B epsilon, eIF-4 gamma and eIF-5 Back     alignment and domain information
>gnl|CDD|216850 pfam02020, W2, eIF4-gamma/eIF5/eIF2-epsilon Back     alignment and domain information
>gnl|CDD|211396 cd11558, W2_eIF2B_epsilon, C-terminal W2 domain of eukaryotic translation initiation factor 2B epsilon Back     alignment and domain information
>gnl|CDD|235189 PRK03988, PRK03988, translation initiation factor IF-2 subunit beta; Validated Back     alignment and domain information
>gnl|CDD|129411 TIGR00311, aIF-2beta, translation initiation factor aIF-2, beta subunit, putative Back     alignment and domain information
>gnl|CDD|224517 COG1601, GCD7, Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|183451 PRK12336, PRK12336, translation initiation factor IF-2 subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|211398 cd11560, W2_eIF5C_like, C-terminal W2 domain of the eukaryotic translation initiation factor 5C and similar proteins Back     alignment and domain information
>gnl|CDD|211395 cd11473, W2, C-terminal domain of eIF4-gamma/eIF5/eIF2b-epsilon Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 445
KOG2767400 consensus Translation initiation factor 5 (eIF-5) 100.0
smart00653110 eIF2B_5 domain present in translation initiation f 100.0
PF01873125 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: 100.0
TIGR00311133 aIF-2beta translation initiation factor aIF-2, bet 100.0
PRK03988138 translation initiation factor IF-2 subunit beta; V 100.0
PRK12336201 translation initiation factor IF-2 subunit beta; P 100.0
KOG2768231 consensus Translation initiation factor 2, beta su 99.97
COG1601151 GCD7 Translation initiation factor 2, beta subunit 99.96
KOG2297412 consensus Predicted translation factor, contains W 99.87
PF0202084 W2: eIF4-gamma/eIF5/eIF2-epsilon; InterPro: IPR003 99.85
smart0051583 eIF5C Domain at the C-termini of GCD6, eIF-2B epsi 99.82
KOG1461673 consensus Translation initiation factor 2B, epsilo 99.78
PF09090253 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This 96.73
COG1326201 Uncharacterized archaeal Zn-finger protein [Genera 94.94
PF1267749 DUF3797: Domain of unknown function (DUF3797); Int 94.57
TIGR0244359 conserved hypothetical metal-binding protein. Memb 93.16
PF0952671 DUF2387: Probable metal-binding protein (DUF2387); 92.77
PF0125383 SUI1: Translation initiation factor SUI1; InterPro 91.48
PRK00464154 nrdR transcriptional regulator NrdR; Validated 91.18
smart0044040 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding mo 90.2
PF0109639 TFIIS_C: Transcription factor S-II (TFIIS); InterP 88.95
PF01921360 tRNA-synt_1f: tRNA synthetases class I (K); InterP 88.13
PF1435461 Lar_restr_allev: Restriction alleviation protein L 87.88
TIGR00244147 transcriptional regulator NrdR. Members of this al 87.63
PRK0971064 lar restriction alleviation and modification prote 86.87
TIGR0365553 anti_R_Lar restriction alleviation protein, Lar fa 86.39
TIGR01159173 DRP1 density-regulated protein DRP1. This protein 83.67
PHA02998195 RNA polymerase subunit; Provisional 83.08
PF1480334 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C. 81.87
COG1384521 LysS Lysyl-tRNA synthetase (class I) [Translation, 81.03
PRK1489299 putative transcription elongation factor Elf1; Pro 80.99
cd00674353 LysRS_core_class_I catalytic core domain of class 80.98
cd0047477 SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation fac 80.95
PF1420555 Cys_rich_KTR: Cysteine-rich KTR 80.89
PF0827143 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013 80.56
PF1371937 zinc_ribbon_5: zinc-ribbon domain 80.15
>KOG2767 consensus Translation initiation factor 5 (eIF-5) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=2.2e-107  Score=801.59  Aligned_cols=388  Identities=48%  Similarity=0.734  Sum_probs=311.7

Q ss_pred             ceeccCCCCCCCCcccccCCCceEEEeccCCCceEEEechHHHHHHhCCCchHHHHHHHHhhcCcccccCCCCeEEEEee
Q 013311            2 ALQNIGASNSDDAFYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPPSYTTKYFGNELGAQSKFDEKTGTSLVNGA   81 (445)
Q Consensus         2 a~ini~~~~~~d~~~Rykmp~~~~k~eG~gng~kT~i~N~~~ia~~L~R~p~~~~ky~~~ELg~~~~~~~~~~~~ii~G~   81 (445)
                      |+||| +|++.|||||||||++++|+||+||||||+|+||.+||+||+|||.|++|||||||||||+||.++|||||||+
T Consensus         1 a~iNI-nrsn~D~FYRYKMPrl~aKvEGKGNGIKTvIvNm~eIakAL~RPp~Y~tKyFGcELGAQT~fd~kn~ryiVNG~   79 (400)
T KOG2767|consen    1 ASINI-NRSNRDPFYRYKMPRLQAKVEGKGNGIKTVIVNMVEIAKALGRPPLYPTKYFGCELGAQTKFDVKNGRYIVNGA   79 (400)
T ss_pred             Ccccc-cccccchhhhhccchhhhhccccCCCeeeeeecHHHHHHHhCCCCCcccccceeeccccccccccCCeeeeccc
Confidence            58999 88999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhhccccCCCCCCCceEEEecCCeeeeeccccCCcccccchhhhhHHHhcCCCCccccchhhHHHHH
Q 013311           82 HDTAKLAGLLENFIKKYVQCYGCGNPETDIIITKTQMVNLKCAACGFVSEVDMRDKLTTFILKNPPVQKKTSKDKKSLRR  161 (445)
Q Consensus        82 ~~~~~l~~~l~~fi~~fVlC~~C~~peT~l~~~k~~~~~~~C~aCG~~~~v~~~~kl~~~i~k~pP~~~~~~k~~k~~~~  161 (445)
                      |++.+||++|++||++|||||+|+||||.|+++++++|.++|+|||.++.+++||||++||+||||++.+++|++|+.+ 
T Consensus        80 Hd~~KLqdlLdgFIkKFVlC~~C~NPETel~itk~q~i~~~CkACG~r~~~d~rhKLs~fIlKNPP~~~~~s~~kk~~~-  158 (400)
T KOG2767|consen   80 HEASKLQDLLDGFIKKFVLCPSCENPETELIITKKQTISLKCKACGFRSDMDLRHKLSTFILKNPPEQKDSSKDKKKAE-  158 (400)
T ss_pred             ccHHHHHHHHHHHHHHheeCcCCCCCceeEEecccchhhhHHHHcCCcccccchhhhcceeecCCcccccchhhhHHHH-
Confidence            9999999999999999999999999999999987899999999999999999999999999999999888888776543 


Q ss_pred             HHHHHhhhchhhhHHHHHHHhhhccccCCCCCCcchhcccccccccCCCCCCCCCCCc-cccCCCCCCCCCCCCCccccc
Q 013311          162 AEKERLKEGEAADEELKKIKKEAGKKKGSSANSKDVTAKGASTKKKAHSSDDDHSPSR-SQADENEPAIDDADDDDDIQW  240 (445)
Q Consensus       162 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~d~~~~~-~~~~~~~~~~~~~~~dddv~W  240 (445)
                       +++|.+          |.+ .  +++|.    +.        .++..+.+ +..++. ..++..+.+  .+++|||  |
T Consensus       159 -~k~R~~----------K~k-~--k~~g~----~s--------~~~~~~~~-~~~~~~i~~~a~~~t~--e~~DDdd--W  207 (400)
T KOG2767|consen  159 -KKERKG----------KSK-D--KKDGS----KS--------SKNETSPD-DSLSREIDPAAPLETA--EEDDDDD--W  207 (400)
T ss_pred             -HHHhhh----------hcc-c--ccccc----cC--------CccCCCcc-cccccccccccCcccc--ccccccc--c
Confidence             222211          000 0  11221    00        00111121 222211 222222221  2334444  9


Q ss_pred             cccCcHHHHHHHHHHhhhhhhhhhhhccchhHhhhcCCCCCCcccCCCCCCCCCChhHHHHHHHHHHhcCC---ChHHHH
Q 013311          241 QTDTSLEAAKQRIQEQLSSVTADMVMLSTTEEKKKSGKKSPDRESKGHENGASGPNTHLADQMKDFLKKGA---SASQFK  317 (445)
Q Consensus       241 ~~DtSeeAvk~R~~e~ls~~~~~~~~~~~~e~ek~~~~~~~~~e~~~~~~~~~~~~~e~v~~lk~~l~~~~---s~~ei~  317 (445)
                      ++|||+||+++||+ +|++.+++|+|+++.+..        ++++          .+.+.+.+....+++.   +..+|.
T Consensus       208 ~~Dtseea~r~R~~-~Ls~~~~~~~~~sd~e~~--------E~~~----------~~~~~d~~~~~~~en~~~~~~kEi~  268 (400)
T KOG2767|consen  208 AVDTSEEAIRARMQ-ELSANAKEMLLLSDLEKS--------EEER----------EDILYDFVKKKKEENVPDKSDKEIV  268 (400)
T ss_pred             cccchHHHHHHHHH-HHhhhhhhhhhhhhhhhh--------HHHH----------HHHHHHhhhhcccccCCCccHHHHH
Confidence            99999999999995 699999999987653111        0111          1222222333333442   345677


Q ss_pred             HHhhhcCCChhhHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHhccC-chhHHHHHHHHHHHhcccChhhHHHHHHHHHHH
Q 013311          318 SFLGSLSGTPQEVMDALFVALFDGIEKGFAKEVTKKKNYLAAATQE-EGSQMVLLHSLESFCGKARPAAVKEVALVLKAL  396 (445)
Q Consensus       318 ~el~~~~l~~~~v~~vl~eaLf~~i~~~i~k~i~k~~~lL~~~~~~-~~~Q~~lL~alE~~~~~~~~~l~~~~~~ILk~L  396 (445)
                      .++..+.+. +....+|.++||+.   .++++|.++++||.+|+.. +++|++||++||+||..++..+++.+|.||+.|
T Consensus       269 ~~a~~l~i~-~k~p~vl~~~Lf~e---~ivkei~k~~~~l~k~~~~~~k~qr~LLggiE~~~~~~~~el~~kva~ilk~l  344 (400)
T KOG2767|consen  269 KEAERLDIK-NKAPLVLAEVLFDE---KIVKEILKHRALLLKFCTNNEKAQRYLLGGIERFVEKHEAELISKVAGILKEL  344 (400)
T ss_pred             HHHHHHhhc-ccchHHHHHHHhhh---HHHHHHHHHHHHHHHHHhccHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            777777664 38888999999998   9999999999999999985 899999999999999998899999999999999


Q ss_pred             hhCCcchhHHHHHHhhcCCCCCc---chhHHHHhhhHHHHHhccCccCccCC
Q 013311          397 YDNDLLEEEFILDWYQKGLGGAN---KNSQVWKNAKPVIEWLQNAESETEED  445 (445)
Q Consensus       397 YD~DIleEE~Il~W~~k~s~~~~---~~~~vrk~a~pFI~WLeEAEEEsdeE  445 (445)
                      ||+|||+|++|+.||++++++||   ..+++++.++|||+||++||+|+++|
T Consensus       345 Yd~DI~~e~vi~~w~~K~skk~vsk~~sk~i~e~a~Pfi~WL~~AESe~eeE  396 (400)
T KOG2767|consen  345 YDEDILEEEVIIKWGEKPSKKYVSKEKSKKIRENAKPFIEWLKNAESEDEEE  396 (400)
T ss_pred             HhhhhhhHHHHHHHHhcccccccchhhhhhhHhhhhHHHHHHHhcccccccc
Confidence            99999999999999999999998   35699999999999999998776654

>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5 Back     alignment and domain information
>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology [] Back     alignment and domain information
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative Back     alignment and domain information
>PRK03988 translation initiation factor IF-2 subunit beta; Validated Back     alignment and domain information
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional Back     alignment and domain information
>KOG2768 consensus Translation initiation factor 2, beta subunit (eIF-2beta) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1601 GCD7 Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF02020 W2: eIF4-gamma/eIF5/eIF2-epsilon; InterPro: IPR003307 This entry represents the W2 domain (two invariant tryptophans) and is a region of ~165 amino acids which is found in the C terminus of the following eIFs [, , , ]: Eukaryotic translation initiation factor 2B epsilon (eIF-2B-epsilon) Eukaryotic translation initiation factor 4 gamma (eIF-4-gamma) Eukaryotic translation initiation factor 5 (eIF-5), a GTPase-activating protein (GAP) specific for eIF2 Translation initiation is a sophisticated, well regulated and highly coordinated cellular process in eukaryotes, in which at least 11 eukayrotic initiation factors (eIFs) are included [] Back     alignment and domain information
>smart00515 eIF5C Domain at the C-termini of GCD6, eIF-2B epsilon, eIF-4 gamma and eIF-5 Back     alignment and domain information
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF09090 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This entry represents an MIF4G-like domain Back     alignment and domain information
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF12677 DUF3797: Domain of unknown function (DUF3797); InterPro: IPR024256 This presumed domain is functionally uncharacterised Back     alignment and domain information
>TIGR02443 conserved hypothetical metal-binding protein Back     alignment and domain information
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC Back     alignment and domain information
>PF01253 SUI1: Translation initiation factor SUI1; InterPro: IPR001950 In Saccharomyces cerevisiae (Baker's yeast), SUI1 is a translation initiation factor that functions in concert with eIF-2 and the initiator tRNA-Met in directing the ribosome to the proper start site of translation [] Back     alignment and domain information
>PRK00464 nrdR transcriptional regulator NrdR; Validated Back     alignment and domain information
>smart00440 ZnF_C2C2 C2C2 Zinc finger Back     alignment and domain information
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar Back     alignment and domain information
>TIGR00244 transcriptional regulator NrdR Back     alignment and domain information
>PRK09710 lar restriction alleviation and modification protein; Reviewed Back     alignment and domain information
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family Back     alignment and domain information
>TIGR01159 DRP1 density-regulated protein DRP1 Back     alignment and domain information
>PHA02998 RNA polymerase subunit; Provisional Back     alignment and domain information
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C Back     alignment and domain information
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK14892 putative transcription elongation factor Elf1; Provisional Back     alignment and domain information
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase Back     alignment and domain information
>cd00474 SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation factor 1) fold is found in eukaryotes, archaea, and some bacteria and is thought to play an important role in accurate initiator codon recognition during translation initiation Back     alignment and domain information
>PF14205 Cys_rich_KTR: Cysteine-rich KTR Back     alignment and domain information
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF13719 zinc_ribbon_5: zinc-ribbon domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query445
2g2k_A170 Nmr Structure Of An N-Terminal Fragment Of The Euka 1e-43
2e9h_A157 Solution Structure Of The Eif-5_eif-2b Domain From 2e-43
2d74_B148 Crystal Structure Of Translation Initiation Factor 6e-09
1nee_A138 Structure Of Archaeal Translation Factor Aif2beta F 2e-08
2qmu_C138 Structure Of An Archaeal Heterotrimeric Initiation 2e-04
3cw2_K139 Crystal Structure Of The Intact Archaeal Translatio 2e-04
2nxu_A146 Atomic Structure Of Translation Initiation Factor A 3e-04
>pdb|2G2K|A Chain A, Nmr Structure Of An N-Terminal Fragment Of The Eukaryotic Initiation Factor 5 (Eif5) Length = 170 Back     alignment and structure 
Iteration: 1

 Score =  173 bits (439), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 80/136 (58%), Positives = 100/136 (73%), Gaps = 1/136 (0%)
Query: 13  DAFYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPPSYTTKYFGNELGAQSKFDEK 72
           D FYRYKMP++I K+EG+GNGIKT +VNMVD+AKAL RPP+Y TKYFG ELGAQ++FD K
Sbjct: 11  DQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVK 70
Query: 73  TGTSLVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETDIIIT-KTQMVNLKCAACGFVSE 131
               +VNG+H+  KL  +L+ FIKK+V C  C NPETD+ +  K Q +   C ACG+   
Sbjct: 71  NDRYIVNGSHEANKLQDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYRGM 130
Query: 132 VDMRDKLTTFILKNPP 147
           +D   KL TFILKNPP
Sbjct: 131 LDTHHKLCTFILKNPP 146
>pdb|2E9H|A Chain A, Solution Structure Of The Eif-5_eif-2b Domain From Human Eukaryotic Translation Initiation Factor 5 Length = 157 Back     alignment and structure
>pdb|2D74|B Chain B, Crystal Structure Of Translation Initiation Factor Aif2betagamma Heterodimer Length = 148 Back     alignment and structure
>pdb|1NEE|A Chain A, Structure Of Archaeal Translation Factor Aif2beta From Methanobacterium Thermoautrophicum Length = 138 Back     alignment and structure
>pdb|2QMU|C Chain C, Structure Of An Archaeal Heterotrimeric Initiation Factor 2 Reveals A Nucleotide State Between The Gtp And The Gdp States Length = 138 Back     alignment and structure
>pdb|3CW2|K Chain K, Crystal Structure Of The Intact Archaeal Translation Initiation Factor 2 From Sulfolobus Solfataricus . Length = 139 Back     alignment and structure
>pdb|2NXU|A Chain A, Atomic Structure Of Translation Initiation Factor Aif2 Beta-Subunit From Archaebacteria Sulfolobus Solfataricus: High Resolution Nmr In Solution Length = 146 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query445
2e9h_A157 EIF-5, eukaryotic translation initiation factor 5; 1e-58
2g2k_A170 EIF-5, eukaryotic translation initiation factor 5; 1e-57
2d74_B148 Translation initiation factor 2 beta subunit; prot 6e-40
1nee_A138 EIF-2-beta, probable translation initiation factor 6e-39
3cw2_K139 Translation initiation factor 2 subunit beta; AIF2 3e-38
2ful_A177 EIF-5, eukaryotic translation initiation factor 5; 1e-23
1paq_A189 Translation initiation factor EIF-2B epsilon subun 7e-22
2iu1_A208 EIF5, eukaryotic translation initiation factor 5; 6e-21
3jui_A182 Translation initiation factor EIF-2B subunit EPSI; 2e-20
3d3m_A168 Eukaryotic translation initiation factor 4 gamma 2 3e-09
3l6a_A364 Eukaryotic translation initiation factor 4 gamma; 2e-05
3k1f_M197 Transcription initiation factor IIB; RNA polymeras 5e-05
1k8b_A52 EIF-2-beta, probable translation initiation factor 3e-04
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 157 Back     alignment and structure
 Score =  188 bits (479), Expect = 1e-58
 Identities = 80/139 (57%), Positives = 101/139 (72%), Gaps = 1/139 (0%)

Query: 10  NSDDAFYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPPSYTTKYFGNELGAQSKF 69
           +  D FYRYKMP++I K+EG+GNGIKT +VNMVD+AKAL RPP+Y TKYFG ELGAQ++F
Sbjct: 15  SVSDQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQF 74

Query: 70  DEKTGTSLVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETDIII-TKTQMVNLKCAACGF 128
           D K    +VNG+H+  KL  +L+ FIKK+V C  C NPETD+ +  K Q +   C ACG+
Sbjct: 75  DVKNDRYIVNGSHEANKLQDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGNSCKACGY 134

Query: 129 VSEVDMRDKLTTFILKNPP 147
              +D   KL TFILKNPP
Sbjct: 135 RGMLDTHHKLCTFILKNPP 153
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens} Length = 170 Back     alignment and structure
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B* Length = 148 Back     alignment and structure
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1 Length = 138 Back     alignment and structure
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C* Length = 139 Back     alignment and structure
>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat motif; 1.50A {Saccharomyces cerevisiae} Length = 177 Back     alignment and structure
>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14 Length = 189 Back     alignment and structure
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens} Length = 208 Back     alignment and structure
>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} Length = 182 Back     alignment and structure
>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat domain, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens} Length = 168 Back     alignment and structure
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens} Length = 364 Back     alignment and structure
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Length = 197 Back     alignment and structure
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1 Length = 52 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query445
2g2k_A170 EIF-5, eukaryotic translation initiation factor 5; 100.0
2e9h_A157 EIF-5, eukaryotic translation initiation factor 5; 100.0
1nee_A138 EIF-2-beta, probable translation initiation factor 100.0
2d74_B148 Translation initiation factor 2 beta subunit; prot 100.0
3cw2_K139 Translation initiation factor 2 subunit beta; AIF2 100.0
3jui_A182 Translation initiation factor EIF-2B subunit EPSI; 99.96
2ful_A177 EIF-5, eukaryotic translation initiation factor 5; 99.96
1paq_A189 Translation initiation factor EIF-2B epsilon subun 99.96
2iu1_A208 EIF5, eukaryotic translation initiation factor 5; 99.95
3d3m_A168 Eukaryotic translation initiation factor 4 gamma 2 99.9
3l6a_A364 Eukaryotic translation initiation factor 4 gamma; 99.81
1k8b_A52 EIF-2-beta, probable translation initiation factor 99.81
1ug3_A339 EIF4GI, eukaryotic protein synthesis initiation fa 99.38
1k81_A36 EIF-2-beta, probable translation initiation factor 99.37
1h2v_C 771 80 kDa nuclear CAP binding protein; CAP-binding-co 94.48
2ogh_A108 Eukaryotic translation initiation factor EIF-1; al 90.4
1qyp_A57 RNA polymerase II; transcription, RPB9, Zn ribbon, 84.08
1tfi_A50 Transcriptional elongation factor SII; transcripti 84.0
2pk7_A69 Uncharacterized protein; NESG, PLR1, putative tetr 82.35
1pft_A50 TFIIB, PFTFIIBN; N-terminal domain, transcription 81.04
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=3.5e-65  Score=466.46  Aligned_cols=150  Identities=54%  Similarity=0.973  Sum_probs=145.5

Q ss_pred             CceeccCCCCCCCCcccccCCCceEEEeccCCCceEEEechHHHHHHhCCCchHHHHHHHHhhcCcccccCCCCeEEEEe
Q 013311            1 MALQNIGASNSDDAFYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPPSYTTKYFGNELGAQSKFDEKTGTSLVNG   80 (445)
Q Consensus         1 Ma~ini~~~~~~d~~~Rykmp~~~~k~eG~gng~kT~i~N~~~ia~~L~R~p~~~~ky~~~ELg~~~~~~~~~~~~ii~G   80 (445)
                      |+ ||| +|+++||||||+||+|++++||+||||||+|+||.+||++|+|||+||+|||++||||+|+||++++||||||
T Consensus         1 ~~-~Ni-~~~~~D~~~RykmP~~~v~~EG~gnG~KTvi~Nf~dIak~L~R~p~hv~kyf~~ELGt~g~id~~~~rliinG   78 (170)
T 2g2k_A            1 LS-VNV-NRSVMDQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNG   78 (170)
T ss_dssp             CC-SCC-CSSCCSCCSSCCCCCCCCEEESCTTTCEEECSSHHHHHHHHSSCCTTTHHHHHHHTTCCCEECTTTCCEEEEB
T ss_pred             Cc-ccc-cCCCCCccccccCCCCeEEEeccCCccEEEEEcHHHHHHHhCCCHHHHHHHHHHHhCCceeecCCCCEEEEEe
Confidence            65 999 9999999999999999999999999999999999999999999999999999999999999998899999999


Q ss_pred             ecCHHHHHHHHHHHHhhccccCCCCCCCceEEEe-cCCeeeeeccccCCcccccchhhhhHHHhcCCCCcccc
Q 013311           81 AHDTAKLAGLLENFIKKYVQCYGCGNPETDIIIT-KTQMVNLKCAACGFVSEVDMRDKLTTFILKNPPVQKKT  152 (445)
Q Consensus        81 ~~~~~~l~~~l~~fi~~fVlC~~C~~peT~l~~~-k~~~~~~~C~aCG~~~~v~~~~kl~~~i~k~pP~~~~~  152 (445)
                      +|++.+||++|++||++||+|++|+||||.|+++ ++++++++|.|||++++|+++|||+|||+||||+.++.
T Consensus        79 ~~~~~~i~~~L~~yI~~YVlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~~~V~~~~kl~t~i~knpp~~~~~  151 (170)
T 2g2k_A           79 SHEANKLQDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYRGMLDTHHKLCTFILKNPPENSDS  151 (170)
T ss_dssp             CCCHHHHHHHHHHHHHHHHSCTTTSSSCEEEEEETTTTEEEEEETTTCCCCCSCSSSSHHHHHHTSCCCCCSS
T ss_pred             eeCHHHHHHHHHHHHHHeEECCCCCCCccEEEEecCCCEEEEEccccCCccccccccceeeeeeecCCCCCcc
Confidence            9999999999999999999999999999999996 68999999999999999999999999999999986653
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1 Back     alignment and structure
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B* Back     alignment and structure
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C* Back     alignment and structure
>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} SCOP: a.118.1.0 Back     alignment and structure
>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat motif; 1.50A {Saccharomyces cerevisiae} Back     alignment and structure
>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14 Back     alignment and structure
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens} Back     alignment and structure
>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat domain, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens} Back     alignment and structure
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens} Back     alignment and structure
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1 Back     alignment and structure
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 Back     alignment and structure
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1 Back     alignment and structure
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A* Back     alignment and structure
>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1 Back     alignment and structure
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1 Back     alignment and structure
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1 Back     alignment and structure
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 445
d1neea198 d.241.1.1 (A:1-98) Translation initiation factor 2 2e-21
d1paqa_161 a.118.1.14 (A:) Translation initiation factor eIF- 5e-18
d1ug3a2127 a.118.1.14 (A:1438-1564) Eukaryotic initiation fac 3e-14
d1k8ba_52 d.241.1.1 (A:) Translation initiation factor 2 bet 1e-12
d1neea237 g.59.1.1 (A:99-135) Zinc-binding domain of transla 1e-04
d1k81a_36 g.59.1.1 (A:) Zinc-binding domain of translation i 0.003
>d1neea1 d.241.1.1 (A:1-98) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 98 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribosome binding domain-like
superfamily: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
family: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
domain: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 86.3 bits (214), Expect = 2e-21
 Identities = 21/96 (21%), Positives = 44/96 (45%), Gaps = 8/96 (8%)

Query: 2  ALQNIGASNSDDAFYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPPSYTTKYFGN 61
          A+  +     +    R+++PK  + I+G     +T + N  ++A AL R P +  K+   
Sbjct: 11 AIDQLPPEVFET--KRFEVPKAYSVIQGN----RTFIQNFREVADALNRDPQHLLKFLLR 64

Query: 62 ELGAQSKFDEKTGTSLVNGAHDTAKLAGLLENFIKK 97
          ELG     +   G +++ G      +   +E+++ K
Sbjct: 65 ELGTAGNLEG--GRAILQGKFTHFLINERIEDYVNK 98
>d1paqa_ a.118.1.14 (A:) Translation initiation factor eIF-2b epsilon {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 161 Back     information, alignment and structure
>d1ug3a2 a.118.1.14 (A:1438-1564) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Length = 127 Back     information, alignment and structure
>d1k8ba_ d.241.1.1 (A:) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 52 Back     information, alignment and structure
>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 37 Back     information, alignment and structure
>d1k81a_ g.59.1.1 (A:) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 36 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query445
d1neea198 Translation initiation factor 2 beta, aIF2beta, N- 99.93
d1paqa_161 Translation initiation factor eIF-2b epsilon {Bake 99.92
d1k8ba_52 Translation initiation factor 2 beta, aIF2beta, N- 99.8
d1ug3a2127 Eukaryotic initiation factor eIF4G {Human (Homo sa 99.59
d1neea237 Zinc-binding domain of translation initiation fact 99.43
d1k81a_36 Zinc-binding domain of translation initiation fact 99.34
d1h2vc3 310 CBP80, 80KDa nuclear cap-binding protein {Human (H 96.35
d1qypa_57 RBP9 subunit of RNA polymerase II {Archaeon Thermo 86.33
d1pfta_50 Transcription initiation factor TFIIB, N-terminal 83.83
d1dl6a_58 Transcription initiation factor TFIIB, N-terminal 82.73
d1twfi272 RBP9 subunit of RNA polymerase II {Baker's yeast ( 82.52
>d1neea1 d.241.1.1 (A:1-98) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosome binding domain-like
superfamily: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
family: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
domain: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.93  E-value=1.2e-26  Score=193.40  Aligned_cols=83  Identities=24%  Similarity=0.474  Sum_probs=77.0

Q ss_pred             CCCCCCCcccccCCCceEEEeccCCCceEEEechHHHHHHhCCCchHHHHHHHHhhcCcccccCCCCeEEEEeecCHHHH
Q 013311            8 ASNSDDAFYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPPSYTTKYFGNELGAQSKFDEKTGTSLVNGAHDTAKL   87 (445)
Q Consensus         8 ~~~~~d~~~Rykmp~~~~k~eG~gng~kT~i~N~~~ia~~L~R~p~~~~ky~~~ELg~~~~~~~~~~~~ii~G~~~~~~l   87 (445)
                      |....+ ..||+||+|+++++|+    ||+|+||.+||++|+|+|+|++|||++||||+|++|  +|++||+|+|++..|
T Consensus        16 ~~~~~~-~~R~~mP~~~v~~eGk----kTii~Nf~~Ia~~L~R~p~hl~kfl~~ELgt~g~i~--~~~lii~G~~~~~~i   88 (98)
T d1neea1          16 PPEVFE-TKRFEVPKAYSVIQGN----RTFIQNFREVADALNRDPQHLLKFLLRELGTAGNLE--GGRAILQGKFTHFLI   88 (98)
T ss_dssp             CTTSCC-CCCCCCSCCCCCEETT----EEEESCHHHHHHHHCSSHHHHHHHHHHHCCSCCCCB--TTTEEEESSCSSSHH
T ss_pred             CcccCC-CcceecCCceEEEecc----eEEEechHHHHHHHCCCHHHHHHHHHHHhCCceEEe--CCEEEEEeeeCHHHH
Confidence            444444 5799999999999998    999999999999999999999999999999999997  689999999999999


Q ss_pred             HHHHHHHHhh
Q 013311           88 AGLLENFIKK   97 (445)
Q Consensus        88 ~~~l~~fi~~   97 (445)
                      +++|++||++
T Consensus        89 ~~~l~~yI~e   98 (98)
T d1neea1          89 NERIEDYVNK   98 (98)
T ss_dssp             HHHHHHHHTH
T ss_pred             HHHHHHHhcC
Confidence            9999999985
>d1paqa_ a.118.1.14 (A:) Translation initiation factor eIF-2b epsilon {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k8ba_ d.241.1.1 (A:) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1ug3a2 a.118.1.14 (A:1438-1564) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1k81a_ g.59.1.1 (A:) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1h2vc3 a.118.1.14 (C:481-790) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qypa_ g.41.3.1 (A:) RBP9 subunit of RNA polymerase II {Archaeon Thermococcus celer [TaxId: 2264]} Back     information, alignment and structure
>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure